Sample_Id	SV_Status	Site1_Hugo_Symbol	Site2_Hugo_Symbol	Site1_Chromosome	Site2_Chromosome	Site1_Position	Site2_Position	Site1_Description	Site2_Description	Site2_Effect_On_Frame	NCBI_Build	Class	Tumor_Split_Read_Count	Tumor_Paired_End_Read_Count	Event_Info	Breakpoint_Type	Connection_Type	Annotation	DNA_Support	RNA_Support	SV_Length	Normal_Read_Count	Tumor_Read_Count	Normal_Variant_Count	Tumor_Variant_Count
P-0022424-T01-IM6	SOMATIC	SEPTIN12	ARID1A	16	1	4838352	27089562	5-UTR of SEPT12(-):11Kb before coding start	Exon 8 of ARID1A(+)		GRCh37	TRANSLOCATION	10	10	Protein Fusion: mid-exon  {ARID1A:SEPT12}	PRECISE	3to3	ARID1A (NM_006015) - SEPT12 (NM_144605) rearrangement: t(1;16)(p36.11;p13.3)(chr1:g.27089562::chr16:g.4838352)	yes	unknown	0	0	0	0	10
P-0015002-T01-IM6	SOMATIC	A2BP1	ZFHX3	16	16	6119693	72831356	5-UTR of A2BP1(+): 982Kb before coding start	Exon 9 of ZFHX3(-)		GRCh37	INVERSION	21	23	Protein fusion: mid-exon (ZFHX3-A2BP1)	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement : c.5225:ZFHX3_g.6119693inv	yes	unknown	66711663	322021	328704	0	22
P-0067067-T01-IM7	SOMATIC	ABCA3	CREBBP	16	16	2345775	3832990	Intron of ABCA3(-):34bp before exon 18	Intron of CREBBP(-):63bp before exon 6		GRCh37	DUPLICATION	10	26	Protein Fusion: in frame  {ABCA3:CREBBP}	PRECISE	5to3	ABCA3 (NM_001089) - CREBBP (NM_004380) rearrangement: c.2264-34:ABCA3_c.1331-63:CREBBPdup	yes	unknown	1487215	110825	189734	0	26
P-0056185-T01-IM6	SOMATIC	ABCC4	VEGFA	13	6	95869663	43752221	Intron of ABCC4(-):7Kb before exon 5	Intron of VEGFA(+):56bp before exon 8		GRCh37	TRANSLOCATION	10	58	Protein Fusion: out of frame  {ABCC4:VEGFA}	PRECISE	5to5	ABCC4 (NM_005845) - VEGFA (NM_001171623) rearrangement: t(6;13)(p21.1;q32.1)(chr6:g.43752221::chr13:g.95869663)	yes	unknown	0	0	0	0	66
P-0014522-T01-IM6	SOMATIC	ABCC4	TMPRSS2	21	13	42873289	95689572	Intron of TMPRSS2(-): 3Kb before exon 2	Intron of ABCC4(-): 3Kb before exon 30		GRCh37	TRANSLOCATION	0	5	Protein fusion: out of frame (ABCC4-TMPRSS2)	IMPRECISE	3to5	ABCC4 (NM_005845) -  TMPRSS2 (NM_001135099) Rearrangement : t(13;21)(q32.1;q22.3)(chr13:g.:95689572::chr21:g.42873289)	yes	unknown	0	0	0	0	4
P-0068820-T01-IM7	SOMATIC	ABHD12B	SMAD4	18	14	48581044	51353629	Intron of SMAD4(+):106bp before exon 5	Intron of ABHD12B(+):227bp after exon 6		GRCh37	TRANSLOCATION	10	34	Protein Fusion: in frame  {ABHD12B:SMAD4}	PRECISE	5to3	ABHD12B (NM_001206673) - SMAD4 (NM_005359) rearrangement: t(14;18)(q22.1;q21.2)(chr14:g.51353629::chr18:g.48581044)	yes	unknown	0	0	0	0	33
P-0042420-T01-IM6	SOMATIC	ABL1	ABL1	9	9	119572065	133759824	Intron of ASTN2(-):4Kb before exon 12	Exon 11 of ABL1(+)		GRCh37	DELETION	8	5	ABL1-intragenic	PRECISE	3to5	ABL1 (NM_005157) rearrangement: c.2147:ABL1_chr9:g.119572065del	yes	unknown	14187759	54443	74271	0	5
P-0052432-T01-IM6	SOMATIC	ABL1		9	9	133431343	133730048	IGR: 21Kb before LOC100272217(-)	Intron of ABL1(+):139bp before exon 3		GRCh37	DELETION			ABL1-intragenic	PRECISE	3to5	ABL1 (NM_005157) rearrangement: c.254-140:ABL1_chr9:g.133431343del			298705	5677	3749	0	6
P-0011363-T01-IM5	SOMATIC	ABL1	ABL1	9	9	133753810	133755196	Exon 8 of ABL1(+)	Intron of ABL1(+): 259bp before exon 9		GRCh37	DELETION	16	9	Deletion within transcript: mid-exon	PRECISE	3to5	ABL1 (NM_005157) rearrangement : c.1279_1424-259del	yes	unknown	1386	1092	1358	0	9
P-0013514-T01-IM5	SOMATIC	ABL1	ABL1	9	9	133735646	133760623	Intron of ABL1(+): 3Kb before exon 4	Exon 11 of ABL1(+)		GRCh37	DUPLICATION	55	26	Duplication within transcript: mid-exon	PRECISE	5to3	ABL1 (NM_005157) rearrangement: c.550-2504_c.2946dup	yes	unknown	24977	19594	13628	0	26
P-0067374-T01-IM7	SOMATIC	ABL1	ATP6V1E1	22	9	18085705	133738151	Intron of ATP6V1E1(-):2Kb before exon 5	Exon 4 of ABL1(+)		GRCh37	TRANSLOCATION	10	31	Protein Fusion: mid-exon  {ABL1:ATP6V1E1}	PRECISE	3to3	ABL1 (NM_005157) - ATP6V1E1 (NM_001696) rearrangement: t(9;22)(q34.12;q11.21)(chr9:g.133738151::chr22:g.18085705)	yes	unknown	0	0	0	0	31
P-0003852-T01-IM5	SOMATIC	ACAA1	MYD88	3	3	38168118	38181233	Exon 7 of ACAA1(-)	Intron of MYD88(+): 122bp before exon 2		GRCh37	INVERSION	9	9	Protein fusion: mid-exon (ACAA1-MYD88)	PRECISE	5to5	ACAA1 (NM_001607) - MYD88 (NM_002468) rearrangement : c.700:ACAA1_c.368-122:MYD88inv	yes	unknown	13115	2304	1423	0	9
P-0005976-T01-IM5	SOMATIC	ACAP1	TP53	17	17	7250910	7580636	Intron of ACAP1(+): 331bp before exon 15	5-UTR of TP53(-): 724bp before coding start		GRCh37	INVERSION	54	52	Transcript fusion (ACAP1-TP53)	PRECISE	3to3	ACAP1(NM_014716) and TP53(NM_000546) rearrangement : c.1344-331:ACAP1_c.-28-696:TP53inv	yes	unknown	329726	41486	16036	0	50
P-0016809-T02-IM6	SOMATIC	ACLY	TAP2	17	6	40049233	32797080	Intron of ACLY(-):52bp after exon 15	Intron of TAP2(-):96bp after exon 11		GRCh37	TRANSLOCATION	9	6	Antisense Fusion	PRECISE	5to5	TAP2 (NM_018833) rearrangement: t(6;17)(p21.32;q21.2)(chr6:g.32797080::chr17:g.40049233)	yes	unknown	0	0	0	0	6
P-0042854-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111759697	111884955	Intron of ACOXL(+):6Kb after exon 14	Intron of BCL2L11(+):3Kb after exon 2		GRCh37	DELETION	10	50	Protein Fusion: out of frame  {ACOXL:BCL2L11}	PRECISE	3to5	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.1281+6116:ACOXL_c.394+3239:BCL2L11del	yes	unknown	125258	19511	13325	1	52
P-0063584-T01-IM7	SOMATIC	ACPP	AXL	19	3	41748483	132079395	Intron of AXL(+):304bp before exon 11	Intron of ACPP(+):4Kb after exon 10		GRCh37	TRANSLOCATION	8	7	Protein Fusion: in frame  {ACPP:AXL}	PRECISE	5to3	ACPP (NM_001134194) - AXL (NM_021913) rearrangement: t(3;19)(q22.1;q13.2)(chr3:g.132079395::chr19:g.41748483)	yes	unknown	0	0	0	0	7
P-0013245-T01-IM5	SOMATIC	ACPP	ATR	3	3	132075716	142226990	Exon 10 of ACPP(+)	Intron of ATR(-): 39bp before exon 28		GRCh37	INVERSION	9	8	Protein fusion: mid-exon (ACPP-ATR)	PRECISE	3to3	ACPP (NM_001134194) - ATR (NM_001184) rearrangement: c.1138+17:ACPP_c.4853-39:ATRinv	yes	unknown	10151274	107274	98036	0	8
P-0016820-T01-IM6	SOMATIC	ACVR1	ACVR1	2	2	158626916	158633513	Exon 7 of ACVR1(-)	Intron of ACVR1(-):1Kb after exon 5		GRCh37	DUPLICATION	10	24	Duplication within transcript : mid-exon	PRECISE	5to3	ACVR1 (NM_001111067) Rearrangement : c.543+1130_754dup	yes	unknown		1684	2614	0	25
P-0072932-T01-IM7	SOMATIC	ACVR2A	BRAF								GRCh37				ACVR2A-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ACVR2A-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes ACVR2A Exon4 (NM_001616) and BRAF Exon11 (NM_004333).	yes	unknown					
P-0072932-T01-IM7	SOMATIC	ACVR2A	BRAF	7	2	140482103	148668856	Intron of BRAF(-):610bp before exon 11	Intron of ACVR2A(+):4Kb before exon 5		GRCh37	TRANSLOCATION	10	31	Protein Fusion: in frame  {ACVR2A:BRAF}	PRECISE	3to3	ACVR2A (NM_001616) - BRAF (NM_004333) fusion: t(2;7)(q22.3;q34)(chr2:g.148668856::chr7:g.140482103)	yes	unknown	0	0	0	0	32
P-0026930-T01-IM6	SOMATIC	ADCY1	CSF1R	7	5	45629335	149452928	Intron of ADCY1(+):3Kb before exon 2	Exon 7 of CSF1R(-)		GRCh37	TRANSLOCATION	10	38	Protein Fusion: mid-exon  {ADCY1:CSF1R}	PRECISE	3to3	ADCY1 (NM_021116) - CSF1R (NM_005211) rearrangement: t(5;7)(q32;p12.3)(chr5:g.149452928::chr7:g.45629335)	yes	unknown	0	0	0	0	38
P-0039234-T01-IM6	SOMATIC	ADCY10	NUF2	1	1	163295867	167862886	Exon 2 of NUF2(+)	Intron of ADCY10(-):204bp after exon 5		GRCh37	INVERSION	10	32	Protein Fusion: mid-exon  {ADCY10:NUF2}	PRECISE	5to5	ADCY10 (NM_018417) - NUF2 (NM_031423) rearrangement: c.828+205:ADCY10_c.26:NUF2inv	yes	unknown	4567019	18108	17519	0	47
P-0057984-T01-IM6	SOMATIC	ADCY8	NBN	8	8	90982718	132036985	Exon 7 of NBN(-)	Intron of ADCY8(-):15Kb after exon 1		GRCh37	DELETION	10	22	Protein Fusion: mid-exon  {ADCY8:NBN}	PRECISE	3to5	ADCY8 (NM_001115) - NBN (NM_002485) rearrangement: c.960+14635:ADCY8_c.770:NBNdel	yes	unknown	41054267	56168	79543	0	23
P-0043583-T01-IM6	SOMATIC	ADHFE1	TMPRSS2	21	8	42875000	67354656	Intron of TMPRSS2(-):5Kb after exon 1	Intron of ADHFE1(+):376bp before exon 3		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {ADHFE1:TMPRSS2}	PRECISE	3to3	ADHFE1 (NM_144650) - TMPRSS2 (NM_001135099) rearrangement: t(8;21)(q13.1;q22.3)(chr8:g.67354656::chr21:g.42875000)			0	0	0	0	33
P-0020763-T01-IM6	SOMATIC	AEBP2	RECQL	12	12	19703521	21624495	IGR: 110Kb before AEBP2(+)	Exon 14 of RECQL(-)		GRCh37	DELETION	10	33	RECQL-AEBP2 fusion	PRECISE	3to5	AEBP2 (NM_001114176) - RECQL (NM_032941) rearrangement: g.19703521_c.1534Gdel	yes	unknown	1920974	6871	14267	0	33
P-0065035-T02-IM7	SOMATIC	AGAP1	RAF1								GRCh37				AGAP1-RAF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: AGAP1-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes AGAP1 Exon9 (NM_001037131) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0050574-T02-IM6	SOMATIC	AGAP3	BRAF	7	7	140493208	150823608	Intron of BRAF(-):899bp after exon 8	Intron of AGAP3(+):2Kb before exon 10		GRCh37	INVERSION	10	67	Protein Fusion: in frame  {AGAP3:BRAF}	PRECISE	3to3	AGAP3 (NM_031946) - BRAF (NM_004333) fusion: c.1222-2059:AGAP3_c.1140+900:BRAFinv	yes	unknown	10330400	60829	83313	0	66
P-0067813-T01-IM7	SOMATIC	AGK	BRAF	7	7	140494673	141281239	Intron of BRAF(-):406bp before exon 8	Intron of AGK(+):12Kb before exon 3		GRCh37	INVERSION	10	4	Protein Fusion: in frame  {AGK:BRAF}	PRECISE	3to3	AGK (NM_018238) - BRAF (NM_004333) fusion: c.102-11707:AGK_c.981-406:BRAFinv	yes	unknown	786566	31172	57932	0	18
P-0034605-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141486602	141551202	IGR: 35Kb before CHRAC1(+)	Intron of AGO2(-):60bp after exon 15		GRCh37	DELETION	10	49	AGO2-intragenic	PRECISE	3to5	AGO2 (NM_012154) rearrangement: c.2034+61:AGO2_chr8:g.141486602del	yes	unknown	64600	7745	10046	0	49
P-0015358-T01-IM6	SOMATIC	AGO2		19	8	33663503	141566378	Intron of WDR88(+): 157bp after exon 10	Exon 9 of EIF2C2(-)		GRCh37	TRANSLOCATION			AGO2-intragenic	IMPRECISE	5to3	AGO2 (NM_012154) rearrangement: t(8;19)(q24.3;q13.11)(chr8:g.141566378::chr19:g.33663503)			0	0	0	0	30
P-0043747-T02-IM6	SOMATIC	AGO2		8	8	141541880	141542584	3-UTR of AGO2(-):262bp after coding stop	Exon 18 of AGO2(-)		GRCh37	INVERSION			AGO2-intragenic	PRECISE	3to3	AGO2 (NM_012154) rearrangement: c.2402:AGO2_chr8:g.141541880inv			704	2116	2524	0	3
P-0054839-T01-IM6	SOMATIC	AGO2		8	8	141499700	141569369	IGR: 22Kb before CHRAC1(+)	Intron of AGO2(-):124bp after exon 6		GRCh37	DELETION			AGO2-intragenic	PRECISE	3to5	AGO2 (NM_012154) rearrangement: c.790+125:AGO2_chr8:g.141499700:del			69669	31456	42917	0	8
P-0020644-T01-IM6	SOMATIC	AGO2	SHANK2	11	8	70919699	141542519	5-UTR of SHANK2(-):601Kb before coding start	Exon 18 of AGO2(-)		GRCh37	TRANSLOCATION			AGO2-SHANK2 Fusion	PRECISE	3to3	AGO2 (NM_012154) - SHANK2 (NM_012309) rearrangement: t(8;11)(q24.3;q13.4)(chr8:g.141542519::chr11:g.70919699)			0	0	0	0	7
P-0018711-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141551299	141552447	Exon 15 of AGO2(-)	Intron of AGO2(-):990bp before exon 15		GRCh37	DELETION	10	74	Deletion within transcript : mid-exon	PRECISE	3to5	AGO2 (NM_012154) rearrangement: c.1840-990_c.1998del	yes	unknown	1148	997	1354	0	84
P-0033766-T01-IM6	SOMATIC	AGO2		8	8	141542702	141545269	Exon 18 of AGO2(-)	Intron of AGO2(-):297bp after exon 17		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AGO2 (NM_012154) rearrangement: c.2271+298_c.2284del			2567	390	464	0	23
P-0038588-T01-IM6	SOMATIC	AGO2		8	8	141551343	141558960	Exon 15 of AGO2(-)	Intron of AGO2(-):252bp after exon 12		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AGO2 (NM_012154) Rearrangement : c.1588+253_c.1954del			7617	5637	6106	0	44
P-0047553-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141564299	141566119	Intron of AGO2(-):2Kb after exon 10	Intron of AGO2(-):2bp before exon 10		GRCh37	DUPLICATION	10	48	Duplication of 1 exon : in frame	PRECISE	5to3	AGO2 (NM_012154) rearrangement: c.1147-2_c.1269+1696dup	yes	unknown	1820	1336	1862	0	50
P-0005188-T02-IM6	SOMATIC	AGO2	PTK2	8	8	141569696	141943134	Intron of AGO2(-):68bp before exon 6	Intron of PTK2(-):42Kb before exon 3		GRCh37	DELETION	10	15	Protein Fusion: in frame  {PTK2:AGO2}	PRECISE	3to5	PTK2 (NM_005607) - AGO2 (NM_012154) rearrangement: c.35-42266:PTK2_c.656-68:AGO2del	yes	unknown	373438	8065	23877	0	17
P-0021826-T01-IM6	SOMATIC	AGO2	TRAPPC9	8	8	140884979	141559353	Intron of TRAPPC9(-):13Kb after exon 21	Exon 12 of AGO2(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {AGO2:TRAPPC9}	IMPPRECISE	3to5	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.1448:AGO2_c.3349+13144:TRAPPC9del			674374	15054	31634	0	26
P-0016571-T01-IM6	SOMATIC	AGO2	PTK2	8	8	141551339	141741346	Exon 15 of AGO2(-)	Intron of PTK2(-):4Kb after exon 22		GRCh37	DELETION	10	5	Protein Fusion: mid-exon  {PTK2:AGO2}	PRECISE	3to5	PTK2 (NM_005607) - AGO2 (NM_012154) rearrangement: c.2096+4004:PTK2_c.1958:AGO2del	yes	unknown	190007	15414	39785	0	5
P-0071783-T01-IM7	SOMATIC	AGO2	TRAPPC9	8	8	141453626	141595438	Intron of TRAPPC9(-):4Kb before exon 3	Intron of AGO2(-):28bp before exon 2		GRCh37	DELETION	4	2	Protein Fusion: out of frame  {AGO2:TRAPPC9}	PRECISE	3to5	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.23-28:AGO2_c.879-4330:TRAPPC9del	yes	unknown	141812	26377	47859	0	2
P-0015476-T01-IM6	SOMATIC	AGO2	SLX4	16	8	3654062	141595171	Intron of BTBD12(-): 2Kb before exon 4	Intron of EIF2C2(-): 47bp after exon 2		GRCh37	TRANSLOCATION			Protein fusion: out of frame (EIF2C2-BTBD12)	PRECISE	3to5	AGO2 (NM_012154)  - SLX4 (NM_032444) rearrangement: t(8;16)(q24.3;p13.3)(chr8:g.141595171::chr16:g.3654062)			0	0	0	0	18
P-0063444-T01-IM7	SOMATIC	AIRE	TMPRSS2	21	21	42861585	45713450	Intron of TMPRSS2(-):65bp before exon 4	Intron of AIRE(+):221bp before exon 11		GRCh37	INVERSION	10	21	Protein Fusion: out of frame  {AIRE:TMPRSS2}	PRECISE	3to3	AIRE (NM_000383) - TMPRSS2 (NM_001135099) rearrangement: c.1279-222:AIRE_c.350-65:TMPRSS2inv	yes	unknown	2851865	114466	150548	0	21
P-0083352-T01-IM7	SOMATIC	AK8	TSC1	9	9	135753258	135786736	Intron of AK8(-):300bp after exon 1	Intron of TSC1(-):103bp after exon 10		GRCh37	DUPLICATION			Protein Fusion: in frame  {AK8:TSC1}	IMPPRECISE	5to3	AK8 (NM_152572) - TSC1 (NM_000368) rearrangement: c.84+301:AK8_c.1029+104:TSC1dup			33478	14638	34583	0	5
P-0041672-T01-IM6	SOMATIC	AK9	IGF1R	15	6	99486197	109947133	Exon 19 of IGF1R(+)	Intron of AK9(-):7Kb before exon 13		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {AK9:IGF1R}	PRECISE	5to5	AK9 (NM_001145128) - IGF1R (NM_000875) rearrangement: t(6;15)(q21;q26.3)(chr6:g.109947133::chr15:g.99486197)	yes	unknown	0	0	0	0	5
P-0032282-T01-IM6	SOMATIC	AKAP10	FLCN	17	17	17125976	19829328	Intron of FLCN(-):1bp before exon 7	Intron of AKAP10(-):1Kb before exon 11		GRCh37	DELETION	10	139	Protein Fusion: in frame  {AKAP10:FLCN}	PRECISE	3to5	AKAP10 (NM_007202) - FLCN (NM_144997) rearrangement: c.1642-1498:AKAP10_c.619-1:FLCNdel	yes	unknown	2703352	16651	11662	0	157
P-0013277-T01-IM5	SOMATIC	AKAP11	FH	13	1	42830282	241665743	IGR: 16Kb before AKAP11(+)	Exon 8 of FH(-)		GRCh37	TRANSLOCATION	0	38	FH-AKAP11 fusion	IMPRECISE	5to5	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241665743::chr13:g.42830282)	yes	unknown	0	0	0	0	28
P-0007669-T01-IM5	SOMATIC	AKAP11	FH	13	1	42830622	241661295	IGR: 16Kb before AKAP11(+)	Intron of FH(-): 25bp before exon 10		GRCh37	TRANSLOCATION	0	93	FH-AKAP11 fusion	IMPRECISE	3to3	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241661295::chr13:g.42830622 )	yes	unknown	0	0	0	0	63
P-0013000-T01-IM5	SOMATIC	AKAP8	NOTCH3	19	19	15284910	15469419	Exon 25 of NOTCH3(-)	Intron of AKAP8(-): 359bp after exon 13		GRCh37	DELETION	66	54	Protein fusion: mid-exon (AKAP8-NOTCH3)	PRECISE	3to5	AKAP8 (NM_005858) -NOTCH3  (NM_000435) Rearrangement : c.1623+359:AKAP8_c.4705:NOTCH3del	yes	unknown	184509	130720	93282	0	53
P-0047719-T01-IM6	SOMATIC	AKAP8L	BRD4	19	19	15375463	15501266	Exon 6 of BRD4(-)	Intron of AKAP8L(-):7Kb after exon 12		GRCh37	DELETION	8	3	Protein Fusion: mid-exon  {AKAP8L:BRD4}	PRECISE	3to5	AKAP8L (NM_014371) - BRD4 (NM_058243) rearrangement: c.1536+6695:AKAP8L_c.964:BRD4del	yes	unknown	125803	8278	10616	0	3
P-0039125-T01-IM6	SOMATIC	AKAP8L	CDK12	19	17	15529663	37627994	Intron of AKAP8L(-):58bp after exon 1	Exon 2 of CDK12(+)		GRCh37	TRANSLOCATION	10	10	Protein Fusion: mid-exon  {AKAP8L:CDK12}	PRECISE	5to5	AKAP8L (NM_014371) - CDK12 (NM_016507) rearrangement: t(17;19)(q12;p13.12)(chr17:g.37627994::chr19:g.15529663)	yes	unknown	0	0	0	0	12
P-0062429-T01-IM7	SOMATIC	AKAP8L	BRD4	19	19	15379894	15509245	Intron of BRD4(-):41bp before exon 3	Intron of AKAP8L(-):579bp before exon 10		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {AKAP8L:BRD4}	PRECISE	3to5	AKAP8L (NM_014371) - BRD4 (NM_058243) rearrangement: c.1158-579:AKAP8L_c.286-41:BRD4del	yes	unknown	129351	4145	6267	0	46
P-0039746-T01-IM6	SOMATIC	AKT1	LINC02764	14	11	105246411	112596469	Intron of AKT1(-):13bp after exon 3	IGR: 192Kb before LOC387810(-)		GRCh37	TRANSLOCATION	10	32	AKT1-intragenic	PRECISE	5to5	AKT1 (NM_001014431) rearrangement: t(11;14)(q23.2;q32.33)(chr11:g.112596469::chr14:g.105246411)	yes	unknown	0	0	0	0	34
P-0065324-T01-IM7	SOMATIC	AKT1	LINC00226	14	14	105246361	106813948	Intron of AKT1(-):63bp after exon 3	IGR: 70Kb before LINC00226(+)		GRCh37	INVERSION	0	5	AKT1-intragenic	IMPPRECISE	5to5	AKT1 (NM_001014431) rearrangement: c.175+64:AKT1_chr14:g.106813948inv	yes	unknown	1567587	11680	7876	0	7
P-0014496-T01-IM6	SOMATIC	AKT1		14	14	99512393	105238749	IGR: 123Kb before BCL11B(-)	Exon 12 of AKT1(-)		GRCh37	DELETION			AKT1-intragenic	PRECISE	3to5	AKT1 (NM_001014431) rearrangement: chr14:g.99512393_c.1213:AKT1del			5726356	10882	11252	0	9
P-0014824-T01-IM6	SOMATIC	AKT1		14	14	105239416	105380925	Exon 11 of AKT1(-)	IGR: 10Kb before PLD4(+)		GRCh37	INVERSION			AKT1-intragenic	PRECISE	3to3	AKT1 (NM_001014431) rearrangement: c.971:AKT1_chr14:g.105380925inv			141509	22748	21757	0	5
P-0019967-T01-IM6	SOMATIC	AKT1		14	6	105242060	13754782	Exon 5 of AKT1(-)	IGR: 32Kb before MCUR1(-)		GRCh37	TRANSLOCATION			AKT1-intragenic	PRECISE	5to3	AKT1 (NM_001014431) rearrangement: t(6;14)(p23;q32.33)(chr6:g.13754782::chr14:g.105242060)			0	0	0	0	8
P-0041190-T01-IM6	SOMATIC	AKT1	AKT1	14	14	79788055	105238506	Intron of NRXN3(+):146Kb before exon 13	Intron of AKT1(-):195bp after exon 12		GRCh37	DELETION	10	20	Antisense Fusion	PRECISE	3to5	AKT1 (NM_001014431) rearrangement: c.1260+196:AKT1_chr14:g.79788055del	yes	unknown	25450451	77513	102876	0	20
P-0017217-T01-IM6	SOMATIC	AKT1	AKT1	14	14	105237184	105238702	Exon 13 of AKT1(-)	Exon 12 of AKT1(-)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	AKT1 (NM_001014431) rearrangement: c.1260_c.1261del	yes	unknown	1518	575	867	0	8
P-0054600-T01-IM6	SOMATIC	AKT1		14	14	105242124	105242995	Exon 5 of AKT1(-)	Exon 4 of AKT1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	AKT1 (NM_001014431) rearrangement: c.287+1_c.300del			871	1912	1836	0	8
P-0038541-T01-IM6	SOMATIC	AKT1	CEP128	14	14	81040246	105242111	Intron of CEP128(-):6Kb after exon 19	Exon 5 of AKT1(-)		GRCh37	DELETION	0	71	Protein Fusion: mid-exon  {AKT1:CEP128}	IMPPRECISE	3to5	AKT1 (NM_001014431) - CEP128 (NM_152446) rearrangement: c.313:AKT1_c.2856+6472:CEP128del	yes	unknown	24201865	74765	103646	1	72
P-0075895-T01-IM7	SOMATIC	AKT1	NUDC	14	1	105239853	27248191	Exon 9 of AKT1(-)	Promoter of NUDC(+):21bp from tx start		GRCh37	TRANSLOCATION	10	31	Protein Fusion: mid-exon  {NUDC:AKT1}	PRECISE	3to3	AKT1 (NM_001014431) rearrangement: t(1;14)(p36.11;q32.33)(chr1:g.27248191::chr14:g.105239853)	yes	unknown	0	0	0	0	34
P-0068088-T01-IM7	SOMATIC	AKT1	AKT1	14	14	105069134	105236858	Intron of TMEM179(-):2Kb after exon 1	Intron of AKT1(-):101bp before exon 14		GRCh37	DUPLICATION	0	5	Protein Fusion: out of frame  {TMEM179:AKT1}	IMPPRECISE	5to3	AKT1 (NM_001014431) rearrangement: c.1364-101:AKT1_chr14:g.105069134dup	yes	unknown	167724	1924	1694	0	5
P-0030134-T01-IM6	SOMATIC	AKT2	AKT2	19	19	40736136	40745059	Promoter of AKT2(-):87bp from tx start	Intron of AKT2(-):179bp before exon 8		GRCh37	INVERSION	10	8	AKT2-intragenic	PRECISE	3to3	AKT2 (NM_001626) rearrangement: c.640-179:AKT2_chr19:g.40736136inv	yes	unknown	8923	12626	18625	0	8
P-0064737-T01-IM7	SOMATIC	AKT2	AKT2	19	19	35689951	40745832	IGR: 26Kb before FAM187B(-)	Intron of AKT2(-):119bp after exon 7		GRCh37	INVERSION	10	47	AKT2-intragenic	PRECISE	5to5	AKT2 (NM_001626) rearrangement: c.639+120:AKT2_chr19:g.35689951inv	yes	unknown	5055881	114505	148209	0	52
P-0001760-T01-IM3	SOMATIC	AKT2	ACTN4	19	19	39176338	40742145	Intron of ACTN4(+): 15Kb before exon 2	Intron of AKT2(-): 19bp after exon 10		GRCh37	INVERSION			Protein fusion: in frame (AKT2-ACTN4)	PRECISE	5to5	AKT2 (NM_001626) - ACTN4 (NM_004924) Inversion:  c.960+19:ATK2_c.163-14902:ACTN4inv			1565807	7907	16939	0	21
P-0040684-T01-IM6	SOMATIC	AKT3	AKT3	1	1	239082557	243716154	IGR: 439Kb before LINC01139(-)	Exon 10 of AKT3(-)		GRCh37	INVERSION	10	24	AKT3-intragenic	PRECISE	3to3	AKT3 (NM_005465) rearrangement: c.1040:AKT3_chr1:g.239082557inv	yes	unknown	4633597	21152	41314	0	25
P-0069973-T01-IM7	SOMATIC	AKT3		1	1	243675614	244378494	Intron of AKT3(-):11bp after exon 12	IGR: 137Kb before C1orf100(+)		GRCh37	INVERSION			AKT3-intragenic	PRECISE	5to5	AKT3 (NM_005465) rearrangement: c.1354+12:AKT3_chr1:g.244378494inv			702880	10564	12911	0	11
P-0069621-T01-IM7	SOMATIC	AKT3	AKT3	1	1	231415948	243708884	Promoter of GNPAT(+):39Kb from tx start	Exon 11 of AKT3(-)		GRCh37	DELETION	10	16	Antisense Fusion	PRECISE	3to5	AKT3 (NM_005465) rearrangement: c.1179:AKT3_chr1:g.231415948del	yes	unknown	12292936	57824	100978	0	14
P-0071985-T01-IM7	SOMATIC	AKT3		22	1	29065804	243675552	Intron of TTC28(-):10Kb after exon 1	Intron of AKT3(-):73bp after exon 12		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	AKT3 (NM_005465) rearrangement: t(1;22)(q43;q12.1)(chr1:g.243675552::chr22:g.29065804)			0	0	0	0	9
P-0046952-T01-IM6	SOMATIC	AKT3		1	1	243725181	243727070	Intron of AKT3(-):2Kb after exon 9	Exon 9 of AKT3(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AKT3 (NM_005465) rearrangement: c.900_c.948+1841del			1889	514	185	0	9
P-0040096-T02-IM7	SOMATIC	ALB	FAM160A1	4	4	74270943	152265679	Intron of ALB(+):53bp after exon 2	IGR: 65Kb before FAM160A1(+)		GRCh37	DELETION	10	12	ALB-intragenic	PRECISE	3to5	ALB (NM_00047) rearrangement: c.137+53:ALB_chr4:g.152265679del	yes	unknown	77994736	337235	418399	0	12
P-0055682-T01-IM6	SOMATIC	ALDH2	IFNGR1	12	6	112238291	137539706	Intron of ALDH2(+):424bp after exon 11	Intron of IFNGR1(-):673bp after exon 1		GRCh37	TRANSLOCATION	9	5	Protein Fusion: out of frame  {ALDH2:IFNGR1}	PRECISE	3to3	ALDH2 (NM_000690) - IFNGR1 (NM_000416) rearrangement: t(6;12)(q23.3;q24.12)(chr6:g.137539706::chr12:g.112238291)	yes	unknown	0	0	0	0	5
P-0043336-T01-IM6	SOMATIC	ALK	MFSD4	2	1	29450227	205559556	Intron of ALK(-):212bp after exon 17	Intron of MFSD4(+):2Kb before exon 7		GRCh37	TRANSLOCATION	10	165	ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: t(1;2)(q32.1;p23.2)(chr1:g.205559556::chr2:g.29450227)	yes	unknown	0	0	0	0	178
P-0020450-T01-IM6	SOMATIC	ALK	TSN	2	2	29448185	123228344	Intron of ALK(-):141bp after exon 19	IGR: 715Kb before TSN(+)		GRCh37	DELETION	10	17	ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: c.3172+142:ALK_chr2:g.123228344del	yes	unknown	93780159	715480	683038	0	17
P-0065704-T01-IM7	SOMATIC	ALK	AGAP1	2	2	29448289	236220050	Intron of ALK(-):37bp after exon 19	IGR: 183Kb before AGAP1(+)		GRCh37	INVERSION	10	7	ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: c.3172+38:ALK_chr2:g.236220050inv	yes	unknown	206771761	1193985	684897	0	8
P-0075481-T01-IM7	SOMATIC	ALK	ALK	2	2	23402471	29416914	IGR: 206Kb before KLHL29(+)	Intron of ALK(-):126bp before exon 29		GRCh37	INVERSION	10	11	ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: c.4165-126:ALK_chr2:g.23402471inv	yes	unknown	6014443	103033	130180	0	11
P-0008322-T01-IM5	SOMATIC	ALK		2	2	29447302	82835552	Intron of ALK(-): 908bp before exon 20	IGR: 248Kb before LOC1720(+)		GRCh37	INVERSION			ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement : c.3173-908:ALK_chr2:g.82835552inv			53388250	327510	306168	0	141
P-0022509-T01-IM6	SOMATIC	ALK		2	2	29446658	153686528	Intron of ALK(-):264bp before exon 20	IGR: 112Kb before ARL6IP6(+)		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) Rearrangement : c.3173-264:ALK_chr2:g.153686528del			124239870	732678	559639	0	61
P-0022529-T01-IM6	SOMATIC	ALK		2	2	29447281	30245608	Intron of ALK(-):887bp before exon 20	IGR: 124Kb before YPEL5(+)		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) Rearrangement : c.3173-887:ALK_chr2:g.30245608del			798327	78105	85736	0	36
P-0023000-T01-IM6	SOMATIC	ALK		2	2	19979335	29448128	IGR: 89Kb before LINC00954(+)	Intron of ALK(-):198bp after exon 19		GRCh37	DUPLICATION			ALK-intragenic	PRECISE	5to3	ALK (NM_004304) rearrangement: chr2:g.19979335_c.3172+199:ALKdup			9468793	148540	175505	0	33
P-0026108-T01-IM6	SOMATIC	ALK		2	2	29448119	41387535	Intron of ALK(-):207bp after exon 19	IGR: 717Kb before LOC388942(+)		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: c.3172+208_chr2:g.41387535del			11939416	50582	88438	0	117
P-0033180-T01-IM6	SOMATIC	ALK		2	2	29443856	29446500	Intron of ALK(-):155bp before exon 23	Intron of ALK(-):106bp before exon 20		GRCh37	INVERSION			ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: c.3173-106_c.3516-155inv			2644	5432	6420	0	71
P-0040193-T01-IM6	SOMATIC	ALK		2	2	29448046	31931590	Intron of ALK(-):280bp after exon 19	IGR: 161Kb before MEMO1(-)		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: c.3172+281:ALK_chr2:g.31931590del			2483544	69632	53768	0	91
P-0042281-T01-IM6	SOMATIC	ALK		2	2	29448093	240030513	Intron of ALK(-):233bp after exon 19	Intron of HDAC4(-):634bp before exon 15		GRCh37	INVERSION			ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: c.3172+234:ALK_chr2:g.240030513inv			210582420	833073	307299	0	5
P-0048621-T01-IM6	SOMATIC	ALK		2	2	16609882	29450099	IGR: 121Kb before FAM49A(-)	Intron of ALK(-):159bp before exon 18		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: c.2915-159:ALK_chr2:g.16609882del			12840217	122254	192512	0	6
P-0049509-T02-IM6	SOMATIC	ALK		2	2	29447272	67748566	Intron of ALK(-):878bp before exon 20	IGR: 124Kb before ETAA1(+)		GRCh37	DELETION			ALK-intragenic	PRECISE	3to5	ALK (NM_004304) rearrangement: c.3173-878:ALK_chr2:g.67748566del			38301294	245929	340755	0	22
P-0068155-T02-IM7	SOMATIC	ALK		2	2	29448072	112450867	Intron of ALK(-):254bp after exon 19	IGR: 74Kb before ANAPC1(-)		GRCh37	INVERSION			ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: c.3172+255:ALK_chr2:g.112450867inv			83002795	715540	910279	0	42
P-0073868-T01-IM7	SOMATIC	ALK		10	2	100221181	29432930	Intron of HPSE2(-):2Kb before exon 12	Intron of ALK(-):186bp before exon 25		GRCh37	TRANSLOCATION			ALK-intragenic	PRECISE	3to3	ALK (NM_004304) rearrangement: t(2;10)(p23.2;q24.2)(chr2:g.29432930::chr10:g.100221181)			0	0	0	0	8
P-0085959-T03-IM7	SOMATIC	ALK		2	2	27930083	29450094	IGR: 44Kb before SLC4A1AP(+)	Intron of ALK(-):154bp before exon 18		GRCh37	INVERSION			ALK-intragenic	PRECISE	5to5	ALK (NM_004304) rearrangement: c.2915-154:ALK_chr2:g.27930083inv			1520011	42985	35313	0	3
P-0085831-T02-IM7	SOMATIC	ALK		2	2	29447074	227149510	Intron of ALK(-):680bp before exon 20	IGR: 142Kb before LOC646736(+)		GRCh37	INVERSION			ALK-intragenic	PRECISE	5to5	ALK (NM_004304) rearrangement: c.3173-680:ALK_chr2:g.227149510inv			197702436	924243	2137840	0	32
P-0024679-T01-IM6	SOMATIC	ALK	CTSE	2	1	29543594	206318648	Intron of ALK(-):22bp after exon 7	Intron of CTSE(+):181bp after exon 2		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	ALK (NM_004304) - CTSE(NM_001910) Rearrangement: t(1;2)(q32.1;p23.3)(chr1:g.206318648; chr2:g.29543594)			0	0	0	0	45
P-0008332-T01-IM5	SOMATIC	ALK	EML4	2	2	29446912	42523484	Intron of ALK(-): 518bp before exon 20	Intron of EML4(+): 828bp after exon 12		GRCh37	DUPLICATION	91	85	Antisense fusion	PRECISE	5to3	EML4 (NM_019063) - ALK (NM_004304) rearrangement :  c.1489+828:EML4_c.3173-518:ALKdup	yes	unknown	13076572	44905	54428	0	82
P-0055607-T02-IM6	SOMATIC	ALK	SOS1	2	2	29446585	39344711	Intron of ALK(-):191bp before exon 20	Intron of SOS1(-):3Kb after exon 1		GRCh37	INVERSION	10	119	Antisense Fusion	PRECISE	5to5	ALK (NM_004304) - SOS1 (NM_005633) rearrangement: c.3173-191:ALK_c.87+2766:SOS1inv	yes	unknown	9898126	118455	163521	0	134
P-0000058-T01-IM3	SOMATIC	ALK	DDX11L2	2	2	29446846	114360988	Intron of ALK(-): 452bp before exon 20	3-UTR of DDX11L2(-): 307bp after coding stop		GRCh37	INVERSION	47	6	DDX11L2-ALK fusion	35399162-N_bc20	5to5		yes	unknown	84914142	461680	505392	0	3
P-0040032-T01-IM6	SOMATIC	ALK		2	2	29446693	29449151	Intron of ALK(-):299bp before exon 20	Intron of ALK(-):636bp after exon 18		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	ALK (NM_004304) rearrangement: c.3067+637_c.3173-299del			2458	24179	20965	0	43
P-0018573-T01-IM6	SOMATIC	ALK	EML4	2	2	29474011	42523979	Exon 12 of ALK(-)	Intron of EML4(+):1Kb after exon 12		GRCh37	DELETION	10	52	EML4-ALK fusion	PRECISE	3to5	ALK (NM_004304) - EML4(NM_019063) rearrangement: c.2164_c.1489+1323del	yes	unknown	13049968	42482	110249	0	55
P-0019541-T01-IM6	SOMATIC	ALK	MYO3B	2	2	29447793	171124800	Intron of ALK(-):533bp after exon 19	Intron of MYO3B(+):32Kb after exon 7		GRCh37	DELETION	10	20	MYO3B-ALK fusion	PRECISE	3to5	ALK (NM_004304) - MYO3B (NM_138995) rearrangement: c.3172+534:ALK_c.749+32154:MYO3Bdel	yes	unknown	141677007	732072	539045	0	21
P-0020780-T01-IM6	SOMATIC	ALK	EML4	2	2	29447084	42523934	Intron of ALK(-):690bp before exon 20	Intron of EML4(+):1Kb after exon 12		GRCh37	INVERSION	10	100	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1 - 13 fused to ALK exons 20 - 29 ): c.1489+1278:EML4_c.3173-690:ALKinv	yes	unknown	13076850	124187	147040	0	98
P-0021495-T01-IM6	SOMATIC	ALK	EML4	2	2	29448313	42494226	Intron of ALK(-):13bp after exon 19	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION	10	26	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.493+2355:EML4_c.3172+14:ALKinv	yes	unknown	13045913	114740	103359	0	24
P-0022398-T01-IM6	SOMATIC	ALK	EML4	2	2	29448035	42500137	Intron of ALK(-):291bp after exon 19	Intron of EML4(+):8Kb before exon 6		GRCh37	INVERSION	10	76	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-7853:EML4_c.3172+292:ALKinv	yes	unknown	13052102	113319	131136	0	75
P-0022926-T01-IM6	SOMATIC	ALK	EML4	2	2	29446558	42492854	Intron of ALK(-):164bp before exon 20	Intron of EML4(+):983bp after exon 5		GRCh37	INVERSION	10	15	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.493+983:EML4_c.3173-164:ALKinv	yes	unknown	13046296	128137	157756	0	15
P-0023368-T01-IM6	SOMATIC	ALK	EML4	2	2	29446713	42498875	Intron of ALK(-):319bp before exon 20	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29 including the kinase domain) : c.667+7004:EML4_c.3173-319:ALKinv	yes	unknown	13052162	116001	125363	0	32
P-0021257-T01-IM6	SOMATIC	ALK	EML4	2	2	29447777	42543971	Intron of ALK(-):549bp after exon 19	Intron of EML4(+):595bp before exon 18		GRCh37	INVERSION	10	21	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-17 fused with ALK exons 20-29): c.1883-596:EML4_c.3172+550:ALKinv	yes	unknown	13096194	141194	77714	0	21
P-0024136-T01-IM6	SOMATIC	ALK	EML4	2	2	29448266	42503492	Intron of ALK(-):60bp after exon 19	Intron of EML4(+):4Kb before exon 6		GRCh37	INVERSION	10	61	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons  1-6 fused to ALK exons 20 -29): c.668-4498:EML4_c.3172+61:ALKinv	yes	unknown	13055226	114705	94009	0	61
P-0024907-T01-IM6	SOMATIC	ALK	EML4	2	2	29446877	42482651	Intron of ALK(-):483bp before exon 20	Intron of EML4(+):989bp before exon 3		GRCh37	INVERSION	10	109	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons  1-2 fused to ALK exons 20 -29): c.209-990:EML4_c.3173-483:ALKinv	yes	unknown	13035774	131646	160110	0	106
P-0025200-T01-IM6	SOMATIC	ALK	EML4	2	2	29448298	42498558	Intron of ALK(-):28bp after exon 19	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	6	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (AML4 exons 1-5 fused with ALK exons 20-29, including the kinase domain of ALK): c.667+6687:EML4_c.3172+29:ALKinv	yes	unknown	13050260	104729	143044	0	6
P-0015961-T01-IM6	SOMATIC	ALK	EML4	2	2	29446526	42501324	Intron of ALK(-):132bp before exon 20	Intron of EML4(+):7Kb before exon 6		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063)  - ALK (NM_004304 ) fusion (EML4 exon 6fused to ALK exon 20): c.668-6666:EML4_c.3173-132:ALKinv	yes	unknown	13054798	96101	184902	0	20
P-0016280-T01-IM6	SOMATIC	ALK	EML4	2	2	29447905	42525649	Intron of ALK(-):421bp after exon 19	Intron of EML4(+):3Kb before exon 13		GRCh37	INVERSION	10	28	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) rearrangement: c.1316-2732:EML4_c.3172+422:ALKinv	yes	unknown	13077744	97280	150371	0	26
P-0016580-T01-IM6	SOMATIC	ALK	EML4	2	2	29447579	42524913	Intron of ALK(-):747bp after exon 19	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	102	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+2257:EML4_c.3172+748:ALKinv	yes	unknown	13077334	77896	125134	0	102
P-0016960-T01-IM6	SOMATIC	ALK	EML4	2	2	29447838	42499324	Intron of ALK(-):488bp after exon 19	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	69	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7453:EML4_c.3172+489:ALKinv	yes	unknown	13051486	138105	139936	0	70
P-0017592-T01-IM5	SOMATIC	ALK	EML4	2	2	29447548	42502027	Intron of ALK(-):778bp after exon 19	Intron of EML4(+):6Kb before exon 6		GRCh37	INVERSION	10	46	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exon 1-5 fused with ALK exon 20-29) : c.494-5963:EML4_c.3172+779:ALKinv	yes	unknown	13054479	49556	85320	0	46
P-0017978-T01-IM6	SOMATIC	ALK	EML4	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	15	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7306:EML4_c.3173-215:ALKinv	yes	unknown	13052568	144205	118332	0	18
P-0018242-T01-IM6	SOMATIC	ALK	EML4	2	2	29448007	42500430	Intron of ALK(-):319bp after exon 19	Intron of EML4(+):8Kb before exon 6		GRCh37	INVERSION	10	126	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused in-frame with ALK exons 20-29): c.668-7560:EML4_c.3172+320:ALKinv	yes	unknown	13052423	98526	117529	0	124
P-0018280-T01-IM6	SOMATIC	ALK	EML4	2	2	29447187	42501198	Intron of ALK(-):793bp before exon 20	Intron of EML4(+):7Kb before exon 6		GRCh37	INVERSION	10	17	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exon 6 fused with ALK exon 20): c.494-6792:EML4_c.3173-793:ALKinv	yes	unknown	13054011	81440	92484	0	17
P-0019491-T01-IM6	SOMATIC	ALK	EML4	2	2	29446596	42527895	Intron of ALK(-):202bp before exon 20	Intron of EML4(+):485bp before exon 13		GRCh37	INVERSION	10	80	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 with ALK exons 20-29): c.1490-486:EML4_c.3173-202:ALKinv	yes	unknown	13081299	138467	123890	0	80
P-0019533-T01-IM6	SOMATIC	ALK	EML4	2	2	29446494	42498708	Intron of ALK(-):100bp before exon 20	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	19	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29): c.667+6837:EML4_c.3173-100:ALKinv	yes	unknown	13052214	158246	167095	0	21
P-0019786-T01-IM6	SOMATIC	ALK	EML4	2	2	29447575	42543272	Intron of ALK(-):751bp after exon 19	Intron of EML4(+):82bp after exon 17		GRCh37	INVERSION	10	136	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused in-frame with ALK exons 20-29): c.2056+82:EML4_c.3172+752:ALKinv	yes	unknown	13095697	142367	128346	0	132
P-0020124-T01-IM6	SOMATIC	ALK	EML4	2	2	29447955	42523535	Intron of ALK(-):371bp after exon 19	Intron of EML4(+):879bp after exon 12		GRCh37	INVERSION	10	49	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused in-frame with ALK exons 20-29): c.1489+879:EML4_c.3172+372:ALKinv	yes	unknown	13075580	113548	57623	0	46
P-0020408-T01-IM6	SOMATIC	ALK	EML4	2	2	29446779	42523883	Intron of ALK(-):385bp before exon 20	Intron of EML4(+):1Kb after exon 12		GRCh37	INVERSION	10	60	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+1227:EML4_c.3173-385:ALKinv	yes	unknown	13077104	159261	123340	0	59
P-0027853-T01-IM6	SOMATIC	ALK	EML4	2	2	29447734	42553137	Intron of ALK(-):592bp after exon 19	Intron of EML4(+):156bp before exon 20		GRCh37	INVERSION	10	139	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20-29 ): c.2243-157:EML4_c.3172+593:ALKinv	yes	unknown	13105403	90814	137721	0	138
P-0028287-T01-IM6	SOMATIC	ALK	EML4	2	2	29446661	42505367	Intron of ALK(-):267bp before exon 20	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	39	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-2623:EML4_c.3173-267:ALKinv	yes	unknown	13058706	67780	101731	0	39
P-0020138-T01-IM6	SOMATIC	ALK	EML4	2	2	29447907	42504974	Intron of ALK(-):419bp after exon 19	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	10	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20 -29): c.668-3016:EML4_c.3172+420:ALKinv	yes	unknown	13057067	155492	110368	0	16
P-0021693-T01-IM6	SOMATIC	ALK	EML4	2	2	29447002	42526872	Intron of ALK(-):608bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	99	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-14 fused with ALK exons 20-29): c.1316-1509:EML4_c.3173-608:ALKinv	yes	unknown	13079870	119652	112829	0	112
P-0022101-T01-IM6	SOMATIC	ALK	EML4	2	2	29447759	42544057	Intron of ALK(-):567bp after exon 19	Intron of EML4(+):509bp before exon 18		GRCh37	INVERSION	10	15	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon18 fused with ALK exon 20): c.2057-510:EML4_c.2057-510:ALKinv	yes	unknown	13096298	129281	83601	0	13
P-0028541-T01-IM6	SOMATIC	ALK	EML4	2	2	29446922	42477458	Intron of ALK(-):528bp before exon 20	Intron of EML4(+):5Kb after exon 2		GRCh37	INVERSION	10	213	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused with ALK exons 20-29): c.208+4631:EML4_c.3173-528:ALKinv	yes	unknown	13030536	116268	158869	0	212
P-0029971-T01-IM6	SOMATIC	ALK	EML4	2	2	29447807	42507871	Intron of ALK(-):519bp after exon 19	Intron of EML4(+):118bp before exon 6		GRCh37	INVERSION	10	76	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-119:EML4_c.3172+520:ALKinv	yes	unknown	13060064	84614	152003	0	76
P-0028745-T01-IM6	SOMATIC	ALK	EML4	2	2	29447509	42525818	Intron of ALK(-):817bp after exon 19	Intron of EML4(+):3Kb before exon 13		GRCh37	INVERSION	10	134	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1523-2563:EML4_c.3172:ALKinv	yes	unknown	13078309	97887	107513	0	134
P-0029174-T01-IM6	SOMATIC	ALK	EML4	2	2	29446656	42552862	Intron of ALK(-):262bp before exon 20	Intron of EML4(+):168bp after exon 19		GRCh37	INVERSION	10	230	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-19 fused with ALK exons 20-29): c.2242+168:EML4_c.3173-262:ALKinv	yes	unknown	13106206	97945	162319	0	237
P-0029400-T01-IM6	SOMATIC	ALK	EML4	2	2	29447668	42523297	Intron of ALK(-):658bp after exon 19	Intron of EML4(+):641bp after exon 12		GRCh37	INVERSION	10	138	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1315+641:EML4_c.3172+659:ALKinv	yes	unknown	13075629	83225	132713	0	138
P-0029750-T01-IM6	SOMATIC	ALK	EML4	2	2	29446660	42525807	Intron of ALK(-):266bp before exon 20	Intron of EML4(+):3Kb before exon 13		GRCh37	INVERSION	10	88	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1490-2574:EML4_c.3173-266:ALKinv	yes	unknown	13079147	86506	102772	0	86
P-0031406-T01-IM6	SOMATIC	ALK	EML4	2	2	29446425	42505101	Intron of ALK(-):31bp before exon 20	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	84	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 with ALK exons 20-29): c.668-2889:EML4_c.3173-31:ALKinv	yes	unknown	13058676	106271	144564	0	85
P-0031827-T01-IM6	SOMATIC	ALK	EML4	2	2	29446700	42527708	Intron of ALK(-):306bp before exon 20	Intron of EML4(+):672bp before exon 13		GRCh37	INVERSION	10	11	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-673:EML4_c.3173-306:ALKinv	yes	unknown	13081008	102957	128818	0	11
P-0032170-T01-IM6	SOMATIC	ALK	EML4	2	2	29447695	42524478	Intron of ALK(-):631bp after exon 19	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	56	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1822:EML4_c.3172+632:ALKinv	yes	unknown	13076783	99838	75356	0	54
P-0032683-T01-IM6	SOMATIC	ALK	EML4	2	2	29447763	42526259	Intron of ALK(-):563bp after exon 19	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	11	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2122:EML4_c.3172+564:ALKinv	yes	unknown	13078496	98060	90366	0	11
P-0035085-T01-IM6	SOMATIC	ALK	EML4	2	2	29447079	42499232	Intron of ALK(-):685bp before exon 20	Intron of EML4(+):7Kb after exon 5		GRCh37	INVERSION	10	5	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20 - 29): c.667+7361:EML4_c.3173-685:ALKinv	yes	unknown	13052153	79957	35631	0	5
P-0034569-T02-IM6	SOMATIC	ALK	EML4	2	2	29446514	42553077	Intron of ALK(-):120bp before exon 20	Intron of EML4(+):216bp before exon 20		GRCh37	INVERSION	10	57	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20-29): c.2243-217:EML4_c.3173-120:ALKinv	yes	unknown	13106563	103943	116766	0	56
P-0035121-T01-IM6	SOMATIC	ALK	EML4	2	2	29447383	42503133	Intron of ALK(-):943bp after exon 19	Intron of EML4(+):5Kb before exon 6		GRCh37	INVERSION	10	25	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4857:EML4_c.3172+944:ALKinv	yes	unknown	13055750	104302	121303	0	24
P-0036106-T01-IM6	SOMATIC	ALK	EML4	2	2	29446930	42526326	Intron of ALK(-):536bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	80	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) -ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1490-2055:EML4_c.3173-536:ALKinv	yes	unknown	13079396	118925	112828	0	79
P-0036247-T01-IM6	SOMATIC	ALK	EML4	2	2	29447857	42522763	Intron of ALK(-):469bp after exon 19	Intron of EML4(+):107bp after exon 12		GRCh37	INVERSION	10	87	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+107:EML4_c.3172+470:ALKinv	yes	unknown	13074906	86156	58204	0	87
P-0027092-T01-IM6	SOMATIC	ALK	PLEKHH2	2	2	29446506	43922908	Intron of ALK(-):112bp before exon 20	Intron of PLEKHH2(+):545bp after exon 6		GRCh37	INVERSION	10	55	Protein Fusion: in frame  {PLEKHH2:ALK}	PRECISE	3to3	PLEKHH2 (NM_172069) - ALK (NM_004304) rearrangement: c.502+545: PLEKHH2_c.3173-112:ALKinv	yes	unknown	14476402	99442	82158	0	54
P-0002266-T01-IM3	SOMATIC	ALK	EML4	2	2	29447288	42473852	Intron of ALK(-): 894bp before exon 20	Intron of EML4(+): 1Kb after exon 2		GRCh37	INVERSION	14	4	Protein fusion: in frame (ALK-EML4)	PRECISE	5to5	ALK (NM_004304) and EML4 (NM_019063) reciprocal inversion (13026566bp):  c.3173-889:ALK_c.208+1022:EML4inv	yes	unknown	13026564	58234	57072	0	8
P-0012679-T01-IM5	SOMATIC	ALK	EML4	2	2	29447466	42525468	Intron of ALK(-): 861bp after exon 19	Intron of EML4(+): 3Kb after exon 12		GRCh37	INVERSION	141	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 with ALK exons 20-29): c.1489+2812:EML4_c.3172+861:ALKinv	yes	unknown	13078002	82797	72304	0	166
P-0011018-T01-IM5	SOMATIC	ALK	EML4	2	2	29448314	42506102	Intron of ALK(-): 13bp after exon 19	Intron of EML4(+): 2Kb before exon 6		GRCh37	INVERSION	76	32	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29)	yes	unknown	13057788	56577	56306	0	32
P-0010177-T01-IM5	SOMATIC	ALK	EML4	2	2	29447358	42525732	Intron of ALK(-): 964bp before exon 20	Intron of EML4(+): 3Kb before exon 13		GRCh37	INVERSION	54	41	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4  (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused in frame with ALK exons 20-29): c.1490-2649:EML4_c.3173-964:ALKinv	yes	unknown	13078374	77753	71389	0	40
P-0012778-T01-IM5	SOMATIC	ALK	EML4	2	2	29447442	42493191	Intron of ALK(-): 885bp after exon 19	Intron of EML4(+): 1Kb after exon 5		GRCh37	INVERSION	55	63	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1320:EML4_c.3172+885:ALKinv	yes	unknown	13045749	68961	64403	0	61
P-0013869-T01-IM5	SOMATIC	ALK	EML4	2	2	29446712	42528194	Intron of ALK(-): 318bp before exon 20	Intron of EML4(+): 187bp before exon 13		GRCh37	INVERSION	39	36	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1 to 13 with exons 20-29 of ALK) : c.1490-187:EML4_c.3173-318:ALKinv	yes	unknown	13081482	78356	62581	0	36
P-0013864-T01-IM5	SOMATIC	ALK	EML4	2	2	29448209	42523314	Intron of ALK(-): 118bp after exon 19	Intron of EML4(+): 658bp after exon 12		GRCh37	INVERSION	76	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1 to 13 with exons 20-29 of ALK) : c.1489+658:EML4_c.3172+118:ALKinv	yes	unknown	13075105	67582	66535	0	107
P-0010041-T01-IM5	SOMATIC	ALK	EML4	2	2	29447942	42501013	Intron of ALK(-): 385bp after exon 19	Intron of EML4(+): 7Kb before exon 6		GRCh37	INVERSION	83	69	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fuses with ALK exons 20-29) : c.701-6977:EML4_c.3172+385:ALKinv	yes	unknown	13053071	55743	58405	0	68
P-0009339-T01-IM5	SOMATIC	ALK	EML4	2	2	29447889	42501120	Intron of ALK(-): 438bp after exon 19	Intron of EML4(+): 7Kb before exon 6		GRCh37	INVERSION	142	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.668-6870:EML4_c.3172+438:ALKinv	yes	unknown	13053231	64410	61224	0	242
P-0009102-T01-IM5	SOMATIC	ALK	EML4	2	2	29446513	42528137	Intron of ALK(-): 119bp before exon 20	Intron of EML4(+): 244bp before exon 13		GRCh37	INVERSION	69	44	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused in frame with ALK exons 20-29, which include the ALK kinase domain): c.1490-244:EML4_c.3173-119:ALKinv	yes	unknown	13081624	55878	46817	0	43
P-0009343-T01-IM5	SOMATIC	ALK	EML4	2	2	29446521	42506897	Intron of ALK(-): 127bp before exon 20	Intron of EML4(+): 1Kb before exon 6		GRCh37	INVERSION	64	51	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.668-1093:EML4_c.3173-127:ALKinv	yes	unknown	13060376	100683	81631	0	31
P-0003913-T01-IM3	SOMATIC	ALK	EML4	2	2	29447211	42523334	Intron of ALK(-): 817bp before exon 20	Intron of EML4(+): 678bp after exon 12		GRCh37	INVERSION	91	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13076123	78053	51159	0	133
P-0003297-T01-IM5	SOMATIC	ALK	EML4	2	2	29448259	42504374	Intron of ALK(-): 68bp after exon 19	Intron of EML4(+): 4Kb before exon 6		GRCh37	INVERSION	41	27	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13056115	67717	63099	0	27
P-0000557-T01-IM3	SOMATIC	ALK	EML4	2	2	29446543	42494981	Intron of ALK(-): 149bp before exon 20	Intron of EML4(+): 3Kb after exon 5		GRCh37	INVERSION	19	10	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13048438	47557	38985	0	10
P-0006370-T01-IM5	SOMATIC	ALK	EML4	2	2	29448124	42526234	Intron of ALK(-): 203bp after exon 19	Intron of EML4(+): 2Kb before exon 13		GRCh37	INVERSION	106	64	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1490-2147:EML4_c.3172+203:ALKinv	yes	unknown	13078110	49279	60768	0	64
P-0009353-T01-IM5	SOMATIC	ALK	EML4	2	2	29446465	42494278	Intron of ALK(-): 71bp before exon 20	Intron of EML4(+): 2Kb after exon 5		GRCh37	INVERSION	24	14	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.667+2407:EML4_c.3173-71:ALKinv	yes	unknown	13047813	18565	9743	0	14
P-0006950-T01-IM5	SOMATIC	ALK	EML4	2	2	29447384	42524958	Intron of ALK(-): 943bp after exon 19	Intron of EML4(+): 2Kb after exon 12		GRCh37	INVERSION	90	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1489+2302:EML4_c.3172+943:ALKinv	yes	unknown	13077574	73718	45412	0	121
P-0003323-T01-IM5	SOMATIC	ALK	EML4	2	2	29447530	42492435	Intron of ALK(-): 797bp after exon 19	Intron of EML4(+): 564bp after exon 5		GRCh37	INVERSION	15	8	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13044905	27639	26604	0	7
P-0001811-T01-IM3	SOMATIC	ALK	EML4	2	2	29448205	42525322	Intron of ALK(-): 122bp after exon 19	Intron of EML4(+): 3Kb after exon 12		GRCh37	INVERSION	19	6	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) Inversion:  c.1315+2666:EML4_c.3172+122:ALKinv	yes	unknown	13077117	45511	48979	0	6
P-0003383-T01-IM5	SOMATIC	ALK	EML4	2	2	29447572	42525071	Intron of ALK(-): 755bp after exon 19	Intron of EML4(+): 2Kb after exon 12		GRCh37	INVERSION	55	45	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13077499	79994	76803	0	42
P-0003446-T01-IM5	SOMATIC	ALK	EML4	2	2	29446534	42523253	Intron of ALK(-): 140bp before exon 20	Intron of EML4(+): 597bp after exon 12		GRCh37	INVERSION	56	49	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13076719	75918	63443	0	77
P-0000732-T01-IM3	SOMATIC	ALK	EML4	2	2	29447537	42498669	Intron of ALK(-): 790bp after exon 19	Intron of EML4(+): 7Kb after exon 5		GRCh37	INVERSION	34	17	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13051132	39252	30226	0	15
P-0001532-T01-IM3	SOMATIC	ALK	EML4	2	2	29447553	42525673	Intron of ALK(-): 774bp after exon 19	Intron of EML4(+): 3Kb before exon 13		GRCh37	INVERSION	70	102	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13078120	95917	94542	0	115
P-0014310-T01-IM6	SOMATIC	ALK	EML4	2	2	29447544	42497999	Intron of ALK(-): 783bp after exon 19	Intron of EML4(+): 6Kb after exon 5		GRCh37	INVERSION	43	25	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused to ALK exons 20- 29): c.667+6128:EML4_c.3172+783:ALKinv	yes	unknown	13050455	111901	106781	0	24
P-0002266-T01-IM3	SOMATIC	ALK	EML4	2	2	29447283	42473849	Intron of ALK(-): 889bp before exon 20	Intron of EML4(+): 1Kb after exon 2		GRCh37	INVERSION	5	5	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13026566	58272	57102	0	8
P-0004218-T01-IM5	SOMATIC	ALK	EML4	2	2	29447087	42552850	Intron of ALK(-): 693bp before exon 20	Intron of EML4(+): 156bp after exon 19		GRCh37	INVERSION	61	49	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304)  Fusion (EML4 exon 20 fused with ALK exon 20) :  c.2068+156:EML4_c.3173-693:ALKinv	yes	unknown	13105763	57824	59445	0	48
P-0014385-T01-IM6	SOMATIC	ALK	EML4	2	2	29447676	42524546	Intron of ALK(-): 651bp after exon 19	Intron of EML4(+): 2Kb after exon 12		GRCh37	INVERSION	38	31	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+1890:EML4_c.3172+651:ALKinv	yes	unknown	13076870	165256	158231	0	31
P-0014270-T01-IM6	SOMATIC	ALK	EML4	2	2	29446679	42494165	Intron of ALK(-): 285bp before exon 20	Intron of EML4(+): 2Kb after exon 5		GRCh37	INVERSION	38	24	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused in-frame to ALK exons 20-29) : c.667+2294:EML4_c.3173-285:ALKinv	yes	unknown	13047486	127026	126808	0	23
P-0000474-T01-IM3	SOMATIC	ALK	EML4	2	2	29447002	42497097	Intron of ALK(-): 608bp before exon 20	Intron of EML4(+): 5Kb after exon 5		GRCh37	INVERSION	26	16	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13050095	65955	52938	0	14
P-0002024-T01-IM3	SOMATIC	ALK	EML4	2	2	29447133	42552725	Intron of ALK(-): 739bp before exon 20	Intron of EML4(+): 31bp after exon 19		GRCh37	INVERSION	19	6	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) inversion:   c.2242+31:EML4_c.3173-739:ALKinv	yes	unknown	13105592	50594	46776	0	5
P-0009241-T01-IM5	SOMATIC	ALK	EML4	2	2	29446533	42528304	Intron of ALK(-): 139bp before exon 20	Intron of EML4(+): 77bp before exon 13		GRCh37	INVERSION	2	14	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1490-77:EML4_c.3173-139:ALKinv	yes	unknown	13081771	38439	35817	0	9
P-0002217-T02-IM3	SOMATIC	ALK	EML4	2	2	29446594	42523244	Intron of ALK(-): 200bp before exon 20	Intron of EML4(+): 588bp after exon 12		GRCh37	INVERSION	26	16	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13076650	57365	53910	0	16
P-0005321-T01-IM5	SOMATIC	ALK	EML4	2	2	29448250	42528243	Intron of ALK(-): 77bp after exon 19	Intron of EML4(+): 138bp before exon 13		GRCh37	INVERSION	62	75	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304)  Fusion (EML4 exon 13 fused with ALK exon 20) :  c.2068+156:EML4_c.3173-693:ALKinv	yes	unknown	13079993	54026	59175	0	72
P-0013202-T01-IM5	SOMATIC	ALK	EML4	2	2	29447178	42494436	Intron of ALK(-): 784bp before exon 20	Intron of EML4(+): 3Kb after exon 5		GRCh37	INVERSION	65	69	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29): c.667+2565:EML4_c.3173-784:ALKinv	yes	unknown	13047258	63762	57833	0	68
P-0015110-T01-IM6	SOMATIC	ALK	EML4	2	2	29446518	42506264	Intron of ALK(-): 124bp before exon 20	Intron of EML4(+): 2Kb before exon 6		GRCh37	INVERSION	39	73	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1-5 with ALK exons 20-29) : c.668-1726:EML4_c.3173-124:ALKinv	yes	unknown	13059746	160477	131320	0	72
P-0015197-T01-IM6	SOMATIC	ALK	EML4	2	2	29448009	42505882	Intron of ALK(-): 318bp after exon 19	Intron of EML4(+): 2Kb before exon 6		GRCh37	INVERSION	74	49	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon 6 fused to ALK exon 20) : c.668-2108:EML4_c.3172+318:ALKinv	yes	unknown	13057873	97127	107968	0	49
P-0002613-T01-IM3	SOMATIC	ALK	EML4	2	2	29447199	42528199	Intron of ALK(-): 805bp before exon 20	Intron of EML4(+): 182bp before exon 13		GRCh37	INVERSION	11	5	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3		yes	unknown	13081000	70880	65945	0	5
P-0022138-T01-IM6	SOMATIC	ALK	EML4	2	2	29446584	42553384	Intron of ALK(-):190bp before exon 20	Exon 20 of EML4(+)		GRCh37	INVERSION	10	43	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused with ALK exons 20-29): c.2333:EML4_c.3173-190:ALKinv	yes	unknown	13106800	167919	160288	0	38
P-0018969-T01-IM6	SOMATIC	ALK	EML4	2	2	29448416	42527621	Exon 19 of ALK(-)	Intron of EML4(+):759bp before exon 13		GRCh37	INVERSION	10	21	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-760:EML4_c.3083:ALKinv	yes	unknown	13079205	157939	66199	0	19
P-0019513-T01-IM6	SOMATIC	ALK	EML4	2	2	29448403	42524934	Exon 19 of ALK(-)	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	134	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 19-29): c.1489+2278:EML4_c.3096:ALKinv	yes	unknown	13076531	123269	152756	0	130
P-0026657-T02-IM6	SOMATIC	ALK	EML4	2	2	29446952	42553363	Intron of ALK(-):558bp before exon 20	Exon 20 of EML4(+)		GRCh37	INVERSION	10	5	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fuses with ALK exons 20-29) : c.2312:EML4_c.3173-558:ALKinv	yes	unknown	13106411	119493	122922	0	5
P-0032518-T01-IM6	SOMATIC	ALK	EML4	2	2	29448359	42525263	Exon 19 of ALK(-)	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION	10	68	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion: c.1315+2607:EML4_c.3140:ALKinv	yes	unknown	13076904	100214	143148	0	68
P-0034450-T01-IM6	SOMATIC	ALK	EML4	2	2	29446354	42529087	Exon 20 of ALK(-)	Intron of EML4(+):555bp after exon 13		GRCh37	INVERSION	10	55	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon13 fused with ALK exons 20) : c.1641+555:EML4_c.3213:ALKinv	yes	unknown	13082733	112791	46713	0	52
P-0007705-T01-IM5	SOMATIC	ALK	EML4	2	2	29447417	42528485	Intron of ALK(-): 910bp after exon 19	Exon 13 of EML4(+)		GRCh37	INVERSION	119	102	Protein fusion: mid-exon (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1594:EML4_c.3172+910:ALKinv	yes	unknown	13081068	67739	65878	0	144
P-0007125-T01-IM5	SOMATIC	ALK	EML4	2	2	29446597	42528393	Intron of ALK(-): 203bp before exon 20	Exon 13 of EML4(+)		GRCh37	INVERSION	26	40	Protein fusion: mid-exon (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-14 with ALK exons 20-29) : c.1328:EML4_c.3173-203:ALKinv	yes	unknown	13081796	95649	91930	0	38
P-0003206-T01-IM5	SOMATIC	ALK	EML4	2	2	29448365	42492359	Exon 19 of ALK(-)	Intron of EML4(+): 488bp after exon 5		GRCh37	INVERSION	89	101	Protein fusion: mid-exon (EML4-ALK)	PRECISE	3to3		yes	unknown	13043994	62635	55899	0	128
P-0041438-T01-IM6	SOMATIC	ALK	TTC27	2	2	29447817	32871033	Intron of ALK(-):509bp after exon 19	Intron of TTC27(+):4Kb before exon 5		GRCh37	INVERSION	10	54	Protein Fusion: out of frame  {ALK:TTC27}	PRECISE	5to5	ALK (NM_004304) - TTC27 (NM_017735) rearrangement: c.3172+510:ALK_c.538-4165:TTC27inv	yes	unknown	3423216	70778	91526	0	73
P-0010978-T01-IM5	SOMATIC	ALK	EML4	2	2	29446414	42546901	Intron of ALK(-): 20bp before exon 20	Intron of EML4(+): 2Kb after exon 18		GRCh37	INVERSION	114	76	Protein fusion: out of frame (EML4-ALK)		3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused with ALK exons 20-29): c.2154+2237:EML4_c.3173-20:ALKinv	yes	unknown	13100487	0	48193		
P-0045557-T01-IM6	SOMATIC	ALK		4	2	90210936	29447286	5-UTR of GPRIN3(-):42Kb before coding start	Intron of ALK(-):892bp before exon 20		GRCh37	TRANSLOCATION			Transcript Fusion {GPRIN3:ALK}	PRECISE	5to3	ALK (NM_004304) rearrangement: t(2;4)(p23.2;q22.1)(chr2:g.29447286::chr4:g.90210936)			0	0	0	0	95
P-0035283-T01-IM6	SOMATIC	ALOX12B		17	17	6914967	7978842	3-UTR of ALOX12-AS1(-):686bp after coding stop	Intron of ALOX12B(-):70bp after exon 12		GRCh37	DELETION			ALOX12B-intragenic	IMPPRECISE	3to5	ALOX12B (NM_001139) rearrangement: c.1654+71:ALOX12B_chr17:g.6914967del			1063875	48991	50356	0	10
P-0046713-T01-IM6	SOMATIC	ALOX12B	LTBP3	17	11	7976987	65317075	Exon 13 of ALOX12B(-)	Intron of LTBP3(-):2Kb after exon 11		GRCh37	TRANSLOCATION	10	5	Antisense Fusion	PRECISE	5to5	ALOX12B (NM_001139) rearrangement: t(11;17)(q13.1;p13.1)(chr11:g.65317075::chr17:g.7976987)	yes	unknown	0	0	0	0	11
P-0048150-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	17	6943000	7983482	Intron of SLC16A13(+):81bp before exon 4	Intron of ALOX12B(-):70bp after exon 6		GRCh37	DELETION	10	19	Antisense Fusion	PRECISE	3to5	ALOX12B (NM_001139) rearrangement: c.754+71:ALOX12B_chr17:g.6943000del	yes	unknown	1040482	52201	29894	0	19
P-0072644-T01-IM7	SOMATIC	ALOX12B		17	17	6760237	7983150	5-UTR of ALOX12P2(+):43Kb before coding start	Exon 7 of ALOX12B(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	ALOX12B (NM_001139) rearrangement: c.864:ALOX12B_chr17:g.6760237del			1222913	68409	99257	0	98
P-0033465-T01-IM6	SOMATIC	ALOX12B		17	17	7980000	8029057	Exon 10 of ALOX12B(-)	Promoter of HES7(-):5Kb from tx start		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {ALOX12B:HES7}	PRECISE	5to3	ALOX12B (NM_001139) rearrangement: c.1337_chr17:g.8029057dup			49057	16436	26930	0	182
P-0030529-T01-IM6	SOMATIC	ALOXE3	AURKB	17	17	8022494	8110132	Promoter of ALOXE3(-):23Kb from tx start	Exon 6 of AURKB(-)		GRCh37	DUPLICATION	10	10	Protein Fusion: mid-exon  {ALOXE3:AURKB}	PRECISE	5to3	AURKB (NM_004217) rearrangemnet: chr17:g.8022494_c.473:AURKBdup	yes	unknown	87638	5628	4995	0	10
P-0052628-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63405633	63412087	3-UTR of AMER1(-):4Kb after coding stop	Exon 2 of AMER1(-)		GRCh37	DELETION	10	79	AMER1-intragenic	PRECISE	3to5	AMER1 (NM_152424) rearrangement: c.1080:AMER1_chrX:g.63405633del	yes	unknown	6454	17939	20763	0	81
P-0019062-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63411183	63413020	Exon 2 of AMER1(-)	Exon 2 of AMER1(-)		GRCh37	DELETION	10	24	Deletion within transcript : mid-exon	PRECISE	3to5	AMER1 (NM_152424) rearrangement: c.1984_c.147del	yes	unknown	1837	9278	5186	0	26
P-0045032-T01-IM6	SOMATIC	AMPH	KMT2C	7	7	38451758	151860755	Intron of AMPH(-):10Kb after exon 16	Exon 43 of KMT2C(-)		GRCh37	DUPLICATION	10	6	Protein Fusion: mid-exon  {AMPH:KMT2C}	PRECISE	5to3	AMPH (NM_001635) - KMT2C (NM_170606) rearrangement: c.1398+5667:AMPH_c.9907:KMT2Cdup	yes	unknown	113408997	430330	256129	0	7
P-0008023-T01-IM5	SOMATIC	ANKRD11		16	16	89300582	89347614	IGR: 5Kb after ZNF778(+)	Exon 9 of ANKRD11(-)		GRCh37	DUPLICATION			ANKRD11-intragenic	PRECISE	5to3	ANKRD11 (NM_013275) rearrangement: c.5336:ANKRD11_chr16:g.89300582dup			47032	16412	17763	0	7
P-0008840-T01-IM5	SOMATIC	ANKRD11		16	16	50994355	89351036	IGR: 176Kb before SALL1(-)	Exon 9 of ANKRD11(-)		GRCh37	DELETION			ANKRD11-intragenic	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: c.1914_chr16:g.50994355del			38356681	578894	515414	0	11
P-0012273-T01-IM5	SOMATIC	ANKRD11		16	13	89349155	29376791	Exon 9 of ANKRD11(-)	IGR: 103Kb before SLC46A3(-)		GRCh37	TRANSLOCATION			ANKRD11-intragenic	PRECISE	5to5	ANKRD11 (NM_013275) rearrangement: t(13;16)(q12.3;q24.3)(chr13:g.29376791::chr16:g.89349155 )			0	0	0	0	141
P-0034476-T01-IM6	SOMATIC	ANKRD11		17	16	79679431	89352516	5-UTR of SLC25A10(+):25bp before coding start	Exon 8 of ANKRD11(-)		GRCh37	TRANSLOCATION			ANKRD11-intragenic	PRECISE	5to3	ANKRD11 (NM_013275) Rearrangement : t(16,17)(q24.2,q25.3)(chr16:g.89352516::chr17:g.79679431)			0	0	0	0	23
P-0035779-T01-IM6	SOMATIC	ANKRD11		16	16	89305879	89337294	IGR: 22Kb before ZNF778(+)	Exon 12 of ANKRD11(-)		GRCh37	DELETION			ANKRD11-intragenic	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: c.7737:ANKRD11_chr16:g.89305879del			31415	2407	1096	0	5
P-0040116-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89357761	89434071	Intron of ANKRD11(-):170bp before exon 5	5-UTR of ANKRD11(-):99Kb before coding start		GRCh37	DELETION	10	2	Deletion within transcript	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: c.227-170:ANKRD11_chr16:g.89434071del	yes	unknown	76310	4582	4248	0	3
P-0051651-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89349471	89485425	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):151Kb before coding start		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: c.3479:ANKRD11_chr16:g.89485425del	yes	unknown	135954	36385	40348	0	15
P-0025791-T01-IM6	SOMATIC	ANKRD11		16	16	89351776	89458549	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):124Kb before coding start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: chr16:g.89458549_c.1174:ANKRD11del			106773	13682	15185	0	20
P-0013835-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89336886	89348804	Intron of ANKRD11(-): 339bp after exon 12	Exon 9 of ANKRD11(-)		GRCh37	DELETION	11	6	Deletion within transcript: mid-exon	PRECISE	3to5	ANKRD11 (NM_013275) rearrangement: c.4146_c.7806+339del	yes	unknown	11918	31287	36763	0	6
P-0075716-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89346425	89406848	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):72Kb before coding start		GRCh37	DUPLICATION	10	40	Duplication within transcript : mid-exon	PRECISE	5to3	ANKRD11 (NM_013275) rearrangement: c.6525:ANKRD11_chr16:g.89406848dup	yes	unknown	60423	33876	48102	0	40
P-0003625-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89346182	89512768	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-): 129Kb before coding start		GRCh37	DUPLICATION	25	23	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	166586	80348	56971	0	23
P-0046259-T01-IM6	SOMATIC	ANKRD11	PIEZO1	16	16	88829476	89334955	Intron of PIEZO1(-):14Kb before exon 2	Exon 13 of ANKRD11(-)		GRCh37	DELETION	10	19	Protein Fusion: mid-exon  {ANKRD11:PIEZO1}	PRECISE	3to5	ANKRD11 (NM_013275) - PIEZO1 (NM_001142864) rearrangement: c.7923:ANKRD11_c.65-13589:PIEZO1del	yes	unknown	505479	1018	846	0	26
P-0069169-T01-IM7	SOMATIC	ANKRD44	PAX8	2	2	113993268	197868615	Intron of PAX8(-):109bp before exon 9	Intron of ANKRD44(-):2Kb after exon 21		GRCh37	DELETION	0	5	Protein Fusion: in frame  {ANKRD44:PAX8}	IMPPRECISE	3to5	ANKRD44 (NM_001195144) - PAX8 (NM_003466) rearrangement: c.2347+1803:ANKRD44_c.899-109:PAX8del	yes	unknown	83875347	390727	304957	0	5
P-0032427-T01-IM6	SOMATIC	ANKS1B	PTPN11	12	12	99747283	112926289	Intron of ANKS1B(-):46Kb after exon 12	Exon 12 of PTPN11(+)		GRCh37	INVERSION	0	5	Protein Fusion: mid-exon  {PTPN11:ANKS1B}	IMPPRECISE	3to3	PTPN11 (NM_002834) - ANKS1B (NM_152788) rearrangement: c.1422:PTPN11_c.1756+46126:ANKS1Binv	yes	unknown	13179006	39575	58967	0	5
P-0044824-T01-IM6	SOMATIC	ANKS3	NCOA2								GRCh37				ANKS3-NCOA2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ANKS3-NCOA2 fusion. Note: The rearrangement is an out of frame fusion between genes ANKS3 Exon7 (NM_133450) and NCOA2 Exon16 (NM_006540). Note2: The functional significance of this fusion event is unknown.	yes	unknown					
P-0013772-T01-IM5	SOMATIC	ANXA10	FAT1	4	4	169043150	187542027	Intron of ANXA10(+): 6Kb before exon 2	Exon 10 of FAT1(-)		GRCh37	INVERSION	32	21	Protein fusion: mid-exon (ANXA10-FAT1)	PRECISE	3to3	ANXA10 (NM_007193) - FAT1 (NM_005245) rearrangement: c.19-6085:ANXA10_c.5713:FAT1inv	yes	unknown	18498877	98043	92033	0	15
P-0014026-T01-IM5	SOMATIC	APC	REEP5	5	5	112175655	112230071	Exon 16 of APC(+)	Intron of REEP5(-): 7Kb before exon 4		GRCh37	DELETION	103	86	Antisense fusion	PRECISE	3to5	APC(NM_000038) - REEP5(NM_005669)  rearrangement: c.4364:APC_c.352-7191:REEP5del	yes	unknown	54416	47108	27367	0	84
P-0037673-T01-IM6	SOMATIC	APC	APC	22	5	29065471	112175871	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	10	19	Antisense Fusion	PRECISE	5to3	APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112175871::chr22:g.29065471)	yes	unknown	0	0	0	0	20
P-0044143-T01-IM6	SOMATIC	APC		22	5	29065511	112173427	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)		GRCh37	TRANSLOCATION			Antisense Fusion	IMPPRECISE	5to3	APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112173427::chr22:g.29065511)			0	0	0	0	31
P-0001204-T01-IM3	SOMATIC	APC	APC	5	5	112179446	112183450	Exon 16 of APC(+)	IGR: 2Kb after APC(+)		GRCh37	DELETION	41	15	APC-intragenic	PRECISE	3to5	APC (NM_000038) Deletion (4004bp) : c.8155_g.112183450del	yes	unknown	4004	3481	3299	0	20
P-0018329-T01-IM6	SOMATIC	APC	APC	5	5	112174872	112175749	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	INVERSION	10	7	APC-intragenic	PRECISE	5to5	APC (NM_000038) rearrangement: c.3581_c.4458inv	yes	unknown	877	3464	2568	0	7
P-0039282-T01-IM6	SOMATIC	APC	APC	5	5	111430124	112174664	IGR: 66Kb before EPB41L4A-AS1(+)	Exon 16 of APC(+)		GRCh37	DUPLICATION	10	49	APC-intragenic	PRECISE	5to3	APC (NM_000038) rearrangement: c.3373:APC_chr5:g.111430124dup	yes	unknown	744540	22951	18228	0	50
P-0045661-T01-IM6	SOMATIC	APC	APC	5	5	77595801	112154997	IGR: 59Kb before SCAMP1-AS1(-)	Exon 10 of APC(+)		GRCh37	INVERSION	10	55	APC-intragenic	PRECISE	3to3	APC (NM_000038) rearrangement: c.1268:APC_chr5:g.77595801inv	yes	unknown	34559196	57215	74210	0	59
P-0052972-T01-IM6	SOMATIC	APC	MAGI3	5	1	112162850	114220342	Exon 12 of APC(+)	Intron of MAGI3(+):3Kb before exon 20		GRCh37	TRANSLOCATION	10	15	APC-intragenic	PRECISE	5to5	APC (NM_000038) rearrangement: t(1;5)(p13.2;q22.2)(chr1:g.114220342::chr5:g.112162850)	yes	unknown	0	0	0	0	15
P-0024513-T01-IM6	SOMATIC	APC	KCNN2	5	5	112102978	113610357	Exon 4 of APC(+)	IGR: 88Kb before KCNN2(+)		GRCh37	DELETION	10	5	APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.313:APC_chr5:g.113610357del	yes	unknown	1507379	45947	33516	0	5
P-0040853-T01-IM6	SOMATIC	APC	RBM22	5	5	112157631	150062097	Exon 11 of APC(+)	IGR: 8Kb before RBM22(-)		GRCh37	DELETION	0	7	APC-intragenic	IMPPRECISE	3to5	APC (NM_000038) rearrangement: c.1351:APC_chr5:g.150062097del	yes	unknown	37904466	203972	213878	0	7
P-0065854-T02-IM7	SOMATIC	APC	APC	5	5	112174534	112181557	Exon 16 of APC(+)	3-UTR of APC(+):91Kb after coding stop		GRCh37	DELETION	10	37	APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.3243:APC_chr5:g.112181557del	yes	unknown	7023	23802	12073	0	37
P-0076939-T01-IM7	SOMATIC	APC	APC	X	5	11731437	112175857	IGR: 45Kb before MSL3(+)	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	0	11	APC-intragenic	IMPPRECISE	3to5	APC (NM_000038) rearrangement: t(5;X)(q22.2;p22.2)(chr5:g.112175857::chrX:g.11731437)	yes	unknown	0	0	0	0	15
P-0071439-T01-IM7	SOMATIC	APC	DTWD2	5	5	112175479	118055659	Exon 16 of APC(+)	IGR: 117Kb before DTWD2(-)		GRCh37	INVERSION	10	22	APC-intragenic	PRECISE	5to5	APC (NM_000038) rearrangement: c.4188:APC_chr5:g.118055659inv	yes	unknown	5880180	34094	24942	0	32
P-0010252-T01-IM5	SOMATIC	APC		10	5	11385531	112102954	IGR: 7Kb after CELF2(+)	Exon 4 of APC(+)		GRCh37	TRANSLOCATION			APC-intragenic	PRECISE	3to3	APC (NM_000038) rearrangement: t(5;10)(q22.2;p14)(chr5:g.112102954::chr10:g.11385531)			0	0	0	0	69
P-0012914-T01-IM5	SOMATIC	APC		5	5	92746031	112175823	3-UTR of FLJ42709(-): 160Kb after coding stop	Exon 16 of APC(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: chr5:g.92746031_c.4532del			19429792	71529	113118	0	22
P-0013828-T01-IM5	SOMATIC	APC		5	5	95664163	112102926	IGR: 62Kb before PCSK1(-)	Exon 4 of APC(+)		GRCh37	DUPLICATION			APC-intragenic	PRECISE	5to3	APC (NM_000038) rearrangement: chr5:g.95664163_c.261:APCdup			16438763	11763	11366	0	31
P-0017899-T01-IM6	SOMATIC	APC		14	5	59220719	112174171	IGR: 74Kb before LINC01500(+)	Exon 16 of APC(+)		GRCh37	TRANSLOCATION			APC-intragenic	PRECISE	3to3	APC (NM_000038) Rearrangement: t(5;14)(q22.1;q23.1)(chr5:g.112174171::chr14:g.59220719)			0	0	0	0	5
P-0020791-T01-IM6	SOMATIC	APC		5	5	112176035	112192034	Exon 16 of APC(+)	IGR: 5Kb before SRP19(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.4744_g.112192034del			15999	23542	17449	0	10
P-0023588-T01-IM6	SOMATIC	APC		5	5	112176005	112187884	Exon 16 of APC(+)	IGR: 9Kb before SRP19(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) Rearrangement : c.4714:APC_chr5:g.112187884del			11879	22138	16957	0	14
P-0025168-T01-IM6	SOMATIC	APC		8	5	61579704	112043422	IGR: 12Kb before CHD7(+)	Exon 1 of APC(+)		GRCh37	TRANSLOCATION			APC-intragenic	PRECISE	5to5	APC (NM_000038) rearrangement: t(5;8)(q22.2;q12.1)(chr5:g.112043422::chr8:g.61579704)			0	0	0	0	95
P-0033429-T01-IM6	SOMATIC	APC		14	5	59220602	112175465	IGR: 74Kb before LINC01500(+)	Exon 16 of APC(+)		GRCh37	TRANSLOCATION			APC-intragenic	PRECISE	5to5	APC (NM_000038) Rearrangement: t(5;14)(q22.2;q23.1)(chr5:g.112175465::chr14:g.59220602)			0	0	0	0	17
P-0035867-T01-IM6	SOMATIC	APC		5	5	112175796	112181350	Exon 16 of APC(+)	3-UTR of APC(+):91Kb after coding stop		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.4505:APC_chr5:g.112181350del			5554	15403	10858	0	20
P-0050927-T01-IM6	SOMATIC	APC		5	5	112157765	112191982	Intron of APC(+):77bp after exon 11	IGR: 5Kb before SRP19(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.1408+77:APC_chr5:g.112191982del			34217	24905	13960	0	47
P-0064396-T01-IM7	SOMATIC	APC		5	5	112179807	112190245	Exon 16 of APC(+)	IGR: 7Kb before SRP19(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.8516:APC_chr5:g.112190245del			10438	507	305	0	13
P-0071168-T01-IM7	SOMATIC	APC		5	5	112012154	112126298	3-UTR of LOC102467216(-):6Kb after coding stop	Intron of APC(+):2Kb before exon 7		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.646-1845:APC_chr5:g.112012154del			114144	9346	7992	0	6
P-0083822-T01-IM7	SOMATIC	APC		5	1	112164557	104537286	Exon 14 of APC(+)	IGR: 78Kb before LOC100129138(+)		GRCh37	TRANSLOCATION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: t(1;5)(p21.1;q22.2)(chr1:g.104537286::chr5:g.112164557)			0	0	0	0	5
P-0028151-T04-IM7	SOMATIC	APC		5	5	112170830	121173384	Exon 15 of APC(+)	IGR: 14Kb before FTMT(+)		GRCh37	DELETION			APC-intragenic	PRECISE	3to5	APC (NM_000038) rearrangement: c.1926:APC_chr5:g.121173384del			9002554	47974	77839	0	5
P-0086587-T01-IM7	SOMATIC	APC		5	5	107153608	112176208	IGR: 41Kb before FBXL17(-)	Exon 16 of APC(+)		GRCh37	INVERSION			APC-intragenic	PRECISE	3to3	APC (NM_000038) rearrangement: c.4917:APC_chr5:g.107153608inv			5022600	54112	69637	0	71
P-0071345-T01-IM7	SOMATIC	APC	APC	5	5	112103198	112115524	Intron of APC(+):111bp after exon 4	Intron of APC(+):962bp before exon 6		GRCh37	DELETION	10	9	Deletion of 1 exon : out of frame	PRECISE	3to5	APC (NM_000038) rearrangement: c.422+111_c.532-963del	yes	unknown	12326	1142	328	0	10
P-0017807-T01-IM6	SOMATIC	APC	APC	5	5	112175216	112183880	Exon 16 of APC(+)	Promoter of APC(+):110Kb from tx start		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) Rearrangement: c.3925_c.*4057del	yes	unknown	8664	20707	8100	0	7
P-0020245-T01-IM6	SOMATIC	APC	APC	5	5	112175312	112176877	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4021_c.5586del	yes	unknown	1565	7614	6394	0	10
P-0027647-T01-IM6	SOMATIC	APC	APC	5	5	112092099	112178051	Intron of APC(+):1Kb after exon 2	Exon 16 of APC(+)		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.135+1377_c.6760del	yes	unknown	85952	24067	21529	0	11
P-0029298-T01-IM6	SOMATIC	APC	APC	5	5	112175014	112182190	Exon 16 of APC(+)	Promoter of APC(+):109Kb from tx start		GRCh37	DELETION	10	73	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.3723_c.*2367del	yes	unknown	7176	17330	6565	0	72
P-0034177-T01-IM6	SOMATIC	APC	APC	5	5	112169921	112175331	Intron of APC(+):726bp before exon 15	Exon 16 of APC(+)		GRCh37	DELETION	5	6	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038 rearrangement: c.1744-727_c.4040del	yes	unknown	5410	11156	14005	0	6
P-0036892-T01-IM6	SOMATIC	APC	APC	5	5	112175480	112177756	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	10	61	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) Rearrangement : c.4189_c.6465del	yes	unknown	2276	6443	5712	0	62
P-0033816-T01-IM6	SOMATIC	APC	APC	5	5	112175840	112178984	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	10	48	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) Rearrangement : c.4549_c.7693del	yes	unknown	3144	11451	7041	0	54
P-0037370-T01-IM6	SOMATIC	APC	APC	5	5	112175835	112177457	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4544_c.6166del	yes	unknown	1622	4217	4052	0	17
P-0046628-T01-IM6	SOMATIC	APC	APC	5	5	112163900	112177516	Intron of APC(+):197bp after exon 13	Exon 16 of APC(+)		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.1626+197_c.6225del	yes	unknown	13616	18636	14635	0	13
P-0022184-T01-IM6	SOMATIC	APC	APC	5	5	112173820	112177483	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	0	6	Deletion within transcript : mid-exon	IMPPRECISE	3to5	APC (NM_000038) rearrangement: c.2529_c.6192del	yes	unknown	3663	15693	11886	0	6
P-0064460-T01-IM7	SOMATIC	APC	APC	5	5	112175183	112176923	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	9	8	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.3892_c.5632del	yes	unknown	1740	11162	14383	0	8
P-0068069-T01-IM7	SOMATIC	APC	APC	5	5	112175235	112178204	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	10	60	Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.3944_c.6913del	yes	unknown	2969	18000	7739	0	65
P-0032702-T01-IM6	SOMATIC	APC		5	5	112173005	112174729	Intron of APC(+):244bp before exon 16	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.1959-245_c.3438del			1724	4686	4613	0	3
P-0045660-T01-IM6	SOMATIC	APC		5	5	112175494	112178976	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4203_c.7685del			3482	9153	3514	0	22
P-0067489-T01-IM7	SOMATIC	APC		5	5	112175170	112177604	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.3879_c.6313del			2434	10803	4679	0	105
P-0072074-T01-IM7	SOMATIC	APC		5	5	112175702	112176840	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	APC (NM_000038) rearrangement: c.4411_c.5549del			1138	4903	9188	0	15
P-0083561-T01-IM7	SOMATIC	APC		5	5	112175447	112177968	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4156_c.6677del			2521	13207	8976	0	35
P-0080632-T01-IM7	SOMATIC	APC		5	5	112175493	112178624	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4202_c.7333del			3131	17681	9882	0	7
P-0010238-T01-IM5	SOMATIC	APC	APC	5	5	112174447	112176171	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	125	99	Deletion within transcript: mid-exon	PRECISE	3to5	APC (NM_000038) Rearrangement : c.3156_4880del	yes	unknown	1724	12737	1999	0	99
P-0009842-T01-IM5	SOMATIC	APC	APC	5	5	112173724	112177518	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	22	14	Deletion within transcript: mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.2433_c.6227del	yes	unknown	3794	20951	20168	0	14
P-0006681-T01-IM5	SOMATIC	APC	APC	5	5	112172048	112173268	Intron of APC(+): 1Kb after exon 15	Exon 16 of APC(+)		GRCh37	DELETION	57	33	Deletion within transcript: mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement : c.1958+1186_977del	yes	unknown	1220	512	123	0	33
P-0009741-T01-IM5	SOMATIC	APC	APC	5	5	112175874	112177321	Exon 16 of APC(+)	Exon 16 of APC(+)		GRCh37	DELETION	27	17	Deletion within transcript: mid-exon	PRECISE	3to5	APC (NM_000038) rearrangement: c.4583_c.6030del	yes	unknown	1447	9139	8376	0	17
P-0042166-T01-IM6	SOMATIC	APC		5	5	112154735	112157593	Exon 10 of APC(+)	Exon 11 of APC(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	APC (NM_000038) rearrangement: c.1006_c.1313dup			2858	2827	4582	0	56
P-0008978-T01-IM5	SOMATIC	APC	APC	5	5	112073019	112175702	5-UTR of APC(+): 18Kb before coding start	Exon 16 of APC(+)		GRCh37	DUPLICATION	79	102	Duplication within transcript: mid-exon	PRECISE	5to3	APC (NM_000038) rearrangement: c.-622_c.4411dup	yes	unknown	102683	49950	63500	0	128
P-0048907-T01-IM6	SOMATIC	APC	CREB5	7	5	28535020	112174029	Intron of CREB5(+):403bp after exon 3	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	10	11	Protein Fusion: mid-exon  {APC:CREB5}	PRECISE	5to3	APC (NM_000038) - CREB5 (NM_182898) rearrangement: t(5;7)(q22.2;p15.1)(chr5:g.112174029::chr7:g.28535020)	yes	unknown	0	0	0	0	11
P-0020290-T01-IM6	SOMATIC	APC	SRP19	5	5	112175749	112194235	Exon 16 of APC(+)	Promoter of SRP19(+):3Kb from tx start		GRCh37	DELETION	10	17	Protein Fusion: mid-exon  {APC:SRP19}	PRECISE	3to5	APC (NM_000038) rearrangement: c.4458_chr5:g.112194235inv	yes	unknown	18486	23189	27424	0	18
P-0034289-T01-IM6	SOMATIC	APC	SRP19	5	5	112175615	112194400	Exon 16 of APC(+)	Promoter of SRP19(+):2Kb from tx start		GRCh37	DELETION	10	35	Protein Fusion: mid-exon  {APC:SRP19}	PRECISE	3to5	APC (NM_000038) rearrangement: c.4324:APC_chr5:g.112194400del	yes	unknown	18785	15530	6041	0	35
P-0032827-T01-IM6	SOMATIC	APC	SRP19	5	5	112176002	112200782	Exon 16 of APC(+)	Intron of SRP19(+):353bp after exon 4		GRCh37	DELETION	10	4	Protein Fusion: mid-exon  {APC:SRP19}	PRECISE	3to5	APC (NM_000038) rearrangement: c.4711:APC_chr5:g.112200782del	yes	unknown	24780	12579	3983	0	4
P-0037494-T01-IM6	SOMATIC	APC	SRP19	5	5	112173333	112195853	Exon 16 of APC(+)	Promoter of SRP19(+):1Kb from tx start		GRCh37	DELETION	0	5	Protein Fusion: mid-exon  {APC:SRP19}	IMPPRECISE	3to5	APC (NM_000038) - SRP19 (NM_001204199) Rearrangement: c.2042:APC_c.-1221:SRP19del	yes	unknown	22520	20804	26996	0	6
P-0071654-T01-IM7	SOMATIC	APC	SRP19	5	5	112173509	112205451	Exon 16 of APC(+)	Intron of SRP19(+):5Kb after exon 4		GRCh37	DELETION	10	31	Protein Fusion: mid-exon  {APC:SRP19}	PRECISE	3to5	APC (NM_000038) - SRP19 (NM_001204199) rearrangement: c.2218:APC_c.301+5022:SRP19del	yes	unknown	31942	32435	4079	0	34
P-0032269-T01-IM6	SOMATIC	APC		5	5	112175780	112196053	Exon 16 of APC(+)	Promoter of SRP19(+):831bp from tx start		GRCh37	DELETION			Protein Fusion: mid-exon  {APC:SRP19}	PRECISE	3to5	APC (NM_000038) rearrangement: c.4489_chr5:g.112196053del			20273	10841	6224	0	52
P-0020189-T01-IM6	SOMATIC	APC	WDFY3-AS2	5	4	112175197	85927495	Exon 16 of APC(+)	5-UTR of WDFY3-AS2(+):673bp before coding start		GRCh37	TRANSLOCATION	10	24	Protein Fusion: mid-exon  {WDFY3-AS2:APC}	PRECISE	5to3	APC (NM_000038) Rearrangement: t(4,5)(q21.23,q22.1)(chr4:g.85927495::chr5:g.112175197)	yes	unknown	0	0	0	0	24
P-0008948-T01-IM5	SOMATIC	APC	MCC	5	5	112179408	112387142	Exon 16 of APC(+)	Intron of MCC(-): 2Kb before exon 14		GRCh37	INVERSION			Protein fusion: mid-exon (APC-MCC)	PRECISE	3to3	APC (NM_000038) - MCC (NM_001085377) Rearrangement :  c.8117:APC_c.2449-2146:MCC inv			207734	14097	15690	0	26
P-0086381-T01-IM7	SOMATIC	APLNR	DOPEY1	11	6	57003763	83805944	Exon 1 of APLNR(-)	5-UTR of DOPEY1(+):752bp before coding start		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {APLNR:DOPEY1}	PRECISE	5to5	APLNR (NM_005161) - DOPEY1 (NM_001199942) rearrangement: t(6;11)(q14.1;q12.1)(chr6:g.83805944::chr11:g.57003763)			0	0	0	0	53
P-0086557-T03-IM7	SOMATIC	APOLD1	CDKN1B	12	12	12871757	12881662	Intron of CDKN1B(+):1bp before exon 2	Intron of APOLD1(+):3Kb after exon 1		GRCh37	DUPLICATION			Protein Fusion: out of frame  {APOLD1:CDKN1B}	PRECISE	5to3	APOLD1 (NM_001130415) - CDKN1B (NM_004064) rearrangement: c.96+2632:APOLD1_c.476-2:CDKN1Bdup			9905	3069	3718	0	10
P-0055009-T01-IM6	SOMATIC	AR	SPARC	X	5	66931564	151046748	Intron of AR(+):33bp after exon 4	Intron of SPARC(-):279bp after exon 7		GRCh37	TRANSLOCATION	10	41	Antisense Fusion	PRECISE	3to5	AR (NM_000044) rearrangement: t(5;X)(q33.1;q12)(chr5:g.151046748::chrX:g.66931564)	yes	unknown	0	0	0	0	41
P-0068289-T01-IM7	SOMATIC	AR	ABLIM1	X	10	66941798	116193983	Exon 6 of AR(+)	3-UTR of ABLIM1(-):2Kb after coding stop		GRCh37	TRANSLOCATION			AR-ABLIM1 Fusion	PRECISE	3to3	AR (NM_000044) rearrangement: t(10;X)(q25.3;q12)(chr10:g.116193983::chrX:g.66941798)			0	0	0	0	23
P-0035167-T01-IM6	SOMATIC	AR	CYSLTR1	X	X	66931545	77626841	Intron of AR(+):14bp after exon 4	IGR: 100Kb before CYSLTR1(-)		GRCh37	DELETION			AR-CYSLTR1 Fusion	PRECISE	3to5	AR (NM_000044) rearrangement: c.2173+14:AR_chrX:g.77626841del			10695296	118122	172979	0	27
P-0008344-T01-IM5	SOMATIC	AR	AR	X	X	66673283	66931407	IGR: 91Kb before AR(+)	Exon 4 of AR(+)		GRCh37	DUPLICATION	63	52	AR-intragenic	PRECISE	5to3	AR (NM_000044) Rearrangement : chrX:g.66673283_c.2049:ARdup	yes	unknown	258124	21875	108790	0	51
P-0005452-T01-IM5	SOMATIC	AR	AR	X	X	66753057	66766119	IGR: 11Kb before AR(+)	Exon 1 of AR(+)		GRCh37	DELETION	19	20	AR-intragenic	PRECISE	3to5	AR (NM_000044) Rearrangement : chrX:g.66753057_c.1131:ARdel	yes	unknown	13062	14324	13454	0	19
P-0016746-T01-IM6	SOMATIC	AR	AR	X	X	66935482	66937337	Intron of AR(+):2Kb before exon 5	Exon 5 of AR(+)		GRCh37	INVERSION	10	17	AR-intragenic	PRECISE	5to5	AR (NM_000044)  Rearrangement : c.2174-1838_c.2191inv	yes	unknown	1855	210	305	0	17
P-0034944-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0040753-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7)  PMID: 26554309, 19117982	yes	unknown					
P-0041410-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:      AR (NM_000044) Variant 7 (AR V-7)    PMID: 26554309, 19117982	yes	unknown					
P-0041433-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:      AR (NM_000044) Variant 7 (AR V-7)    PMID: 26554309, 19117982	yes	unknown					
P-0041955-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:      AR (NM_000044) Variant 7 (AR V-7)    PMID: 26554309, 19117982	yes	unknown					
P-0044810-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT: Androgen Receptor variant 7 transcript (AR-V7).  PMID: 19117982	yes	unknown					
P-0046799-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0047347-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0048264-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0050072-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982  Note: The isoform was detected with low frequency.	yes	unknown					
P-0051180-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 , 26554309	yes	unknown					
P-0051702-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0052057-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982  Note: The AR version 7 transcript is seen in a low percentage (approximately 5%) of reads. This may represent a subclonal event. Confirmatory testing via alternative methodology is recommended if clinically indicated.	yes	unknown					
P-0053407-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM: AR-V7 (NM_000044).	yes	unknown					
P-0054975-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7)  PMID: 19117982	yes	unknown					
P-0056107-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0056678-T02-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 , 26554309	yes	unknown					
P-0039618-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:    Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0044040-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 Note:Present at low frequency. POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_001195478) and GPR128 Exon2 (NM_032787). PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0044043-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:    Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0047803-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:     Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0048986-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0049146-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982 Note: this event was present at low frequency.	yes	unknown					
P-0051450-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982  POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: RAB11FIP1-FGFR1 fusion. Note: The rearrangement is an in-frame fusion between genes RAB11FIP1 Exon1 (NM_001002814) and FGFR1 Exon2 (NM_015850). Note2: This event was detected with low frequency. Confirmatory testing on alternate specimen is indicated.	yes	unknown					
P-0051740-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982  POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited  PMID: 19797732	yes	unknown					
P-0052326-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0053697-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0060304-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:         AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0063512-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0063161-T02-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0064419-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0064886-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0072572-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982	yes	unknown					
P-0074021-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0074171-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0034683-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0036702-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0038588-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ATG7-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes ATG7 Exon18 (NM_006395) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0047012-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:     Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0047732-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:    Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0047742-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:    Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0049183-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0049363-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0056667-T02-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:        AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0027193-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING INVESTIGATIONAL EVENT:  Androgen Receptor variant 7 transcript (AR-V7). PMID: 19117982	yes	unknown					
P-0039776-T02-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0063282-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982  Note: This event was detected with low supporting reads and the functional significance is unknown.	yes	unknown					
P-0071510-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0072769-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:           AR (NM_000044) Variant 7 (AR V-7)     PMID: 26554309, 19117982	yes	unknown					
P-0034020-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0035619-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982	yes	unknown					
P-0050277-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0052905-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0035484-T01-IM6	SOMATIC	AR									GRCh37				AR-intragenic - Archer			DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982	yes	unknown					
P-0070771-T01-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTK2-ETV5 fusion. Note: The rearrangement is an in-frame fusion between genes PTK2 Exon14 (NM_005607) and ETV5 Exon2 (NM_004454). Note1: The functional significance of this event is unknown.	yes	unknown					
P-0065074-T02-IM7	SOMATIC	AR									GRCh37				AR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: FUT10-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes FUT10 Exon3 (NM_032664) and NRG1 Exon2 (NM_004495). Note1: The functional significance of this event is unknown.	yes	unknown					
P-0023666-T01-IM6	SOMATIC	AR	AR	X	X	66935630	66943365	Intron of AR(+):2Kb before exon 5	Intron of AR(+):162bp before exon 8		GRCh37	DELETION	9	6	Deletion of 3 exons : out of frame	PRECISE	3to5	AR (NM_000044) rearrangement: c.2174-1690_c.2608-163del	yes	unknown	7735	2328	1461	0	6
P-0027722-T01-IM6	SOMATIC	AR	AR	X	X	66935377	66943477	Intron of AR(+):2Kb before exon 5	Intron of AR(+):50bp before exon 8		GRCh37	DELETION	10	64	Deletion of 3 exons : out of frame	PRECISE	3to5	AR (NM_000044) rearrangement: c.2174-1943_c.2608-51del	yes	unknown	8100	2376	270	0	66
P-0061264-T01-IM7	SOMATIC	AR	AR	X	X	66936959	66943403	Intron of AR(+):360bp before exon 5	Intron of AR(+):124bp before exon 8		GRCh37	DELETION	0	5	Deletion of 3 exons : out of frame	IMPPRECISE	3to5	AR (NM_000044) rearrangement: c.2174-361_c.2608-125del	yes	unknown	6444	2412	1272	0	5
P-0037983-T01-IM6	SOMATIC	AR	AR	X	X	66764311	66765277	5-UTR of AR(+):677bp before coding start	Exon 1 of AR(+)		GRCh37	DELETION	0	64	Deletion within transcript : mid-exon	IMPPRECISE	3to5	AR (NM_000044) rearrangement: c.289:AR_chrX:g.66764311del	yes	unknown	966	3006	2609	0	77
P-0059302-T01-IM7	SOMATIC	AR	AR	X	X	66936208	66942714	Intron of AR(+):1Kb before exon 5	Exon 7 of AR(+)		GRCh37	DELETION	10	41	Deletion within transcript : mid-exon	PRECISE	3to5	AR (NM_000044) rearrangement: c.2174-1112_c.2495del	yes	unknown	6506	1420	2103	0	41
P-0059173-T01-IM7	SOMATIC	AR	AR	X	X	66935273	66943538	Intron of AR(+):2Kb before exon 5	Exon 8 of AR(+)		GRCh37	DELETION	10	64	Deletion within transcript : mid-exon	PRECISE	3to5	AR (NM_000044) rearrangement: c.2174-2047_c.2618del	yes	unknown	8265	2783	4223	0	66
P-0047833-T02-IM6	SOMATIC	AR		X	X	66934531	66942786	Intron of AR(+):3Kb before exon 5	Exon 7 of AR(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AR (NM_000044) rearrangement: c.2174-2789_c.2567del			8255	2160	1821	0	48
P-0072084-T02-IM7	SOMATIC	AR		X	X	66931491	66943672	Exon 4 of AR(+)	Exon 8 of AR(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AR (NM_000044) rearrangement: c.2133_c.2752del			12181	2752	3153	0	24
P-0007533-T01-IM5	SOMATIC	AR	OPHN1	X	X	66931362	67175446	Exon 4 of AR(+)	IGR: 87Kb before OPHN1(-)		GRCh37	INVERSION	84	102	OPHN1-AR fusion	PRECISE	3to3	AR (NM_000044) rearrangement : c.2004:AR_chrX:g.67175446inv	yes	unknown	244084	6861	7616	0	113
P-0041955-T01-IM6	SOMATIC	AR	OPHN1	X	X	66931421	67117287	Exon 4 of AR(+)	IGR: 145Kb before OPHN1(-)		GRCh37	DELETION	10	76	OPHN1-AR fusion	PRECISE	3to5	AR (NM_000044) rearrangement: c.2063:AR_chrX:g.67117287del	yes	unknown	185866	4415	6577	0	78
P-0046175-T02-IM6	SOMATIC	AR	CAGE1	X	6	66931498	7324070	Exon 4 of AR(+)	Promoter of CAGE1(-):3Kb from tx start		GRCh37	TRANSLOCATION	10	19	Protein Fusion: mid-exon  {AR:CAGE1}	PRECISE	3to3	AR (NM_000044) rearrangement: t(6;X)(p24.3;q12)(chr6:g.7324070::chrX:g.66931498)	yes	unknown	0	0	0	0	19
P-0029465-T01-IM6	SOMATIC	ARAF		X	2	47424257	141622159	Exon 4 of ARAF(+)	Intron of LRP1B(-):3Kb after exon 27		GRCh37	TRANSLOCATION			ARAF-intragenic	IMPPRECISE	5to3	ARAF (NM_001654) Rearrangment: t(X;2) (Xp11.3;2q22.1-q22.2)(chrX:g.47424257::chr2:g.141622159)			0	0	0	0	21
P-0074811-T01-IM7	SOMATIC	ARAF	ARAF	X	X	47424784	47429077	Intron of ARAF(+):35bp after exon 6	Intron of ARAF(+):21bp after exon 13		GRCh37	DELETION	0	45	Deletion of 7 exons : out of frame	IMPPRECISE	3to5	ARAF (NM_001654) rearrangement: c.557+35_c.1419+21del	yes	unknown	4293	14776	17341	0	49
P-0029465-T01-IM6	SOMATIC	ARAF		X	X	47424746	47426035	Exon 6 of ARAF(+)	Intron of ARAF(+):2bp before exon 7		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARAF (NM_001654) Rearrangement: c.554_c.558-3del			1289	837	778	0	25
P-0065831-T01-IM7	SOMATIC	ARFGAP1	RTEL1	20	20	61914490	62326464	Intron of ARFGAP1(+):287bp after exon 9	Exon 33 of RTEL1(+)		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {ARFGAP1:RTEL1}	PRECISE	3to5	ARFGAP1 (NM_175609) - RTEL1 (NM_032957) rearrangement: c.717+287:ARFGAP1_c.3461:RTEL1del	yes	unknown	411974	46255	63354	0	21
P-0084999-T01-IM7	SOMATIC	ARHGAP35		19	17	47423707	39904635	Exon 1 of ARHGAP35(+)	IGR: 6Kb before JUP(-)		GRCh37	TRANSLOCATION			ARHGAP35-intragenic	PRECISE	3to5	ARHGAP35 (NM_004491) rearrangement: t(17;19)(p21.2;q13.32)(chr17:g.39904635::chr19:g47423707)			0	0	0	0	20
P-0087687-T01-IM7	SOMATIC	ARHGAP35		19	19	47417472	47440357	IGR: 4Kb before ARHGAP35(+)	Intron of ARHGAP35(+):163bp before exon 2		GRCh37	DELETION			ARHGAP35-intragenic	PRECISE	3to5	ARHGAP35 (NM_004491) rearrangement: c.-188-4273_c.3682-164del			22885	17067	7893	0	17
P-0068040-T01-IM7	SOMATIC	ARHGAP35	ARHGAP35	19	19	47425126	47426494	Exon 1 of ARHGAP35(+)	Intron of ARHGAP35(+):881bp after exon 1		GRCh37	DELETION	10	55	Deletion within transcript : mid-exon	PRECISE	3to5	ARHGAP35 (NM_004491) rearrangement: c.3194_c.3681+881del	yes	unknown	1368	4013	2965	0	58
P-0086197-T01-IM7	SOMATIC	ARHGAP35		19	19	47423832	47492641	Exon 1 of ARHGAP35(+)	Intron of ARHGAP35(+):159bp before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARHGAP35(NM_004491) rearrangement: c.1900_c.3905-160del			68809	10186	13004	0	25
P-0018669-T01-IM6	SOMATIC	ARHGAP40	TOP1	20	20	37253954	39709668	Intron of ARHGAP40(+):2Kb before exon 3	Intron of TOP1(+):136bp before exon 7		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {ARHGAP40:TOP1}	PRECISE	3to5	ARHGAP40 (NM_001164431) - TOP1 (NM_003286) rearrangement: c.338-1687:ARHGAP40_c.432-137:TOP1del	yes	unknown	2455714	5723	13344	0	12
P-0038319-T01-IM6	SOMATIC	ARHGEF17	WHSC1L1	11	8	73034925	38187156	Intron of ARHGEF17(+):12Kb after exon 1	Exon 6 of WHSC1L1(-)		GRCh37	TRANSLOCATION	10	273	Protein Fusion: mid-exon  {ARHGEF17:WHSC1L1}	PRECISE	3to3	ARHGEF17 (NM_014786) - WHSC1L1 (NM_023034) rearrangement: t(8;11)(p11.23;q13.4)(chr8:g.38187156::chr11:g.73034925)	yes	unknown	0	0	0	0	268
P-0048992-T01-IM6	SOMATIC	ARHGEF38	TET2	4	4	106197244	106529897	Exon 11 of TET2(+)	Intron of ARHGEF38(+):5Kb before exon 3		GRCh37	DUPLICATION	10	13	Protein Fusion: mid-exon  {ARHGEF38:TET2}	PRECISE	5to3	ARHGEF38 (NM_001242729) - TET2 (NM_001127208) rearrangement: c.385-4644:ARHGEF38_c.5577:TET2dup	yes	unknown	332653	1805	2475	0	13
P-0005821-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27082230	27101580	Intron of ARID1A(+): 5Kb before exon 5	Exon 18 of ARID1A(+)		GRCh37	INVERSION	59	54	Antisense fusion	PRECISE	3to3	ARID1A (NM_006015) rearrangement event : c.1921-5117_4862inv	yes	unknown	19350	27612	29380	0	52
P-0039523-T02-IM6	SOMATIC	ARID1A	ARID1A	18	1	40077260	27101004	5-UTR of LINC00907(+):194Kb before coding start	Exon 18 of ARID1A(+)		GRCh37	TRANSLOCATION	0	123	Antisense Fusion	IMPPRECISE	3to3	ARID1A (NM_006015) rearrangement: t(1;18)(p36.11;q12.3)(chr1:g.27101004::chr18:g.40077260)	yes	unknown	0	0	0	0	122
P-0051435-T01-IM6	SOMATIC	ARID1A	BCAR3	1	1	27101241	94131651	Exon 18 of ARID1A(+)	Intron of BCAR3(-):9Kb after exon 2		GRCh37	DELETION	9	5	Antisense Fusion	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.4523:ARID1A_chr1:g.94131651del	yes	unknown	67030410	308683	423350	0	5
P-0073864-T01-IM7	SOMATIC	ARID1A	ARID1A	8	1	51396695	27089635	Intron of SNTG1(+):19Kb before exon 9	Exon 8 of ARID1A(+)		GRCh37	TRANSLOCATION	10	47	Antisense Fusion	PRECISE	3to3	ARID1A (NM_006015) rearrangement: t(1;8)(p36.11;q11.21)(chr1:g.27089635::chr8:g.51396695)	yes	unknown	0	0	0	0	55
P-0078897-T01-IM7	SOMATIC	ARID1A	WASF2	1	1	27100155	27739237	Exon 16 of ARID1A(+)	Intron of WASF2(-):16bp before exon 7		GRCh37	DELETION	7	5	Antisense Fusion	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.3951:ARID1A_chr1:g.27739237del	yes	unknown	639082	24772	25360	0	5
P-0052721-T01-IM6	SOMATIC	ARID1A		1	1	27065062	27100359	Intron of ARID1A(+):6Kb after exon 4	Exon 17 of ARID1A(+)		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	ARID1A (NM_006015) rearrangement: c.1920+5779_c.4071inv			35297	31360	28617	0	34
P-0083892-T02-IM7	SOMATIC	ARID1A		1	1	27059407	27239025	Intron of ARID1A(+):124bp after exon 4	Intron of NR0B2(-):448bp before exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.1920+124:ARID1A_chr1:g.27239025del			179618	33615	31271	0	27
P-0038157-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	26773808	27023761	Intron of DHDDS(+):241bp before exon 6	Exon 1 of ARID1A(+)		GRCh37	INVERSION	10	34	ARID1A-intragenic	PRECISE	5to5	ARID1A (NM_006015) rearrangement: c.867:ARID1A_chr1:g.26773808inv	yes	unknown	249953	3167	3046	0	54
P-0054253-T01-IM6	SOMATIC	ARID1A	ARID1A	4	1	186963188	27107244	IGR: 27Kb before TLR3(+)	Exon 20 of ARID1A(+)		GRCh37	TRANSLOCATION	10	9	ARID1A-intragenic	PRECISE	5to3	ARID1A (NM_006015) rearrangement: t(1;4)(p36.11;q35.1)(chr1:g.27107244::chr4:g.186963188)	yes	unknown	0	0	0	0	9
P-0039982-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	26831005	27106439	IGR: 25Kb before RPS6KA1(+)	Exon 20 of ARID1A(+)		GRCh37	DELETION	10	22	ARID1A-intragenic	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.6050:ARID1A_chr1:g.26831005del	yes	unknown	275434	44034	41972	0	24
P-0061666-T03-IM7	SOMATIC	ARID1A	ARID1A	1	1	27055163	27097755	Intron of ARID1A(+):978bp before exon 2	Exon 12 of ARID1A(+)		GRCh37	INVERSION	0	6	ARID1A-intragenic	IMPPRECISE	5to5	ARID1A (NM_006015) rearrangement: c.1138-979_c.3344inv	yes	unknown	42592	22688	36504	0	6
P-0074053-T02-IM7	SOMATIC	ARID1A	PIGV	1	1	27099986	27126579	Exon 15 of ARID1A(+)	Promoter of PIGV(+):12Kb from tx start		GRCh37	INVERSION	10	14	ARID1A-intragenic	PRECISE	5to5	ARID1A (NM_006015) rearrangement: c.3865:ARID1A_chr1:g.27126579inv	yes	unknown	26593	21030	16130	0	14
P-0075919-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	26816042	27106772	IGR: 17Kb before HMGN2(+)	Exon 20 of ARID1A(+)		GRCh37	DELETION	10	112	ARID1A-intragenic	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.6383:ARID1A_chr1:g.26816042del	yes	unknown	290730	41574	21000	0	114
P-0081578-T01-IM7	SOMATIC	ARID1A		1	1	23963023	27106987	5-UTR of MDS2(+):4Kb before coding start	Exon 20 of ARID1A(+)		GRCh37	INVERSION			ARID1A-intragenic	PRECISE	5to5	ARID1A (NM_006015) rearrangement: c.6598:ARID1A_chr1:g.23963023inv			3143964	59562	84456	0	30
P-0004912-T01-IM5	SOMATIC	ARID1A		1	1	27101204	27552578	Exon 18 of ARID1A(+)	IGR: 8Kb before WDTC1(+)		GRCh37	INVERSION			ARID1A-intragenic	PRECISE	5to5	ARID1A(NM_006015) Rearrangement : c.4486:ARID1A_chr1:g.27552578inv			451374	17285	13587	0	27
P-0010171-T01-IM5	SOMATIC	ARID1A		2	1	210926778	27059158	Intron of C2orf67(-): 13Kb after exon 6	Intron of ARID1A(+): 9bp before exon 4		GRCh37	TRANSLOCATION			ARID1A-intragenic	PRECISE	3to5	ARID1A (NM_006015) rearrangement: t(1;2)(p36.11;q34)(chr1:g.27059158::chr2:g.210926778)			0	0	0	0	24
P-0019731-T01-IM6	SOMATIC	ARID1A		1	1	27105726	120250048	Exon 20 of ARID1A(+)	IGR: 4Kb before PHGDH(+)		GRCh37	INVERSION			ARID1A-intragenic	PRECISE	3to3	ARID1A (NM_006015) rearrangement : c.5337:ARID1A_g.120250048inv			93144322	407016	515714	0	17
P-0028516-T01-IM6	SOMATIC	ARID1A		19	1	12639615	27094395	Intron of ZNF564(-):105bp before exon 2	Exon 11 of ARID1A(+)		GRCh37	TRANSLOCATION			ARID1A-intragenic	PRECISE	3to5	ARID1A (NM_006015) rearrangement: t(1;19)(p36.12;p13.2)(chr1:g.27094395::chr19:g.12639615)			0	0	0	0	21
P-0036332-T01-IM6	SOMATIC	ARID1A		1	1	6963053	27087305	Intron of CAMTA1(+):78Kb after exon 3	Intron of ARID1A(+):41bp before exon 5		GRCh37	INVERSION			ARID1A-intragenic	IMPPRECISE	5to5	ARID1A (NM_006015) Rearrangement : c.1921-42:ARID1A_c.234+77783:CAMTA1inv			20124252	284323	325015	0	6
P-0045550-T01-IM6	SOMATIC	ARID1A		1	1	27106058	27387351	Exon 20 of ARID1A(+)	IGR: 38Kb before SLC9A1(-)		GRCh37	DELETION			ARID1A-intragenic	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.5669:ARID1A_chr1:g.27387351del			281293	6535	9312	0	23
P-0074559-T02-IM7	SOMATIC	ARID1A	ARID1A	1	1	27097332	27099481	Intron of ARID1A(+):277bp before exon 12	Intron of ARID1A(+):3bp after exon 14		GRCh37	DELETION	10	10	Deletion of 3 exons : out of frame	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.3199-278_c.3715+3del	yes	unknown	2149	4245	4981	0	10
P-0071268-T01-IM7	SOMATIC	ARID1A		1	1	27099628	27103052	Intron of ARID1A(+):150bp after exon 14	Intron of ARID1A(+):854bp after exon 19		GRCh37	DELETION			Deletion of 5 exons : out of frame	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.3715+150_c.5124+854del			3424	8364	10120	0	5
P-0021390-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27086254	27087375	Intron of ARID1A(+):1Kb before exon 5	Exon 5 of ARID1A(+)		GRCh37	DELETION	10	129	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.1921-1093_c.1949del	yes	unknown	1121	471	362	0	151
P-0016696-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27027986	27100876	Intron of ARID1A(+):4Kb after exon 1	Exon 18 of ARID1A(+)		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.1137+3955_c.4158del	yes	unknown	72890	26003	48533	0	6
P-0057557-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27088666	27093963	Exon 7 of ARID1A(+)	Intron of ARID1A(+):317bp before exon 11		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.2275_c.2989-318del	yes	unknown	5297	8300	8018	0	4
P-0067975-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27089481	27090760	Exon 8 of ARID1A(+)	Intron of ARID1A(+):984bp after exon 8		GRCh37	DELETION	10	53	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.2437_c.2732+984del	yes	unknown	1279	2754	1823	0	54
P-0070513-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27101251	27102795	Exon 18 of ARID1A(+)	Intron of ARID1A(+):597bp after exon 19		GRCh37	DELETION	10	36	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.4533_c.5124+597del	yes	unknown	1544	3840	4780	0	46
P-0076964-T02-IM7	SOMATIC	ARID1A	ARID1A	1	1	27106151	27108855	Exon 20 of ARID1A(+)	Promoter of ARID1A(+):86Kb from tx start		GRCh37	DELETION	10	52	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.5762:ARID1A_chr1:g.27108855del	yes	unknown	2704	5655	10610	0	54
P-0021573-T01-IM6	SOMATIC	ARID1A		1	1	27021676	27023822	Promoter of ARID1A(+):845bp from tx start	Exon 1 of ARID1A(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: g.27021676_c.928del			2146	4382	4920	0	5
P-0031529-T01-IM6	SOMATIC	ARID1A		1	1	27023447	27046754	Exon 1 of ARID1A(+)	Intron of ARID1A(+):9Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.553_c.1138-9388del			23307	1548	1583	0	33
P-0074775-T01-IM7	SOMATIC	ARID1A		1	1	27099910	27101353	Exon 15 of ARID1A(+)	Exon 18 of ARID1A(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.3789_c.4635del			1443	7150	6662	0	57
P-0084458-T01-IM7	SOMATIC	ARID1A		1	1	27074855	27106963	Intron of ARID1A(+):12Kb before exon 5	Exon 20 of ARID1A(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.1921-12492_c.6574del			32108	42792	38649	0	20
P-0019346-T01-IM6	SOMATIC	ARID1A		1	1	27044972	27101570	Intron of ARID1A(+):11Kb before exon 2	Exon 18 of ARID1A(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.1138-11170_c.4852del			56598	35920	33747	0	4
P-0001664-T01-IM3	SOMATIC	ARID1A	ARID1A	1	1	27100821	27103139	Exon 18 of ARID1A(+)	Intron of ARID1A(+): 941bp after exon 19		GRCh37	DELETION	61	43	Deletion within transcript: mid-exon	PRECISE	3to5	ARID1A (NM_006015) intragenic deletion: c.4103_c.5124+941del	yes	unknown	2318	11326	6640	0	51
P-0008715-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27095896	27106281	Intron of ARID1A(+): 1Kb after exon 11	Exon 20 of ARID1A(+)		GRCh37	DELETION	56	80	Deletion within transcript: mid-exon	PRECISE	3to5	ARID1A (NM_006015) rearrangement: c.3198+1406_c.5892del	yes	unknown	10385	24009	13705	0	75
P-0047156-T01-IM6	SOMATIC	ARID1A		1	1	27063963	27100051	Intron of ARID1A(+):5Kb after exon 4	Intron of ARID1A(+):19bp before exon 16		GRCh37	DUPLICATION			Duplication of 11 exons : out of frame	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1920+4680_c.3867-20dup			36088	16854	24741	0	45
P-0004108-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27064968	27099990	Intron of ARID1A(+): 6Kb after exon 4	Intron of ARID1A(+): 3bp after exon 15		GRCh37	DUPLICATION	19	8	Duplication of 11 exons: out of frame	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1920+5685_c.3866+3dup	yes	unknown	35022	16517	15865	0	9
P-0026930-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27057611	27099992	Intron of ARID1A(+):31bp before exon 3	Intron of ARID1A(+):5bp after exon 15		GRCh37	DUPLICATION	10	49	Duplication of 13 exons : out of frame	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1351-32_c.3866+5dup	yes	unknown	42381	23231	25525	0	51
P-0065219-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27089941	27093110	Intron of ARID1A(+):165bp after exon 8	Intron of ARID1A(+):53bp after exon 10		GRCh37	DUPLICATION	10	20	Duplication of 2 exons : out of frame	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.2732+165_c.2988+53dup	yes	unknown	3169	1965	3275	0	20
P-0003870-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27052746	27088815	Intron of ARID1A(+): 3Kb before exon 2	Intron of ARID1A(+): 5bp after exon 7		GRCh37	DUPLICATION	65	74	Duplication of 6 exons: out of frame	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1138-3396_c.2419+5:ARID1Adup	yes	unknown	36069	16510	21777	0	69
P-0026273-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27055259	27102196	Intron of ARID1A(+):882bp before exon 2	Exon 19 of ARID1A(+)		GRCh37	DUPLICATION	0	8	Duplication within transcript : mid-exon	IMPPRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1138-883_c.5122dup	yes	unknown	46937	35785	19991	0	8
P-0009402-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27029058	27106373	Intron of ARID1A(+):5Kb after exon 1	Exon 20 of ARID1A(+)		GRCh37	DUPLICATION	10	43	Duplication within transcript : mid-exon	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.1137+5027_c.5984dup	yes	unknown	77315	39147	51547	0	43
P-0019022-T02-IM6	SOMATIC	ARID1A		1	1	27089483	27099760	Exon 8 of ARID1A(+)	Intron of ARID1A(+):76bp before exon 15		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	ARID1A (NM_006015) rearrangement: c.2439_c.3716-77dup			10277	14025	19876	0	66
P-0034685-T01-IM6	SOMATIC	ARID1A		1	1	27090894	27099347	Intron of ARID1A(+):1Kb after exon 8	Exon 14 of ARID1A(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	ARID1A (NM_006015) Rearrangement : c.2732+1118_c.3584dup			8453	7307	10666	0	33
P-0016809-T02-IM6	SOMATIC	ARID1A	NUDC	1	1	27094264	27264975	Intron of ARID1A(+):16bp before exon 11	Intron of NUDC(+):3Kb before exon 3		GRCh37	DUPLICATION	7	5	Protein Fusion: in frame  {NUDC:ARID1A}	PRECISE	5to3	NUDC (NM_006600) - ARID1A (NM_006015) rearrangement: c.160-2973:NUDC_c.2989-17:ARID1Adup	yes	unknown	170711	24538	13276	0	5
P-0037105-T04-IM6	SOMATIC	ARID1A	ZDHHC18	1	1	27101056	27157879	Exon 18 of ARID1A(+)	Intron of ZDHHC18(+):1Kb before exon 2		GRCh37	DELETION	10	53	Protein Fusion: mid-exon  {ARID1A:ZDHHC18}	PRECISE	3to5	ARID1A (NM_006015) - ZDHHC18 (NM_032283) rearrangement: c.4338:ARID1A_c.336-1059:ZDHHC18del	yes	unknown	56823	19458	24163	0	54
P-0001717-T01-IM3	SOMATIC	ARID1A	EPB41	1	1	27100957	29241332	Exon 18 of ARID1A(+)	5-UTR of EPB41(+): 73Kb before coding start		GRCh37	DUPLICATION	36	14	Protein fusion: mid-exon (EPB41-ARID1A)	PRECISE	5to3	EPB41 (NM_001166005) - ARID1A (NM_006015) duplication:   c.-8+27610_c.4239del	yes	unknown	2140375	28743	47567	0	14
P-0011395-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157527465	157544399	Exon 20 of ARID1B(+)	IGR: 12Kb after ARID1B(+)		GRCh37	DELETION	16	15	ARID1B-intragenic	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.5016_chr6:g.157544399del	yes	unknown	16934	11795	11900	0	15
P-0007032-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157482865	157502198	Intron of ARID1B(+): 5Kb before exon 10	Exon 12 of ARID1B(+)		GRCh37	INVERSION	30	24	ARID1B-intragenic	PRECISE	5to5	ARID1B (NM_020732) rearrangement : c.2706-5309_3057inv	yes	unknown	19333	9528	10850	0	23
P-0064194-T01-IM7	SOMATIC	ARID1B	LINC01411	6	5	157528758	173837335	Exon 20 of ARID1B(+)	5-UTR of LINC01411(+):117Kb before coding start		GRCh37	TRANSLOCATION	10	75	ARID1B-intragenic	PRECISE	5to5	ARID1B (NM_020732) rearrangement: t(5;6)(q35.2;q25.3)(chr5:g.173837335::chr6:g.157528758)	yes	unknown	0	0	0	0	94
P-0044362-T05-IM7	SOMATIC	ARID1B	ARID1B	6	6	157528279	157531052	Exon 20 of ARID1B(+)	3-UTR of ARID1B(+):432Kb after coding stop		GRCh37	DELETION	10	8	ARID1B-intragenic	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.6004:ARID1B_chr6:g.157531052del	yes	unknown	2773	3777	5857	0	8
P-0016117-T01-IM6	SOMATIC	ARID1B		6	6	157099746	170354686	Exon 1 of ARID1B(+)	IGR: 121Kb before LOC102724511(+)		GRCh37	DUPLICATION			ARID1B-intragenic	PRECISE	5to3	ARID1B (NM_020732) rearrangement: c.683_chr6:g.170354686dup			13254940	66813	78071	0	38
P-0021102-T01-IM6	SOMATIC	ARID1B		8	6	27481234	157528010	IGR: 10Kb before SCARA3(+)	Exon 20 of ARID1B(+)		GRCh37	TRANSLOCATION			ARID1B-intragenic	PRECISE	3to3	ARID1B (NM_020732) rearrangement: t(6;8)(q25.3;p21.1)(chr6:g.157528010::chr8:g.27481234)			0	0	0	0	11
P-0027995-T01-IM6	SOMATIC	ARID1B		6	6	157496077	157787825	Intron of ARID1B(+):826bp after exon 11	IGR: 15Kb before ZDHHC14(+)		GRCh37	DELETION			ARID1B-intragenic	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.2961+826:ARID1B_chr6:g.157787825del			291748	26481	25504	0	17
P-0029023-T01-IM6	SOMATIC	ARID1B		6	6	67007800	157510816	IGR: 510Kb before SLC25A51P1(+)	Exon 14 of ARID1B(+)		GRCh37	DELETION			ARID1B-intragenic	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.3591_chr6:g.67007800del			90503016	395628	681507	0	93
P-0031202-T01-IM6	SOMATIC	ARID1B		10	6	73062411	157505664	3-UTR of UNC5B(+):90Kb after coding stop	Intron of ARID1B(+):95bp after exon 13		GRCh37	TRANSLOCATION			ARID1B-intragenic	PRECISE	5to3	ARID1B (NM_020732) rearrangement: t(6;10)(q25.3;q22.1)(chr6:g.157505664::chr10:g.73062411)			0	0	0	0	9
P-0043591-T01-IM6	SOMATIC	ARID1B		6	6	119442122	157495228	5-UTR of FAM184A(-):161Kb before coding start	Exon 11 of ARID1B(+)		GRCh37	DELETION			ARID1B-intragenic	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.3112:ARID1B_chr6:g.119442122del			38053106	123141	201443	0	28
P-0042931-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157470094	157494807	Intron of ARID1B(+):9bp after exon 9	Intron of ARID1B(+):334bp before exon 11		GRCh37	DELETION	10	40	Deletion of 1 exon : out of frame	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.2879+9_c.3026-335del	yes	unknown	24713	2026	669	0	41
P-0067550-T01-IM7	SOMATIC	ARID1B		6	6	157255604	157521697	Intron of ARID1B(+):995bp before exon 5	Intron of ARID1B(+):141bp before exon 18		GRCh37	DELETION			Deletion of 13 exons : in frame	IMPPRECISE	3to5	ARID1B (NM_020732) rearrangement: c.1927-996_c.4111-142del			266093	23660	19924	0	7
P-0065201-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157099147	157102641	Exon 1 of ARID1B(+)	Intron of ARID1B(+):2Kb after exon 1		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.84_c.1542+2036del	yes	unknown	3494	7873	9085	0	13
P-0067853-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157449974	157469780	Intron of ARID1B(+):4Kb before exon 8	Exon 9 of ARID1B(+)		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.2372-4188_c.2574del	yes	unknown	19806	2010	763	0	7
P-0077228-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157119224	157488292	Intron of ARID1B(+):19Kb after exon 1	Exon 10 of ARID1B(+)		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.1542+18619_c.2998del	yes	unknown	369068	16964	18169	0	21
P-0009740-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157222659	157223463	Exon 4 of ARID1B(+)	Intron of ARID1B(+): 804bp after exon 4		GRCh37	DELETION	73	64	Deletion within transcript: mid-exon	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.1926_c.1926+804del	yes	unknown	804	78	57	0	63
P-0015039-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157384247	157405941	Intron of ARID1B(+): 22Kb before exon 6	Exon 6 of ARID1B(+)		GRCh37	DELETION	7	7	Deletion within transcript: mid-exon	PRECISE	3to5	ARID1B (NM_020732) rearrangement: c.2038-21549_c.2183del	yes	unknown	21694	1407	1124	0	7
P-0075298-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157464116	157470175	Intron of ARID1B(+):6Kb before exon 9	Intron of ARID1B(+):90bp after exon 9		GRCh37	DUPLICATION	0	10	Duplication of 1 exon : out of frame	IMPPRECISE	5to3	ARID1B (NM_020732) rearrangement: c.2552-5642_c.2879+90dup	yes	unknown	6059	2449	4190	0	11
P-0015204-T01-IM6	SOMATIC	ARID1B		6	6	157508630	157522644	Intron of ARID1B(+): 2Kb before exon 14	Intron of ARID1B(+): 22bp after exon 18		GRCh37	DUPLICATION			Duplication of 5 exons: in frame	PRECISE	5to3	ARID1B (NM_020732) rearrangement: c.3377-2146_c.4720+22			14014	11653	12854	0	54
P-0042744-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157469910	157516680	Exon 9 of ARID1B(+)	Intron of ARID1B(+):618bp before exon 16		GRCh37	DUPLICATION	10	53	Duplication within transcript : mid-exon	PRECISE	5to3	ARID1B (NM_020732) rearrangement: c.2704_c.3863-619dup	yes	unknown	46770	11225	14528	0	57
P-0075658-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157496088	157517302	Intron of ARID1B(+):837bp after exon 11	Exon 16 of ARID1B(+)		GRCh37	DUPLICATION	10	35	Duplication within transcript : mid-exon	PRECISE	5to3	ARID1B (NM_020732) rearrangement: c.3135+837_c.3866dup	yes	unknown	21214	7153	12844	0	35
P-0031689-T01-IM6	SOMATIC	ARID1B	MAP3K5	6	6	136993404	157527554	Intron of MAP3K5(-):3Kb before exon 8	Exon 20 of ARID1B(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {ARID1B:MAP3K5}	PRECISE	3to3	ARID1B (NM_020732) - MAP3K5 (NM_005923) rearrangement: c.5279:ARID1B_c.1254-2871:MAP3K5inv			20534150	107263	165562	0	66
P-0036854-T01-IM6	SOMATIC	ARID1B	SLC22A2	6	6	157505503	160651538	Exon 13 of ARID1B(+)	Intron of SLC22A2(-):6Kb before exon 10		GRCh37	INVERSION	10	61	Protein Fusion: mid-exon  {ARID1B:SLC22A2}	PRECISE	3to3	ARID1B (NM_020732) -  SLC22A2 (NM_003058) rearrangement: c.3310:ARID1B_c.1502-570:SLC22A2inv	yes	unknown	3146035	23621	29972	0	62
P-0043660-T01-IM6	SOMATIC	ARID1B	CDKN2A	9	6	21968863	157398404	Intron of CDKN2A(-):622bp before exon 3	Intron of ARID1B(+):7Kb before exon 6		GRCh37	TRANSLOCATION	10	14	Protein Fusion: out of frame  {ARID1B:CDKN2A}	PRECISE	3to3	ARID1B (NM_020732) - CDKN2A (NM_000077) rearrangement: t(6;9)(q25.3;p21.3)(chr6:g.157398404::chr9:g.21968863)	yes	unknown	0	0	0	0	14
P-0056417-T03-IM7	SOMATIC	ARID2	PCBP2	12	12	46231650	53855191	Intron of ARID2(+):160bp after exon 10	Intron of PCBP2(+):264bp after exon 7		GRCh37	INVERSION	8	6	Antisense Fusion	PRECISE	3to3	ARID2 (NM_152641) rearrangement: c.1330+160:ARID2_chr12:g.53855191inv	yes	unknown	7623541	260688	449682	0	6
P-0073299-T01-IM7	SOMATIC	ARID2	PPM1H	12	12	46244695	63273959	Exon 15 of ARID2(+)	Intron of PPM1H(-):48Kb before exon 2		GRCh37	DELETION	10	17	Antisense Fusion	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.2789:ARID2_chr12:g.63273959del	yes	unknown	17029264	321208	490011	0	16
P-0016499-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46215187	46215775	Intron of ARID2(+):15bp before exon 6	Intron of ARID2(+):505bp after exon 6		GRCh37	INVERSION	10	9	ARID2-intragenic	PRECISE	5to5	ARID2 (NM_152641) rearrangement: c.638-16_c.705+505inv	yes	unknown	588	529	1074	0	9
P-0074690-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46242885	46243943	Intron of ARID2(+):132bp after exon 13	Exon 15 of ARID2(+)		GRCh37	INVERSION	10	92	ARID2-intragenic	PRECISE	5to5	ARID2 (NM_152641) rearrangement: c.1715+132_c.2037inv	yes	unknown	1058	2958	2081	0	119
P-0065971-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46124892	46134836	Intron of ARID2(+):107bp before exon 3	Intron of ARID2(+):10Kb after exon 3		GRCh37	INVERSION	10	7	ARID2-intragenic	PRECISE	5to5	ARID2 (NM_152641) rearrangement: c.187-108_c.284+9739inv	yes	unknown	9944	918	1782	0	7
P-0009346-T01-IM5	SOMATIC	ARID2		20	12	38766766	46230848	IGR: 548Kb before MAFB(-)	Intron of ARID2(+): 74bp after exon 8		GRCh37	TRANSLOCATION			ARID2-intragenic	IMPRECISE	5to3	ARID2 (NM_152641) rearrangement : t(12;20)(q12;q12)(chr12:g.46230848::chr20:g.38766766)			0	0	0	0	13
P-0009590-T01-IM5	SOMATIC	ARID2		12	12	46244087	69098856	Exon 15 of ARID2(+)	Intron of NUP107(+): 2Kb after exon 8		GRCh37	INVERSION			ARID2-intragenic	PRECISE	5to5	ARID2 (NM_152641) rearrangement: c.2181_chr12:g.69098856inv			22854769	390723	414132	0	23
P-0022197-T01-IM6	SOMATIC	ARID2		12	12	46246771	68840062	Intron of ARID2(+):92bp after exon 15	3-UTR of LOC100507195(-):5Kb after coding stop		GRCh37	INVERSION			ARID2-intragenic	PRECISE	3to3	ARID2 (NM_152641) rearrangement: c.4773+92_chr12:g.68840062inv			22593291	325443	307708	0	17
P-0024858-T01-IM6	SOMATIC	ARID2		Y	12	28562161	46297969	IGR: 688Kb before TTTY3B(+)	Intron of ARID2(+):747bp before exon 21		GRCh37	TRANSLOCATION			ARID2-intragenic	PRECISE	5to5	ARID2 (NM_152641) rearrangement: t(12;23)(q13.11;q11.23)(chr12:g.46297969::chrY:g.28562161)			0	0	0	0	11
P-0014859-T01-IM6	SOMATIC	ARID2		12	12	46208593	46215134	Intron of ARID2(+): 3Kb before exon 5	Intron of ARID2(+): 69bp before exon 6		GRCh37	DELETION			Deletion of 1 exon: in frame	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.419-2860_c.638-69del			6541	2086	2113	0	17
P-0023713-T01-IM6	SOMATIC	ARID2		12	12	46262772	46287166	Intron of ARID2(+):8Kb after exon 16	Intron of ARID2(+):36bp before exon 19		GRCh37	DELETION			Deletion of 2 exons : in frame	IMPPRECISE	3to5	ARID2 (NM_152641) rearrangement: c.4922+8040_c.5148-37del			24394	2315	1821	0	14
P-0001635-T01-IM3	SOMATIC	ARID2	ARID2	12	12	46123743	46142178	Intron of ARID2(+): 32bp after exon 1	Intron of ARID2(+): 17Kb after exon 3		GRCh37	DELETION	73	44	Deletion of 2 exons: in frame	PRECISE	3to5	None	yes	unknown	18435	3678	4338	0	49
P-0021725-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46212590	46231268	Intron of ARID2(+):919bp after exon 5	Intron of ARID2(+):12bp before exon 10		GRCh37	DELETION	10	42	Deletion of 4 exons : in frame	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.637+919_c.1121-13del	yes	unknown	18678	7378	4448	0	45
P-0024598-T01-IM6	SOMATIC	ARID2		12	12	46215308	46241613	Intron of ARID2(+):38bp after exon 6	Intron of ARID2(+):893bp after exon 12		GRCh37	DELETION			Deletion of 6 exons : out of frame	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.705+38_c.1580+893del			26305	7603	3229	0	6
P-0057427-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46122759	46123791	Promoter of ARID2(+):860bp from tx start	Intron of ARID2(+):35bp before exon 2		GRCh37	DELETION	0	88	Deletion within transcript	IMPPRECISE	3to5	ARID2 (NM_152641) rearrangement: c.93-36:ARID2_chr12:g.46122759del	yes	unknown	1032	713	1030	0	89
P-0045256-T01-IM6	SOMATIC	ARID2		12	12	46298250	46304714	Intron of ARID2(+):466bp before exon 21	Promoter of ARID2(+):181Kb from tx start		GRCh37	DELETION			Deletion within transcript	IMPPRECISE	3to5	ARID2 (NM_152641) rearrangement: c.5364-467:ARID2_chr12:g.46304714del			6464	1015	1010	0	5
P-0073981-T01-IM7	SOMATIC	ARID2		12	12	46287589	46302505	Intron of ARID2(+):85bp after exon 20	Promoter of ARID2(+):179Kb from tx start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.5363+85:ARID2_chr12:g.46302505del			14916	1653	1881	0	10
P-0073981-T01-IM7	SOMATIC	ARID2		12	12	46137658	46245982	Intron of ARID2(+):13Kb after exon 3	Exon 15 of ARID2(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID2 (NM_152641) rearrangement: c.284+12561_c.4076del			108324	22205	25291	0	13
P-0004841-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46125053	46126136	Exon 3 of ARID2(+)	Intron of ARID2(+): 1Kb after exon 3		GRCh37	DELETION	9	6	Deletion within transcript: mid-exon	PRECISE	3to5	ARID2(NM_152641) Rearrangement :  c.240_284+1039del	yes	unknown	1083	240	161	0	6
P-0075570-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46194904	46298223	Intron of ARID2(+):10Kb before exon 4	Intron of ARID2(+):493bp before exon 21		GRCh37	DUPLICATION	0	5	Duplication of 17 exons : in frame	IMPPRECISE	5to3	ARID2 (NM_152641) rearrangement: c.285-10297_c.5364-494dup	yes	unknown	103319	31986	31315	0	5
P-0002336-T01-IM3	SOMATIC	ARID2	ARID2	12	12	46231211	46233681	Intron of ARID2(+): 11bp after exon 9	Intron of ARID2(+): 402bp after exon 11		GRCh37	DUPLICATION	37	16	Duplication of 2 exons: in frame	PRECISE	5to3	ARID2 (NM_152641) Duplication : c.1120+11_c.1498+402dup	yes	unknown	2470	3609	4518	0	20
P-0076134-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46237079	46243917	Intron of ARID2(+):4Kb before exon 12	Exon 15 of ARID2(+)		GRCh37	DUPLICATION	10	50	Duplication within transcript : mid-exon	PRECISE	5to3	ARID2 (NM_152641) rearrangement: c.1499-3560_c.2011dup	yes	unknown	6838	3594	5180	0	51
P-0005712-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46246620	46258225	Exon 15 of ARID2(+)	Intron of ARID2(+): 3Kb after exon 16		GRCh37	DUPLICATION	25	15	Duplication within transcript: mid-exon	PRECISE	5to3	ARID2 (NM_152641) rearrangement: c.4714_c.4922+3493dup	yes	unknown	11605	2006	2484	0	15
P-0083784-T03-IM7	SOMATIC	ARID2		19	12	47846967	46287451	Promoter of C5AR2(+):12Kb from tx start	Exon 20 of ARID2(+)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {C5AR2:ARID2}	PRECISE	3to5	ARID2 (NM_152641) rearrangement: t(12;19)(q12;q13.32)(chr12:g.46287451::chr19:g.47846967)			0	0	0	0	48
P-0066035-T01-IM7	SOMATIC	ARID2	CROCCP2	12	1	46230746	16957922	Exon 8 of ARID2(+)	Promoter of CROCCP2(-):13Kb from tx start		GRCh37	TRANSLOCATION	10	31	Protein Fusion: mid-exon  {CROCCP2:ARID2}	PRECISE	5to5	ARID2 (NM_152641) rearrangement: t(1;12)(p36.13;q12)(chr1:g.16957922::chr12:g.46230746)	yes	unknown	0	0	0	0	42
P-0028470-T01-IM6	SOMATIC	ARID2	MON2	12	12	46123990	62883515	Intron of ARID2(+):70bp after exon 2	Intron of MON2(+):4Kb before exon 3		GRCh37	DELETION	10	13	Protein Fusion: out of frame  {ARID2:MON2}	PRECISE	3to5	ARID2 (NM_152641) - MON2 (NM_015026) rearrangement: c.186+70:ARID2_c.176-4180del	yes	unknown	16759525	265021	266193	0	14
P-0062340-T01-IM7	SOMATIC	ARID4B	FH	1	1	235371839	241665896	Intron of ARID4B(-):11Kb after exon 16	Intron of FH(-):26bp before exon 8		GRCh37	DUPLICATION	10	4	Protein Fusion: out of frame  {ARID4B:FH}	PRECISE	5to3	ARID4B (NM_016374) - FH (NM_000143) rearrangement: c.1841+5245:ARID4B_c.1109-26:FHdup	yes	unknown	6294057	18735	16565	0	5
P-0016714-T01-IM6	SOMATIC	ARID5B		10	10	63815640	63852547	Intron of ARID5B(+):1Kb before exon 6	Exon 10 of ARID5B(+)		GRCh37	DELETION			ARID5B-intragenic	PRECISE	3to5	ARID5B (NM_032199) Rearrangement : c.847-1236_c.3325del			36907	23767	20759		
P-0027811-T01-IM6	SOMATIC	ARID5B		10	10	63852782	63862183	Exon 10 of ARID5B(+)	IGR: 53Kb before ARID5B(+)		GRCh37	INVERSION			ARID5B-intragenic	PRECISE	3to3	ARID5B (NM_032199) rearrangement: c.3560:ARID5B_chr10:g.463862183inv			9401	221	291	0	3
P-0033492-T01-IM6	SOMATIC	ARID5B		10	10	63852117	63926333	Exon 10 of ARID5B(+)	IGR: 27Kb before RTKN2(-)		GRCh37	DUPLICATION			ARID5B-intragenic	PRECISE	5to3	ARID5B (NM_032199) rearrangement: c.2895:ARID5B_chr10:g.63926333dup			74216	3678	4852	0	4
P-0040413-T01-IM6	SOMATIC	ARID5B		10	10	61604169	63759806	Intron of CCDC6(-):8Kb after exon 2	Intron of ARID5B(+):43bp before exon 4		GRCh37	DELETION			ARID5B-intragenic	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.503-44:ARID5B_chr10:g.61604169del			2155637	4323	5769	0	30
P-0061836-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63708233	63810577	Intron of ARID5B(+):8Kb after exon 3	Intron of ARID5B(+):69bp before exon 5		GRCh37	DELETION	10	10	Deletion of 1 exon : in frame	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.502+8066_c.734-70del	yes	unknown	102344	3871	3242	0	11
P-0050537-T01-IM6	SOMATIC	ARID5B		10	10	63810867	63819328	Intron of ARID5B(+):108bp after exon 5	Intron of ARID5B(+):274bp after exon 7		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.846+108_c.1101+274del			8461	1435	1845	0	10
P-0086587-T01-IM7	SOMATIC	ARID5B		10	10	63817123	63842904	Intron of ARID5B(+):46bp after exon 6	Intron of ARID5B(+):3Kb before exon 9		GRCh37	DELETION			Deletion of 2 exons : out of frame	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.1048+46_c.1200-2557del			25781	2068	2749	0	59
P-0020588-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63661191	63759813	5-UTR of ARID5B(+):277bp before coding start	Intron of ARID5B(+):36bp before exon 4		GRCh37	DELETION	10	14	Deletion within transcript	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.-278_c.503-37del	yes	unknown	98622	4480	3374	0	15
P-0063556-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63850640	63857980	Exon 10 of ARID5B(+)	Promoter of ARID5B(+):197Kb from tx start		GRCh37	DELETION	10	70	Deletion within transcript : mid-exon	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.1418:ARID5B_chr10:g.63857980del	yes	unknown	7340	13541	6097	0	73
P-0025739-T01-IM6	SOMATIC	ARID5B		10	10	63696495	63700095	Intron of ARID5B(+):3Kb before exon 3	Exon 3 of ARID5B(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.277-3447_c.430del			3600	637	645	0	6
P-0013625-T01-IM5	SOMATIC	ARID5B	ARID5B	10	10	63810358	63817020	Intron of ARID5B(+): 289bp before exon 5	Exon 6 of ARID5B(+)		GRCh37	DELETION	16	10	Deletion within transcript: mid-exon	PRECISE	3to5	ARID5B (NM_032199) rearrangement: c.734-289_c.991del	yes	unknown	6662	2537	1667	0	10
P-0061836-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63846653	63851249	Intron of ARID5B(+):994bp after exon 9	Exon 10 of ARID5B(+)		GRCh37	DUPLICATION	10	13	Duplication within transcript : mid-exon	PRECISE	5to3	ARID5B (NM_032199) rearrangement: c.1398+994_c.2027dup	yes	unknown	4596	4844	5333	0	15
P-0048227-T01-IM6	SOMATIC	ARID5B	ADK	10	10	63851926	76262735	Exon 10 of ARID5B(+)	Intron of ADK(+):86Kb before exon 7		GRCh37	DELETION	5	6	Protein Fusion: mid-exon  {ARID5B:ADK}	PRECISE	3to5	ARID5B (NM_032199) - ADK (NM_006721) rearrangement: c.2704:ARID5B_c.556-22279:ADKdel	yes	unknown	12410809	53567	71469	0	6
P-0052432-T01-IM6	SOMATIC	ARMC10	BRAF								GRCh37				ARMC10-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ARMC10-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes ARMC10 Exon2 (NM_001161009) and BRAF Exon9 (NM_004333). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon13 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0061303-T02-IM7	SOMATIC	ARRDC4	IGF1R	15	15	98512307	99192892	Intron of ARRDC4(+):45bp before exon 5	Exon 1 of IGF1R(+)		GRCh37	DELETION	10	26	Protein Fusion: mid-exon  {ARRDC4:IGF1R}	PRECISE	3to5	ARRDC4 (NM_183376) - IGF1R (NM_000875) rearrangement: c.626-46:ARRDC4_c.82:IGF1Rdel	yes	unknown	680585	3393	2922	0	26
P-0006617-T01-IM5	SOMATIC	ASAP2	ALK	2	2	9399298	30142753	Intron of ASAP2(+): 20Kb before exon 2	Intron of ALK(-): 106bp after exon 1		GRCh37	DELETION	10	11	Antisense fusion	PRECISE	3to5	ASAP2 (NM_003887) - ALK (NM_004304) rearrangement event : c.127-20148:ASAP2_c.667+106:ALKdel	yes	unknown	20743455	234507	231634	0	11
P-0025137-T01-IM6	SOMATIC	ASIC2	RAD51D	17	17	31959619	33430482	Intron of ASIC2(-):521Kb before exon 2	Exon 4 of RAD51D(-)		GRCh37	DUPLICATION	0	7	Protein Fusion: mid-exon  {ASIC2:RAD51D}	IMPPRECISE	5to3	ASIC2 (NM_001094) - RAD51D (NM_133629) Rearrangement : c.556-520534:ASIC2_c.322:RAD51Ddup	yes	unknown	1470863	5694	7330	0	8
P-0027597-T01-IM6	SOMATIC	ASXL1	GDAP1L1	20	20	31021764	42888843	Intron of ASXL1(+):44bp after exon 11	Intron of GDAP1L1(+):2Kb after exon 3		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	3to3	ASXL1 (NM_015338) rearrangement: c.1719+44:ASXL1_chr20:g.42888843inv	yes	unknown	11867079	154767	344961	0	49
P-0036392-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30959921	31019664	Intron of ASXL1(+):3Kb after exon 3	Intron of ASXL1(+):182bp after exon 9		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	3to3	ASXL1 (NM_015338) rearrangement: c.252+2995_c.979+182inv	yes	unknown	59743	6831	8110	0	14
P-0037099-T01-IM6	SOMATIC	ASXL1	SUN5	20	20	31016203	31520829	Exon 5 of ASXL1(+)	IGR: 51Kb before SUN5(-)		GRCh37	DUPLICATION	5	4	ASXL1-intragenic	PRECISE	5to3	ASXL1 (NM_015338) rearrangement: c.449:ASXL1_chr20:g.31520829dup	yes	unknown	504626	63409	116716	0	4
P-0069670-T01-IM7	SOMATIC	ASXL1	LINC01414	20	8	31022257	65205095	Exon 12 of ASXL1(+)	3-UTR of LOC102724623(-):76Kb after coding stop		GRCh37	TRANSLOCATION	4	5	ASXL1-intragenic	PRECISE	3to3	ASXL1 (NM_015338) rearrangement: t(8;20)(q12.3;q11.21)(chr8:g.65205095::chr20:g.31022257)	yes	unknown	0	0	0	0	5
P-0070768-T01-IM7	SOMATIC	ASXL1	ASXL1	20	20	30836978	30954224	IGR: 28Kb before KIF3B(+)	Exon 2 of ASXL1(+)		GRCh37	INVERSION	0	6	ASXL1-intragenic	IMPPRECISE	3to3	ASXL1 (NM_015338) rearrangement: c.95:ASXL1_chr20:g.30836978inv	yes	unknown	117246	2750	2306	0	6
P-0007136-T01-IM5	SOMATIC	ASXL1		20	20	31021147	31397730	Exon 11 of ASXL1(+)	IGR: 569bp after DNMT3B(+)		GRCh37	DELETION			ASXL1-intragenic	PRECISE	3to5	ASXL1 (NM_015338) rearrangement : c.1146_chr20:g.31397730del			376583	61668	106057	0	32
P-0030109-T01-IM6	SOMATIC	ASXL1		20	20	31021628	33684946	Exon 11 of ASXL1(+)	IGR: 18Kb before EDEM2(-)		GRCh37	DELETION			ASXL1-intragenic	PRECISE	3to5	ASXL1 (NM_015338) rearrangement: c.1627:ASXL1_chr20:g.33684946del			2663318	43198	34677	0	17
P-0055542-T01-IM6	SOMATIC	ASXL1		20	18	31019347	880444	Intron of ASXL1(+):38bp before exon 9	IGR: 24Kb before ADCYAP1(+)		GRCh37	TRANSLOCATION			ASXL1-intragenic	PRECISE	5to3	ASXL1 (NM_015338) rearrangement: t(18;20)(p11.32;q11.21)(chr18:g.880444::chr20:g.31019347)			0	0	0	0	30
P-0018556-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30971376	31022343	Intron of ASXL1(+):14Kb after exon 3	Exon 12 of ASXL1(+)		GRCh37	DUPLICATION	10	15	Duplication within transcript : mid-exon	PRECISE	5to3	ASXL1 (NM_015338) rearrangement: c.252+14450_c.1828dup	yes	unknown	50967	9655	23712	0	15
P-0011276-T01-IM5	SOMATIC	ASXL1	ASXL1	20	20	30996331	31017710	Intron of ASXL1(+): 20Kb before exon 4	Exon 7 of ASXL1(+)		GRCh37	DUPLICATION	60	32	Duplication within transcript: mid-exon	PRECISE	5to3	ASXL1 (NM_015338) rearrangement: c.253-19600_c.572dup	yes	unknown	21379	9928	11489	0	32
P-0073665-T01-IM7	SOMATIC	ASXL1	CBFA2T2	20	20	31020813	32207322	Intron of ASXL1(+):25bp after exon 10	Exon 4 of CBFA2T2(+)		GRCh37	DELETION	10	40	Protein Fusion: mid-exon  {ASXL1:CBFA2T2}	PRECISE	3to5	ASXL1 (NM_015338) - CBFA2T2 (NM_001032999) rearrangement: c.1085+25:ASXL1_c.421-1:CBFA2T2del	yes	unknown	1186509	47720	66519	0	40
P-0026710-T01-IM6	SOMATIC	ASXL1	TBCD	20	17	31023295	80876983	Exon 12 of ASXL1(+)	Intron of TBCD(+):1Kb before exon 24		GRCh37	TRANSLOCATION	10	22	Protein Fusion: mid-exon  {ASXL1:TBCD}	PRECISE	3to5	ASXL1 (NM_015338) - TBCD (NM_005993) rearrangement: t(17;20)(q25.3;q11.21)(chr17:g.80876983::chr20:g.31023295)	yes	unknown	0	0	0	0	22
P-0061902-T01-IM7	SOMATIC	ASXL1	TM9SF4	20	20	30749431	31024346	Intron of TM9SF4(+):263bp after exon 17	Exon 12 of ASXL1(+)		GRCh37	DUPLICATION	10	28	Protein Fusion: mid-exon  {ASXL1:TM9SF4}	PRECISE	5to3	ASXL1 (NM_015338) - TM9SF4 (NM_014742) rearrangement: c.3831:ASXL1_c.1779+263:TM9SF4dup	yes	unknown	274915	44936	43677	0	29
P-0013705-T01-IM5	SOMATIC	ASXL1	RALGAPB	20	20	31024182	37182615	Exon 12 of ASXL1(+)	Exon 22 of RALGAPB(+)		GRCh37	DELETION	39	37	Protein fusion: mid-exon (ASXL1-RALGAPB)	PRECISE	3to5	ASXL1 (NM_015338) - RALGAPB (NM_020336) rearrangement:  c.3667:ASXL1_c.3268:RALGAPBdel	yes	unknown	6158433	94368	70011	0	37
P-0042048-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25965334	26001062	Exon 12 of ASXL2(-)	Intron of ASXL2(-):7Kb before exon 5		GRCh37	INVERSION	10	14	ASXL2-intragenic	PRECISE	3to3	ASXL2 (NM_018263) rearrangement: c.404-6653_c.3872inv	yes	unknown	35728	26378	25571	0	13
P-0023926-T01-IM6	SOMATIC	ASXL2		2	2	25927336	25967159	IGR: 35Kb before ASXL2(-)	Exon 12 of ASXL2(-)		GRCh37	INVERSION			ASXL2-intragenic	PRECISE	3to3	ASXL2 (NM_018263) rearrangement: c.2047_chr2:g.25927336inv			39823	20655	25572	0	14
P-0072190-T01-IM7	SOMATIC	ASXL2	ASXL2	2	2	25978872	25980865	Intron of ASXL2(-):14bp after exon 9	Intron of ASXL2(-):1Kb after exon 8		GRCh37	DELETION	10	26	Deletion of 1 exon : out of frame	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.939+1486_c.1036+15del	yes	unknown	1993	761	81	0	28
P-0032500-T01-IM6	SOMATIC	ASXL2		2	2	25986088	26068200	Intron of ASXL2(-):4Kb before exon 8	Intron of ASXL2(-):149bp after exon 2		GRCh37	DELETION			Deletion of 5 exons : out of frame	PRECISE	3to5	ASXL2 (<Transcript_ID>) rearrangement: <mutalizer_gene2_cdna>_<mutalizer_gene1_cdna>del			82112	9129	7175	0	19
P-0049524-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25976876	25978948	Intron of ASXL2(-):368bp before exon 10	Exon 9 of ASXL2(-)		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.975_c.1037-368del	yes	unknown	2072	652	598	0	31
P-0042144-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25991675	25994901	Exon 6 of ASXL2(-)	Intron of ASXL2(-):492bp before exon 5		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.404-492_c.567del	yes	unknown	3226	1720	1520	0	6
P-0021722-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25972630	26068304	Exon 11 of ASXL2(-)	Intron of ASXL2(-):45bp after exon 2		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.140+46_c.1795del	yes	unknown	95674	18264	10633	0	13
P-0075122-T01-IM7	SOMATIC	ASXL2	ASXL2	2	2	25994357	25997475	Exon 5 of ASXL2(-)	Intron of ASXL2(-):3Kb before exon 5		GRCh37	DELETION	10	33	Deletion within transcript : mid-exon	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.404-3066_c.456del	yes	unknown	3118	542	913	0	33
P-0021421-T01-IM6	SOMATIC	ASXL2		2	2	25967162	26047478	Exon 12 of ASXL2(-)	Intron of ASXL2(-):18Kb before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ASXL2 (NM_018263) rearrangement: c.144-18272_c.2044del			80316	17733	18359	0	14
P-0080778-T03-IM7	SOMATIC	ASXL2		2	2	25982386	25987656	Exon 8 of ASXL2(-)	Intron of ASXL2(-):3Kb after exon 7		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	ASXL2 (NM_018263) rearrangement: c.775+2796_c.904dup			5270	732	1067	0	6
P-0036687-T02-IM6	SOMATIC	ASXL2	PPM1G	2	2	26022503	27624866	Intron of ASXL2(-):99bp before exon 4	Intron of PPM1G(-):7Kb after exon 1		GRCh37	DELETION	10	20	Protein Fusion: in frame  {PPM1G:ASXL2}	PRECISE	3to5	PPM1G (NM_177983) - ASXL2 (NM_018263) rearrangement: c.120+7304:PPM1G_c.253-99:ASXL2del	yes	unknown	1602363	10133	10560	0	22
P-0004892-T01-IM5	SOMATIC	ATAD1	PTEN	10	10	89542369	89720809	Intron of ATAD1(-): 2Kb after exon 5	Exon 8 of PTEN(+)		GRCh37	DELETION			ATAD1-PTEN Fusion	PRECISE	3to5	ATAD1 (NM_032810) - PTEN (NM_000314) rearrangement: c.583+1858:ATAD1_NM_000314.4:c.960:PTENdel			178440	10156	6209	0	15
P-0083025-T01-IM7	SOMATIC	ATE1	FGFR2	10	10	123279761	123676625	Intron of FGFR2(-):78bp before exon 7	Intron of ATE1(-):3Kb before exon 4		GRCh37	DELETION			Protein Fusion: out of frame  {ATE1:FGFR2}	PRECISE	3to5	ATE1 (NM_001001976) - FGFR2 (NM_000141) fusion: c.234-3217:ATE1_c.749-78:FGFR2del			396864	9802	278756	0	6
P-0029943-T01-IM6	SOMATIC	ATF1	ERBB3	12	12	51167430	56488299	5-UTR of ATF1(+):6Kb before coding start	Exon 15 of ERBB3(+)		GRCh37	DELETION	10	5	Protein Fusion: mid-exon  {ATF1:ERBB3}	PRECISE	3to5	ATF1 (NM_005171) - ERBB3 (NM_001982) rearrangement: c.-6-6493:ATF1_c.1818:ERBB3del	yes	unknown	5320869	24864	36689	0	5
P-0063594-T01-IM7	SOMATIC	ATM	IL18	11	11	108163468	112017079	Exon 30 of ATM(+)	Intron of IL18(-):2Kb after exon 4		GRCh37	DELETION	7	3	Antisense Fusion	PRECISE	3to5	ATM (NM_000051) rearrangement: c.4559:ATM_chr11:g.112017079del	yes	unknown	3853611	61141	69414	0	5
P-0029353-T01-IM6	SOMATIC	ATM		11	11	108206688	108253231	Exon 56 of ATM(+)	Promoter of C11orf65(-):495bp from tx start		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	ATM (NM_000051) Rearrangment: c.8268:ATM_chr11:g.108253231del			46543	4967	2156	0	25
P-0068121-T01-IM7	SOMATIC	ATM	ATM	11	11	106162816	108165569	IGR: 41Kb before LOC101928535(+)	Intron of ATM(+):84bp before exon 32		GRCh37	DELETION	10	41	ATM-intragenic	PRECISE	3to5	ATM (NM_000051) rearrangement: c.4777-85:ATM_chr11:g.106162816del	yes	unknown	2002753	75112	44167	0	43
P-0070624-T01-IM7	SOMATIC	ATM	ATM	11	11	69813302	108141690	IGR: 89Kb before LOC101928443(-)	Intron of ATM(+):100bp before exon 19		GRCh37	INVERSION	10	53	ATM-intragenic	PRECISE	5to5	ATM (NM_000051) rearrangement: c.2839-101:ATM_chr11:g.69813302inv	yes	unknown	38328388	202238	375848	0	58
P-0079023-T02-IM7	SOMATIC	ATM	PRKAG2	11	7	108173627	151402432	Exon 36 of ATM(+)	Intron of PRKAG2(-):30Kb before exon 4		GRCh37	TRANSLOCATION	10	7	ATM-intragenic	PRECISE	5to3	ATM (NM_000051) rearrangement: t(7;11)(q36.1;q22.3)(chr7:g.151402432::chr11:g.108173627)	yes	unknown	0	0	0	0	7
P-0008947-T01-IM5	SOMATIC	ATM		11	6	108160279	80553916	Intron of ATM(+): 50bp before exon 29	IGR: 71Kb before ELOVL4(-)		GRCh37	TRANSLOCATION			ATM-intragenic	IMPRECISE	5to3	ATM (NM_000051) Rearrangement : t(6;11)(6q14.1;11q22.3)(chr6:g.80553916::chr11:g.108160279)			0	0	0	0	17
P-0013660-T01-IM5	SOMATIC	ATM		11	11	108206582	112801427	Exon 56 of ATM(+)	IGR: 31Kb before NCAM1(+)		GRCh37	DELETION			ATM-intragenic	PRECISE	3to5	ATM (NM_000051) Rearrangement : c.8162_chr11:g.112801427del			4594845	27138	28701	0	8
P-0021201-T01-IM6	SOMATIC	ATM		11	11	108155126	109110999	Exon 26 of ATM(+)	IGR: 182Kb before C11orf87(+)		GRCh37	INVERSION			ATM-intragenic	PRECISE	3to3	ATM (NM_000051) rearrangement: c.3919:ATM_chr11:g.109110999inv			955873	49931	85282	0	3
P-0025002-T01-IM6	SOMATIC	ATM		11	9	108190712	83867679	Exon 44 of ATM(+)	IGR: 331Kb before TLE1(-)		GRCh37	TRANSLOCATION			ATM-intragenic	PRECISE	5to5	ATM (NM_000051) rearrangement: t(9;11)(q21.31;q22.3)(chr9:g.83867679::chr11:g.108190712)			0	0	0	0	20
P-0083200-T01-IM7	SOMATIC	ATM		11	8	108186758	81436703	Exon 42 of ATM(+)	3-UTR of ZBTB10(+):39Kb after coding stop		GRCh37	TRANSLOCATION			ATM-intragenic	PRECISE	3to3	ATM (NM_000051) rearrangement: t(8;11)(q21.13;q22.3)(chr8:g.81436703::chr11:g.108186758)			0	0	0	0	20
P-0076722-T01-IM7	SOMATIC	ATM	ATM	11	11	108177958	108178712	Intron of ATM(+):665bp before exon 38	Intron of ATM(+):1bp after exon 38		GRCh37	DELETION	10	19	Deletion of 1 exon : out of frame	PRECISE	3to5	ATM (NM_000051) rearrangement: c.5675-666_c.5762+1del	yes	unknown	754	962	86	0	24
P-0021230-T01-IM6	SOMATIC	ATM	ATM	11	11	108119757	108203512	Exon 9 of ATM(+)	Exon 53 of ATM(+)		GRCh37	DELETION	10	25	Deletion within transcript : mid-exon	PRECISE	3to5	ATM (NM_000051) rearrangement: c.1163_c.7812del	yes	unknown	83755	77253	62722	0	26
P-0021355-T01-IM6	SOMATIC	ATM	ATM	11	11	108176314	108192120	Intron of ATM(+):735bp after exon 37	Exon 45 of ATM(+)		GRCh37	DELETION	10	12	Deletion within transcript : mid-exon	PRECISE	3to5	ATM (NM_000051) rearrangement: c.5674+735_c.6545del	yes	unknown	15806	10240	2821	0	12
P-0015727-T01-IM6	SOMATIC	ATM	ATM	11	11	108187209	108188177	Intron of ATM(+): 369bp after exon 42	Exon 43 of ATM(+)		GRCh37	DELETION	0	12	Deletion within transcript: mid-exon	IMPRECISE	3to5	ATM (NM_000051) Rearrangement : c.6198+369_6276del	yes	unknown	968	867	606	0	12
P-0075811-T02-IM7	SOMATIC	ATM	ACER3	11	11	76696514	108119858	Intron of ACER3(+):172bp before exon 4	Intron of ATM(+):29bp after exon 9		GRCh37	DUPLICATION			Protein Fusion: in frame  {ATM:ACER3}	IMPPRECISE	5to3	ATM (NM_000051) - ACER3 (NM_018367) rearrangement: c.1235+29:ATM_c.321-173:ACER3dup			31423344	207264	240690	0	5
P-0021321-T01-IM6	SOMATIC	ATM	DDX10	11	11	108165708	108680217	Exon 32 of ATM(+)	Intron of DDX10(+):29Kb before exon 14		GRCh37	DUPLICATION	10	17	Protein Fusion: mid-exon  {DDX10:ATM}	PRECISE	5to3	DDX10 (NM_004398) - ATM (NM_000051) rearrangement: c.1966-28956:DDX10_c.4831:ATMdup	yes	unknown	514509	39656	48675	0	18
P-0062535-T01-IM7	SOMATIC	ATM	MTUS2	13	11	29908237	108186976	Intron of MTUS2(+):9Kb after exon 5	Intron of ATM(+):136bp after exon 42		GRCh37	TRANSLOCATION	10	37	Protein Fusion: out of frame  {ATM:MTUS2}	PRECISE	5to3	ATM (NM_000051) - MTUS2 (NM_001033602) rearrangement: t(11;13)(q22.3;q12.3)(chr11:g.108186976::chr13:g.29908237)	yes	unknown	0	0	0	0	38
P-0064110-T01-IM7	SOMATIC	ATM	ATM	11	11	98969271	108153350	5-UTR of CNTN5(+):458Kb before coding start	Intron of ATM(+):86bp before exon 25		GRCh37	DELETION	10	16	Transcript Fusion {CNTN5:ATM}	PRECISE	3to5	ATM (NM_000051) rearrangement: c.3577-87:ATM_chr11:g.98969271del	yes	unknown	9184079	104118	79271	0	16
P-0035466-T01-IM6	SOMATIC	ATP1A2	NTRK1	1	1	156844714	160106162	Exon 11 of NTRK1(+)	Intron of ATP1A2(+):2bp after exon 18		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {ATP1A2:NTRK1}	PRECISE	5to3	ATP1A2 (NM_000702) - NTRK1 (NM_002529) rearrangement: c.2563+2:ATP1A2_c.1268:NTRK1dup			3261448	26435	23696	0	3
P-0012773-T01-IM5	SOMATIC	ATP1B2	TP53	17	17	7552584	7578475	Promoter of ATP1B2(+): 2Kb from tx start	Exon 5 of TP53(-)		GRCh37	DELETION	51	26	Antisense fusion	PRECISE	3to5	TP53 (NM_000546) rearrangment: chr17:g.7552584_c.455:TP53del	yes	unknown	25891	15344	8759	0	26
P-0021104-T01-IM6	SOMATIC	ATP1B2	TP53	17	17	7562760	7576880	Promoter of ATP1B2(+):9Kb from tx start	Exon 9 of TP53(-)		GRCh37	DELETION	10	21	Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: g.7562760_c.966del	yes	unknown	14120	7629	3337	0	23
P-0085354-T01-IM7	SOMATIC	ATP2B2	MSH3	5	3	79974760	10427542	Exon 8 of MSH3(+)	Intron of ATP2B2(-):2Kb after exon 6		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {ATP2B2:MSH3}	PRECISE	5to5	ATP2B2 (NM_001001331) - MSH3 (NM_002439) rearrangement: t(3;5)(p25.3;q14.1)(chr3:g.10427542::chr5:g.79974760)			0	0	0	0	5
P-0062125-T02-IM7	SOMATIC	ATR	PLSCR5	3	3	142171944	146495341	Intron of ATR(-):25bp after exon 46	IGR: 192Kb before PLSCR5(-)		GRCh37	DELETION	10	24	ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: c.7761+26:ATR_chr3:g.146495341del	yes	unknown	4323397	64348	103252	0	24
P-0068085-T01-IM7	SOMATIC	ATR	ATR	X	3	11103748	142272189	IGR: 26Kb before HCCS(+)	Exon 13 of ATR(-)		GRCh37	TRANSLOCATION	10	6	ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: t(3;X)(q23;p22.2)(chr3:g.142272189::chrX:g.11103748)	yes	unknown	0	0	0	0	6
P-0029690-T03-IM7	SOMATIC	ATR	C3or	3	3	142269262	144004698	Intron of ATR(-):118bp before exon 14	IGR: 313Kb before C3orf58(+)		GRCh37	DELETION	10	11	ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: c.2806-118:ATR_chr3:g.144004698del	yes	unknown	1735436	19718	39602	0	11
P-0077617-T01-IM7	SOMATIC	ATR	LINC01322	3	3	142281253	165064946	Exon 4 of ATR(-)	5-UTR of LINC01322(+):167Kb before coding start		GRCh37	DELETION	10	56	ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: c.991:ATR_chr3:g.165064946del	yes	unknown	22783693	67726	100693	0	56
P-0077835-T02-IM7	SOMATIC	ATR	ATR	3	3	75526844	142266306	IGR: 56Kb before FAM86DP(-)	Intron of ATR(-):260bp after exon 16		GRCh37	DELETION	7	15	ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: c.3357+261:ATR_chr3:g.75526844del	yes	unknown	66739462	288385	330527	0	17
P-0012976-T01-IM5	SOMATIC	ATR		17	3	21429234	142297572	IGR: 2Kb before C17orf51(-)	5-UTR of ATR(-): 26bp before coding start		GRCh37	TRANSLOCATION			ATR-intragenic	PRECISE	3to3	ATR (NM_00118) rearrangement: t(3;17)(q23;p11.2)(chr3:g.142297572::chr17:g.21429234)			0	0	0	0	30
P-0023835-T01-IM6	SOMATIC	ATR		3	2	142177842	41959144	Exon 44 of ATR(-)	IGR: 146Kb before LOC388942(+)		GRCh37	TRANSLOCATION			ATR-intragenic	PRECISE	5to5	ATR (NM_001184) rearrangement: t(8;13)(p21;q23)(chr2:g.41959144::chr3:g.142177842)			0	0	0	0	41
P-0024537-T01-IM6	SOMATIC	ATR		3	3	142275498	147951936	Intron of ATR(-):81bp before exon 9	IGR: 464Kb before AGTR1(+)		GRCh37	INVERSION			ATR-intragenic	PRECISE	3to3	ATR (NM_001184) rearrangement: c.1886-81:ATR_chr3:g.147951936inv			5676438	15368	9936	0	3
P-0032753-T01-IM6	SOMATIC	ATR		3	3	138900546	142177877	IGR: 51Kb before PISRT1(-)	Exon 44 of ATR(-)		GRCh37	DELETION			ATR-intragenic	PRECISE	3to5	ATR (NM_001184) rearrangement: c.7426:ATR_chr3:g.138900546del			3277331	5371	8550	0	22
P-0050573-T02-IM7	SOMATIC	ATR		3	3	142272339	142507912	Intron of ATR(-):99bp before exon 13	Intron of TRPC1(+):2Kb before exon 7		GRCh37	DELETION			ATR-intragenic	IMPPRECISE	3to5	ATR (NM_001184) rearrangement: c.2634-99:ATR_chr3:g.142507912del			235573	16832	20331	0	8
P-0022967-T01-IM6	SOMATIC	ATR	ATR	3	3	142267020	142272410	Intron of ATR(-):268bp before exon 16	Intron of ATR(-):71bp after exon 12		GRCh37	DELETION	10	17	Deletion of 3 exons : out of frame	PRECISE	3to5	ATR (NM_001184) Rearrangement : c.2633+72_c.3172-268del	yes	unknown	5390	4398	6249	0	18
P-0041420-T01-IM6	SOMATIC	ATR	ATR	3	3	142241682	142242828	Exon 23 of ATR(-)	Intron of ATR(-):6bp after exon 22		GRCh37	DELETION	7	2	Deletion within transcript : mid-exon	PRECISE	3to5	ATR (NM_001184) rearrangement: c.4152+7_c.4154del	yes	unknown	1146	504	175	0	2
P-0066705-T01-IM7	SOMATIC	ATR	ATR	3	3	142188960	142192420	Exon 37 of ATR(-)	Intron of ATR(-):3Kb before exon 37		GRCh37	DUPLICATION	10	6	Duplication within transcript : mid-exon	PRECISE	5to3	ATR (NM_001184) rearrangement: c.6222-3395_c.6287dup	yes	unknown	3460	166	647	0	7
P-0045182-T01-IM6	SOMATIC	ATR	ATR	3	3	119457467	142211923	Intron of MAATS1(+):634bp before exon 12	Intron of ATR(-):50bp after exon 35		GRCh37	INVERSION	10	15	Protein Fusion: in frame  {ATR:MAATS1}	PRECISE	5to5	ATR (NM_001184) rearrangement: c.6078+51:ATR_chr3:g.119457467inv	yes	unknown	22754456	129877	137448	0	15
P-0040588-T01-IM6	SOMATIC	ATR	ATR	3	3	141768495	142180968	Intron of TFDP2(-):43Kb after exon 3	Intron of ATR(-):36bp before exon 42		GRCh37	DUPLICATION	0	14	Protein Fusion: out of frame  {TFDP2:ATR}	IMPPRECISE	5to3	ATR (NM_001184) rearrangement: c.7042-36:ATR_chr3:g.141768495dup	yes	unknown	412473	6564	20030	0	14
P-0025691-T01-IM6	SOMATIC	ATRX	NSDHL	X	X	76944304	152032520	Intron of ATRX(-):6bp after exon 7	Intron of NSDHL(+):1Kb after exon 5		GRCh37	DUPLICATION	10	26	Antisense Fusion	PRECISE	5to3	ATRX (NM_000489) - NSDHL (NM_015922) rearrangement: c.594+7:ATRX_c.543+1252:NSDHLdup	yes	unknown	75088216	52293	85199	0	30
P-0043297-T01-IM6	SOMATIC	ATRX	BRDTP1	X	X	76940137	95562235	Intron of ATRX(-):52bp before exon 9	IGR: 30Kb before BRDTP1(-)		GRCh37	DELETION	10	19	ATRX-intragenic	PRECISE	3to5	ATRX (NM_000489) rearrangement: c.663-52:ATRX_chrX:g.95562235del	yes	unknown	18622098	17389	27523	0	20
P-0056305-T01-IM6	SOMATIC	ATRX	ATRX	X	X	73884061	76907739	IGR: 69Kb before KIAA2022(-)	Exon 15 of ATRX(-)		GRCh37	DELETION	10	11	ATRX-intragenic	PRECISE	3to5	ATRX (NM_000489) rearrangement: c.4422:ATRX_chrX:g.73884061del	yes	unknown	3023678	46645	24439	0	11
P-0010338-T01-IM5	SOMATIC	ATRX		X	14	76918982	21586971	Exon 12 of ATRX(-)	IGR: 20Kb before C14orf176(+)		GRCh37	TRANSLOCATION			ATRX-intragenic	PRECISE	3to5	ATRX (NM_000489) rearrangement : t(X;14)(q21.1;q11.2)(chrX:g.76918982::chr14:g.21586971)			0	0	0	0	40
P-0022291-T01-IM6	SOMATIC	ATRX		X	X	76926078	76939063	Intron of ATRX(-):6Kb after exon 10	Exon 9 of ATRX(-)		GRCh37	INVERSION			ATRX-intragenic	PRECISE	3to3	ATRX (NM_000489) rearrangement: c.1685_c.3809+5643inv			12985	14038	8345	0	43
P-0035779-T01-IM6	SOMATIC	ATRX		X	X	76855957	78159921	Exon 23 of ATRX(-)	IGR: 3Kb before MIR4328(-)		GRCh37	INVERSION			ATRX-intragenic	PRECISE	5to5	ATRX (NM_000489) rearrangement: c.5643:ATRX_chrX:g.78159921inv			1303964	53607	46995	0	10
P-0072748-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76777928	76781159	Intron of ATRX(-):62bp before exon 32	Intron of ATRX(-):2Kb before exon 31		GRCh37	DELETION	10	13	Deletion of 1 exon : in frame	PRECISE	3to5	ATRX (NM_000489) rearrangement: c.6700-2280_c.6850-62del	yes	unknown	3231	134	551	0	13
P-0064183-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76938482	76955934	Exon 9 of ATRX(-)	Intron of ATRX(-):2Kb before exon 3		GRCh37	DELETION	10	88	Deletion within transcript : mid-exon	PRECISE	3to5	ATRX (NM_000489) rearrangement: c.134-1817_c.2266del	yes	unknown	17452	13775	16086	0	90
P-0072874-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76936933	76958539	Intron of ATRX(-):78bp after exon 9	Intron of ATRX(-):4Kb before exon 3		GRCh37	DUPLICATION	10	36	Duplication of 7 exons : in frame	PRECISE	5to3	ATRX (NM_000489) rearrangement: c.134-4422_c.3736+79dup	yes	unknown	21606	11913	14257	0	36
P-0077835-T02-IM7	SOMATIC	ATRX	SCAPER	X	15	76921803	77025437	Intron of ATRX(-):2Kb before exon 11	Intron of SCAPER(-):132bp after exon 15		GRCh37	TRANSLOCATION	10	79	Protein Fusion: out of frame  {ATRX:SCAPER}	PRECISE	5to3	ATRX (NM_000489) - SCAPER (NM_020843) rearrangement: t(15;X)(q24.3;q21.1)(chr15:g.77025437::chrX:g.76921803)	yes	unknown	0	0	0	0	80
P-0075127-T01-IM7	SOMATIC	ATXN7	CADM2	3	3	63981961	85575029	Exon 11 of ATXN7(+)	Intron of CADM2(+):276Kb before exon 2		GRCh37	INVERSION	6	5	Antisense Fusion	PRECISE	3to3	ATXN7 (NM_001177387) rearrangement: c.2463:ATXN7_chr3:g.85575029inv	yes	unknown	21593068	119303	170850	0	4
P-0063805-T01-IM7	SOMATIC	ATXN7		3	3	63982187	70543251	Intron of ATXN7(+):28bp after exon 11	IGR: 461Kb before FOXP1(-)		GRCh37	DELETION			ATXN7-intragenic	PRECISE	3to5	ATXN7 (NM_001177387) rearrangement: c.2661+28:ATXN7_chr3:g.70543251del			6561064	37113	36845	0	21
P-0069638-T03-IM7	SOMATIC	ATXN7		3	3	63981074	63982011	Intron of ATXN7(+):106bp before exon 11	Exon 11 of ATXN7(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ATXN7 (NM_001177387) rearrangment:c.1683-107C>T:ATXN7_chr3:g.63982011del			937	5566	7334	1	9
P-0077428-T02-IM7	SOMATIC	ATXN7L1	BRAF	7	7	105464519	140482112	Intron of ATXN7L1(-):35Kb before exon 3	Intron of BRAF(-):619bp before exon 11		GRCh37	DUPLICATION	10	13	Protein Fusion: out of frame  {ATXN7L1:BRAF}	PRECISE	5to3	ATXN7L1 (NM_020725) - BRAF (NM_004333) fusion: c.251-35365:ATXN7L1_c.1315-619:BRAFdup	yes	unknown	35017593	196098	174662	0	13
P-0067048-T02-IM7	SOMATIC	AURKA	CTCFL	20	20	54956816	56057363	Intron of AURKA(-):189bp before exon 6	IGR: 14Kb before CTCFL(-)		GRCh37	INVERSION	6	5	AURKA-intragenic	PRECISE	3to3	AURKA (NM_003600) rearrangement: c.567-189:AURKA_chr20:g.56057363inv	yes	unknown	1100547	6511	17356	0	5
P-0046931-T02-IM6	SOMATIC	AURKA		20	20	54729689	54963098	IGR: 94Kb before MC3R(+)	Intron of AURKA(-):113bp after exon 2		GRCh37	DELETION			AURKA-intragenic	IMPPRECISE	3to5	AURKA (NM_003600) rearrangement: c.42+114:AURKA_chr20:g.54729689del			233409	11522	24667	0	16
P-0036525-T01-IM6	SOMATIC	AURKA	RAB3GAP2	20	1	54958234	220440791	Intron of AURKA(-):2bp before exon 5	Intron of RAB3GAP2(-):5Kb after exon 1		GRCh37	TRANSLOCATION	0	13	Protein Fusion: out of frame  {RAB3GAP2:AURKA}	IMPPRECISE	3to5	RAB3GAP2 (NM_012414) - AURKA (NM_003600) rearrangement: t(1;20)(q41;q13.31)(chr1:g.220440791::chr20:g.54958234)	yes	unknown	0	0	0	0	16
P-0038328-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348008	349553	Exon 6 of AXIN1(-)	Intron of AXIN1(-):1Kb before exon 6		GRCh37	INVERSION	10	47	Antisense Fusion	PRECISE	5to5	AXIN1 (NM_003502) rearrangement: c.1498_c.1255-1302inv	yes	unknown	1545	2818	3438	0	77
P-0070333-T01-IM7	SOMATIC	AXIN1	FSCB	16	14	338004	43650432	3-UTR of AXIN1(-):117bp after coding stop	IGR: 1Mb before FSCB(-)		GRCh37	TRANSLOCATION	10	44	AXIN1-intragenic	PRECISE	5to5	AXIN1 (NM_003502) rearrangement: t(14;16)(q21.2;p13.3)(chr14:g.43650432::chr16:g.338004)	yes	unknown	0	0	0	1	51
P-0025086-T01-IM6	SOMATIC	AXIN1		16	1	347118	111333805	Exon 7 of AXIN1(-)	IGR: 80Kb before CD53(+)		GRCh37	TRANSLOCATION			AXIN1-intragenic	PRECISE	5to3	AXIN1 (NM_003502) rearrangement: t(1;16)(p13.3;p13.3)(chr1:g.111333805::chr16:g.347118)			0	0	0	0	16
P-0089079-T01-IM7	SOMATIC	AXIN1		16	16	340656	346873	Intron of AXIN1(-):533bp after exon 9	Intron of AXIN1(-):182bp after exon 7		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	AXIN1 (NM_003502) rearrangement: c.1955+183_c.2294+534del			6217	2666	3619	0	13
P-0053943-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348266	380024	Intron of AXIN1(-):15bp before exon 6	Intron of AXIN1(-):15Kb before exon 3		GRCh37	DELETION	10	24	Deletion of 3 exons : out of frame	PRECISE	3to5	AXIN1 (NM_003502) rearrangement: c.879-15341_c.1255-15del	yes	unknown	31758	8999	13457	0	24
P-0079673-T02-IM7	SOMATIC	AXIN1	RBFOX1	16	16	396307	6514787	Exon 2 of AXIN1(-)	5-UTR of RBFOX1(+):587Kb before coding start		GRCh37	INVERSION	10	29	Protein Fusion: mid-exon  {AXIN1:RBFOX1}	PRECISE	5to5	AXIN1 (NM_003502) rearrangement: c.719:AXIN1_chr16:g.6514787inv	yes	unknown	6118480	169237	377941	0	35
P-0077027-T01-IM7	SOMATIC	AXIN2	AXIN2	20	17	50255715	63534201	Intron of ATP9A(-):166bp after exon 15	Intron of AXIN2(-):119bp after exon 5		GRCh37	TRANSLOCATION	10	10	Antisense Fusion	PRECISE	5to5	AXIN2 (NM_004655) rearrangement: t(17;20)(q24.1;q13.2)(chr17:g.63534201::chr20:g.50255715)	yes	unknown	0	0	0	0	11
P-0034192-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63512989	63533505	IGR: 12Kb before AXIN2(-)	Exon 6 of AXIN2(-)		GRCh37	DUPLICATION	8	5	AXIN2-intragenic	PRECISE	5to3	AXIN2 (NM_004655) rearrangement: c.1649_chr17:g.63512989dup	yes	unknown	20516	11580	15651	0	5
P-0052848-T01-IM6	SOMATIC	AXIN2	CEP112	17	17	63532989	63586778	Exon 7 of AXIN2(-)	IGR: 45Kb before CEP112(-)		GRCh37	INVERSION	10	3	AXIN2-intragenic	PRECISE	5to5	AXIN2 (NM_004655) rearrangement: c.1905:AXIN2_chr17:g.63586778inv	yes	unknown	53789	19525	28854	0	6
P-0021000-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63525528	63533095	3-UTR of AXIN2(-):565bp after coding stop	Exon 7 of AXIN2(-)		GRCh37	DELETION	5	3	AXIN2-intragenic	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.*566_c.1799del	yes	unknown	7567	9634	8307	0	3
P-0037107-T01-IM6	SOMATIC	AXIN2	CEP112	17	17	63526308	64027168	Intron of AXIN2(-):88bp before exon 11	Intron of CEP112(-):1Kb before exon 11		GRCh37	INVERSION	10	36	AXIN2-intragenic	PRECISE	3to3	AXIN2 (NM_004655) rearrangement: c.2406-88:AXIN2_chr17:g.64027168inv	yes	unknown	500860	41295	39381	0	36
P-0040596-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63504771	63533659	IGR: 20Kb before AXIN2(-)	Exon 6 of AXIN2(-)		GRCh37	DELETION	10	12	AXIN2-intragenic	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.1495:AXIN2_chr17:g.63504771del	yes	unknown	28888	15921	16315	0	13
P-0056667-T02-IM6	SOMATIC	AXIN2		17	17	63530054	65771907	Exon 10 of AXIN2(-)	IGR: 35Kb before SNORA38B(+)		GRCh37	INVERSION			AXIN2-intragenic	PRECISE	5to5	AXIN2 (NM_004655) rearrangement: c.2381:AXIN2_chr17:g.65771907inv			2241853	30545	60495	0	108
P-0057027-T01-IM6	SOMATIC	AXIN2		17	17	63486594	63529976	IGR: 38Kb before AXIN2(-)	Intron of AXIN2(-):53bp after exon 10		GRCh37	INVERSION			AXIN2-intragenic	PRECISE	5to5	AXIN2 (NM_004655) rearrangement: c.2405+54:AXIN2_chr17:g.63486594inv			43382	1846	1809	0	11
P-0019637-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63554195	63555053	Exon 2 of AXIN2(-)	5-UTR of AXIN2(-):29Kb before coding start		GRCh37	DELETION	10	63	Deletion within transcript : mid-exon	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.544_c.-116-199del	yes	unknown	858	5377	1400	0	66
P-0046793-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63554036	63555989	Exon 2 of AXIN2(-)	5-UTR of AXIN2(-):30Kb before coding start		GRCh37	DELETION	10	37	Deletion within transcript : mid-exon	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.703:AXIN2_chr17:g.63555989del	yes	unknown	1953	3149	3488	0	38
P-0046108-T01-IM6	SOMATIC	AXIN2		17	17	63534454	63550860	Exon 5 of AXIN2(-)	Intron of AXIN2(-):3Kb after exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.815+3064_c.1067del			16406	1756	2555	0	60
P-0060830-T01-IM7	SOMATIC	AXIN2		17	17	63527607	63534433	Intron of AXIN2(-):1Kb before exon 11	Exon 5 of AXIN2(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	AXIN2 (NM_004655) rearrangement: c.1088_c.2406-1387del			6826	17203	22291	0	10
P-0069804-T01-IM7	SOMATIC	AXIN2	AXIN2	17	17	63543565	63553961	Intron of AXIN2(-):2Kb after exon 3	Exon 2 of AXIN2(-)		GRCh37	DUPLICATION	0	6	Duplication within transcript : mid-exon	IMPPRECISE	5to3	AXIN2 (NM_004655) rearrangement: c.778_c.956+2073dup	yes	unknown	10396	1753	5261	0	6
P-0034255-T01-IM6	SOMATIC	AXL	HNRNPUL1	19	19	41725494	41772863	Intron of AXL(+):112bp after exon 1	Intron of HNRNPUL1(+):1Kb before exon 2		GRCh37	INVERSION	10	14	Antisense Fusion	PRECISE	3to3	AXL (NM_021913) - HNRNPUL1 (NM_007040) rearrangement: c.85+112:AXL_c.296-1265:HNRNPUL1inv	yes	unknown	47369	45138	35915	0	14
P-0075617-T02-IM7	SOMATIC	AXL	AXL	19	19	41749059	41750693	Intron of AXL(+):139bp after exon 11	Intron of AXL(+):1Kb after exon 12		GRCh37	INVERSION	0	5	Antisense Fusion	IMPPRECISE	3to3	AXL (NM_021913) rearrangement: c.1445+139_c.1537+1081inv	yes	unknown	1634	1055	1084	0	5
P-0038162-T01-IM6	SOMATIC	AXL		19	19	41739584	41754956	Intron of AXL(+):2Kb after exon 6	Intron of AXL(+):231bp after exon 14		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	AXL (NM_021913) rearrangement: c.783+2381_c.1711+231inv			15372	16316	31267	0	20
P-0031952-T01-IM6	SOMATIC	AXL	AXL	19	19	41765825	41769578	3-UTR of AXL(+):41Kb after coding stop	Promoter of AXL(+):44Kb from tx start		GRCh37	INVERSION	10	21	AXL-intragenic	PRECISE	3to3	AXL (NM_021913) Rearrangemnet: c.*16_c.*3769inv	yes	unknown	3753	215	388	0	21
P-0039692-T01-IM6	SOMATIC	AXL	SEMA3C	19	7	41759410	80327250	Intron of AXL(+):93bp before exon 17	IGR: 45Kb before SEMA3C(-)		GRCh37	TRANSLOCATION	10	12	AXL-intragenic	PRECISE	5to3	AXL (NM_021913) rearrangement: t(7;19)(q21.11;q13.2)(chr7:g.80327250::chr19:g.41759410)	yes	unknown	0	0	0	0	12
P-0029225-T01-IM6	SOMATIC	AXL	AXL	19	19	18915509	41726707	IGR: 22Kb before COMP(-)	Exon 2 of AXL(+)		GRCh37	DELETION	10	56	AXL-intragenic	PRECISE	3to5	AXL (NM_021913) Rearrangement: c.252:AXL_chr19:g.18915509del	yes	unknown	22811198	203481	264756	0	69
P-0064424-T01-IM7	SOMATIC	AXL	SYT10	19	12	41737313	33657572	Intron of AXL(+):110bp after exon 6	IGR: 129Kb before SYT10(-)		GRCh37	TRANSLOCATION	10	41	AXL-intragenic	PRECISE	3to5	AXL (NM_021913) rearrangement: t(12;19)(p11.1;q13.2)(chr12:g.33657572::chr19:g.41737313)	yes	unknown	0	0	0	0	40
P-0020861-T01-IM6	SOMATIC	AXL		19	15	41763332	20101904	Intron of AXL(+):65bp before exon 19	IGR: 386Kb before CHEK2P2(+)		GRCh37	TRANSLOCATION			AXL-intragenic	IMPPRECISE	5to5	AXL (NM_021913) rearrangement: t(15;19)(q11.1;q13.2)(chr15:g.20101904::chr19:g.41763332)			0	0	0	0	6
P-0028119-T01-IM6	SOMATIC	AXL		19	17	41748655	25669096	Intron of AXL(+):132bp before exon 11	IGR: 48Kb before WSB1(+)		GRCh37	TRANSLOCATION			AXL-intragenic	PRECISE	5to5	AXL (NM_021913) rearrangement: t(17;19)(q11.1;q13.2)(chr17:g.25669096::chr19:g.41748655)			0	0	0	0	5
P-0053249-T01-IM6	SOMATIC	AXL		19	19	22709779	41743953	3-UTR of LOC101929124(-):972bp after coding stop	Exon 7 of AXL(+)		GRCh37	INVERSION			AXL-intragenic	PRECISE	5to5	AXL (NM_021913) rearrangement: c.888:AXL_chr19:g.22709779inv			19034174	181677	234930	0	67
P-0034736-T01-IM6	SOMATIC	AXL	AXL	19	19	41735590	41745937	Intron of AXL(+):1Kb before exon 5	Intron of AXL(+):312bp after exon 10		GRCh37	DELETION	0	7	Deletion of 6 exons : in frame	IMPPRECISE	3to5	AXL (NM_021913) Rearrangement : c.587-1282_c.1312+312del	yes	unknown	10347	10615	15102	0	7
P-0022310-T01-IM6	SOMATIC	AXL	RNF2	19	1	41727868	185034625	Exon 4 of AXL(+)	5-UTR of RNF2(+):22Kb before coding start		GRCh37	TRANSLOCATION	10	6	Protein Fusion: mid-exon  {AXL:RNF2}	PRECISE	3to5	AXL (NM_021913) - RNF2 (NM_007212) Rearrangement: t(1;19)(q25.3;q13.2)(chr1:g.185034625::chr19:g.41727868)	yes	unknown	0	0	0	0	6
P-0046219-T01-IM6	SOMATIC	AXL	C19ORF68	19	19	41762540	48678698	Intron of AXL(+):24bp after exon 18	Intron of C19orf68(+):3Kb after exon 2		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {AXL:C19orf68}	PRECISE	3to5	AXL (NM_021913) rearrangement: c.2196+24:AXL_chr19:g.48678698del	yes	unknown	6916158	149039	158138	0	12
P-0071274-T01-IM7	SOMATIC	AXL	PEPD	19	19	33997000	41762756	Intron of PEPD(-):5Kb after exon 3	Intron of AXL(+):240bp after exon 18		GRCh37	INVERSION	10	5	Protein Fusion: out of frame  {AXL:PEPD}	PRECISE	3to3	AXL (NM_021913) - PEPD (NM_000285) rearrangement: c.2196+240:AXL_c.329+4934:PEPDinv	yes	unknown	7765756	106344	240818	0	5
P-0070738-T01-IM7	SOMATIC	AXL	AXL	19	19	39618549	41763640	5-UTR of PAK4(+):42Kb before coding start	Intron of AXL(+):106bp after exon 19		GRCh37	DUPLICATION	0	16	Transcript Fusion {AXL:PAK4}	IMPPRECISE	5to3	AXL (NM_021913) rearrangement: c.2333+106:AXL_chr19:g.39618549dup	yes	unknown	2145091	57349	155143	0	16
P-0079108-T01-IM7	SOMATIC	AXL		19	1	41754755	223309604	Intron of AXL(+):30bp after exon 14	5-UTR of TLR5(-):26Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {AXL:TLR5}	PRECISE	3to3	AXL (NM_021913) rearrangement: t(1;19)(q41;q13.2)(chr1:g.223309604::chr19:g.41754755)			0	0	0	0	53
P-0022424-T01-IM6	SOMATIC	AZIN1	PDGFRA	8	4	103867353	55130160	5-UTR of AZIN1(-):27Kb before coding start	Intron of PDGFRA(+):66bp after exon 4		GRCh37	TRANSLOCATION	0	7	Transcript Fusion {PDGFRA:AZIN1}	IMPPRECISE	3to3	PDGFRA (NM_006206) rearrangement: t(4;8)(q12;q22.3)(chr4:g.55130160::chr8:g.103867353)	yes	unknown	0	0	0	0	7
P-0012779-T01-IM5	SOMATIC	B2M	B2M	15	15	45007899	45009802	Exon 2 of B2M(+)	3-UTR of B2M(+): 1Kb after coding stop		GRCh37	DELETION	21	19	B2M-intragenic	PRECISE	3to5	B2M (NM_004048) rearrangement: c.346_c.*15-3del	yes	unknown	1903	949	1202	0	19
P-0020694-T01-IM6	SOMATIC	B2M	B2M	15	15	44989687	45007696	IGR: 14Kb before B2M(+)	Exon 2 of B2M(+)		GRCh37	DELETION	10	35	B2M-intragenic	PRECISE	3to5	B2M (NM_004048) rearrangement: chr15:g.44989687_c.143:B2Mdel	yes	unknown	18009	3628	1730	0	36
P-0051033-T01-IM6	SOMATIC	B2M	B2M	15	15	44978049	45007565	IGR: 20Kb before PATL2(-)	Intron of B2M(+):55bp before exon 2		GRCh37	DELETION	10	5	B2M-intragenic	PRECISE	3to5	B2M (NM_004048) rearrangement: c.68-56:B2M_chr15:g.44978049del	yes	unknown	29516	2323	1929	0	18
P-0054401-T01-IM6	SOMATIC	B2M	B2M	15	15	44999558	45008521	IGR: 4Kb before B2M(+)	Intron of B2M(+):5bp before exon 3		GRCh37	DELETION	10	6	B2M-intragenic	PRECISE	3to5	B2M (NM_004048) rearrangement: c.347-6:B2M_chr15:g.44999558del	yes	unknown	8963	5109	3801	0	6
P-0064041-T01-IM7	SOMATIC	B2M	B2M	15	15	44926198	45007477	Intron of SPG11(-):363bp before exon 8	Intron of B2M(+):143bp before exon 2		GRCh37	DELETION	10	14	B2M-intragenic	PRECISE	3to5	B2M (NM_004048) rearrangement: c.68-144:B2M_chr15:g.44926198del	yes	unknown	81279	3554	2942	0	14
P-0069369-T01-IM7	SOMATIC	B2M	B2M	15	15	45007901	45009803	Intron of B2M(+):2bp after exon 2	3-UTR of B2M(+):6Kb after coding stop		GRCh37	DELETION	0	5	B2M-intragenic	IMPPRECISE	3to5	B2M (NM_004048) rearrangement: c.346+2:B2M_chr15:g.45009803del	yes	unknown	1902	1166	880	0	5
P-0069622-T01-IM7	SOMATIC	B2M	B2M	15	15	45007901	45009803	Intron of B2M(+):2bp after exon 2	3-UTR of B2M(+):6Kb after coding stop		GRCh37	DELETION	0	74	B2M-intragenic	IMPPRECISE	3to5	B2M (NM_004048) rearrangement: c.346+2:B2M_chr15:g.45009803del	yes	unknown	1902	1290	1683	0	79
P-0051720-T01-IM6	SOMATIC	B2M	B2M	15	15	45006214	45011485	Intron of B2M(+):1Kb before exon 2	Promoter of B2M(+):8Kb from tx start		GRCh37	DELETION	10	14	Deletion within transcript	PRECISE	3to5	B2M (NM_004048) rearrangement: c.68-1407:B2M_chr15:g.45011485del	yes	unknown	5271	3565	3907	0	15
P-0023057-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)		GRCh37	DELETION	10	19	Deletion within transcript : mid-exon	PRECISE	3to5	B2M (NM_004048) rearrangement: c.67_c.68del	yes	unknown	3810	2223	2334	0	23
P-0031583-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	B2M (NM_004048) rearrangement: c.67_c.68del	yes	unknown	3810	1320	989	0	21
P-0054879-T01-IM6	SOMATIC	B2M	B2M	15	15	45004582	45007838	Intron of B2M(+):771bp after exon 1	Exon 2 of B2M(+)		GRCh37	DELETION	10	12	Deletion within transcript : mid-exon	PRECISE	3to5	B2M (NM_004048.2) rearrangement: c.67+771:B2M_c.285:B2Mdel	yes	unknown	3256	2098	1395	0	12
P-0039257-T01-IM6	SOMATIC	B2M	B2M	15	15	45002849	45003765	Promoter of B2M(+):835bp from tx start	Exon 1 of B2M(+)		GRCh37	DELETION	0	32	Deletion within transcript : mid-exon	IMPPRECISE	3to5	B2M (NM_004048) rearrangement: c.21:B2M_chr15:g.45002849del	yes	unknown	916	558	572	0	34
P-0055533-T01-IM6	SOMATIC	B2M		15	15	45006075	45007671	Intron of B2M(+):2Kb before exon 2	Exon 2 of B2M(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	B2M (NM_004048) rearrangement: c.68-1546_c.118del			1596	872	850	0	29
P-0012779-T01-IM5	SOMATIC	B2M	B2M	15	15	45003811	45007620	Exon 1 of B2M(+)	Intron of B2M(+): 1bp before exon 2		GRCh37	DELETION	43	24	Deletion within transcript: mid-exon	PRECISE	3to5	B2M (NM_004048) rearrangement: c.67_c.68-1del	yes	unknown	3809	1820	2267	0	24
P-0029870-T01-IM6	SOMATIC	B2M	TRIM69	15	15	45003923	45037678	Intron of B2M(+):112bp after exon 1	Intron of TRIM69(+):9Kb after exon 1		GRCh37	DELETION	4	3	Protein Fusion: out of frame  {B2M:TRIM69}	PRECISE	3to5	B2M (NM_004048) - TRIM69 (NM_182985) rearrangement: c.67+112:B2M_c.6+8770:TRIM69del	yes	unknown	33755	3445	2937	0	5
P-0011268-T01-IM5	SOMATIC	B2M	TRIM69	15	15	45003743	45044078	5-UTR of B2M(+): 2bp before coding start	Intron of TRIM69(+): 3Kb before exon 2		GRCh37	DELETION	13	5	Transcript fusion (B2M-TRIM69)	PRECISE	3to5	B2M (NM_004048) - TRIM69 (NM_182985) rearrangement: c.-2:B2M_c.7-3020:TRIM69del	yes	unknown	40335	7025	6280	0	5
P-0074332-T01-IM7	SOMATIC	BABAM1	BABAM1	19	19	17377474	17387795	Promoter of BABAM1(+):710bp from tx start	Intron of BABAM1(+):77bp after exon 8		GRCh37	INVERSION	0	7	Antisense Fusion	IMPPRECISE	3to3	BABAM1 (NM_001033549) rearrangement: c.786+77:BABAM1_chr19:g.17377474inv	yes	unknown	10321	8547	14781	0	7
P-0045153-T01-IM6	SOMATIC	BABAM1	BABAM1	19	19	8834399	17382461	IGR: 7Kb before OR2Z1(+)	Exon 3 of BABAM1(+)		GRCh37	INVERSION	10	7	BABAM1-intragenic	PRECISE	3to3	BABAM1 (NM_001033549) rearrangement: c.341:BABAM1_chr19:g.8834399inv	yes	unknown	8548062	369489	485944	0	8
P-0070133-T02-IM7	SOMATIC	BABAM1	LANCL2	19	7	17385067	55401888	Intron of BABAM1(+):73bp after exon 5	IGR: 31Kb before LANCL2(+)		GRCh37	TRANSLOCATION	10	20	BABAM1-intragenic	PRECISE	3to3	BABAM1 (NM_001033549) rearrangement: t(7;19)(p11.2;p13.11)(chr7:g.55401888::chr19:g.17385067)	yes	unknown	0	0	0	0	19
P-0020730-T01-IM6	SOMATIC	BABAM1		19	19	17334216	17384784	Promoter of OCEL1(+):3Kb from tx start	Exon 4 of BABAM1(+)		GRCh37	INVERSION			BABAM1-intragenic	PRECISE	5to5	BABAM1 (NM_001033549) rearrangement: g.17334216_c.416inv			50568	7360	7168	0	7
P-0046454-T01-IM6	SOMATIC	BABAM1		19	19	17385914	17387432	Intron of BABAM1(+):695bp before exon 6	Exon 7 of BABAM1(+)		GRCh37	INVERSION			BABAM1-intragenic	PRECISE	5to5	BABAM1 (NM_001033549) rearrangement: c.545-696_c.698inv			1518	3315	4529	0	23
P-0080981-T01-IM7	SOMATIC	BABAM1		19	19	17379914	17384496	Intron of BABAM1(+):14bp after exon 2	Intron of BABAM1(+):216bp before exon 4		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	BABAM1 (NM_001033549) rearrangement: c.285+14_c.345-217del			4582	967	1170	0	22
P-0067210-T01-IM7	SOMATIC	BABAM1	BABAM1	19	19	17379563	17384863	5-UTR of BABAM1(+):52bp before coding start	Intron of BABAM1(+):30bp after exon 4		GRCh37	DELETION	10	4	Deletion within transcript	PRECISE	3to5	BABAM1 (NM_001033549) rearrangement: c.465+30:BABAM1_chr19:g.17379563del	yes	unknown	5300	4903	4241	0	5
P-0049420-T01-IM6	SOMATIC	BABAM1	UHRF1	19	19	4951357	17389722	Intron of UHRF1(+):349bp after exon 12	Exon 9 of BABAM1(+)		GRCh37	DUPLICATION	10	44	Protein Fusion: mid-exon  {BABAM1:UHRF1}	PRECISE	5to3	BABAM1 (NM_001033549) - UHRF1 (NM_001048201) rearrangement: c.855:BABAM1_c.1818+349:UHRF1dup	yes	unknown	12438365	397667	638610	0	46
P-0087851-T01-IM7	SOMATIC	BACE2	TMPRSS2	21	21	42611906	42860394	Intron of BACE2(+):2Kb before exon 4	Exon 5 of TMPRSS2(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {BACE2:TMPRSS2}	PRECISE	3to3	BACE2 (NM_012105) - TMPRSS2 (NM_001135099) rearrangement: c.619-1840:BACE2_c.483:TMPRSS2inv			248488	12040	13170	0	5
P-0054154-T01-IM6	SOMATIC	BACH1	TMPRSS2	21	21	30702897	42866728	Intron of BACH1(+):883bp after exon 4	Intron of TMPRSS2(-):223bp before exon 3		GRCh37	INVERSION	10	33	Protein Fusion: in frame  {BACH1:TMPRSS2}	PRECISE	3to3	BACH1 (NM_001186) - TMPRSS2 (NM_001135099) rearrangement: c.1776+883:BACH1_c.127-223:TMPRSS2inv	yes	unknown	12163831	78751	100347	0	33
P-0068502-T01-IM7	SOMATIC	BAHCC1	MAP3K14	17	17	43366804	79380798	Intron of MAP3K14(-):133bp before exon 3	Intron of BAHCC1(+):7Kb after exon 1		GRCh37	INVERSION	0	7	Protein Fusion: out of frame  {BAHCC1:MAP3K14}	IMPPRECISE	3to3	BAHCC1 (NM_001080519) - MAP3K14 (NM_003954) rearrangement: c.177+7082:BAHCC1_c.257-133:MAP3K14inv	yes	unknown	36013994	422569	1080456	0	6
P-0048033-T01-IM6	SOMATIC	BAIAP2	RPTOR	17	17	78867455	79062963	Intron of RPTOR(+):51bp before exon 20	Intron of BAIAP2(+):3Kb after exon 6		GRCh37	DUPLICATION	4	2	Protein Fusion: out of frame  {BAIAP2:RPTOR}	PRECISE	5to3	BAIAP2 (NM_017451) - RPTOR (NM_020761) rearrangement: c.489+2583:BAIAP2_c.2243-52:RPTORdup	yes	unknown	195508	26219	30765	0	3
P-0033387-T03-IM7	SOMATIC	BAP1	PBRM1	3	3	52437677	52584507	Exon 13 of BAP1(-)	Exon 29 of PBRM1(-)		GRCh37	INVERSION	10	44	Antisense Fusion	PRECISE	5to5	BAP1 (NM_004656) - PBRM1 (NM_018313) rearrangement: c.1484:BAP1_c.4506:PBRM1inv	yes	unknown	146830	23899	29833	0	46
P-0037164-T02-IM6	SOMATIC	BAP1	BAP1	3	3	52403726	52437465	Intron of DNAH1(+):114bp before exon 38	Exon 13 of BAP1(-)		GRCh37	DELETION	10	33	Antisense Fusion	PRECISE	3to5	BAP1 (NM_004656) rearrangement: c.1696:BAP1_chr3:g.52403726del	yes	unknown	33739	7567	6784	0	77
P-0052970-T01-IM6	SOMATIC	BAP1	BAP1	21	3	41393215	52440189	Intron of DSCAM(-):8Kb before exon 33	Intron of BAP1(-):79bp after exon 9		GRCh37	TRANSLOCATION	0	50	Antisense Fusion	IMPPRECISE	5to5	BAP1 (NM_004656) rearrangement: t(3;21)(p21.1;q22.2)(chr3:g.52440189::chr21:g.41393215)	yes	unknown	0	0	0	0	55
P-0061756-T02-IM7	SOMATIC	BAP1	BAP1	3	3	52409857	52442364	Intron of DNAH1(+):113bp before exon 46	Intron of BAP1(-):125bp after exon 4		GRCh37	DELETION	0	9	Antisense Fusion	IMPPRECISE	3to5	BAP1 (NM_004656) rearrangement: c.255+126:BAP1_chr3:g.52409857del	yes	unknown	32507	28698	18729	0	10
P-0016625-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52435020	52437687	3-UTR of BAP1(-):1Kb after coding stop	Exon 13 of BAP1(-)		GRCh37	DELETION	10	12	BAP1-intragenic	PRECISE	3to5	BAP1 (NM_004656) rearrangement: c.*1284_c.1474del	yes	unknown	2667	6411	10165	0	12
P-0019936-T01-IM6	SOMATIC	BAP1		3	3	52437478	52454975	Exon 13 of BAP1(-)	Exon 7 of PHF7(+)		GRCh37	DELETION			BAP1-intragenic	PRECISE	3to5	BAP1 (NM_004656) rearrangement: c.1683:BAP1_chr3:g.52454975del			17497	22431	21197	0	6
P-0027627-T01-IM6	SOMATIC	BAP1		3	3	52440900	52495299	Exon 8 of BAP1(-)	Intron of NISCH(+):2Kb after exon 3		GRCh37	DELETION			BAP1-intragenic	PRECISE	3to5	BAP1(NM_004656) rearrangement: c.604:BAP1_chr3:g.52495299del			54399	8693	6048	0	5
P-0000260-T01-IM3	SOMATIC	BAP1	PHF7	3	3	52436429	52446090	Exon 17 of BAP1(-)	5-UTR of PHF7(+): 806bp before coding start		GRCh37	DELETION	22	11	PHF7-BAP1 fusion	PRECISE	3to5		yes	unknown	9661	19856	13983	0	9
P-0038793-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52443916	52450490	5-UTR of BAP1(-):8Kb before coding start	Intron of PHF7(+):2Kb after exon 4		GRCh37	DELETION	10	42	PHF7-BAP1 fusion	PRECISE	3to5	BAP1 (NM_004656) -  PHF7 (NM_016483) rearrangement: c.-22:BAP1_c.186+1887:PHF7del	yes	unknown	6574	304	220	0	45
P-0049248-T01-IM6	SOMATIC	BAP1	PBRM1	3	3	52436318	52719537	Exon 17 of BAP1(-)	5-UTR of PBRM1(-):137Kb before coding start		GRCh37	DUPLICATION	10	89	Protein Fusion: mid-exon  {BAP1:PBRM1}	PRECISE	5to3	BAP1 (NM_004656) rearrangement: c.2176:BAP1_chr3:g.52719537dup	yes	unknown	283219	66124	121863	0	90
P-0038518-T04-IM7	SOMATIC	BAP1	PBRM1	3	3	52442631	52624316	Intron of BAP1(-):9bp before exon 4	Intron of PBRM1(-):1Kb before exon 19		GRCh37	DUPLICATION	0	7	Protein Fusion: out of frame  {BAP1:PBRM1}	IMPPRECISE	5to3	BAP1 (NM_004656) - PBRM1 (NM_018313) rearrangement: c.123-9:BAP1_c.2780-1045:PBRM1dup	yes	unknown	181685	17509	40191	0	9
P-0008308-T01-IM5	SOMATIC	BARD1	BARD1	2	2	215657130	215687909	Exon 3 of BARD1(-)	IGR: 13Kb after BARD1(-)		GRCh37	DELETION	20	15	BARD1-intragenic	PRECISE	3to5	BARD1 (NM_000465) rearrangement: chr2:g.215687909_c.255del	yes	unknown	30779	3383	2671	0	15
P-0046841-T01-IM6	SOMATIC	BARD1	BARD1	2	2	180229517	215645616	IGR: 77Kb before ZNF385B(-)	Exon 4 of BARD1(-)		GRCh37	INVERSION	10	60	BARD1-intragenic	PRECISE	3to3	BARD1 (NM_000465) rearrangement: c.982:BARD1_chr2:g.180229517inv	yes	unknown	35416099	112214	284261	0	73
P-0067146-T01-IM7	SOMATIC	BARD1		2	2	200934754	215595136	IGR: 115Kb before C2orf47(+)	Exon 10 of BARD1(-)		GRCh37	DELETION			BARD1-intragenic	PRECISE	3to5	BARD1 (NM_000465) rearrangement: c.2000:BARD1_chr2:g.200934754del			14660382	139055	95351	0	8
P-0060561-T01-IM7	SOMATIC	BARD1	BARD1	2	2	215637709	215645984	Intron of BARD1(-):4Kb before exon 5	Exon 4 of BARD1(-)		GRCh37	DELETION	8	9	Deletion within transcript : mid-exon	PRECISE	3to5	BARD1 (NM_000465) rearrangement: c.614_c.1315-3673del	yes	unknown	8275	3950	3151	0	9
P-0014509-T01-IM6	SOMATIC	BARD1		2	2	215645321	215647929	Exon 4 of BARD1(-)	Intron of BARD1(-): 2Kb before exon 4		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	BARD1 (NM_000465) rearrangement: c.365-1696_c.1277del			2608	6111	5088	0	16
P-0004861-T01-IM5	SOMATIC	BBC3	C2orf63	19	2	47729876	55436488	Exon 2 of BBC3(-)	Intron of C2orf63(-): 52bp after exon 5		GRCh37	TRANSLOCATION	32	39	Antisense fusion	PRECISE	5to5	BBC3 (NM_001127240) - CLHC1 (NM_001135598) rearrangement: t(19;2)(q13;p16.1)(chr19:g.47729876::chr2:g.55436488)	yes	unknown	0	0	0	0	38
P-0065554-T01-IM7	SOMATIC	BBC3	HYAL3	19	3	47730096	50331294	Intron of BBC3(-):85bp before exon 3	Intron of HYAL3(-):348bp before exon 3		GRCh37	TRANSLOCATION	10	19	BBC3-intragenic	PRECISE	3to3	BBC3 (NM_001127240) rearrangement: t(3;19)(p21.31;q13.32)(chr3:g.50331294::chr19:g.47730096)	yes	unknown	0	0	0	0	18
P-0065262-T01-IM7	SOMATIC	BBC3	NOVA2	19	19	46466754	47726856	Intron of NOVA2(-):2Kb before exon 2	Intron of BBC3(-):2Kb before exon 4		GRCh37	DELETION	4	2	Protein Fusion: in frame  {BBC3:NOVA2}	PRECISE	3to5	BBC3 (NM_001127240) - NOVA2 (NM_002516) rearrangement: c.569-1681:BBC3_c.86-2343:NOVA2del	yes	unknown	1260102	39042	28655	0	2
P-0059533-T02-IM7	SOMATIC	BBC3	BBC3	19	19	47551999	47731786	Promoter of NPAS1(+):28Kb from tx start	Intron of BBC3(-):83bp before exon 2		GRCh37	INVERSION	10	143	Transcript Fusion {NPAS1:BBC3}	PRECISE	3to3	BBC3 (NM_001127240) rearrangement: c.89-83:BBC3_chr19:g.47551999inv	yes	unknown	179787	8064	14862	0	143
P-0009480-T01-IM5	SOMATIC	BBS9	IKZF1	7	7	33241908	50467581	Intron of BBS9(+): 25Kb after exon 5	Intron of IKZF1(+): 35bp before exon 8		GRCh37	DELETION	22	19	Protein fusion: in frame (BBS9-IKZF1)	PRECISE	3to5	BBS9 (NM_198428) - IKZF1 (NM_006060) rearrangement: c.442+24705:BBS9_c.855-35:IKZF1del	yes	unknown	17225673	54652	55467	0	18
P-0002841-T01-IM3	SOMATIC	BCAS3	BRIP1	17	17	58855288	59853693	Intron of BCAS3(+): 30Kb before exon 7	Intron of BRIP1(-): 69bp after exon 14		GRCh37	DELETION	41	30	Antisense fusion	PRECISE	3to5		yes	unknown	998405	27195	35883	0	34
P-0066420-T01-IM7	SOMATIC	BCAS3	PPM1D	17	17	58710549	59033550	Intron of PPM1D(+):664bp before exon 3	Intron of BCAS3(+):9Kb after exon 14		GRCh37	DUPLICATION	4	7	Protein Fusion: out of frame  {BCAS3:PPM1D}	PRECISE	5to3	BCAS3 (NM_001099432) - PPM1D (NM_003620) rearrangement: c.1221+8837:BCAS3_c.702-665:PPM1Ddup	yes	unknown	323001	9995	19766	0	7
P-0063217-T01-IM7	SOMATIC	BCL10	LINC02801	1	1	85733342	87671396	Exon 3 of BCL10(-)	IGR: 7Kb before LOC101927844(+)		GRCh37	INVERSION	0	6	BCL10-intragenic	IMPPRECISE	5to5	BCL10 (NM_003921) rearrangement: c.670:BCL10_chr1:g.87671396inv	yes	unknown	1938054	10418	12907	0	6
P-0020670-T01-IM6	SOMATIC	BCL10		1	1	65408657	85733407	5-UTR of JAK1(-):108Kb before coding start	Exon 3 of BCL10(-)		GRCh37	INVERSION			BCL10-intragenic	IMPPRECISE	3to3	BCL10 (NM_003921) rearrangement: g.65408657_c.605inv			20324750	43275	47788	0	11
P-0077073-T02-IM7	SOMATIC	BCL11A	ALK	2	2	29446482	60689552	Intron of ALK(-):88bp before exon 20	Exon 4 of BCL11A(-)		GRCh37	DELETION	10	121	Protein Fusion: mid-exon  {BCL11A:ALK}	PRECISE	3to5	BCL11A (NM_022893) - ALK (NM_004304) fusion: c.495:BCL11A_c.3173-88:ALKdel	yes	unknown	31243070	269133	255015	0	130
P-0014271-T01-IM6	SOMATIC	BCL2		18	18	60985819	76254107	Exon 2 of BCL2(-)	IGR: 486Kb before SALL3(+)		GRCh37	INVERSION			BCL2-intragenic	PRECISE	5to5	BCL2 (NM_000633) rearrangement: c.81:BCL2_chr18:g.76254107inv			15268288	11122	10530	0	27
P-0025947-T01-IM6	SOMATIC	BCL2		18	18	60910289	77261816	Intron of BCL2(-):75Kb after exon 2	Intron of NFATC1(+):15Kb after exon 9		GRCh37	DELETION			BCL2-intragenic	PRECISE	3to5	BCL2 (NM_000633) Rearrangement :  c.585+75026:BCL2_c.2475+15186:NFATC1del			16351527	15192	11425	0	7
P-0073164-T01-IM7	SOMATIC	BCL2L1	LPIN3	20	20	30309790	39981181	Exon 2 of BCL2L1(-)	Intron of LPIN3(+):64bp before exon 10		GRCh37	DUPLICATION	10	33	Antisense Fusion	PRECISE	5to3	BCL2L1 (NM_138578) rearrangement: c.232:BCL2L1_chr20:g.39981181dup	yes	unknown	9671391	202083	224291	0	33
P-0037529-T01-IM6	SOMATIC	BCL2L1	BCL2L1	20	20	30268980	30309648	Intron of BCL2L1(-):15Kb before exon 3	Exon 2 of BCL2L1(-)		GRCh37	INVERSION	10	114	BCL2L1-intragenic	PRECISE	3to3	BCL2L1 (NM_138578) rearrangement: c.374_c.565-15091:inv	yes	unknown	40668	4760	5844	0	114
P-0024865-T01-IM6	SOMATIC	BCL2L1	FSIP1	20	15	30263448	40027488	Intron of BCL2L1(-):10Kb before exon 3	Intron of FSIP1(-):3Kb after exon 8		GRCh37	TRANSLOCATION	10	8	Protein Fusion: in frame  {BCL2L1:FSIP1}	PRECISE	5to3	BCL2L1 (NM_138578) - FSIP1 (NM_152597) rearrangement: t(15;20)(q14;q11.21)(chr15:g.40027488::chr20:g.30263448)	yes	unknown	0	0	0	0	8
P-0061513-T01-IM7	SOMATIC	BCL2L11	GPC1	2	2	111881639	241357404	Exon 2 of BCL2L11(+)	IGR: 18Kb before GPC1(+)		GRCh37	DELETION	10	36	BCL2L11-intragenic	PRECISE	3to5	BCL2L11 (NM_138621) rearrangement: c.317:BCL2L11_chr2:g.241357404del	yes	unknown	129475765	532178	580571	0	38
P-0066179-T01-IM7	SOMATIC	BCL2L11	DPP10	2	2	111881366	115504135	Exon 2 of BCL2L11(+)	Intron of DPP10(+):304Kb after exon 1		GRCh37	INVERSION	10	6	BCL2L11-intragenic	PRECISE	5to5	BCL2L11 (NM_138621) rearrangement: c.44:BCL2L11_chr2:g.115504135inv	yes	unknown	3622769	137436	142444	0	6
P-0065036-T02-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	111886057	111976941	Intron of BCL2L11(+):4Kb after exon 2	IGR: 98Kb before BCL2L11(+)		GRCh37	INVERSION	10	66	BCL2L11-intragenic	PRECISE	5to5	BCL2L11 (NM_138621) rearrangement: c.394+4341:BCL2L11_chr2:g.111976941inv	yes	unknown	90884	13204	9431	0	71
P-0078464-T01-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	85241026	111884051	Intron of KCMF1(+):14Kb before exon 2	Intron of BCL2L11(+):2Kb after exon 2		GRCh37	INVERSION	10	59	BCL2L11-intragenic	PRECISE	5to5	BCL2L11 (NM_138621) rearrangement: c.394+2335:BCL2L11_chr2:g.85241026inv	yes	unknown	26643025	110282	139369	0	69
P-0045847-T01-IM6	SOMATIC	BCL2L14	CDKN1B	12	12	12243490	12871855	Intron of BCL2L14(+):222bp before exon 4	Exon 2 of CDKN1B(+)		GRCh37	DELETION	0	5	Protein Fusion: mid-exon  {BCL2L14:CDKN1B}	IMPPRECISE	3to5	BCL2L14 (NM_138723) - CDKN1B (NM_004064) rearrangement: c.608-223:BCL2L14_c.572:CDKN1Bdel	yes	unknown	628365	3138	3086	0	8
P-0019222-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187437637	187446015	Promoter of BCL6(-):2Kb from tx start	Intron of BCL6(-):132bp after exon 6		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	5to5	BCL6 (NM_001706) rearrangement: c.1540+133_c.*2609inv	yes	unknown	8378	5022	9943	0	13
P-0018453-T01-IM6	SOMATIC	BCL6		3	3	108661942	187443445	Intron of GUCA1C(-):10Kb after exon 1	Intron of BCL6(-):28bp before exon 8		GRCh37	INVERSION			BCL6-intragenic	IMPPRECISE	3to3	BCL6 (NM_001706) rearrangement : g.108661942_c.1709-28:BCL6inv			78781503	319284	412167	0	17
P-0030086-T01-IM6	SOMATIC	BCL6		15	3	70798609	187447670	IGR: 109Kb before SALRNA3(+)	Exon 5 of BCL6(-)		GRCh37	TRANSLOCATION			BCL6-intragenic	PRECISE	5to3	BCL6 (NM_001706) rearrangement: t(3;15)(q27.3;q23)(chr3:g.187447670::chr15:g.70798609)			0	0	0	0	110
P-0046178-T03-IM6	SOMATIC	BCL6		3	3	27791931	187447757	IGR: 34Kb before EOMES(-)	Exon 5 of BCL6(-)		GRCh37	INVERSION			BCL6-intragenic	PRECISE	5to5	BCL6 (NM_001706) rearrangement: c.436:BCL6_chr3:g.27791931inv			159655826	796346	619683	0	29
P-0053849-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187447856	187461323	Intron of BCL6(-):47bp before exon 5	5-UTR of BCL6(-):21Kb before coding start		GRCh37	DELETION	10	15	Deletion within transcript	PRECISE	3to5	BCL6 (NM_001706) rearrangement: c.384-47:BCL6_chr3:g.187461323del	yes	unknown	13467	3204	3565	0	15
P-0029798-T01-IM6	SOMATIC	BCL6		3	3	168207075	187440303	5-UTR of EGFEM1P(+):341Kb before coding start	Exon 10 of BCL6(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {EGFEM1P:BCL6}	PRECISE	3to3	BCL6 (NM_001706) rearrangement: c.2064_chr3:g.168207075inv			19233228	94934	157729	0	36
P-0028195-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39934175	39940737	Exon 4 of BCOR(-)	5-UTR of BCOR(-):29Kb before coding start		GRCh37	INVERSION	10	12	BCOR-intragenic	PRECISE	3to3	BCOR (NM_001123385) rearrangement: c.-40-3515_c.424inv	yes	unknown	6562	2387	3891	0	12
P-0038803-T01-IM6	SOMATIC	BCOR	BCOR	X	X	14000773	39923607	IGR: 24Kb before GEMIN8(-)	Exon 7 of BCOR(-)		GRCh37	DUPLICATION	10	9	BCOR-intragenic	PRECISE	5to3	BCOR (NM_001123385) rearrangement: chrX:g.14000773_c.3484dup	yes	unknown	25922834	26150	49697	0	11
P-0025139-T01-IM6	SOMATIC	BCOR		X	X	8440800	39933492	IGR: 8Kb before VCX3B(+)	Exon 4 of BCOR(-)		GRCh37	DELETION			BCOR-intragenic	PRECISE	3to5	BCOR (NM_001123385) rearrangement: c.1107:BCOR_chrX:g.8440800del			31492692	36359	83152	0	3
P-0029178-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39932566	39947803	Exon 4 of BCOR(-)	5-UTR of BCOR(-):36Kb before coding start		GRCh37	DELETION	10	205	Deletion within transcript : mid-exon	PRECISE	3to5	BCOR (NM_001123385) rearrangement: c.2033:BCOR_chrX:g.39947803del	yes	unknown	15237	11086	15057	0	225
P-0052564-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39911428	39924763	Exon 15 of BCOR(-)	Intron of BCOR(-):911bp before exon 7		GRCh37	DELETION	8	5	Deletion within transcript : mid-exon	PRECISE	3to5	BCOR (NM_001123385) rearrangement: c.3239-911_c.5202del	yes	unknown	13335	21041	31345	0	5
P-0062530-T01-IM7	SOMATIC	BCR	MYC	22	8	23623147	128753046	Intron of BCR(+):3Kb before exon 9	Exon 3 of MYC(+)		GRCh37	TRANSLOCATION	10	36	Protein Fusion: mid-exon  {BCR:MYC}	PRECISE	3to5	BCR (NM_004327) - MYC (NM_002467) rearrangement: t(8;22)(q24.21;q11.23)(chr8:g.128753046::chr22:g.23623147)	yes	unknown	0	0	0	0	38
P-0050023-T02-IM6	SOMATIC	BIRC3		11	11	102198874	102343633	Intron of BIRC3(+):13bp after exon 5	IGR: 48Kb before MMP7(-)		GRCh37	DELETION			BIRC3-intragenic	PRECISE	3to5	BIRC3 (NM_182962) rearrangement: c.1032+13:BIRC3_chr11:g.102343633del			144759	9004	2732	0	4
P-0063282-T01-IM7	SOMATIC	BIRC3		11	11	68892322	102196258	IGR: 22Kb before LOC338694(-)	Exon 4 of BIRC3(+)		GRCh37	DELETION			BIRC3-intragenic	PRECISE	3to5	BIRC3 (NM_182962) rearrangement: c.915:BIRC3_chr11:g.68892322del			33303936	436653	462102	0	24
P-0069406-T01-IM7	SOMATIC	BIRC3	BIRC3	11	11	102196001	102197321	Exon 3 of BIRC3(+)	Intron of BIRC3(+):1Kb after exon 4		GRCh37	DUPLICATION	10	2	Duplication within transcript : mid-exon	PRECISE	5to3	BIRC3 (NM_182962) rearrangement: c.761_c.953+1025dup	yes	unknown	1320	1871	1636	0	2
P-0059769-T01-IM7	SOMATIC	BLM	SPATA8	15	15	91290704	97576342	Exon 2 of BLM(+)	IGR: 250Kb before SPATA8(+)		GRCh37	INVERSION	0	5	BLM-intragenic	IMPPRECISE	5to5	BLM (NM_000057) rearrangement: c.82:BLM_chr15:g.97576342inv	yes	unknown	6285638	47412	34257	0	5
P-0041459-T01-IM6	SOMATIC	BLM	BLM	15	15	83638536	91292729	IGR: 16Kb before FAM103A1(+)	Exon 3 of BLM(+)		GRCh37	DELETION	10	12	BLM-intragenic	PRECISE	3to5	BLM (NM_000057) rearrangement: c.231:BLM_chr15:g.83638536del	yes	unknown	7654193	46599	45920	0	12
P-0035591-T01-IM6	SOMATIC	BLM		15	15	91358499	93055709	Exon 22 of BLM(+)	IGR: 41Kb before C15orf32(+)		GRCh37	INVERSION			BLM-intragenic	PRECISE	3to3	BLM (NM_000057) rearrangement: c.4244:BLM_chr15:g.93055709inv			1697210	1065	728	0	20
P-0050573-T02-IM7	SOMATIC	BLM		15	8	91354475	129297841	Exon 21 of BLM(+)	IGR: 120Kb before LINC00824(-)		GRCh37	TRANSLOCATION			BLM-intragenic	PRECISE	3to5	BLM (NM_000057) rearrangement: t(8;15)(q24.21;q26.1)(chr8:g.129297841::chr15:g.91354475)			0	0	0	0	37
P-0001290-T01-IM3	SOMATIC	BLM	BLM	15	15	91301073	91304368	Intron of BLM(+): 2Kb before exon 6	Exon 7 of BLM(+)		GRCh37	DELETION	33	23	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	3295	8560	7541	0	26
P-0018109-T01-IM6	SOMATIC	BLM	ANKLE2	15	12	91358467	133320386	Exon 22 of BLM(+)	Intron of ANKLE2(-):524bp before exon 6		GRCh37	TRANSLOCATION	0	29	Protein Fusion: mid-exon  {BLM:ANKLE2}	IMPPRECISE	3to3	BLM (NM_000057) - ANKLE2 (NM_015114) rearrangement: t(12;15)(q24.33;q26.1)(chr12:g.133320386::chr15:g.91358467)	yes	unknown	0	0	0	0	28
P-0068323-T01-IM7	SOMATIC	BLM	PDXDC1	16	15	15089602	91352351	Intron of PDXDC1(+):2Kb before exon 2	Intron of BLM(+):15bp before exon 20		GRCh37	TRANSLOCATION	10	13	Protein Fusion: out of frame  {BLM:PDXDC1}	PRECISE	5to3	BLM (NM_000057) - PDXDC1 (NM_015027) rearrangement: t(15;16)(q26.1;p13.11)(chr15:g.91352351::chr16:g.15089602)	yes	unknown	0	0	0	0	15
P-0075182-T01-IM7	SOMATIC	BMPER	MSH3	7	5	33977882	79952079	Intron of BMPER(+):882bp after exon 4	Intron of MSH3(+):150bp before exon 2		GRCh37	TRANSLOCATION	10	11	Protein Fusion: out of frame  {BMPER:MSH3}	PRECISE	3to5	BMPER (NM_133468) - MSH3 (NM_002439) rearrangement: t(5;7)(q14.1;p14.3)(chr5:g.79952079::chr7:g.33977882)	yes	unknown	0	0	0	0	11
P-0062264-T01-IM7	SOMATIC	BMPR1A	NKAIN2	10	6	88676914	124146206	Exon 9 of BMPR1A(+)	Intron of NKAIN2(+):21Kb after exon 1		GRCh37	TRANSLOCATION	10	28	Antisense Fusion	PRECISE	3to3	BMPR1A (NM_004329) rearrangement: t(6;10)(q22.31;q23.2)(chr6:g.124146206::chr10:g.88676914)	yes	unknown	0	0	0	0	28
P-0088589-T01-IM7	SOMATIC	BMPR1A		10	10	88672351	88704036	Intron of BMPR1A(+):210bp after exon 8	Exon 5 of MMRN2(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	BMPR1A (NM_004329) rearrangement: c.675+210:BMPR1A_chr10:g.88704036del			31685	3972	4611	0	5
P-0059009-T02-IM7	SOMATIC	BMPR1A	BMPR1A	15	10	57827984	88679164	Intron of CGNL1(+):4Kb after exon 15	Exon 10 of BMPR1A(+)		GRCh37	TRANSLOCATION	10	23	BMPR1A-intragenic	PRECISE	5to5	BMPR1A (NM_004329) rearrangement: t(10;15)(q23.2;q21.3)(chr10:g.88679164::chr15:g.57827984)	yes	unknown	0	0	0	0	26
P-0024640-T01-IM6	SOMATIC	BMPR1A		10	10	88017504	88683402	Intron of GRID1(-):51Kb before exon 3	Exon 13 of BMPR1A(+)		GRCh37	DELETION			BMPR1A-intragenic	PRECISE	3to5	BMPR1A (NM_004329) rearrangement: chr10:g.88017504_c.1525:BMPR1Adel			665898	20269	19795	0	45
P-0002778-T01-IM3	SOMATIC	BMPR1B	TET2	4	4	96025687	106156370	Exon 4 of BMPR1B(+)	Exon 3 of TET2(+)		GRCh37	INVERSION	40	19	TET2-BMPR1B fusion	PRECISE	5to5		yes	unknown	10130683	23692	28487	0	9
P-0054784-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140478483	140486593	Intron of BRAF(-):608bp before exon 12	Intron of BRAF(-):754bp after exon 9		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	5to5	BRAF (NM_004333) rearrangement: c.1177+755_c.1433-608inv	yes	unknown	8110	40184	41223	0	14
P-0076405-T01-IM7	SOMATIC	BRAF	BRAF	7	7	131030534	140497023	Intron of MKLN1(+):18Kb after exon 1	Intron of BRAF(-):3Kb before exon 8		GRCh37	DELETION	3	2	Antisense Fusion	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.981-2756:BRAF_chr7:g.131030534del	yes	unknown	9466489	89110	39198	0	2
P-0076722-T01-IM7	SOMATIC	BRAF	BRAF	7	7	139609385	140483583	Intron of TBXAS1(+):2Kb before exon 8	Intron of BRAF(-):626bp before exon 10		GRCh37	DELETION	10	79	Antisense Fusion	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1178-626:BRAF_chr7:g.139609385del	yes	unknown	874198	29172	29985	0	83
P-0048727-T01-IM6	SOMATIC	BRAF		7	7	111854942	140493154	Intron of ZNF277(+):8Kb after exon 1	Intron of BRAF(-):953bp after exon 8		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1140+954:BRAF_chr7:g.111854942del			28638212	164437	191906	0	39
P-0062729-T02-IM7	SOMATIC	BRAF		11	7	124656623	140487966	Intron of MSANTD2(-):12Kb before exon 2	Intron of BRAF(-):582bp before exon 9		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	BRAF (NM_004333) rearrangement: t(7;11)(q34;q24.2)(chr7:g.140487966::chr11:g.124656623)			0	0	0	0	33
P-0071510-T01-IM7	SOMATIC	BRAF		7	7	89875268	140486704	Intron of CFAP69(+):410bp after exon 1	Intron of BRAF(-):643bp after exon 9		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1177+644:BRAF_chr7:g.89875268del			50611436	296775	379974	0	11
P-0015711-T01-IM6	SOMATIC	BRAF	CAPZA2	7	7	116511653	140495400	Intron of CAPZA2(+): 9Kb after exon 1	Intron of BRAF(-): 1Kb before exon 8		GRCh37	DUPLICATION			BRAF-CAPZA2 Fusion	PRECISE	5to3	BRAF (NM_004333) - CAPZA2 (NM_006136) rearrangement:  c.981-1133:BRAF_c.39+8949:CAPZA2dup			23983747	209304	238664	0	37
P-0030462-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140429032	140486310	IGR: 5Kb before BRAF(-)	Intron of BRAF(-):1Kb after exon 9		GRCh37	DUPLICATION	10	116	BRAF-intragenic	PRECISE	5to3	BRAF (NM_004333) rearrangement: chr7:g.140429032_c.1177+1038dup	yes	unknown	57278	51102	92947	0	123
P-0051840-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140486189	140487894	Intron of BRAF(-):1Kb after exon 9	Intron of BRAF(-):510bp before exon 9		GRCh37	INVERSION	10	2	BRAF-intragenic	PRECISE	3to3	BRAF (NM_004333) rearrangement: c.1141-510_c.1177+1159inv	yes	unknown	1705	8419	21310	0	1
P-0051087-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140490145	140505548	Intron of BRAF(-):3Kb before exon 9	Intron of BRAF(-):2Kb after exon 5		GRCh37	INVERSION	7	5	BRAF-intragenic	PRECISE	3to3	BRAF (NM_004333) rearrangement: c.711+2212_c.1141-2761inv	yes	unknown	15403	51966	73622	0	5
P-0073365-T02-IM7	SOMATIC	BRAF	BRAF	7	7	140429025	140486217	IGR: 5Kb before BRAF(-)	Intron of BRAF(-):1Kb after exon 9		GRCh37	DUPLICATION	10	6	BRAF-intragenic	PRECISE	5to3	BRAF (NM_004333) rearrangement: c.1177+1131:BRAF_chr7:g.140429025dup	yes	unknown	57192	23228	19145	0	6
P-0012710-T01-IM5	SOMATIC	BRAF		7	2	140492711	121434276	Intron of BRAF(-): 1Kb after exon 8	IGR: 121Kb before GLI2(+)		GRCh37	TRANSLOCATION			BRAF-intragenic	PRECISE	3to3	BRAF (NM_004333) rearrangement : t(2;7)(7q34;5q21.3)(chr2:121434276::chr7:140492711)			0	0	0	0	36
P-0026050-T01-IM6	SOMATIC	BRAF		7	7	140494164	145389205	Exon 8 of BRAF(-)	IGR: 424Kb before CNTNAP2(+)		GRCh37	DELETION			BRAF-intragenic	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1084:BRAF_chr7:g.145389205del			4895041	66841	115829	0	17
P-0029059-T01-IM6	SOMATIC	BRAF		7	7	130724897	140484116	3-UTR of LINC-PINT(-):67Kb after coding stop	Intron of BRAF(-):1Kb before exon 10		GRCh37	DELETION			BRAF-intragenic	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1178-1159:BRAF_chr7:g.130724897del			9759219	26855	35411	0	78
P-0030303-T01-IM6	SOMATIC	BRAF		7	7	140487445	142397017	Intron of BRAF(-):61bp before exon 9	IGR: 23Kb before MTRNR2L6(+)		GRCh37	INVERSION			BRAF-intragenic	IMPPRECISE	3to3	BRAF (NM_004333) rearrangement: c.1141-61:BRAF_chr9:g.142397017inv			1909572	92603	100142	0	6
P-0042036-T01-IM6	SOMATIC	BRAF		7	7	114530920	140482248	IGR: 31Kb before MDFIC(+)	Intron of BRAF(-):572bp after exon 10		GRCh37	DELETION			BRAF-intragenic	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1314+573:BRAF_chr7:g.114530920del			25951328	140119	78111	0	10
P-0047637-T01-IM6	SOMATIC	BRAF		7	7	140501219	142196577	Exon 6 of BRAF(-)	IGR: 178Kb before MTRNR2L6(+)		GRCh37	INVERSION			BRAF-intragenic	PRECISE	5to5	BRAF (NM_004333) rearrangement: c.853:BRAF_chr7:g.142196577inv			1695358	5419	10593	0	28
P-0052432-T01-IM6	SOMATIC	BRAF		7	7	136669285	140487885	3-UTR of LOC349160(-):180Kb after coding stop	Intron of BRAF(-):501bp before exon 9		GRCh37	DUPLICATION			BRAF-intragenic	PRECISE	5to3	BRAF (NM_004333) rearrangement: c.1141-501:BRAF_chr7:g.136669285dup			3818600	52028	46892	0	40
P-0068842-T01-IM7	SOMATIC	BRAF		7	7	140423756	140485646	IGR: 10Kb before BRAF(-)	Intron of BRAF(-):2Kb after exon 9		GRCh37	DUPLICATION			BRAF-intragenic	PRECISE	5to3	BRAF (NM_004333) rearrangement: c.1177+1702:BRAF_chr7:g.140423756dup			61890	28452	16387	0	25
P-0078911-T01-IM7	SOMATIC	BRAF		7	7	138111637	140492122	IGR: 33Kb before TRIM24(+)	Intron of BRAF(-):2Kb after exon 8		GRCh37	DUPLICATION			BRAF-intragenic	PRECISE	5to3	BRAF (NM_004333) rearrangement: c.1140+1986:BRAF_chr7:g.138111637dup			2380485	59446	133454	0	88
P-0060661-T01-IM7	SOMATIC	BRAF									GRCh37				BRAF-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: BRAF (NM_00433) deletion of exons 8 thru 15.	yes	unknown					
P-0053983-T01-IM6	SOMATIC	BRAF									GRCh37				BRAF-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   BRAF (NM_004333) deletion of exons 2-10.	yes	unknown					
P-0011111-T01-IM5	SOMATIC	BRAF	JHDM1D	7	7	139789222	140484788	3-UTR of JHDM1D(-): 2Kb after coding stop	Intron of BRAF(-): 2Kb before exon 10		GRCh37	DELETION			BRAF-JHDM1D Fusion	PRECISE	3to5	BRAF (NM_004333) - JHDM1D (NM_030647) rearrangement: c.1178-1831:BRAF_c.*1672:JHDM1Ddel			695566	17272	18154	0	7
P-0072140-T01-IM7	SOMATIC	BRAF		7	7	140441540	140449827	Intron of BRAF(-):2Kb before exon 17	Intron of BRAF(-):609bp before exon 16		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1861-609_c.1993-1794del			8287	1297	173	0	15
P-0064051-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140482170	140531641	Intron of BRAF(-):650bp after exon 10	Intron of BRAF(-):3Kb after exon 3		GRCh37	DELETION	10	5	Deletion of 7 exons : in frame	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.504+2768_c.1314+651del	yes	unknown	49471	91273	97682	0	5
P-0004140-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140488357	140551109	Intron of BRAF(-): 973bp before exon 9	Intron of BRAF(-): 1Kb before exon 2		GRCh37	DELETION	39	38	Deletion of 7 exons: in frame	PRECISE	3to5	BRAF(NM_004333) Rearrangement : c.1141-973_139-1097del	yes	unknown	62752	93829	96140	0	39
P-0016911-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140482518	140542217	Intron of BRAF(-):302bp after exon 10	Intron of BRAF(-):8Kb before exon 3		GRCh37	DELETION	10	63	Deletion of 8 exons : in frame	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.1314+303_c.241-7545del	yes	unknown	59699	101162	240819	0	68
P-0060661-T01-IM7	SOMATIC	BRAF		7	7	140450590	140494789	Intron of BRAF(-):1Kb before exon 16	Intron of BRAF(-):522bp before exon 8		GRCh37	DELETION			Deletion of 8 exons : out of frame	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.981-522_c.1861-1372del			44199	46250	111514	0	13
P-0011370-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140482611	140546815	Intron of BRAF(-): 210bp after exon 10	Intron of BRAF(-): 3Kb after exon 2		GRCh37	DELETION	58	77	Deletion of 8 exons: in frame	PRECISE	3to5	BRAF (NM_004333) Rearrangement :  c.240+3096_c.1314+210del	yes	unknown	64204	179793	109143	0	74
P-0008098-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140482187	140567810	Intron of BRAF(-): 634bp after exon 10	Intron of BRAF(-): 18Kb before exon 2		GRCh37	DELETION	106	102	Deletion of 9 exons: in frame	PRECISE	3to5	BRAF (NM_004333) rearrangement : c.139-17798_1314+634del	yes	unknown	85623	198635	107954	0	205
P-0081157-T01-IM7	SOMATIC	BRAF		7	7	140497636	140499508	Intron of BRAF(-):3Kb after exon 7	Intron of BRAF(-):653bp after exon 7		GRCh37	DELETION			Deletion within intron	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.980+654_c.980+2526del			1872	3750	5538	0	45
P-0053983-T01-IM6	SOMATIC	BRAF		7	7	140482850	140587430	Exon 10 of BRAF(-)	Intron of BRAF(-):37Kb after exon 1		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	BRAF (NM_004333) rearrangement: c.138+36936_c.1285del			104580	84992	95637	0	4
P-0022282-T01-IM6	SOMATIC	BRAF	GPM6A	7	4	140454168	176630702	Intron of BRAF(-):135bp before exon 14	Intron of GPM6A(-):8Kb before exon 3		GRCh37	TRANSLOCATION	10	10	GPM6A-BRAF fusion	PRECISE	3to3	BRAF (NM_004333) - GPM6A (NM_005277) rearrangement: t(4;7)(q34.2;q34)(chr4:g.176630702::chr7:g.140454168)	yes	unknown	0	0	0	0	10
P-0021519-T02-IM6	SOMATIC	BRAF	AGAP3	7	7	140493112	150825913	Intron of BRAF(-):995bp after exon 8	Intron of AGAP3(+):142bp after exon 10		GRCh37	INVERSION	10	63	Protein Fusion: in frame  {AGAP3:BRAF}	PRECISE	3to3	AGAP3 (NM_031946) - BRAF (NM_004333) Rearrangement : c.1326+142:AGAP3_c.1140+996:BRAFinv	yes	unknown	10332801	95033	111089	0	60
P-0064764-T01-IM7	SOMATIC	BRAF	SND1	7	7	127357391	140493289	Intron of SND1(+):4Kb before exon 10	Intron of BRAF(-):818bp after exon 8		GRCh37	INVERSION	10	13	Protein Fusion: in frame  {BRAF:SND1}	PRECISE	5to5	BRAF (NM_004333) - SND1 (NM_014390) fusion: c.1140+819:BRAF_c.1039-3950:SND1inv	yes	unknown	13135898	136365	100857	0	13
P-0036870-T01-IM6	SOMATIC	BRAF	PRIM2	7	6	140493232	57410815	Intron of BRAF(-):875bp after exon 8	Intron of PRIM2(+):12Kb after exon 10		GRCh37	TRANSLOCATION	10	13	Protein Fusion: in frame  {PRIM2:BRAF}	PRECISE	3to3	PRIM2 (NM_000947) - BRAF (NM_004333) Rearrangement : t(6;7)(p11.1;q34)(chr6:g.57410815::chr7:g.140493232)	yes	unknown	0	0	0	0	13
P-0007861-T01-IM5	SOMATIC	BRAF	AGAP3	7	7	140490697	150825991	Intron of BRAF(-): 3Kb before exon 9	Intron of AGAP3(+): 220bp after exon 10		GRCh37	INVERSION	8	3	Protein fusion: in frame (AGAP3-BRAF)	PRECISE	3to3	AGAP3 (NM_031946) - BRAF (NM_004333) rearrangement: c.1326+220:AGAP3_c.1141-3313:BRAFinv	yes	unknown	10335294	117013	133074	0	3
P-0009757-T01-IM5	SOMATIC	BRAF	AGAP3	7	7	140493871	150823513	Intron of BRAF(-): 237bp after exon 8	Intron of AGAP3(+): 2Kb before exon 10		GRCh37	INVERSION	30	40	Protein fusion: in frame (AGAP3-BRAF)	PRECISE	3to3	AGAP3 (NM_031946) - BRAF (NM_004333) rearrangement: c.1222-2154:AGAP3_c.1140+237:BRAFinv	yes	unknown	10329642	107911	131871	0	37
P-0000913-T02-IM5	SOMATIC	BRAF	AGK	7	7	140496386	141269299	Intron of BRAF(-): 2Kb before exon 8	Intron of AGK(+): 14Kb after exon 2		GRCh37	INVERSION	59	57	Protein fusion: in frame (AGK-BRAF)	PRECISE	3to3	AGK (NM_018238) - BRAF (NM_004333) Fusion (AGK exon 2   fused with BRAF exon 8) : c.101+13932:AGK _c.981-2119:BRAFinv	yes	unknown	772913	51437	52770	0	77
P-0004477-T01-IM5	SOMATIC	BRAF	AGK	7	7	140495405	141265443	Intron of BRAF(-): 1Kb before exon 8	Intron of AGK(+): 10Kb after exon 2		GRCh37	INVERSION	12	11	Protein fusion: in frame (AGK-BRAF)	PRECISE	3to3	AGK (NM_018238) - BRAF (NM_004333) fusion ( AGK exons 1 to 2 and  BRAF exons 8 to 18): c.101+10076:AGK_c.981-1138:BRAFinv	yes	unknown	770038	34782	46087	0	11
P-0010945-T01-IM5	SOMATIC	BRAF	AGK	7	7	140497610	141268013	Intron of BRAF(-): 3Kb after exon 7	Intron of AGK(+): 13Kb after exon 2		GRCh37	INVERSION	12	11	Protein fusion: in frame (AGK-BRAF)	PRECISE	3to3	AGK (NM_018238) - BRAF (NM_004333) rearrangement :  c.101+12646:AGK_c.980+2552:BRAFinv	yes	unknown	770403	28761	30557	0	11
P-0003502-T01-IM5	SOMATIC	BRAF	PJA2	7	5	140482379	108688305	Intron of BRAF(-): 442bp after exon 10	Intron of PJA2(-): 3Kb after exon 7		GRCh37	TRANSLOCATION	6	6	Protein fusion: in frame (BRAF-PJA2)	PRECISE	5to3		yes	unknown	0	0	0	0	9
P-0004795-T01-IM5	SOMATIC	BRAF	CUL1	7	7	140493811	148463226	Intron of BRAF(-): 297bp after exon 8	Intron of CUL1(+): 427bp before exon 8		GRCh37	INVERSION	20	15	Protein fusion: in frame (CUL1-BRAF)	PRECISE	3to3	CUL1(NM_003592) - BRAF (NM_004333) Rearrangement :c.790-427:CUL1_c.1140+297:BRAFinv	yes	unknown	7969415	51573	47940	0	15
P-0010494-T01-IM5	SOMATIC	BRAF	GIPC2	7	1	140487276	78571528	Intron of BRAF(-): 72bp after exon 9	Intron of GIPC2(+): 11Kb after exon 3		GRCh37	TRANSLOCATION	43	100	Protein fusion: in frame (GIPC2-BRAF)	PRECISE	3to3	GIPC2 (NM_017655) -BRAF (NM_004333)  Rearrangement :  t(1;7)(p31.1;q34)(chr1:g.78571528::chr7:g.140487276)	yes	unknown	0	0	0	0	97
P-0061935-T01-IM7	SOMATIC	BRAF		7	1	140491567	205641409	Intron of BRAF(-):3Kb after exon 8	5-UTR of SLC45A3(-):13Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {BRAF:SLC45A3}	PRECISE	5to3	BRAF (NM_004333) rearrangement: t(1;7)(q32.1;q34)(chr1:g.205641409::chr7:g.140491567)			0	0	0	0	29
P-0073868-T01-IM7	SOMATIC	BRAF	SLC45A3	7	1	140493846	205634150	Intron of BRAF(-):261bp after exon 8	5-UTR of SLC45A3(-):6Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {SLC45A3:BRAF}	PRECISE	3to5	BRAF (NM_004333) - SLC45A3 (NM_033102) rearrangement: t(1;7)(q32.1;q34)(chr1:g.205634150::chr7:g.140493846)			0	0	0	0	64
P-0002516-T01-IM3	SOMATIC	BRAF	VIPR2	7	7	140454067	158918228	Intron of BRAF(-): 34bp before exon 14	Intron of VIPR2(-): 16Kb before exon 3		GRCh37	INVERSION	77	40	VIPR2-BRAF fusion	PRECISE	3to3		yes	unknown	18464161	530171	413638	0	39
P-0019855-T01-IM6	SOMATIC	BRCA1	ANKFN1	17	17	41222945	54465978	Exon 15 of BRCA1(-)	Intron of ANKFN1(+):14Kb after exon 7		GRCh37	DUPLICATION			Antisense Fusion	PRECISE	5to3	BRCA1 (NM_007294) - ANKFN1 (NM_153228) rearrangement: c.4986:BRCA2_c.919+13903:ANKFN1dup			13243033	126116	164482	0	99
P-0030893-T01-IM6	SOMATIC	BRCA1	CACNA2D4	17	12	41244044	1952789	Exon 10 of BRCA1(-)	Intron of CACNA2D4(-):778bp after exon 25		GRCh37	TRANSLOCATION	10	44	Antisense Fusion	PRECISE	5to5	BRCA1 (NM_007294) Rearrangement : t(12,17)(p13.32,q21.31)(chr12:g.1952789::chr17:g.41244044)	yes	unknown	0	0	0	0	57
P-0047340-T01-IM6	SOMATIC	BRCA1	DHX8	17	17	41246430	41567534	Exon 10 of BRCA1(-)	Intron of DHX8(+):224bp before exon 3		GRCh37	DUPLICATION	9	18	Antisense Fusion	PRECISE	5to3	BRCA1 (NM_007294) rearrangement: c.1118:BRCA1_chr17:g.41567534dup	yes	unknown	321104	13451	15880	0	18
P-0073867-T01-IM7	SOMATIC	BRCA1	BRCA1	17	17	41242880	41256674	Intron of BRCA1(-):80bp after exon 11	Intron of BRCA1(-):210bp after exon 5		GRCh37	INVERSION	10	3	Antisense Fusion	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: c.301+211_c.4185+81inv	yes	unknown	13794	18006	25057	0	5
P-0051869-T01-IM6	SOMATIC	BRCA1		17	17	34848856	41215878	Intron of ZNHIT3(+):113bp after exon 3	Intron of BRCA1(-):12bp after exon 17		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.5152+13:BRCA1_chr17:g.34848856del			6367022	243855	184554	0	17
P-0066907-T01-IM7	SOMATIC	BRCA1		17	17	41267017	41277936	Intron of BRCA1(-):725bp after exon 3	Promoter of BRCA1(-):82Kb from tx start		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: c.134+726:BRCA1_chr17:g.41277936inv			10919	3667	2473	0	8
P-0025479-T01-IM6	SOMATIC	BRCA1	MIR6085	17	15	41223156	62705905	Exon 15 of BRCA1(-)	IGR: 71Kb before MIR6085(+)		GRCh37	TRANSLOCATION	10	26	BRCA1-intragenic	PRECISE	5to3	BRCA1 (NM_007294) rearrangement: t(15;17)(q22.2;q21.31)(chr15:g.62705905::chr17:g.41223156)	yes	unknown	0	0	0	0	26
P-0023102-T01-IM6	SOMATIC	BRCA1		17	17	39859920	41243562	IGR: 9Kb before GAST(+)	Exon 10 of BRCA1(-)		GRCh37	INVERSION			BRCA1-intragenic	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: chr17:g.39859920_c.3986inv			1383642	162626	153414	0	4
P-0027081-T01-IM6	SOMATIC	BRCA1		17	17	41243972	41287037	Exon 10 of BRCA1(-)	5-UTR of NBR2(+):10Kb before coding start		GRCh37	DELETION			BRCA1-intragenic	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.3576_chr17:g.41287037del			43065	22723	18664	0	19
P-0032156-T01-IM6	SOMATIC	BRCA1		17	16	41197718	28960444	Exon 23 of BRCA1(-)	Promoter of NFATC2IP(+):2Kb from tx start		GRCh37	TRANSLOCATION			BRCA1-intragenic	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: t(16;17)(p11.2;q21.32)(chr16:g.28960444::chr17:g.41197718)			0	0	0	0	26
P-0036553-T01-IM6	SOMATIC	BRCA1		17	17	37741308	41246018	IGR: 19Kb before NEUROD2(-)	Exon 10 of BRCA1(-)		GRCh37	INVERSION			BRCA1-intragenic	IMPPRECISE	5to5	BRCA1 (NM_007294) rearrangement: c.1530:BRCA1_chr17:g.37741308inv			3504710	207782	437720	0	18
P-0043583-T01-IM6	SOMATIC	BRCA1		17	17	41246912	42410005	Intron of BRCA1(-):35bp before exon 10	IGR: 12Kb before GRN(+)		GRCh37	DELETION			BRCA1-intragenic	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.671-35:BRCA1_chr17:g.42410005del			1163093	6717	21119	0	67
P-0046560-T01-IM6	SOMATIC	BRCA1		21	17	16934905	41199659	IGR: 167Kb before USP25(+)	Exon 22 of BRCA1(-)		GRCh37	TRANSLOCATION			BRCA1-intragenic	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: t(17;21)(q21.31;q21.1)(chr17:g.41199659::chr21:g.16934905)			0	0	0	0	48
P-0086643-T01-IM7	SOMATIC	BRCA1		17	17	40320229	41243327	Intron of KCNH4(-):1Kb after exon 9	Intron of BRCA1(-):124bp after exon 10		GRCh37	INVERSION			BRCA1-intragenic	IMPPRECISE	3to3	BRCA1 (NM_007294) rearrangement: c.4096+125:BRCA1_chr17:g.40320229inv			923098	107347	224655	0	19
P-0022746-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41247738	41249220	Intron of BRCA1(-):124bp after exon 9	Intron of BRCA1(-):40bp after exon 8		GRCh37	DELETION	9	2	Deletion of 1 exon : out of frame	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.593+41_c.670+125del	yes	unknown	1482	1528	958	0	2
P-0030749-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41225142	41247758	Intron of BRCA1(-):1Kb after exon 14	Intron of BRCA1(-):104bp after exon 9		GRCh37	DELETION	10	28	Deletion of 5 exons : in frame	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.670+105_c.4675+1206del	yes	unknown	22616	23741	15154	0	29
P-0043150-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41221747	41249124	Intron of BRCA1(-):1Kb after exon 15	Intron of BRCA1(-):136bp after exon 8		GRCh37	DELETION	10	55	Deletion of 7 exons : out of frame	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.593+137_c.4986+1198del	yes	unknown	27377	39780	20651	0	58
P-0030943-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41246822	41279040	Exon 10 of BRCA1(-)	Promoter of BRCA1(-):83Kb from tx start		GRCh37	DELETION	10	50	Deletion within transcript : mid-exon	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.-1772_c.726del	yes	unknown	32218	12279	14253	0	51
P-0069750-T01-IM7	SOMATIC	BRCA1	BRCA1	17	17	41245225	41247296	Exon 10 of BRCA1(-)	Intron of BRCA1(-):419bp before exon 10		GRCh37	DELETION	5	3	Deletion within transcript : mid-exon	PRECISE	3to5	BRCA1 (NM_007294) rearrangement: c.671-419_c.2323del	yes	unknown	2071	8171	19029	0	3
P-0020339-T01-IM6	SOMATIC	BRCA1	DCXR	17	17	41245251	79997295	Exon 10 of BRCA1(-)	Promoter of DCXR(-):4Kb from tx start		GRCh37	DUPLICATION	10	13	Protein Fusion: mid-exon  {BRCA1:DCXR}	PRECISE	5to3	BRCA1 (NM_007294) - DCXR (NM_016286) Rearrangement : c.2297:BRCA1_c.-1737:DCXR	yes	unknown	38752044	358492	362473	0	15
P-0025810-T01-IM6	SOMATIC	BRCA1	ERICH5	17	8	41244313	99107392	Exon 10 of BRCA1(-)	Promoter of ERICH5(+):31Kb from tx start		GRCh37	TRANSLOCATION	10	7	Protein Fusion: mid-exon  {BRCA1:ERICH5}	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: t(8;17)(q22.2;q21.31)(chr8:g.99107392::chr17:g.41244313)	yes	unknown	0	0	0	0	8
P-0024722-T01-IM6	SOMATIC	BRCA1	NGFR	17	17	41228583	47572328	Exon 13 of BRCA1(-)	Promoter of NGFR(+):326bp from tx start		GRCh37	INVERSION	6	2	Protein Fusion: mid-exon  {BRCA1:NGFR}	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: c.4406:BRCA1_chr17:g.47572328inv	yes	unknown	6343745	104923	169953	0	2
P-0036746-T01-IM6	SOMATIC	BRCA1	RPL27	17	17	41153639	41244192	Intron of RPL27(+):1Kb before exon 4	Exon 10 of BRCA1(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {BRCA1:RPL27}	PRECISE	5to5	BRCA1 (NM_007294) - RPL27 (NM_000988) Rearrangement : c.3356:BRCA1_c.252-1051:RPL27inv			90553	25556	31836	0	6
P-0053031-T01-IM6	SOMATIC	BRCA1	VIPR2	17	7	41223016	158866903	Exon 15 of BRCA1(-)	Intron of VIPR2(-):16Kb before exon 5		GRCh37	TRANSLOCATION	10	21	Protein Fusion: mid-exon  {BRCA1:VIPR2}	PRECISE	5to3	BRCA1 (NM_007294) - VIPR2 (NM_003382) rearrangement: t(7;17)(q36.3;q21.31)(chr7:g.158866903::chr17:g.41223016)	yes	unknown	0	0	0	0	21
P-0002792-T01-IM3	SOMATIC	BRCA1	SMAD3	17	15	41197391	67477119	3-UTR of BRCA1(-): 304bp after coding stop	Exon 7 of SMAD3(+)		GRCh37	TRANSLOCATION	72	33	SMAD3-BRCA1 fusion	PRECISE	5to5		yes	unknown	0	0	0	0	33
P-0040096-T02-IM7	SOMATIC	BRCA1	BRCA1	17	17	41016276	41241313	Promoter of AOC4P(+):3Kb from tx start	Intron of BRCA1(-):2Kb after exon 11		GRCh37	INVERSION	10	17	Transcript Fusion {BRCA1:AOC4P}	PRECISE	5to5	BRCA1 (NM_007294) rearrangement: c.4185+1648:BRCA1_chr17:g.41016276inv	yes	unknown	225037	36329	49831	0	17
P-0019937-T01-IM6	SOMATIC	BRCA2	NBEA	13	13	32911293	35518543	Exon 11 of BRCA2(+)	Intron of NBEA(+):1Kb after exon 1		GRCh37	INVERSION	10	76	Antisense Fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.2801:BRCA2_chr13:g.35518543inv	yes	unknown	2607250	70354	62967	0	74
P-0004946-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32915403	32920317	Intron of BRCA2(+): 70bp after exon 11	Intron of BRCA2(+): 647bp before exon 13		GRCh37	INVERSION	46	19	Antisense fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement event : c.6841+70_6938-647inv	yes	unknown	4914	1109	762	0	19
P-0049867-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32906510	32907335	Exon 10 of BRCA2(+)	Exon 10 of BRCA2(+)		GRCh37	INVERSION	10	2	Antisense Fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.895_c.1720inv	yes	unknown	825	1692	1852	0	2
P-0051721-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32911047	32913428	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)		GRCh37	INVERSION	8	2	Antisense Fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.2555_c.4936inv	yes	unknown	2381	11548	9911	0	1
P-0061999-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32929735	32945242	Intron of BRCA2(+):310bp after exon 14	Intron of BRCA2(+):5bp after exon 20		GRCh37	INVERSION	8	7	Antisense Fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.7435+310_c.8632+5inv	yes	unknown	15507	8476	10726	0	7
P-0077930-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32479425	32954367	5-UTR of EEF1DP3(+):54Kb before coding start	Intron of BRCA2(+):85bp after exon 24		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.9256+85:BRCA2_chr13:g.32479425inv	yes	unknown	474942	53223	73042	0	13
P-0039276-T01-IM6	SOMATIC	BRCA2	GUCY1B2	13	13	32913443	51613562	Exon 11 of BRCA2(+)	3-UTR of GUCY1B2(-):27Kb after coding stop		GRCh37	INVERSION	0	13	BRCA2-intragenic	IMPPRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.4951:BRCA2_chr13:g.51613562inv	yes	unknown	18700119	100854	89944	0	14
P-0040458-T01-IM6	SOMATIC	BRCA2	STARD13	13	13	32931878	33938000	Exon 16 of BRCA2(+)	Intron of STARD13(-):76Kb after exon 5		GRCh37	DUPLICATION	10	10	BRCA2-intragenic	PRECISE	5to3	BRCA2 (NM_000059) rearrangement: c.7618-1:BRCA2_chr13:g.33938000dup	yes	unknown	1006122	17926	21392	0	11
P-0042332-T01-IM6	SOMATIC	BRCA2	MIR3169	13	13	32944817	61534109	Intron of BRCA2(+):123bp after exon 19	IGR: 240Kb before MIR3169(-)		GRCh37	DELETION	10	30	BRCA2-intragenic	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.8487+123:BRCA2_chr13:g.61534109del	yes	unknown	28589292	63800	43265	0	30
P-0048608-T01-IM6	SOMATIC	BRCA2	UFM1	13	13	32914685	38945399	Exon 11 of BRCA2(+)	IGR: 21Kb before UFM1(+)		GRCh37	DELETION	10	10	BRCA2-intragenic	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.6193:BRCA2_chr13:g.38945399del	yes	unknown	6030714	40091	58405	0	11
P-0059376-T01-IM7	SOMATIC	BRCA2	LMO7DN-IT1	13	13	32913538	76644327	Exon 11 of BRCA2(+)	IGR: 193Kb before LMO7DN-IT1(+)		GRCh37	INVERSION	10	38	BRCA2-intragenic	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.5046:BRCA2_chr13:g.76644327inv	yes	unknown	43730789	203011	205836	0	38
P-0029336-T01-IM6	SOMATIC	BRCA2	LINC00371	13	13	32907285	51658908	Exon 10 of BRCA2(+)	3-UTR of LINC00371(-):87Kb after coding stop		GRCh37	INVERSION	10	38	BRCA2-intragenic	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: c.1670_chr13:g.51658908	yes	unknown	18751623	105986	80651	0	38
P-0041409-T01-IM6	SOMATIC	BRCA2	GARS	13	7	32969277	30630720	Intron of BRCA2(+):207bp after exon 25	IGR: 3Kb before GARS(+)		GRCh37	TRANSLOCATION	10	12	BRCA2-intragenic	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: t(7;13)(p14.3;q13.1)(chr7:g.30630720::chr13:g.32969277)	yes	unknown	0	0	0	0	12
P-0062547-T02-IM7	SOMATIC	BRCA2	LINC01950	13	5	32931774	105346351	Intron of BRCA2(+):104bp before exon 16	IGR: 805Kb before LOC102467213(-)		GRCh37	TRANSLOCATION	10	62	BRCA2-intragenic	PRECISE	5to5	BRCA2 (NM_000059) rearrangement: t(5;13)(q21.3;q13.1)(chr5:g.105346351::chr13:g.32931774)	yes	unknown	0	0	0	0	66
P-0064849-T01-IM7	SOMATIC	BRCA2	MIR548AJ2	13	4	32929036	23440583	Exon 14 of BRCA2(+)	3-UTR of MIR548AJ2(-):24Kb after coding stop		GRCh37	TRANSLOCATION	10	21	BRCA2-intragenic	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: t(4;13)(p15.2;q13.1)(chr4:g.23440583::chr13:g.32929036)	yes	unknown	0	0	0	0	21
P-0069678-T01-IM7	SOMATIC	BRCA2	PRR20D	13	13	32913347	57287774	Exon 11 of BRCA2(+)	IGR: 427Kb before PRR20D(+)		GRCh37	DELETION	10	6	BRCA2-intragenic	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.4855:BRCA2_chr13:g.57287774del	yes	unknown	24374427	149700	207355	0	6
P-0004892-T01-IM5	SOMATIC	BRCA2		13	11	32893422	15549664	Exon 3 of BRCA2(+)	IGR: 413Kb before INSC(+)		GRCh37	TRANSLOCATION			BRCA2-intragenic	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: t(13;11)(q13;p15.2)(chr13:g.32893422::chr11:g.11:15549664)			0	0	0	0	16
P-0014583-T01-IM6	SOMATIC	BRCA2		13	2	32912064	63335220	Exon 11 of BRCA2(+)	IGR: 13Kb before C2orf86(-)		GRCh37	TRANSLOCATION			BRCA2-intragenic	PRECISE	3to3	BRCA2 (NM_000059) rearrangement: t(2;13)(p15;q13.1)(chr2:g.63335220::chr13:g.:32912064)			0	0	0	0	35
P-0040328-T01-IM6	SOMATIC	BRCA2		13	13	32879719	32907145	Intron of ZAR1L(-):2Kb before exon 4	Exon 10 of BRCA2(+)		GRCh37	DELETION			BRCA2-intragenic	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.1530:BRCA2_chr13:g.32879719del			27426	8423	2100	0	37
P-0072907-T01-IM7	SOMATIC	BRCA2		13	6	32890643	35692810	Exon 2 of BRCA2(+)	5-UTR of FKBP5(-):149Kb before coding start		GRCh37	TRANSLOCATION			BRCA2-intragenic	PRECISE	5to3	BRCA2 (NM_000059) rearrangement: t(6;13)(p21.31;q13.1)(chr6:g.35692810::chr13:g.32890643)			0	0	0	0	13
P-0005741-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32929497	32964170	Intron of BRCA2(+): 72bp after exon 14	Intron of BRCA2(+): 5Kb before exon 25		GRCh37	DELETION	75	81	Deletion of 10 exons: in frame	PRECISE	3to5	BRCA2 (NM_000059) Rearrangement :  c.7435+72_9257-4656del	yes	unknown	34673	24705	12014	0	80
P-0004946-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32905203	32915545	Intron of BRCA2(+): 36bp after exon 9	Intron of BRCA2(+): 212bp after exon 11		GRCh37	DELETION	22	7	Deletion of 2 exons: in frame	PRECISE	3to5	BRCA2 (NM_000059) rearrangement event : c.793+36_6841+212del	yes	unknown	10342	53464	38043	0	7
P-0038074-T02-IM6	SOMATIC	BRCA2	BRCA2	13	13	32910509	32911232	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)		GRCh37	DELETION	10	53	Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.2017_c.2740del	yes	unknown	723	2924	3298	0	55
P-0049954-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32936581	32937622	Intron of BRCA2(+):78bp before exon 17	Exon 18 of BRCA2(+)		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.7806-79_c.8283del	yes	unknown	1041	3127	2205	0	10
P-0022156-T01-IM6	SOMATIC	BRCA2		13	13	32910992	32942344	Exon 11 of BRCA2(+)	Intron of BRCA2(+):2Kb before exon 19		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (M_000059) rearrangement: c.2500_c.8332-2195del			31352	44559	10795	0	62
P-0029140-T01-IM6	SOMATIC	BRCA2		13	13	32893377	32894288	Exon 3 of BRCA2(+)	Intron of BRCA2(+):826bp after exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.231_c.316+826del			911	482	288	0	2
P-0060393-T01-IM7	SOMATIC	BRCA2		13	13	32911082	32912412	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.2590_c.3920del			1330	1018	3388	0	20
P-0062868-T01-IM7	SOMATIC	BRCA2		13	13	32913225	32929279	Exon 11 of BRCA2(+)	Exon 14 of BRCA2(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	BRCA2 (NM_000059) rearrangement: c.4733_c.7289del			16054	19564	17860	0	5
P-0076134-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32924896	32929641	Intron of BRCA2(+):4Kb after exon 13	Intron of BRCA2(+):216bp after exon 14		GRCh37	DUPLICATION	10	12	Duplication of 1 exon : out of frame	PRECISE	5to3	BRCA2 (NM_000059) rearrangement: c.7007+3863_c.7435+216dup	yes	unknown	4745	3195	7189	0	12
P-0079110-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32950595	32972607	Intron of BRCA2(+):211bp before exon 21	Exon 27 of BRCA2(+)		GRCh37	DUPLICATION	10	8	Duplication within transcript : mid-exon	PRECISE	5to3	BRCA2 (NM_000059) rearrangement: c.8633-212_c.9957dup	yes	unknown	22012	14155	22276	0	8
P-0003055-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32906713	32941266	Exon 10 of BRCA2(+)	Intron of BRCA2(+): 3Kb before exon 19		GRCh37	DUPLICATION	18	9	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	34553	114951	122983	0	9
P-0035765-T01-IM6	SOMATIC	BRCA2	VCAN	13	5	32918847	82844662	Intron of BRCA2(+):57bp after exon 12	Intron of VCAN(+):759bp after exon 10		GRCh37	TRANSLOCATION	0	7	Protein Fusion: in frame  {BRCA2:VCAN}	IMPPRECISE	3to5	BRCA2 (NM_000059) - VCAN (NM_004385) rearrangement: t(5;13)(q14.3;q13.1)(chr5:g.82844662::chr13:g.32918847)	yes	unknown	0	0	0	0	7
P-0069200-T01-IM7	SOMATIC	BRCA2	TMPRSS2	21	13	42866350	32945390	Exon 3 of TMPRSS2(-)	Intron of BRCA2(+):153bp after exon 20		GRCh37	TRANSLOCATION	10	54	Protein Fusion: mid-exon  {BRCA2:TMPRSS2}	PRECISE	3to3	BRCA2 (NM_000059) - TMPRSS2 (NM_001135099) rearrangement: t(13;21)(q13.1;q22.3)(chr13:g.32945390::chr21:g.42866350)	yes	unknown	0	0	0	0	53
P-0022383-T01-IM6	SOMATIC	BRCA2	NUFIP1	13	13	32900465	45562034	Intron of BRCA2(+):46bp after exon 6	Intron of NUFIP1(-):1Kb after exon 1		GRCh37	INVERSION	10	6	Protein Fusion: out of frame  {NUFIP1:BRCA2}	PRECISE	5to5	NUFIP1 (NM_012345) - BRCA2 (NM_000059) rearrangement: c.412+1126:NUFIP1_c.516+46:BRCA2inv	yes	unknown	12661569	119085	84491	0	6
P-0071180-T01-IM7	SOMATIC	BRD4		22	19	50286436	15350048	Promoter of ZBED4(+):39Kb from tx start	Exon 18 of BRD4(-)		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to5	BRD4 (NM_058243) rearrangement: t(19;22)(p13.12;q13.33)(chr19:g.15350048::chr22:g.50286436)			0	0	0	0	5
P-0024117-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15352916	15354122	Intron of BRD4(-):794bp after exon 14	Exon 14 of BRD4(-)		GRCh37	INVERSION	4	2	BRD4-intragenic	PRECISE	3to3	BRD4 (NM_058243) rearrangement: c.2758_c.3169+795inv	yes	unknown	1206	3348	3213	0	2
P-0015412-T01-IM6	SOMATIC	BRD4		19	7	15367862	82248433	Exon 8 of BRD4(-)	IGR: 135Kb before PCLO(-)		GRCh37	TRANSLOCATION			BRD4-intragenic	PRECISE	5to5	BRD4 (NM_058243) Rearrangement : t(7;19)(q21.11;p13.12)(chr7:g.82248433::chr19:g.15367862)			0	0	0	0	28
P-0016244-T01-IM6	SOMATIC	BRD4		21	19	25706468	15350666	IGR: 30Kb before LOC101927869(-)	Intron of BRD4(-):34bp before exon 16		GRCh37	TRANSLOCATION			BRD4-intragenic	PRECISE	3to3	BRD4:NM_058243 Rearrangement : t(19;21)(p13.12;q21.3)(chr19:g.15350666::chr21:g.25706468)			0	0	0	0	69
P-0023926-T01-IM6	SOMATIC	BRD4		19	19	15354031	15421186	Exon 14 of BRD4(-)	IGR: 43Kb before AKAP8(-)		GRCh37	DELETION			BRD4-intragenic	PRECISE	3to5	BRD4 (NM_058243) rearrangement: chr19:g.15421186_ c.2849BRD4del			67155	44003	28159	0	16
P-0053278-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15356521	15383634	Intron of BRD4(-):948bp before exon 12	Exon 2 of BRD4(-)		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	BRD4 (NM_058243) rearrangement: c.277_c.2159-948del	yes	unknown	27113	25606	31506	0	13
P-0040347-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15354242	15358241	Exon 14 of BRD4(-)	Intron of BRD4(-):3Kb before exon 12		GRCh37	DELETION	10	26	Deletion within transcript : mid-exon	PRECISE	3to5	BRD4 (NM_058243) rearrangement: c.2159-2668_c.2638del	yes	unknown	3999	5013	3459	0	29
P-0012206-T01-IM5	SOMATIC	BRD4	BRD4	19	19	15353806	15378569	Exon 14 of BRD4(-)	Intron of BRD4(-): 207bp before exon 4		GRCh37	DELETION	41	41	Deletion within transcript: mid-exon	PRECISE	3to5	BRD4 (NM_058243) rearrangement:c.424-207_ c.3074del	yes	unknown	24763	40494	32497	0	40
P-0014313-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15360020	15380111	Intron of BRD4(-): 4Kb before exon 12	Intron of BRD4(-): 258bp before exon 3		GRCh37	DUPLICATION	36	32	Duplication of 9 exons: out of frame	PRECISE	5to3	BRD4 (NM_058243) rearrangement: c.286-258_c.2159-4447Gdup	yes	unknown	20091	31487	41901	0	31
P-0061880-T01-IM7	SOMATIC	BRD4	AKT2	19	19	15359252	40740959	Intron of BRD4(-):4Kb before exon 12	Exon 13 of AKT2(-)		GRCh37	DUPLICATION	7	2	Protein Fusion: mid-exon  {BRD4:AKT2}	PRECISE	5to3	BRD4 (NM_058243) - AKT2 (NM_001626) rearrangement: c.2159-3679:BRD4_c.1359:AKT2dup	yes	unknown	25381707	315071	430897	0	2
P-0067375-T01-IM7	SOMATIC	BRD4	BCL7C	19	16	15383705	30865849	Exon 2 of BRD4(-)	Intron of BCL7C(-):19Kb before exon 6		GRCh37	TRANSLOCATION	10	24	Protein Fusion: mid-exon  {BRD4:BCL7C}	PRECISE	5to3	BRD4 (NM_058243) rearrangement: t(16;19)(p11.2;p13.12)(chr16:g.30865849::chr19:g.15383705)	yes	unknown	0	0	0	0	24
P-0032351-T01-IM6	SOMATIC	BRD4	EPHX3	19	19	15340392	15354207	Intron of EPHX3(-):1Kb after exon 4	Exon 14 of BRD4(-)		GRCh37	DELETION	0	5	Protein Fusion: mid-exon  {BRD4:EPHX3}	IMPPRECISE	3to5	BRD4(NM_058243) - EPHX3(NM_024794) Fusion:  c.2673:BRD4_c.616+1381:EPHX3del	yes	unknown	13815	13007	23936	0	5
P-0026079-T01-IM6	SOMATIC	BRD4	FAR1	19	11	15383660	13726924	Exon 2 of BRD4(-)	Intron of FAR1(+):3Kb before exon 4		GRCh37	TRANSLOCATION	10	38	Protein Fusion: mid-exon  {BRD4:FAR1}	PRECISE	5to5	BRD4 (NM_058243) - FAR1 (NM_032228) Rearrangement: t(11;19)(11p15.3;19p13.12)(chr11:g.13726924::chr19:g.15383660)	yes	unknown	0	0	0	0	52
P-0032351-T01-IM6	SOMATIC	BRD4	PLEKHA2	19	8	15354210	38789930	Exon 14 of BRD4(-)	Intron of PLEKHA2(+):4Kb before exon 3		GRCh37	TRANSLOCATION	10	117	Protein Fusion: mid-exon  {BRD4:PLEKHA2}	PRECISE	5to5	BRD4(NM_058243) - PLEKHA2(NM_021623) Fusion: t(8;19)(p11.23;p13.13)(chr8:g.38789930::chr19:g.15354210)	yes	unknown	0	0	0	0	172
P-0068718-T01-IM7	SOMATIC	BRD4	PPP6R3	19	11	15376318	68250011	Exon 5 of BRD4(-)	5-UTR of PPP6R3(+):55Kb before coding start		GRCh37	TRANSLOCATION	0	15	Protein Fusion: mid-exon  {PPP6R3:BRD4}	IMPPRECISE	3to3	BRD4 (NM_058243) rearrangement: t(11;19)(q13.2;p13.12)(chr11:g.68250011::chr19:g.15376318)	yes	unknown	0	0	0	0	15
P-0069013-T02-IM7	SOMATIC	BRD4	NOTCH3	19	19	15292065	15364680	Intron of NOTCH3(-):92bp before exon 18	Intron of BRD4(-):282bp after exon 11		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {BRD4:NOTCH3}	PRECISE	3to5	BRD4 (NM_058243) - NOTCH3 (NM_000435) rearrangement: c.2158+283:BRD4_c.2793-92:NOTCH3del	yes	unknown	72615	32484	16996	0	5
P-0080591-T01-IM7	SOMATIC	BRD4	SLC1A6	19	19	15065672	15378110	Intron of SLC1A6(-):531bp before exon 7	Intron of BRD4(-):116bp after exon 4		GRCh37	DELETION			Protein Fusion: out of frame  {BRD4:SLC1A6}	PRECISE	3to5	BRD4 (NM_058243) - SLC1A6 (NM_005071) rearrangement: c.559+117:BRD4_c.1170-531:SLC1A6del			312438	121007	100081	0	9
P-0036276-T01-IM6	SOMATIC	BRD4	LINC00664	19	19	15349449	21676464	Intron of BRD4(-):104bp after exon 19	5-UTR of LINC00664(+):10Kb before coding start		GRCh37	INVERSION	10	27	Transcript Fusion {LINC00664:BRD4}	PRECISE	3to3	BRD4 (NM_058243) rearrangement: c.4020+105_chr19:g.21676464inv	yes	unknown	6327015	188872	234849	0	29
P-0023440-T01-IM6	SOMATIC	BRIP1	ABCA5	17	17	59885938	67262750	Exon 7 of BRIP1(-)	Intron of ABCA5(-):1Kb after exon 22		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	5to5	BRIP1 (NM_032043) - ABCA5 (NM_172232) rearrangement: c.808:BRIP1_c.3144+1334:ABCA5inv	yes	unknown	7376812	57038	59006	0	18
P-0061197-T01-IM7	SOMATIC	BRIP1	BRIP1	17	17	59853605	59864806	Intron of BRIP1(-):156bp after exon 14	Intron of BRIP1(-):3Kb before exon 11		GRCh37	INVERSION	10	55	Antisense Fusion	PRECISE	5to5	BRIP1 (NM_032043) rearrangement: c.1474-3021_c.2097+157inv	yes	unknown	11201	5463	12644	0	56
P-0070199-T01-IM7	SOMATIC	BRIP1	BRIP1	17	17	59884934	59886003	Intron of BRIP1(-):893bp after exon 7	Exon 7 of BRIP1(-)		GRCh37	INVERSION	8	5	Antisense Fusion	PRECISE	5to5	BRIP1 (NM_032043) rearrangement: c.743_c.918+894inv	yes	unknown	1069	768	1123	0	5
P-0048104-T01-IM6	SOMATIC	BRIP1	MED13	17	17	59761242	60088581	Exon 20 of BRIP1(-)	Exon 9 of MED13(-)		GRCh37	INVERSION	10	118	BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: c.3165:BRIP1_chr17:g.60088581inv	yes	unknown	327339	20255	44950	0	118
P-0043489-T01-IM6	SOMATIC	BRIP1	BRIP1	20	17	55040117	59886002	IGR: 4Kb before RTFDC1(+)	Exon 7 of BRIP1(-)		GRCh37	TRANSLOCATION	10	88	BRIP1-intragenic	PRECISE	3to5	BRIP1 (NM_032043) rearrangement: t(17;20)(q23.2;q13.31)(chr17:g.59886002::chr20:g.55040117)	yes	unknown	0	0	0	0	90
P-0040783-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59757201	59858382	3-UTR of BRIP1(-):3Kb after coding stop	Intron of BRIP1(-):16bp before exon 12		GRCh37	INVERSION	10	9	BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: c.1629-16:BRIP1_chr17:g.59757201inv	yes	unknown	101181	14735	19402	0	9
P-0076715-T02-IM7	SOMATIC	BRIP1	BRIP1	17	17	26653857	59926490	3-UTR of TMEM97(+):8Kb after coding stop	Exon 5 of BRIP1(-)		GRCh37	INVERSION	8	6	BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: c.507:BRIP1_chr17:g.26653857inv	yes	unknown	33272633	590398	1461286	0	6
P-0020951-T01-IM6	SOMATIC	BRIP1		17	17	59588702	59761387	IGR: 55Kb before TBX4(+)	Exon 20 of BRIP1(-)		GRCh37	INVERSION			BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: g.59588702_c.3020inv			172685	7536	16918	0	99
P-0021700-T01-IM6	SOMATIC	BRIP1		17	17	59761157	65862975	Exon 20 of BRIP1(-)	Intron of BPTF(+):172bp after exon 3		GRCh37	DELETION			BRIP1-intragenic	PRECISE	3to5	BRIP1 (NM_032043) rearrangement: c.3250_g.65862975del			6101818	77919	89668	0	5
P-0022364-T01-IM6	SOMATIC	BRIP1		17	17	59794190	59854028	Intron of BRIP1(-):766bp before exon 17	Intron of BRIP1(-):105bp before exon 14		GRCh37	INVERSION			BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: c.2380-766_c.1936-105inv			59838	4442	13939	0	25
P-0031007-T01-IM6	SOMATIC	BRIP1		17	17	59886062	60164321	Exon 7 of BRIP1(-)	IGR: 144Kb before MED13(-)		GRCh37	INVERSION			BRIP1-intragenic	PRECISE	3to3	BRIP1 (NM_032043) rearrangement: c.684:BRIP1_chr17:g.60164321inv			278259	7166	9155	0	12
P-0048251-T01-IM6	SOMATIC	BRIP1		17	17	59870929	69421263	Intron of BRIP1(-):28bp after exon 10	IGR: 327Kb before CASC17(-)		GRCh37	INVERSION			BRIP1-intragenic	PRECISE	5to5	BRIP1 (NM_032043) rearrangement: c.1473+29:BRIP1_chr17:g.69421263inv			9550334	67586	124818	0	50
P-0022174-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59831214	59870958	Intron of BRIP1(-):9Kb before exon 15	Exon 10 of BRIP1(-)		GRCh37	DELETION	6	4	Deletion within transcript : mid-exon	PRECISE	3to5	BRIP1 (NM_032043) rearrangement: c.1473_c.2098-9262del	yes	unknown	39744	6702	9040	0	4
P-0047288-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59760971	59762551	Exon 20 of BRIP1(-)	Intron of BRIP1(-):645bp after exon 19		GRCh37	DELETION	9	2	Deletion within transcript : mid-exon	PRECISE	3to5	BRIP1 (NM_032043) rearrangement: c.2905+646_c.3436del	yes	unknown	1580	3401	1686	0	2
P-0011331-T01-IM5	SOMATIC	BRIP1		17	17	59760837	59768085	Exon 20 of BRIP1(-)	Intron of BRIP1(-): 3Kb after exon 18		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	BRIP1 (NM_032043) Rearrangement :  c.2575+2706_c.3570del			7248	8930	9565	0	6
P-0002435-T01-IM3	SOMATIC	BRIP1	BRIP1	17	17	59853727	59861458	Intron of BRIP1(-): 35bp after exon 14	Intron of BRIP1(-): 173bp after exon 11		GRCh37	DUPLICATION	62	41	Duplication of 3 exons: out of frame	PRECISE	5to3		yes	unknown	7731	6971	7745	0	49
P-0053240-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59857562	59885760	Intron of BRIP1(-):59bp after exon 13	Intron of BRIP1(-):67bp after exon 7		GRCh37	DUPLICATION	10	26	Duplication of 6 exons : in frame	PRECISE	5to3	BRIP1 (NM_032043) rearrangement: c.918+68_c.1935+60dup	yes	unknown	28198	7888	12942	0	27
P-0071277-T01-IM7	SOMATIC	BRIP1	BRIP1	17	17	59769584	59770842	Intron of BRIP1(-):1Kb after exon 18	Exon 18 of BRIP1(-)		GRCh37	DUPLICATION	10	4	Duplication within transcript : mid-exon	PRECISE	5to3	BRIP1 (NM_032043) rearrangement: c.2524_c.2575+1207dup	yes	unknown	1258	472	348	0	4
P-0037834-T02-IM6	SOMATIC	BRIP1	C10orf90	17	10	59878659	128177587	Exon 8 of BRIP1(-)	Intron of C10orf90(-):15Kb after exon 3		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {BRIP1:C10orf90}	PRECISE	5to3	BRIP1 (NM_032043) - C10orf90 (NM_001004298) rearrangement: t(10;17)(q26.2;q23.2)(chr10:g.128177587::chr17:g.59878659)			0	0	0	0	36
P-0005691-T01-IM5	SOMATIC	BRIP1	PITPNC1	17	17	59760662	65375550	Exon 20 of BRIP1(-)	Intron of PITPNC1(+): 1Kb after exon 1		GRCh37	INVERSION	29	15	Protein fusion: mid-exon (BRIP1-PITPNC1)	PRECISE	5to5	BRIP1 (NM_032043)  -  PITPNC1 (NM_012417)  Rearrangement : c.3745:BRIP1_c.48+1232:PITPNC1inv	yes	unknown	5614888	66420	99807	0	15
P-0061967-T01-IM7	SOMATIC	BTK	BTK	X	X	100535302	100612538	Intron of TAF7L(-):1Kb before exon 7	Exon 13 of BTK(-)		GRCh37	INVERSION	0	32	Antisense Fusion	IMPPRECISE	5to5	BTK (NM_000061) rearrangement: c.1136:BTK_chrX:g.100535302inv	yes	unknown	77236	9893	12852	0	36
P-0039300-T01-IM6	SOMATIC	BTK	BTK	X	X	99466815	100608088	IGR: 80Kb before PCDH19(-)	Intron of BTK(-):93bp after exon 18		GRCh37	DELETION	10	28	BTK-intragenic	PRECISE	3to5	BTK (NM_000061) rearrangement: c.1908+94:BTK_chrX:g.99466815del	yes	unknown	1141273	1925	3174	0	37
P-0057026-T01-IM6	SOMATIC	BTK	BTK	X	X	87960713	100610770	IGR: 42Kb before CPXCR1(+)	Intron of BTK(-):269bp after exon 15		GRCh37	DELETION	10	13	BTK-intragenic	PRECISE	3to5	BTK (NM_000061) rearrangement: c.1566+270:BTK_chrX:g.87960713del	yes	unknown	12650057	14696	22876	0	13
P-0057263-T01-IM6	SOMATIC	BTK	LHFPL1	X	X	100629523	111729311	Exon 3 of BTK(-)	IGR: 145Kb before LHFPL1(-)		GRCh37	INVERSION	10	39	BTK-intragenic	PRECISE	5to5	BTK (NM_000061) rearrangement: c.240+1:BTK_chrX:g.111729311inv	yes	unknown	11099788	21813	32736	0	45
P-0008427-T01-IM5	SOMATIC	BTK		X	X	97658964	100608862	IGR: 1Mb before LOC442459(-)	Exon 17 of BTK(-)		GRCh37	INVERSION			BTK-intragenic	PRECISE	5to5	BTK (NM_000061) Rearrangement : chr10:g.97658964_c.1746:BTKinv			2949898	36373	26474	0	97
P-0003725-T01-IM5	SOMATIC	FGFR1	FGFR1	8	8	38275811	62143239	Exon 9 of FGFR1(-)	IGR: 57Kb before CLVS1(+)		GRCh37	INVERSION			c.1359-intragenic	PRECISE	3to3	c.1359:FGFR1_g.62143239inv			23867428	59503	76398	0	46
P-0003722-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27060996	27100790	Intron of ARID1A(+): 2Kb after exon 4	Intron of ARID1A(+): 30bp before exon 18		GRCh37	DELETION			Deletion of 13 exons: in frame	PRECISE	3to5	c.1920+1713_c.4102-30:ARID1Adel			39794	25936	21761	0	72
P-0001357-T02-IM5	SOMATIC	C15orf57	IGF1R	15	15	40850867	99434595	Intron of C15orf57(-): 1Kb before exon 3	Exon 3 of IGF1R(+)		GRCh37	INVERSION	17	12	Protein fusion: mid-exon (IGF1R-C15orf57)	PRECISE	3to3	IGF1R (NM_000875) - C15orf57 (NM_001080792) Rearrangement :  c.682:IGF1R_c.245-1296:C15orf57	yes	unknown	58583728	431377	363715	0	11
P-0073299-T01-IM7	SOMATIC	C16orf62	CDK4	16	12	19582140	58142422	Intron of C16orf62(+):1Kb after exon 3	Intron of CDK4(-):22bp before exon 8		GRCh37	TRANSLOCATION	10	26	Protein Fusion: in frame  {C16orf62:CDK4}	PRECISE	3to3	C16orf62 (NM_020314) - CDK4 (NM_000075) rearrangement: t(12;16)(q14.1;p12.3)(chr12:g.58142422::chr16:g.19582140)	yes	unknown	0	0	0	0	26
P-0003455-T02-IM5	SOMATIC	C19orf26	STK11	19	19	1223076	1236095	Exon 8 of STK11(+)	5-UTR of C19orf26(-): 14bp before coding start		GRCh37	INVERSION	15	10	Protein fusion: mid-exon (C19orf26-STK11)	PRECISE	5to5	C19orf26 (NM_152769) - STK11 (NM_000455) rearrangement: c.5:C19orf26_c.1013:STK11inv	yes	unknown	13019	2245	1751	0	10
P-0027395-T01-IM6	SOMATIC	C1orf234	SESN2	1	1	23343226	28599205	Promoter of C1orf234(-):6Kb from tx start	Exon 5 of SESN2(+)		GRCh37	DUPLICATION	10	39	Antisense Fusion	PRECISE	5to3	SESN2 (NM_031459) rearrangement: chr1:g.23343226_c.651dup	yes	unknown	5255979	69448	109175	0	40
P-0015191-T01-IM6	SOMATIC	C1orf52	BCL10	1	1	85724810	85733565	Intron of C1orf52(-): 231bp after exon 1	Exon 3 of BCL10(-)		GRCh37	INVERSION	12	7	Antisense fusion	PRECISE	5to5	BCL10 (NM_003921) - C1orf52 (NM_198077) rearrangement: c.447:BCL10_c.276+231:C1orf52inv	yes	unknown	8755	2126	2031	0	7
P-0040095-T01-IM6	SOMATIC	C20orf194	CDKN2A	20	9	3271180	21968295	Intron of C20orf194(-):317bp before exon 26	Intron of CDKN2A(-):54bp before exon 3		GRCh37	TRANSLOCATION	10	53	Protein Fusion: out of frame  {C20orf194:CDKN2A}	PRECISE	5to3	C20orf194 (NM_001009984) - CDKN2A (NM_000077) rearrangement: t(9;20)(p21.3;p13)(chr9:g.21968295::chr20:g.3271180)	yes	unknown	0	0	0	0	53
P-0019776-T01-IM6	SOMATIC	C20orf203	DNMT3B	20	20	31232283	31375154	3-UTR of C20orf203(-):6Kb after coding stop	Exon 6 of DNMT3B(+)		GRCh37	DUPLICATION			C20orf203-DNMT3B Fusion	PRECISE	5to3	C20orf203 (NM_182584) - DNMT3B (NM_006892) rearrangement: c.*1178-3794:C20orf203_c.551:DNMT3Bdup			142871	8098	9524	0	21
P-0061268-T01-IM7	SOMATIC	C2CD2	TMPRSS2	21	21	42867076	43366377	Intron of TMPRSS2(-):571bp before exon 3	Intron of C2CD2(-):4Kb before exon 2		GRCh37	DELETION	6	4	Protein Fusion: in frame  {C2CD2:TMPRSS2}	PRECISE	3to5	C2CD2 (NM_015500) - TMPRSS2 (NM_001135099) rearrangement: c.280-4023:C2CD2_c.127-571:TMPRSS2del	yes	unknown	499301	79551	89462	0	4
P-0086870-T01-IM7	SOMATIC	C2CD2	TMPRSS2	21	21	42867222	43316692	Intron of TMPRSS2(-):717bp before exon 3	Intron of C2CD2(-):2Kb after exon 12		GRCh37	DELETION			Protein Fusion: out of frame  {C2CD2:TMPRSS2}	PRECISE	3to5	C2CD2 (NM_015500) - TMPRSS2 (NM_001135099) rearrangement: c.1870+2470:C2CD2_c.127-717:TMPRSS2del			449470	73298	63763	0	32
P-0052218-T01-IM6	SOMATIC	C7orf63	ALK								GRCh37				C7orf63-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: C7orf63-ALK fusion. Note: The rearrangement is an out of frame fusion between genes C7orf63 Exon1 (NM_001039706) and ALK Exon2 (NM_004304). Note2: This fusion is out of frame and does not involve the canonical exon usually involved in ALK kinase gene fusion events. Confirmatory testing is indicated.	yes	unknown					
P-0030787-T01-IM6	SOMATIC	CFAP418-AS1	RAD21	8	8	96518250	117864104	5-UTR of C8orf37-AS1(+):304Kb before coding start	Intron of RAD21(-):82bp after exon 11		GRCh37	DELETION	10	10	Antisense Fusion	PRECISE	3to5	RAD21 (NM_006265) Rearrangement: c.1470+83:RAD21_chr8:g.96518250del	yes	unknown	21345854	13245	21223	0	10
P-0037767-T01-IM6	SOMATIC	CA10	RECQL4	17	8	50212204	145742559	Intron of CA10(-):23Kb after exon 1	Exon 4 of RECQL4(-)		GRCh37	TRANSLOCATION	10	14	Protein Fusion: mid-exon  {CA10:RECQL4}	PRECISE	5to3	CA10 (NM_001082533) - RECQL4 (NM_004260) rearrangement: t(8;17)(q24.3;q21.33)(chr8:g.145742559::chr17:g.50212204)	yes	unknown	0	0	0	0	14
P-0030473-T01-IM6	SOMATIC	CACNA1C	KDM5A	12	12	465876	2611555	Intron of KDM5A(-):173bp before exon 6	Intron of CACNA1C(+):2Kb before exon 8		GRCh37	INVERSION			Protein Fusion: in frame  {CACNA1C:KDM5A}	PRECISE	3to3	CACNA1C (NM_001129827) - KDM5A (NM_001042603) rearrangement: c.1114-2453:CACNA1C_c.673-173:KDM5Ainv			2145679	25385	136399	0	20
P-0069688-T01-IM7	SOMATIC	CACNA1G	CDK12	17	17	37667420	48702869	Intron of CDK12(+):361bp before exon 8	Intron of CACNA1G(+):508bp before exon 36		GRCh37	DUPLICATION	10	15	Protein Fusion: out of frame  {CACNA1G:CDK12}	PRECISE	5to3	CACNA1G (NM_018896) - CDK12 (NM_016507) rearrangement: c.6400-509:CACNA1G_c.2667-362:CDK12dup	yes	unknown	11035449	368959	2134465	0	20
P-0042766-T01-IM6	SOMATIC	CALR	CAMK4	19	5	13054685	110677593	Exon 9 of CALR(+)	Intron of CAMK4(+):2Kb before exon 2		GRCh37	TRANSLOCATION	10	36	Antisense Fusion	PRECISE	3to3	CALR (NM_004343) rearrangement: t(5;19)(q22.1;p13.2)(chr5:g.110677593::chr19:g.13054685)	yes	unknown	0	0	0	0	36
P-0052917-T01-IM6	SOMATIC	CALR	ACPT	19	19	13050383	51297482	Exon 3 of CALR(+)	Intron of ACPT(+):231bp before exon 9		GRCh37	INVERSION	10	244	Antisense Fusion	PRECISE	3to3	CALR (NM_004343) rearrangement: c.335:CALR_chr19:g.51297482inv	yes	unknown	38247099	826120	1933420	0	239
P-0052869-T01-IM6	SOMATIC	CALR	KCNH7	19	2	13050661	163419180	Intron of CALR(+):205bp before exon 4	Intron of KCNH7(-):26Kb before exon 3		GRCh37	TRANSLOCATION	10	8	CALR-intragenic	PRECISE	5to3	CALR (NM_004343) rearrangement: t(2;19)(q24.2;p13.2)(chr2:g.163419180::chr19:g.13050661)	yes	unknown	0	0	0	0	8
P-0013151-T01-IM5	SOMATIC	CALR		19	19	13051433	19681239	Exon 6 of CALR(+)	Intron of PBX4(-): 131bp before exon 4		GRCh37	DUPLICATION			CALR-intragenic	PRECISE	5to3	CALR (NM_004343) Rearrangement : c.781:CALR_c.442-131:PBX4dup			6629806	258131	359144	0	34
P-0059129-T01-IM7	SOMATIC	CALR		19	19	13051617	28782455	Exon 7 of CALR(+)	IGR: 144Kb before LOC100420587(-)		GRCh37	DELETION			CALR-intragenic	PRECISE	3to5	CALR (NM_004343) rearrangement: c.876:CALR_chr19:g.28782455del			15730838	386386	335762	0	15
P-0051894-T01-IM6	SOMATIC	CALR	CALR	19	19	13051698	13054348	Exon 7 of CALR(+)	Intron of CALR(+):2bp before exon 8		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	CALR (NM_004343) rearrangement: c.957_c.961-3del	yes	unknown	2650	863	1263	0	15
P-0063302-T01-IM7	SOMATIC	CALR	CALR	19	19	13050131	13054310	Intron of CALR(+):82bp after exon 2	Intron of CALR(+):40bp before exon 8		GRCh37	DUPLICATION	0	5	Duplication of 5 exons : out of frame	IMPPRECISE	5to3	CALR (NM_004343) rearrangement: c.193+82_c.961-41dup	yes	unknown	4179	7087	10330	0	5
P-0014624-T01-IM6	SOMATIC	CALR	RAD23A	19	19	13051812	13058313	Intron of CALR(+): 111bp after exon 7	Intron of RAD23A(+): 349bp before exon 2		GRCh37	DELETION	10	6	Protein fusion: in frame (CALR-RAD23A)	PRECISE	3to5	CALR (NM_004343)  - RAD23A (NM_005053) rearrangement: c.960+111:CALR_c.73-349:RAD23Adel	yes	unknown	6501	2900	2902	0	5
P-0070512-T03-IM7	SOMATIC	CALR	CALR	21	19	39631913	13054344	5-UTR of KCNJ15(+):39Kb before coding start	Intron of CALR(+):6bp before exon 8		GRCh37	TRANSLOCATION	10	37	Transcript Fusion {KCNJ15:CALR}	PRECISE	3to5	CALR (NM_004343) rearrangement: t(19;21)(p13.2;q22.13)(chr19:g.13054344::chr21:g.39631913)	yes	unknown	0	0	0	0	37
P-0058856-T01-IM7	SOMATIC	CAMK1D	GATA3	10	10	8115921	12447861	Exon 6 of GATA3(+)	Intron of CAMK1D(+):56Kb after exon 1		GRCh37	DUPLICATION	10	29	Protein Fusion: mid-exon  {CAMK1D:GATA3}	PRECISE	5to3	CAMK1D (NM_153498) - GATA3 (NM_002051) rearrangement: c.92+55952:CAMK1D_c.1267:GATA3dup	yes	unknown	4331940	9561	10014	0	31
P-0064684-T01-IM7	SOMATIC	CAMK2A	CD74	5	5	149654050	149784826	Intron of CAMK2A(-):1Kb before exon 2	Intron of CD74(-):83bp before exon 5		GRCh37	DUPLICATION	10	37	Protein Fusion: out of frame  {CAMK2A:CD74}	PRECISE	5to3	CAMK2A (NM_015981) - CD74 (NM_001025159) rearrangement: c.63-1328:CAMK2A_c.442-83:CD74dup	yes	unknown	130776	9424	14772	0	38
P-0023788-T01-IM6	SOMATIC	CAMK4	APC	5	5	110709642	112177852	Intron of CAMK4(+):905bp before exon 3	Exon 16 of APC(+)		GRCh37	DELETION	7	5	Protein Fusion: mid-exon  {CAMK4:APC}	PRECISE	3to5	CAMK4 (NM_001744) - APC (NM_000038) Rearrangement : c.241-906:CAMK4_c.6561:APCdel	yes	unknown	1468210	25240	39210	0	5
P-0070307-T02-IM7	SOMATIC	CAMK4	CHEK1	11	5	125513779	110711159	Exon 9 of CHEK1(+)	Intron of CAMK4(+):549bp after exon 3		GRCh37	TRANSLOCATION	9	5	Protein Fusion: mid-exon  {CAMK4:CHEK1}	PRECISE	5to3	CAMK4 (NM_001744) - CHEK1 (NM_001274) rearrangement: t(5;11)(q22.1;q24.2)(chr5:g.110711159::chr11:g.125513779)	yes	unknown	0	0	0	1	4
P-0038925-T04-IM7	SOMATIC	CAMKMT	EPAS1	2	2	44637015	46587664	Intron of CAMKMT(+):20Kb after exon 3	Intron of EPAS1(+):112bp before exon 5		GRCh37	DELETION	10	29	Protein Fusion: in frame  {CAMKMT:EPAS1}	PRECISE	3to5	CAMKMT (NM_024766) - EPAS1 (NM_001430) rearrangement: c.376+19571:CAMKMT_c.455-113:EPAS1del	yes	unknown	1950649	11792	14358	0	30
P-0035289-T01-IM6	SOMATIC	CAMSAP1	NOTCH1								GRCh37				CAMSAP1-NOTCH1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CAMSAP1-NOTCH1 fusion. Note: The rearrangement is an in frame fusion between genes CAMSAP1 Exon1 (XM_005263396) and NOTCH1 Exon28 (NM_017617).	yes	unknown					
P-0035289-T01-IM6	SOMATIC	CAMSAP1	NOTCH1	9	9	138782419	139397392	Intron of CAMSAP1(-):7Kb before exon 2	Intron of NOTCH1(-):241bp after exon 27		GRCh37	DUPLICATION	10	231	Protein Fusion: in frame  {CAMSAP1:NOTCH1}	PRECISE	5to3	CAMSAP1 (NM_015447) - NOTCH1 (NM_017617) rearrangement: c.161-7495:CAMSAP1_c.5167+242:NOTCH1dup	yes	unknown	614973	28922	375084	0	289
P-0055174-T02-IM6	SOMATIC	CAPZA2	MET								GRCh37				CAPZA2-MET Fusion - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   MET exon 14 deletion (NM_000245). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CAPZA2-MET fusion. Note: The rearrangement is an in-frame fusion between genes CAPZA2 Exon1 (NM_006136) and MET Exon6 (NM_000245).	yes	unknown					
P-0045809-T02-IM6	SOMATIC	CAPZA2	MET								GRCh37				CAPZA2-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CAPZA2-MET fusion. Note: The rearrangement is an in-frame fusion between genes CAPZA2 Exon1 (NM_006136) and MET Exon6 (NM_000245).	yes	unknown					
P-0050793-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2985550	2989468	Exon 4 of CARD11(-)	Intron of CARD11(-):2Kb before exon 3		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	CARD11 (NM_032415) rearrangement: c.8-2047_c.261inv	yes	unknown	3918	2503	3057	0	20
P-0071359-T01-IM7	SOMATIC	CARD11	CARD11	7	7	2976887	2980792	Intron of CARD11(-):19bp before exon 9	Intron of CARD11(-):1Kb before exon 6		GRCh37	INVERSION	10	40	CARD11-intragenic	PRECISE	3to3	CARD11 (NM_032415) rearrangement: c.685-1230_c.1144-19inv	yes	unknown	3905	3635	9127	0	39
P-0022482-T01-IM6	SOMATIC	CARD11		7	7	2978422	3588919	Exon 7 of CARD11(-)	Intron of SDK1(+):70Kb before exon 2		GRCh37	DELETION			CARD11-intragenic	PRECISE	3to5	CARD11 (NM_032415) rearrangement: c.908_chr7:g.3588919del			610497	13002	17096	0	42
P-0025024-T01-IM6	SOMATIC	CARD11		15	7	36753672	2972275	IGR: 118Kb before C15orf41(+)	Intron of CARD11(-):55bp before exon 11		GRCh37	TRANSLOCATION			CARD11-intragenic	IMPPRECISE	5to3	CARD11 (NM_032415) rearrangemnt: t(7;15)(p22.2;q14)(chr7:g.2972275::chr15:g.36753672)			0	0	0	0	29
P-0037044-T01-IM6	SOMATIC	CARD11		15	7	95532040	2983615	IGR: 133Kb before LOC440311(+)	Intron of CARD11(-):230bp after exon 5		GRCh37	TRANSLOCATION			CARD11-intragenic	PRECISE	3to5	CARD11 (NM_032415) rearrangement: t(7;15)(p22.2;q26.2)(chr7:g.2983615::chr15:g.95532040)			0	0	0	0	22
P-0078241-T01-IM7	SOMATIC	CARD11	CARD11	7	7	2955393	2958985	Intron of CARD11(-):387bp before exon 21	Intron of CARD11(-):20bp after exon 18		GRCh37	DELETION	10	86	Deletion of 2 exons : out of frame	PRECISE	3to5	CARD11 (NM_032415) rearrangement: c.2510+21_c.2704-387del	yes	unknown	3592	2124	1476	0	89
P-0015937-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2976834	2977582	Exon 9 of CARD11(-)	Exon 8 of CARD11(-)		GRCh37	DELETION	0	5	Deletion within transcript : mid-exon	IMPPRECISE	3to5	CARD11 (NM_032415) Rearrangement : c.1102_c.1178del	yes	unknown	748	1032	434	0	7
P-0045318-T01-IM6	SOMATIC	CARD11		7	7	2979444	2987527	Exon 6 of CARD11(-)	Intron of CARD11(-):106bp before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CARD11 (NM_032415) rearrangement: c.8-106_c.803del			8083	8100	12884	0	4
P-0005091-T01-IM5	SOMATIC	CARD11	CARD11	7	7	2983810	2990569	Intron of CARD11(-): 36bp after exon 5	Intron of CARD11(-): 3Kb before exon 3		GRCh37	DUPLICATION	6	5	Duplication of 3 exons: out of frame	PRECISE	5to3	CARD11 (NM_032415) rearrangement: c.8-3148_c.684+36dup	yes	unknown	6759	8356	10297	0	5
P-0042414-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2966879	2974435	Intron of CARD11(-):454bp before exon 14	Intron of CARD11(-):172bp before exon 10		GRCh37	DUPLICATION	10	8	Duplication of 4 exons : out of frame	PRECISE	5to3	CARD11 (NM_032415) rearrangement: c.1342-172_c.1755-454dup	yes	unknown	7556	3684	8717	0	8
P-0006948-T01-IM5	SOMATIC	CARD11	CARD11	7	7	2946387	2952224	Exon 25 of CARD11(-)	Intron of CARD11(-): 294bp before exon 23		GRCh37	DUPLICATION	53	47	Duplication within transcript: mid-exon	PRECISE	5to3	CARD11 (NM_032415) rearrangement: c.3020-294_c.3350dup	yes	unknown	5837	5423	6947	0	46
P-0038740-T01-IM6	SOMATIC	CARM1	C19ORF68	19	19	11027399	11045749	Exon 8 of CARM1(+)	IGR: 6Kb before C19orf52(+)		GRCh37	INVERSION	10	8	CARM1-intragenic	PRECISE	3to3	CARM1 (NM_199141) rearrangement: c.966:CARM1_chr19:g.11045749inv	yes	unknown	18350	14868	19590	0	7
P-0045865-T01-IM6	SOMATIC	CARM1	CARM1	19	19	10044605	11018782	Intron of OLFM2(-):2Kb after exon 1	Exon 3 of CARM1(+)		GRCh37	DELETION	10	49	CARM1-intragenic	PRECISE	3to5	CARM1 (NM_199141) rearrangement: c.414:CARM1_chr19:g.10044605del	yes	unknown	974177	55679	71627	0	53
P-0020306-T01-IM6	SOMATIC	CARM1		19	1	11031667	111953456	Intron of CARM1(+):45bp after exon 13	IGR: 3Kb before OVGP1(-)		GRCh37	TRANSLOCATION			CARM1-intragenic	PRECISE	5to5	CARM1 (NM_199141) rearrangement: t(1;19)(p13.2;p13.2)(chr1:g.111953456::chr19:g.11031667)			0	0	0	0	13
P-0029353-T01-IM6	SOMATIC	CARM1		19	19	11015795	24480361	Intron of CARM1(+):43bp after exon 2	IGR: 135Kb before HAVCR1P1(-)		GRCh37	INVERSION			CARM1-intragenic	PRECISE	3to3	CARM1 (NM_199141) Rearrangement: c.346+43:CARM1_chr19:g.24480361inv			13464566	283487	467830	0	4
P-0034685-T01-IM6	SOMATIC	CARM1		19	19	11023541	11027453	Intron of CARM1(+):571bp after exon 5	Exon 8 of CARM1(+)		GRCh37	INVERSION			CARM1-intragenic	PRECISE	5to5	CARM1 (NM_199141) Rearrangement: c.669+571_c.1020inv			3912	4437	7362	0	11
P-0074722-T01-IM7	SOMATIC	CARM1		19	16	11031791	69538317	Exon 14 of CARM1(+)	IGR: 61Kb before MIR1538(-)		GRCh37	TRANSLOCATION			CARM1-intragenic	PRECISE	3to3	CARM1 (NM_199141) rearrangement: t(16;19)(q22.1;p13.2)(chr16:g.69538317::chr19:g.11031791)			0	0	0	0	49
P-0023721-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11021278	11027432	Intron of CARM1(+):1Kb after exon 4	Exon 8 of CARM1(+)		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	CARM1 (NM_199141) rearrangement: c.558+1395_c.999del	yes	unknown	6154	8109	8312	0	5
P-0059302-T01-IM7	SOMATIC	CARM1	CARM1	19	19	11018814	11022853	Exon 3 of CARM1(+)	Intron of CARM1(+):6bp before exon 5		GRCh37	DUPLICATION	10	38	Duplication within transcript : mid-exon	PRECISE	5to3	CARM1 (NM_199141) rearrangement: c.446_c.559-7dup	yes	unknown	4039	1862	4952	0	40
P-0061481-T01-IM7	SOMATIC	CARM1	DNM2	19	19	10891462	11015859	Intron of DNM2(+):2Kb before exon 6	Intron of CARM1(+):107bp after exon 2		GRCh37	DUPLICATION	10	13	Protein Fusion: in frame  {CARM1:DNM2}	PRECISE	5to3	CARM1 (NM_199141) - DNM2 (NM_001005361) rearrangement: c.346+107:CARM1_c.689-2174:DNM2dup	yes	unknown	124397	4766	5453	0	14
P-0023324-T01-IM6	SOMATIC	CARM1	DNM2	19	19	10833447	11027455	Intron of DNM2(+):4Kb after exon 1	Intron of CARM1(+):2bp after exon 8		GRCh37	DUPLICATION			Protein Fusion: out of frame  {CARM1:DNM2}	PRECISE	5to3	CARM1 (NM_199141) - DNM2 (NM_001005361) rearrangement: c.1020+2:CARM1_c.161+4368:DNM2dup			194008	15929	12808	0	8
P-0025637-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	10998878	11105686	Intron of CARM1(+):16Kb after exon 1	Intron of SMARCA4(+):9bp after exon 9		GRCh37	DUPLICATION	10	47	Protein Fusion: out of frame  {SMARCA4:CARM1}	PRECISE	5to3	SMARCA4 (NM_003072) - CARM1 (NM_199141) Rearrangement : c.1593+9:SMARCA4_c.220+16280:NF1dup	yes	unknown	106808	26546	50726	0	48
P-0056343-T02-IM6	SOMATIC	CARM1	CARM1	19	19	7957495	11031724	5-UTR of LRRC8E(+):3Kb before coding start	Intron of CARM1(+):1bp before exon 14		GRCh37	DUPLICATION	10	40	Transcript Fusion {CARM1:LRRC8E}	PRECISE	5to3	CARM1 (NM_199141) rearrangement: c.1538-2:CARM1_chr19:g.7957495dup	yes	unknown	3074229	114447	206588	0	40
P-0046576-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202136397	202138408	Intron of CASP8(+):53bp after exon 3	Intron of CASP8(+):743bp after exon 5		GRCh37	INVERSION	0	6	Antisense Fusion	IMPPRECISE	3to3	CASP8 (NM_001080125) rearrangement: c.588+53_c.772+743inv	yes	unknown	2011	2263	3022	0	6
P-0037867-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202108480	202141637	5-UTR of CASP8(+):23Kb before coding start	Exon 7 of CASP8(+)		GRCh37	DELETION	10	30	Deletion within transcript : mid-exon	PRECISE	3to5	CASP8 (NM_001080125) rearrangement: c.925:CASP8_chr2:g.202108480del	yes	unknown	33157	8162	5115	0	33
P-0028989-T01-IM6	SOMATIC	CASP8	ARNT2	15	2	80780567	202134423	Intron of ARNT2(+):13Kb after exon 5	Intron of CASP8(+):2Kb before exon 3		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CASP8:ARNT2}	PRECISE	5to3	CASP8 (c.483-1816) - ARNT2 (NM_014862) rearrangement: t(2;15)(q33.1;q25.1)(chr2:g.202134423::chr15:g.80780567).			0	0	0	0	35
P-0061731-T01-IM7	SOMATIC	CATSPERG	MLLT1	19	19	6270649	38852333	Exon 2 of MLLT1(-)	Exon 17 of CATSPERG(+)		GRCh37	INVERSION	0	25	Protein Fusion: mid-exon  {CATSPERG:MLLT1}	IMPPRECISE	3to3	CATSPERG (NM_021185) - MLLT1 (NM_005934) rearrangement: c.1926:CATSPERG_c.134:MLLT1inv	yes	unknown	32581684	836328	974063	0	25
P-0031208-T01-IM6	SOMATIC	CBFB		16	16	67063772	73099214	Intron of CBFB(+):56bp after exon 2	IGR: 27Kb before HCCAT5(+)		GRCh37	INVERSION			CBFB-intragenic	IMPPRECISE	3to3	CBFB (NM_022845) rearrangement: c.165+56_chr16:g.73099214inv			6035442	151025	132536	0	8
P-0084533-T01-IM7	SOMATIC	CBFB		16	8	67116094	133637480	Intron of CBFB(+):21bp before exon 5	Intron of LRRC6(-):37bp after exon 6		GRCh37	TRANSLOCATION			CBFB-intragenic	PRECISE	5to3	CBFB (NM_022845) rearrangement: t(8;16)(q24.22;q22.1)(chr8:g.133637480::chr16:g.67116094)			0	0	0	0	40
P-0042610-T01-IM6	SOMATIC	CBFB	CDH3	16	16	67063310	68679384	Exon 1 of CBFB(+)	Intron of CDH3(+):57bp after exon 1		GRCh37	INVERSION	10	2	CDH3-CBFB fusion	PRECISE	5to5	CBFB (NM_022845) - CDH3 (NM_001793) rearrangement: c.4:CBFB_c.45+57:CDH3inv	yes	unknown	1616074	29314	39545	0	4
P-0018351-T01-IM6	SOMATIC	CBFB	CBFB	16	16	67116241	67132612	Intron of CBFB(+):30bp after exon 5	Exon 6 of CBFB(+)		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	CBFB (NM_022845) rearrangement: c.495+30_c.496-1del	yes	unknown	16371	1059	758	0	6
P-0022015-T01-IM6	SOMATIC	CBFB	SLC6A14	X	16	115585009	67063698	Intron of SLC6A14(+):480bp before exon 10	Exon 2 of CBFB(+)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {CBFB:SLC6A14}	PRECISE	5to3	CBFB (NM_022845) - SLC6A14 (NM_007231) rearrangement: t(X;16)(q23;q22.1)(chrX:g.115585009::chr16:g.67063698)			0	0	0	0	18
P-0034268-T01-IM6	SOMATIC	CBL	CBL	11	11	104728227	119103375	IGR: 28Kb before CASP12(-)	Exon 2 of CBL(+)		GRCh37	DELETION	10	13	CBL-intragenic	PRECISE	3to5	CBL (NM_005188) rearrangement: c.413:CBL_chr11:g.104728227del	yes	unknown	14375148	120225	192982	0	13
P-0020120-T01-IM6	SOMATIC	CBL		11	11	119148596	119150199	Intron of CBL(+):42bp after exon 7	Intron of CBL(+):776bp after exon 9		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	CBL (NM_005188) rearrangement: c.1095+42_c.1431+776del			1603	5562	5085	0	28
P-0043829-T01-IM6	SOMATIC	CBL		11	11	119148994	119151557	Exon 8 of CBL(+)	Intron of CBL(+):2Kb after exon 9		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CBL (NM_005188) rearrangement: c.1214_c.1431+2134del			2563	1947	2021	0	66
P-0070629-T01-IM7	SOMATIC	CBL		11	11	119148972	119150699	Exon 8 of CBL(+)	Intron of CBL(+):1Kb after exon 9		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CBL (NM_005188) rearrangement: c.1192_c.1431+1276del			1727	2090	2141	0	45
P-0050675-T02-IM7	SOMATIC	CBL	SBF2	11	11	10041344	119170279	Intron of SBF2(-):9Kb after exon 6	Exon 16 of CBL(+)		GRCh37	INVERSION	10	46	Protein Fusion: mid-exon  {CBL:SBF2}	PRECISE	3to3	CBL (NM_005188) - SBF2 (NM_030962) rearrangement: c.2509:CBL_c.619+8655:SBF2inv	yes	unknown	109128935	851908	1557201	0	45
P-0026475-T01-IM6	SOMATIC	CCDC170	ESR1	6	6	151927845	152265421	Intron of CCDC170(+):9Kb before exon 10	Exon 5 of ESR1(+)		GRCh37	DUPLICATION	10	36	Protein Fusion: mid-exon  {ESR1:CCDC170}	PRECISE	5to3	ESR1 (NM_001122740) - CCDC170 (NM_025059) rearrangement: c.874:ESR1_c.1711-8733:CCDC170dup	yes	unknown	337576	6981	8286	0	41
P-0071559-T01-IM7	SOMATIC	CCDC186	RET								GRCh37				CCDC186-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC186-RET fusion. Note: The rearrangement is an in-frame fusion between genes CCDC186 Exon15 (NM_018017) and RET Exon12 (NM_020975).	yes	unknown					
P-0015735-T01-IM6	SOMATIC	CCDC45	RPTOR	17	17	62508201	78811904	Intron of CCDC45(+): 2Kb after exon 3	Intron of RPTOR(+): 107bp after exon 10		GRCh37	DUPLICATION	15	5	Protein fusion: out of frame (RPTOR-CCDC45)	PRECISE	5to3	RPTOR (NM_020761) - CEP95 (NM_138363) Rearrangement : c.1212+107:RPTOR_c.256+1803:CEPN5dup	yes	unknown	16303703	85092	126719	0	5
P-0016038-T01-IM6	SOMATIC	CCDC6	RET								GRCh37				CCDC6-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC6-RET fusion. Note: The rearrangement is an in-frame fusion between genes CCDC6 Exon1 (NM_005436) and RET Exon12 (NM_020975).	yes	unknown					
P-0073813-T01-IM7	SOMATIC	CCDC6	RET								GRCh37				CCDC6-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC6-RET fusion. Note: The rearrangement is an in-frame fusion between genes CCDC6 Exon8 (NM_005436) and RET Exon12 (NM_020975).	yes	unknown					
P-0008504-T03-IM6	SOMATIC	CCDC6	RET								GRCh37				CCDC6-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC6-RET fusion. Note: The rearrangement is an in-frame fusion between genes CCDC6 Exon8 (NM_005436) and RET Exon12 (NM_020975).	yes	unknown					
P-0029997-T01-IM6	SOMATIC	CCDC6	RET								GRCh37				CCDC6-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC6-RET fusion. Note: The rearrangement is an in-frame fusion between genes CCDC6 Exon1 (NM_005436) and RET Exon12 (NM_020975).	yes	unknown					
P-0028529-T01-IM6	SOMATIC	CCDC6	ROS1								GRCh37				CCDC6-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CCDC6-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CCDC6 Exon5 (NM_005436) and ROS1 Exon35 (NM_002944).	yes	unknown					
P-0037412-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610839	61624434	Intron of RET(+):655bp after exon 11	Intron of CCDC6(-):12Kb before exon 2		GRCh37	INVERSION	10	52	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-11974:CCDC6_c.2136+655:RETinv	yes	unknown	18013595	36289	32133	0	65
P-0047144-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611888	61657033	Intron of RET(+):143bp before exon 12	Intron of CCDC6(-):9Kb after exon 1		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+8847:CCDC6_c.2137-144:RETinv	yes	unknown	18045145	30381	29411	1	49
P-0057735-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611887	61665755	Intron of RET(+):144bp before exon 12	Intron of CCDC6(-):124bp after exon 1		GRCh37	INVERSION	10	60	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+125:CCDC6_c.2137-145:RETinv	yes	unknown	18053868	32025	38412	0	79
P-0059857-T02-IM7	SOMATIC	CCDC6	RET	10	10	43611615	61604308	Intron of RET(+):416bp before exon 12	Intron of CCDC6(-):8Kb after exon 2		GRCh37	INVERSION	10	97	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.453+8003:CCDC6_c.2137-417:RETinv	yes	unknown	17992693	62027	142945	0	104
P-0051781-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610377	61651178	Intron of RET(+):193bp after exon 11	Intron of CCDC6(-):15Kb after exon 1		GRCh37	INVERSION	10	8	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+14702:CCDC6_c.2136+193:RETinv	yes	unknown	18040801	55224	28512	0	11
P-0042417-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610397	61649492	Intron of RET(+):213bp after exon 11	Intron of CCDC6(-):16Kb after exon 1		GRCh37	INVERSION	10	67	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+16388:CCDC6_c.2136+213:RETinv	yes	unknown	18039095	36222	35906	0	75
P-0008504-T03-IM6	SOMATIC	CCDC6	RET	10	10	43610583	61553732	Intron of RET(+):399bp after exon 11	Intron of CCDC6(-):498bp after exon 8		GRCh37	INVERSION			Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion ( CCDC6 exons 1-8 fused to RET exons 12-20): c.1230+499:CCDC6_c.2136+399:RETinv			17943149	11832	27097	0	49
P-0064853-T01-IM7	SOMATIC	CCDC6	RET	10	10	43609511	61629044	Intron of RET(+):388bp after exon 10	Intron of CCDC6(-):17Kb before exon 2		GRCh37	INVERSION	10	17	Protein Fusion: out of frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-16584:CCDC6_c.1879+388:RETinv	yes	unknown	18019533	108331	77800	0	22
P-0019489-T01-IM6	SOMATIC	CCND1	NUMA1	11	11	69458798	71719423	Intron of CCND1(+):39bp after exon 3	Intron of NUMA1(-):310bp after exon 20		GRCh37	DELETION	10	5	Antisense Fusion	PRECISE	3to5	CCND1 (NM_053056) rearrangement: c.574+39_g.71719423del	yes	unknown	2260625	34837	31127	0	5
P-0070083-T01-IM7	SOMATIC	CCND1	CCND1	11	11	14032263	69466011	Intron of SPON1(+):28Kb after exon 2	Exon 5 of CCND1(+)		GRCh37	INVERSION	10	65	CCND1-intragenic	PRECISE	5to5	CCND1 (NM_053056) rearrangement: c.849:CCND1_chr11:g.14032263inv	yes	unknown	55433748	239978	481603	0	75
P-0071050-T01-IM7	SOMATIC	CCND1	CCND1	11	11	63857094	69458455	Intron of MACROD1(-):62Kb after exon 3	Intron of CCND1(+):144bp before exon 3		GRCh37	DELETION	10	15	CCND1-intragenic	PRECISE	3to5	CCND1 (NM_053056) rearrangement: c.415-145:CCND1_chr11:g.63857094del	yes	unknown	5601361	90523	182535	0	15
P-0054214-T01-IM6	SOMATIC	CCND1	ACO1	11	9	69465854	32399624	Intron of CCND1(+):31bp before exon 5	5-UTR of ACO1(+):6Kb before coding start		GRCh37	TRANSLOCATION	10	47	Transcript Fusion {ACO1:CCND1}	PRECISE	5to3	CCND1 (NM_053056) rearrangement: t(9;11)(p21.1;q13.3)(chr9:g.32399624::chr11:g.69465854)	yes	unknown	0	0	0	0	47
P-0055462-T01-IM6	SOMATIC	CCND2	ETV6	12	12	4389859	12013636	Intron of CCND2(+):2Kb after exon 3	Intron of ETV6(+):7Kb after exon 4		GRCh37	INVERSION	10	10	Antisense Fusion	PRECISE	3to3	CCND2 (NM_001759) - ETV6 (NM_001987) rearrangement: c.571+1774:CCND2_c.463+7141:ETV6inv	yes	unknown	7623777	72479	52335	0	10
P-0031757-T01-IM6	SOMATIC	CCND2		12	12	4385517	5215914	Intron of CCND2(+):131bp after exon 2	IGR: 63Kb before KCNA5(+)		GRCh37	DELETION			CCND2-intragenic	PRECISE	3to5	CCND2 (NM_001759) rearrangement: c.411+131_chr12:g.5215914del			830397	7313	7009	0	36
P-0043234-T01-IM6	SOMATIC	CCND2	RAD51B	14	12	68610135	4388092	Intron of RAD51B(+):148Kb before exon 8	Intron of CCND2(+):7bp after exon 3		GRCh37	TRANSLOCATION	10	5	Protein Fusion: out of frame  {CCND2:RAD51B}	PRECISE	5to3	CCND2 (NM_001759) - RAD51B (NM_133509) rearrangement: t(12;14)(p13.32;q24.1)(chr12:g.4388092::chr14:g.68610135)	yes	unknown	0	0	0	0	5
P-0064711-T02-IM7	SOMATIC	CCND3	CCND3	8	6	114045689	41904405	Intron of CSMD3(-):14Kb before exon 6	Exon 4 of CCND3(-)		GRCh37	TRANSLOCATION	10	10	CCND3-intragenic	PRECISE	3to3	CCND3 (NM_001760) rearrangement: t(6;8)(p21.1;q23.3)(chr6:g.41904405::chr8:g.114045689)	yes	unknown	0	0	0	0	10
P-0064661-T01-IM7	SOMATIC	CCND3		6	6	41882488	41908466	Intron of MED20(-):2Kb after exon 2	Intron of CCND3(-):143bp before exon 2		GRCh37	INVERSION			CCND3-intragenic	IMPPRECISE	3to3	CCND3 (NM_001760) rearrangement: c.199-143:CCND3_chr6:g.41882488inv			25978	9423	17056	0	7
P-0072140-T01-IM7	SOMATIC	CCND3	DNAH8	6	6	38776913	41909164	Intron of DNAH8(+):1Kb after exon 24	Intron of CCND3(-):25bp after exon 1		GRCh37	INVERSION			Protein Fusion: out of frame  {CCND3:DNAH8}	IMPPRECISE	5to5	CCND3 (NM_001760) - DNAH8 (NM_001206927) rearrangement: c.198+26:CCND3_c.3257+1421:DNAH8inv			3132251	23551	30551	0	10
P-0024687-T01-IM6	SOMATIC	CCNE1	URI1	19	19	30313488	30433580	Exon 11 of CCNE1(+)	Intron of URI1(+):9bp after exon 1		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	CCNE1 (NM_001238) rearrangement: c.1088:CCNE1_chr19:g.30433580inv	yes	unknown	120092	2779	1495	0	10
P-0038760-T01-IM6	SOMATIC	CCNE1	MED13	19	17	30303878	60028049	Exon 4 of CCNE1(+)	Intron of MED13(-):136bp after exon 28		GRCh37	TRANSLOCATION	10	14	Antisense Fusion	PRECISE	3to5	CCNE1 (NM_001238) Rearrangement: t(17;19)(q23.2;q12)(chr17:g.60028049::chr19:g.30303878	yes	unknown	0	0	0	0	14
P-0067314-T01-IM7	SOMATIC	CCNE1		19	19	30312925	30314243	Exon 9 of CCNE1(+)	Intron of CCNE1(+):318bp before exon 12		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	CCNE1 (NM_001238) rearrangement: c.728_c.1111-319inv			1318	2750	4011	0	5
P-0032233-T01-IM6	SOMATIC	CCNE1		19	19	1441479	30313195	Promoter of RPS15(+):3Kb from tx start	Exon 10 of CCNE1(+)		GRCh37	INVERSION			CCNE1-intragenic	IMPPRECISE	5to5	CCNE1 (NM_001238) rearrangement: c.889:CCNE1_chr19:g.1441479inv			28871716	676529	781097	0	18
P-0034750-T01-IM6	SOMATIC	CCNE1		19	19	30308146	30915262	Exon 5 of CCNE1(+)	5-UTR of ZNF536(+):19Kb before coding start		GRCh37	INVERSION			CCNE1-intragenic	IMPPRECISE	5to5	CCNE1 (NM_001238) rearrangement: c.283:CCNE1_chr19:g.30915262inv			607116	11902	12348	0	6
P-0061957-T01-IM7	SOMATIC	CCNL2	NADK	1	1	1329716	1685992	Intron of CCNL2(-):876bp before exon 5	Exon 10 of NADK(-)		GRCh37	DELETION	10	24	Protein Fusion: mid-exon  {NADK:CCNL2}	PRECISE	3to5		yes	unknown	356276	8652	16087	0	24
P-0022197-T01-IM6	SOMATIC	CCT2	POLE	12	12	69993677	133219159	Exon 15 of CCT2(+)	Exon 37 of POLE(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {CCT2:POLE}	IMPPRECISE	3to3	CCT2 (NM_006431) - POLE (NM_006231) rearrangement: c.1470:CCT2_c.4885:POLEinv			63225482	183167	202858	0	76
P-0077710-T01-IM7	SOMATIC	CD274		9	8	5466319	14648217	Intron of CD274(+):450bp before exon 6	Intron of SGCZ(-):236Kb before exon 2		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to5	CD274 (NM_014143) rearrangement: t(8;9)(p22;p24.1)(chr8:g.14648217::chr9:g.5466319)			0	0	0	0	24
P-0048038-T01-IM6	SOMATIC	CD274	CD274	20	9	22314553	5463221	IGR: 54Kb before LINC01427(-)	Intron of CD274(+):100bp after exon 4		GRCh37	TRANSLOCATION	10	13	CD274-intragenic	PRECISE	3to3	CD274 (NM_014143) rearrangement: t(9;20)(p24.1;p11.21)(chr9:g.5463221::chr20:g.22314553)	yes	unknown	0	0	0	0	13
P-0047193-T02-IM6	SOMATIC	CD276	AEN	15	15	74003702	89160814	Intron of CD276(+):191bp after exon 9	IGR: 4Kb before AEN(+)		GRCh37	INVERSION	10	7	CD276-intragenic	PRECISE	3to3	CD276 (NM_001024736) rearrangement: c.1582+191:CD276_chr15:g.89160814inv	yes	unknown	15157112	37696	52391	0	7
P-0026652-T01-IM6	SOMATIC	CD276		16	15	85397630	73995403	IGR: 58Kb before MIR5093(-)	Exon 4 of CD276(+)		GRCh37	TRANSLOCATION			CD276-intragenic	PRECISE	5to5	CD276 (NM_001024736) Rearrangement : t(15,16)(q24.1,q24.1)(chr15:g.73995403::chr16:g.85397630)			0	0	0	0	39
P-0063653-T01-IM7	SOMATIC	CD276		15	15	35312853	73995051	IGR: 42Kb before ZNF770(-)	Intron of CD276(+):61bp before exon 4		GRCh37	INVERSION			CD276-intragenic	PRECISE	3to3	CD276 (NM_001024736) rearrangement: c.419-62:CD276_chr15:g.35312853inv			38682198	435389	335939	0	10
P-0077428-T02-IM7	SOMATIC	CD276	CD276	15	15	74000772	74004536	Exon 7 of CD276(+)	Intron of CD276(+):738bp before exon 10		GRCh37	DUPLICATION	4	2	Duplication within transcript : mid-exon	PRECISE	5to3	CD276 (NM_001024736) rearrangement: c.1462_c.1583-739dup	yes	unknown	3764	2111	1920	0	2
P-0033257-T01-IM6	SOMATIC	CD44	NRG1								GRCh37				CD44-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CD44-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes CD44 Exon5 (NM_000610) and NRG1 Exon2 (NM_004495).	yes	unknown					
P-0056652-T02-IM6	SOMATIC	CD47	MET								GRCh37				CD47-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CD47-MET fusion. Note: The rearrangement is an in-frame fusion between genes CD47 Exon7 (NM_001777) and MET Exon15 (NM_000245).	yes	unknown					
P-0056652-T02-IM6	SOMATIC	CD47	MET	7	3	116414583	107771293	Intron of MET(+):351bp before exon 15	Intron of CD47(-):476bp before exon 8		GRCh37	TRANSLOCATION	0	7	Protein Fusion: in frame  {CD47:MET}	IMPPRECISE	5to5	CD47 (NM_001777) - MET (NM_000245) fusion: t(3;7)(q13.12;q31.2)(chr3:g.107771293::chr7:g.116414583)	yes	unknown	0	0	0	0	8
P-0028941-T01-IM6	SOMATIC	CD58	VTCN1	1	1	117085900	117699251	Intron of CD58(-):1Kb after exon 2	Exon 3 of VTCN1(-)		GRCh37	DUPLICATION	10	2	Protein Fusion: mid-exon  {CD58:VTCN1}	PRECISE	5to3	CD58 (NM_001779) - VTCN1 (NM_024626) rearrangement: c.364+1033:CD58_c.390:VTCN1dup	yes	unknown	613351	3761	7522	0	5
P-0021671-T01-IM6	SOMATIC	CD74	ROS1	6	5	117657267	149783453	Intron of ROS1(-):1Kb after exon 31	Intron of CD74(-):578bp before exon 7		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	CD74 (NM_001025159) - ROS1 (NM_002944) rearrangement: t(5,6)(q33.1,q22.1)(chr5:g.149783453::chr6:g.117657267)			0	0	0	0	24
P-0057895-T01-IM6	SOMATIC	CD74	CD74	5	5	149785692	149796111	Intron of CD74(-):129bp after exon 4	IGR: 15Kb before CD74(-)		GRCh37	DUPLICATION	10	33	CD74-intragenic	PRECISE	5to3	CD74 (NM_001025159) rearrangement: c.441+130:CD74_chr5:g.149796111dup	yes	unknown	10419	712	941	0	34
P-0022372-T01-IM6	SOMATIC	CD74	NBPF10	5	1	149782962	145430829	Intron of CD74(-):87bp before exon 7	Intron of NBPF20(+):66Kb after exon 99		GRCh37	TRANSLOCATION			CD74-NBPF10 Fusion	PRECISE	3to5	CD74 (NM_001025159) - NBPF10 (NM_001039703) rearrangement: t(1;5)(q21.1;q32)(chr1:g.145430829::chr5:g.149782962)			0	0	0	0	10
P-0023476-T01-IM6	SOMATIC	CD74	NRG1								GRCh37				CD74-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CD74-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_004355) and NRG1 Exon6 (NM_004495).	yes	unknown					
P-0032788-T02-IM6	SOMATIC	CD74	NRG1								GRCh37				CD74-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CD74-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_004355) and NRG1 Exon6 (NM_004495).	yes	unknown					
P-0024572-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0040577-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0065104-T01-IM7	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0061435-T02-IM7	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0027196-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0036970-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_004355) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0021671-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_001025159) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0049640-T01-IM6	SOMATIC	CD74	ROS1								GRCh37				CD74-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: CD74-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes CD74 Exon6 (NM_004355) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0065342-T03-IM7	SOMATIC	CD74		5	5	149782188	149784243	Exon 8 of CD74(-)	Exon 6 of CD74(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CD74 (NM_001025159) rearrangement: c.625_c.818del			2055	3935	11465	0	13
P-0058867-T01-IM7	SOMATIC	CD74	NRG1	8	5	32565439	149783529	Intron of NRG1(+):20Kb before exon 6	Intron of CD74(-):654bp before exon 7		GRCh37	TRANSLOCATION	10	19	Protein Fusion: in frame  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783529::chr8:g.32565439)	yes	unknown	0	0	0	0	25
P-0058935-T02-IM7	SOMATIC	CD74	NRG1	8	5	32574604	149783327	Intron of NRG1(+):11Kb before exon 6	Intron of CD74(-):452bp before exon 7		GRCh37	TRANSLOCATION	10	11	Protein Fusion: in frame  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) fusion: t(5;8)(q32;p12)(chr5:g.149783327::chr8:g.32574604)	yes	unknown	0	0	0	0	11
P-0060522-T01-IM7	SOMATIC	CD74	NRG1	8	5	32570123	149783541	Intron of NRG1(+):15Kb before exon 6	Intron of CD74(-):666bp before exon 7		GRCh37	TRANSLOCATION	10	66	Protein Fusion: in frame  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783541::chr8:g.32570123)	yes	unknown	0	0	0	0	75
P-0064608-T02-IM7	SOMATIC	CD74	NRG1	8	5	32539347	149783651	Intron of NRG1(+):46Kb before exon 6	Intron of CD74(-):591bp after exon 6		GRCh37	TRANSLOCATION	10	30	Protein Fusion: in frame  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783651::chr8:g.32539347)	yes	unknown	0	0	0	0	32
P-0079058-T01-IM7	SOMATIC	CD74	NRG1	8	5	32531631	149783336	Intron of NRG1(+):54Kb before exon 6	Intron of CD74(-):461bp before exon 7		GRCh37	TRANSLOCATION	7	8	Protein Fusion: in frame  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783336::chr8:g.32531631)	yes	unknown	0	0	0	0	8
P-0047502-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646405	149782474	Intron of ROS1(-):827bp before exon 34	Intron of CD74(-):209bp after exon 7		GRCh37	TRANSLOCATION	0	29	Protein Fusion: in frame  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782474::chr6:g.117646405)	yes	unknown	0	0	0	0	28
P-0048671-T01-IM6	SOMATIC	CD74	ROS1	6	5	117647250	149783869	Intron of ROS1(-):136bp after exon 33	Intron of CD74(-):373bp after exon 6		GRCh37	TRANSLOCATION	10	153	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783869::chr6:g.117647250)	yes	unknown	0	0	0	0	156
P-0052363-T01-IM6	SOMATIC	CD74	ROS1	6	5	117647256	149783692	Intron of ROS1(-):130bp after exon 33	Intron of CD74(-):550bp after exon 6		GRCh37	TRANSLOCATION	10	156	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783692::chr6:g.117647256)	yes	unknown	0	0	0	0	161
P-0053610-T02-IM6	SOMATIC	CD74	ROS1	6	5	117646450	149782626	Intron of ROS1(-):872bp before exon 34	Intron of CD74(-):57bp after exon 7		GRCh37	TRANSLOCATION	0	5	Protein Fusion: in frame  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782626::chr6:g.117646450)	yes	unknown	0	0	0	0	5
P-0054440-T02-IM6	SOMATIC	CD74	ROS1	6	5	117646088	149782403	Intron of ROS1(-):510bp before exon 34	Intron of CD74(-):215bp before exon 8		GRCh37	TRANSLOCATION	0	5	Protein Fusion: in frame  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782403::chr6:g.117646088)	yes	unknown	0	0	0	0	5
P-0044465-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646909	149783638	Intron of ROS1(-):477bp after exon 33	Intron of CD74(-):604bp after exon 6		GRCh37	TRANSLOCATION	10	81	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783638::chr6:g.117646909)	yes	unknown	0	0	0	0	81
P-0026455-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646566	149783651	Intron of ROS1(-):820bp after exon 33	Intron of CD74(-):591bp after exon 6		GRCh37	TRANSLOCATION	10	50	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783651::chr6:g.117646566)	yes	unknown	0	0	0	0	52
P-0039219-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646339	149783535	Intron of ROS1(-):761bp before exon 34	Intron of CD74(-):660bp before exon 7		GRCh37	TRANSLOCATION	10	156	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783535::chr6:g.117646339)	yes	unknown	0	0	0	0	159
P-0070270-T01-IM7	SOMATIC	CD74	ROS1	6	5	117647241	149783256	Intron of ROS1(-):145bp after exon 33	Intron of CD74(-):381bp before exon 7		GRCh37	TRANSLOCATION	10	15	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783256::chr6:g.117647241)	yes	unknown	0	0	0	0	18
P-0057384-T03-IM7	SOMATIC	CD74	ROS1	6	5	117645913	149782371	Intron of ROS1(-):335bp before exon 34	Intron of CD74(-):183bp before exon 8		GRCh37	TRANSLOCATION	10	327	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782371::chr6:g.117645913)	yes	unknown	0	0	0	0	370
P-0078731-T01-IM7	SOMATIC	CD74	ROS1	6	5	117646688	149783553	Intron of ROS1(-):698bp after exon 33	Intron of CD74(-):678bp before exon 7		GRCh37	TRANSLOCATION	10	165	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783553::chr6:g.117646688)	yes	unknown	0	0	0	0	176
P-0076666-T03-IM7	SOMATIC	CD74	ROS1	6	5	117647374	149783443	Intron of ROS1(-):12bp after exon 33	Intron of CD74(-):568bp before exon 7		GRCh37	TRANSLOCATION	10	34	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783443::chr6:g.117647374)	yes	unknown	0	0	0	0	35
P-0011025-T01-IM5	SOMATIC	CD74	ROS1	6	5	117645889	149783755	Intron of ROS1(-): 311bp before exon 34	Intron of CD74(-): 488bp after exon 6		GRCh37	TRANSLOCATION	36	67	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 34-43) : t(5;6)(q32;q22.1)(chr5:g.149783755::chr6:g.117645889)	yes	unknown	0	0	0	0	65
P-0019346-T01-IM6	SOMATIC	CD74	NRG1	8	5	32584466	149782781	Intron of NRG1(+):1Kb before exon 6	Exon 7 of CD74(-)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {CD74:NRG1}	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) fusion (CD74 exons 1-7 fused with NRG1 exons 6-13) : t(5;8)(q32;p12)(chr5:g.149782781::chr8:g.32584466)			0	0	0	0	7
P-0041118-T02-IM6	SOMATIC	CD74	ROS1	6	5	117647424	149782265	Exon 33 of ROS1(-)	Intron of CD74(-):77bp before exon 8		GRCh37	TRANSLOCATION	10	61	Protein Fusion: mid-exon  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782265::chr6:g.117647424)	yes	unknown	0	0	0	0	59
P-0072892-T02-IM7	SOMATIC	CD74	ROS1	6	5	117647489	149783277	Exon 33 of ROS1(-)	Intron of CD74(-):402bp before exon 7		GRCh37	TRANSLOCATION	10	44	Protein Fusion: mid-exon  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783277::chr6:g.117647489)	yes	unknown	0	0	0	0	62
P-0083124-T03-IM7	SOMATIC	CD74	ROS1	6	5	117658370	149784065	Exon 31 of ROS1(-)	Intron of CD74(-):177bp after exon 6		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149784065::chr6:g.117658370)			0	0	0	0	13
P-0014506-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650623	149782871	Intron of ROS1(-): 14bp before exon 32	Exon 7 of CD74(-)		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 32-43): t(5;6)(q32;q22.1)(chr5:g.149782871::chr6:g.117650623)			0	0	0	0	79
P-0054352-T01-IM6	SOMATIC	CD74	ROS1	6	5	117649394	149783536	Intron of ROS1(-):1Kb after exon 32	Intron of CD74(-):661bp before exon 7		GRCh37	TRANSLOCATION	10	73	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783536::chr6:g.117649394)	yes	unknown	0	0	0	0	74
P-0054497-T01-IM6	SOMATIC	CD74	ROS1	6	5	117659373	149783252	Intron of ROS1(-):870bp before exon 31	Intron of CD74(-):377bp before exon 7		GRCh37	TRANSLOCATION	0	9	Protein Fusion: out of frame  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783252::chr6:g.117659373)	yes	unknown	0	0	0	0	15
P-0040577-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650159	149783441	Intron of ROS1(-):332bp after exon 32	Intron of CD74(-):566bp before exon 7		GRCh37	TRANSLOCATION	10	54	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 32-43) : t(5;6)(q32;q22.1)(chr5:g.149783441::chr6:g.117650159)	yes	unknown	0	0	0	0	53
P-0024572-T01-IM6	SOMATIC	CD74	ROS1	6	5	117649758	149783583	Intron of ROS1(-):733bp after exon 32	Intron of CD74(-):659bp after exon 6		GRCh37	TRANSLOCATION	10	142	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion( CD74 exons 1-6 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149783583::chr6:g.117649758)	yes	unknown	0	0	0	0	149
P-0071315-T01-IM7	SOMATIC	CD74	ROS1	6	5	117649548	149783082	Intron of ROS1(-):943bp after exon 32	Intron of CD74(-):207bp before exon 7		GRCh37	TRANSLOCATION	10	40	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783082::chr6:g.117649548)	yes	unknown	0	0	0	0	40
P-0074389-T03-IM7	SOMATIC	CD74	ROS1	6	5	117649834	149783453	Intron of ROS1(-):657bp after exon 32	Intron of CD74(-):578bp before exon 7		GRCh37	TRANSLOCATION	0	55	Protein Fusion: out of frame  {CD74:ROS1}	IMPPRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783453::chr6:g.117649834)	yes	unknown	0	0	0	0	56
P-0077532-T01-IM7	SOMATIC	CD74	ROS1	6	5	117649509	149783459	Intron of ROS1(-):982bp after exon 32	Intron of CD74(-):584bp before exon 7		GRCh37	TRANSLOCATION	10	244	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783459::chr6:g.117649509)	yes	unknown	0	0	0	0	266
P-0027196-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650377	149782321	Intron of ROS1(-):114bp after exon 32	Intron of CD74(-):133bp before exon 8		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149782321::chr6:g.117650377)			0	0	0	0	40
P-0036970-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650273	149783480	Intron of ROS1(-):218bp after exon 32	Intron of CD74(-):605bp before exon 7		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q33.1;q22.1)(chr5:g.149783480::chr6:g.117650273)			0	0	0	3	309
P-0049640-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650417	149782214	Intron of ROS1(-):74bp after exon 32	Intron of CD74(-):26bp before exon 8		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782214::chr6:g.117650417)			0	0	0	0	16
P-0084841-T01-IM7	SOMATIC	CD74	ROS1	6	5	117649159	149783247	Intron of ROS1(-):1Kb after exon 32	Intron of CD74(-):372bp before exon 7		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783247::chr6:g.117649159)			0	0	0	0	42
P-0086800-T02-IM7	SOMATIC	CD74	ROS1	6	5	117649758	149783547	Intron of ROS1(-):733bp after exon 32	Intron of CD74(-):672bp before exon 7		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783547::chr6:g.117649758)			0	0	0	0	62
P-0016692-T01-IM6	SOMATIC	CD79A		19	19	42385015	42777278	Exon 5 of CD79A(+)	IGR: 12Kb before CIC(+)		GRCh37	DELETION			CD79A-intragenic	IMPPRECISE	3to5	CD79A (NM_001783) rearrangement: c.649:CD79A_chr19:g.42777278del			392263	26802	37372	0	14
P-0029357-T02-IM6	SOMATIC	CD79A		19	19	42173020	42383325	IGR: 4Kb before CEACAM7(-)	Exon 2 of CD79A(+)		GRCh37	DUPLICATION			CD79A-intragenic	PRECISE	5to3	CD79A (NM_001783) Rearrangement: c.345:CD79A_chr19:g.42173020dup			210305	3431	4578	0	4
P-0070393-T01-IM7	SOMATIC	CD79A	CD79A	19	19	42381609	42383651	Intron of CD79A(+):156bp after exon 1	Exon 3 of CD79A(+)		GRCh37	DELETION	0	16	Deletion within transcript : mid-exon	IMPPRECISE	3to5	CD79A (NM_001783) rearrangement: c.79+156_c.426del	yes	unknown	2042	2327	1767	0	16
P-0036010-T01-IM6	SOMATIC	CD79A	ZNF83	19	19	42383219	53184525	Exon 2 of CD79A(+)	5-UTR of ZNF83(-):68Kb before coding start		GRCh37	INVERSION	0	10	Protein Fusion: mid-exon  {ZNF83:CD79A}	IMPPRECISE	5to5	CD79A (NM_001783) - ZNF83 (NM_018300) Rearrangement : c.239:CD79A_c.-658+9171:ZNF83inv	yes	unknown	10801306	236322	195729	0	10
P-0019473-T01-IM6	SOMATIC	CD79A	MRPL36	19	5	42384823	1795958	Intron of CD79A(+):18bp after exon 4	Promoter of MRPL36(-):3Kb from tx start		GRCh37	TRANSLOCATION	0	12	Transcript Fusion {CD79A:MRPL36}	IMPPRECISE	3to3	CD79A (NM_001783) - MRPL36 (NM_032479) Rearrangement : t(5,19)(p15.33,q13.2)(chr5:g.1795958::chr19:g.42384823)	yes	unknown	0	0	0	0	12
P-0008856-T01-IM5	SOMATIC	CD79B		17	17	32525586	62007420	IGR: 57Kb before CCL2(+)	Intron of CD79B(-): 14bp after exon 3		GRCh37	DELETION			CD79B-intragenic	PRECISE	3to5	CD79B (NM_001039933) rearrangement: chr17:g.32525586_c.433+14:CD79Bdel			29481834	827216	1027149	0	62
P-0052218-T01-IM6	SOMATIC	CD79B		17	17	62009388	62012332	Intron of CD79B(-):166bp after exon 1	Promoter of CD79B(-):6Kb from tx start		GRCh37	DUPLICATION			Duplication within transcript	PRECISE	5to3	CD79B (NM_001039933) rearrangement: c.67+167:CD79B_chr17:g.62012332dup			2944	2855	2360	0	21
P-0057341-T01-IM6	SOMATIC	CDC27	RARA	17	17	38506060	45254151	Exon 4 of RARA(+)	Intron of CDC27(-):5Kb after exon 2		GRCh37	INVERSION	10	77	Protein Fusion: mid-exon  {CDC27:RARA}	PRECISE	5to5	CDC27 (NM_001114091) - RARA (NM_000964) rearrangement: c.104-4721:CDC27_c.352:RARAinv	yes	unknown	6748091	215941	330974	0	93
P-0049330-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193104124	193104698	Intron of CDC73(+):396bp before exon 4	Exon 5 of CDC73(+)		GRCh37	INVERSION	0	15	Antisense Fusion	IMPPRECISE	3to3	CDC73 (NM_024529) rearrangement: c.308-397_c.402inv	yes	unknown	574	1209	1395	0	15
P-0054844-T01-IM6	SOMATIC	CDC73	CDC73	1	1	170817166	193181324	IGR: 87Kb before MROH9(+)	Intron of CDC73(+):94bp after exon 12		GRCh37	INVERSION	10	17	CDC73-intragenic	PRECISE	3to3	CDC73 (NM_024529) rearrangement: c.1066+94:CDC73_chr1:g.170817166inv	yes	unknown	22364158	64350	67911	0	16
P-0059287-T01-IM7	SOMATIC	CDC73	LINC01031	1	1	193181288	193298315	Intron of CDC73(+):58bp after exon 12	5-UTR of LINC01031(+):37Kb before coding start		GRCh37	INVERSION	10	21	CDC73-intragenic	PRECISE	5to5	CDC73 (NM_024529) rearrangement: c.1066+58:CDC73_chr1:g.193298315inv	yes	unknown	117027	5895	9581	0	21
P-0073197-T01-IM7	SOMATIC	CDC73	CDC73	1	1	193094179	193120271	Intron of CDC73(+):62bp before exon 2	Intron of CDC73(+):759bp after exon 9		GRCh37	INVERSION	10	29	CDC73-intragenic	PRECISE	5to5	CDC73 (NM_024529) rearrangement: c.132-63_c.907+759inv	yes	unknown	26092	7596	12078	0	29
P-0063042-T01-IM7	SOMATIC	CDC73	CDC73	1	1	193064518	193219802	Promoter of GLRX2(-):1Kb from tx start	Intron of CDC73(+):3bp before exon 17		GRCh37	DELETION	7	6	CDC73-intragenic	PRECISE	3to5	CDC73 (NM_024529) rearrangement: c.1560-4:CDC73_chr1:g.193064518del	yes	unknown	155284	17650	28061	0	6
P-0011201-T01-IM5	SOMATIC	CDC73		1	1	192828282	193121528	IGR: 50Kb before RGS2(+)	Exon 10 of CDC73(+)		GRCh37	DELETION			CDC73-intragenic	PRECISE	3to5	CDC73 (NM_024529) rearrangement : c.926_chr1:192828282del			293246	16777	14999	0	11
P-0053138-T01-IM6	SOMATIC	CDC73		1	1	193077325	193119332	Promoter of GLRX2(-):12Kb from tx start	Intron of CDC73(+):101bp before exon 9		GRCh37	DELETION			CDC73-intragenic	PRECISE	3to5	CDC73 (NM_024529) rearrangement: c.829-102:CDC73_chr1:g.193077325del			42007	5961	6008	0	21
P-0020926-T01-IM6	SOMATIC	CDC73	RAMP3	7	1	45238072	193218905	IGR: 41Kb before RAMP3(+)	Exon 16 of CDC73(+)		GRCh37	TRANSLOCATION			CDC73-RAMP3 Fusion	PRECISE	3to5	CDC73 (NM_024529) - RAMP3 (NM_005856) rearrangement: t(1,7)(q31.2,p13)(chr1:g.193218905::chr7:g.45238072)			0	0	0	0	11
P-0076181-T01-IM7	SOMATIC	CDC73	THRAP3	1	1	36750325	193121696	Intron of THRAP3(+):2Kb before exon 4	Intron of CDC73(+):122bp after exon 10		GRCh37	DUPLICATION	10	61	Protein Fusion: out of frame  {CDC73:THRAP3}	PRECISE	5to3	CDC73 (NM_024529) - THRAP3 (NM_005119) rearrangement: c.972+122:CDC73_c.138-1644:THRAP3dup	yes	unknown	156371371	1037052	980229	0	65
P-0024592-T01-IM6	SOMATIC	CDH1	TANGO6	16	16	68857540	68922031	Intron of CDH1(+):11bp after exon 13	Intron of TANGO6(+):7Kb after exon 7		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	3to3	CDH1 (NM_004360) rearrangement: c.1981+11:CDH1_chr16:g.68922031inv	yes	unknown	64491	4564	3335	0	14
P-0024666-T01-IM6	SOMATIC	CDH1	TESK2	16	1	68846063	45867214	Exon 8 of CDH1(+)	Intron of TESK2(-):16Kb before exon 4		GRCh37	TRANSLOCATION	10	38	Antisense Fusion	PRECISE	3to5	CDH1 (NM_004360) rearrangement: t(1;16)(p34.1;q22.1)(chr1:g.45867214::chr16:g.68846063)	yes	unknown	0	0	0	0	41
P-0031274-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68771478	68813254	Intron of CDH1(+):112bp after exon 1	Intron of CDH1(+):22Kb before exon 3		GRCh37	INVERSION	0	5	Antisense Fusion	IMPPRECISE	3to3	CDH1 (NM_004360) rearrangement: c.48+112_c.164-22319inv	yes	unknown	41776	1924	2827	0	5
P-0064778-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68861155	68863895	Intron of CDH1(+):921bp before exon 14	Intron of CDH1(+):195bp after exon 15		GRCh37	INVERSION	9	8	Antisense Fusion	PRECISE	3to3	CDH1 (NM_004360) rearrangement: c.2165-922_c.2439+195inv	yes	unknown	2740	4362	2670	0	11
P-0073670-T01-IM7	SOMATIC	CDH1		16	16	68771535	68776950	Intron of CDH1(+):169bp after exon 1	Intron of CDH1(+):5Kb after exon 2		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	CDH1 (NM_004360) rearrangement: c.48+169_c.163+4636inv			5415	871	2413	0	10
P-0052415-T01-IM6	SOMATIC	CDH1	HLA-DPB2	16	6	68867274	33066112	Exon 16 of CDH1(+)	IGR: 14Kb before HLA-DPB2(+)		GRCh37	TRANSLOCATION	10	29	CDH1-intragenic	PRECISE	3to3	CDH1 (NM_004360) rearrangement: t(6;16)(p21.32;q22.1)(chr6:g.33066112::chr16:g.68867274)	yes	unknown	0	0	0	0	32
P-0055320-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68762435	68855940	IGR: 9Kb before CDH1(+)	Exon 12 of CDH1(+)		GRCh37	DELETION	10	15	CDH1-intragenic	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.1748:CDH1_chr16:g.68762435del	yes	unknown	93505	24104	10244	0	18
P-0009703-T01-IM5	SOMATIC	CDH1		16	16	68664883	68861965	IGR: 13Kb before CDH3(+)	Intron of CDH1(+): 112bp before exon 14		GRCh37	DELETION			CDH1-intragenic	PRECISE	3to5	CDH1 (NM_004360) Rearrangement :   chr16:g.68664883_ c.2165-112:CDH1del			197082	44369	35786	0	10
P-0027731-T01-IM6	SOMATIC	CDH1		16	16	68849530	68971469	Exon 10 of CDH1(+)	Intron of TANGO6(+):7Kb after exon 14		GRCh37	INVERSION			CDH1-intragenic	PRECISE	5to5	CDH1 (NM_004360) rearrangement: c.1433:CDH1_chr16:g.68971469inv			121939	8265	10984	0	19
P-0035226-T01-IM6	SOMATIC	CDH1		16	16	68867268	68868038	Exon 16 of CDH1(+)	3-UTR of CDH1(+):97Kb after coding stop		GRCh37	INVERSION			CDH1-intragenic	PRECISE	5to5	CDH1 (NM_004360) rearrangement: c.2515_c.*636inv			770	714	1116	0	30
P-0054455-T01-IM6	SOMATIC	CDH1		16	16	68842738	74366311	Exon 5 of CDH1(+)	3-UTR of LOC283922(-):36Kb after coding stop		GRCh37	DELETION			CDH1-intragenic	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.674:CDH1_chr16:g.74366311del			5523573	106115	134738	0	37
P-0072890-T02-IM7	SOMATIC	CDH1		16	16	68766355	68835554	IGR: 5Kb before CDH1(+)	Intron of CDH1(+):18bp before exon 3		GRCh37	DELETION			CDH1-intragenic	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.164-19:CDH1_chr16:g.68766355del			69199	5101	2054	0	55
P-0086456-T02-IM7	SOMATIC	CDH1		16	8	68842291	18323768	Intron of CDH1(+):35bp before exon 4	IGR: 61Kb before PSD3(-)		GRCh37	TRANSLOCATION			CDH1-intragenic	IMPPRECISE	5to5	CDH1 (NM_004360) rearrangement: t(8;16)(p22;q22.1)(chr8:g.18323768::chr16:g.68842291)			0	0	0	0	19
P-0049316-T01-IM7	SOMATIC	CDH1		16	16	68411800	68771320	5-UTR of SMPD3(-):17Kb before coding start	Exon 1 of CDH1(+)		GRCh37	DELETION			CDH1-intragenic	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.2:CDH1_chr16:g.68411800del			359520	3323	2512	0	33
P-0019958-T01-IM6	SOMATIC	CDH1	CHTF8	16	16	68772356	69159056	Intron of CDH1(+):42bp after exon 2	3-UTR of CHTF8(-):7Kb after coding stop		GRCh37	DELETION	10	18	CHTF8-CDH1 fusion	PRECISE	3to5	CDH1 (NM_004360) - CHTF8 (NM_001040146) rearrangement: c.163+42:CDH1_c.-35-3660:CHTF8del	yes	unknown	386700	34021	24464	0	18
P-0087994-T02-IM7	SOMATIC	CDH1		16	16	68847688	68851225	Intron of CDH1(+):290bp after exon 9	Intron of CDH1(+):2Kb after exon 10		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.1320+290_c.1565+1563del			3537	2517	530	0	35
P-0015618-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68842104	68844025	Intron of CDH1(+): 223bp before exon 4	Intron of CDH1(+): 75bp before exon 6		GRCh37	DELETION	40	48	Deletion of 2 exons: in frame	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.388-223_c.688-75del	yes	unknown	1921	5815	3722	0	43
P-0023159-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68830580	68845627	Intron of CDH1(+):5Kb before exon 3	Exon 7 of CDH1(+)		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	CDH1 (NM_004360) Rearrangement : c.164-4993_c.873del	yes	unknown	15047	9547	7684	0	21
P-0025558-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68840820	68842373	Intron of CDH1(+):2Kb before exon 4	Exon 4 of CDH1(+)		GRCh37	DELETION	10	22	Deletion within transcript : mid-exon	PRECISE	3to5	CDH1(NM_004360) Rearrangement : c.388-1507_c.434del	yes	unknown	1553	685	840	0	22
P-0033490-T02-IM6	SOMATIC	CDH1	CDH1	16	16	68772218	68772870	Exon 2 of CDH1(+)	Intron of CDH1(+):556bp after exon 2		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	CDH1 (NM_004360) Rearrangement : c.67_c.163+556del	yes	unknown	652	1755	328	0	11
P-0034683-T01-IM6	SOMATIC	CDH1		16	16	68772243	68816731	Exon 2 of CDH1(+)	Intron of CDH1(+):19Kb before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CDH1 (NM_004360) Rearrangement : c.92_c.164-18842del			44488	1270	1381	0	111
P-0009469-T01-IM5	SOMATIC	CDH1	CDH1	16	16	68835712	68837807	Exon 3 of CDH1(+)	Intron of CDH1(+): 2Kb after exon 3		GRCh37	DELETION	26	7	Deletion within transcript: mid-exon	PRECISE	3to5	CDH1 (NM_004360) Rearrangement : c.303_387+2011del	yes	unknown	2095	628	610	0	7
P-0015034-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68857495	68861543	Exon 13 of CDH1(+)	Intron of CDH1(+): 534bp before exon 14		GRCh37	DELETION	79	102	Deletion within transcript: mid-exon	PRECISE	3to5	CDH1 (NM_004360) rearrangement: c.2130_c.2165-534del	yes	unknown	4048	192	189	0	115
P-0062685-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68835350	68850243	Intron of CDH1(+):222bp before exon 3	Intron of CDH1(+):581bp after exon 10		GRCh37	DUPLICATION	10	60	Duplication of 8 exons : out of frame	PRECISE	5to3	CDH1 (NM_004360) rearrangement: c.164-223_c.1565+581dup	yes	unknown	14893	13877	28467	0	83
P-0030480-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68846094	68847287	Exon 8 of CDH1(+)	Exon 9 of CDH1(+)		GRCh37	DUPLICATION	10	44	Duplication within transcript : mid-exon	PRECISE	5to3	CDH1 (NM_004360) Rearrangement: c.1065_c.1209dup	yes	unknown	1193	1602	2994	0	45
P-0069051-T01-IM7	SOMATIC	CDH1	HCRTR2	16	6	68867348	55038872	Exon 16 of CDH1(+)	Promoter of HCRTR2(+):198bp from tx start		GRCh37	TRANSLOCATION	10	9	Protein Fusion: mid-exon  {CDH1:HCRTR2}	PRECISE	3to5	CDH1 (NM_004360) rearrangement: t(6;16)(p12.1;q22.1)(chr6:g.55038872::chr16:g.68867348)	yes	unknown	0	0	0	0	9
P-0023119-T01-IM6	SOMATIC	CDH1	RAD21	16	8	68852231	117864146	Intron of CDH1(+):951bp before exon 11	Intron of RAD21(-):40bp after exon 11		GRCh37	TRANSLOCATION	10	5	Protein Fusion: out of frame  {RAD21:CDH1}	PRECISE	5to5	RAD21 (NM_006265) - CDH1 (NM_004360) rearrangement: t(8;16)(q24.11;q22.1)(chr8:g.117864146::chr16:g.68852231)	yes	unknown	0	0	0	0	5
P-0065276-T02-IM7	SOMATIC	CDH1	TANGO6	16	16	68849315	68904957	Intron of CDH1(+):102bp before exon 10	Intron of TANGO6(+):4Kb after exon 4		GRCh37	DUPLICATION	10	12	Protein Fusion: out of frame  {TANGO6:CDH1}	PRECISE	5to3	CDH1 (NM_004360) rearrangement: c.1321-103:CDH1_chr16:g.68904957dup	yes	unknown	55642	12546	20012	0	29
P-0039125-T01-IM6	SOMATIC	CDH1	CDH1	19	16	23234910	68862050	Promoter of LOC101929144(-):3Kb from tx start	Intron of CDH1(+):26bp before exon 14		GRCh37	TRANSLOCATION	10	22	Transcript Fusion {LOC101929144:CDH1}	PRECISE	5to5	CDH1 (NM_004360) rearrangement: t(16;19)(q22.1;p12)(chr16:g.68862050::chr19:g.23234910)	yes	unknown	0	0	0	0	25
P-0038990-T01-IM6	SOMATIC	CDH3	CDH1	16	16	68703528	68835524	Intron of CDH3(+):7Kb before exon 3	Intron of CDH1(+):48bp before exon 3		GRCh37	DELETION	0	5	Protein Fusion: in frame  {CDH3:CDH1}	IMPPRECISE	3to5	CDH3 (NM_001793) - CDH1 (NM_004360) rearrangement: c.161-6760:CDH3_c.164-49:CDH1del	yes	unknown	131996	3316	4061	0	5
P-0025841-T01-IM6	SOMATIC	CDHR3	KMT2C	7	7	105612673	151873813	Intron of CDHR3(+):3Kb before exon 2	Exon 38 of KMT2C(-)		GRCh37	DELETION	10	31	Antisense Fusion	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.8725:KMT2C_chr7:g.105612673del	yes	unknown	46261140	336514	488400	0	32
P-0007587-T01-IM5	SOMATIC	CDK12	RARA	17	17	37646889	38492466	Exon 3 of CDK12(+)	Intron of RARA(+): 5Kb after exon 2		GRCh37	INVERSION	10	6	Antisense fusion	PRECISE	3to3	CDK12 (NM_016507) RARA (NM_000964) rearrangement: c.2011:CDK12_c.178+4818:RARAinv	yes	unknown	845577	108310	119557	0	6
P-0053728-T01-IM6	SOMATIC	CDK12	CDK12	17	17	36536924	37687007	Intron of SOCS7(+):3Kb after exon 7	Exon 14 of CDK12(+)		GRCh37	INVERSION	10	68	Antisense Fusion	PRECISE	3to3	CDK12 (NM_016507) rearrangement: c.3911:CDK12_chr17:g.36536924inv	yes	unknown	1150083	22365	56723	0	68
P-0088078-T01-IM7	SOMATIC	CDK12		17	17	37628004	37649742	Exon 2 of CDK12(+)	Intron of CDK12(+):599bp after exon 4		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	CDK12 (NM_016507) rearrangement: c.1919_c.2248+599inv			21738	3215	6528	0	19
P-0013831-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37597504	37627386	Intron of MED1(-): 574bp before exon 4	Exon 2 of CDK12(+)		GRCh37	DELETION	40	25	CDK12-intragenic	PRECISE	3to5	CDK12 (NM_016507) rearrangement: chr17:g.37597504_c.1301:CDK12del	yes	unknown	29882	13536	15214	0	24
P-0021839-T01-IM6	SOMATIC	CDK12	FOXK1	17	7	37681073	4787537	Exon 12 of CDK12(+)	Intron of FOXK1(+):7Kb before exon 3		GRCh37	TRANSLOCATION	10	11	CDK12-intragenic	PRECISE	5to5	CDK12 (NM_016507) Rearrangement : t(7,17)(p22.1,q12)(chr7:g.4787537::chr17:g.37681073)	yes	unknown	0	0	0	0	15
P-0064624-T01-IM7	SOMATIC	CDK12	MEOX1	17	17	37682364	41765607	Exon 13 of CDK12(+)	IGR: 48Kb before MEOX1(-)		GRCh37	INVERSION	10	179	CDK12-intragenic	PRECISE	3to3	CDK12 (NM_016507) rearrangement: c.3555:CDK12_chr17:g.41765607inv	yes	unknown	4083243	352654	656342	0	178
P-0076064-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37683850	37687403	Intron of CDK12(+):1Kb after exon 13	Exon 14 of CDK12(+)		GRCh37	INVERSION	0	375	CDK12-intragenic	IMPPRECISE	5to5	CDK12 (NM_016507) rearrangement: c.3760+1281_c.4307inv	yes	unknown	3553	1743	4536	0	703
P-0017656-T01-IM5	SOMATIC	CDK12		17	17	30096337	37619078	IGR: 83Kb before COPRS(-)	Exon 1 of CDK12(+)		GRCh37	INVERSION			CDK12-intragenic	PRECISE	5to5	CDK12 (NM_016507) rearrangement : g.30096337_c.754:CDK12inv			7522741	42021	63899	0	11
P-0024741-T01-IM6	SOMATIC	CDK12		17	8	37627932	78247787	Exon 2 of CDK12(+)	IGR: 115Kb before LOC102724874(+)		GRCh37	TRANSLOCATION			CDK12-intragenic	PRECISE	3to5	CDK12 (NM_016507) rearrangement: t(8;17)(q21.11;q12)(chr8:g.78247787::chr17:g.37627932)			0	0	0	0	84
P-0025401-T01-IM6	SOMATIC	CDK12		17	17	37627700	37748036	Exon 2 of CDK12(+)	IGR: 12Kb before NEUROD2(-)		GRCh37	DELETION			CDK12-intragenic	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.1615:CDK12_chr17:g.37748036del			120336	30077	30603	0	24
P-0027193-T01-IM6	SOMATIC	CDK12		17	17	37543831	37682127	Intron of FBXL20(-):14Kb after exon 1	Exon 13 of CDK12(+)		GRCh37	DELETION			CDK12-intragenic	PRECISE	3to5	CDK12 (NM_016507) rearrangement: chr17:g.37543831_c.3318:CDK12del			138296	25946	43531	1	25
P-0017974-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37618829	37652826	Exon 1 of CDK12(+)	Intron of CDK12(+):2Kb after exon 5		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.505_c.2419+1879del	yes	unknown	33997	18833	19390	0	12
P-0019930-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37618902	37621987	Exon 1 of CDK12(+)	Intron of CDK12(+):3Kb after exon 1		GRCh37	DELETION	10	55	Deletion within transcript : mid-exon	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.578_c.1046+2617del	yes	unknown	3085	4006	4116	0	59
P-0048658-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37615359	37618484	Promoter of CDK12(+):2Kb from tx start	Exon 1 of CDK12(+)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.160:CDK12_chr17:g.37615359del	yes	unknown	3125	1000	850	0	8
P-0058538-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37617869	37619294	5-UTR of CDK12(+):455bp before coding start	Exon 1 of CDK12(+)		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.970:CDK12_chr17:g.37617869del	yes	unknown	1425	5955	5872	0	22
P-0015302-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37619133	37627038	Exon 1 of CDK12(+)	Intron of CDK12(+): 94bp before exon 2		GRCh37	DELETION	72	62	Deletion within transcript: mid-exon	PRECISE	3to5	CDK12 (NM_016507) rearrangement: c.809_c.1047-94del	yes	unknown	7905	1488	989	0	60
P-0010822-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37673757	37674854	Exon 10 of CDK12(+)	Intron of CDK12(+): 1Kb after exon 10		GRCh37	DUPLICATION	55	43	Duplication within transcript: mid-exon	PRECISE	5to3	CDK12 (NM_016507) Rearrangement :  c.2911_c.2963+1045dup	yes	unknown	1097	529	683	0	43
P-0073226-T01-IM7	SOMATIC	CDK12	EGF	17	4	37673918	110896384	Intron of CDK12(+):109bp after exon 10	Intron of EGF(+):421bp after exon 12		GRCh37	TRANSLOCATION	10	23	Protein Fusion: in frame  {CDK12:EGF}	PRECISE	3to5	CDK12 (NM_016507) - EGF (NM_001963) rearrangement: t(4;17)(q25;q12)(chr4:g.110896384::chr17:g.37673918)	yes	unknown	0	0	0	0	23
P-0038990-T01-IM6	SOMATIC	CDK12	FBXL20	17	17	37480976	37676367	Intron of FBXL20(-):18Kb after exon 2	Intron of CDK12(+):27bp after exon 11		GRCh37	INVERSION	10	16	Protein Fusion: in frame  {CDK12:FBXL20}	PRECISE	3to3	CDK12 (NM_016507) - FBXL20 (NM_032875) rearrangement: c.3095+27:CDK12_c.104+18457:FBXL20inv	yes	unknown	195391	23333	60493	0	16
P-0087362-T01-IM7	SOMATIC	CDK12		17	8	37668051	48390051	Intron of CDK12(+):168bp after exon 8	Intron of SPIDR(+):37Kb after exon 7		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {CDK12:SPIDR}	PRECISE	3to5	CDK12 (NM_016507) rearrangement: t(8;17)(q11.21;q12)(chr8:g.48390051::chr17:g.37668051)			0	0	0	0	9
P-0024871-T01-IM6	SOMATIC	CDK12	CACNA1G	17	17	37667806	48702116	Exon 8 of CDK12(+)	Intron of CACNA1G(+):226bp after exon 35		GRCh37	DELETION	10	51	Protein Fusion: mid-exon  {CDK12:CACNA1G}	PRECISE	3to5	CDK12 (NM_016507) - CACNA1G (NM_018896) rearrangement: c.2691:CDK12_c.6399+226:CACNA1Gdel	yes	unknown	11034310	336930	821153	0	52
P-0072444-T03-IM7	SOMATIC	CDK12	NSF	17	17	37627496	44829184	Exon 2 of CDK12(+)	Intron of NSF(+):202bp after exon 19		GRCh37	DELETION	10	19	Protein Fusion: mid-exon  {CDK12:NSF}	PRECISE	3to5	CDK12 (NM_016507) - NSF (NM_006178) rearrangement: c.1411:CDK12_c.2157+202:NSFdel	yes	unknown	7201688	267553	392120	0	19
P-0057341-T01-IM6	SOMATIC	CDK12	SPON1	17	11	37682247	14149386	Exon 13 of CDK12(+)	Intron of SPON1(+):8Kb before exon 6		GRCh37	TRANSLOCATION	10	19	Protein Fusion: mid-exon  {CDK12:SPON1}	PRECISE	3to5	CDK12 (NM_016507) - SPON1 (NM_006108) rearrangement: t(11;17)(p15.2;q12)(chr11:g.14149386::chr17:g.37682247)	yes	unknown	0	0	0	0	19
P-0003762-T01-IM5	SOMATIC	CDK12	ADCY9	17	16	37646665	4033430	Intron of CDK12(+): 145bp before exon 3	Exon 7 of ADCY9(-)		GRCh37	TRANSLOCATION	18	8	Protein fusion: mid-exon (ADCY9-CDK12)	PRECISE	5to5	t(16;17)(p13.3;q12)(chr16:g.4033430::chr17:g.37646665)	yes	unknown	0	0	0	0	8
P-0008960-T01-IM5	SOMATIC	CDK12	HTR1E	17	6	37646977	87697112	Exon 3 of CDK12(+)	5-UTR of HTR1E(+): 28Kb before coding start		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (CDK12-HTR1E)	PRECISE	3to5	CDK12 (NM_016507) - HTR1E (NM_000865)  rearrangement: t(6;17)(q14.3;q12)(chr6:g.87697112::chr17:g.37646977)			0	0	0	0	58
P-0079021-T02-IM7	SOMATIC	CDK12	ERBB2	17	17	37622084	37882127	Intron of CDK12(+):3Kb after exon 1	Intron of ERBB2(+):21bp after exon 23		GRCh37	DELETION	10	145	Protein Fusion: out of frame  {CDK12:ERBB2}	PRECISE	3to5	CDK12 (NM_016507) - ERBB2 (NM_004448) rearrangement: c.1046+2714:CDK12_c.2872+21:ERBB2del	yes	unknown	260043	66303	1572205	0	156
P-0041371-T01-IM6	SOMATIC	CDK12	SKAP1	17	17	37673680	46356712	Intron of CDK12(+):12bp before exon 10	Intron of SKAP1(-):67Kb after exon 4		GRCh37	INVERSION	8	5	Protein Fusion: out of frame  {CDK12:SKAP1}	PRECISE	3to3	CDK12 (NM_016507) - SKAP1 (NM_003726) rearrangement: c.2847-13:CDK12_c.280+66555:SKAP1inv	yes	unknown	8683032	317744	354221	0	5
P-0043326-T01-IM6	SOMATIC	CDK12	SNF8	17	17	37683411	47012127	Intron of CDK12(+):842bp after exon 13	Intron of SNF8(-):1Kb after exon 5		GRCh37	INVERSION	6	4	Protein Fusion: out of frame  {CDK12:SNF8}	PRECISE	3to3	CDK12 (NM_016507) - SNF8 (NM_007241) rearrangement: c.3760+842:CDK12_c.422+1405:SNF8inv	yes	unknown	9328716	416305	662686	0	4
P-0062040-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37025569	37657451	Promoter of LASP1(+):542bp from tx start	Intron of CDK12(+):51bp before exon 6		GRCh37	DELETION	0	6	Transcript Fusion {LASP1:CDK12}	IMPPRECISE	3to5	CDK12 (NM_016507) rearrangement: c.2420-52:CDK12_chr17:g.37025569del	yes	unknown	631882	24288	13347	0	8
P-0028936-T01-IM6	SOMATIC	CDK4	CDK4	12	12	58144934	58146085	Intron of CDK4(-):55bp after exon 3	5-UTR of CDK4(-):4Kb before coding start		GRCh37	INVERSION	8	4	Antisense Fusion	PRECISE	5to5	CDK4 (NM_000075) rearrangement: c.354+56_c.-147inv	yes	unknown	1151	2414	6474	0	4
P-0024838-T01-IM6	SOMATIC	CDK4		12	12	58082608	58142932	IGR: 5Kb before OS9(+)	Intron of CDK4(-):32bp after exon 7		GRCh37	DELETION			CDK4-intragenic	PRECISE	3to5	CDK4 (NM_000075) rearrangement: c.819+33:CDK4_chr12:g.58082608del			60324	913	935	0	29
P-0019564-T01-IM6	SOMATIC	CDK4	GNB3	12	12	6950073	58145430	5-UTR of GNB3(+):378bp before coding start	Exon 2 of CDK4(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {CDK4:GNB3}	PRECISE	5to5	CDK4 (NM_000075) - GNB3 (NM_002075) rearrangement : c.71:CDK4_c.-155:GNB3inv			51195357	721891	676510	0	2
P-0021573-T01-IM6	SOMATIC	CDK6		8	7	38736050	92392894	IGR: 23Kb before PLEKHA2(+)	Intron of CDK6(-):11Kb after exon 3		GRCh37	TRANSLOCATION			CDK6-intragenic	PRECISE	5to5	CDK6 (NM_001145306) rearrangement: t(7;8)(q21.2;p11.22)(chr7:g.92392894::chr8:g.38736050)			0	0	0	0	7
P-0003511-T01-IM5	SOMATIC	CDK6	SAMD9	7	7	92462548	92656964	Exon 2 of CDK6(-)	IGR: 72Kb before SAMD9(-)		GRCh37	INVERSION			CDK6-SAMD9 Fusion	PRECISE	5to5				194416	501	658	0	35
P-0025704-T01-IM6	SOMATIC	CDK6	CDK6	7	7	92247492	92249516	Exon 7 of CDK6(-)	Intron of CDK6(-):2Kb before exon 7		GRCh37	DELETION	10	42	Deletion within transcript : mid-exon	PRECISE	3to5	CDK6 (NM_001145306) rearrangement: c.728_c.699-1995del	yes	unknown	2024	215	91	0	42
P-0029948-T01-IM6	SOMATIC	CDK6	PPP1R9A	7	7	92247313	94726814	Intron of CDK6(-):72bp after exon 7	Intron of PPP1R9A(+):14Kb before exon 2		GRCh37	INVERSION	0	5	Protein Fusion: in frame  {CDK6:PPP1R9A}	IMPPRECISE	5to5	CDK6 (NM_001145306) - PPP1R9A (NM_001166161) rearrangement: c.834+73:CDK6_c.1396-13757:PPP1R9Ainv	yes	unknown	2479501	6146	7180	0	5
P-0056798-T02-IM6	SOMATIC	CDK8	CDK8	13	13	26904421	26975655	Intron of CDK8(+):7Kb before exon 2	Exon 12 of CDK8(+)		GRCh37	INVERSION	10	54	CDK8-intragenic	PRECISE	5to5	CDK8 (NM_001260) rearrangement: c.129-7283_c.1163inv	yes	unknown	71234	9700	8426	0	65
P-0060029-T01-IM7	SOMATIC	CDK8	NUTM2B								GRCh37				CDK8-NUTM2B Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CDK8-NUTM2B fusion. Note: The rearrangement is an in-frame fusion between genes CDK8 Exon2 (NM_001260) and NUTM2B Exon1 (NM_001278495). Note2: The functional significance of this event is unknown. CDK8 fusion being secondary to amplification by MSK-IMPACT cannot be excluded.	yes	unknown					
P-0018351-T01-IM6	SOMATIC	CDK8	CDK8	13	13	26959478	26967503	Exon 6 of CDK8(+)	Exon 7 of CDK8(+)		GRCh37	DELETION	6	2	Deletion within transcript : mid-exon	PRECISE	3to5	CDK8 NM_001260) rearrangement: c.645_c.647-1del	yes	unknown	8025	583	391	0	2
P-0005080-T01-IM5	SOMATIC	CDK8	CDK8	13	13	26827477	26828848	Promoter of CDK8(+): 1Kb from tx start	Exon 1 of CDK8(+)		GRCh37	DELETION	62	70	Deletion within transcript: mid-exon	PRECISE	3to5	CDK8(NM_001260)  Rearrangement :  c.-1302_70del	yes	unknown	1371	1262	1151	0	68
P-0084240-T01-IM7	SOMATIC	CDK8		13	13	26946498	26971513	Intron of CDK8(+):10Kb before exon 5	Intron of CDK8(+):151bp after exon 9		GRCh37	DUPLICATION			Duplication of 5 exons : in frame	PRECISE	5to3	CDK8 (NM_001260) rearrangement: c.457-10453_c.933+151dup			25015	4872	11104	0	15
P-0069549-T01-IM7	SOMATIC	CDK8	KDR	13	4	26923244	55958578	Exon 3 of CDK8(+)	Intron of KDR(-):205bp after exon 22		GRCh37	TRANSLOCATION	10	22	Protein Fusion: mid-exon  {CDK8:KDR}	PRECISE	3to3	CDK8 (NM_001260) - KDR (NM_002253) rearrangement: t(4;13)(q12;q12.13)(chr4:g.55958578::chr13:g.26923244)	yes	unknown	0	0	0	0	22
P-0070624-T01-IM7	SOMATIC	CDK8	FGF14	13	13	26967478	102505932	Intron of CDK8(+):25bp before exon 7	Intron of FGF14(-):15Kb after exon 3		GRCh37	INVERSION	10	10	Protein Fusion: out of frame  {CDK8:FGF14}	PRECISE	3to3	CDK8 (NM_001260) - FGF14 (NM_175929) rearrangement: c.647-26:CDK8_c.423+15143:FGF14inv	yes	unknown	75538454	298011	334617	0	10
P-0012246-T01-IM5	SOMATIC	CDKL5	ATM	X	11	18639068	108168152	Intron of CDKL5(+): 982bp after exon 16	Intron of ATM(+): 43bp after exon 33		GRCh37	TRANSLOCATION	17	33	Antisense fusion	PRECISE	3to3	ATM (NM_000051) Rearrangement : t(11;X)(q22.3;p22.13)(chr11:g.108168152::chrX:g.18639068)	yes	unknown	0	0	0	0	32
P-0040742-T01-IM6	SOMATIC	CDKN1A	CDKN1A	10	6	97688301	36652108	Intron of C10orf131(+):1Kb after exon 7	Exon 3 of CDKN1A(+)		GRCh37	TRANSLOCATION	10	36	CDKN1A-intragenic	PRECISE	5to5	CDKN1A (NM_078467) rearrangement: t(6;10)(p21.2;q24.1)(chr6:g.36652108::chr10:g.97688301)	yes	unknown	0	0	0	0	61
P-0004052-T01-IM5	SOMATIC	CDKN1B	CDKN1B	12	12	12871300	12874270	Intron of CDKN1B(+): 52bp after exon 1	3-UTR of CDKN1B(+): 2Kb after coding stop		GRCh37	DELETION	93	27	CDKN1B-intragenic	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.475+52C_c.*309del	yes	unknown	2970	1238	2482	0	37
P-0047234-T02-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12856023	12870845	IGR: 14Kb before CDKN1B(+)	Exon 1 of CDKN1B(+)		GRCh37	INVERSION	10	12	CDKN1B-intragenic	PRECISE	3to3	CDKN1B (NM_004064) rearrangement: c.72:CDKN1B_chr12:g.12856023inv	yes	unknown	14822	1482	1622	0	12
P-0078725-T01-IM7	SOMATIC	CDKN1B	CDKN1B	12	12	12205391	12871003	IGR: 18Kb before BCL2L14(+)	Exon 1 of CDKN1B(+)		GRCh37	INVERSION	10	154	CDKN1B-intragenic	PRECISE	3to3	CDKN1B (NM_004064) rearrangement: c.230:CDKN1B_chr12:g.12205391inv	yes	unknown	665612	8579	7562	0	154
P-0079150-T01-IM7	SOMATIC	CDKN1B	CDKN1B	12	12	12870794	12872578	Exon 1 of CDKN1B(+)	3-UTR of CDKN1B(+):2Kb after coding stop		GRCh37	DELETION	5	5	CDKN1B-intragenic	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.21:CDKN1B_chr12:g.12872578del	yes	unknown	1784	3989	2331	0	6
P-0078355-T01-IM7	SOMATIC	CDKN1B		12	10	12871827	112035895	Exon 2 of CDKN1B(+)	Intron of MXI1(+):3Kb before exon 4		GRCh37	TRANSLOCATION			CDKN1B-intragenic	PRECISE	5to5	CDKN1B (NM_004064) rearrangement: t(10;12)(q25.2;p13.1)(chr10:g.112035895::chr12:g.12871827)			0	0	0	0	41
P-0021482-T01-IM6	SOMATIC	CDKN1B		12	4	12870987	161050010	Exon 1 of CDKN1B(+)	IGR: 861Kb before RAPGEF2(+)		GRCh37	TRANSLOCATION			CDKN1B-intragenic	PRECISE	5to5	CDKN1B (NM_004064) rearrangement: t(4;12)(q32.1;p13.1)(chr4:g.161050010::chr12:g.12870987)			0	0	0	0	36
P-0022092-T01-IM6	SOMATIC	CDKN1B		12	12	12871669	38741621	Intron of CDKN1B(+):89bp before exon 2	IGR: 31Kb before ALG10B(+)		GRCh37	INVERSION			CDKN1B-intragenic	PRECISE	5to5	CDKN1B (NM_004064) Rearrangement : c.476-90:CDKN1B_chr12:g.38741621inv			25869952	85717	67516	0	4
P-0036170-T01-IM6	SOMATIC	CDKN1B		12	12	12859423	12874187	IGR: 11Kb before CDKN1B(+)	3-UTR of CDKN1B(+):3Kb after coding stop		GRCh37	DELETION			CDKN1B-intragenic	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.*226:CDKN1B_chr12:g.12859423del			14764	5233	5207	0	49
P-0074135-T01-IM7	SOMATIC	CDKN1B		12	12	12871311	12873052	Intron of CDKN1B(+):63bp after exon 1	3-UTR of CDKN1B(+):2Kb after coding stop		GRCh37	DELETION			CDKN1B-intragenic	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.475+63:CDKN1B_chr12:g.12873052del			1741	1960	2308	0	43
P-0071180-T01-IM7	SOMATIC	CDKN1B		12	12	11736850	12873081	IGR: 36Kb before LINC01252(+)	3-UTR of CDKN1B(+):2Kb after coding stop		GRCh37	DELETION			CDKN1B-intragenic	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.*9-889:CDKN1B_chr12:g.12873081del			1136231	156941	77187	0	11
P-0025924-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12869737	12871174	Promoter of CDKN1B(+):466bp from tx start	Exon 1 of CDKN1B(+)		GRCh37	DELETION	6	4	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN1B (NM_004064) rearrangement: c.-1037_c.401del	yes	unknown	1437	1549	1715	0	4
P-0074791-T01-IM7	SOMATIC	CDKN1B	DERA	12	12	12870886	16189246	Exon 1 of CDKN1B(+)	Exon 8 of DERA(+)		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {CDKN1B:DERA}	PRECISE	3to5	CDKN1B (NM_004064) - DERA (NM_015954) rearrangement: c.113:CDKN1B_c.831:DERAdel	yes	unknown	3318360	13415	12430	0	22
P-0065314-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21847107	21974440	Intron of MTAP(+):8Kb before exon 6	Intron of CDKN2A(-):3Kb before exon 2		GRCh37	DELETION	10	5	Antisense Fusion	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3233:CDKN2A_chr9:g.21847107del	yes	unknown	127333	16375	10522	0	12
P-0074991-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21818313	21971209	Intron of MTAP(+):112bp after exon 4	Intron of CDKN2A(-):2bp before exon 2		GRCh37	DELETION	10	59	Antisense Fusion	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-2:CDKN2A_chr9:g.21818313del	yes	unknown	152896	15708	15520	0	60
P-0079361-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21967657	21994301	5-UTR of CDKN2A-AS1(+):96bp before coding start	Exon 1 of CDKN2A(-)		GRCh37	DELETION	10	4	Antisense Fusion	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.30:CDKN2A_chr9:g.21967657del	yes	unknown	26644	10040	7340	0	4
P-0080010-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21838054	21985466	Intron of MTAP(+):45bp after exon 5	Intron of CDKN2A(-):9Kb after exon 1		GRCh37	DELETION	10	11	Antisense Fusion	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.193+8672:CDKN2A_chr9:g.21838054del	yes	unknown	147412	12376	16227	0	11
P-0087644-T01-IM7	SOMATIC	CDKN2A		9	9	21859526	21973552	Intron of MTAP(+):102bp after exon 7	Intron of CDKN2A(-):2Kb before exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-2345:CDKN2A_chr9:g.21859526del			114026	15538	8600	0	32
P-0034373-T01-IM6	SOMATIC	CDKN2A	TUSC1	9	9	21974684	25710229	Exon 1 of CDKN2A(-)	IGR: 34Kb before TUSC1(-)		GRCh37	INVERSION	10	16	CDKN2A-intragenic	PRECISE	5to5	CDKN2A (NM_000077) Rearrangement: c.143:CDKN2A_chr9:g.25710229del	yes	unknown	3735545	8106	4282	0	19
P-0040019-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21951523	21971053	IGR: 16Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2A(-)		GRCh37	DELETION	10	55	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.348:CDKN2A_chr9:g.21951523del	yes	unknown	19530	3801	3255	0	55
P-0043145-T01-IM6	SOMATIC	CDKN2A	LINC01242	9	9	21970962	30796986	Exon 2 of CDKN2A(-)	IGR: 408Kb before LINC01242(-)		GRCh37	DELETION	10	28	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.396:CDKN2A_chr9:g.30796986del	yes	unknown	8826024	49607	55876	0	28
P-0052258-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21971295	22026285	Intron of CDKN2A(-):88bp before exon 2	5-UTR of CDKN2B-AS1(+):95Kb before coding start		GRCh37	DELETION	0	8	CDKN2A-intragenic	IMPPRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-88:CDKN2A_chr9:g.22026285del	yes	unknown	54990	13250	15524	0	8
P-0061791-T01-IM7	SOMATIC	CDKN2A	DMRTA1	9	9	21971089	22234849	Exon 2 of CDKN2A(-)	IGR: 212Kb before DMRTA1(+)		GRCh37	DELETION	0	10	CDKN2A-intragenic	IMPPRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.312:CDKN2A_chr9:g.22234849del	yes	unknown	263760	22558	13778	0	17
P-0043404-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	11836214	21971371	IGR: 857Kb before TYRP1(+)	Intron of CDKN2A(-):164bp before exon 2		GRCh37	INVERSION	6	6	CDKN2A-intragenic	PRECISE	3to3	CDKN2A (NM_058195) rearrangement: c.194-164:CDKN2A_chr9:g.11836214inv	yes	unknown	10135157	9897	14166	0	6
P-0044017-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21958116	21974366	IGR: 9Kb before CDKN2A-AS1(+)	Intron of CDKN2A(-):3Kb before exon 2		GRCh37	DELETION	10	24	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3159:CDKN2A_chr9:g.21958116del	yes	unknown	16250	3873	3608	0	26
P-0062909-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	15498517	21974745	Intron of PSIP1(-):8Kb after exon 3	Exon 1 of CDKN2A(-)		GRCh37	INVERSION	0	65	CDKN2A-intragenic	IMPPRECISE	3to3	CDKN2A (NM_058195) rearrangement: c.194-3538:CDKN2A_chr9:g.15498517inv	yes	unknown	6476228	45894	99534	0	65
P-0062310-T02-IM7	SOMATIC	CDKN2A	IZUMO3	9	9	21973467	24938884	Intron of CDKN2A(-):2Kb before exon 2	IGR: 396Kb before IZUMO3(-)		GRCh37	INVERSION	0	11	CDKN2A-intragenic	IMPPRECISE	5to5	CDKN2A (NM_058195) rearrangement: c.194-2260:CDKN2A_chr9:g.24938884inv	yes	unknown	2965417	21067	18774	0	11
P-0068477-T01-IM7	SOMATIC	CDKN2A	CDKN2B	9	9	21974501	22003638	Exon 1 of CDKN2A(-)	3-UTR of CDKN2B(-):2Kb after coding stop		GRCh37	DELETION	10	35	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3294:CDKN2A_chr9:g.22003638del	yes	unknown	29137	4217	5481	0	36
P-0070280-T01-IM7	SOMATIC	CDKN2A	CDKN2B	9	9	21968459	22150819	Intron of CDKN2A(-):218bp before exon 3	IGR: 148Kb before CDKN2B(-)		GRCh37	DELETION	10	14	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.458-218:CDKN2A_chr9:g.22150819del	yes	unknown	182360	19598	9874	0	15
P-0072421-T02-IM7	SOMATIC	CDKN2A	LINC01239	9	9	21971088	22640600	Exon 2 of CDKN2A(-)	IGR: 6Kb before LINC01239(+)		GRCh37	DELETION	10	19	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.313:CDKN2A_chr9:g.22640600del	yes	unknown	669512	15485	18475	0	21
P-0075246-T01-IM7	SOMATIC	CDKN2A	LINC01239	9	9	21973706	22827139	Intron of CDKN2A(-):2Kb before exon 2	Promoter of LINC01239(+):181Kb from tx start		GRCh37	DELETION	10	20	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-2499:CDKN2A_chr9:g.22827139del	yes	unknown	853433	10079	15035	0	20
P-0076946-T01-IM7	SOMATIC	CDKN2A	LINC01239	9	9	21974476	22720851	Exon 1 of CDKN2A(-)	5-UTR of LINC01239(+):103Kb before coding start		GRCh37	DELETION	10	12	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3269:CDKN2A_chr9:g.22720851del	yes	unknown	746375	14997	17995	0	12
P-0076613-T01-IM7	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21973612	22060105	Intron of CDKN2A(-):2Kb before exon 2	5-UTR of CDKN2B-AS1(+):61Kb before coding start		GRCh37	DELETION	10	13	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-2405:CDKN2A_chr9:g.22060105del	yes	unknown	86493	8991	10263	0	28
P-0078246-T02-IM7	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21971010	22049358	Exon 2 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):72Kb before coding start		GRCh37	DELETION	10	13	CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.391:CDKN2A_chr9:g.22049358del	yes	unknown	78348	11280	13461	0	13
P-0076762-T02-IM7	SOMATIC	CDKN2A	ANO7	9	2	21974512	242163627	Exon 1 of CDKN2A(-)	3-UTR of ANO7(+):36Kb after coding stop		GRCh37	TRANSLOCATION	10	11	CDKN2A-intragenic	PRECISE	3to3	CDKN2A (NM_058195) rearrangement: t(2;9)(q37.3;p21.3)(chr2:g.242163627::chr9:g.21974512)	yes	unknown	0	0	0	0	11
P-0016575-T01-IM6	SOMATIC	CDKN2A		9	9	21971259	25375257	Intron of CDKN2A(-):52bp before exon 2	IGR: 301Kb before TUSC1(-)		GRCh37	DELETION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.151-52_chr9:g.25375257del			3403998	6864	12715	0	11
P-0019266-T01-IM6	SOMATIC	CDKN2A		9	9	21968772	21994783	Intron of CDKN2A(-):531bp before exon 3	Promoter of CDKN2B-AS1(+):6bp from tx start		GRCh37	DELETION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195, NM_000077) rearrangement: c.-453_c.*102-531del			26011	9617	4042	0	67
P-0028626-T01-IM6	SOMATIC	CDKN2A		9	9	21974759	22153033	Exon 1 of CDKN2A(-)	IGR: 150Kb before CDKN2B(-)		GRCh37	DELETION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_000077, NM_058195) rearrangement: c.68:CDKN2A_chr9:g.22153033del.			178274	8161	8841	0	15
P-0043367-T01-IM6	SOMATIC	CDKN2A		19	9	53210322	21968953	Intron of ZNF611(-):205bp before exon 7	Intron of CDKN2A(-):712bp before exon 3		GRCh37	TRANSLOCATION			CDKN2A-intragenic	PRECISE	3to3	CDKN2A (NM_000077) rearrangement: t(9;19)(p21.3;q13.41)(chr9:g.21968953::chr19:g.53210322)			0	0	0	0	7
P-0043628-T01-IM6	SOMATIC	CDKN2A		9	9	21970488	21974493	Intron of CDKN2A(-):412bp after exon 2	Exon 1 of CDKN2A(-)		GRCh37	INVERSION			CDKN2A-intragenic	PRECISE	3to3	CDKN2A (NM_000077) rearrangement: c.457+413_c.194-3286inv			4005	3608	4196	0	4
P-0058066-T02-IM7	SOMATIC	CDKN2A		9	9	21700632	21994215	IGR: 102Kb before MTAP(+)	Exon 1 of CDKN2A(-)		GRCh37	DELETION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.116:CDKN2A_chr9:g.21700632del			293583	30091	23053	0	9
P-0068283-T01-IM7	SOMATIC	CDKN2A		17	9	76414880	21968140	Intron of PGS1(+):746bp before exon 9	3-UTR of CDKN2A(-):6Kb after coding stop		GRCh37	TRANSLOCATION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: t(9;17)(p21.3;q25.3)(chr9:g.21968140::chr17:g.76414880)			0	0	0	0	22
P-0084150-T02-IM7	SOMATIC	CDKN2A		9	9	21974494	22089705	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):31Kb before coding start		GRCh37	DELETION			CDKN2A-intragenic	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3287:CDKN2A_chr9:g.22089705del			115211	12340	8927	0	12
P-0085466-T01-IM7	SOMATIC	CDKN2A		9	8	21970900	84588544	Exon 2 of CDKN2A(-)	IGR: 273Kb before LINC01419(+)		GRCh37	TRANSLOCATION			CDKN2A-intragenic	PRECISE	3to3	CDKN2A (NM_000077) rearrangement: t(8;9)(q21.13;p21.3)(chr8:g.84588544::chr9:g.21970900)			0	0	0	0	5
P-0046629-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968269	21992352	Intron of CDKN2A(-):28bp before exon 3	Intron of CDKN2A(-):2Kb after exon 1		GRCh37	DELETION	10	11	Deletion of 1 exon : in frame	PRECISE	3to5	CDKN2A (NM_058195, NM_000077) rearrangement: c.458-28:NM_000077_c.193+1786:NM_058195del	yes	unknown	24083	4231	5699	0	11
P-0066695-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968788	21972079	Intron of CDKN2A(-):547bp before exon 3	Intron of CDKN2A(-):872bp before exon 2		GRCh37	DELETION	10	13	Deletion of 1 exon : in frame	PRECISE	3to5	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-547:CDKN2A_c.194-872:CDKN2Adel	yes	unknown	3291	3320	2387	0	13
P-0065035-T02-IM7	SOMATIC	CDKN2A		9	9	21968390	21973665	Intron of CDKN2A(-):149bp before exon 3	Intron of CDKN2A(-):2Kb before exon 2		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-149:CDKN2A_c.194-2458:CDKN2Adel			5275	5005	3826	0	37
P-0061181-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21973735	21975325	Intron of CDKN2A(-):3Kb before exon 2	Intron of CDKN2A(-):4Kb before exon 2		GRCh37	DELETION	10	20	Deletion within intron	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-4118_c.194-2528del	yes	unknown	1590	2780	1769	0	22
P-0027721-T06-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21969989	21971000	Intron of CDKN2A(-):911bp after exon 2	Exon 2 of CDKN2A(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.358_c.457+912del	yes	unknown	1011	1170	500	0	26
P-0033150-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971012	21976201	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):5Kb before exon 2		GRCh37	DELETION	10	111	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.-1375_c.346del CDKN2Ap14ARF (NM_058195) rearrangement : c.194-4994_c.389del	yes	unknown	5189	3476	769	0	121
P-0049091-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968241	21970901	Exon 3 of CDKN2A(-)	Exon 2 of CDKN2A(-)		GRCh37	DELETION	8	3	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.457_c.458del	yes	unknown	2660	1738	2301	0	3
P-0052145-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974714	21987198	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):7Kb after exon 1		GRCh37	DELETION	10	31	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.193+6940_c.194-3507del	yes	unknown	12484	391	269	0	31
P-0053830-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971204	21974797	Exon 2 of CDKN2A(-)	Exon 1 of CDKN2A(-)		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3590_c.197del	yes	unknown	3593	3350	1490	0	11
P-0055556-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968229	21971728	Exon 3 of CDKN2A(-)	Intron of CDKN2A(-):521bp before exon 2		GRCh37	DELETION	0	9	Deletion within transcript : mid-exon	IMPPRECISE	3to5	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.470:CDKN2A_c.194-521:CDKN2Adel	yes	unknown	3499	4836	4515	0	9
P-0039998-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970935	21973402	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):2Kb before exon 2		GRCh37	DELETION	10	51	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.423_c.194-2195del	yes	unknown	2467	1404	1387	0	52
P-0065979-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971024	21981170	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2		GRCh37	DELETION	10	68	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-9963_c.377del	yes	unknown	10146	5243	5450	0	68
P-0067777-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971059	21974363	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):3Kb before exon 2		GRCh37	DELETION	10	201	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3156_c.342del	yes	unknown	3304	2535	1137	0	225
P-0069621-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974643	21981197	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-9990_c.194-3436del	yes	unknown	6554	1520	1926	0	13
P-0074254-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968241	21970901	Exon 3 of CDKN2A(-)	Exon 2 of CDKN2A(-)		GRCh37	DELETION	10	12	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.457_c.458del	yes	unknown	2660	2180	3700	0	12
P-0078849-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21965050	21970950	Promoter of CDKN2A(-):3Kb from tx start	Exon 2 of CDKN2A(-)		GRCh37	DELETION	10	138	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.408:CDKN2A_chr9:g.21965050del	yes	unknown	5900	2958	831	0	156
P-0040032-T01-IM6	SOMATIC	CDKN2A		9	9	21970970	21981057	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_000077) rearrangement: c.388:CDKN2A_chr9:g.21981057			10087	3798	3076	0	5
P-0083040-T01-IM7	SOMATIC	CDKN2A		9	9	21974711	21981176	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-9969_c.194-3504del			6465	1563	1032	0	66
P-0083353-T01-IM7	SOMATIC	CDKN2A		9	9	21971051	21975084	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):4Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-3877_c.350del			4033	4031	4880	0	52
P-0088098-T01-IM7	SOMATIC	CDKN2A		9	9	21971044	21976237	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):5Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-5030_c.357del			5193	6173	5920	0	19
P-0014513-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974511	21979672	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 8Kb before exon 2		GRCh37	DELETION	41	34	Deletion within transcript: mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.-4846_c.150+166del	yes	unknown	5161	2611	1505	0	33
P-0009463-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21974794	21978614	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 7Kb before exon 2		GRCh37	DELETION	36	34	Deletion within transcript: mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) Rearrangement :  c.-3788_c.33del	yes	unknown	3820	140	88	0	32
P-0006895-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971095	21974241	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 436bp after exon 1		GRCh37	DELETION	23	23	Deletion within transcript: mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077)  rearrangement: c.150+436del_c.263del  CDKN2Ap14ARF (NM_058195)  rearrangement: c.194-3034_c.306del	yes	unknown	3146	458	357	0	15
P-0009958-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21969657	21971068	Intron of CDKN2A(-): 1Kb after exon 2	Exon 2 of CDKN2A(-)		GRCh37	DELETION	32	16	Deletion within transcript: mid-exon	PRECISE	3to5	CDKN2Ap14ARF (NM_058195) rearrangement : c.333_*101+1244del CDKN2Ap16INK4A (NM_000077) rearrangement : c.290_457+1244del	yes	unknown	1411	1791	1403	0	14
P-0012736-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971114	21974215	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 462bp after exon 1		GRCh37	DELETION	29	23	Deletion within transcript: mid-exon	PRECISE	3to5	CDKN2A (NM_000077, NM_058195) rearrangement: c.150+462_c.244del:CDKN2Ap16INK4A ,  c.194-3008_c.287del:CDKN2Ap14ARF	yes	unknown	3101	373	134	0	20
P-0003096-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21969003	21974791	Intron of CDKN2A(-): 762bp before exon 3	Exon 1 of CDKN2A(-)		GRCh37	DUPLICATION	6	5	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	5788	7376	6178	0	5
P-0054459-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21971156	22104170	Exon 2 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):17Kb before coding start		GRCh37	INVERSION	10	93	Protein Fusion: mid-exon  {CDKN2B-AS1:CDKN2A}	PRECISE	3to3	CDKN2A (NM_058195) rearrangement: c.245:CDKN2A_chr9:g.22104170inv	yes	unknown	133014	13188	17803	0	99
P-0023880-T01-IM6	SOMATIC	CDKN2A	COA6	9	1	21994303	234520989	Exon 1 of CDKN2A(-)	Promoter of COA6(+):12Kb from tx start		GRCh37	TRANSLOCATION	10	16	Protein Fusion: mid-exon  {COA6:CDKN2A}	PRECISE	3to3	COA6 (NM_001206641) - CDKN2Ap14ARF (NM_058195) Rearrangement :  t(1;9)(q42.3;p21.3)(chr1:g.234520989::chr9:g.21994303)	yes	unknown	0	0	0	0	16
P-0031864-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21971407	22002380	Intron of CDKN2A(-):200bp before exon 2	Promoter of CDKN2B(-):521bp from tx start		GRCh37	DELETION	10	9	Transcript Fusion {CDKN2B:CDKN2A}	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.151-200:CDKN2Ap16INK4A_chr9:g.22002380del CDKN2Ap14ARF (NM_058195) rearrangement : c.194-200:CDKN2Ap14ARF_chr9:g.22002380del	yes	unknown	30973	3195	1433	0	10
P-0080411-T02-IM7	SOMATIC	CDKN2A		9	9	21972470	22012004	Intron of CDKN2A(-):1Kb before exon 2	Promoter of CDKN2B(-):9Kb from tx start		GRCh37	DELETION			Transcript Fusion {CDKN2B:CDKN2A}	PRECISE	3to5	CDKN2A (NM_058195) rearrangement: c.194-1263:CDKN2A_chr9:g.22012004del			39534	10590	11486	0	52
P-0007977-T01-IM5	SOMATIC	CDKN2A		9	9	21971086	22065752	Exon 2 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 55Kb before coding start		GRCh37	DELETION			CDKN2Ap14ARF-intragenic	PRECISE	3to5	CDKN2Ap14ARF (NM_058195) rearrangement : c.438:CDKN2Ap14ARF_chr9:g.22065752del    CDKN2Ap16INK4A (NM_000077) rearrangement : c.272:CDKN2Ap16INK4A_chr9:g.22065752del			94666	9618	6925	0	19
P-0010948-T01-IM5	SOMATIC	CDKN2A		9	9	21974604	22028649	Exon 1 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 92Kb before coding start		GRCh37	DELETION			CDKN2Ap14ARF-intragenic	PRECISE	3to5	CDKN2Ap14ARF (NM_058195) rearrangement : c.194-3397_chr9:g.22028649del CDKN2Ap16INK4A (NM_000077) rearrangement : c.150+73_chr9:g.22028649del			54045	16731	7856	0	114
P-0012306-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21971024	22056567	Exon 2 of CDKN2Ap16INK4A(-)	5-UTR of CDKN2BAS(+): 65Kb before coding start		GRCh37	DELETION	21	16	CDKN2Ap16INK4A-CDKN2BAS Fusion	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: chr9:g.22056567_c.334:CDKN2Ap16INK4Adel	yes	unknown	85543	12300	12300		
P-0020612-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970084	21971170	Intron of CDKN2Ap16INK4A(-):816bp after exon 2	Exon 2 of CDKN2Ap16INK4A(-)		GRCh37	DELETION	10	11	CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement:  c.457+817_c.188del	yes	unknown	1086	2880	3775		
P-0022723-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21969865	21971004	Intron of CDKN2Ap16INK4A(-):1Kb before exon 2	Exon 2 of CDKN2Ap16INK4A(-)		GRCh37	DELETION	10	37	CDKN2Ap16INK4A-intragenic	PRECISE	3to3	CDKN2Ap16INK4A (NM_000077): c.354_c.457+1036del	yes	unknown	1139	1774	2321		
P-0027386-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970912	21973518	Exon 2 of CDKN2Ap16INK4A(-)	1159bp after exon 1 of CDKN2Ap16INK4A(-)		GRCh37	DELETION	10	48	CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.446_c.150+1159del	yes	unknown	2606	0	1062		
P-0027540-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968902	21987653	Intron of CDKN2Ap16INK4A(-):661bp before exon 3	IGR: 19Kb before CDKN2Ap16INK4A		GRCh37	DELETION	10	15	CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.458-661_chr9:g.21987653del	yes	unknown	18751	0	4219		
P-0037803-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21974509	22066617	Exon 1 of CDKN2Ap16INK4A(-)	5'-UTR of CDKN2B-AS1(+):54Kb before coding start		GRCh37	DELETION	10	16	CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.150+168:CDKN2Ap16INK4A_chr9:g.22066617del	yes	unknown	92108	9860	3381	0	17
P-0009260-T01-IM5	SOMATIC	CDKN2A		9	9	21968268	22078146	Intron of CDKN2A(-): 27bp before exon 3	5-UTR of CDKN2BAS(+): 43Kb before coding start		GRCh37	DELETION			CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) Rearrangement:  c.458-27_chr9:g.22078146del			109878	22142	16126	0	8
P-0009271-T01-IM5	SOMATIC	CDKN2A		9	9	21974752	22179390	Exon 1 of CDKN2A(-)	IGR: 58Kb after CDKN2BAS(+)		GRCh37	INVERSION			CDKN2Ap16INK4A-intragenic	PRECISE	3to3	CDKN2Ap16INK4A (NM_000077) rearrangement :  c.75_chr9:g.22179390inv			204638	13885	3089	0	43
P-0015321-T01-IM6	SOMATIC	CDKN2A		9	9	21971157	22157561	Exon 2 of CDKN2Ap16INK4(-)	IGR: 36Kb after CDKN2BAS(+)		GRCh37	DELETION			CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.201:CDKN2Ap16INK4A_chr9:g.22157561del			186404	0	11559		
P-0017224-T01-IM6	SOMATIC	CDKN2A		9	9	21968576	34756956	Intron of CDKN2A(-):335bp before exon 3	IGR: 34Kb before FAM205A(-)		GRCh37	INVERSION			CDKN2Ap16INK4A-intragenic	PRECISE	5to5	CDKN2Ap16INK4A (NM_000077) rearrangement : c.458-335:CDKN2Ap16INK4A_g.34756956inv			12788380	0	92736	0	14
P-0018490-T01-IM6	SOMATIC	CDKN2A		9	9	21970952	24391640	Exon 2 of CDKN2A(-)	IGR: 152Kb before IZUMO3(-)		GRCh37	INVERSION			CDKN2Ap16INK4A-intragenic	PRECISE	3to3	CDKN2Ap16INK4A(NM_000077) rearrangement: c.406:CDKN2Ap16INK4A_chr9:g.24391640inv			2420688	12333	26485	0	44
P-0022458-T01-IM6	SOMATIC	CDKN2A		9	9	21974631	22074751	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):46Kb before coding start		GRCh37	DELETION			CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.150+46_chr9:g.22074751del			100120	12265	12082	0	45
P-0023215-T01-IM6	SOMATIC	CDKN2A		9	9	21971243	22734473	Intron of CDKN2Ap16INK4A:36bp before exon 2	5-UTR of LINC01239(+):90Kb before coding start		GRCh37	INVERSION			CDKN2Ap16INK4A-intragenic	PRECISE	3to3	CDKN2Ap16INK4A (NM_000077) rearrangement: c.151-36:CDKN2Ap16INK4A_chr9:g.22734473inv			763230	0	5107		
P-0030308-T01-IM6	SOMATIC	CDKN2A		9	9	21970909	21985245	Intron of CDKN2Ap16INK4A(-):9Kb after exon 1	Intron of ARID4B(-):136bp before exon 13		GRCh37	DELETION			CDKN2Ap16INK4A-intragenic	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement : c.449:CDKN2Ap16INK4A_chr9:g.21985245del			14336	0	3614		
P-0018916-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21970626	22008795	Intron of CDKN2A(-):274bp after exon 2	Intron of CDKN2B(-):1bp after exon 1		GRCh37	INVERSION	10	7	CDKN2B-CDKN2Ap16INK4A fusion	PRECISE	3to3	CDKN2Ap16INK4A (NM_000077) - CDKN2B (NM_004936) rearrangement: c.457+275:CDKN2Ap16INK4A_c.156+2:CDKN2Binv	yes	unknown	38169	10694	16094	0	7
P-0021390-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974795	21975798	Exon 1 of CDKN2A(-)	5-UTR of CDKN2Ap16INK4A(-): 972bp before coding start		GRCh37	DELETION	10	59	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.32_c.-972del	yes	unknown	1003	135	87	0	63
P-0037789-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968241	21970901	Exon 3 of CDKN2A(-)	Exon 2 of CDKN2A(-)		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement: c.457_c.458del	yes	unknown	2660	2473	2836	0	6
P-0013672-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971003	21971577	Exon 2 of CDKN2Ap16INK4(-)	Intron of CDKN2Ap16INK4(-): 370bp before exon 2		GRCh37	DELETION	0	15	Deletion within transcript: mid-exon	IMPRECISE	3to5	CDKN2Ap16INK4A (NM_000077) rearrangement:  c.151-370_c.355del	yes	unknown	574	0	816		
P-0010824-T01-IM5	SOMATIC	CDKN2A	RB1	13	9	48919023	21970234	Intron of RB1(+): 193bp before exon 4	Intron of CDKN2A(-): 667bp after exon 2		GRCh37	TRANSLOCATION			Protein fusion: out of frame (CDKN2A-RB1)	PRECISE	5to5	CDKN2Ap16INK4A (NM_000077) -RB1 (NM_000321) Rearrangement : t(9;13)(p21.3;q14.2)(chr9:g.21970234::chr13:g.48919023) CDKN2Ap14ARF (NM_058195) -RB1 (NM_000321) Rearrangement : t(9;13)(p21.3;q14.2)(chr9:g.21970234::chr13:g.48919023)			0	0	0	0	3
P-0028699-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	22008654	22010019	Intron of CDKN2B(-):142bp after exon 1	Promoter of CDKN2B(-):7Kb from tx start		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	5to5	CDKN2B (NM_004936) rearrangement: c.156+143_c.-1067inv	yes	unknown	1365	2566	2259	0	13
P-0055500-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21967327	22006232	5-UTR of CDKN2A-AS1(+):426bp before coding start	Exon 2 of CDKN2B(-)		GRCh37	DELETION	10	67	Antisense Fusion	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.171:CDKN2B_chr9:g.21967327del	yes	unknown	38905	14229	18840	0	70
P-0022001-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21866156	22008064	Promoter of MTAP(+):64Kb from tx start	Intron of CDKN2B(-):732bp after exon 1		GRCh37	DELETION	7	5	Antisense Fusion	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.156+733:CDKN2B_chr9:g.21866156del	yes	unknown	141908	14433	13637	0	5
P-0079320-T02-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21964590	22008805	Promoter of CDKN2A-AS1(+):3Kb from tx start	Exon 1 of CDKN2B(-)		GRCh37	DELETION	10	85	Antisense Fusion	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.148:CDKN2B_chr9:g.21964590del	yes	unknown	44215	13929	10427	0	87
P-0031232-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21962196	22008494	IGR: 5Kb before CDKN2A-AS1(+)	Intron of CDKN2B(-):302bp after exon 1		GRCh37	DELETION	5	3	CDKN2B-intragenic	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.156+303:CDKN1B_chr9:g.21962196del	yes	unknown	46298	17134	15808	0	4
P-0042672-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	3627278	22008253	IGR: 41Kb before RFX3-AS1(+)	Intron of CDKN2B(-):543bp after exon 1		GRCh37	DELETION	10	34	CDKN2B-intragenic	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.156+544:CDKN2B_chr9:g.3627278del	yes	unknown	18380975	128325	60604	0	33
P-0058643-T01-IM7	SOMATIC	CDKN2B	ABI3BP	9	3	22008800	100468469	Exon 1 of CDKN2B(-)	3-UTR of ABI3BP(-):869bp after coding stop		GRCh37	TRANSLOCATION	10	14	CDKN2B-intragenic	PRECISE	5to3	CDKN2B (NM_004936) rearrangement: t(3;9)(q12.2;p21.3)(chr3:g.100468469::chr9:g.22008800)	yes	unknown	0	0	0	0	14
P-0062128-T02-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21958332	22008170	IGR: 9Kb before CDKN2A-AS1(+)	Intron of CDKN2B(-):626bp after exon 1		GRCh37	DELETION	10	24	CDKN2B-intragenic	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.156+627:CDKN2B_chr9:g.21958332del	yes	unknown	49838	16218	18550	0	23
P-0063855-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21784601	22008126	IGR: 18Kb before MTAP(+)	Intron of CDKN2B(-):670bp after exon 1		GRCh37	DELETION	0	5	CDKN2B-intragenic	IMPPRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.156+671:CDKN2B_chr9:g.21784601del	yes	unknown	223525	38278	32519	0	5
P-0075518-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21939560	22006031	IGR: 28Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2B(-)		GRCh37	DELETION	10	36	CDKN2B-intragenic	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.372:CDKN2B_chr9:g.21939560del	yes	unknown	66471	11890	7926	0	38
P-0010403-T02-IM6	SOMATIC	CDKN2B		9	9	21269616	22006143	IGR: 8Kb before IFNA22P(-)	Exon 2 of CDKN2B(-)		GRCh37	INVERSION			CDKN2B-intragenic	PRECISE	5to5	CDKN2B (NM_004936) Rearrangement : chr9:g.21269616_c.260:CDKN2Binv			736527	12132	9728	0	17
P-0049640-T01-IM6	SOMATIC	CDKN2B		9	9	21895095	22008857	IGR: 72Kb before CDKN2A-AS1(+)	Exon 1 of CDKN2B(-)		GRCh37	DELETION			CDKN2B-intragenic	PRECISE	3to5	CDKN2B (NM_004936) rearrangement: c.96:CDKN2B_chr9:g.21895095del			113762	15543	17455	0	28
P-0085029-T01-IM7	SOMATIC	CDKN2B		9	9	22008072	25952790	Intron of CDKN2B(-):724bp after exon 1	IGR: 114Kb before LOC100506422(+)		GRCh37	INVERSION			CDKN2B-intragenic	IMPPRECISE	5to5	CDKN2B (NM_004936) rearrangement: c.156+725:CDKN2B_chr9:g.25952790inv			3944718	9898	16406	0	8
P-0045616-T01-IM6	SOMATIC	CDKN2B	SLC24A2	9	9	19673619	22008840	Intron of SLC24A2(-):51Kb before exon 2	Exon 1 of CDKN2B(-)		GRCh37	DELETION	10	22	Protein Fusion: mid-exon  {CDKN2B:SLC24A2}	PRECISE	3to5	CDKN2B (NM_004936) - SLC24A2 (NM_020344) rearrangement: c.113:CDKN2B_c.931-51322:SLC24A2del	yes	unknown	2335221	13863	14678	0	25
P-0071570-T02-IM7	SOMATIC	CDKN2B	GNE	9	9	22008729	36227813	Intron of CDKN2B(-):67bp after exon 1	Intron of GNE(-):358bp before exon 6		GRCh37	DUPLICATION	10	65	Protein Fusion: out of frame  {CDKN2B:GNE}	PRECISE	5to3	CDKN2B (NM_004936) - GNE (NM_001128227) rearrangement: c.156+68:CDKN2B_c.1164-358:GNEdup	yes	unknown	14219084	92303	114897	0	65
P-0005535-T01-IM5	SOMATIC	CDKN2C		1	1	48479133	51434357	IGR: 88Kb before SKINTL(-)	Promoter of CDKN2C(+): 10bp from tx start		GRCh37	DELETION			CDKN2C-intragenic	PRECISE	3to5	CDKN2C (NM_078626) rearrangement: c.-1684:CDKN2C_chr1:g.48479133del			2955224	1560	1811	0	16
P-0035483-T01-IM6	SOMATIC	CEACAM7	CIC	19	19	42190095	42796820	Intron of CEACAM7(-):694bp after exon 2	Exon 14 of CIC(+)		GRCh37	INVERSION	10	28	Protein Fusion: mid-exon  {CEACAM7:CIC}	PRECISE	5to5	CEACAM7 (NM_006890) - CIC (NM_015125) rearrangemnet:  c.427+695:CEACAM7_c.3278:CICinv	yes	unknown	606725	76787	92147	0	35
P-0071686-T01-IM7	SOMATIC	CEBPA	ZNF616	19	19	33792352	52643057	Exon 1 of CEBPA(-)	5-UTR of ZNF616(-):25Kb before coding start		GRCh37	INVERSION	10	27	Antisense Fusion	PRECISE	5to5	CEBPA (NM_004364) rearrangement: c.969:CEBPA_chr19:g.52643057inv	yes	unknown	18850705	333576	504321	0	27
P-0046868-T01-IM6	SOMATIC	CEBPA	HNRNPUL1	19	19	33793292	41809503	Exon 1 of CEBPA(-)	Intron of HNRNPUL1(+):373bp before exon 13		GRCh37	DELETION	10	31	CEBPA-intragenic	PRECISE	3to5	CEBPA (NM_004364) rearrangement: c.29:CEBPA_chr19:g.41809503del	yes	unknown	8016211	161675	201063	0	36
P-0041875-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33469519	33793047	3-UTR of RHPN2(-):1Kb after coding stop	Exon 1 of CEBPA(-)		GRCh37	INVERSION	10	30	CEBPA-intragenic	PRECISE	5to5	CEBPA (NM_004364) rearrangement: c.274:CEBPA_chr19:g.33469519inv	yes	unknown	323528	7185	11130	0	37
P-0077346-T01-IM7	SOMATIC	CEBPA	CEBPA	19	19	33748511	33793117	IGR: 42Kb before CEBPA(-)	Exon 1 of CEBPA(-)		GRCh37	DELETION	0	52	CEBPA-intragenic	IMPPRECISE	3to5	CEBPA (NM_004364) rearrangement: c.204:CEBPA_chr19:g.33748511del	yes	unknown	44606	6624	12567	0	55
P-0038909-T01-IM6	SOMATIC	CEBPA	ZNF585A	19	19	33793248	37642907	Exon 1 of CEBPA(-)	Exon 6 of ZNF585A(-)		GRCh37	DUPLICATION	10	12	Protein Fusion: mid-exon  {CEBPA:ZNF585A}	PRECISE	5to3	CEBPA (NM_004364) - ZNF585A (NM_152655) rearrangement: c.73:CEBPA_c.1729:ZNF585Adup	yes	unknown	3849659	100177	184814	0	47
P-0012260-T01-IM5	SOMATIC	CEBPB	CEBPB	20	20	48808548	48840052	Exon 1 of CEBPB(+)	IGR: 33Kb before CEBPB(+)		GRCh37	INVERSION	0	14	CEBPB-intragenic	IMPRECISE	3to3	CEBPB (NM_005194) rearrangement: c.978:CEBPB_chr20:g.48840052inv	yes	unknown	31504	30	79	0	14
P-0058349-T01-IM6	SOMATIC	CELF5	DOT1L	19	19	2210517	3254330	Intron of DOT1L(+):8bp after exon 13	Intron of CELF5(+):3Kb after exon 2		GRCh37	DUPLICATION	10	125	Protein Fusion: in frame  {CELF5:DOT1L}	PRECISE	5to3	CELF5 (NM_021938) - DOT1L (NM_032482) rearrangement: c.342+3265:CELF5_c.1116+8:DOT1Ldup	yes	unknown	1043813	94545	124869	0	132
P-0015058-T03-IM6	SOMATIC	CENPE	FAM175A	4	4	84390340	104032264	Intron of FAM175A(-):36bp before exon 6	Intron of CENPE(-):96bp before exon 45		GRCh37	DELETION	10	52	Protein Fusion: out of frame  {CENPE:FAM175A}	PRECISE	3to5	CENPE (NM_001813) - FAM175A (NM_139076) rearrangement: c.7541-96:CENPE_c.477-36:FAM175Adel	yes	unknown	19641924	15179	18536	0	61
P-0008525-T01-IM5	SOMATIC	CEP110	SETD2	9	3	123913096	47162785	Intron of CEP110(+): 335bp after exon 23	Exon 3 of SETD2(-)		GRCh37	TRANSLOCATION	16	37	Protein fusion: mid-exon (CEP110-SETD2)	PRECISE	3to3	CNTRL(NM_007018) - SETD2 (NM_014159) Rearrangement : t(9;2)(9q33.2;3p21.31)(chr9:g.123913096::chr3:g.47162785)	yes	unknown	0	0	0	0	37
P-0031413-T01-IM6	SOMATIC	CEP295	ATM	11	11	93451816	108172202	Intron of CEP295(+):3Kb before exon 19	Intron of ATM(+):172bp before exon 35		GRCh37	DELETION	10	19	Protein Fusion: out of frame  {CEP295:ATM}	PRECISE	3to5	KIAA1731(NM_033395) -ATM (NM_000051) Rearrangement : c.5750-2662:KIAA1731_ c.5178-173:ATMdel	yes	unknown	14720386	119123	132907	0	19
P-0070126-T02-IM7	SOMATIC	CEP85	ARID1A	1	1	26583253	27105787	Intron of CEP85(+):834bp before exon 4	Exon 20 of ARID1A(+)		GRCh37	DELETION	8	5	Protein Fusion: mid-exon  {CEP85:ARID1A}	PRECISE	3to5	CEP85 (NM_022778) - ARID1A (NM_006015) rearrangement: c.904-835:CEP85_c.5398:ARID1Adel	yes	unknown	522534	41162	92735	0	5
P-0033850-T01-IM6	SOMATIC	CGNL1	FGFR2	15	10	57761701	123240015	Intron of CGNL1(+):8Kb after exon 9	Intron of FGFR2(-):480bp before exon 18		GRCh37	TRANSLOCATION	10	7	Protein Fusion: in frame  {FGFR2:CGNL1}	PRECISE	5to5	FGFR2 (NM_000141) - CGNL1 (NM_032866) rearrangement: t(10;15)(q26.13;q21.3)(chr10:g.123240015::chr15:g.57761701)	yes	unknown	0	0	0	0	7
P-0058455-T01-IM6	SOMATIC	CHAF1B	TMPRSS2	21	21	37769408	42873246	Intron of CHAF1B(+):304bp before exon 6	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION	10	45	Protein Fusion: in frame  {CHAF1B:TMPRSS2}	PRECISE	3to3	CHAF1B (NM_005441) - TMPRSS2 (NM_001135099) rearrangement: c.482-305:CHAF1B_c.56-3130:TMPRSS2inv	yes	unknown	5103838	58754	69902	0	45
P-0075422-T01-IM7	SOMATIC	CHD9	PIK3R1	16	5	53239392	67589219	Intron of CHD9(+):4Kb before exon 3	Exon 10 of PIK3R1(+)		GRCh37	TRANSLOCATION	10	36	Protein Fusion: mid-exon  {CHD9:PIK3R1}	PRECISE	3to5	CHD9 (NM_025134) - PIK3R1 (NM_181523) rearrangement: t(5;16)(q13.1;q12.2)(chr5:g.67589219::chr16:g.53239392)	yes	unknown	0	0	0	0	36
P-0011554-T01-IM5	SOMATIC	CHEK1		11	11	107213566	125503177	Intron of CWF19L2(-): 6Kb after exon 14	Exon 6 of CHEK1(+)		GRCh37	DELETION			CHEK1-intragenic	PRECISE	3to5	CHEK1 (NM_001274) rearrangement: chr11:g.107213566_c.544:CHEK1del			18289611	322386	327877	0	15
P-0064537-T01-IM7	SOMATIC	CHEK1		11	11	125514029	125515315	Exon 10 of CHEK1(+)	Intron of CHEK1(+):777bp after exon 11		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	CHEK1 (NM_001274) rearrangement: c.967_c.1233+777dup			1286	2783	4144	0	2
P-0077159-T01-IM7	SOMATIC	CHEK1		21	11	33043274	125514413	Promoter of SCAF4(-):38bp from tx start	Exon 11 of CHEK1(+)		GRCh37	TRANSLOCATION	7	7	Protein Fusion: mid-exon  {SCAF4:CHEK1}	PRECISE	5to5	CHEK1 (NM_001274) rearrangement: t(11;21)(q24.2;q22.11)(chr11:g.125514413::chr21:g.33043274)	yes	unknown	0	0	0	0	7
P-0037297-T01-IM6	SOMATIC	CHEK2	EMID1	22	22	29091226	29592609	Exon 12 of CHEK2(-)	IGR: 9Kb before EMID1(+)		GRCh37	DELETION	10	47	CHEK2-intragenic	PRECISE	3to5	CHEK2 (NM_007194) rearrangement: c.1264_chr22:g.29592609del	yes	unknown	501383	21008	11763	0	77
P-0013050-T01-IM5	SOMATIC	CHEK2		22	10	29093021	49868405	Intron of CHEK2(-): 46bp before exon 10	IGR: 25Kb before WDFY4(+)		GRCh37	TRANSLOCATION			CHEK2-intragenic	PRECISE	3to3	CHEK2 (NM_007194) rearrangement: t(10;22)(q11.22;q12.1)(chr10:g.49868405::chr22:g.29093021)			0	0	0	0	23
P-0071350-T01-IM7	SOMATIC	CHEK2		22	22	29093163	33030000	Intron of CHEK2(-):188bp before exon 10	Intron of SYN3(-):37Kb before exon 6		GRCh37	INVERSION			CHEK2-intragenic	PRECISE	3to3	CHEK2 (NM_007194) rearrangement: c.1009-188:CHEK2_chr22:g.33030000inv			3936837	114301	145630	0	13
P-0058186-T01-IM6	SOMATIC	CHEK2	CHEK2	22	22	29121121	29123951	Intron of CHEK2(-):9bp before exon 4	Intron of CHEK2(-):3Kb before exon 3		GRCh37	DELETION	10	22	Deletion of 1 exon : out of frame	PRECISE	3to5	CHEK2 (NM_007194) rearrangement: c.320-2596_c.445-9del	yes	unknown	2830	1447	2356	0	22
P-0062820-T02-IM7	SOMATIC	CHEK2	CHEK2	22	22	29089480	29092847	Intron of CHEK2(-):539bp after exon 13	Intron of CHEK2(-):41bp after exon 10		GRCh37	DELETION	10	7	Deletion of 3 exons : in frame	PRECISE	3to5	CHEK2 (NM_007194) rearrangement: c.1095+42_c.1461+540del	yes	unknown	3367	2997	3277	0	20
P-0087752-T01-IM7	SOMATIC	CHEK2		22	22	29100894	29121263	Intron of CHEK2(-):1Kb before exon 8	Exon 3 of CHEK2(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CHEK2 (NM_007194) rearrangement: c.412_c.847-1340del			20369	4531	3737	0	38
P-0068323-T01-IM7	SOMATIC	CHEK2	CHEK2	22	22	29081235	29092005	Promoter of CHEK2(-):2Kb from tx start	Intron of CHEK2(-):144bp before exon 11		GRCh37	DUPLICATION	10	8	Duplication within transcript	PRECISE	5to3	CHEK2 (NM_007194) rearrangement: c.1096-144:CHEK2_chr22:g.29081235dup	yes	unknown	10770	3070	5966	0	17
P-0043078-T01-IM6	SOMATIC	CHEK2	TTC28	22	22	28901964	29130683	Intron of TTC28(-):124Kb after exon 2	Exon 2 of CHEK2(-)		GRCh37	DELETION	10	17	Protein Fusion: mid-exon  {CHEK2:TTC28}	PRECISE	3to5	CHEK2 (NM_007194) - TTC28 (NM_001145418) rearrangement: c.27:CHEK2_c.381+123576:TTC28del	yes	unknown	228719	19644	15321	0	17
P-0011039-T01-IM5	SOMATIC	CHEK2	KIAA1984	22	9	29092840	139692272	Intron of CHEK2(-): 49bp after exon 10	Intron of KIAA1984(+): 1Kb before exon 2		GRCh37	TRANSLOCATION	45	80	Protein fusion: out of frame (CHEK2-KIAA1984)	PRECISE	5to5	CHEK2 (NM_007194) - KIAA1984 (NM_001039374) rearrangement : t(9;22)(q34.3;q12.1)(chr9:g.139692272::chr22:g.29092840)	yes	unknown	0	0	0	0	78
P-0003519-T01-IM5	SOMATIC	TMPRSS2		21	21	38896651	42874243	IGR: 9Kb after DYRK1A(+)	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	INVERSION			chr21-intragenic	PRECISE	3to3	chr21:g.38896651_c.56-4127:TMPRSS2inv			3977592	80002	68025	0	17
P-0017262-T01-IM6	SOMATIC	CHRNA5	SUFU	15	10	78876527	104359393	Intron of CHRNA5(+):2Kb before exon 3	Intron of SUFU(+):92bp after exon 8		GRCh37	TRANSLOCATION	10	8	Protein Fusion: out of frame  {SUFU:CHRNA5}	PRECISE	5to3	SUFU (NM_016169) - CHRNA5 (NM_000745) rearrangement: t(10;15)(q24.32;q25.1)(chr10:g.104359393::chr15:g.78876527)	yes	unknown	0	0	0	0	8
P-0033171-T01-IM6	SOMATIC	CIC	CIC	19	19	42792417	42795401	Intron of CIC(+):290bp after exon 6	Exon 10 of CIC(+)		GRCh37	INVERSION	10	16	Antisense Fusion	PRECISE	3to3	CIC (NM_015125) rearrangement: c.931+290_c.2481inv	yes	unknown	2984	14762	12800	0	15
P-0014634-T01-IM6	SOMATIC	CIC	PAFAH1B3	19	19	42796385	42803409	Intron of CIC(+): 26bp after exon 12	Intron of PAFAH1B3(-): 713bp after exon 4		GRCh37	DELETION	56	49	Antisense fusion	PRECISE	3to5	CIC (NM_015125) Rearrangement : c.3008+26:CIC_chr19:42803409del	yes	unknown	7024	23652	20556	0	38
P-0077331-T01-IM7	SOMATIC	CIC	CLASRP	19	19	42791879	45549818	Exon 5 of CIC(+)	Intron of CLASRP(+):6Kb before exon 3		GRCh37	INVERSION	10	91	Antisense Fusion	PRECISE	3to3	CIC (NM_015125) rearrangement: c.765:CIC_chr19:g.45549818inv	yes	unknown	2757939	53842	83559	0	90
P-0036054-T01-IM6	SOMATIC	CIC	DEDD2	19	19	42723011	42794318	3-UTR of DEDD2(-):1Kb after coding stop	Intron of CIC(+):66bp before exon 10		GRCh37	INVERSION			CIC-DEDD2 Fusion	IMPPRECISE	5to5	CIC (NM_015125) - DEDD2 (NM_133328) rearrangement: c.1465-67:CIC_c.-1266:DEDD2inv			71307	27187	32919	0	18
P-0020959-T01-IM6	SOMATIC	CIC	CIC	19	19	42797863	42799194	Exon 16 of CIC(+)	Exon 20 of CIC(+)		GRCh37	INVERSION	9	2	CIC-intragenic	PRECISE	5to5	CIC (NM_015125) rearrangement: c.3915_c.4678inv	yes	unknown	1331	12830	11407	0	2
P-0071549-T02-IM7	SOMATIC	CIC	CIC	19	19	42589066	42791948	Promoter of POU2F2(-):1Kb from tx start	Intron of CIC(+):13bp before exon 6		GRCh37	DELETION	10	5	CIC-intragenic	PRECISE	3to5	CIC (NM_015125) rearrangement: c.766-14:CIC_chr19:g.42589066del	yes	unknown	202882	16191	22261	0	6
P-0001884-T01-IM3	SOMATIC	CIC		19	19	42645881	42791355	IGR: 53Kb before POU2F2(-)	Exon 3 of CIC(+)		GRCh37	INVERSION			CIC-intragenic	PRECISE	5to5	CIC (NM_015125) inversion:  chr19:g.42645881_CIC:c.415inv			145474	6447	4158	0	18
P-0023771-T01-IM6	SOMATIC	CIC		19	19	4293516	42790931	Intron of TMIGD2(-):634bp before exon 5	Exon 2 of CIC(+)		GRCh37	DELETION			CIC-intragenic	PRECISE	3to5	CIC (NM_015125) rearrangement: chr19:g.4293516_c.76del			38497415	624054	677064	0	28
P-0026409-T01-IM6	SOMATIC	CIC		19	3	42793933	13023744	Intron of CIC(+):66bp before exon 9	Intron of IQSEC1(-):40Kb before exon 2		GRCh37	TRANSLOCATION			CIC-intragenic	PRECISE	5to3	CIC (NM_015125) rearrangement: t(3;19)(p25.2;q13.2)(chr3:g.13023744::chr19:g.42793933)			0	0	0	0	90
P-0030773-T01-IM6	SOMATIC	CIC		19	19	32449624	42796285	IGR: 67Kb before LINC01533(+)	Exon 12 of CIC(+)		GRCh37	INVERSION			CIC-intragenic	PRECISE	5to5	CIC (NM_015125) rearrangement: c.2934:CIC_chr19:g.32449624inv			10346661	203040	309503	0	133
P-0043170-T01-IM6	SOMATIC	CIC		19	19	42785275	42794196	IGR: 4Kb before CIC(+)	Intron of CIC(+):93bp after exon 9		GRCh37	DELETION			CIC-intragenic	PRECISE	3to5	CIC (NM_015125) rearrangement: c.1464+93:CIC_chr19:g.42785275del			8921	19563	23359	0	56
P-0023771-T01-IM6	SOMATIC	CIC	ATP4A	19	19	36054198	42794647	Intron of ATP4A(-):28bp before exon 3	Exon 10 of CIC(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {CIC:ATP4A}	PRECISE	3to3	CIC (NM_015125) - ATP4A (NM_000704) rearrangement: c.1727_c.157-28inv			6740449	145344	166035	0	22
P-0020088-T01-IM6	SOMATIC	CIC	KDELR1	19	19	42796797	48885780	Exon 14 of CIC(+)	Promoter of KDELR1(-):46bp from tx start		GRCh37	INVERSION	10	45	Protein Fusion: mid-exon  {CIC:KDELR1}	PRECISE	3to3	CIC (NM_015125) rearrangement: c.3255:CIC_chr19:g.48885780inv	yes	unknown	6088983	67310	117873	0	45
P-0065827-T01-IM7	SOMATIC	CIC	MEGF8	19	19	42794549	42850836	Exon 10 of CIC(+)	Intron of MEGF8(+):2Kb after exon 12		GRCh37	DELETION	0	73	Protein Fusion: mid-exon  {CIC:MEGF8}	IMPPRECISE	3to5	CIC (NM_015125) - MEGF8 (NM_001410) rearrangement: c.1629:CIC_c.2097+1851:MEGF8del	yes	unknown	56287	28053	28957	0	83
P-0036010-T01-IM6	SOMATIC	CIC	VRK3	19	19	42793094	50526308	Exon 7 of CIC(+)	5-UTR of VRK3(-):44Kb before coding start		GRCh37	INVERSION	10	28	Protein Fusion: mid-exon  {CIC:VRK3}	PRECISE	3to3	CIC (NM_015125) - VRK3 (NM_016440) Rearrangement : c.986:CIC_c.-65+2216:VRK3inv	yes	unknown	7733214	112925	93383	0	27
P-0005393-T01-IM5	SOMATIC	CIC	CSMD1	19	8	42792003	4567111	Exon 6 of CIC(+)	Intron of CSMD1(-): 72Kb before exon 2		GRCh37	TRANSLOCATION	42	89	Protein fusion: mid-exon (CSMD1-CIC)	PRECISE	5to5	CSMD1 (NM_033225) - CIC (NM_015125) rearrangement: t(8;19)(p23.2;q13.2)(chr8:g.4567111::chr19:g.42792003)	yes	unknown	0	0	0	0	84
P-0083046-T01-IM7	SOMATIC	CIDEA	RICTOR	18	5	12255276	38949575	Intron of CIDEA(+):856bp after exon 1	Intron of RICTOR(-):238bp after exon 31		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {CIDEA:RICTOR}	PRECISE	3to3	CIDEA (NM_001279) - RICTOR (NM_152756) rearrangement: t(5;18)(p13.1;p11.21)(chr5:g.38949575::chr18:g.12255276)			0	0	0	0	8
P-0000631-T03-IM6	SOMATIC	CLASP1	INSR	19	2	7152997	122236197	Intron of INSR(-):59bp before exon 10	Intron of CLASP1(-):9Kb before exon 9		GRCh37	TRANSLOCATION	0	9	Protein Fusion: in frame  {CLASP1:INSR}	IMPPRECISE	3to5	CLASP1 (NM_015282) - INSR (NM_000208) rearrangement: t(2;19)(q14.2;p13.2)(chr2:g.122236197::chr19:g.7152997)	yes	unknown	0	0	0	0	59
P-0040781-T01-IM6	SOMATIC	CLEC3B	CTNNB1	3	3	41274835	45074212	Exon 8 of CTNNB1(+)	Intron of CLEC3B(+):2Kb after exon 2		GRCh37	DUPLICATION	10	53	Protein Fusion: mid-exon  {CLEC3B:CTNNB1}	PRECISE	5to3	CLEC3B (NM_003278) - CTNNB1 (NM_001904) rearrangement: c.208+1795:CLEC3B_c.1085:CTNNB1dup	yes	unknown	3799377	10251	11945	0	52
P-0038053-T01-IM6	SOMATIC	CLIP1	RET	12	10	122825512	43611121	Exon 10 of CLIP1(-)	Intron of RET(+):910bp before exon 12		GRCh37	TRANSLOCATION	5	8	Protein Fusion: mid-exon  {CLIP1:RET}	PRECISE	5to5	CLIP1 (NM_001247997) - RET (NM_020975) rearrangement: t(10;12)(q11.21;q24.31)(chr10:g.43611121::chr12:g.122825512)	yes	unknown	0	0	0	0	6
P-0072364-T01-IM7	SOMATIC	CLIP2	INSR	19	7	7267538	73735843	Exon 2 of INSR(-)	Intron of CLIP2(+):4Kb after exon 2		GRCh37	TRANSLOCATION	10	36	Protein Fusion: mid-exon  {CLIP2:INSR}	PRECISE	3to3	CLIP2 (NM_003388) - INSR (NM_000208) rearrangement: t(7;19)(q11.23;p13.2)(chr7:g.73735843::chr19:g.7267538)	yes	unknown	0	0	0	0	36
P-0002117-T01-IM3	SOMATIC	CLIP4	ALK	2	2	29372923	29447364	Intron of CLIP4(+): 3Kb before exon 9	Intron of ALK(-): 963bp after exon 19		GRCh37	DELETION	42	25	Antisense fusion	PRECISE	3to5	ALK (NM_004304) - CLIP4 (NM_024692) Deletion :  c.1022-2628:CLIP4_c.3172+963:ALKdel (see note)	yes	unknown	74441	30722	40382	0	29
P-0047650-T01-IM6	SOMATIC	CLSPN	CSF3R	1	1	36230399	36939574	Intron of CLSPN(-):84bp before exon 3	Intron of CSF3R(-):86bp before exon 5		GRCh37	DUPLICATION	0	5	Protein Fusion: in frame  {CLSPN:CSF3R}	IMPPRECISE	5to3	CLSPN (NM_022111) - CSF3R (NM_000760) rearrangement: c.134-84:CLSPN_c.362-86:CSF3Rdup	yes	unknown	709175	48951	65751	0	5
P-0024675-T01-IM6	SOMATIC	CLTC	ALK								GRCh37				CLTC-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CLTC-ALK fusion. Note: The rearrangement is an in-frame fusion between genes CLTC Exon31 (NM_004859) and ALK Exon19 (NM_004304).	yes	unknown					
P-0051864-T01-IM6	SOMATIC	CLTC	ALK	17	2	57770376	29448839	Intron of CLTC(+):712bp before exon 32	Intron of ALK(-):408bp before exon 19		GRCh37	TRANSLOCATION	10	60	Protein Fusion: in frame  {CLTC:ALK}	PRECISE	3to3	CLTC (NM_004859) - ALK (NM_004304) fusion: t(2;17)(p23.2;q23.1)(chr2:g.29448839::chr17:g.57770376)	yes	unknown	0	0	0	0	60
P-0020263-T01-IM6	SOMATIC	CLYBL	ERCC5	13	13	100431987	103515191	Intron of CLYBL(+):7Kb after exon 2	Exon 8 of ERCC5(+)		GRCh37	DELETION	10	16	Protein Fusion: mid-exon  {CLYBL:ERCC5}	PRECISE	3to5	CLYBL (NM_206808) - ERCC5 (NM_000123) rearrangement: c.187+6723:CYLBL_c.1692:ERCC5del	yes	unknown	3083204	18589	17452	0	16
P-0068700-T01-IM7	SOMATIC	CNTLN	ERCC2	19	9	45871972	17432214	Exon 5 of ERCC2(-)	Intron of CNTLN(+):16Kb after exon 18		GRCh37	TRANSLOCATION	10	39	Protein Fusion: mid-exon  {CNTLN:ERCC2}	PRECISE	3to3	CNTLN (NM_017738) - ERCC2 (NM_000400) rearrangement: t(9;19)(p22.2;q13.32)(chr9:g.17432214::chr19:g.45871972)	yes	unknown	0	0	0	0	39
P-0025398-T01-IM6	SOMATIC	CNTN1	ARID2	12	12	41336679	46211609	Intron of CNTN1(+):719bp before exon 11	Exon 5 of ARID2(+)		GRCh37	DUPLICATION	10	10	Protein Fusion: mid-exon  {ARID2:CNTN1}	PRECISE	5to3	ARID2 (NM_152641) - CNTN1 (NM_001843) rearrangement: c.575:ARID2_c.1380-720:CNTN1dup	yes	unknown	4874930	5612	7853	0	11
P-0011542-T01-IM5	SOMATIC	CNTN1	MLL2	12	12	41389365	49437578	Intron of CNTN1(+): 2Kb after exon 17	Intron of MLL2(-): 13bp before exon 23		GRCh37	INVERSION	44	47	Protein fusion: out of frame (MLL2-CNTN1)	PRECISE	5to5	MLL2 (NM_003482) - CNTN1 (NM_001843) rearrangement: c.5320-13:MLL2_c.2113+2294:CNTN1inv	yes	unknown	8048213	196820	286586	0	43
P-0035102-T01-IM6	SOMATIC	CNTN5	PGR	11	11	99683622	100933118	Intron of CNTN5(+):7Kb before exon 4	Intron of PGR(-):59bp after exon 4		GRCh37	INVERSION	0	16	Protein Fusion: in frame  {PGR:CNTN5}	IMPPRECISE	5to5	PGR (NM_00092) - CNTN5 (NM_001243270) rearrangement: c.2212+60:PGR_c.56-6653:CNTN5inv	yes	unknown	1249496	6462	8283	0	16
P-0042985-T01-IM6	SOMATIC	CNTRL	CDKN2B	9	9	22008250	123878592	Intron of CDKN2B(-):546bp after exon 1	Intron of CNTRL(+):1Kb after exon 9		GRCh37	INVERSION	9	7	Protein Fusion: in frame  {CNTRL:CDKN2B}	PRECISE	3to3	CNTRL (NM_007018) - CDKN2B (NM_004936) rearrangement: c.1455+1114:CNTRL_c.156+547:CDKN2Binv	yes	unknown	101870342	316647	385214	0	7
P-0070607-T01-IM7	SOMATIC	COG3	FLT1	13	13	28895810	46048244	Intron of FLT1(-):88bp before exon 23	Intron of COG3(+):2Kb before exon 2		GRCh37	INVERSION	10	26	Protein Fusion: in frame  {COG3:FLT1}	PRECISE	3to3	COG3 (NM_031431) - FLT1 (NM_002019) rearrangement: c.175-2092:COG3_c.3052-88:FLT1inv	yes	unknown	17152434	168153	177741	0	26
P-0007669-T01-IM5	SOMATIC	COL1A2	FH	7	1	94032373	241661124	Intron of COL1A2(+): 1Kb after exon 6	3-UTR of FH(-): 4bp after coding stop		GRCh37	TRANSLOCATION	51	77	FH-COL1A2 fusion	PRECISE	5to5	FH (NM_000143) rearrangement: t(1;7(q43;q22.31)(chr1:g.241661124::chr7:g.94032373  )	yes	unknown	0	0	0	0	75
P-0086800-T02-IM7	SOMATIC	COL4A3	ACVR1	2	2	158634805	228116615	Exon 5 of ACVR1(-)	Intron of COL4A3(+):528bp after exon 11		GRCh37	INVERSION			Protein Fusion: mid-exon  {COL4A3:ACVR1}	PRECISE	3to3	COL4A3 (NM_000091) - ACVR1 (NM_001111067) rearrangement: c.645+528:COL4A3_c.381:ACVR1inv			69481810	374108	531875	0	37
P-0023516-T01-IM6	SOMATIC	COLEC12	CDK12	18	17	386902	37665943	Intron of COLEC12(-):29Kb before exon 3	Intron of CDK12(+):14bp before exon 7		GRCh37	TRANSLOCATION	10	44	Protein Fusion: out of frame  {COLEC12:CDK12}	PRECISE	5to5	COLEC12 (NM_130386) - CDK12(NM_016507) rearrangement: t(17;18)(q12;p11.32)(chr17:g.37665943::chr18:g.386902)	yes	unknown	0	0	0	0	64
P-0075734-T02-IM7	SOMATIC	COMMD7	DNMT3B	20	20	31323831	31384404	Intron of COMMD7(-):7Kb after exon 1	Intron of DNMT3B(+):191bp before exon 13		GRCh37	INVERSION	7	4	Protein Fusion: out of frame  {COMMD7:DNMT3B}	PRECISE	5to5	COMMD7 (NM_053041) - DNMT3B (NM_006892) rearrangement: c.84+7283:COMMD7_c.1298-192:DNMT3Binv	yes	unknown	60573	16874	23334	0	4
P-0033582-T01-IM6	SOMATIC	CPA6	PREX2	8	8	68464813	69020555	Intron of CPA6(-):35Kb before exon 3	Exon 24 of PREX2(+)		GRCh37	INVERSION	10	56	Protein Fusion: mid-exon  {PREX2:CPA6}	PRECISE	3to3	PREX2 (NM_024870) - CPA6 (NM_020361) Rearrangement : c.2927:PREX2_c.193-34531:CPA6inv	yes	unknown	555742	40151	73340	0	70
P-0038743-T01-IM6	SOMATIC	CPD	INPP4A	17	2	28742240	99203760	Intron of CPD(+):6Kb before exon 3	Intron of INPP4A(+):178bp before exon 26		GRCh37	TRANSLOCATION	8	8	Protein Fusion: out of frame  {CPD:INPP4A}	PRECISE	3to5	CPD (NM_001304) - INPP4A (NM_001134224) fusion: t(2;17)(q11.2;q11.2)(chr2:g.99203760::chr17:g.28742240)	yes	unknown	0	0	0	0	8
P-0036438-T01-IM6	SOMATIC	CPM	IDH1	12	2	69293886	209108415	Intron of CPM(-):14Kb before exon 3	Intron of IDH1(-):87bp before exon 6		GRCh37	TRANSLOCATION	10	14	Protein Fusion: in frame  {CPM:IDH1}	PRECISE	5to3	CPM (NM_001005502) - IDH1 (NM_005896) rearrangement t(2;12)(q34;q15)(chr2:g.209108415::chr12:g.69293886)	yes	unknown	0	0	0	0	14
P-0035920-T01-IM6	SOMATIC	CPSF1	RECQL4	8	8	145626035	145737616	Intron of CPSF1(-):29bp after exon 7	Exon 19 of RECQL4(-)		GRCh37	DELETION	10	54	Protein Fusion: mid-exon  {RECQL4:CPSF1}	PRECISE	3to5	RECQL4 (NM_004260) - CPSF1 (NM_013291) rearrangement: c.3148:RECQL4_c.686+30:CPSF1del	yes	unknown	111581	4826	8999	0	56
P-0015244-T01-IM6	SOMATIC	CPT1A	APC	11	5	68605475	112043596	5-UTR of CPT1A(-): 23Kb before coding start	5-UTR of APC(+): 47Kb before coding start		GRCh37	TRANSLOCATION	0	26	Antisense fusion	IMPRECISE	5to3	APC (NM_000038) rearrangement: t(5;11)(q22.2;q13.3)(chr5:g.112043596::chr11:g.68605475)	yes	unknown	0	0	0	0	26
P-0035489-T01-IM6	SOMATIC	CRAMP1L	TSC2	16	16	1723293	2134268	Intron of CRAMP1L(+):588bp before exon 20	Exon 34 of TSC2(+)		GRCh37	DUPLICATION	10	19	Protein Fusion: mid-exon  {TSC2:CRAMP1L}	PRECISE	5to3	TSC2 (NM_000548) - CRAMP1L (NM_020825) Rearrangement : c.4045:TSC2_c.3646-589:CRAMP1Ldup	yes	unknown	410975	77757	100108	0	22
P-0027081-T01-IM6	SOMATIC	CREBBP		16	16	3822823	3832632	Intron of CREBBP(-):928bp after exon 13	Intron of CREBBP(-):52bp after exon 6		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	CREBBP (NM_004380) rearrangement: c.1573+53_c.2463+929inv			9809	7440	10362	0	10
P-0034685-T01-IM6	SOMATIC	CREBBP		19	16	30941833	3843332	Intron of ZNF536(+):5Kb after exon 2	Intron of CREBBP(-):54bp after exon 4		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to5	CREBBP (NM_004380) Rearrangement: t(16;19)(p13.3;q12)(chr16:g.3843332::chr19:g.30941833)			0	0	0	0	63
P-0054042-T01-IM6	SOMATIC	CREBBP	RBFOX1	16	16	3786878	6080195	Intron of CREBBP(-):62bp before exon 27	5-UTR of RBFOX1(+):1Mb before coding start		GRCh37	DELETION	10	42	CREBBP-intragenic	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.4395-62:CREBBP_chr16:g.6080195del	yes	unknown	2293317	43003	88588	0	43
P-0058226-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3416990	3807858	IGR: 4Kb before MTRNR2L4(-)	Exon 18 of CREBBP(-)		GRCh37	DELETION	10	47	CREBBP-intragenic	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.3561:CREBBP_chr16:g.3416990del	yes	unknown	390868	98101	25733	0	112
P-0064431-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3776422	3777994	3-UTR of CREBBP(-):1Kb after coding stop	Exon 31 of CREBBP(-)		GRCh37	DELETION	10	33	CREBBP-intragenic	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.7054:CREBBP_chr16:g.3776422del	yes	unknown	1572	1841	1965	0	35
P-0010172-T01-IM5	SOMATIC	CREBBP		16	6	3843541	94711700	Exon 4 of CREBBP(-)	IGR: 295Kb before TSG1(+)		GRCh37	TRANSLOCATION			CREBBP-intragenic	PRECISE	3to3	CREBBP (NM_004380) rearrangement: t(6;16)(q16.1;p13.3)(chr6:g.94711700::chr16:g.3843541)			0	0	0	0	9
P-0020341-T01-IM6	SOMATIC	CREBBP		16	16	3929966	3963526	5-UTR of CREBBP(-):152Kb before coding start	IGR: 34Kb before LOC102724927(-)		GRCh37	DELETION			CREBBP-intragenic	PRECISE	3to5	CREBBP (NM_004380) Rearrangement :  chr16:g.3963526_c.-49:CREBBPdel			33560	44	21	0	41
P-0029585-T01-IM6	SOMATIC	CREBBP		16	16	3619041	3842003	3-UTR of NLRC3(-):8Kb after coding stop	Exon 5 of CREBBP(-)		GRCh37	DELETION			CREBBP-intragenic	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.1309:CREBBP_chr16:g.3619041del			222962	108601	157533	0	9
P-0029839-T01-IM6	SOMATIC	CREBBP		16	16	3817855	51004135	Exon 16 of CREBBP(-)	IGR: 48Kb before LOC101927334(+)		GRCh37	INVERSION			CREBBP-intragenic	PRECISE	3to3	CREBBP (NM_004380) Rearrangement: c.3116:CREBBP_g.51004135inv			47186280	140510	182410	0	19
P-0035003-T01-IM6	SOMATIC	CREBBP		16	1	3830767	13983280	Exon 8 of CREBBP(-)	IGR: 43Kb before PRDM2(+)		GRCh37	TRANSLOCATION			CREBBP-intragenic	PRECISE	5to3	CREBBP (NM_004380) rearrangement: t(1;16)(p36.21;p13.3)(chr1:g.13983280::chr16:g.3830767)			0	0	0	0	42
P-0032614-T01-IM6	SOMATIC	CREBBP		16	16	3784130	3786498	Intron of CREBBP(-):2Kb after exon 28	Intron of CREBBP(-):152bp after exon 27		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.4560+153_c.4728+1907del			2368	2069	1698	0	2
P-0007114-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3780033	3823200	Intron of CREBBP(-): 158bp before exon 31	Intron of CREBBP(-): 552bp after exon 13		GRCh37	DELETION	13	11	Deletion of 17 exons: in frame	PRECISE	3to5	CREBBP (NM_004380) rearrangement :  c.2463+552_5173-158del	yes	unknown	43167	49026	37928	0	9
P-0052869-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3780099	3882924	Intron of CREBBP(-):224bp before exon 31	Intron of CREBBP(-):17Kb after exon 2		GRCh37	DELETION	10	7	Deletion of 28 exons : in frame	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.798+17374_c.5173-224del	yes	unknown	102825	43549	36587	0	7
P-0057555-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3788096	3795100	Intron of CREBBP(-):463bp after exon 26	Intron of CREBBP(-):138bp before exon 23		GRCh37	DELETION	7	2	Deletion of 4 exons : in frame	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.3915-138_c.4394+464del	yes	unknown	7004	5231	5589	0	3
P-0034350-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900336	3903815	Exon 2 of CREBBP(-)	Intron of CREBBP(-):3Kb before exon 2		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	CREBBP (NM_004380) rearrangement: c.86-2805_c.760del	yes	unknown	3479	5588	754	0	19
P-0019977-T01-IM6	SOMATIC	CREBBP		16	16	3832790	3867864	Exon 6 of CREBBP(-)	Intron of CREBBP(-):7Kb before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CREBBP (NM_004380) Rearrangement : c.799-7084_c.1468del			35074	6986	7242	0	6
P-0066698-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3829016	3833007	Intron of CREBBP(-):198bp before exon 9	Intron of CREBBP(-):80bp before exon 6		GRCh37	DUPLICATION	10	17	Duplication of 3 exons : out of frame	PRECISE	5to3	CREBBP (NM_004380) rearrangement: c.1331-80_c.1824-198dup	yes	unknown	3991	3821	5795	0	24
P-0075499-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3828695	3837225	Intron of CREBBP(-):5bp after exon 9	Intron of CREBBP(-):4Kb before exon 6		GRCh37	DUPLICATION	0	174	Duplication of 4 exons : out of frame	IMPPRECISE	5to3	CREBBP (NM_004380) rearrangement: c.1331-4298_c.1941+6dup	yes	unknown	8530	4472	13477	0	189
P-0017462-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3823128	3828120	Intron of CREBBP(-):623bp after exon 13	Exon 10 of CREBBP(-)		GRCh37	DUPLICATION	10	120	Duplication within transcript : mid-exon	PRECISE	5to3	CREBBP (NM_004380) Rearrangement : c.2005_c.2463+624dup	yes	unknown	4992	4230	19476	0	143
P-0044577-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900568	3929690	Exon 2 of CREBBP(-)	Intron of CREBBP(-):142bp after exon 1		GRCh37	DUPLICATION	10	37	Duplication within transcript : mid-exon	PRECISE	5to3	CREBBP (NM_004380) rearrangement: c.85+143_c.528dup	yes	unknown	29122	2995	4266	0	39
P-0014257-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3786681	3890400	Exon 27 of CREBBP(-)	Intron of CREBBP(-): 10Kb after exon 2		GRCh37	DUPLICATION	32	28	Duplication within transcript: mid-exon	PRECISE	5to3	CREBBP (NM_004380) rearrangement : c.798+9898_4530dup	yes	unknown	103719	39939	48925	0	28
P-0007046-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3805553	3824671	Intron of CREBBP(-): 2Kb after exon 19	Exon 12 of CREBBP(-)		GRCh37	DUPLICATION	95	39	Duplication within transcript: mid-exon	PRECISE	5to3	CREBBP (NM_004380) rearrangement : c.2182_3698+1736dup	yes	unknown	19118	16554	15403	0	39
P-0001440-T01-IM3	SOMATIC	CREBBP	CREBBP	16	16	3817857	3836919	Exon 16 of CREBBP(-)	Intron of CREBBP(-): 4Kb before exon 6		GRCh37	DUPLICATION	50	30	Duplication within transcript: mid-exon	PRECISE	5to3	None	yes	unknown	19062	17002	19180	0	25
P-0037818-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3644966	3823744	Intron of SLX4(-):366bp before exon 10	Intron of CREBBP(-):7bp after exon 13		GRCh37	DELETION	10	85	Protein Fusion: in frame  {CREBBP:SLX4}	PRECISE	3to5	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2463+8:CREBBP_c.2014-366:SLX4del	yes	unknown	178778	92312	107265	0	383
P-0045253-T01-IM6	SOMATIC	CREBBP	TRAP1	16	16	3767400	3778762	Intron of TRAP1(-):21bp after exon 1	Exon 31 of CREBBP(-)		GRCh37	DELETION	10	26	Protein Fusion: mid-exon  {CREBBP:TRAP1}	PRECISE	3to5	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.6286:CREBBP_c.88+22:TRAP1del	yes	unknown	11362	11636	8020	0	26
P-0038695-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3651365	3898722	Intron of SLX4(-):173bp before exon 5	Intron of CREBBP(-):2Kb after exon 2		GRCh37	DELETION	10	51	Protein Fusion: out of frame  {CREBBP:SLX4}	PRECISE	3to5	CREBBP (NM_004380) - SLX4 (NM_032444) fusion: c.798+1576:CREBBP_c.951-173:SLX4del	yes	unknown	247357	71102	71253	0	55
P-0081135-T01-IM7	SOMATIC	CRIM1	ALK	2	2	29447432	36708132	Intron of ALK(-):894bp after exon 19	Intron of CRIM1(+):1Kb after exon 7		GRCh37	INVERSION			Protein Fusion: in frame  {CRIM1:ALK}	PRECISE	3to3	CRIM1 (NM_016441) - ALK (NM_004304) fusion: c.1372+1295:CRIM1_c.3172+895:ALKinv			7260700	41425	49177	0	88
P-0084156-T01-IM7	SOMATIC	CRKL		22	22	21288660	21289920	Intron of CRKL(+):128bp after exon 2	Intron of CRKL(+):1Kb after exon 2		GRCh37	DELETION			Deletion within intron	IMPPRECISE	3to5	CRKL (NM_005207) rearrangement: c.777+128_c.777+1388del			1260	146	165	0	23
P-0014222-T01-IM6	SOMATIC	CRKL	RASGEF1C	22	5	21288518	179616450	Exon 2 of CRKL(+)	5-UTR of RASGEF1C(-): 51Kb before coding start		GRCh37	TRANSLOCATION	5	11	Protein fusion: mid-exon (CRKL-RASGEF1C)	PRECISE	3to3	CRKL (NM_005207) - RASGEF1C (NM_175062) Rearrangement :  t(5;22)(q35.3;q11.21)(chr5:g.179616450::chr22:g.21288518)	yes	unknown	0	0	0	0	11
P-0051746-T01-IM6	SOMATIC	CRLF2	CRLF2	X	X	867226	1321434	IGR: 282Kb before SHOX(+)	Intron of CRLF2(-):29bp before exon 4		GRCh37	INVERSION	10	21	CRLF2-intragenic	PRECISE	3to3	CRLF2 (NM_022148) rearrangement: c.350-29:CRLF2_chrX:g.867226inv	yes	unknown	454208	4126	5149	0	20
P-0073894-T01-IM7	SOMATIC	CRTC3	MAML2								GRCh37				CRTC3-MAML2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CRTC3-MAML2 fusion. Note: The rearrangement is an in-frame fusion between genes CRTC3 Exon2 (NM_022769) and MAML2 Exon2 (NM_032427).	yes	unknown					
P-0019529-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115267017	115268141	Intron of CSDE1(-):394bp before exon 17	Intron of CSDE1(-):187bp before exon 16		GRCh37	INVERSION	10	17	CSDE1-intragenic	PRECISE	3to3	CSDE1 (NM_001242891) rearrangement: c.1779-187_c.1892-394inv	yes	unknown	1124	1539	7313	0	11
P-0037450-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	37745433	115260807	IGR: 118Kb before MIR4255(+)	Exon 21 of CSDE1(-)		GRCh37	INVERSION	10	3	CSDE1-intragenic	PRECISE	5to5	CSDE1 (NM_001242891) rearrangement: c.2518:CSDE1_chr1:g.37745433inv	yes	unknown	77515374	245299	258904	0	3
P-0067374-T01-IM7	SOMATIC	CSDE1	LINC01036	1	1	115284236	187654319	Exon 3 of CSDE1(-)	IGR: 592Kb before LINC01036(+)		GRCh37	INVERSION	10	62	CSDE1-intragenic	PRECISE	3to3	CSDE1 (NM_001242891) rearrangement: c.50:CSDE1_chr1:g.187654319inv	yes	unknown	72370083	367395	663739	0	62
P-0022128-T01-IM6	SOMATIC	CSDE1		1	1	114598243	115261214	IGR: 34Kb before SYT6(-)	Intron of CSDE1(-):19bp after exon 20		GRCh37	DELETION			CSDE1-intragenic	PRECISE	3to5	CSDE1 (NM_001242891) rearrangement: chr1:g.114598243_c.2487+20:CSDE1del			662971	10579	6887	0	12
P-0023629-T01-IM6	SOMATIC	CSDE1		1	1	115263231	149712153	Exon 18 of CSDE1(-)	IGR: 42Kb before HIST2H2BF(-)		GRCh37	DELETION			CSDE1-intragenic	PRECISE	3to5	CSDE1 (NM_001242891) rearrangement: c.2119:CSDE1_chr1:g.149712153del			34448922	122424	90692	0	4
P-0023713-T01-IM6	SOMATIC	CSDE1		1	1	115260250	115262320	3-UTR of CSDE1(-):539bp after coding stop	Exon 19 of CSDE1(-)		GRCh37	INVERSION			CSDE1-intragenic	PRECISE	3to3	CSDE1 (NM_001242891) rearrangement: c.2234_c.*540inv			2070	4339	3931	0	15
P-0019094-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115267044	115268934	Intron of CSDE1(-):421bp before exon 17	Exon 15 of CSDE1(-)		GRCh37	DELETION	10	18	Deletion within transcript : mid-exon	PRECISE	3to5	CSDE1 (NM_001242891) Rearrangement : c.1676_c.1892-421del	yes	unknown	1890	4215	3880	0	20
P-0058368-T01-IM6	SOMATIC	CSDE1		1	1	115280550	115282109	Intron of CSDE1(-):33bp after exon 5	Intron of CSDE1(-):203bp after exon 4		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	CSDE1 (NM_001242891) rearrangement: c.337+204_c.447+34dup			1559	818	451	0	2
P-0075716-T01-IM7	SOMATIC	CSDE1	CSDE1	1	1	115175118	115261136	5-UTR of DENND2C(-):47Kb before coding start	Intron of CSDE1(-):97bp after exon 20		GRCh37	DELETION	10	33	Transcript Fusion {CSDE1:DENND2C}	PRECISE	3to5	CSDE1 (NM_001242891) rearrangement: c.2487+98:CSDE1_chr1:g.115175118del	yes	unknown	86018	6743	5264	0	33
P-0039692-T01-IM6	SOMATIC	CSF1R	CSF1R	11	5	126825443	149452835	Intron of KIRREL3(-):45Kb after exon 1	Intron of CSF1R(-):28bp after exon 7		GRCh37	TRANSLOCATION	10	18	Antisense Fusion	PRECISE	5to5	CSF1R (NM_005211) rearrangement: t(5;11)(q32;q24.2)(chr5:g.149452835::chr11:g.126825443)	yes	unknown	0	0	0	0	24
P-0070164-T01-IM7	SOMATIC	CSF1R	CSF1R	8	5	143674360	149434827	IGR: 18Kb before ARC(-)	Exon 20 of CSF1R(-)		GRCh37	TRANSLOCATION	10	10	CSF1R-intragenic	PRECISE	5to5	CSF1R (NM_005211) rearrangement: t(5;8)(q32;q24.3)(chr5:g.149434827::chr8:g.143674360)	yes	unknown	0	0	0	0	11
P-0049968-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	149459923	149479340	Intron of CSF1R(-):24bp before exon 4	5-UTR of CSF1R(-):46Kb before coding start		GRCh37	DELETION	10	20	Deletion within transcript	PRECISE	3to5	CSF1R (NM_005211) rearrangement: c.308-24:CSF1R_chr5:g.149479340del	yes	unknown	19417	5608	4467	0	22
P-0021314-T01-IM6	SOMATIC	CSF1R		5	5	149435126	149437070	Intron of CSF1R(-):227bp before exon 20	Exon 16 of CSF1R(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CSF1R (NM_005211) rearrangement: c.2555-227_c.2218del			1944	5820	990	0	57
P-0062530-T01-IM7	SOMATIC	CSF1R	NME7	5	1	149457705	169305070	Exon 5 of CSF1R(-)	Intron of NME7(-):11Kb before exon 2		GRCh37	TRANSLOCATION	10	7	Protein Fusion: mid-exon  {CSF1R:NME7}	PRECISE	5to3	CSF1R (NM_005211) - NME7 (NM_013330) rearrangement: t(1;5)(q24.2;q32)(chr1:g.169305070::chr5:g.149457705)	yes	unknown	0	0	0	0	7
P-0037344-T01-IM6	SOMATIC	CSF1R	SDR9C7	12	5	57323670	149460302	Intron of SDR9C7(-):333bp before exon 3	Intron of CSF1R(-):27bp after exon 3		GRCh37	TRANSLOCATION	10	52	Protein Fusion: out of frame  {CSF1R:SDR9C7}	PRECISE	3to5	CSF1R (NM_005211) - SDR9C7 (NM_148897) rearrangement: t(5;12)(q32;q13.3)(chr5:g.149460302::chr12:g.57323670)	yes	unknown	0	0	0	0	53
P-0048711-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	8438526	36939232	Intron of RERE(-):12Kb before exon 13	Intron of CSF3R(-):9bp before exon 6		GRCh37	INVERSION	10	8	Antisense Fusion	PRECISE	5to5	CSF3R (NM_000760) rearrangement: c.486-9:CSF3R_chr1:g.8438526inv	yes	unknown	28500706	391530	273947	0	8
P-0074799-T01-IM7	SOMATIC	CSF3R	CSF3R	1	1	6284487	36931979	3-UTR of ICMT(-):652bp after coding stop	Exon 17 of CSF3R(-)		GRCh37	INVERSION	10	72	CSF3R-intragenic	PRECISE	3to3	CSF3R (NM_000760) rearrangement: c.2490:CSF3R_chr1:g.6284487inv	yes	unknown	30647492	537757	585642	0	71
P-0016842-T01-IM6	SOMATIC	CSF3R		1	1	25041917	36933611	IGR: 30Kb before CLIC4(+)	Intron of CSF3R(-):48bp before exon 14		GRCh37	DELETION			CSF3R-intragenic	PRECISE	3to5	CSF3R (NM_000760) rearrangement: c.1724-48_chr1:g.25041917del			11891694	75028	92040	0	15
P-0021105-T01-IM6	SOMATIC	CSF3R		16	1	58687670	36937176	IGR: 13Kb before SLC38A7(-)	Exon 10 of CSF3R(-)		GRCh37	TRANSLOCATION			CSF3R-intragenic	PRECISE	5to3	CSF3R (NM_000760) rearrangement: t(1;16)(p34.4;q21)(chr1:g.36937176::chr16:g.58687670)			0	0	0	0	8
P-0029402-T01-IM6	SOMATIC	CSF3R		1	1	33652766	36940993	IGR: 42Kb before TRIM62(-)	Exon 4 of CSF3R(-)		GRCh37	INVERSION			CSF3R-intragenic	PRECISE	5to5	CSF3R (NM_000760) rearrangement: c.346:CSF3R_chr1:g.33652766inv			3288227	39328	62860	0	45
P-0017432-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	36934020	36937631	Intron of CSF3R(-):198bp before exon 13	Intron of CSF3R(-):35bp after exon 9		GRCh37	DELETION	10	26	Deletion of 3 exons : out of frame	PRECISE	3to5	CSF3R (NM_000760) rearrangement: c.1071+36_c.1577-198del	yes	unknown	3611	5418	10506	0	26
P-0032620-T01-IM6	SOMATIC	CSNK1G2	DOT1L	19	19	1981791	2222077	Promoter of CSNK1G2(+):41Kb from tx start	Exon 24 of DOT1L(+)		GRCh37	DELETION	10	41	Protein Fusion: mid-exon  {CSNK1G2:DOT1L}	PRECISE	3to5	DOT1L (NM_032482) rearrangement:c.2909:DOT1L_chr19:g.1981791del	yes	unknown	240286	51318	32674	0	42
P-0034215-T01-IM6	SOMATIC	CSNK1G2	DOT1L	19	19	1961329	2226272	5-UTR of CSNK1G2(+):8Kb before coding start	Exon 27 of DOT1L(+)		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {DOT1L:CSNK1G2}	PRECISE	5to3	DOT1L (NM_032482) - CSNK1G2 (NM_001319) rearrangement: c.3752:DOT1L_c.-265-8178:CSNK1G2dup	yes	unknown	264943	58839	56634	0	4
P-0075716-T01-IM7	SOMATIC	CTCF	LINC00602	16	6	67671426	166470240	Intron of CTCF(+):164bp before exon 12	IGR: 69Kb before LINC00602(+)		GRCh37	TRANSLOCATION	10	17	CTCF-intragenic	PRECISE	5to3	CTCF (NM_006565) rearrangement: t(6;16)(q27;q22.1)(chr6:g.166470240::chr16:g.67671426)	yes	unknown	0	0	0	0	17
P-0004589-T01-IM5	SOMATIC	CTCF	CTCF	16	16	67641976	67645823	5-UTR of CTCF(+): 3Kb before coding start	Intron of CTCF(+): 31bp before exon 4		GRCh37	DELETION	22	18	Deletion within transcript	PRECISE	3to5	CTCF (NM_006565) rearrangement : c.-9-2751_782-31del	yes	unknown	3847	6053	4785	0	15
P-0036109-T01-IM6	SOMATIC	CTCF	CTCF	16	16	67645070	67660203	Exon 3 of CTCF(+)	Intron of CTCF(+):254bp before exon 8		GRCh37	DUPLICATION	10	64	Duplication within transcript : mid-exon	PRECISE	5to3	CTCF (NM_006565) rearrangement: c.335_c.1358-255dup	yes	unknown	15133	8457	15117	0	65
P-0013182-T01-IM5	SOMATIC	CTCF	CTCF	16	16	67649540	67654670	Intron of CTCF(+): 1Kb before exon 5	Exon 6 of CTCF(+)		GRCh37	DUPLICATION	29	23	Duplication within transcript: mid-exon	PRECISE	5to3	CTCF (NM_006565) rearrangement: c.953-1108_c.1157dup	yes	unknown	5130	4820	6063	0	23
P-0037052-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41254099	41266215	5-UTR of CTNNB1(+):11Kb before coding start	Exon 3 of CTNNB1(+)		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	3to3	CTNNB1 (NM_001904) rearrangement: c.212:CTNNB1_chr3:g.41254099inv	yes	unknown	12116	2034	897	0	17
P-0051651-T01-IM6	SOMATIC	CTNNB1	ULK4	3	3	41266892	41408717	Exon 5 of CTNNB1(+)	Intron of ULK4(-):31Kb after exon 35		GRCh37	DELETION	10	5	Antisense Fusion	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.563:CTNNB1_chr3:g.41408717del	yes	unknown	141825	14031	14685	0	5
P-0012683-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41263595	41267019	5-UTR of CTNNB1(+): 2Kb before coding start	Exon 5 of CTNNB1(+)		GRCh37	INVERSION	19	15	CTNNB1-intragenic	PRECISE	5to5	CTNNB1 (NM_001904) rearrangement: c.-48-1917_c.690inv	yes	unknown	3424	11367	9135	0	13
P-0032187-T01-IM6	SOMATIC	CTNNB1	CTNNB1	5	3	20450107	41277838	5-UTR of CDH18(-):977Kb before coding start	Intron of CTNNB1(+):1bp before exon 12		GRCh37	TRANSLOCATION	0	13	CTNNB1-intragenic	IMPPRECISE	3to5	CTNNB1 (NM_001904) Rearrangement: t(3;5)(p21.3;p14.3)(chr3:g.41277838::chr5:g.20450107)	yes	unknown	0	0	0	0	13
P-0076428-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41263060	41266577	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)		GRCh37	INVERSION	10	63	CTNNB1-intragenic	PRECISE	5to5	CTNNB1 (NM_001904) rearrangement: c.374:CTNNB1_chr3:g.41263060inv	yes	unknown	3517	3145	3326	0	72
P-0031529-T01-IM6	SOMATIC	CTNNB1		3	3	41277908	41286230	Exon 12 of CTNNB1(+)	Promoter of ULK4(-):2Kb from tx start		GRCh37	DUPLICATION			CTNNB1-intragenic	PRECISE	5to3	CTNNB1 (NM_001904) rearrangement: c.1872: CTNNB1_chr3:g.41286230dup			8322	4265	8272	0	37
P-0052604-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265770	41266376	Intron of CTNNB1(+):198bp after exon 2	Intron of CTNNB1(+):68bp before exon 4		GRCh37	DELETION	4	3	Deletion of 1 exon : in frame	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.13+198_c.242-69del	yes	unknown	606	1357	1005	0	3
P-0042064-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265757	41266391	Intron of CTNNB1(+):185bp after exon 2	Intron of CTNNB1(+):53bp before exon 4		GRCh37	DELETION	10	113	Deletion of 1 exon : in frame	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.13+185_c.242-54del	yes	unknown	634	1823	1065	0	118
P-0076883-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41265624	41266407	Intron of CTNNB1(+):52bp after exon 2	Intron of CTNNB1(+):37bp before exon 4		GRCh37	DELETION	10	151	Deletion of 1 exon : in frame	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.13+52_c.242-38del	yes	unknown	783	1960	1638	0	158
P-0058806-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41265691	41266292	Intron of CTNNB1(+):119bp after exon 2	Intron of CTNNB1(+):48bp after exon 3		GRCh37	DELETION	0	43	Deletion of 1 exon : in frame	IMPPRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.13+119_c.241+48del	yes	unknown	601	1428	733	0	47
P-0008929-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265669	41266353	Intron of CTNNB1(+): 97bp after exon 2	Intron of CTNNB1(+): 92bp before exon 4		GRCh37	DELETION	25	22	Deletion of 1 exon: in frame	PRECISE	3to5	CTNNB1 (NM_001904) Rearrangement : c.13+97_242-92del	yes	unknown	684	4221	2297	0	20
P-0058775-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41263335	41266289	5-UTR of CTNNB1(+):2Kb before coding start	Intron of CTNNB1(+):45bp after exon 3		GRCh37	DELETION	10	5	Deletion within transcript	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.241+45:CTNNB1_chr3:g.41263335del	yes	unknown	2954	2440	1721	0	5
P-0024987-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263644	41266519	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	30	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.-48-1868_c.316del	yes	unknown	2875	2345	2180	0	30
P-0030721-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266032	41266664	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	59	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.29_c.461del	yes	unknown	632	2146	1573	0	65
P-0039522-T03-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266144	41266668	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION	0	21	Deletion within transcript : mid-exon	IMPPRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.141_c.465del	yes	unknown	524	2151	1026	0	24
P-0046910-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266026	41266613	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	53	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.23_c.410del	yes	unknown	587	2419	1722	0	56
P-0049545-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264962	41266577	5-UTR of CTNNB1(+):597bp before coding start	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	77	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.374:CTNNB1_chr3:g.41264962del	yes	unknown	1615	2300	2251	0	83
P-0054573-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266050	41266615	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.47_c.412del	yes	unknown	565	2126	3017	0	9
P-0047736-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264128	41266487	5-UTR of CTNNB1(+):1Kb before coding start	Exon 4 of CTNNB1(+)		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.284:CTNNB1_chr3:g.41264128del	yes	unknown	2359	1874	890	0	5
P-0068325-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41266142	41266667	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION	0	63	Deletion within transcript : mid-exon	IMPPRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.139_c.464del	yes	unknown	525	1762	1348	0	66
P-0044144-T01-IM6	SOMATIC	CTNNB1		3	3	41266034	41266653	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.31_c.450del			619	2102	2102	0	33
P-0010044-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265650	41266474	Intron of CTNNB1(+): 78bp after exon 2	Exon 4 of CTNNB1(+)		GRCh37	DELETION	0	102	Deletion within transcript: mid-exon	IMPRECISE	3to5	CTNNB1 (NM_001904) Rearrangement : c.13+78_c.271del	yes	unknown	824	3221	2070	0	106
P-0007600-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265666	41266570	Intron of CTNNB1(+): 94bp after exon 2	Exon 4 of CTNNB1(+)		GRCh37	DELETION	0	54	Deletion within transcript: mid-exon	IMPRECISE	3to5	CTNNB1 (NM_001904) rearrangement : c.9_367del	yes	unknown	904	5397	4895	0	51
P-0007860-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265673	41266211	Intron of CTNNB1(+): 101bp after exon 2	Exon 3 of CTNNB1(+)		GRCh37	DELETION	0	12	Deletion within transcript: mid-exon	IMPRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.13+101_c.208del	yes	unknown	538	2505	2883	0	11
P-0013404-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265660	41266646	Intron of CTNNB1(+): 88bp after exon 2	Exon 4 of CTNNB1(+)		GRCh37	DELETION	0	35	Deletion within transcript: mid-exon	IMPRECISE	3to5	CTNNB1 (NM_001904) Rearrangement : c.13+88_443del	yes	unknown	986	4450	3173	0	34
P-0013625-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41263436	41267260	5-UTR of CTNNB1(+): 2Kb before coding start	Exon 6 of CTNNB1(+)		GRCh37	DELETION	46	42	Deletion within transcript: mid-exon	PRECISE	3to5	CTNNB1 (NM_001904) rearrangement: c.-48-2076_c.844del	yes	unknown	3824	9114	10974	0	42
P-0008908-T01-IM5	SOMATIC	CTNNB1		3	3	41264228	41266531	5-UTR of CTNNB1(+): 1Kb before coding start	Exon 4 of CTNNB1(+)		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	CTNNB1 (NM_001904)  rearrangement: c.-48-1284_c.328del			2303	3168	3401	0	16
P-0049638-T01-IM6	SOMATIC	CTNNB1	ANKRD28	3	3	15815039	41275664	Intron of ANKRD28(-):7Kb before exon 3	Exon 10 of CTNNB1(+)		GRCh37	INVERSION	10	15	Protein Fusion: mid-exon  {CTNNB1:ANKRD28}	PRECISE	3to3	CTNNB1 (NM_001904) - ANKRD28 (NM_015199) rearrangement: c.1559:CTNNB1_c.112-7220:ANKRD28inv	yes	unknown	25460625	65306	82556	0	14
P-0020263-T01-IM6	SOMATIC	CTNNB1	PIGR	3	1	41266567	207117851	Exon 4 of CTNNB1(+)	5-UTR of PIGR(-):14Kb before coding start		GRCh37	TRANSLOCATION	0	18	Protein Fusion: mid-exon  {CTNNB1:PIGR}	IMPPRECISE	3to3	CTNNB1 (NM_001904) rearrangement: t(1;3)(q32.1;p22.1)(chr1:g.207117851::chr3:g.41266567)	yes	unknown	0	0	0	0	19
P-0076800-T01-IM7	SOMATIC	CTNNB1	MYRIP	3	3	40077817	41265577	Intron of MYRIP(+):8Kb before exon 3	Intron of CTNNB1(+):5bp after exon 2		GRCh37	DUPLICATION	10	52	Protein Fusion: out of frame  {CTNNB1:MYRIP}	PRECISE	5to3	CTNNB1 (NM_001904) - MYRIP (NM_015460) rearrangement: c.13+5:CTNNB1_c.111-7724:MYRIPdup	yes	unknown	1187760	2132	6638	0	54
P-0018870-T01-IM6	SOMATIC	CTNNB1	EXOSC7	3	3	41278000	45025339	Intron of CTNNB1(+):10bp after exon 12	Intron of EXOSC7(+):5Kb before exon 2		GRCh37	DUPLICATION	10	10	Protein Fusion: out of frame  {EXOSC7:CTNNB1}	PRECISE	5to3	EXOSC7 (NM_015004) - CTNNB1 (NM_001904) Rearrangement : c.58-5293:EXOSC7_c.1954+10:CTNNB1dup	yes	unknown	3747339	6410	6323	0	10
P-0071086-T01-IM7	SOMATIC	CTR9	CTR9	11	11	712745	10789555	Intron of EPS8L2(+):2Kb after exon 4	Intron of CTR9(+):17bp after exon 14		GRCh37	INVERSION	10	67	CTR9-intragenic	PRECISE	5to5	CTR9 (NM_014633) rearrangement: chr11:g.712745_c.1872+17:CTR9inv	yes	unknown	10076810	57556	81302	0	86
P-0060580-T01-IM7	SOMATIC	CTR9	GALNT18	11	11	10795769	11516996	Intron of CTR9(+):53bp after exon 22	Intron of GALNT18(-):47Kb before exon 2		GRCh37	INVERSION	10	18	Protein Fusion: out of frame  {CTR9:GALNT18}	PRECISE	3to3	CTR9 (NM_014633) rearrangement: c.2885+53_g.11516996inv	yes	unknown	721227	7392	9210	0	18
P-0014859-T01-IM6	SOMATIC	CTRC	NTRK1								GRCh37				CTRC-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: CTRC-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes CTRC Exon1 (NM_007272) and NTRK1 Exon8 (NM_002529).	yes	unknown					
P-0014859-T01-IM6	SOMATIC	CTRC	NTRK1	1	1	15766843	156841592	Exon 2 of CTRC(+)	Intron of NTRK1(+): 45bp after exon 8		GRCh37	DELETION			Protein fusion: mid-exon (CTRC-NTRK1)	PRECISE	3to5	CTRC (NM_007272)  - NTRK1 (NM_002529) rearrangement: c.88:CTRC_c.850+45:NTRK1del			141074749	1017341	997809	0	158
P-0000252-T01-IM3	SOMATIC	CUBN	RET	10	10	16947846	43610494	Intron of CUBN(-): 356bp after exon 50	Intron of RET(+): 310bp after exon 11		GRCh37	DUPLICATION	30	17	Antisense fusion	PRECISE	5to3		yes	unknown	26662648	60571	55502	0	19
P-0005529-T01-IM5	SOMATIC	CUL1	EZH2	7	7	148489819	148507391	Exon 17 of CUL1(+)	Intron of EZH2(-): 34bp after exon 17		GRCh37	DELETION	41	23	Antisense fusion	PRECISE	3to5	EZH2 (NM_004456) - CUL1 (NM_003592) rearrangement: c.2029+34:EZH2_c.1808:CUL1del	yes	unknown	17572	5231	4360	0	23
P-0011147-T01-IM5	SOMATIC	CUL1	EZH2	7	7	148460625	148506176	Intron of CUL1(+): 3Kb before exon 8	Exon 19 of EZH2(-)		GRCh37	DELETION	61	58	Antisense fusion	PRECISE	3to5	CUL1 (NM_003592) - EZH2 (NM_004456) rearrangement : c.790-3028:CUL1_c.2182:EZH2del	yes	unknown	45551	3431	3152	0	56
P-0039648-T03-IM6	SOMATIC	CUL1	BRAF	7	7	140492893	148460538	Intron of BRAF(-):1Kb after exon 8	Intron of CUL1(+):3Kb after exon 7		GRCh37	INVERSION	10	79	Protein Fusion: in frame  {CUL1:BRAF}	PRECISE	3to3	CUL1 (NM_003592) - BRAF (NM_004333) fusion: c.789+2950:CUL1_c.1140+1215:BRAFinv	yes	unknown	7967645	47341	97947	0	78
P-0036253-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148481603	148511177	Intron of CUL1(+):434bp after exon 11	Exon 15 of EZH2(-)		GRCh37	INVERSION	10	85	Protein Fusion: mid-exon  {CUL1:EZH2}	PRECISE	3to3	CUL1 (NM_003592) - EZH2 (NM_004456) rearrangement: c.1298+434:CUL1_c.1725:EZH2inv	yes	unknown	29574	6137	6334	0	83
P-0058046-T01-IM6	SOMATIC	CUL3	CUL3	7	2	103643204	225371789	IGR: 124Kb before ORC5(-)	Intron of CUL3(-):69bp before exon 7		GRCh37	TRANSLOCATION	0	10	CUL3-intragenic	IMPPRECISE	5to3	CUL3 (NM_003590) rearrangement: t(2;7)(q36.2;q22.1)(chr2:g.225371789::chr7:g.103643204)	yes	unknown	0	0	0	0	10
P-0010741-T01-IM5	SOMATIC	CUL3		2	2	225008101	225370654	IGR: 168Kb before SERPINE2(-)	Intron of CUL3(-): 19bp after exon 8		GRCh37	DELETION			CUL3-intragenic	PRECISE	3to5	CUL3 (NM_003590) rearrangement : c.1206+19:CUL3_chr2:g.225008101del			362553	15830	15370	0	4
P-0012204-T01-IM5	SOMATIC	CUL3		2	2	225177488	225365168	IGR: 66Kb before FAM124B(-)	Exon 11 of CUL3(-)		GRCh37	DELETION			CUL3-intragenic	PRECISE	3to5	CUL3 (NM_003590) rearrangement: chr2:g.225177488_c.1522:CUL3del			187680	10004	4448	0	22
P-0027079-T01-IM6	SOMATIC	CUL3		11	2	6857883	225378244	IGR: 9Kb before OR10A5(+)	Exon 5 of CUL3(-)		GRCh37	TRANSLOCATION			CUL3-intragenic	PRECISE	5to5	CUL3 (NM_003590) rearrangement: t(2;11)(q36.2;p15.4)(chr2:g.225378244::chr11:g.6857883)			0	0	0	0	37
P-0061305-T03-IM7	SOMATIC	CUL3	CUL3	2	2	225357090	225379509	Intron of CUL3(-):3Kb after exon 13	Intron of CUL3(-):20bp before exon 4		GRCh37	DUPLICATION	0	6	Duplication of 10 exons : in frame	IMPPRECISE	5to3	CUL3 (NM_003590) rearrangement: c.379-20_c.1842+3459dup	yes	unknown	22419	14706	21624	0	6
P-0052539-T01-IM6	SOMATIC	CUL3	DOCK10	2	2	225422338	225786863	Intron of CUL3(-):37bp after exon 2	Intron of DOCK10(-):5Kb before exon 3		GRCh37	DUPLICATION	10	14	Protein Fusion: in frame  {CUL3:DOCK10}	PRECISE	5to3	CUL3 (NM_003590) - DOCK10 (NM_014689) rearrangement: c.264+38:CUL3_c.244-5362:DOCK10dup	yes	unknown	364525	1061	3059	0	14
P-0004386-T01-IM5	SOMATIC	CUL5	NOTCH1	11	9	107944759	139390931	Intron of CUL5(+): 535bp after exon 10	Exon 34 of NOTCH1(-)		GRCh37	TRANSLOCATION	8	17	Protein fusion: mid-exon (NOTCH1-CUL5)	PRECISE	5to5	NOTCH1 (NM_017617) - CUL5 (NM_003478) rearrangement : t(9;11)(9q34.3;11q22.3)(chr9:g.139390931::chr11:g.107944759)	yes	unknown	0	0	0	0	17
P-0048920-T01-IM6	SOMATIC	CUL5	ATM	11	11	107926063	108186695	Intron of CUL5(+):381bp after exon 7	Intron of ATM(+):42bp before exon 42		GRCh37	DELETION	0	6	Protein Fusion: out of frame  {CUL5:ATM}	IMPPRECISE	3to5	CUL5 (NM_003478) - ATM (NM_000051) rearrangement: c.780+381:CUL5_c.6096-43:ATMdel	yes	unknown	260632	50754	33952	0	10
P-0082781-T02-IM7	SOMATIC	CUX1	CDKN2A	9	7	21971327	101819714	Intron of CDKN2A(-):120bp before exon 2	Intron of CUX1(+):2Kb before exon 11		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CUX1:CDKN2A}	PRECISE	3to3	CUX1 (NM_181552) - CDKN2A (NM_058195) rearrangement: t(7;9)(q22.1;p21.3)(chr7:g.101819714::chr9:g.21971327)			0	0	0	0	37
P-0038806-T01-IM6	SOMATIC	CUX2	ETV6	12	12	12008261	111518506	Intron of ETV6(+):2Kb after exon 4	Intron of CUX2(+):46Kb after exon 1		GRCh37	DUPLICATION	3	2	Protein Fusion: out of frame  {CUX2:ETV6}	PRECISE	5to3	CUX2 (NM_015267) - ETV6 (NM_001987) Rearrangement:.c.63+46462:CUX2_c.463+1766:ETV6	yes	unknown	99510245	596416	331286	0	0
P-0002890-T01-IM3	SOMATIC	CXorf26	FGFR3	X	4	75468339	1803169	IGR: 76Kb before CXorf26(+)	Exon 5 of FGFR3(+)		GRCh37	TRANSLOCATION	53	40	FGFR3-CXorf26 fusion	PRECISE	3to3		yes	unknown	0	0	0	0	40
P-0031393-T02-IM6	SOMATIC	CYB5R3	EWSR1	22	22	29687336	43030399	Intron of EWSR1(+):217bp before exon 10	Intron of CYB5R3(-):2Kb after exon 3		GRCh37	INVERSION	10	33	Protein Fusion: out of frame  {CYB5R3:EWSR1}	PRECISE	5to5	CYB5R3 (NM_001171660) - EWSR1 (NM_013986) rearrangement: c.252+2322:CYB5R3_c.993-218:EWSR1inv	yes	unknown	13343063	158227	167303	0	40
P-0074718-T01-IM7	SOMATIC	ZFTRAF1	RECQL4	8	8	145681597	145739588	Intron of CYHR1(-):3Kb before exon 3	Exon 11 of RECQL4(-)		GRCh37	DUPLICATION	10	11	Protein Fusion: mid-exon  {ZFTRAF1:RECQL4}	PRECISE	5to3	CYHR1 (NM_138496) - RECQL4 (NM_004260) rearrangement: c.247-2754:CYHR1_c.1863:RECQL4dup	yes	unknown	57991	13462	21871	0	11
P-0064227-T01-IM7	SOMATIC	CYLD	TRIB1	16	8	50783903	126661345	Exon 3 of CYLD(+)	IGR: 217Kb before TRIB1(+)		GRCh37	TRANSLOCATION	10	14	CYLD-intragenic	PRECISE	5to5	CYLD (NM_001042355) rearrangement: t(8;16)(q24.13;q12.1)(chr8:g.126661345::chr16:g.50783903)	yes	unknown	0	0	0	0	16
P-0015510-T01-IM6	SOMATIC	CYLD		16	16	50783857	54625586	Exon 4 of CYLD(+)	IGR: 308Kb before IRX3(-)		GRCh37	DELETION			CYLD-intragenic	PRECISE	3to5	CYLD (NM_001042355) Rearrangement : c.248:CYLD_chr16:g.54625586del			3841729	37897	21911	0	28
P-0018487-T01-IM6	SOMATIC	CYLD	SPACA7	16	13	50813791	113008750	Exon 8 of CYLD(+)	IGR: 22Kb before SPACA7(+)		GRCh37	TRANSLOCATION			CYLD-SPACA7 Fusion	PRECISE	3to5	CYLD (NM_001042355) - SPACA7 (NM_145248) rearrangement: t(13, 16)( q12.1, q34)(chr13:g.113008750::chr16:g.50813791)			0	0	0	0	9
P-0029294-T01-IM6	SOMATIC	CYLD		16	16	50783984	50785671	Exon 3 of CYLD(+)	Exon 4 of CYLD(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	CYLD (NM_001042355) Rearrangement: c.375_c.661del			1687	3028	2737	0	34
P-0085999-T01-IM7	SOMATIC	CYLD	CNOT1	16	16	50816371	58583108	Exon 10 of CYLD(+)	Intron of CNOT1(-):514bp after exon 25		GRCh37	INVERSION			Protein Fusion: mid-exon  {CYLD:CNOT1}	PRECISE	3to3	CYLD (NM_001042355) - CNOT1 (NM_016284) rearrangement: c.1811:CYLD_c.3522+515:CNOT1inv			7766737	60958	53384	0	32
P-0023388-T01-IM6	SOMATIC	CYLD	TACC1	16	8	50826532	38590620	Exon 15 of CYLD(+)	5-UTR of TACC1(+):87Kb before coding start		GRCh37	TRANSLOCATION	10	101	Protein Fusion: mid-exon  {CYLD:TACC1}	PRECISE	3to5	CYLD (NM_001042355) rearrangement: t(8;16)(p11.22;q12.1)(chr8:g.38590620::chr16:g.50826532)	yes	unknown	0	0	0	0	106
P-0078349-T01-IM7	SOMATIC	CYP2S1	AXL	19	19	41701750	41745214	Intron of CYP2S1(+):1Kb after exon 2	Exon 9 of AXL(+)		GRCh37	DELETION	7	3	Protein Fusion: mid-exon  {CYP2S1:AXL}	PRECISE	3to5	CYP2S1 (NM_030622) - AXL (NM_021913) rearrangement: c.343+1136:CYP2S1_c.1280:AXLdel	yes	unknown	43464	11101	17104	0	3
P-0069919-T01-IM7	SOMATIC	CYP4F2	MGA	19	15	15990995	42053924	Intron of CYP4F2(-):288bp before exon 10	Intron of MGA(+):12bp before exon 21		GRCh37	TRANSLOCATION	10	14	Protein Fusion: out of frame  {CYP4F2:MGA}	PRECISE	5to5	CYP4F2 (NM_001082) - MGA (NM_001164273) rearrangement: t(15;19)(q15.1;p13.12)(chr15:g.42053924::chr19:g.15990995)	yes	unknown	0	0	0	0	14
P-0005047-T01-IM5	SOMATIC	CYP4Z1	TMPRSS2	21	1	42874735	47561132	Intron of TMPRSS2(-): 5Kb before exon 2	Intron of CYP4Z1(+): 791bp after exon 7		GRCh37	TRANSLOCATION			Protein fusion: out of frame (CYP4Z1-TMPRSS2)	PRECISE	3to3	CYP4Z1 (NM_178134) - TMPRSS2 (NM_001135099) rearrangement : t(1;21)(1p33;21q22.3)(chr1:g.47561132::chr21:g.42874735)			0	0	0	0	33
P-0048227-T01-IM6	SOMATIC	DAB1	NOTCH2	1	1	57612167	120465694	Intron of DAB1(-):1Kb before exon 5	Intron of NOTCH2(-):293bp before exon 27		GRCh37	DUPLICATION	0	5	Protein Fusion: out of frame  {DAB1:NOTCH2}	IMPPRECISE	5to3	DAB1 (NM_021080) - NOTCH2 (NM_024408) rearrangement: c.68-1065:DAB1_c.4860-293:NOTCH2dup	yes	unknown	62853527	193299	511343	0	5
P-0049979-T01-IM6	SOMATIC	DAXX	ISG20L2	6	1	33286569	156682800	Exon 8 of DAXX(-)	IGR: 10Kb before ISG20L2(-)		GRCh37	TRANSLOCATION	10	86	DAXX-intragenic	PRECISE	3to5	DAXX (NM_001141970) rearrangement: t(1;6)(q23.1;p21.32)(chr1:g.156682800::chr6:g.33286569)	yes	unknown	0	0	0	0	93
P-0044902-T01-IM6	SOMATIC	DAXX	TBC1D22B	6	6	33289300	37277191	Exon 3 of DAXX(-)	Intron of TBC1D22B(+):4Kb before exon 9		GRCh37	DELETION	10	25	DAXX-intragenic	PRECISE	3to5	DAXX (NM_001141970) rearrangement: c.288:DAXX_chr6:g.37277191del	yes	unknown	3987891	25804	37377	0	26
P-0065979-T01-IM7	SOMATIC	DAXX	FSHR	6	2	33288920	49596344	Exon 3 of DAXX(-)	IGR: 407Kb before FSHR(-)		GRCh37	TRANSLOCATION	10	5	DAXX-intragenic	PRECISE	5to3	DAXX (NM_001141970) rearrangement: t(2;6)(p16.3;p21.32)(chr2:g.49596344::chr6:g.33288920)	yes	unknown	0	0	0	0	5
P-0072026-T01-IM7	SOMATIC	DAXX	DAXX	6	6	30048006	33288104	IGR: 10Kb before RNF39(-)	Intron of DAXX(-):52bp after exon 4		GRCh37	INVERSION	10	31	DAXX-intragenic	PRECISE	5to5	DAXX (NM_001141970) rearrangement: c.1287+53:DAXX_chr6:g.30048006inv	yes	unknown	3240098	226148	550518	0	32
P-0018588-T02-IM6	SOMATIC	DAXX		6	6	33286511	34097868	3-UTR of DAXX(-):8bp after coding stop	Intron of GRM4(-):3Kb after exon 2		GRCh37	INVERSION			DAXX-intragenic	PRECISE	5to5	DAXX (NM_001141970) rearrangement: c.*9:DAXX_chr6:g.34097868inv			811357	22688	30107	0	10
P-0035502-T01-IM6	SOMATIC	DAXX		6	6	33287873	33806571	Exon 5 of DAXX(-)	IGR: 44Kb before MLN(-)		GRCh37	INVERSION			DAXX-intragenic	PRECISE	5to5	DAXX (NM_001141970) rearrangement: c.1416:DAXX_chr6:g.33806571inv			518698	11169	14197	0	8
P-0058393-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33288631	33293006	Exon 3 of DAXX(-)	Promoter of DAXX(-):7Kb from tx start		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	DAXX (NM_001141970) rearrangement: c.957:DAXX_chr6:g.33293006del	yes	unknown	4375	9342	8985	0	20
P-0006640-T01-IM5	SOMATIC	DAZAP2	ERBB3	12	12	51631007	56493491	Promoter of DAZAP2(+): 2Kb from tx start	Exon 24 of ERBB3(+)		GRCh37	DELETION	49	36	Protein fusion: mid-exon (DAZAP2-ERBB3)	PRECISE	3to5	DAZAP2 (NM_001136266) - ERBB3 (NM_001982) rearrangement : c.-1685: DAZAP2_c.2899:ERBB3dup	yes	unknown	4862484	71606	68734	0	34
P-0050196-T01-IM6	SOMATIC	DBI	BRAF								GRCh37				DBI-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: DBI-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes DBI Exon4 (NM_001282634) and BRAF Exon10 (NM_004333). DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982  Note: The isoform was detected with low frequency.	yes	unknown					
P-0050196-T01-IM6	SOMATIC	DBI	BRAF	7	2	140486284	120128894	Intron of BRAF(-):1Kb after exon 9	Intron of DBI(+):516bp after exon 3		GRCh37	TRANSLOCATION	10	229	Protein Fusion: in frame  {DBI:BRAF}	PRECISE	3to3	DBI (NM_001178017) - BRAF (NM_004333) fusion: t(2;7)(q14.2;q34)(chr2:g.120128894::chr7:g.140486284)	yes	unknown	0	0	0	1	224
P-0071496-T01-IM7	SOMATIC	DCAF12	CD274	9	9	5466282	34121347	Intron of CD274(+):487bp before exon 6	Intron of DCAF12(-):4Kb after exon 2		GRCh37	INVERSION	10	2	Protein Fusion: out of frame  {DCAF12:CD274}	PRECISE	5to5	DCAF12 (NM_015397) - CD274 (NM_014143) rearrangement: c.333+3674:DCAF12_c.791-488:CD274inv	yes	unknown	28655065	141109	109016	0	7
P-0037284-T01-IM6	SOMATIC	DCTN1	ALK								GRCh37				DCTN1-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: DCTN1-ALK fusion. Note: The rearrangement is an in-frame fusion between genes DCTN1 Exon26 (NM_004082) and ALK Exon20 (NM_004304).	yes	unknown					
P-0037284-T01-IM6	SOMATIC	DCTN1	ALK	2	2	29447891	74590929	Intron of ALK(-):435bp after exon 19	Intron of DCTN1(-):375bp before exon 24		GRCh37	DELETION	10	5	Protein Fusion: in frame  {DCTN1:ALK}	PRECISE	3to5	DCTN1 (NM_004082) - ALK (NM_004304) fusion (DCTN1 exons 1-26 fused to ALK exons 20-29: c.3197-174:DCTN1_c.3172+436:ALKdel	yes	unknown	45143038	250249	357751	0	5
P-0053824-T01-IM6	SOMATIC	DCUN1D1	DCUN1D1	3	3	114138833	182681733	3-UTR of ZBTB20(-):481Kb after coding stop	Exon 3 of DCUN1D1(-)		GRCh37	INVERSION	10	5	DCUN1D1-intragenic	PRECISE	5to5	DCUN1D1 (NM_020640) rearrangement: c.325:DCUN1D1_chr3:g.114138833inv	yes	unknown	68542900	273773	277685	0	7
P-0077835-T02-IM7	SOMATIC	DCUN1D1	DCUN1D1	3	3	44662334	182698236	3-UTR of ZNF197-AS1(-):4Kb after coding stop	Intron of DCUN1D1(-):38bp after exon 1		GRCh37	DELETION	10	38	DCUN1D1-intragenic	PRECISE	3to5	DCUN1D1 (NM_020640) rearrangement: c.3+39:DCUN1D1_chr3:g.44662334del	yes	unknown	138035902	821614	960496	0	38
P-0084733-T01-IM7	SOMATIC	DDC		7	7	50467890	50608435	Exon 8 of IKZF1(+)	Intron of DDC(-):709bp before exon 3		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	DDC (NM_002528) rearrangement: chr7:g.50467890_c.202-709:DDCdel			140545	3387	2848	0	3
P-0016795-T01-IM6	SOMATIC	DDC	EGFR	7	7	50601499	55222204	Intron of DDC(-):4Kb after exon 4	Intron of EGFR(+):359bp after exon 7		GRCh37	INVERSION			Protein Fusion: out of frame  {DDC:EGFR}	PRECISE	5to5	DDC (NM_000790) - EGFR (NM_005228) Rearrangement : c.435+4059:DDC_c.889+359:EGFRinv			4620705	12348	45256	0	112
P-0071122-T01-IM7	SOMATIC	DDI2	SPEN	1	1	15948092	16260471	Intron of DDI2(+):4Kb after exon 1	Exon 11 of SPEN(+)		GRCh37	DELETION			Protein Fusion: mid-exon  {DDI2:SPEN}	PRECISE	3to5	DDI2 (NM_032341) - SPEN (NM_015001) rearrangement: c.138+3789:DDI2_c.7736:SPENdel			312379	41771	88848	0	37
P-0025165-T01-IM6	SOMATIC	DDR2	NUF2	1	1	162670587	163313668	5-UTR of DDR2(+):18Kb before coding start	Intron of NUF2(+):8bp after exon 10		GRCh37	INVERSION	10	40	Antisense Fusion	PRECISE	3to3	DDR2 (NM_006182) - NUF2 (NM_031423) rearrangement: c.-27-18240:DDR2_c.807+8:NUF2inv	yes	unknown	643081	32106	31091	0	40
P-0017478-T01-IM6	SOMATIC	DDR2	DDR2	1	1	162729024	162749790	Intron of DDR2(+):561bp before exon 8	Intron of DDR2(+):111bp before exon 18		GRCh37	INVERSION	10	6	DDR2-intragenic	PRECISE	5to5	DDR2 (NM_006182) Rearrangement : c.672-562_c.2434-112inv	yes	unknown	20766	10150	20143	0	6
P-0037322-T01-IM6	SOMATIC	DDR2	DDR2	2	1	240384262	162740087	IGR: 111Kb before MIR2467(-)	Intron of DDR2(+):4bp before exon 12		GRCh37	TRANSLOCATION	10	20	DDR2-intragenic	PRECISE	5to5	DDR2 (NM_006182) rearrangement: t(1;2)(q23.3;q37.3)(chr1:g.162740087::chr2:g.240384262)	yes	unknown	0	0	0	0	22
P-0019153-T01-IM6	SOMATIC	DDR2		6	1	112896512	162730897	IGR: 228Kb before RFPL4B(+)	Intron of DDR2(+):103bp before exon 9		GRCh37	TRANSLOCATION			DDR2-intragenic	PRECISE	5to5	DDR2 (NM_006182)  rearrangement: t(1;6)(q23.3;q21)(chr1:g.162730897::chr6:g.112896512)			0	0	0	0	7
P-0009364-T01-IM5	SOMATIC	DEPDC6	COL14A1	8	8	120994493	121195626	Intron of DEPDC6(+): 17Kb after exon 4	Intron of COL14A1(+): 13Kb before exon 6		GRCh37	DELETION	81	102	Protein fusion: in frame (DEPDC6-COL14A1)	PRECISE	3to5	DEPTOR (NM_022783) - COL14A1(NM_021110) rearrangement: c.604+16843:DEPTOR_c.437-13404:COL14A1del	yes	unknown	201133	94	133	0	159
P-0037338-T01-IM6	SOMATIC	DEPDC7	SMARCB1	22	11	24133958	33040227	Exon 2 of SMARCB1(+)	Intron of DEPDC7(+):2Kb after exon 1		GRCh37	TRANSLOCATION	0	13	Protein Fusion: mid-exon  {DEPDC7:SMARCB1}	IMPPRECISE	5to3	DEPDC7 (NM_001077242) - SMARCB1 (NM_003073) rearrangement: t(11;22)(p13;q11.23)(chr11:g.33040227::chr22:g.24133958)	yes	unknown	0	0	0	0	13
P-0048530-T01-IM6	SOMATIC	DERA	GLI1	12	12	16116098	57865604	Intron of DERA(+):217bp after exon 5	Exon 12 of GLI1(+)		GRCh37	DELETION	0	33	Protein Fusion: mid-exon  {DERA:GLI1}	IMPPRECISE	3to5	DERA (NM_015954) - GLI1 (NM_005269) rearrangement: c.508+217:DERA_c.3081:GLI1del	yes	unknown	41749506	397667	357989	0	33
P-0022820-T01-IM6	SOMATIC	DGAT1	RECQL4	8	8	145550735	145740553	Promoter of DGAT1(-):12Kb from tx start	Exon 8 of RECQL4(-)		GRCh37	DUPLICATION	10	14	Protein Fusion: mid-exon  {DGAT1:RECQL4}	PRECISE	5to3	DGAT1 (NM_012079) - RECQL4 (NM_004260) rearrangement: c.-436:DGAT1_c.1464:RECQL4dup	yes	unknown	189818	29236	41047	0	14
P-0068791-T02-IM7	SOMATIC	DGKA	GLI1								GRCh37				DGKA-GLI1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: DGKA-GLI1 fusion. Note: The rearrangement is an in-frame fusion between genes DGKA Exon17 (NM_201554) and GLI1 Exon3 (NM_005269).  Note1: This fusion between DGKA exon 17 and GLI1 exon 3 is similar to that detected on a DNA level by corresponding MSK-IMPACT results M21-29776. The functional significance of this event is unknown.	yes	unknown					
P-0068791-T02-IM7	SOMATIC	DGKA	GLI1	12	12	56342725	57857750	Intron of DGKA(+):3Kb before exon 19	Intron of GLI1(+):31bp before exon 3		GRCh37	DELETION	10	49	Protein Fusion: in frame  {DGKA:GLI1}	PRECISE	3to5	DGKA (NM_201554) - GLI1 (NM_005269) rearrangement: c.1427-2682:DGKA_c.101-32:GLI1del	yes	unknown	1515025	78401	135269	0	64
P-0018108-T01-IM6	SOMATIC	DGKH	FH	13	1	42830153	241667339	5-UTR of DGKH(+):563bp before coding start	Intron of FH(-):2bp after exon 7		GRCh37	TRANSLOCATION	0	20	Transcript Fusion {FH:DGKH}	IMPPRECISE	5to5	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241667340::chr13:g.42830153)	yes	unknown	0	0	0	0	27
P-0021177-T01-IM6	SOMATIC	DHH	KMT2D	12	12	49435103	49487152	Exon 31 of KMT2D(-)	Intron of DHH(-):840bp after exon 1		GRCh37	DELETION	10	10	Protein Fusion: mid-exon  {DHH:KMT2D}	PRECISE	3to5	DHH (NM_021044) - KMT2D (NM_00348) rearrangement: c.303+841:DHH_c.6450:KMT2Ddel	yes	unknown	52049	101538	73032	0	10
P-0075464-T02-IM7	SOMATIC	DHX16	MUTYH	6	1	30633678	45798602	Intron of DHX16(-):168bp before exon 5	Exon 6 of MUTYH(-)		GRCh37	TRANSLOCATION	10	17	Protein Fusion: mid-exon  {DHX16:MUTYH}	PRECISE	5to3	DHX16 (NM_003587) - MUTYH (NM_001128425) rearrangement: t(1;6)(p34.1;p21.33)(chr1:g.45798602::chr6:g.30633678)	yes	unknown	0	0	0	0	19
P-0001338-T01-IM3	SOMATIC	DHX35	TOP1	20	20	37658302	39726899	Intron of DHX35(+): 1Kb before exon 20	Exon 11 of TOP1(+)		GRCh37	DELETION	89	89	Protein fusion: mid-exon (DHX35-TOP1)	PRECISE	3to5		yes	unknown	2068597	14544	22303	0	94
P-0051068-T01-IM6	SOMATIC	DIAPH2	ALK								GRCh37				DIAPH2-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: DIAPH2-ALK fusion. Note: The rearrangement is an in-frame fusion between genes DIAPH2 Exon26 (NM_006729) and ALK Exon20 (NM_004304).	yes	unknown					
P-0051068-T01-IM6	SOMATIC	DIAPH2	ALK	X	2	96713620	29447566	Intron of DIAPH2(+):29Kb after exon 26	Intron of ALK(-):760bp after exon 19		GRCh37	TRANSLOCATION	10	69	Protein Fusion: in frame  {DIAPH2:ALK}	PRECISE	3to3	DIAPH2 (NM_006729) - ALK (NM_004304) fusion: t(2;X)(p23.2;q21.33)(chr2:g.29447566::chrX:g.96713620)	yes	unknown	0	0	0	0	67
P-0071712-T01-IM7	SOMATIC	DICER1	DICER1	14	14	88987715	95581926	Intron of PTPN21(-):4Kb before exon 3	Intron of DICER1(-):77bp after exon 11		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	DICER1 (NM_030621) rearrangement: c.1907+78:DICER1_chr14:g.88987715inv	yes	unknown	6594211	48972	71050	0	19
P-0033184-T01-IM6	SOMATIC	DICER1	DICER1	14	14	95557080	95572426	Intron of DICER1(-):80bp before exon 29	Exon 20 of DICER1(-)		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	DICER1 (NM_030621) rearrangement: c.2939_c.5604-80del	yes	unknown	15346	19664	16929	0	5
P-0027657-T01-IM6	SOMATIC	DICER1		14	14	58473233	95562746	Intron of C14orf37(-):1Kb before exon 7	Exon 25 of DICER1(-)		GRCh37	INVERSION			DICER1-intragenic	PRECISE	3to3	DICER1 (NM_030621) rearrangement: c.4511_chr14:g.58473233inv			37089513	54020	83968	0	13
P-0071861-T01-IM7	SOMATIC	DIDO1	RTEL1	20	20	61542435	62309449	Exon 3 of DIDO1(-)	Intron of RTEL1(+):48bp before exon 11		GRCh37	INVERSION	5	4	Protein Fusion: mid-exon  {DIDO1:RTEL1}	PRECISE	5to5	DIDO1 (NM_001193369) - RTEL1 (NM_032957) rearrangement: c.530:DIDO1_c.992-49:RTEL1inv	yes	unknown	767014	15043	65020	0	4
P-0001784-T01-IM3	SOMATIC	DIP2B	NOTCH4	12	6	50969571	32163293	Intron of DIP2B(+): 50Kb before exon 2	Exon 30 of NOTCH4(-)		GRCh37	TRANSLOCATION	95	69	Protein fusion: mid-exon (DIP2B-NOTCH4)	PRECISE	3to3	DIP2B (NM_173602) - NOTCH4 (NM_004557) Translocation :  t(12;6)(q13.12;p21.32)(chr12:g.50969571::chr6:32163293)	yes	unknown	0	0	0	0	67
P-0040259-T01-IM6	SOMATIC	DIS3	TBC1D4	13	13	73347814	75899289	Intron of DIS3(-):7bp after exon 8	Intron of TBC1D4(-):752bp before exon 11		GRCh37	INVERSION	10	8	Antisense Fusion	PRECISE	5to5	DIS3 (NM_014953) rearrangement: c.1239+8:DIS3_chr13:g.75899289inv	yes	unknown	2551475	10102	8528	0	8
P-0029597-T01-IM6	SOMATIC	DIS3		13	13	73336384	73643525	Intron of DIS3(-):109bp before exon 17	Intron of KLF5(+):6Kb after exon 3		GRCh37	DELETION			DIS3-intragenic	PRECISE	3to5	DIS3 (NM_014953) rearrangement: c.2128-109:DIS3_chr13:g.73643525del			307141	17006	18687	0	3
P-0048115-T01-IM6	SOMATIC	DIS3		13	13	32297113	73344958	IGR: 17Kb before RXFP2(+)	Intron of DIS3(-):83bp after exon 13		GRCh37	DELETION			DIS3-intragenic	IMPPRECISE	3to5	DIS3 (NM_014953) rearrangement: c.1755+84:DIS3_chr13:g.32297113del			41047845	115528	350367	0	15
P-0002665-T01-IM3	SOMATIC	DIS3	PIBF1	13	13	73355156	73358073	Intron of DIS3(-): 15bp before exon 2	Intron of PIBF1(+): 214bp after exon 2		GRCh37	DELETION	27	17	PIBF1-DIS3 fusion	PRECISE	3to5		yes	unknown	2917	1718	1415	0	21
P-0018120-T01-IM6	SOMATIC	DISC1FP1	MRE11A	11	11	90538845	94180372	5-UTR of DISC1FP1(+):109Kb before coding start	Intron of MRE11A(-):12bp after exon 15		GRCh37	DELETION	10	7	Antisense Fusion	PRECISE	3to5	MRE11A (NM_005591) Rearrangement: c.1783+13:MRE11A_chr11g.:90538845del	yes	unknown	3641527	7084	6789	0	7
P-0009482-T01-IM5	SOMATIC	DLAT	ANKRD11	16	11	89350623	111905299	Exon 9 of ANKRD11(-)	Intron of DLAT(+): 1Kb after exon 5		GRCh37	TRANSLOCATION			DLAT-ANKRD11 Fusion	PRECISE	3to5	DLAT (NM_001931) - ANKRD11 (NM_013275) rearrangement: t(11;16)(q23.1;q24.3)(chr11:g.111905299::chr16:g.89350623)			0	0	0	0	42
P-0066420-T01-IM7	SOMATIC	DLGAP2	NRG1								GRCh37				DLGAP2-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: DLGAP2-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes DLGAP2 Exon5 (NM_004745) and NRG1 Exon2 (NM_004495).	yes	unknown					
P-0029291-T01-IM6	SOMATIC	DLL4	RAD51	15	15	41022117	41222991	Exon 9 of RAD51(+)	Intron of DLL4(+):111bp after exon 3		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {DLL4:RAD51}	PRECISE	5to3	DLL4 (NM_019074) - RAD51 (NM_002875) Rearrangement: c.394+111:DLL4_c.841:RAD51dup			200874	2148	3276	0	26
P-0014576-T01-IM6	SOMATIC	DNAH9	MAP2K4	17	17	11611081	12044545	Intron of DNAH9(+): 3Kb after exon 26	Exon 11 of MAP2K4(+)		GRCh37	INVERSION	75	58	Antisense fusion	PRECISE	3to3	DNAH9 (NM_001372) - MAP2K4 (NM_003010) rearrangement: c.5552+2579:DNAH9_c.1168:MAP2K4inv	yes	unknown	433464	12610	2598	0	58
P-0067670-T01-IM7	SOMATIC	DNAJB1	MIR639	19	19	14628557	14634069	Intron of DNAJB1(-):393bp after exon 1	IGR: 6Kb before MIR639(+)		GRCh37	DELETION	10	6	DNAJB1-intragenic	PRECISE	3to5	DNAJB1 (NM_006145) rearrangement: c.211+394:DNAJB1_chr19:g.14634069del	yes	unknown	5512	2697	2671	0	8
P-0073294-T01-IM7	SOMATIC	DNAJB1	LOC284395	19	19	14627103	29967593	Intron of DNAJB1(-):121bp before exon 3	3-UTR of LOC284395(-):49Kb after coding stop		GRCh37	INVERSION	10	39	DNAJB1-intragenic	PRECISE	5to5	DNAJB1 (NM_006145) rearrangement: c.793-121:DNAJB1_chr19:g.29967593inv	yes	unknown	15340490	292994	437028	0	40
P-0005065-T02-IM5	SOMATIC	DNAJB1		19	19	14628370	16168702	Intron of DNAJB1(-): 512bp before exon 2	IGR: 10Kb before TPM4(+)		GRCh37	DUPLICATION			DNAJB1-intragenic	PRECISE	5to3	DNAJB1(NM_006145) Rearrangement : c.212-512_chr19:16168702dup			1540332	80636	127395	0	14
P-0009759-T01-IM5	SOMATIC	DNAJB1		19	19	14627300	23268574	Exon 2 of DNAJB1(-)	IGR: 272Kb before ZNF91(-)		GRCh37	INVERSION			DNAJB1-intragenic	PRECISE	5to5	DNAJB1 (NM_006145) rearrangement: c.770_ chr19:g.23268574del			8641274	321473	333841	0	27
P-0012562-T01-IM5	SOMATIC	DNAJB1		19	2	14627434	192746391	Exon 2 of DNAJB1(-)	IGR: 47Kb before SDPR(-)		GRCh37	TRANSLOCATION			DNAJB1-intragenic	IMPRECISE	5to3	DNAJB1 (NM_006145) rearrangement: t(2;19)(q32.3;p13.12)(chr2:g.192746391::chr19:g.14627434)			0	0	0	0	13
P-0024680-T01-IM6	SOMATIC	DNAJB1		19	19	14628395	54554585	Intron of DNAJB1(-):537bp before exon 2	Intron of VSTM1(-):9Kb before exon 2		GRCh37	INVERSION			DNAJB1-intragenic	PRECISE	3to3	DNAJB1 (NM_006145) Rearrangement: c.212-537:DNAJB1_c.394+79:VSTM1inv			39926190	564936	475412	0	3
P-0083046-T01-IM7	SOMATIC	DNAJB1		19	11	14628103	111258858	Intron of DNAJB1(-):245bp before exon 2	IGR: 26Kb before LOC100132078(-)		GRCh37	TRANSLOCATION			DNAJB1-intragenic	PRECISE	3to3	DNAJB1 (NM_006145) rearrangement: t(11;19)(q23.1;p13.12)(chr11:g.111258858::chr19:g.14628103)			0	0	0	0	44
P-0086387-T01-IM7	SOMATIC	DNAJB1		19	19	14628553	14633987	Intron of DNAJB1(-):397bp after exon 1	IGR: 6Kb before MIR639(+)		GRCh37	DELETION			DNAJB1-intragenic	PRECISE	3to5	DNAJB1 (NM_006145) rearrangement: c.211+398:DNAJB1_chr19:g.14633987del			5434	2988	5329	0	4
P-0025693-T01-IM6	SOMATIC	DNAJB13	PODNL1	19	19	14062885	14628950	Intron of PODNL1(-):1Kb after exon 1	Exon 1 of DNAJB1(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {DNAJB1:PODNL1}	PRECISE	3to5	DNAJB13 (NM_153614) - PODNL1 (NM_001146254) rearrangement: c.211+1:DNAJB1_c.18+1046:PODNL1del			566065	11313	11448	0	50
P-0036200-T01-IM6	SOMATIC	DNAJC27-AS1	ASXL2	2	2	25223246	25991875	5-UTR of DNAJC27-AS1(+):39Kb before coding start	Intron of ASXL2(-):138bp before exon 6		GRCh37	INVERSION	0	7	Transcript Fusion {DNAJC27-AS1:ASXL2}	IMPPRECISE	3to3	ASXL2 (NM_018263) rearrangement: c.505-138:ASXL2_chr2:g.25223246inv	yes	unknown	768629	63975	81953	0	7
P-0036723-T01-IM6	SOMATIC	DNM2	SMARCA4	19	19	10941208	11132428	Intron of DNM2(+):154bp after exon 19	Exon 19 of SMARCA4(+)		GRCh37	DELETION	10	46	Protein Fusion: mid-exon  {DNM2:SMARCA4}	PRECISE	3to5	DNM2 (NM_001005361) - SMARCA4 (NM_003072) fusion: c.2543+154:DNM2_c.2644:SMARCA4del	yes	unknown	191220	53786	61908	0	46
P-0032073-T01-IM6	SOMATIC	DNMT1	ZNF69	19	19	10264887	12012730	Intron of DNMT1(-):81bp after exon 21	Intron of ZNF69(+):2Kb before exon 2		GRCh37	DUPLICATION	10	10	Antisense Fusion	PRECISE	5to3	DNMT1 (NM_001379) Rearrangement: c.1971+82:DNMT1_chr19:g.12012730dup	yes	unknown	1747843	129830	171621	0	43
P-0048162-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10247820	10250249	Exon 36 of DNMT1(-)	Intron of DNMT1(-):102bp after exon 33		GRCh37	INVERSION	10	19	Antisense Fusion	PRECISE	5to5	DNMT1 (NM_001379) rearrangement: c.3900+103_c.4382inv	yes	unknown	2429	7836	10358	0	22
P-0066292-T03-IM7	SOMATIC	DNMT1	DNMT1	19	19	5452652	10270213	Promoter of ZNRF4(+):3Kb from tx start	Intron of DNMT1(-):120bp after exon 16		GRCh37	DELETION	10	29	Antisense Fusion	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.1232+121:DNMT1_chr19:g.5452652del	yes	unknown	4817561	158966	178806	0	29
P-0063629-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10244478	10246409	Intron of DNMT1(-):101bp before exon 40	Intron of DNMT1(-):2bp after exon 38		GRCh37	DELETION	0	64	Deletion of 1 exon : out of frame	IMPPRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.4725+3_c.4817-101del	yes	unknown	1931	2153	4215	0	67
P-0016308-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10265137	10302207	Exon 21 of DNMT1(-)	Intron of DNMT1(-):3Kb after exon 1		GRCh37	DELETION	10	22	Deletion within transcript : mid-exon	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.1803_c.80+3289del	yes	unknown	37070	27578	48086	0	23
P-0000631-T03-IM6	SOMATIC	DNMT1	CD97	19	19	10244973	14487154	Exon 39 of DNMT1(-)	IGR: 5Kb before CD97(+)		GRCh37	DELETION	10	177	DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.4736:DNMT1_chr19:g.14487154del	yes	unknown	4242181	267002	380928	0	207
P-0046757-T01-IM6	SOMATIC	DNMT1	SSBP4	19	19	10244496	18537515	Intron of DNMT1(-):119bp before exon 40	Intron of SSBP4(+):645bp before exon 2		GRCh37	DELETION	10	25	DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.4817-119:DNMT1_chr19:g.18537515del	yes	unknown	8293019	480668	534527	0	27
P-0018942-T03-IM6	SOMATIC	DNMT1	DNMT1	19	19	10246928	10281905	Exon 37 of DNMT1(-)	Intron of DNMT1(-):2Kb after exon 8		GRCh37	INVERSION	10	24	DNMT1-intragenic	PRECISE	3to3	DNMT1 (NM_001379) rearrangement: c.720+1861_c.4477inv	yes	unknown	34977	48421	57193	0	24
P-0052366-T02-IM6	SOMATIC	DNMT1	DNMT1	19	19	8609799	10283940	Intron of MYO1F(-):451bp before exon 14	Intron of DNMT1(-):90bp before exon 8		GRCh37	INVERSION	10	14	DNMT1-intragenic	PRECISE	3to3	DNMT1 (NM_001379) rearrangement: c.636-90:DNMT1_chr19:g.8609799inv	yes	unknown	1674141	63779	89820	0	14
P-0060828-T01-IM7	SOMATIC	DNMT1	IGFL2	19	19	10265433	46639788	Exon 20 of DNMT1(-)	IGR: 11Kb before IGFL2(+)		GRCh37	INVERSION	10	6	DNMT1-intragenic	PRECISE	3to3	DNMT1 (NM_001379) rearrangement: c.1613:DNMT1_chr19:g.46639788inv	yes	unknown	36374355	972260	1486876	0	6
P-0064231-T01-IM7	SOMATIC	DNMT1	PPAP2A	19	5	10291801	54722868	Intron of DNMT1(-):240bp before exon 3	Intron of PPAP2A(-):1Kb before exon 5		GRCh37	TRANSLOCATION	10	9	DNMT1-intragenic	PRECISE	3to3	DNMT1 (NM_001379) rearrangement: t(5;19)(q11.2;p13.2)(chr5:g.54722868::chr19:g.10291801)	yes	unknown	0	0	0	0	9
P-0066259-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10262091	10264931	Exon 23 of DNMT1(-)	Intron of DNMT1(-):37bp after exon 21		GRCh37	INVERSION	10	35	DNMT1-intragenic	PRECISE	3to3	DNMT1 (NM_001379) rearrangement: c.1971+38_c.2200inv	yes	unknown	2840	2383	3521	0	35
P-0068771-T01-IM7	SOMATIC	DNMT1	PDZRN3-AS1	19	3	10252734	73747117	Exon 29 of DNMT1(-)	IGR: 74Kb before PDZRN3-AS1(+)		GRCh37	TRANSLOCATION	10	43	DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: t(3;19)(p13;p13.2)(chr3:g.73747117::chr19:g.10252734)	yes	unknown	0	0	0	0	46
P-0004850-T01-IM5	SOMATIC	DNMT1		19	19	10246930	10963762	Exon 38 of DNMT1(-)	Intron of C19orf38(+): 3Kb after exon 2		GRCh37	DELETION			DNMT1-intragenic	PRECISE	3to5	DNMT1(NM_001379) Rearrangement :  c.4475:DNMT1_c.340+2519:C19orf38del			716832	129279	162685	0	57
P-0020377-T01-IM6	SOMATIC	DNMT1		19	5	10246818	88595050	Exon 37 of DNMT1(-)	IGR: 410Kb before MEF2C-AS1(+)		GRCh37	TRANSLOCATION			DNMT1-intragenic	PRECISE	5to3	DNMT1 (NM_001379) rearrangement : t(5;19)(q14.3;q13.2)(chr5:g.88595050::chr19:g.10246818)			0	0	0	0	7
P-0025693-T01-IM6	SOMATIC	DNMT1		19	1	10270971	121485157	Intron of DNMT1(-):88bp after exon 13	IGR: 224Kb before EMBP1(+)		GRCh37	TRANSLOCATION			DNMT1-intragenic	PRECISE	5to5	DNMT1 (NM_001379) rearrangement: t(1;19)(p11.2;p13.2)(chr1:g.121485157::chr19:g.10270971)			0	0	0	0	38
P-0033848-T01-IM6	SOMATIC	DNMT1		21	19	32247604	10291039	IGR: 5Kb before KRTAP11-1(-)	Exon 4 of DNMT1(-)		GRCh37	TRANSLOCATION			DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: t(19;21)(p13.2;q22.11)(chr19:g.10291039::chr21:g.32247604)			0	0	0	0	11
P-0037834-T02-IM6	SOMATIC	DNMT1		19	19	10267093	53065226	Exon 17 of DNMT1(-)	IGR: 8Kb before ZNF701(+)		GRCh37	DELETION			DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.1325:DNMT1_chr19:g.53065226del			42798133	978775	902334	0	19
P-0037865-T01-IM6	SOMATIC	DNMT1		19	19	10292669	43650244	Intron of DNMT1(-):47bp after exon 2	IGR: 22Kb before PSG5(-)		GRCh37	INVERSION			DNMT1-intragenic	IMPPRECISE	5to5	DNMT1 (NM_001379) Rearrangement : c.117+48:DNMT1_chr19:g.43650244inv			33357575	832987	795626	0	12
P-0066248-T01-IM7	SOMATIC	DNMT1		19	19	10286287	10979373	Exon 6 of DNMT1(-)	Promoter of CARM1(+):3Kb from tx start		GRCh37	DELETION			DNMT1-intragenic	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: c.529:DNMT1_chr19:g.10979373del			693086	23118	32898	0	21
P-0078212-T01-IM7	SOMATIC	DNMT1	CDC37	19	19	10248484	10510763	Intron of DNMT1(-):23bp after exon 35	Intron of CDC37(-):3Kb after exon 1		GRCh37	DUPLICATION	8	3	Protein Fusion: in frame  {DNMT1:CDC37}	PRECISE	5to3	DNMT1 (NM_001379) - CDC37 (NM_007065) rearrangement: c.4245+24:DNMT1_c.102+3291:CDC37dup	yes	unknown	262279	37623	72592	0	3
P-0061420-T01-IM7	SOMATIC	DNMT1	RAVER1	19	19	10246782	10428287	Intron of DNMT1(-):14bp after exon 37	Intron of RAVER1(-):11bp before exon 13		GRCh37	DUPLICATION	10	37	Protein Fusion: in frame  {DNMT1:RAVER1}	PRECISE	5to3	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.4608+15:DNMT1_c.2125-11:RAVER1dup	yes	unknown	181505	59014	81296	0	37
P-0025880-T01-IM6	SOMATIC	DNMT1	CASZ1	19	1	10265403	10857423	Exon 20 of DNMT1(-)	Promoter of CASZ1(-):161Kb from tx start		GRCh37	TRANSLOCATION	10	6	Protein Fusion: mid-exon  {CASZ1:DNMT1}	PRECISE	3to5	DNMT1 (NM_001379) rearrangement: t(1;19)(p36.22;p13.2)(chr1:g.10857423::chr19:g.10265403)	yes	unknown	0	0	0	0	6
P-0068262-T01-IM7	SOMATIC	DNMT1	COL5A3	19	19	10092455	10265640	Intron of COL5A3(-):285bp after exon 32	Exon 19 of DNMT1(-)		GRCh37	DELETION	10	111	Protein Fusion: mid-exon  {DNMT1:COL5A3}	PRECISE	3to5	DNMT1 (NM_001379) - COL5A3 (NM_015719) rearrangement: c.1537:DNMT1_c.2460+286:COL5A3del	yes	unknown	173185	31151	33498	0	113
P-0059302-T01-IM7	SOMATIC	DNMT1	PLD3	19	19	10251491	40878152	Exon 31 of DNMT1(-)	Intron of PLD3(+):372bp after exon 9		GRCh37	INVERSION	10	68	Protein Fusion: mid-exon  {DNMT1:PLD3}	PRECISE	5to5	DNMT1 (NM_001379) - PLD3 (NM_012268) rearrangement: c.3441:DNMT1_c.879+372:PLD3inv	yes	unknown	30626661	503967	1320460	0	71
P-0016215-T01-IM6	SOMATIC	DNMT1	RAVER1	19	19	10247646	10444054	Intron of DNMT1(-):114bp after exon 36	Exon 1 of RAVER1(-)		GRCh37	DUPLICATION	0	9	Protein Fusion: mid-exon  {DNMT1:RAVER1}	IMPPRECISE	5to3	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.4441+115:DNMT1_c.181:RAVER1dup	yes	unknown	196408	40716	104790	0	9
P-0078965-T01-IM7	SOMATIC	DNMT1	ZNF878	19	19	10254607	12159351	Exon 28 of DNMT1(-)	Intron of ZNF878(-):2Kb before exon 2		GRCh37	DUPLICATION	8	5	Protein Fusion: mid-exon  {DNMT1:ZNF878}	PRECISE	5to3	DNMT1 (NM_001379) - ZNF878 (NM_001080404) rearrangement: c.2903:DNMT1_c.4-1776:ZNF878dup	yes	unknown	1904744	114894	99117	0	6
P-0006842-T01-IM5	SOMATIC	DNMT1	AP1M2	19	19	10270699	10700122	Exon 15 of DNMT1(-)	Promoter of AP1M2(-): 2Kb from tx start		GRCh37	DUPLICATION	16	19	Protein fusion: mid-exon (DNMT1-AP1M2)	PRECISE	5to3	DNMT1 (NM_001379) - AP1M2 (NM_005498) rearrangement :  c.1036:DNMT1_c.-2215:AP1M2dup	yes	unknown	429423	53777	50591	0	9
P-0044751-T01-IM6	SOMATIC	DNMT1	IL27RA	19	19	10270267	14156124	Intron of DNMT1(-):66bp after exon 16	Intron of IL27RA(+):841bp before exon 7		GRCh37	INVERSION	10	40	Protein Fusion: out of frame  {DNMT1:IL27RA}	PRECISE	5to5	DNMT1 (NM_001379) - IL27RA (NM_004843) rearrangement: c.1232+67:DNMT1_c.769-842:IL27RAinv	yes	unknown	3885857	156367	100954	0	48
P-0053068-T01-IM6	SOMATIC	DNMT1	ZGLP1	19	19	10277191	10420681	Intron of DNMT1(-):82bp after exon 10	Promoter of ZGLP1(-):5Kb from tx start		GRCh37	DUPLICATION	10	57	Transcript Fusion {DNMT1:ZGLP1}	PRECISE	5to3	DNMT1 (NM_001379) rearrangement: c.843+83:DNMT1_chr19:g.10420681dup	yes	unknown	143490	8910	27787	0	57
P-0042818-T01-IM6	SOMATIC	DNMT3A		2	2	25468100	25468813	Intron of DNMT3A(-):21bp after exon 13	Intron of DNMT3A(-):75bp after exon 12		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	DNMT3A (NM_022552) rearrangement: c.1474+76_c.1554+22inv			713	2310	2886	0	7
P-0019581-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25458694	25459805	Exon 22 of DNMT3A(-)	Exon 21 of DNMT3A(-)		GRCh37	DELETION	7	2	Deletion within transcript : mid-exon	PRECISE	3to5	DNMT3A (NM_022552) rearrangement: c2478_c.2479del	yes	unknown	1111	697	284	0	2
P-0025684-T01-IM6	SOMATIC	DNMT3A		2	2	25463542	25466735	Exon 18 of DNMT3A(-)	Intron of DNMT3A(-):31bp after exon 16		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	DNMT3A (NM_022552) rearrangement: c.2140_c.1936+32del			3193	2288	2959	0	2
P-0011405-T01-IM5	SOMATIC	DNMT3A	DNMT3A	2	2	25464487	25473789	Exon 17 of DNMT3A(-)	Intron of DNMT3A(-): 1Kb before exon 2		GRCh37	DELETION	98	79	Deletion within transcript: mid-exon	PRECISE	3to5	DNMT3A (NM_022552) rearrangement: c.640-2668_c.2026del	yes	unknown	9302	27299	18509	0	79
P-0052487-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25441549	25468946	IGR: 14Kb before DNMT3A(-)	Intron of DNMT3A(-):13bp before exon 12		GRCh37	DUPLICATION	10	4	DNMT3A-intragenic	PRECISE	5to3	DNMT3A (NM_022552) rearrangement: c.1430-13:DNMT3A_chr2:g.25441549dup	yes	unknown	27397	17919	31258	0	4
P-0042596-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	10625811	25469336	IGR: 36Kb before LOC101929715(+)	Intron of DNMT3A(-):152bp after exon 10		GRCh37	INVERSION	10	9	DNMT3A-intragenic	PRECISE	5to5	DNMT3A (NM_022552) rearrangement: c.1279+153:DNMT3A_chr2:g.10625811inv	yes	unknown	14843525	36608	41488	0	9
P-0015476-T01-IM6	SOMATIC	DNMT3A		2	2	24788000	25470517	IGR: 19Kb before NCOA1(+)	Exon 8 of DNMT3A(-)		GRCh37	DUPLICATION			DNMT3A-intragenic	PRECISE	5to3	DNMT3A (NM_022552) rearrangement: c.957_chr2:g.24788000dup			682517	35918	36191	0	69
P-0037497-T01-IM6	SOMATIC	DNMT3A	SNTG2	2	2	995257	25470849	Intron of SNTG2(+):49Kb after exon 1	Intron of DNMT3A(-):56bp after exon 7		GRCh37	INVERSION	0	26	Protein Fusion: in frame  {DNMT3A:SNTG2}	IMPPRECISE	5to5	DNMT3A (NM_022552) - SNTG2 (NM_018968) Rearrangement : c.855+57:DNMT3A_c.72+48503:SNTG2inv	yes	unknown	24475592	49837	65896	0	28
P-0055679-T01-IM6	SOMATIC	DNMT3A	DTNB	2	2	25458664	25784692	Exon 22 of DNMT3A(-)	Intron of DTNB(-):15Kb after exon 8		GRCh37	DUPLICATION	10	32	Protein Fusion: mid-exon  {DNMT3A:DTNB}	PRECISE	5to3	DNMT3A (NM_022552) - DTNB (NM_021907) rearrangement: c.2509:DNMT3A_c.876+15015:DTNBdup	yes	unknown	326028	44573	61762	0	32
P-0027676-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31368120	31373508	5-UTR of DNMT3B(+):9bp before coding start	Intron of DNMT3B(+):799bp before exon 5		GRCh37	INVERSION	8	4	Antisense Fusion	PRECISE	3to3	DNMT3B (NM_006892) rearrangement: c.-6-4_c.307-800inv	yes	unknown	5388	3924	8243	0	4
P-0036737-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	30803463	31389189	Intron of POFUT1(+):209bp after exon 3	Exon 19 of DNMT3B(+)		GRCh37	INVERSION	10	19	Antisense Fusion	PRECISE	3to3	DNMT3B (NM_006892): Rearrangement: c.2102:DNMT3B_chr20:g.30803463inv	yes	unknown	585726	57981	56514	0	18
P-0054150-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31385895	31388511	Intron of DNMT3B(+):370bp before exon 15	Intron of DNMT3B(+):129bp before exon 18		GRCh37	DELETION	10	25	Deletion of 3 exons : out of frame	PRECISE	3to5	DNMT3B (NM_006892) rearrangement: c.1491-371_c.1906-130del	yes	unknown	2616	7678	5191	0	25
P-0057103-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31358791	31384490	5-UTR of DNMT3B(+):9Kb before coding start	Intron of DNMT3B(+):105bp before exon 13		GRCh37	DELETION	10	5	Deletion within transcript	PRECISE	3to5	DNMT3B (NM_006892) rearrangement: c.1298-106:DNMT3B_chr20:g.31358791del	yes	unknown	25699	22249	9934	0	6
P-0019772-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31379471	31381477	Exon 8 of DNMT3B(+)	Intron of DNMT3B(+):76bp after exon 10		GRCh37	DELETION	10	14	Deletion within transcript : mid-exon	PRECISE	3to5	DNMT3B (NM_006892) rearrangement: c.878_c.1126+76del	yes	unknown	2006	3488	2885	0	14
P-0061481-T01-IM7	SOMATIC	DNMT3B	PLCB2	20	15	31388526	40602907	Intron of DNMT3B(+):114bp before exon 18	Promoter of PLCB2(-):23Kb from tx start		GRCh37	TRANSLOCATION	10	11	DNMT3B-intragenic	PRECISE	5to3	DNMT3B (NM_006892) rearrangement: t(15;20)(q15.1;q11.21)(chr15:g.40602907::chr20:g.31388526)	yes	unknown	0	0	0	0	11
P-0040096-T02-IM7	SOMATIC	DNMT3B	SPRED2	20	2	31390331	65685798	Intron of DNMT3B(+):55bp after exon 20	IGR: 148Kb before SPRED2(-)		GRCh37	TRANSLOCATION	10	26	DNMT3B-intragenic	PRECISE	3to5	DNMT3B (NM_006892) rearrangement: t(2;20)(p14;q11.21)(chr2:g.65685798::chr20:g.31390331)	yes	unknown	0	0	0	0	26
P-0078934-T01-IM7	SOMATIC	DNMT3B	ACTR3BP2	20	2	31372766	92320404	Intron of DNMT3B(+):101bp after exon 4	IGR: 191Kb before ACTR3BP2(+)		GRCh37	TRANSLOCATION	10	6	DNMT3B-intragenic	PRECISE	3to5	DNMT3B (NM_006892) rearrangement: t(2;20)(p11.1;q11.21)(chr2:g.92320404::chr20:g.31372766)	yes	unknown	0	0	0	0	7
P-0007808-T01-IM5	SOMATIC	DNMT3B		20	20	30634953	31374968	IGR: 5Kb before HCK(+)	Intron of DNMT3B(+): 68bp before exon 6		GRCh37	INVERSION			DNMT3B-intragenic	IMPRECISE	5to5	DNMT3B (NM_006892) Rearrangement : chr20:g.30634953_c.433-68:DNMT3Binv			740015	67656	59496	0	36
P-0013149-T01-IM5	SOMATIC	DNMT3B		20	7	31374410	18273376	Exon 5 of DNMT3B(+)	IGR: 207Kb before PRPS1L1(-)		GRCh37	TRANSLOCATION			DNMT3B-intragenic	PRECISE	3to3	DNMT3B (NM_006892) Rearrangement : t(7;20)(p21.1; q11.21)(chr7:g.18273376::chr20:g.31374410)			0	0	0	0	102
P-0016175-T01-IM6	SOMATIC	DNMT3B		20	6	31375366	165208692	Intron of DNMT3B(+):109bp after exon 6	IGR: 484Kb before C6orf118(-)		GRCh37	TRANSLOCATION			DNMT3B-intragenic	PRECISE	3to5	DNMT3B (NM_006892) rearrangement:  t(6;20)(q27;q11.21)(chr6:g.165208692::chr20:g.31375366)			0	0	0	0	18
P-0037541-T01-IM6	SOMATIC	DNMT3B		20	20	31379356	36490825	Intron of DNMT3B(+):50bp before exon 8	Intron of CTNNBL1(+):2Kb after exon 15		GRCh37	INVERSION			DNMT3B-intragenic	PRECISE	5to5	DNMT3B (NM_006892) rearrangement: c.814-51:DNMT3B_chr20:g.36490825inv			5111469	47241	62107	0	25
P-0039604-T01-IM6	SOMATIC	DNMT3B		20	16	31390225	11628924	Exon 20 of DNMT3B(+)	IGR: 13Kb before LITAF(-)		GRCh37	TRANSLOCATION			DNMT3B-intragenic	PRECISE	5to5	DNMT3B (NM_006892) rearrangement: t(16;20)(p13.13;q11.21)(chr16:g.11628924::chr20:g.31390225)			0	0	0	0	92
P-0063640-T01-IM7	SOMATIC	DNMT3B		20	3	31390138	99552159	Intron of DNMT3B(+):52bp before exon 20	Intron of CMSS1(+):15Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {CMSS1:DNMT3B}	PRECISE	5to3	DNMT3B (NM_006892) rearrangement: t(3;20)(q12.1;q11.21)(chr3:g.99552159::chr20:g.31390138)			0	0	0	0	10
P-0062115-T02-IM7	SOMATIC	DNMT3B	MROH8	20	20	31387189	35781281	Intron of DNMT3B(+):55bp after exon 16	Intron of MROH8(-):2Kb after exon 8		GRCh37	INVERSION	10	42	Protein Fusion: out of frame  {DNMT3B:MROH8}	PRECISE	3to3	DNMT3B (NM_006892) rearrangement: c.1759+55:DNMT3B_chr20:g.35781281inv	yes	unknown	4394092	34895	74855	0	44
P-0064588-T01-IM7	SOMATIC	DOCK4	BRAF	7	7	111386092	140483872	Intron of DOCK4(-):297bp after exon 43	Intron of BRAF(-):915bp before exon 10		GRCh37	DUPLICATION	10	6	Protein Fusion: out of frame  {DOCK4:BRAF}	PRECISE	5to3	DOCK4 (NM_014705) - BRAF (NM_004333) fusion: c.4650+298:DOCK4_c.1178-915:BRAFdup	yes	unknown	29097780	210145	78960	0	7
P-0006840-T01-IM5	SOMATIC	DOCK7	JAK1	1	1	62930879	65339036	Intron of DOCK7(-): 8Kb before exon 48	Intron of JAK1(-): 17bp after exon 5		GRCh37	DELETION	79	102	Protein fusion: out of frame (JAK1-DOCK7)	PRECISE	3to5	DOCK7 (NM_033407) - JAK1 (NM_002227) rearrangement : c.6120-7503:DOCK7_c.483+17:JAK1del	yes	unknown	2408157	50317	30007	0	109
P-0018271-T01-IM6	SOMATIC	DOT1L	HAUS8	19	19	2222617	17159184	Intron of DOT1L(+):59bp after exon 24	Promoter of HAUS8(-):1Kb from tx start		GRCh37	DELETION	10	24	Antisense Fusion	PRECISE	3to5	DOT1L (NM_032482) rearrangement: c.3390+59_g.17159184del	yes	unknown	14936567	448758	737517	0	109
P-0046875-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226380	2227558	Exon 27 of DOT1L(+)	Intron of DOT1L(+):432bp after exon 27		GRCh37	INVERSION	0	3	Antisense Fusion	IMPPRECISE	3to3	DOT1L (NM_032482) rearrangement: c.3860_c.4606+432inv	yes	unknown	1178	7024	10875	0	3
P-0055276-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226524	2227527	Exon 27 of DOT1L(+)	Intron of DOT1L(+):401bp after exon 27		GRCh37	INVERSION	0	7	Antisense Fusion	IMPPRECISE	3to3	DOT1L (NM_032482) rearrangement: c.4004_c.4606+401del	yes	unknown	1003	5983	7414	0	7
P-0086117-T01-IM7	SOMATIC	DOT1L		19	19	2201316	2211975	Intron of DOT1L(+):1Kb after exon 8	Intron of DOT1L(+):134bp after exon 16		GRCh37	INVERSION			Antisense Fusion	IMPPRECISE	3to3	DOT1L (NM_032482) rearrangement: c.707+1378_c.1557+134inv			10659	11339	22734	0	6
P-0002873-T01-IM3	SOMATIC	DOT1L	DOT1L	19	19	2205552	2225422	Intron of DOT1L(+): 1Kb before exon 10	Exon 26 of DOT1L(+)		GRCh37	DELETION	13	6	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	19870	34119	27368	0	6
P-0003234-T01-IM5	SOMATIC	DOT1L	DOT1L	19	19	2213611	2215828	Exon 17 of DOT1L(+)	Intron of DOT1L(+): 452bp before exon 20		GRCh37	DELETION	32	8	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	2217	3202	3589	0	10
P-0021831-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226544	2228123	Exon 27 of DOT1L(+)	Intron of DOT1L(+):997bp after exon 27		GRCh37	INVERSION	0	6	DOT1L-intragenic	IMPPRECISE	5to5	DOT1L (NM_032482) rearrangement: c.4024_c.4606+997inv	yes	unknown	1579	7329	8526	0	6
P-0020394-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226544	2228123	Exon 27 of DOT1L(+)	Intron of DOT1L(+):997bp after exon 27		GRCh37	INVERSION	0	7	DOT1L-intragenic	IMPPRECISE	5to5	DOT1L (NM_032482) rearrangement: c.4024_c.4606+997inv	yes	unknown	1579	9561	14002	0	7
P-0027128-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226500	2228059	Exon 27 of DOT1L(+)	Intron of DOT1L(+):933bp after exon 27		GRCh37	INVERSION	8	2	DOT1L-intragenic	PRECISE	5to5	DOT1L (NM_032482) rearrangement: c.3980_c.4606+933inv	yes	unknown	1559	6541	12067	0	2
P-0047340-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2106386	2221796	Intron of AP3D1(-):2Kb after exon 29	Intron of DOT1L(+):178bp before exon 24		GRCh37	DELETION	9	12	DOT1L-intragenic	PRECISE	3to5	DOT1L (NM_032482) rearrangement: c.2807-179:DOT1L_chr19:g.2106386del	yes	unknown	115410	48704	49408	0	12
P-0040447-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2067589	2228346	IGR: 3Kb before MOB3A(-)	Intron of DOT1L(+):1Kb after exon 27		GRCh37	DELETION	10	27	DOT1L-intragenic	PRECISE	3to5	DOT1L (NM_032482) rearrangement: c.4606+1220:DOT1L_chr19:g.2067589del	yes	unknown	160757	68072	73193	0	29
P-0062584-T01-IM7	SOMATIC	DOT1L	GADD45B	19	19	2211002	2489939	Intron of DOT1L(+):95bp before exon 15	IGR: 14Kb before GADD45B(+)		GRCh37	INVERSION	10	11	DOT1L-intragenic	PRECISE	3to3	DOT1L (NM_032482) rearrangement: c.1352-96:DOT1L_chr19:g.2489939inv	yes	unknown	278937	68907	50836	0	10
P-0026022-T01-IM6	SOMATIC	DOT1L	TMPRSS9	19	19	2222042	2362078	Exon 24 of DOT1L(+)	IGR: 28Kb before TMPRSS9(+)		GRCh37	DUPLICATION	10	27	DOT1L-intragenic	PRECISE	5to3	DOT1L (NM_032482) rearrangement: c.2874_chr19:g.2362078dup	yes	unknown	140036	19374	30271	0	28
P-0069952-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2190870	2193949	Intron of DOT1L(+):140bp before exon 5	Intron of DOT1L(+):167bp after exon 6		GRCh37	INVERSION	10	26	DOT1L-intragenic	PRECISE	5to5	DOT1L (NM_032482) rearrangement: c.265-141_c.588+167inv	yes	unknown	3079	3641	7743	0	26
P-0072530-T01-IM7	SOMATIC	DOT1L	MFSD2A	19	1	2226730	40439905	Exon 27 of DOT1L(+)	IGR: 19Kb before MFSD2A(+)		GRCh37	TRANSLOCATION	10	98	DOT1L-intragenic	PRECISE	3to3	DOT1L (NM_032482) rearrangement: t(1;19)(p34.2;p13.3)(chr1:g.40439905::chr19:g.2226730)	yes	unknown	0	0	0	0	96
P-0073462-T02-IM7	SOMATIC	DOT1L	DOT1L	19	19	2130167	2202759	Intron of AP3D1(-):239bp after exon 6	Exon 9 of DOT1L(+)		GRCh37	DELETION	10	62	DOT1L-intragenic	PRECISE	3to5	DOT1L (NM_032482) rearrangement: c.768:DOT1L_chr19:g.2130167del	yes	unknown	72592	10625	15544	0	64
P-0007771-T01-IM5	SOMATIC	DOT1L		19	17	2228256	36167655	Intron of DOT1L(+): 1Kb after exon 27	IGR: 35Kb before LOC284100(-)		GRCh37	TRANSLOCATION			DOT1L-intragenic	PRECISE	5to5	DOT1L (NM_032482) rearrangement: t(17;19)(q12;p12)(chr17:g.36167655::chr19:g.2228256 )			0	0	0	0	13
P-0018982-T01-IM6	SOMATIC	DOT1L		19	19	2127761	2226177	Intron of AP3D1(-):561bp before exon 9	Intron of DOT1L(+):4bp before exon 27		GRCh37	DELETION			DOT1L-intragenic	PRECISE	3to5	DOT1L (NM_032482) rearrangement: chr19:g.2127761_c.3662-5del			98416	57482	31856	0	96
P-0019410-T01-IM6	SOMATIC	DOT1L		19	19	2214125	42147951	Intron of DOT1L(+):140bp after exon 18	IGR: 23Kb before CEACAM4(-)		GRCh37	DELETION			DOT1L-intragenic	PRECISE	3to5	DOT1L (NM_032482 rearrangement:  c.1797+140:DOT1L_chr19:g.42147951del			39933826	975241	930788	0	4
P-0021709-T01-IM6	SOMATIC	DOT1L		19	8	2226441	8188507	Exon 27 of DOT1L(+)	Intron of SGK223(-):3Kb before exon 4		GRCh37	TRANSLOCATION			DOT1L-intragenic	PRECISE	5to3	DOT1L (NM_032482) rearrangement: t(8,19)(p23.1,p13.3)(chr8:g.8188507::chr19:g.2226441)			0	0	0	0	127
P-0024886-T01-IM6	SOMATIC	DOT1L		19	19	261784	2213527	IGR: 19Kb before PPAP2C(-)	Intron of DOT1L(+):10bp before exon 17		GRCh37	INVERSION			DOT1L-intragenic	PRECISE	5to5	DOT1L (NM_032482) rearrangement: chr19:g.261784_c.1558-11inv			1951743	54736	59125	0	13
P-0086862-T01-IM7	SOMATIC	DOT1L		19	19	2211581	2216751	Intron of DOT1L(+):168bp before exon 16	Exon 20 of DOT1L(+)		GRCh37	INVERSION			DOT1L-intragenic	PRECISE	5to5	DOT1L (NM_032482) rearrangement: c.1466-169_c.2395inv			5170	7508	7620	0	26
P-0032851-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2210437	2223140	Exon 13 of DOT1L(+)	Intron of DOT1L(+):139bp before exon 25		GRCh37	DUPLICATION	0	35	Duplication within transcript : mid-exon	IMPPRECISE	5to3	DOT1L (NM_032482) Rearrangement : c.1044_c.3391-140dup	yes	unknown	12703	25283	35979	0	36
P-0039421-T01-IM6	SOMATIC	DOT1L	ZNF77	19	19	2228308	2938248	Intron of DOT1L(+):1Kb after exon 27	Intron of ZNF77(-):1Kb after exon 2		GRCh37	INVERSION	10	34	Protein Fusion: in frame  {DOT1L:ZNF77}	PRECISE	3to3	DOT1L (NM_032482) - ZNF77 (NM_021217) rearrangement: c.4606+1182:DOT1L_c.130+1031:ZNF77inv	yes	unknown	709940	3408	4631	0	34
P-0024900-T01-IM6	SOMATIC	DOT1L	CELF5	19	19	2213887	3269794	Exon 18 of DOT1L(+)	Intron of CELF5(+):4Kb before exon 3		GRCh37	DELETION	10	69	Protein Fusion: mid-exon  {DOT1L:CELF5}	PRECISE	3to5	DOT1L (NM_032482) - CELF5 (NM_021938) Rearrangement : c.1699:DOT1L_c.343-4076:CELF5del	yes	unknown	1055907	54070	90089	0	71
P-0009432-T01-IM5	SOMATIC	DOT1L	ODZ4	19	11	2208867	79148762	Intron of DOT1L(+): 67bp before exon 12	5-UTR of ODZ4(-): 368Kb before coding start		GRCh37	TRANSLOCATION	63	29	Transcript fusion (ODZ4-DOT1L)	PRECISE	5to5	TENM4 (NM_001098816) - DOT1L (NM_032482) rearrangement : t(11;19)(q14.1;p13.3)(chr11:g.79148762::chr19:g.2208867)	yes	unknown	0	0	0	0	29
P-0084777-T01-IM7	SOMATIC	DOT1L		19	19	1525841	2223276	5-UTR of PLK5(+):1Kb before coding start	Intron of DOT1L(+):3bp before exon 25		GRCh37	DELETION			Transcript Fusion {PLK5:DOT1L}	PRECISE	3to5	DOT1L (NM_032482) rearrangement: c.3391-4:DOT1L_chr19:g.1525841del			697435	76361	49884	0	21
P-0056701-T01-IM6	SOMATIC	DPP6	SMO	7	7	128852146	154572557	Exon 12 of SMO(+)	Intron of DPP6(+):8Kb after exon 10		GRCh37	DUPLICATION	10	11	Protein Fusion: mid-exon  {DPP6:SMO}	PRECISE	5to3	DPP6 (NM_130797) - SMO (NM_005631) rearrangement: c.509+7905:DPP6_c.2218:SMOdup	yes	unknown	25720411	284712	97685	0	11
P-0023764-T01-IM6	SOMATIC	DRD4	ATM	11	11	638545	108235890	Intron of DRD4(+):887bp before exon 2	Exon 62 of ATM(+)		GRCh37	INVERSION	5	2	Antisense Fusion	PRECISE	3to3	ATM (NM_000051) rearrangement: chr11:g.638545_c.8932inv	yes	unknown	107597345	532371	494109	0	2
P-0057588-T02-IM6	SOMATIC	DROSHA	DROSHA	5	5	31401596	31404334	Exon 35 of DROSHA(-)	Intron of DROSHA(-):1Kb after exon 34		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	DROSHA (NM_013235) rearrangement: c.3994+1450_c.4068del	yes	unknown	2738	780	443	0	11
P-0073875-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	31401951	31407008	Intron of DROSHA(-):282bp before exon 35	Exon 33 of DROSHA(-)		GRCh37	DELETION	4	4	Deletion within transcript : mid-exon	PRECISE	3to5	DROSHA (NM_013235) rearrangement: c.3899_c.3995-282del	yes	unknown	5057	980	2125	0	4
P-0054303-T01-IM6	SOMATIC	DROSHA	FANCL	5	2	31504903	58439504	Intron of DROSHA(-):161bp before exon 10	Intron of FANCL(-):8Kb before exon 6		GRCh37	TRANSLOCATION	10	9	DROSHA-intragenic	PRECISE	3to3	DROSHA (NM_013235) rearrangement: t(2;5)(p16.1;p13.3)(chr2:g.58439504::chr5:g.31504903)	yes	unknown	0	0	0	0	10
P-0079746-T01-IM7	SOMATIC	DROSHA	DROSHA	8	5	12523023	31493298	3-UTR of LOC729732(-):97bp after coding stop	Intron of DROSHA(-):15bp after exon 12		GRCh37	TRANSLOCATION	10	31	DROSHA-intragenic	PRECISE	5to5	DROSHA (NM_013235) rearrangement: t(5;8)(p13.3;p23.1)(chr5:g.31493298::chr8:g.12523023)	yes	unknown	0	0	0	0	37
P-0021873-T01-IM6	SOMATIC	DROSHA		12	5	119252705	31483658	IGR: 167Kb before SRRM4(+)	Intron of DROSHA(-):2bp after exon 15		GRCh37	TRANSLOCATION			DROSHA-intragenic	PRECISE	3to5	DROSHA (NM_013235) rearrangement: t(5;12)(p13.3;q24.23)(chr5:g.31483658::chr12:g.119252705)			0	0	0	0	96
P-0032076-T01-IM6	SOMATIC	DROSHA		5	5	29759534	31431595	IGR: 379Kb before LOC101929681(-)	Intron of DROSHA(-):87bp after exon 25		GRCh37	INVERSION			DROSHA-intragenic	PRECISE	5to5	DROSHA (NM_013235) Rearrangement: c.3145+88:DROSHA_chr5:g.29759534inv			1672061	13499	19432	0	11
P-0035219-T01-IM6	SOMATIC	DROSHA		5	5	31405726	32816052	Intron of DROSHA(-):57bp after exon 34	IGR: 105Kb before NPR3(+)		GRCh37	INVERSION			DROSHA-intragenic	PRECISE	5to5	DROSHA (NM_013235) rearrangement: c.3994+58:DROSHA_chr5:g.32816052inv			1410326	37633	53695	0	8
P-0037120-T01-IM6	SOMATIC	DROSHA		8	5	97865366	31485128	Intron of CPQ(+):18Kb after exon 3	Intron of DROSHA(-):59bp before exon 14		GRCh37	TRANSLOCATION			DROSHA-intragenic	PRECISE	5to3	DROSHA (NM_013235) rearrangement: t(5;8)(p13.3;q22.1)(chr5:g.31485128::chr8:g.97865366)			0	0	0	0	45
P-0068097-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	31472187	31480738	Exon 16 of DROSHA(-)	Intron of DROSHA(-):3Kb after exon 15		GRCh37	DUPLICATION	10	18	Duplication within transcript : mid-exon	PRECISE	5to3	DROSHA (NM_013235) rearrangement: c.2071+2923_c.2224dup	yes	unknown	8551	1066	1382	0	19
P-0064103-T01-IM7	SOMATIC	DROSHA	NELL1	11	5	20796156	31484832	Intron of NELL1(+):9Kb before exon 3	Intron of DROSHA(-):155bp after exon 14		GRCh37	TRANSLOCATION	9	6	Protein Fusion: in frame  {DROSHA:NELL1}	PRECISE	5to5	DROSHA (NM_013235) - NELL1 (NM_006157) rearrangement: t(5;11)(p13.3;p15.1)(chr5:g.31484832::chr11:g.20796156)	yes	unknown	0	0	0	0	6
P-0005459-T01-IM5	SOMATIC	DSCAM	TMPRSS2	21	21	41501891	42867909	Intron of DSCAM(-): 4Kb after exon 19	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	80	68	Protein fusion: out of frame (TMPRSS2-DSCAM)	PRECISE	3to5	TMPRSS2 (NM_001135099) - DSCAM (NM_001389) Rearrangement : c.127-1404:TMPRSS2 _c.3562+3890:DSCAMdel	yes	unknown	1366018	34974	42806	0	68
P-0051249-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	14166875	29203283	Intron of SGCZ(-):15Kb after exon 3	Intron of DUSP4(-):4Kb after exon 1		GRCh37	INVERSION	10	60	Antisense Fusion	PRECISE	5to5	DUSP4 (NM_001394) rearrangement: c.433+4080:DUSP4_chr8:g.14166875inv	yes	unknown	15036408	34202	34799	0	83
P-0047823-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	28791503	29197597	5-UTR of HMBOX1(+):30Kb before coding start	Intron of DUSP4(-):17bp after exon 2		GRCh37	INVERSION	10	97	Transcript Fusion {DUSP4:HMBOX1}	PRECISE	5to5	DUSP4 (NM_001394) rearrangement: c.579+18:DUSP4_chr8:g.28791503inv	yes	unknown	406094	9998	8286	0	117
P-0004634-T01-IM5	SOMATIC	E2F3	E2F3	6	6	20401811	20402639	Promoter of E2F3(+): 326bp from tx start	Exon 1 of E2F3(+)		GRCh37	DELETION	0	9	Deletion within transcript: mid-exon	IMPRECISE	3to5	E2F3 (NM_001949) rearrangement: c.-653_c.176del	yes	unknown	828	1455	1501	0	9
P-0053629-T02-IM6	SOMATIC	E2F3	FGD2	6	6	20404233	36990033	Intron of E2F3(+):1Kb after exon 1	Exon 13 of FGD2(+)		GRCh37	DELETION	10	19	Protein Fusion: mid-exon  {E2F3:FGD2}	PRECISE	3to5	E2F3 (NM_001949) - FGD2 (NM_173558) rearrangement: c.393+1377:E2F3_c.1345:FGD2del	yes	unknown	16585800	385716	711264	0	19
P-0053937-T01-IM6	SOMATIC	E2F3	ICK	6	6	20402603	52902004	Exon 1 of E2F3(+)	Intron of ICK(-):732bp after exon 4		GRCh37	INVERSION	10	110	Protein Fusion: mid-exon  {E2F3:ICK}	PRECISE	3to3	E2F3 (NM_001949) - ICK (NM_014920) rearrangement: c.140:E2F3_c.156+733:ICKinv	yes	unknown	32499401	452299	684269	0	108
P-0024105-T01-IM6	SOMATIC	E2F3	CDKAL1	6	6	20481435	21024970	Intron of E2F3(+):1bp before exon 3	Intron of CDKAL1(+):24Kb after exon 11		GRCh37	DUPLICATION	0	14	Protein Fusion: out of frame  {CDKAL1:E2F3}	IMPPRECISE	5to3	CDKAL1 (NM_017774) - E2F3 (NM_001949) rearrangement: c.1055+24367:CDKAL1_c.506-2:E2F3dup	yes	unknown	543535	8908	10624	0	14
P-0030527-T01-IM6	SOMATIC	EDF1	TRAF2	9	9	139757686	139815499	Intron of EDF1(-):107bp after exon 3	Exon 9 of TRAF2(+)		GRCh37	DELETION	10	8	TRAF2-EDF1 fusion	PRECISE	3to5	EDF1 (NM_003792) - TRAF2 (NM_021138) rearrangement: c.291+54:EDF1_c.970:TRAF2del	yes	unknown	57813	14569	17355	0	8
P-0018389-T02-IM6	SOMATIC	EEA1	EGFR								GRCh37				EEA1-EGFR Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EEA1-EGFR fusion. Note: The rearrangement is an in-frame fusion between genes EEA1 Exon12 (NM_003566) and EGFR Exon18 (NM_005228).	yes	unknown					
P-0044912-T01-IM6	SOMATIC	EED	EED	11	11	85914785	85979611	IGR: 41Kb before EED(+)	Intron of EED(+):8bp after exon 9		GRCh37	INVERSION	5	4	EED-intragenic	PRECISE	3to3	EED (NM_003797) rearrangement: c.966+8:EED_chr11:g.85914785inv	yes	unknown	64826	5493	8827	0	4
P-0037450-T01-IM6	SOMATIC	EED	FTO	16	11	53843744	85967478	Intron of FTO(+):307bp before exon 2	Exon 5 of EED(+)		GRCh37	TRANSLOCATION	0	5	Protein Fusion: mid-exon  {EED:FTO}	IMPPRECISE	5to3	EED (NM_003797) - FTO (NM_001080432) rearrangement: t(11,16)(q14.2;q12.2)(chr11:g.85967478::chr16:g.53843744)	yes	unknown	0	0	0	0	5
P-0018926-T01-IM6	SOMATIC	EFCAB5	RNF43	17	17	28373090	56440963	Intron of EFCAB5(+):5Kb before exon 9	Intron of RNF43(-):2bp before exon 4		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {EFCAB5:RNF43}	PRECISE	3to3	EFCAB5 (NM_198529) - RNF43 (NM_017763) rearrangement: c.1201-5046:EFCAB5_c.376-2:RNF43inv	yes	unknown	28067873	606547	1428768	0	20
P-0056867-T01-IM6	SOMATIC	EFCAB6	FANCA	22	16	44100147	89877547	Intron of EFCAB6(-):7Kb after exon 10	Intron of FANCA(-):68bp before exon 4		GRCh37	TRANSLOCATION	0	5	Protein Fusion: out of frame  {EFCAB6:FANCA}	IMPPRECISE	5to3	EFCAB6 (NM_022785) - FANCA (NM_000135) rearrangement: t(16;22)(q24.3;q13.2)(chr16:g.89877547::chr22:g.44100147)	yes	unknown	0	0	0	0	5
P-0011537-T01-IM5	SOMATIC	EGFL7	FHIT	9	3	139564655	59696693	Exon 7 of EGFL7(+)	IGR: 38Kb before FHIT(-)		GRCh37	TRANSLOCATION	34	29	EGFL7-intragenic	PRECISE	3to5	EGFL7 (NM_201446) rearrangement: t(3;9)(p14.2;q34.3)(chr3:g.59696693::chr9:g.139564655)	yes	unknown	0	0	0	0	29
P-0021271-T01-IM6	SOMATIC	EGFL7		9	9	139473248	139562957	IGR: 31Kb before LINC01573(+)	Intron of EGFL7(+):51bp before exon 3		GRCh37	DELETION			EGFL7-intragenic	PRECISE	3to5	EGFL7 (NM_201446) rearrangement: g.139473248_c.81-52del			89709	2838	1400	0	36
P-0023961-T01-IM6	SOMATIC	EGFL7	TNS1	9	2	139566440	218708823	Exon 8 of EGFL7(+)	Intron of TNS1(-):3Kb after exon 17		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {EGFL7:TNS1}	PRECISE	3to3	EGFL7 (NM_201446) - TNS1 (NM_022648) rearrangement: t(2;9)(q35;q34.3)(chr2:g.218708823::chr9:g.139566440)			0	0	0	0	82
P-0078734-T01-IM7	SOMATIC	EGFL7	EGFL7	9	9	128466562	139564321	5-UTR of MAPKAP1(-):265Kb before coding start	Intron of EGFL7(+):44bp before exon 5		GRCh37	INVERSION	6	6	Transcript Fusion {MAPKAP1:EGFL7}	PRECISE	5to5	EGFL7 (NM_201446) rearrangement: c.314-45:EGFL7_chr9:g.128466562inv	yes	unknown	11097759	174677	236797	0	6
P-0045881-T01-IM6	SOMATIC	EGFL7	TMEM141	9	9	139562857	139685238	Intron of EGFL7(+):43bp after exon 2	Promoter of TMEM141(+):538bp from tx start		GRCh37	DUPLICATION	10	21	Transcript Fusion {TMEM141:EGFL7}	PRECISE	5to3	EGFL7 (NM_201446) rearrangement: c.80+43:EGFL7_chr9:g.139685238dup	yes	unknown	122381	14990	22614	0	22
P-0063437-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55270113	55271518	Intron of EGFR(+):96bp before exon 27	Intron of EGFR(+):1Kb after exon 27		GRCh37	DELETION	0	10	Deletion of 1 exon : out of frame	IMPPRECISE	3to5	EGFR (NM_005228) rearrangement: c.3163-97_c.3271+1200del	yes	unknown	1405	2693	35787	0	336
P-0005240-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55216890	55221971	Intron of EGFR(+): 2Kb before exon 5	Intron of EGFR(+): 126bp after exon 7		GRCh37	DELETION	46	36	Deletion of 3 exons: in frame	PRECISE	3to5	EGFR (NM_005228) Rearrangement :  c.560-2097_889+126del	yes	unknown	5081	7067	26850	0	35
P-0041640-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55168886	55222497	Intron of EGFR(+):41Kb before exon 2	Intron of EGFR(+):652bp after exon 7		GRCh37	DELETION	10	11	Deletion of 6 exons : in frame	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.89-41093_c.889+652del	yes	unknown	53611	14181	20439	0	12
P-0029645-T01-IM6	SOMATIC	EGFR		7	7	55193726	55221911	Intron of EGFR(+):16Kb before exon 2	Intron of EGFR(+):66bp after exon 7		GRCh37	DELETION			Deletion of 6 exons : in frame	PRECISE	3to5	EGFR (NM_005228) vIII intragenic deletion: c.89-16253_c.889+66del			28185	10523	12894	0	5
P-0039794-T01-IM6	SOMATIC	EGFR		7	7	55108237	55223147	Intron of EGFR(+):21Kb after exon 1	Intron of EGFR(+):375bp before exon 8		GRCh37	DELETION			Deletion of 6 exons : in frame	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.88+21179_c.890-376del			114910	14484	17152	0	20
P-0073575-T01-IM7	SOMATIC	EGFR		7	7	55152287	55222598	Intron of EGFR(+):58Kb before exon 2	Intron of EGFR(+):753bp after exon 7		GRCh37	DELETION			Deletion of 6 exons : in frame	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.89-57692_c.889+753del			70311	20631	22454	0	41
P-0073984-T01-IM7	SOMATIC	EGFR		7	7	55098398	55222076	Intron of EGFR(+):11Kb after exon 1	Intron of EGFR(+):231bp after exon 7		GRCh37	DELETION			Deletion of 6 exons : in frame	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.88+11340_c.889+231del			123678	18133	34461	0	47
P-0001445-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55179677	55223121	Intron of EGFR(+): 30Kb before exon 2	Intron of EGFR(+): 402bp before exon 8		GRCh37	DELETION	8	4	Deletion of 6 exons: in frame	PRECISE	3to5	None	yes	unknown	43444	11171	17655	0	4
P-0011247-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55222771	55230555	Intron of EGFR(+): 752bp before exon 8	Intron of EGFR(+): 871bp before exon 14		GRCh37	DELETION	20	30	Deletion of 6 exons: out of frame	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.890-752_c.1632-871del	yes	unknown	7784	21708	14956	0	20
P-0040248-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55233129	55238867	Exon 15 of EGFR(+)	Exon 16 of EGFR(+)		GRCh37	DELETION	10	2	Deletion within transcript : mid-exon	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.1879_c.1881-1del	yes	unknown	5738	4403	2014	0	2
P-0063711-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55267218	55269000	Intron of EGFR(+):662bp after exon 23	Exon 25 of EGFR(+)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.2848+662_c.3066del	yes	unknown	1782	5940	6029	0	15
P-0022427-T01-IM6	SOMATIC	EGFR		7	7	55241236	55269004	Intron of EGFR(+):377bp before exon 18	Exon 25 of EGFR(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	EGFR (NM_005228) rearrangement: c.2062-378_c.3070del			27768	29076	31369	0	39
P-0057601-T01-IM6	SOMATIC	EGFR		7	7	55231515	55232972	Exon 14 of EGFR(+)	Exon 15 of EGFR(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.1721_c.1723-1del			1457	970	1973	0	4
P-0010934-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55210059	55221966	Exon 2 of EGFR(+)	Intron of EGFR(+): 121bp after exon 7		GRCh37	DELETION	12	12	Deletion within transcript: mid-exon	PRECISE	3to5	EFGR VIII Intragenic deletion:  c.169_889+121del	yes	unknown	11907	11915	13337	0	12
P-0040116-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55224137	55232815	Intron of EGFR(+):88bp before exon 9	Intron of EGFR(+):157bp before exon 15		GRCh37	DUPLICATION	5	3	Duplication of 6 exons : out of frame	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.1007-89_c.1723-158dup	yes	unknown	8678	6289	8951	0	3
P-0075895-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55241157	55269226	Intron of EGFR(+):340bp after exon 17	Intron of EGFR(+):178bp after exon 25		GRCh37	DUPLICATION	10	118	Duplication of 8 exons : in frame	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.2061+340_c.3114+178dup	yes	unknown	28069	21583	43913	0	120
P-0039604-T01-IM6	SOMATIC	EGFR		7	7	55241220	55269410	Intron of EGFR(+):393bp before exon 18	Intron of EGFR(+):17bp before exon 26		GRCh37	DUPLICATION			Duplication of 8 exons : in frame	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.2062-394_c.3115-18dup			28190	24242	67860	0	527
P-0006268-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55240917	55269188	Intron of EGFR(+): 100bp after exon 17	Intron of EGFR(+): 140bp after exon 25		GRCh37	DUPLICATION	12	5	Duplication of 8 exons: in frame	PRECISE	5to3	EGFR (NM_005228) Rearrangement : c.2061+100_3114+140dup	yes	unknown	28271	12482	23514	0	5
P-0004961-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55241471	55269311	Intron of EGFR(+): 143bp before exon 18	Intron of EGFR(+): 117bp before exon 26		GRCh37	DUPLICATION	3	4	Duplication of 8 exons: in frame	PRECISE	5to3	EGFR (NM_005228) rearrangement : c.2062-143_3115-117dup	yes	unknown	27840	17298	16343	0	2
P-0009307-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55240896	55269403	Intron of EGFR(+): 79bp after exon 17	Intron of EGFR(+): 25bp before exon 26		GRCh37	DUPLICATION	13	6	Duplication of 8 exons: in frame	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.2061+79_c.3115-25dup	yes	unknown	28507	17514	22167	0	6
P-0047827-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55241121	55270027	Intron of EGFR(+):304bp after exon 17	Intron of EGFR(+):182bp before exon 27		GRCh37	DUPLICATION	10	87	Duplication of 9 exons : in frame	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.2061+304_c.3163-183dup	yes	unknown	28906	28150	51925	0	91
P-0036960-T01-IM6	SOMATIC	EGFR		7	7	55209999	55221934	Exon 2 of EGFR(+)	Intron of EGFR(+):89bp after exon 7		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	EGFR (NM_005228) rearrangement: c.109_c.889+89dup			11935	8179	12431	0	4
P-0006768-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55172826	55223023	Intron of EGFR(+): 37Kb before exon 2	Intron of EGFR(+): 500bp before exon 8		GRCh37	INVERSION	25	23	EGFR-intragenic	PRECISE	5to5	EGFR (NM_00522) rearrangement : c.89-37153:EGFR_c.890-500inv	yes	unknown	50197	32086	330598	0	17
P-0030309-T01-IM6	SOMATIC	EGFR	EGFR	7	7	52700313	55269664	IGR: 403Kb before POM121L12(+)	Intron of EGFR(+):189bp after exon 26		GRCh37	INVERSION	10	5	EGFR-intragenic	PRECISE	3to3	EGFR (NM_005228) rearrangement: chr7:g.52700313_c.3162+189:EGFR_inv	yes	unknown	2569351	67140	92319	0	5
P-0042874-T01-IM6	SOMATIC	EGFR	EGFR	17	7	19540903	55241239	IGR: 11Kb before ALDH3A2(+)	Intron of EGFR(+):374bp before exon 18		GRCh37	TRANSLOCATION	8	6	EGFR-intragenic	PRECISE	3to5	EGFR (NM_005228) rearrangement: t(7;17)(p11.2;p11.2)(chr7:g.55241239::chr17:g.19540903)	yes	unknown	0	0	0	0	6
P-0069967-T01-IM7	SOMATIC	EGFR	LINC01005	7	7	55086979	63374837	Exon 1 of EGFR(+)	IGR: 110Kb before LINC01005(-)		GRCh37	INVERSION	10	19	EGFR-intragenic	PRECISE	5to5	EGFR (NM_005228) rearrangement: c.9:EGFR_chr7:g.63374837inv	yes	unknown	8287858	84269	169661	0	23
P-0072617-T02-IM7	SOMATIC	EGFR	COL1A2	7	7	55272832	93873242	Intron of EGFR(+):116bp before exon 28	IGR: 151Kb before COL1A2(+)		GRCh37	INVERSION	10	44	EGFR-intragenic	PRECISE	5to5	EGFR (NM_005228) rearrangement: c.3272-117:EGFR_chr7:g.93873242inv	yes	unknown	38600410	254086	377125	0	49
P-0016223-T01-IM6	SOMATIC	EGFR		19	7	6053108	55223210	5-UTR of RFX2(-):58Kb before coding start	Intron of EGFR(+):312bp before exon 8		GRCh37	TRANSLOCATION			EGFR-intragenic	PRECISE	3to5	EGFR (NM_005228) rearrangement: t(7;19)(p11.2;p13.3)(chr7:g.55223210::chr19:g.6053108)			0	0	0	0	40
P-0017827-T01-IM6	SOMATIC	EGFR		7	7	55268962	55336682	Exon 25 of EGFR(+)	IGR: 31Kb before ELDR(-)		GRCh37	INVERSION			EGFR-intragenic	PRECISE	3to3	EGFR (NM_005228) rearrangement: c.3028:EGFR_chr7:g.55336682del			67720	14586	456468	0	106
P-0023586-T01-IM6	SOMATIC	EGFR		7	7	38654621	55269976	Intron of AMPH(-):16Kb after exon 1	Intron of EGFR(+):233bp before exon 27		GRCh37	DELETION			EGFR-intragenic	PRECISE	3to5	EGFR (NM_005228) Rearrangement : c.69+16262:AMPH_c.3163-234:EGFRdel			16615355	116751	153736	0	8
P-0034700-T01-IM6	SOMATIC	EGFR		7	4	55210965	31644949	Intron of EGFR(+):32bp before exon 3	IGR: 354Kb before LOC102723828(+)		GRCh37	TRANSLOCATION			EGFR-intragenic	PRECISE	5to5	EGFR (NM_005228) rearrangement: t(4;7)(p15.1;p11.2)(chr4:g.31644949::chr7:g.55210965)			0	0	0	0	13
P-0035926-T01-IM6	SOMATIC	EGFR		7	7	55268790	56436684	Intron of EGFR(+):90bp before exon 25	IGR: 55Kb before LOC650226(-)		GRCh37	INVERSION			EGFR-intragenic	PRECISE	3to3	EGFR (NM_005228) rearrangement: c.2947-91_chr7:g.56436684inv			1167894	17703	27612	0	7
P-0037146-T01-IM6	SOMATIC	EGFR		7	7	55224145	56085559	Intron of EGFR(+):80bp before exon 9	Intron of PSPH(-):487bp before exon 6		GRCh37	DUPLICATION			EGFR-intragenic	PRECISE	5to3	EGFR (NM_005228) Rearrangement : c.1007-81:EGFR_c.276-487:PSPHdup			861414	44590	81810	0	22
P-0038436-T01-IM6	SOMATIC	EGFR		7	7	38139660	55260266	IGR: 78Kb before STARD3NL(+)	Intron of EGFR(+):192bp before exon 22		GRCh37	INVERSION			EGFR-intragenic	PRECISE	5to5	EGFR (NM_005228) rearrangement: c.2626-193:EGFR_chr7:g.38139660inv			17120606	107344	171165	0	28
P-0044733-T01-IM7	SOMATIC	EGFR		7	7	53964598	55222806	IGR: 241Kb before LINC01446(-)	Intron of EGFR(+):716bp before exon 8		GRCh37	DELETION			EGFR-intragenic	PRECISE	3to5	EGFR (NM_005228) rearrangement: c.890-717:EGFR_chr7:g.53964598del			1258208	22765	29740	0	13
P-0073373-T01-IM7	SOMATIC	EGFR		7	7	55166500	57953705	Intron of EGFR(+):43Kb before exon 2	IGR: 444Kb before ZNF716(+)		GRCh37	INVERSION			EGFR-intragenic	PRECISE	3to3	EGFR (NM_005228) rearrangement: c.89-43479:EGFR_chr7:g.57953705inv			2787205	120193	83103	0	8
P-0079108-T01-IM7	SOMATIC	EGFR		7	7	55231002	55236201	Intron of EGFR(+):423bp before exon 14	Intron of EGFR(+):3Kb before exon 16		GRCh37	INVERSION			EGFR-intragenic	IMPPRECISE	5to5	EGFR (NM_005228) rearrangement: c.1632-424_c.1881-2667inv			5199	10880	13863	0	23
P-0029645-T01-IM6	SOMATIC	EGFR									GRCh37				EGFR-intragenic - Archer			EGFR vIII: POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  EGFR Exons 2-7 deletion (NM_005228)	yes	unknown					
P-0039604-T01-IM6	SOMATIC	EGFR									GRCh37				EGFR-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR AN ONCOGENIC ISOFORM THE INVESTIGATIONAL PANEL:  EGFR Kinase domain duplication involving Exons 18-25 (NM_005228). PMID: 26286086	yes	unknown					
P-0039794-T01-IM6	SOMATIC	EGFR									GRCh37				EGFR-intragenic - Archer			EGFR vIII:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   EGFR (NM_005228) Exons 2-7 Deletion (EGFRvIII).   Note: this alteration was detected at low frequency.	yes	unknown					
P-0073575-T01-IM7	SOMATIC	EGFR									GRCh37				EGFR-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:    EGFR (NM_005228) Exons 2-7 Deletion (EGFRvIII).	yes	unknown					
P-0051778-T01-IM6	SOMATIC	EGFR	RSPO4								GRCh37				EGFR-RSPO4 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EGFR-RSPO4 fusion. Note: The rearrangement is an in-frame fusion between genes EGFR Exon1 (NM_005228) and RSPO4 Exon2 (NM_001029871).	yes	unknown					
P-0055752-T01-IM6	SOMATIC	EGFR	SEPTIN14								GRCh37				EGFR-SEPT14 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EGFR-SEPT14 fusion. Note: The rearrangement is an in-frame fusion between genes EGFR Exon26 (NM_005228) and SEPT14 Exon10 (NM_207366). POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  EGFR vIII,  EGFR Exons 2-7 deletion (NM_005228)	yes	unknown					
P-0060411-T01-IM7	SOMATIC	EGFR	VOPP1								GRCh37				EGFR-VOPP1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EGFR-VOPP1 fusion. Note: The rearrangement is an in-frame fusion between genes EGFR Exon1 (NM_005228) and VOPP1 Exon2 (NM_001321242). Note 2: The EGFR-VOPP1 fusion was detected at a very low level. This fusion being a secondary event to EGFR amplification cannot be excluded.	yes	unknown					
P-0068283-T01-IM7	SOMATIC	EGFR	VOPP1								GRCh37				EGFR-VOPP1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EGFR-VOPP1 fusion. Note: The rearrangement is an in-frame fusion between genes EGFR Exon1 (NM_005228) and VOPP1 Exon5 (NM_030796). Note1: The fusion was detected with very low support. Note2: The functional significance of this event is unknown.	yes	unknown					
P-0007080-T03-IM6	SOMATIC	EGFR	LIMK1	7	7	55266441	73499466	Exon 23 of EGFR(+)	Intron of LIMK1(+):611bp before exon 2		GRCh37	INVERSION	0	9	LIMK1-EGFR fusion	IMPPRECISE	5to5	EGFR (NM_005228) - LIMK1 (NM_002314)  rearrangement: c.2733:EGFR_c.56-612:LIMK1inv	yes	unknown	18233025	55925	57661	0	10
P-0076967-T02-IM7	SOMATIC	EGFR	SEPTIN14	7	7	55268710	55866460	Intron of EGFR(+):170bp before exon 25	Intron of SEPT14(-):3Kb before exon 10		GRCh37	INVERSION			Protein Fusion: in frame  {EGFR:SEPT14}	PRECISE	3to3	EGFR (NM_005228)- SEPT14(NM_207366) rearrangment: t(7;7)(p11.2;p11.2)(chr7:g.55268710::chr7:g.55866460)			597750	20966	101933	0	621
P-0016009-T01-IM6	SOMATIC	EGFR	VOPP1	7	7	55220393	55611984	Intron of EGFR(+):36bp after exon 6	Intron of VOPP1(-):23Kb before exon 2		GRCh37	INVERSION	9	4	Protein Fusion: in frame  {EGFR:VOPP1}	PRECISE	3to3	EGFR (NM_005228) - VOPP1 (NM_030796): c.747+36:EGFR_c.55-23161VOPP1inv	yes	unknown	391591	58593	421394	0	4
P-0027944-T01-IM6	SOMATIC	EGFR	FADD	11	7	70052330	55241077	Exon 2 of FADD(+)	Intron of EGFR(+):260bp after exon 17		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {EGFR:FADD}	PRECISE	5to3	EGFR (NM_005228) - FADD (NM_003824) rearrangement: t(7;11)(p11.2;q13.3)(chr7:g55241077::chr11:g70052330)			0	0	0	0	124
P-0051644-T01-IM6	SOMATIC	EI24	CHEK1	11	11	125451179	125499230	Exon 9 of EI24(+)	Intron of CHEK1(+):39bp after exon 4		GRCh37	DELETION	10	17	Protein Fusion: mid-exon  {EI24:CHEK1}	PRECISE	3to5	EI24 (NM_001007277) - CHEK1 (NM_001274) rearrangement: c.674-1063:EI24_c.354+39:CHEK1del	yes	unknown	48051	1443	3424	0	29
P-0071022-T01-IM7	SOMATIC	EIF1AX	AGR3	X	7	20150337	17022423	Exon 5 of EIF1AX(-)	IGR: 123Kb before AGR3(-)		GRCh37	TRANSLOCATION	10	12	EIF1AX-intragenic	PRECISE	3to5	EIF1AX (NM_001412) rearrangement: t(7;X)(p21.1;p22.12)(chr7:g.17022423::chrX:g.20150337)	yes	unknown	0	0	0	0	12
P-0024083-T01-IM6	SOMATIC	EIF2AK2	INHA	2	2	37386053	220440232	Promoter of EIF2AK2(-):54Kb from tx start	Exon 2 of INHA(+)		GRCh37	INVERSION	10	82	Protein Fusion: mid-exon  {INHA:EIF2AK2}	PRECISE	3to3	INHA (NM_002191) rearrangement: chr2:g.37386053_c.1085inv	yes	unknown	183054179	766607	867433	0	85
P-0019529-T01-IM6	SOMATIC	EIF3H	RAD21	8	8	117708909	117869482	Intron of EIF3H(-):29Kb after exon 2	Intron of RAD21(-):23bp after exon 6		GRCh37	DELETION	10	9	Protein Fusion: in frame  {RAD21:EIF3H}	PRECISE	3to5	RAD21 (NM_006265) - EIF3H (NM_003756) rearrangement: c.688+24:RAD21_c.289+29346:EIF3Hdel	yes	unknown	160573	11328	15222	0	9
P-0073278-T01-IM7	SOMATIC	EIF3H	RAD21	8	8	117755326	117875347	Intron of EIF3H(-):13Kb after exon 1	Intron of RAD21(-):21bp after exon 3		GRCh37	DUPLICATION	9	8	Protein Fusion: out of frame  {EIF3H:RAD21}	PRECISE	5to3	EIF3H (NM_003756) - RAD21 (NM_006265) rearrangement: c.132+12579:EIF3H_c.274+22:RAD21dup	yes	unknown	120021	12317	67229	0	9
P-0014809-T01-IM6	SOMATIC	EIF4A2	RFC4	3	3	186505084	186510598	Intron of EIF4A2(+): 31bp after exon 8	Exon 6 of RFC4(-)		GRCh37	DELETION	14	11	Antisense fusion	PRECISE	3to5	EIF4A2 (NM_001967) - RFC4 (NM_002916) rearrangement: c.909+31:EIF4A2_c.549:RFC4del	yes	unknown	5514	2898	3279	0	11
P-0037252-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186499812	186505793	Promoter of EIF4A2(+):2Kb from tx start	Intron of EIF4A2(+):122bp after exon 10		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	3to3	EIF4A2 (NM_001967) rearrangement: c.1079+122:EIF4A2_chr3:g.186499812inv	yes	unknown	5981	8950	10404	0	12
P-0039680-T01-IM6	SOMATIC	EIF4A2	EIF4A2	10	3	113877258	186506982	IGR: 32Kb before GPAM(-)	Exon 11 of EIF4A2(+)		GRCh37	TRANSLOCATION	10	6	EIF4A2-intragenic	PRECISE	3to5	EIF4A2 (NM_001967) rearrangement: t(3;10)(q27.3;q25.2)(chr3:g.186506982::chr10:g.113877258)	yes	unknown	0	0	0	0	6
P-0065101-T01-IM7	SOMATIC	EIF4A2	EIF4A2	12	3	59612352	186506996	IGR: 346Kb before LRIG3(-)	Exon 11 of EIF4A2(+)		GRCh37	TRANSLOCATION	10	5	EIF4A2-intragenic	PRECISE	3to3	EIF4A2 (NM_001967) rearrangement: t(3;12)(q27.3;q14.1)(chr3:g.186506996::chr12:g.59612352)	yes	unknown	0	0	0	0	5
P-0053343-T01-IM6	SOMATIC	EIF4A2		3	3	186479665	186502236	IGR: 22Kb before EIF4A2(+)	Exon 2 of EIF4A2(+)		GRCh37	DELETION			EIF4A2-intragenic	PRECISE	3to5	EIF4A2 (NM_001967) rearrangement: c.45:EIF4A2_chr3:g.186479665del			22571	1633	2612	0	13
P-0070988-T01-IM7	SOMATIC	EIF4A2	ETV1	7	3	14018982	186502636	Intron of ETV1(-):2Kb before exon 5	Intron of EIF4A2(+):114bp before exon 4		GRCh37	TRANSLOCATION	10	33	Protein Fusion: in frame  {EIF4A2:ETV1}	PRECISE	3to3	EIF4A2 (NM_001967) - ETV1 (NM_001163147) rearrangement: t(3;7)(q27.3;p21.2)(chr3:g.186502636::chr7:g.14018982)	yes	unknown	0	0	0	0	32
P-0005264-T01-IM5	SOMATIC	EIF4A2	RFC4	3	3	186503740	186523623	Exon 5 of EIF4A2(+)	5-UTR of RFC4(-): 1Kb before coding start		GRCh37	INVERSION	31	26	Protein fusion: mid-exon (EIF4A2-RFC4)	PRECISE	3to3	EIF4A2 (NM_001967) - RFC4 (NM_002916) Rearrangement: c.417:EIF4A2_c.-12+456:RFC4inv	yes	unknown	19883	11083	10375	0	17
P-0004850-T01-IM5	SOMATIC	EIF4A2	ABCF3	3	3	183910791	186505445	Intron of ABCF3(+): 99bp before exon 19	Intron of EIF4A2(+): 72bp after exon 9		GRCh37	DUPLICATION			Protein fusion: out of frame (EIF4A2-ABCF3)	PRECISE	5to3	EIF4A2(NM_001967) - ABCF3(NM_018358) Rearrangement : c.999+72:EIF4A2_c.1751-99:ABCF3dup			2594654	90656	123278	0	35
P-0011259-T01-IM5	SOMATIC	EIF4E		8	4	21254285	99849955	IGR: 295Kb before GFRA2(-)	Intron of EIF4E(-): 91bp after exon 1		GRCh37	TRANSLOCATION			EIF4E-intragenic	PRECISE	5to5	EIF4E (NM_001130678) Rearrangement : t(4;8)(q23;p21.3)(chr4:g.99849955::chr8:g.21254285)			0	0	0	0	13
P-0037692-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201979985	201982188	5-UTR of ELF3(+):279bp before coding start	Intron of ELF3(+):24bp after exon 6		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	3to3	ELF3 (NM_004433) Rearrangement : c.-9+151_c.688+24inv	yes	unknown	2203	9611	12732	0	17
P-0067390-T01-IM7	SOMATIC	ELF3	ELF3	9	1	116052170	201981531	Intron of PRPF4(+):575bp before exon 11	Exon 4 of ELF3(+)		GRCh37	TRANSLOCATION	10	23	Antisense Fusion	PRECISE	3to3	ELF3 (NM_004433) rearrangement: t(1;9)(q32.1;q32)(chr1:g.201981531::chr9:g.116052170)	yes	unknown	0	0	0	0	22
P-0083435-T01-IM7	SOMATIC	ELF3		1	1	201967342	201981935	Intron of RNPEP(+):660bp after exon 5	Intron of ELF3(+):48bp after exon 5		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	ELF3 (NM_004433) rearrangement: c.598+48:ELF3_chr1:g.201967342inv			14593	5080	10779	0	9
P-0061666-T03-IM7	SOMATIC	ELF3	ELF3	1	1	201977244	201980884	Promoter of ELF3(+):2Kb from tx start	Intron of ELF3(+):200bp before exon 3		GRCh37	DELETION	6	12	Deletion within transcript	PRECISE	3to5	ELF3 (NM_004433) rearrangement: c.164-201:ELF3_chr1:g.201977244del	yes	unknown	3640	2197	1500	0	12
P-0014755-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980095	201981303	5-UTR of ELF3(+): 170bp before coding start	Exon 3 of ELF3(+)		GRCh37	DUPLICATION	13	9	Duplication within transcript: mid-exon	PRECISE	5to3	ELF3 (NM_004433) rearrangement: c.-8-162_c.382dup	yes	unknown	1208	4973	5993	0	9
P-0019370-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201984432	201985589	Exon 9 of ELF3(+)	3-UTR of ELF3(+):5Kb after coding stop		GRCh37	DELETION	10	5	ELF3-intragenic	PRECISE	3to5	ELF3 (NM_004433)  Rearrangement : c.1097_c.*1138del	yes	unknown	1157	534	372	0	5
P-0000631-T03-IM6	SOMATIC	ELF3	ELF3	3	1	146132148	201984440	IGR: 19Kb before PLSCR2(-)	Exon 9 of ELF3(+)		GRCh37	TRANSLOCATION	10	12	ELF3-intragenic	PRECISE	5to5	ELF3 (NM_004433) rearrangement: t(1;3)(q32.1;q24)(chr1:g.201984440::chr3:g.146132148)	yes	unknown	0	0	0	0	14
P-0078534-T01-IM7	SOMATIC	ELF3	ELF3	1	1	201979138	201981016	Promoter of ELF3(+):551bp from tx start	Intron of ELF3(+):68bp before exon 3		GRCh37	INVERSION	10	9	ELF3-intragenic	PRECISE	5to5	ELF3 (NM_004433) rearrangement: c.164-69:ELF3_chr1:g.201979138inv	yes	unknown	1878	1673	1193	0	9
P-0074996-T02-IM7	SOMATIC	ELF3	ELF3	1	1	52387304	201982396	Intron of RAB3B(-):2Kb before exon 5	Exon 7 of ELF3(+)		GRCh37	DELETION	10	12	ELF3-intragenic	PRECISE	3to5	ELF3 (NM_004433) rearrangement: c.775:ELF3_chr1:g.52387304del	yes	unknown	149595092	834543	915911	0	12
P-0082444-T01-IM7	SOMATIC	ELF3		1	1	201984365	211908742	Exon 9 of ELF3(+)	IGR: 8Kb before LPGAT1(-)		GRCh37	INVERSION			ELF3-intragenic	PRECISE	3to3	ELF3 (NM_004433) rearrangement: c.1030:ELF3_chr1:g.211908742inv			9924377	75907	173158	0	14
P-0020309-T01-IM6	SOMATIC	ELF3		1	1	201980424	215436498	Exon 2 of ELF3(+)	IGR: 180Kb before KCNK2(+)		GRCh37	DELETION			ELF3-intragenic	IMPPRECISE	3to5	ELF3 (NM_004433) rearrangement: c.160:ELF3_chr1:g.215436498del			13456074	79809	155717	0	6
P-0019489-T01-IM6	SOMATIC	ELF3	CAPN2	1	1	201980552	223941868	Intron of ELF3(+):125bp after exon 2	Intron of CAPN2(+):1Kb after exon 9		GRCh37	DELETION	5	3	Protein Fusion: in frame  {ELF3:CAPN2}	PRECISE	3to5	ELF3 (NM_004433) - CAPN2 (NM_001748) rearrangement: c.163+125:ELF3_c.1135+1210:CAPN2del	yes	unknown	21961316	85756	86370	0	3
P-0041866-T01-IM6	SOMATIC	ELF3	CSAD	12	1	53556508	201981995	Intron of CSAD(-):1Kb before exon 2	Intron of ELF3(+):79bp before exon 6		GRCh37	TRANSLOCATION	10	15	Protein Fusion: out of frame  {ELF3:CSAD}	PRECISE	3to3	ELF3 (NM_004433) - CSAD (NM_001244705) rearrangement: t(1;12)(q32.1;q13.13)(chr1:g.201981995::chr12:g.53556508)	yes	unknown	0	0	0	0	16
P-0017929-T01-IM6	SOMATIC	ELF3	LGR6	1	1	201982834	202239848	Intron of ELF3(+):122bp before exon 8	Intron of LGR6(+):6Kb before exon 5		GRCh37	DUPLICATION	10	14	Protein Fusion: out of frame  {LGR6:ELF3}	PRECISE	5to3	LGR6 (NM_001017403) - ELF3 (NM_004433) rearrangement: c.429-5586:LGR6_c.806-123:ELF3dup	yes	unknown	257014	5437	8779	0	14
P-0076697-T02-IM7	SOMATIC	ELL	JAK3	19	19	17952304	18557889	Exon 8 of JAK3(-)	Intron of ELL(-):265bp before exon 9		GRCh37	DELETION	10	6	Protein Fusion: mid-exon  {ELL:JAK3}	PRECISE	3to5	ELL (NM_006532) - JAK3 (NM_000215) rearrangement: c.1466-265:ELL_c.1036:JAK3del	yes	unknown	605585	30166	41511	0	6
P-0011281-T01-IM5	SOMATIC	ELP4	WT1	11	11	31748874	32413454	Intron of ELP4(+): 56Kb before exon 10	Intron of WT1(-): 64bp after exon 9		GRCh37	INVERSION	27	30	Protein fusion: out of frame (WT1-ELP4)	PRECISE	5to5	WT1 (NM_024426) - ELP4 (NM_019040) rearrangement: c.1432+64:WT1_c.1144-56067:ELP4inv	yes	unknown	664580	3139	3600	0	29
P-0034773-T01-IM6	SOMATIC	EMID1	EWSR1	22	22	29653600	29684132	Intron of EMID1(+):1Kb before exon 15	Intron of EWSR1(+):462bp before exon 9		GRCh37	DUPLICATION	10	3	Protein Fusion: in frame  {EWSR1:EMID1}	PRECISE	5to3	EWSR1 (NM_013986) - EMID1 (NM_133455) rearrangement: c.812-463:EWSR1_c.1205-1206:EMID1dup	yes	unknown	30532	5156	1746	0	3
P-0005190-T01-IM5	SOMATIC	EMID1	EWSR1	22	22	29602939	29687753	Intron of EMID1(+): 811bp after exon 1	Intron of EWSR1(+): 165bp after exon 8		GRCh37	DELETION	32	13	Protein fusion: out of frame (EMID1-EWSR1)	PRECISE	3to5	EMID1 (NM_133455) - EWSR1 (NM_013986) Rearrangement :  c.101+811:EMID1_c.794-373:EWSR1del	yes	unknown	84814	17609	22100	0	13
P-0018573-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0037982-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0041438-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0041908-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon5 (NM_001145076) and ALK Exon18 (NM_004304).	yes	unknown					
P-0043594-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon3 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0055607-T02-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon19 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0027685-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0022509-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0040193-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon17 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0045557-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon6 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0026108-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon13 (NM_019063) and ALK Exon20 (NM_004304). Note: EML4-ALK fusion transcript includes 93bp of unknown sequence.	yes	unknown					
P-0033180-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon6 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0042281-T01-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon6 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0049509-T02-IM6	SOMATIC	EML4	ALK								GRCh37				EML4-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-ALK fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon6 (NM_019063) and ALK Exon20 (NM_004304).	yes	unknown					
P-0038638-T01-IM6	SOMATIC	EML4	NTRK3								GRCh37				EML4-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EML4-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes EML4 Exon2 (NM_019063) and NTRK3 Exon14 (NM_002530).	yes	unknown					
P-0069565-T01-IM7	SOMATIC	EML4	ALK	2	2	29448098	42506695	Intron of ALK(-):228bp after exon 19	Intron of EML4(+):1Kb before exon 6		GRCh37	INVERSION	10	3	Protein Fusion: in frame  {ALK:EML4}	PRECISE	5to5	EML4 (NM_019063) -ALK (NM_004304) fusion: c.668-1295:EML4_c.3172+229:ALKinv	yes	unknown	13058597	86643	128529	0	7
P-0037982-T01-IM6	SOMATIC	EML4	ALK	2	2	29446479	42528243	Intron of ALK(-):85bp before exon 20	Intron of EML4(+):137bp before exon 13		GRCh37	INVERSION	10	97	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-138:EML4_c.3173-85:ALKinv	yes	unknown	13081764	126499	176420	0	97
P-0038772-T01-IM6	SOMATIC	EML4	ALK	2	2	29446687	42553539	Intron of ALK(-):293bp before exon 20	Intron of EML4(+):147bp after exon 20		GRCh37	INVERSION	10	78	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2341+147:EML4_c.3173-293:ALKinv	yes	unknown	13106852	107451	134473	0	76
P-0040574-T01-IM6	SOMATIC	EML4	ALK	2	2	29447738	42506401	Intron of ALK(-):588bp after exon 19	Intron of EML4(+):2Kb before exon 6		GRCh37	INVERSION	10	103	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon5 fused with ALK exon20) : c.668-1589:EML4_c.3172+589:ALKinv	yes	unknown	13058663	108195	161675	0	103
P-0031368-T04-IM6	SOMATIC	EML4	ALK	2	2	29447191	42527227	Intron of ALK(-):797bp before exon 20	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	97	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1154:EML4_c.3173-797:ALKinv	yes	unknown	13080036	107906	101192	0	96
P-0044042-T01-IM6	SOMATIC	EML4	ALK	2	2	29447727	42506309	Intron of ALK(-):599bp after exon 19	Intron of EML4(+):2Kb before exon 6		GRCh37	INVERSION	10	28	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1681:EML4_c.3172+600:ALKinv	yes	unknown	13058582	120971	101090	0	28
P-0045243-T01-IM6	SOMATIC	EML4	ALK	2	2	29448298	42504926	Intron of ALK(-):28bp after exon 19	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	31	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3064:EML4_c.3172+29:ALKinv	yes	unknown	13056628	104724	80935	0	40
P-0045341-T01-IM6	SOMATIC	EML4	ALK	2	2	29447920	42503556	Intron of ALK(-):406bp after exon 19	Intron of EML4(+):4Kb before exon 6		GRCh37	INVERSION	10	102	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4434:EML4_c.3172+407:ALKinv	yes	unknown	13055636	58665	116428	0	101
P-0046083-T01-IM6	SOMATIC	EML4	ALK	2	2	29446665	42523642	Intron of ALK(-):271bp before exon 20	Intron of EML4(+):986bp after exon 12		GRCh37	INVERSION	10	73	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+986:EML4_c.3173-271:ALKinv	yes	unknown	13076977	98463	211559	0	73
P-0043860-T02-IM6	SOMATIC	EML4	ALK	2	2	29446931	42527401	Intron of ALK(-):537bp before exon 20	Intron of EML4(+):979bp before exon 13		GRCh37	INVERSION	10	64	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-980:EML4_c.3173-537:ALKinv	yes	unknown	13080470	94568	159574	0	134
P-0046594-T01-IM6	SOMATIC	EML4	ALK	2	2	29446445	42494088	Intron of ALK(-):51bp before exon 20	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION	7	9	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2217:EML4_c.3173-51:ALKinv	yes	unknown	13047643	110484	112468	0	9
P-0047355-T01-IM6	SOMATIC	EML4	ALK	2	2	29446609	42492796	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):925bp after exon 5		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+925:EML4_c.3173-215:ALKinv	yes	unknown	13046187	86908	87151	0	30
P-0049375-T01-IM6	SOMATIC	EML4	ALK	2	2	29446732	42493037	Intron of ALK(-):338bp before exon 20	Intron of EML4(+):1Kb after exon 5		GRCh37	INVERSION	10	118	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1166:EML4_c.3173-338:ALKinv	yes	unknown	13046305	78666	130875	0	116
P-0051231-T01-IM6	SOMATIC	EML4	ALK	2	2	29446774	42496001	Intron of ALK(-):380bp before exon 20	Intron of EML4(+):4Kb after exon 5		GRCh37	INVERSION	10	39	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4130:EML4_c.3173-380:ALKinv	yes	unknown	13049227	97139	79629	0	39
P-0052088-T01-IM6	SOMATIC	EML4	ALK	2	2	29447586	42522876	Intron of ALK(-):740bp after exon 19	Intron of EML4(+):220bp after exon 12		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+220:EML4_c.3172+741:ALKinv	yes	unknown	13075290	118794	108205	0	19
P-0052297-T02-IM6	SOMATIC	EML4	ALK	2	2	29448255	42528220	Intron of ALK(-):71bp after exon 19	Intron of EML4(+):160bp before exon 13		GRCh37	INVERSION	10	55	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-161:EML4_c.3172+72:ALKinv	yes	unknown	13079965	115519	161272	0	54
P-0054263-T01-IM6	SOMATIC	EML4	ALK	2	2	29446557	42507780	Intron of ALK(-):163bp before exon 20	Intron of EML4(+):209bp before exon 6		GRCh37	INVERSION	10	28	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-210:EML4_c.3173-163:ALKinv	yes	unknown	13061223	53872	170724	0	28
P-0054408-T01-IM6	SOMATIC	EML4	ALK	2	2	29446902	42553032	Intron of ALK(-):508bp before exon 20	Intron of EML4(+):261bp before exon 20		GRCh37	INVERSION	10	48	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-262:EML4_c.3173-508:ALKinv	yes	unknown	13106130	132442	96381	0	48
P-0049511-T01-IM6	SOMATIC	EML4	ALK	2	2	29446991	42552703	Intron of ALK(-):597bp before exon 20	Intron of EML4(+):9bp after exon 19		GRCh37	INVERSION	10	58	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+9:EML4_c.3173-597:ALKinv	yes	unknown	13105712	81486	129840	0	58
P-0052035-T03-IM6	SOMATIC	EML4	ALK	2	2	29447656	42552773	Intron of ALK(-):670bp after exon 19	Intron of EML4(+):79bp after exon 19		GRCh37	INVERSION	10	42	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+79:EML4_c.3172+671:ALKinv	yes	unknown	13105117	100432	93825	0	41
P-0012873-T02-IM6	SOMATIC	EML4	ALK	2	2	29446439	42524887	Intron of ALK(-):45bp before exon 20	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	208	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2231:EML4_c.3173-45:ALKinv	yes	unknown	13078448	104655	96128	0	206
P-0058234-T02-IM7	SOMATIC	EML4	ALK	2	2	29447241	42506830	Intron of ALK(-):847bp before exon 20	Intron of EML4(+):1Kb before exon 6		GRCh37	INVERSION	10	4	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1160:EML4_c.3173-847:ALKinv	yes	unknown	13059589	126612	91643	0	5
P-0058599-T02-IM7	SOMATIC	EML4	ALK	2	2	29446415	42527036	Intron of ALK(-):21bp before exon 20	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	51	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1345:EML4_c.3173-21:ALKinv	yes	unknown	13080621	101267	107168	0	57
P-0059257-T02-IM7	SOMATIC	EML4	ALK	2	2	29448210	42507008	Intron of ALK(-):116bp after exon 19	Intron of EML4(+):981bp before exon 6		GRCh37	INVERSION	10	34	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-982:EML4_c.3172+117:ALKinv	yes	unknown	13058798	115325	174253	0	37
P-0060148-T01-IM7	SOMATIC	EML4	ALK	2	2	29447757	42525256	Intron of ALK(-):569bp after exon 19	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION	10	43	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2600:EML4_c.3172+570:ALKinv	yes	unknown	13077499	129397	168759	0	42
P-0025095-T01-IM6	SOMATIC	EML4	ALK	2	2	29447321	42553016	Intron of ALK(-):927bp before exon 20	Intron of EML4(+):277bp before exon 20		GRCh37	INVERSION	10	49	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20 -29): c.2243-278:EML4_c.3173-927:ALKinv	yes	unknown	13105695	106312	124682	0	49
P-0045222-T01-IM6	SOMATIC	EML4	ALK	2	2	29447488	42553264	Intron of ALK(-):838bp after exon 19	Intron of EML4(+):29bp before exon 20		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-30:EML4_c.3172+839:ALKinv	yes	unknown	13105776	107271	94276	0	24
P-0059699-T03-IM7	SOMATIC	EML4	ALK	2	2	29447467	42526391	Intron of ALK(-):859bp after exon 19	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	40	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1990:EML4_c.3172+860:ALKinv	yes	unknown	13078924	110135	93261	0	40
P-0043041-T01-IM6	SOMATIC	EML4	ALK	2	2	29446597	42524438	Intron of ALK(-):203bp before exon 20	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	58	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1782:EML4_c.3173-203:ALKinv	yes	unknown	13077841	104260	116313	0	58
P-0037491-T01-IM6	SOMATIC	EML4	ALK	2	2	29446786	42527261	Intron of ALK(-):392bp before exon 20	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	122	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon12 fused with ALK exon20): c.1490-1120:EML4_c.3173-392:ALKinv	yes	unknown	13080475	91798	152107	0	122
P-0037925-T01-IM6	SOMATIC	EML4	ALK	2	2	29446522	42496505	Intron of ALK(-):128bp before exon 20	Intron of EML4(+):5Kb after exon 5		GRCh37	INVERSION	0	14	Protein Fusion: in frame  {EML4:ALK}	IMPPRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4634:EML4_c.3173-128:ALKinv	yes	unknown	13049983	137364	126224	0	14
P-0041967-T01-IM6	SOMATIC	EML4	ALK	2	2	29448147	42523103	Intron of ALK(-):179bp after exon 19	Intron of EML4(+):447bp after exon 12		GRCh37	INVERSION	10	39	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+447:EML4_c.3172+180:ALKinv	yes	unknown	13074956	84398	58923	0	39
P-0025040-T01-IM6	SOMATIC	EML4	ALK	2	2	29447152	42526441	Intron of ALK(-):758bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	56	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exon 12 fused to ALK exon 20) :  c.1316-1940:EML4_c.3173-758:ALKinv	yes	unknown	13079289	90732	59663	0	56
P-0034334-T01-IM6	SOMATIC	EML4	ALK	2	2	29446570	42496780	Intron of ALK(-):176bp before exon 20	Intron of EML4(+):5Kb after exon 5		GRCh37	INVERSION	10	100	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4909:EML4_c.3173-176:ALKinv	yes	unknown	13050210	140173	127181	0	99
P-0037404-T01-IM6	SOMATIC	EML4	ALK	2	2	29447872	42496834	Intron of ALK(-):454bp after exon 19	Intron of EML4(+):5Kb after exon 5		GRCh37	INVERSION	10	33	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4963:EML4_c.3172+455:ALKinv	yes	unknown	13048962	106044	76121	0	31
P-0040732-T02-IM6	SOMATIC	EML4	ALK	2	2	29446636	42526549	Intron of ALK(-):242bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	110	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1832:EML4_c.3173-242:ALKinv	yes	unknown	13079913	151577	99614	0	108
P-0022184-T01-IM6	SOMATIC	EML4	ALK	2	2	29447035	42524042	Intron of ALK(-):641bp before exon 20	Intron of EML4(+):1Kb after exon 12		GRCh37	INVERSION	10	51	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1315+1386:EML4_c.3173-641:ALKinv	yes	unknown	13077007	115766	134288	0	49
P-0040261-T01-IM6	SOMATIC	EML4	ALK	2	2	29447103	42527041	Intron of ALK(-):709bp before exon 20	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	102	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1340:EML4_c.3173-709:ALKinv	yes	unknown	13079938	86570	158842	0	108
P-0040570-T01-IM6	SOMATIC	EML4	ALK	2	2	29448160	42505486	Intron of ALK(-):166bp after exon 19	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	9	4	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2504:EML4_c.3172+167:ALKinv	yes	unknown	13057326	105000	117079	0	4
P-0040600-T01-IM6	SOMATIC	EML4	ALK	2	2	29447688	42493666	Intron of ALK(-):638bp after exon 19	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION	10	58	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1795:EML4_c.3172+639:ALKinv	yes	unknown	13045978	93801	73952	0	58
P-0044988-T01-IM6	SOMATIC	EML4	ALK	2	2	29447794	42525326	Intron of ALK(-):532bp after exon 19	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION	10	18	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2670:EML4_c.3172+533:ALKinv	yes	unknown	13077532	79103	90000	0	18
P-0062999-T02-IM7	SOMATIC	EML4	ALK	2	2	29447091	42526326	Intron of ALK(-):697bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	94	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2055:EML4_c.3173-697:ALKinv	yes	unknown	13079235	123377	103269	0	90
P-0062985-T02-IM7	SOMATIC	EML4	ALK	2	2	29447199	42496432	Intron of ALK(-):805bp before exon 20	Intron of EML4(+):5Kb after exon 5		GRCh37	INVERSION	10	14	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4561:EML4_c.3173-805:ALKinv	yes	unknown	13049233	123545	163448	0	14
P-0063585-T01-IM7	SOMATIC	EML4	ALK	2	2	29446884	42505177	Intron of ALK(-):490bp before exon 20	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2813:EML4_c.3173-490:ALKinv	yes	unknown	13058293	105743	133058	0	23
P-0064342-T01-IM7	SOMATIC	EML4	ALK	2	2	29446534	42476869	Intron of ALK(-):140bp before exon 20	Intron of EML4(+):4Kb after exon 2		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+4042:EML4_c.3173-140:ALKinv	yes	unknown	13030335	120097	153562	0	23
P-0065210-T01-IM7	SOMATIC	EML4	ALK	2	2	29448076	42505978	Intron of ALK(-):250bp after exon 19	Intron of EML4(+):2Kb before exon 6		GRCh37	INVERSION	10	31	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2012:EML4_c.3172+251:ALKinv	yes	unknown	13057902	116238	112430	0	33
P-0023375-T02-IM7	SOMATIC	EML4	ALK	2	2	29447854	42525653	Intron of ALK(-):472bp after exon 19	Intron of EML4(+):3Kb before exon 13		GRCh37	INVERSION	10	29	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2728:EML4_c.3172+473:ALKinv	yes	unknown	13077799	41364	135779	0	29
P-0066568-T02-IM7	SOMATIC	EML4	ALK	2	2	29448072	42495299	Intron of ALK(-):254bp after exon 19	Intron of EML4(+):3Kb after exon 5		GRCh37	INVERSION	10	34	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+3428:EML4_c.3172+255:ALKinv	yes	unknown	13047227	120930	176093	0	34
P-0067069-T01-IM7	SOMATIC	EML4	ALK	2	2	29448169	42524961	Intron of ALK(-):157bp after exon 19	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	74	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2305:EML4_c.3172+158:ALKinv	yes	unknown	13076792	115920	157428	0	73
P-0067048-T02-IM7	SOMATIC	EML4	ALK	2	2	29447391	42494087	Intron of ALK(-):935bp after exon 19	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION	10	32	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2216:EML4_c.3172+936:ALKinv	yes	unknown	13046696	80178	160901	0	32
P-0064716-T02-IM7	SOMATIC	EML4	ALK	2	2	29447739	42504321	Intron of ALK(-):587bp after exon 19	Intron of EML4(+):4Kb before exon 6		GRCh37	INVERSION	10	3	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3669:EML4_c.3172+588:ALKinv	yes	unknown	13056582	123518	35759	0	3
P-0068467-T02-IM7	SOMATIC	EML4	ALK	2	2	29448295	42524222	Intron of ALK(-):31bp after exon 19	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	131	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1566:EML4_c.3172+32:ALKinv	yes	unknown	13075927	92406	162024	0	131
P-0069396-T02-IM7	SOMATIC	EML4	ALK	2	2	29446944	42503682	Intron of ALK(-):550bp before exon 20	Intron of EML4(+):4Kb before exon 6		GRCh37	INVERSION	10	33	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4308:EML4_c.3173-550:ALKinv	yes	unknown	13056738	87158	123581	0	32
P-0069535-T01-IM7	SOMATIC	EML4	ALK	2	2	29447764	42476656	Intron of ALK(-):562bp after exon 19	Intron of EML4(+):4Kb after exon 2		GRCh37	INVERSION	10	108	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+3829:EML4_c.3172+563:ALKinv	yes	unknown	13028892	137277	141938	0	106
P-0069617-T01-IM7	SOMATIC	EML4	ALK	2	2	29448017	42499692	Intron of ALK(-):309bp after exon 19	Intron of EML4(+):8Kb after exon 5		GRCh37	INVERSION	10	21	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+7821:EML4_c.3172+310:ALKinv	yes	unknown	13051675	108654	128620	0	21
P-0070456-T01-IM7	SOMATIC	EML4	ALK	2	2	29446600	42495573	Intron of ALK(-):206bp before exon 20	Intron of EML4(+):4Kb after exon 5		GRCh37	INVERSION	10	9	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+3702:EML4_c.3173-206:ALKinv	yes	unknown	13048973	117519	138511	0	8
P-0070646-T01-IM7	SOMATIC	EML4	ALK	2	2	29447998	42552846	Intron of ALK(-):328bp after exon 19	Intron of EML4(+):152bp after exon 19		GRCh37	INVERSION	10	28	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+152:EML4_c.3172+329:ALKinv	yes	unknown	13104848	113607	160677	0	28
P-0070540-T02-IM7	SOMATIC	EML4	ALK	2	2	29447043	42526543	Intron of ALK(-):649bp before exon 20	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	33	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1838:EML4_c.3173-649:ALKinv	yes	unknown	13079500	98099	123761	0	33
P-0071239-T01-IM7	SOMATIC	EML4	ALK	2	2	29447787	42527391	Intron of ALK(-):539bp after exon 19	Intron of EML4(+):989bp before exon 13		GRCh37	INVERSION	10	25	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-990:EML4_c.3172+540:ALKinv	yes	unknown	13079604	109827	121921	0	25
P-0071322-T01-IM7	SOMATIC	EML4	ALK	2	2	29447882	42553214	Intron of ALK(-):444bp after exon 19	Intron of EML4(+):79bp before exon 20		GRCh37	INVERSION	10	95	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-80:EML4_c.3172+445:ALKinv	yes	unknown	13105332	131705	138508	0	94
P-0071615-T01-IM7	SOMATIC	EML4	ALK	2	2	29446522	42507899	Intron of ALK(-):128bp before exon 20	Intron of EML4(+):90bp before exon 6		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-91:EML4_c.3173-128:ALKinv	yes	unknown	13061377	129644	130713	0	24
P-0072091-T01-IM7	SOMATIC	EML4	ALK	2	2	29446688	42553175	Intron of ALK(-):294bp before exon 20	Intron of EML4(+):118bp before exon 20		GRCh37	INVERSION	10	82	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-119:EML4_c.3173-294:ALKinv	yes	unknown	13106487	146294	176697	0	82
P-0072305-T01-IM7	SOMATIC	EML4	ALK	2	2	29446930	42496191	Intron of ALK(-):536bp before exon 20	Intron of EML4(+):4Kb after exon 5		GRCh37	INVERSION	10	7	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4320:EML4_c.3173-536:ALKinv	yes	unknown	13049261	104801	162597	0	7
P-0072651-T01-IM7	SOMATIC	EML4	ALK	2	2	29447093	42502671	Intron of ALK(-):699bp before exon 20	Intron of EML4(+):5Kb before exon 6		GRCh37	INVERSION	10	19	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-5319:EML4_c.3173-699:ALKinv	yes	unknown	13055578	70151	113899	0	19
P-0073294-T01-IM7	SOMATIC	EML4	ALK	2	2	29450731	42493928	Intron of ALK(-):193bp before exon 17	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2057:EML4_c.2816-193:ALKinv	yes	unknown	13043197	90289	126640	0	30
P-0072968-T02-IM7	SOMATIC	EML4	ALK	2	2	29448294	42525093	Intron of ALK(-):32bp after exon 19	Intron of EML4(+):2Kb after exon 12		GRCh37	INVERSION	10	16	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2437:EML4_c.3172+33:ALKinv	yes	unknown	13076799	104135	112539	0	16
P-0074777-T01-IM7	SOMATIC	EML4	ALK	2	2	29447316	42525163	Intron of ALK(-):922bp before exon 20	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION	10	36	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2507:EML4_c.3173-922:ALKinv	yes	unknown	13077847	96532	179059	0	36
P-0074824-T01-IM7	SOMATIC	EML4	ALK	2	2	29447416	42505063	Intron of ALK(-):910bp after exon 19	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	15	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2927:EML4_c.3172+911:ALKinv	yes	unknown	13057647	90107	121419	0	18
P-0074826-T01-IM7	SOMATIC	EML4	ALK	2	2	29447619	42527589	Intron of ALK(-):707bp after exon 19	Intron of EML4(+):791bp before exon 13		GRCh37	INVERSION	0	125	Protein Fusion: in frame  {EML4:ALK}	IMPPRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-792:EML4_c.3172+708:ALKinv	yes	unknown	13079970	116399	353996	0	379
P-0064515-T02-IM7	SOMATIC	EML4	ALK	2	2	29447623	42526472	Intron of ALK(-):703bp after exon 19	Intron of EML4(+):2Kb before exon 13		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1909:EML4_c.3172+704:ALKinv	yes	unknown	13078849	110117	136868	0	29
P-0019972-T03-IM7	SOMATIC	EML4	ALK	2	2	29448101	42493050	Intron of ALK(-):225bp after exon 19	Intron of EML4(+):1Kb after exon 5		GRCh37	INVERSION	10	93	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1179:EML4_c.3172+226:ALKinv	yes	unknown	13044949	91871	147115	0	93
P-0076501-T01-IM7	SOMATIC	EML4	ALK	2	2	29447883	42522991	Intron of ALK(-):443bp after exon 19	Intron of EML4(+):335bp after exon 12		GRCh37	INVERSION	10	529	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+335:EML4_c.3172+444:ALKinv	yes	unknown	13075108	99712	144184	0	529
P-0076670-T02-IM7	SOMATIC	EML4	ALK	2	2	29447309	42527762	Intron of ALK(-):915bp before exon 20	Intron of EML4(+):618bp before exon 13		GRCh37	INVERSION	10	18	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-619:EML4_c.3173-915:ALKinv	yes	unknown	13080453	113064	140831	0	17
P-0078718-T02-IM7	SOMATIC	EML4	ALK	2	2	29448293	42504613	Intron of ALK(-):33bp after exon 19	Intron of EML4(+):3Kb before exon 6		GRCh37	INVERSION	10	38	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3377:EML4_c.3172+34:ALKinv	yes	unknown	13056320	130224	118819	0	38
P-0079091-T01-IM7	SOMATIC	EML4	ALK	2	2	29447491	42527249	Intron of ALK(-):835bp after exon 19	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	22	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1132:EML4_c.3172+836:ALKinv	yes	unknown	13079758	85511	93108	0	22
P-0079320-T02-IM7	SOMATIC	EML4	ALK	2	2	29447424	42526887	Intron of ALK(-):902bp after exon 19	Intron of EML4(+):1Kb before exon 13		GRCh37	INVERSION	10	56	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1494:EML4_c.3172+903:ALKinv	yes	unknown	13079463	93961	130999	0	58
P-0078368-T02-IM7	SOMATIC	EML4	ALK	2	2	29447105	42525668	Intron of ALK(-):711bp before exon 20	Intron of EML4(+):3Kb before exon 13		GRCh37	INVERSION	10	103	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2713:EML4_c.3173-711:ALKinv	yes	unknown	13078563	146623	89706	0	103
P-0079086-T03-IM7	SOMATIC	EML4	ALK	2	2	29446662	42525391	Intron of ALK(-):268bp before exon 20	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION	10	26	Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2735:EML4_c.3173-268:ALKinv	yes	unknown	13078729	109605	50279	0	25
P-0081135-T01-IM7	SOMATIC	EML4	ALK	2	2	29447436	42552740	Intron of ALK(-):890bp after exon 19	Intron of EML4(+):46bp after exon 19		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	IMPPRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+46:EML4_c.3172+891:ALKinv			13105304	70992	107421	0	6
P-0082124-T01-IM7	SOMATIC	EML4	ALK	2	2	29446496	42494716	Intron of ALK(-):102bp before exon 20	Intron of EML4(+):3Kb after exon 5		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2845:EML4_c.3173-102:ALKinv			13048220	84111	149462	0	27
P-0083187-T01-IM7	SOMATIC	EML4	ALK	2	2	29448033	42525208	Intron of ALK(-):293bp after exon 19	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2552:EML4_c.3172+294:ALKinv			13077175	113623	123372	0	25
P-0064951-T04-IM7	SOMATIC	EML4	ALK	2	2	29447207	42554727	Intron of ALK(-):813bp before exon 20	Intron of EML4(+):1Kb before exon 21		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2342-1299:EML4_c.3173-813:ALKinv			13107520	117973	189616	0	110
P-0080789-T03-IM7	SOMATIC	EML4	ALK	2	2	29446915	42544352	Intron of ALK(-):521bp before exon 20	Intron of EML4(+):214bp before exon 18		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2057-215:EML4_c.3173-521:ALKinv			13097437	121711	191606	0	61
P-0086697-T01-IM7	SOMATIC	EML4	ALK	2	2	29447164	42522802	Intron of ALK(-):770bp before exon 20	Intron of EML4(+):146bp after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+146:EML4_c.3173-770:ALKinv			13075638	137305	165452	0	109
P-0087422-T01-IM7	SOMATIC	EML4	ALK	2	2	29447900	42528358	Intron of ALK(-):426bp after exon 19	Intron of EML4(+):22bp before exon 13		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-23:EML4_c.3172+427:ALKinv			13080458	119067	129566	0	32
P-0087382-T01-IM7	SOMATIC	EML4	ALK	2	2	29447117	42523583	Intron of ALK(-):723bp before exon 20	Intron of EML4(+):927bp after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+927:EML4_c.3173-723:ALKinv			13076466	120391	67638	0	11
P-0087682-T02-IM7	SOMATIC	EML4	ALK	2	2	29446907	42494301	Intron of ALK(-):513bp before exon 20	Intron of EML4(+):2Kb after exon 5		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2430:EML4_c.3173-513:ALKinv			13047394	92432	178806	0	83
P-0086359-T02-IM7	SOMATIC	EML4	ALK	2	2	29447872	42525362	Intron of ALK(-):454bp after exon 19	Intron of EML4(+):3Kb after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	IMPPRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2706:EML4_c.3172+455:ALKinv			13077490	116810	168839	0	57
P-0087669-T03-IM7	SOMATIC	EML4	ALK	2	2	29447692	42506247	Intron of ALK(-):634bp after exon 19	Intron of EML4(+):2Kb before exon 6		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1743:EML4_c.3172+635:ALKinv			13058555	54459	94533	0	65
P-0032862-T01-IM6	SOMATIC	EML4	ALK	2	2	29447488	42523327	Intron of ALK(-):838bp after exon 19	Intron of EML4(+):671bp after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) Fusion(EML4 exon 11 fused to ALK exon20 ): c.1489+671:EML4_c.3172+839:ALK			13075839	103215	110616	0	82
P-0005743-T02-IM5	SOMATIC	EML4	ALK	2	2	29447669	42553113	Intron of ALK(-): 658bp after exon 19	Intron of EML4(+): 181bp before exon 20		GRCh37	INVERSION	44	23	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 with ALK exons 20-29) : c.2243-181:EML4_c.3172+658:ALKinv	yes	unknown	13105444	39513	35871	0	23
P-0015434-T01-IM6	SOMATIC	EML4	ALK	2	2	29448197	42522719	Intron of ALK(-): 130bp after exon 19	Intron of EML4(+): 63bp after exon 12		GRCh37	INVERSION	69	55	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon 13 fused to ALK exon20): c.1489+63:EML4_c.3172+130:ALKinv	yes	unknown	13074522	148081	115267	0	51
P-0005786-T01-IM5	SOMATIC	EML4	ALK	2	2	29448239	42544381	Intron of ALK(-): 88bp after exon 19	Intron of EML4(+): 186bp before exon 18		GRCh37	INVERSION	24	17	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 with ALK exons 20-29) : c.2057-186:EML4_c.3172+88:ALKinv	yes	unknown	13096142	44815	38605	0	17
P-0009301-T01-IM5	SOMATIC	EML4	ALK	2	2	29446651	42501297	Intron of ALK(-): 257bp before exon 20	Intron of EML4(+): 7Kb before exon 6		GRCh37	INVERSION			Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29) : c.668-6693:EML4_c.3173-257:ALKinv			13054646	80233	66966	0	40
P-0006313-T01-IM5	SOMATIC	EML4	ALK	2	2	29447966	42544357	Intron of ALK(-): 361bp after exon 19	Intron of EML4(+): 210bp before exon 18		GRCh37	INVERSION			Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) -ALK (NM_004304) Fusion ( EML4 exons 1 to 18 fused with exons 20 to 29 of ALK )			13096391	59368	55062	0	55
P-0002408-T01-IM3	SOMATIC	EML4	EML4	2	2	29448053	42544452	Intron of ALK(-): 274bp after exon 19	Intron of EML4(+): 115bp before exon 18		GRCh37	INVERSION	54	37	Protein fusion: in frame (EML4-ALK)	PRECISE	3to3	EML4 (NM_019063) and ALK (NM_004304) inversion (13096399bp) :  EML4:c.2057-115_ALK:c.3172+274inv	yes	unknown	13096399	82897	81915	0	36
P-0044432-T01-IM6	SOMATIC	EML4	ALK	2	2	29448344	42543991	Exon 19 of ALK(-)	Intron of EML4(+):575bp before exon 18		GRCh37	INVERSION	10	40	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2057-576:EML4_c.3155:ALKinv	yes	unknown	13095647	95237	98476	0	38
P-0043594-T01-IM6	SOMATIC	EML4	ALK	2	2	29448381	42486142	Exon 19 of ALK(-)	Intron of EML4(+):2Kb after exon 3		GRCh37	INVERSION	10	36	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.339-2119:EML4_c.3118:ALKinv	yes	unknown	13037761	89090	89050	0	36
P-0061297-T02-IM7	SOMATIC	EML4	ALK	2	2	29448375	42523587	Exon 19 of ALK(-)	Intron of EML4(+):931bp after exon 12		GRCh37	INVERSION	5	2	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+931:EML4_c.3124:ALKinv	yes	unknown	13075212	139000	46224	0	2
P-0043363-T01-IM6	SOMATIC	EML4	ALK	2	2	29448101	42553305	Intron of ALK(-):225bp after exon 19	Exon 20 of EML4(+)		GRCh37	INVERSION	10	73	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2254:EML4_c.3172+226:ALKinv	yes	unknown	13105204	101225	111654	0	73
P-0072363-T01-IM7	SOMATIC	EML4	ALK	2	2	29448344	42527844	Exon 19 of ALK(-)	Intron of EML4(+):536bp before exon 13		GRCh37	INVERSION	10	24	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-537:EML4_c.3155:ALKinv	yes	unknown	13079500	109620	149307	0	24
P-0078722-T02-IM7	SOMATIC	EML4	ALK	2	2	29447426	42553376	Intron of ALK(-):900bp after exon 19	Exon 20 of EML4(+)		GRCh37	INVERSION	10	47	Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2325:EML4_c.3172+901:ALKinv	yes	unknown	13105950	131297	100642	0	47
P-0084458-T01-IM7	SOMATIC	EML4	ALK	2	2	29446318	42492574	Exon 20 of ALK(-)	Intron of EML4(+):703bp after exon 5		GRCh37	INVERSION			Protein Fusion: mid-exon  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+703:EML4_c.3249:ALKinv			13046256	138936	139418	0	21
P-0019560-T01-IM6	SOMATIC	EML4	ALK	2	2	29447952	42540223	Intron of ALK(-):374bp after exon 19	Intron of EML4(+):3Kb before exon 17		GRCh37	INVERSION	10	93	Protein Fusion: out of frame  {EML4:ALK}	PRECISE	3to3	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-16 with ALK exons 20-29): c.1968-2879:EML4_c.3172+375:ALKinv	yes	unknown	13092271	131596	92928	0	94
P-0065124-T01-IM7	SOMATIC	ENAM	NOTCH2	4	1	71506002	120509147	Intron of ENAM(+):2Kb before exon 9	Intron of NOTCH2(-):35bp before exon 9		GRCh37	TRANSLOCATION	10	66	Protein Fusion: out of frame  {ENAM:NOTCH2}	PRECISE	3to3	ENAM (NM_031889) - NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q13.3)(chr1:g.120509147::chr4:g.71506002)	yes	unknown	0	0	0	0	66
P-0065940-T01-IM7	SOMATIC	ENPP6	TMPRSS2	21	4	42873641	185022680	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ENPP6(-):4Kb before exon 7		GRCh37	TRANSLOCATION	10	17	Protein Fusion: out of frame  {ENPP6:TMPRSS2}	PRECISE	3to5	ENPP6 (NM_153343) - TMPRSS2 (NM_001135099) rearrangement: t(4;21)(q35.1;q22.3)(chr4:g.185022680::chr21:g.42873641)	yes	unknown	0	0	0	0	18
P-0039112-T01-IM6	SOMATIC	EOGT	GRB7								GRCh37				EOGT-GRB7 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: RAF1-PPP4R2 fusion. Note: The rearrangement is an in-frame fusion between genes RAF1 Exon7 (NM_002880) and  PPP4R2 Exon3 (NM_174907). Note2: As previously detected by MSK-IMPACT, this fusion event does not include the kinase domain of RAF1. EOGT-GRB7 fusion. Note: The rearrangement is an in-frame fusion between genes EOGT Exon1 (NM_173654) and GRB7 Exon11 (NM_005310).	yes	unknown					
P-0020950-T01-IM6	SOMATIC	EP300	EP300	22	22	41560209	41568603	Intron of EP300(+):75bp after exon 22	Exon 28 of EP300(+)		GRCh37	INVERSION	10	67	Antisense Fusion	PRECISE	3to3	EP300 (NM_001429) rearrangement: c.3806+75_c.4553inv	yes	unknown	8394	10673	3563	0	66
P-0075617-T02-IM7	SOMATIC	EP300	EP300	22	22	41567890	41569856	Intron of EP300(+):612bp before exon 28	Intron of EP300(+):68bp after exon 29		GRCh37	INVERSION	0	6	Antisense Fusion	IMPPRECISE	3to3	EP300 (NM_001429) rearrangement: c.4453-613_c.4779+68inv	yes	unknown	1966	1875	1889	0	6
P-0043869-T02-IM6	SOMATIC	EP300	EP300	22	22	41558846	41560705	Intron of EP300(+):63bp after exon 21	Intron of EP300(+):571bp after exon 22		GRCh37	DELETION	10	9	Deletion of 1 exon : in frame	PRECISE	3to5	EP300 (NM_001429) rearrangement: c.3728+63_c.3806+571del	yes	unknown	1859	908	505	0	34
P-0010758-T01-IM5	SOMATIC	EP300	EP300	22	22	41568721	41571185	Intron of EP300(+): 54bp after exon 28	Intron of EP300(+): 1Kb before exon 30		GRCh37	DELETION	32	33	Deletion of 1 exon: in frame	PRECISE	3to5	EP300 (NM_001429) rearrangement: c.4617+54_c.4780-1066del	yes	unknown	2464	2459	1647	0	32
P-0025642-T01-IM6	SOMATIC	EP300	EP300	22	22	41498180	41558606	Intron of EP300(+):9Kb after exon 1	Intron of EP300(+):120bp before exon 21		GRCh37	DELETION	8	6	Deletion of 19 exons : out of frame	PRECISE	3to5	EP300 (NM_001429) Rearrangement : c.94+9078_c.3672-121del	yes	unknown	60426	33236	29952	0	7
P-0035483-T01-IM6	SOMATIC	EP300	EP300	22	22	41551156	41554950	Intron of EP300(+):39bp after exon 17	Intron of EP300(+):446bp after exon 19		GRCh37	DELETION	0	14	Deletion of 2 exons : out of frame	IMPPRECISE	3to5	EP300 (NM_001429) rearrangement: c.3261+39_c.3590+446del	yes	unknown	3794	4400	4812	0	14
P-0060533-T01-IM7	SOMATIC	EP300	EP300	22	22	41531793	41535237	Intron of EP300(+):23bp before exon 7	Intron of EP300(+):906bp before exon 9		GRCh37	DELETION	6	4	Deletion of 2 exons : out of frame	PRECISE	3to5	EP300 (NM_001429) rearrangement: c.1529-24_c.1761-907del	yes	unknown	3444	2820	2442	0	4
P-0016614-T01-IM6	SOMATIC	EP300	EP300	22	22	41533778	41556277	Exon 8 of EP300(+)	Intron of EP300(+):368bp before exon 20		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	EP300 (NM_001429) rearrangement: c.1744_c.3591-369del	yes	unknown	22499	13219	27220	0	6
P-0005888-T01-IM5	SOMATIC	EP300	EP300	22	22	41547737	41564509	Intron of EP300(+): 100bp before exon 15	Exon 24 of EP300(+)		GRCh37	DELETION	79	84	Deletion within transcript: mid-exon	PRECISE	3to5	EP300 (NM_001429)  Rearrangement :  c.2818-100_ 3931del	yes	unknown	16772	15966	11350	0	80
P-0076134-T01-IM7	SOMATIC	EP300	EP300	22	22	41553424	41560651	Intron of EP300(+):12bp after exon 18	Intron of EP300(+):517bp after exon 22		GRCh37	DUPLICATION	10	11	Duplication of 4 exons : out of frame	PRECISE	5to3	EP300 (NM_001429) rearrangement: c.3501+12_c.3806+517dup	yes	unknown	7227	4293	6664	0	11
P-0069710-T01-IM7	SOMATIC	EP300	EP300	22	22	41490477	41513430	Intron of EP300(+):1Kb after exon 1	Exon 2 of EP300(+)		GRCh37	DUPLICATION	10	32	Duplication within transcript : mid-exon	PRECISE	5to3	EP300 (NM_001429) rearrangement: c.94+1375_c.334dup	yes	unknown	22953	1306	2788	0	32
P-0005176-T01-IM5	SOMATIC	EP300	EP300	22	22	41554465	41557993	Exon 19 of EP300(+)	Intron of EP300(+): 734bp before exon 21		GRCh37	DUPLICATION	31	31	Duplication within transcript: mid-exon	PRECISE	5to3	EP300 (NM_001429) rearrangement: c.3551_c.3672-734dup	yes	unknown	3528	775	1259	0	31
P-0047124-T01-IM6	SOMATIC	EP300	UPK3A	22	22	41573173	45672535	Exon 31 of EP300(+)	IGR: 8Kb before UPK3A(+)		GRCh37	DELETION	10	14	EP300-intragenic	PRECISE	3to5	EP300 (NM_001429) rearrangement: c.5458:EP300_chr22:g.45672535del	yes	unknown	4099362	19749	24804	0	14
P-0010497-T01-IM5	SOMATIC	EP300	ZC3H7B	22	22	41537169	41694128	Exon 10 of EP300(+)	IGR: 3Kb before ZC3H7B(+)		GRCh37	DELETION	13	6	EP300-intragenic	PRECISE	3to5	EP300 (NM_001429) rearrangement : c.1996:EP300_chr22:g.41694128del	yes	unknown	156959	52613	43861	0	6
P-0042414-T01-IM6	SOMATIC	EP300	MKI67	22	10	41533827	129928983	Intron of EP300(+):33bp after exon 8	IGR: 34Kb before MKI67(-)		GRCh37	TRANSLOCATION	9	6	EP300-intragenic	PRECISE	3to5	EP300 (NM_001429) rearrangement: t(10;22)(q26.2;q13.2)(chr10:g.129928983::chr22:g.41533827)	yes	unknown	0	0	0	0	5
P-0014894-T01-IM6	SOMATIC	EP300		22	22	41099971	41527558	IGR: 25Kb before MCHR1(+)	Exon 6 of EP300(+)		GRCh37	DELETION			EP300-intragenic	PRECISE	3to5	EP300 (NM_001429) rearrangement: chr22:g.41099971_c.1449del			427587	16127	10900	0	46
P-0026484-T01-IM6	SOMATIC	EP300		22	19	41573283	15895130	Exon 31 of EP300(+)	IGR: 10Kb before OR10H5(+)		GRCh37	TRANSLOCATION			EP300-intragenic	PRECISE	5to3	EP300 (NM_001429) rearrangement: t(19;22)(p13.12;q13.2)(chr19:g.15895130::chr22:g.41573283)			0	0	0	0	22
P-0032336-T01-IM6	SOMATIC	EP300		22	16	41574417	30001065	Exon 31 of EP300(+)	Exon 17 of TAOK2(+)		GRCh37	TRANSLOCATION			EP300-intragenic	PRECISE	5to5	EP300 (NM_001429) Rearrangement: t(16;22)(p11.2;q13.2)(chr16:g.30001065::chr22:g.41574417)			0	0	0	0	101
P-0056931-T01-IM6	SOMATIC	EP300		22	14	41523538	75454051	Exon 4 of EP300(+)	IGR: 16Kb before EIF2B2(+)		GRCh37	TRANSLOCATION			EP300-intragenic	PRECISE	5to5	EP300 (NM_001429) rearrangement: t(14;22)(q24.3;q13.2)(chr14:g.75454051::chr22:g.41523538)			0	0	0	0	124
P-0074288-T01-IM7	SOMATIC	EP300		22	1	41558680	52751756	Intron of EP300(+):46bp before exon 21	Intron of ZFYVE9(+):4Kb after exon 9		GRCh37	TRANSLOCATION			EP300-intragenic	PRECISE	5to5	EP300 (NM_001429) rearrangement: t(1;22)(p32.3;q13.2)(chr1:g.52751756::chr22:g.41558680)			0	0	0	0	7
P-0077103-T01-IM7	SOMATIC	EP300	EIF2AK4	22	15	41560256	40262195	Intron of EP300(+):122bp after exon 22	Intron of EIF2AK4(+):2Kb after exon 9		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {EP300:EIF2AK4}	PRECISE	3to5	EP300 (NM_001429) - EIF2AK4 (NM_001013703) rearrangement: t(15;22)(q15.1;q13.2)(chr15:g.40262195::chr22:g.41560256)	yes	unknown	0	0	0	0	12
P-0070393-T01-IM7	SOMATIC	EP300	OSBP2	22	22	31263674	41489192	Intron of OSBP2(+):3Kb before exon 3	Intron of EP300(+):90bp after exon 1		GRCh37	DUPLICATION	10	11	Protein Fusion: in frame  {EP300:OSBP2}	PRECISE	5to3	EP300 (NM_001429) - OSBP2 (NM_030758) rearrangement: c.94+90:EP300_c.854-2742:OSBP2dup	yes	unknown	10225518	43853	48813	0	13
P-0014591-T01-IM6	SOMATIC	EP300	ETV1	22	7	41562739	14022908	Intron of EP300(+): 69bp after exon 23	Intron of ETV1(-): 3Kb after exon 1		GRCh37	TRANSLOCATION	2	6	Protein fusion: in frame (EP300-ETV1)	PRECISE	3to3	ETV1 (NM_001163147)_EP300 (NM_001429)  rearrangement: t(7;22)(p21.2;q13.2)(chr7:g.14022908::chr22:g.41562739)	yes	unknown	0	0	0	0	6
P-0026774-T01-IM6	SOMATIC	EP300	ACO2	22	22	41574694	41872382	Exon 31 of EP300(+)	Intron of ACO2(+):7Kb after exon 1		GRCh37	DUPLICATION	10	41	Protein Fusion: mid-exon  {ACO2:EP300}	PRECISE	5to3	ACO2 (NM_001098) - EP300 (NM_001429) rearrangement: c.36+7196:ACO2_c.6979:EP300dup	yes	unknown	297688	1916	3159	0	42
P-0072740-T01-IM7	SOMATIC	EP300	RIBC2	22	22	41574674	45827329	Exon 31 of EP300(+)	Intron of RIBC2(+):383bp after exon 6		GRCh37	DELETION	0	40	Protein Fusion: mid-exon  {EP300:RIBC2}	IMPPRECISE	3to5	EP300 (NM_001429) - RIBC2 (NM_015653) rearrangement: c.6959:EP300_c.1054+383:RIBC2del	yes	unknown	4252655	10470	22779	0	42
P-0031737-T01-IM6	SOMATIC	EP300	TEF	22	22	41574365	41791474	Exon 31 of EP300(+)	Intron of TEF(+):274bp before exon 4		GRCh37	DUPLICATION	10	7	Protein Fusion: mid-exon  {TEF:EP300}	PRECISE	5to3	TEF (NM_003216) - EP300 (NM_001429) rearrangement: c.697-275:TEF_c.6650:EP300dup	yes	unknown	217109	5711	6085	0	7
P-0024105-T01-IM6	SOMATIC	EP300	COLQ	22	3	41562715	15513123	Intron of EP300(+):45bp after exon 23	Intron of COLQ(-):1Kb before exon 10		GRCh37	TRANSLOCATION	0	21	Protein Fusion: out of frame  {EP300:COLQ}	IMPPRECISE	3to3	EP300 (NM_001429) - COLQ (NM_005677) rearrangement: t(3;22)(p25.1;q13.2)(chr3:g.15513123::chr22:g.41562715)	yes	unknown	0	0	0	0	21
P-0070646-T01-IM7	SOMATIC	EP300	L3MBTL2	22	22	41565820	41615617	Intron of EP300(+):200bp after exon 26	Intron of L3MBTL2(+):77bp after exon 6		GRCh37	DELETION	8	13	Protein Fusion: out of frame  {EP300:L3MBTL2}	PRECISE	3to5	EP300 (NM_001429) - L3MBTL2 (NM_031488) rearrangement: c.4286+200:EP300_c.718+77:L3MBTL2del	yes	unknown	49797	19586	20209	0	13
P-0076764-T02-IM7	SOMATIC	EP300	LIFR-AS1	22	5	41544018	38600029	Intron of EP300(+):68bp after exon 12	5-UTR of LIFR-AS1(+):71Kb before coding start		GRCh37	TRANSLOCATION	10	83	Transcript Fusion {EP300:LIFR-AS1}	PRECISE	3to5	EP300 (NM_001429) rearrangement: t(5;22)(p13.1;q13.2)(chr5:g.38600029::chr22:g.41544018)	yes	unknown	0	0	0	0	84
P-0075082-T02-IM7	SOMATIC	EPAS1	EPAS1	2	2	46607575	46609014	Exon 12 of EPAS1(+)	Intron of EPAS1(+):99bp before exon 14		GRCh37	DELETION	10	18	Deletion within transcript : mid-exon	PRECISE	3to5	EPAS1 (NM_001430) rearrangement: c.1764_c.2173-100del	yes	unknown	1439	2408	1661	0	18
P-0014435-T01-IM6	SOMATIC	EPAS1	EPAS1	2	2	46607989	46609641	Intron of EPAS1(+): 133bp after exon 12	Exon 15 of EPAS1(+)		GRCh37	DELETION	82	65	Deletion within transcript: mid-exon	PRECISE	3to5	EPAS1 (NM_001430)  rearrangement: c.2045+133_c.2365del	yes	unknown	1652	5087	3410	0	64
P-0074989-T02-IM7	SOMATIC	EPAS1	EPAS1	2	2	39722882	46611573	5-UTR of LOC728730(+):106Kb before coding start	Intron of EPAS1(+):74bp before exon 16		GRCh37	INVERSION	10	33	EPAS1-intragenic	PRECISE	5to5	EPAS1 (NM_001430) rearrangement: c.2462-75:EPAS1_chr2:g.39722882inv	yes	unknown	6888691	33628	72579	0	35
P-0043181-T01-IM6	SOMATIC	EPC1	INHBA	10	7	32575797	41735073	Intron of EPC1(-):27bp before exon 9	Intron of INHBA(-):5Kb after exon 2		GRCh37	TRANSLOCATION	10	24	Protein Fusion: out of frame  {EPC1:INHBA}	PRECISE	5to3	EPC1 (NM_025209) - INHBA (NM_002192) rearrangement: t(7;10)(p14.1;p11.22)(chr7:g.41735073::chr10:g.32575797)	yes	unknown	0	0	0	0	25
P-0054903-T02-IM6	SOMATIC	EPCAM	EPCAM	2	2	6953647	47604090	IGR: 15Kb before NRIR(-)	Intron of EPCAM(+):62bp before exon 5		GRCh37	DELETION	10	41	EPCAM-intragenic	PRECISE	3to5	EPCAM (NM_002354) rearrangement: c.492-63:EPCAM_chr2:g.2:6953647del	yes	unknown	40650443	287907	376553	0	41
P-0019320-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89391241	89411328	Intron of EPHA3(+):1bp after exon 5	Intron of EPHA3(+):20Kb after exon 5		GRCh37	DELETION	10	8	Deletion within intron	PRECISE	3to5	EPHA3 (NM_005233) rearrangement: c.1306+1_c.1306+20088del	yes	unknown	20087	267	132	0	7
P-0028791-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89521701	89523558	Exon 16 of EPHA3(+)	Intron of EPHA3(+):2Kb after exon 16		GRCh37	DELETION	0	26	Deletion within transcript : mid-exon	IMPPRECISE	3to5	EPHA3 (NM_005233) rearrangement: c.2778_c.2846+1789del	yes	unknown	1857	636	701	0	27
P-0077409-T01-IM7	SOMATIC	EPHA3	EPHA3	3	3	89479247	89480308	Intron of EPHA3(+):930bp after exon 12	Exon 13 of EPHA3(+)		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	EPHA3 (NM_005233) rearrangement: c.2136+930_c.2145del	yes	unknown	1061	358	405	0	10
P-0010610-T01-IM5	SOMATIC	EPHA3	EPHA3	3	3	89444103	89444995	Intron of EPHA3(+): 884bp before exon 6	Exon 6 of EPHA3(+)		GRCh37	DELETION	0	21	Deletion within transcript: mid-exon	IMPRECISE	3to5	EPHA3 (NM_005233) rearrangement: c.1307-884_c.1315del	yes	unknown	892	788	717	0	20
P-0005818-T01-IM5	SOMATIC	EPHA3	EPHA3	3	3	89259123	89390930	Exon 3 of EPHA3(+)	Exon 5 of EPHA3(+)		GRCh37	DUPLICATION	11	11	Duplication within transcript: mid-exon	PRECISE	5to3	EPHA3 (NM_005233) Rearrangement :  c.267_996dup	yes	unknown	131807	5719	6697	0	11
P-0039125-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	83384332	89498396	IGR: 1Mb before LINC00971(-)	Exon 14 of EPHA3(+)		GRCh37	INVERSION	8	4	EPHA3-intragenic	PRECISE	5to5	EPHA3 (NM_005233) rearrangement: c.2368:EPHA3_chr3:g.83384332inv	yes	unknown	6114064	26266	26811	0	4
P-0062519-T01-IM7	SOMATIC	EPHA3	PLSCR5	3	3	89521597	146410594	Intron of EPHA3(+):16bp before exon 16	IGR: 107Kb before PLSCR5(-)		GRCh37	INVERSION	10	5	EPHA3-intragenic	PRECISE	5to5	EPHA3 (NM_005233) rearrangement: c.2691-17:EPHA3_chr3:g.146410594inv	yes	unknown	56888997	310973	186114	0	7
P-0022091-T01-IM6	SOMATIC	EPHA3		3	3	39218520	89498448	IGR: 6Kb before XIRP1(-)	Exon 14 of EPHA3(+)		GRCh37	DELETION			EPHA3-intragenic	PRECISE	3to5	EPHA3 (NM_005233) Rearrangement: chr3:g.39218520_c.2420:EPHA3del			50279928	357674	314841	0	8
P-0062318-T01-IM7	SOMATIC	EPHA3		3	3	89468497	164482743	Exon 11 of EPHA3(+)	3-UTR of LINC01324(-):67Kb after coding stop		GRCh37	DELETION			EPHA3-intragenic	PRECISE	3to5	EPHA3 (NM_005233) rearrangement: c.2031:EPHA3_chr3:g.164482743del			75014246	412941	414726	0	25
P-0046178-T03-IM6	SOMATIC	EPHA3	MAP3K13	3	3	89334309	185161077	Intron of EPHA3(+):56Kb before exon 4	Intron of MAP3K13(+):155bp before exon 4		GRCh37	INVERSION			EPHA3-MAP3K13 Fusion	PRECISE	5to5	EPHA3 (NM_005233) - MAP3K13 (NM_004721) rearrangement: c.815-55757:EPHA3_c.660-156:MAP3K13inv			95826768	335884	267659	0	26
P-0031613-T01-IM6	SOMATIC	EPHA3	PIK3CB	3	3	89474639	138402633	Intron of EPHA3(+):4Kb before exon 12	Intron of PIK3CB(-):4bp before exon 16		GRCh37	INVERSION	0	42	Protein Fusion: out of frame  {EPHA3:PIK3CB}	IMPPRECISE	3to3	EPHA3 (NM_005233) - PIK3CB (NM_006219) rearrangement: c.2075-3617:EPHA2_c.2316-4:PIK3CBinv	yes	unknown	48927994	108980	170031	0	42
P-0014014-T01-IM5	SOMATIC	EPHA5	EPHA5	4	4	66526241	66535289	Intron of EPHA5(-): 9Kb after exon 1	Exon 1 of EPHA5(-)		GRCh37	INVERSION	39	14	Antisense fusion	PRECISE	5to5	EPHA5 (NM_004439) rearrangement: c.181+9039_c.172inv	yes	unknown	9048	994	512	0	14
P-0051589-T01-IM6	SOMATIC	EPHA5	SULT1B1	4	4	66535311	70602256	Exon 1 of EPHA5(-)	Intron of SULT1B1(-):2Kb before exon 5		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	5to5	EPHA5 (NM_004439) rearrangement: c.150:EPHA5_chr4:g.70602256inv	yes	unknown	4066945	3310	3739	0	16
P-0062954-T01-IM7	SOMATIC	EPHA5	AMTN	4	4	66468232	71380017	Intron of EPHA5(-):210bp before exon 3	IGR: 4Kb before AMTN(+)		GRCh37	DELETION	10	10	EPHA5-intragenic	PRECISE	3to5	EPHA5 (NM_004439) rearrangement: c.247-210:EPHA5_chr4:g.71380017del	yes	unknown	4911785	13054	22913	0	11
P-0065132-T01-IM7	SOMATIC	EPHA5	EPHA5	12	4	61177499	66280035	IGR: 925Kb before FAM19A2(-)	Exon 7 of EPHA5(-)		GRCh37	TRANSLOCATION	10	8	EPHA5-intragenic	PRECISE	3to5	EPHA5 (NM_004439) rearrangement: t(4;12)(q13.1;q14.1)(chr4:g.66280035::chr12:g.61177499)	yes	unknown	0	0	0	0	8
P-0053129-T01-IM6	SOMATIC	EPHA5		4	4	66233063	74666425	Intron of EPHA5(-):11bp after exon 10	IGR: 36Kb before CXCL6(+)		GRCh37	INVERSION			EPHA5-intragenic	PRECISE	5to5	EPHA5 (NM_004439) rearrangement: c.1924+12:EPHA5_chr4:g.74666425inv			8433362	19859	16398	1	18
P-0050437-T01-IM6	SOMATIC	EPHA7	EPHA7	6	6	93973852	93975022	Intron of EPHA7(-):219bp before exon 9	Intron of EPHA7(-):602bp before exon 8		GRCh37	DELETION	10	6	Deletion of 1 exon : out of frame	PRECISE	3to5	EPHA7 (NM_004440) rearrangement: c.1634-602_c.1743-219del	yes	unknown	1170	1473	253	0	6
P-0056869-T01-IM6	SOMATIC	EPHA7	RNF217	6	6	93967213	125283749	Exon 12 of EPHA7(-)	Exon 1 of RNF217(+)		GRCh37	DELETION	10	5	EPHA7-intragenic	PRECISE	3to5	EPHA7 (NM_004440) rearrangement: c.2139:EPHA7_chr6:g.125283749del	yes	unknown	31316536	300601	182407	0	5
P-0069952-T01-IM7	SOMATIC	EPHA7	SMPDL3A	6	6	93982118	123198126	Exon 6 of EPHA7(-)	IGR: 88Kb before SMPDL3A(+)		GRCh37	DELETION	10	27	EPHA7-intragenic	PRECISE	3to5	EPHA7 (NM_004440) rearrangement: c.1347:EPHA7_chr6:g.123198126del	yes	unknown	29216008	287287	309720	0	27
P-0021702-T01-IM6	SOMATIC	EPHA7		6	6	92924560	94120809	IGR: 586Kb before CASC6(-)	Exon 3 of EPHA7(-)		GRCh37	DELETION			EPHA7-intragenic	PRECISE	3to5	EPHA7 (NM_004440) rearrangement: g.92924560_c.242del			1196249	25859	22641	0	18
P-0048268-T01-IM6	SOMATIC	EPHB1	EPHB1	3	3	134847905	134884825	Intron of EPHB1(+):4Kb before exon 5	Exon 8 of EPHB1(+)		GRCh37	DELETION	5	3	Deletion within transcript : mid-exon	PRECISE	3to5	EPHB1 (NM_004441) rearrangement: c.962-3651_c.1601del	yes	unknown	36920	7005	5617	0	3
P-0077710-T01-IM7	SOMATIC	EPHB1	FH	3	1	134989742	241661245	IGR: 476Kb before EPHB1(+)	Exon 10 of FH(-)		GRCh37	TRANSLOCATION			EPHB1-FH Fusion	PRECISE	3to3	FH (NM_000143) rearrangement: t(1;3)(q43;q22.2)(chr1:g.241661245::chr3:g.134989742)			0	0	0	0	8
P-0038981-T01-IM6	SOMATIC	EPHB1	EPHB1	3	3	134880701	134894863	Intron of EPHB1(+):158bp before exon 7	Intron of EPHB1(+):4Kb before exon 10		GRCh37	INVERSION	10	5	EPHB1-intragenic	PRECISE	5to5	EPHB1 (NM_004441) rearrangement: c.1423-159_c.1760-3839inv	yes	unknown	14162	3458	5508	0	5
P-0039168-T01-IM6	SOMATIC	EPHB1	EPHB1	21	3	17431751	134825587	IGR: 11Kb before MIR99AHG(+)	Intron of EPHB1(+):142bp after exon 4		GRCh37	TRANSLOCATION	10	11	EPHB1-intragenic	PRECISE	3to3	EPHB1 (NM_004441) rearrangement: t(3;21)(q22.2;q21.1)(chr3:g.134825587::chr21:g.17431751)	yes	unknown	0	0	0	0	11
P-0029821-T01-IM6	SOMATIC	EPHX3	BRD4	19	19	15337047	15349607	Promoter of EPHX3(-):682bp from tx start	Exon 19 of BRD4(-)		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {EPHX3:BRD4}	PRECISE	5to3	BRD4 (NM_058243) rearrangement: c.3967:BRD4_chr19:g.15337047dup	yes	unknown	12560	2137	2890	0	4
P-0037901-T01-IM6	SOMATIC	EPS15	NTRK1								GRCh37				EPS15-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: EPS15-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes EPS15 Exon21 (NM_001981) and NTRK1 Exon10 (NM_002529).	yes	unknown					
P-0037901-T01-IM6	SOMATIC	EPS15	NTRK1	1	1	51858813	156844212	Intron of EPS15(-):1Kb after exon 21	Intron of NTRK1(+):20bp after exon 9		GRCh37	INVERSION	10	157	Protein Fusion: in frame  {EPS15:NTRK1}	PRECISE	5to5	EPS15 (NM_001981) - NTRK1 (NM_002529) rearrangement: c.2119+1240:EPS15_c.1195+20:NTRK1inv	yes	unknown	104985399	234520	332731	0	184
P-0063711-T01-IM7	SOMATIC	EPS15	ARID1A	1	1	27098938	51825796	Intron of ARID1A(+):52bp before exon 13	Intron of EPS15(-):1Kb after exon 24		GRCh37	INVERSION	10	25	Protein Fusion: out of frame  {EPS15:ARID1A}	PRECISE	5to5	EPS15 (NM_001981) - ARID1A (NM_006015) rearrangement: c.2544+1047:EPS15_c.3407-53:ARID1Ainv	yes	unknown	24726858	367910	349702	0	26
P-0012260-T01-IM5	SOMATIC	ERBB2	C17orf37	17	17	37883885	37886288	Intron of ERBB2(+): 57bp before exon 27	Intron of C17orf37(-): 159bp after exon 2		GRCh37	DELETION	48	50	Antisense fusion	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: c.3413-57:ERBB2_chr17:g.37886288del	yes	unknown	2403	4174	2768	0	43
P-0010811-T01-IM5	SOMATIC	ERBB2	C17orf37	17	17	37883146	37886757	Exon 25 of ERBB2(+)	5-UTR of C17orf37(-): 9bp before coding start		GRCh37	DELETION	14	7	Antisense fusion	PRECISE	3to5	ERBB2 (NM_004448) rearrangement : c.3049:ERBB2_chr17:g.37886757del	yes	unknown	3611	7368	6784	0	7
P-0016661-T01-IM6	SOMATIC	ERBB2	IKZF3	17	17	37883263	37926016	Intron of ERBB2(+):7bp after exon 25	Intron of IKZF3(-):3Kb before exon 7		GRCh37	DELETION	10	13	Antisense Fusion	PRECISE	3to5	ERBB2 (NM_004448) - IKZF3 (NM_012481) rearrangement: c.3159+7:ERBB2_c.827-3270:IKZF3del	yes	unknown	42753	6391	6031	0	13
P-0053345-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37870616	37872157	Intron of ERBB2(+):922bp before exon 10	Exon 12 of ERBB2(+)		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	ERBB2 (NM_004448) rearrangement: c.1149-923_c.1478inv	yes	unknown	1541	6299	5464	0	10
P-0036127-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883189	37885595	Exon 25 of ERBB2(+)	Promoter of ERBB2(+):29Kb from tx start		GRCh37	DELETION	10	37	Deletion within transcript : mid-exon	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: c.3092_c.*1298del	yes	unknown	2406	7233	6855	0	39
P-0013755-T01-IM5	SOMATIC	ERBB2		17	17	37866490	37925075	Intron of ERBB2(+): 36bp after exon 6	Intron of IKZF3(-): 2Kb before exon 8		GRCh37	DUPLICATION			ERBB2-intragenic	PRECISE	5to3	ERBB2 (NM_004448) Rearrangement :  c.759+36:ERBB2_c.827-2329:IKZF3			58585	56692	65204	0	12
P-0014276-T01-IM6	SOMATIC	ERBB2		17	17	33011152	37880204	IGR: 45Kb after TMEM132E(+)	Exon 19 of ERBB2(+)		GRCh37	DELETION			ERBB2-intragenic	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: chr17:g.33011152_c.2248:ERBB2del			4869052	145735	89878	0	75
P-0018007-T01-IM6	SOMATIC	ERBB2		17	17	37883862	37891043	Intron of ERBB2(+):62bp after exon 26	IGR: 3Kb before GRB7(+)		GRCh37	DELETION			ERBB2-intragenic	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: c.3412+62:ERBB2_chr17:g.37891043del			7181	4462	3784	0	16
P-0018896-T01-IM6	SOMATIC	ERBB2		17	11	37879868	100478828	Exon 18 of ERBB2(+)	IGR: 80Kb before ARHGAP42(+)		GRCh37	TRANSLOCATION			ERBB2-intragenic	PRECISE	5to5	ERBB2 (NM_004448) rearrangement: t(11;17)(q22.1;q12)(chr11:g.100478828::chr17:g.37879868)			0	0	0	0	89
P-0020926-T01-IM6	SOMATIC	ERBB2		17	15	37882881	88160146	Exon 24 of ERBB2(+)	IGR: 40Kb before LINC00052(+)		GRCh37	TRANSLOCATION			ERBB2-intragenic	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: t(15,17)(q25.3,q12)(chr15:g.88160146::chr17:g.37882881)			0	0	0	0	37
P-0022110-T01-IM6	SOMATIC	ERBB2		X	17	30637819	37883536	IGR: 34Kb before GK(+)	Intron of ERBB2(+):11bp before exon 26		GRCh37	TRANSLOCATION			ERBB2-intragenic	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: t(17;X)(q12;p21.2)(chr17:g.37883536::chrX:g.30637819)			0	0	0	0	8
P-0025401-T01-IM6	SOMATIC	ERBB2		17	17	37882980	37884495	Intron of ERBB2(+):68bp after exon 24	3-UTR of ERBB2(+):28Kb after coding stop		GRCh37	DELETION			ERBB2-intragenic	PRECISE	3to5	ERBB2 (NM_004448) rearrangement: c.2970+68:ERBB2_chr17:g.37884495del			1515	9793	9088	0	10
P-0026763-T01-IM6	SOMATIC	ERBB2		17	11	37871727	81026379	Exon 11 of ERBB2(+)	IGR: 564Kb before LOC101928944(-)		GRCh37	TRANSLOCATION			ERBB2-intragenic	PRECISE	5to5	ERBB2 (NM_004448) rearrangement: t(11;17)(q14.1;q12)(chr11:g.81026379::chr17:g.37871727)			0	0	0	0	42
P-0029823-T01-IM6	SOMATIC	ERBB2		17	11	37875982	67137375	Intron of ERBB2(+):57bp before exon 16	Intron of CLCF1(-):2Kb before exon 2		GRCh37	TRANSLOCATION			ERBB2-intragenic	PRECISE	5to3	ERBB2 (NM_004448) rearrangement: t(11;17)(q13.2;q12)(chr11:g.67137375::chr17:g.37875982)			0	0	0	0	69
P-0044793-T01-IM6	SOMATIC	ERBB2		17	17	27068786	37882944	Intron of NEK8(+):190bp before exon 15	Intron of ERBB2(+):32bp after exon 24		GRCh37	INVERSION			ERBB2-intragenic	PRECISE	5to5	ERBB2 (NM_004448) rearrangement: c.2970+32:ERBB2_chr17:g.27068786inv			10814158	183940	159778	0	6
P-0025349-T01-IM6	SOMATIC	ERBB2	MIR4728								GRCh37				ERBB2-MIR4728 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: A rearrangement involving ERBB2 Intron 24 (NM_004448) and MIR4728 (NR_039881) was identified. The functional significance of this event is unknown.  https://www.nature.com/articles/cddis2015116.pdf http://cancerres.aacrjournals.org/content/71/1/78	yes	unknown					
P-0039125-T01-IM6	SOMATIC	ERBB2	CRTC1	19	17	18875517	37882136	Intron of CRTC1(+):696bp before exon 9	Intron of ERBB2(+):30bp after exon 23		GRCh37	TRANSLOCATION	10	36	Protein Fusion: in frame  {ERBB2:CRTC1}	PRECISE	5to3	ERBB2 (NM_004448) - CRTC1 (NM_001098482) rearrangement: t(17;19)(q12;p13.11)(chr17:g.37882136::chr19:g.18875517)	yes	unknown	0	0	0	0	37
P-0033765-T01-IM6	SOMATIC	ERBB2	PLA2G4F	17	15	37881473	42441264	Intron of ERBB2(+):16bp after exon 21	Intron of PLA2G4F(-):646bp after exon 11		GRCh37	TRANSLOCATION	10	10	Protein Fusion: in frame  {ERBB2:PLA2G4F}	PRECISE	3to3	ERBB2 (NM_004448) - PLA2G4F (NM_213600) rearrangement: t(15;17)(q15.1;q12)(chr15:g.42441264::chr17:g.37881473)	yes	unknown	0	0	0	0	10
P-0076064-T01-IM7	SOMATIC	ERBB2	IKZF3	17	17	37881091	38014042	Exon 20 of ERBB2(+)	Intron of IKZF3(-):6Kb after exon 1		GRCh37	INVERSION	10	934	Protein Fusion: mid-exon  {ERBB2:IKZF3}	PRECISE	3to3	ERBB2 (NM_004448) - IKZF3 (NM_012481) rearrangement: c.2420:ERBB2_c.7+6331:IKZF3inv	yes	unknown	132951	8878	300811	0	924
P-0059719-T01-IM7	SOMATIC	ERBB2	PPP1R1B	17	17	37791781	37871609	Intron of PPP1R1B(+):78bp before exon 6	Exon 10 of ERBB2(+)		GRCh37	DUPLICATION	10	63	Protein Fusion: mid-exon  {ERBB2:PPP1R1B}	PRECISE	5to3	ERBB2 (NM_004448) - PPP1R1B (NM_032192) rearrangement: c.1219:ERBB2_c.446-79:PPP1R1Bdup	yes	unknown	79828	38875	537892	0	64
P-0080175-T01-IM7	SOMATIC	ERBB2	PPP1R1B	17	17	37785654	37856560	Intron of PPP1R1B(+):138bp before exon 3	Exon 1 of ERBB2(+)		GRCh37	DUPLICATION	7	3	Protein Fusion: mid-exon  {ERBB2:PPP1R1B}	PRECISE	5to3	ERBB2 (NM_004448) - PPP1R1B (NM_032192) rearrangement: c.69:ERBB2_c.143-139:PPP1R1Bdup	yes	unknown	70906	18816	19871	0	3
P-0002705-T01-IM3	SOMATIC	ERBB2	C1orf87	17	1	37883789	60472564	Exon 26 of ERBB2(+)	Intron of C1orf87(-): 4Kb after exon 9		GRCh37	TRANSLOCATION	29	55	Protein fusion: mid-exon (ERBB2-C1orf87)	PRECISE	3to3		yes	unknown	0	0	0	0	65
P-0001317-T01-IM3	SOMATIC	ERBB2	GRB7	17	17	37883150	37901428	Exon 25 of ERBB2(+)	Intron of GRB7(+): 68bp before exon 10		GRCh37	DELETION	92	63	Protein fusion: mid-exon (ERBB2-GRB7)	PRECISE	3to5		yes	unknown	18278	9711	7913	0	79
P-0031007-T01-IM6	SOMATIC	ERBB2	TNS4	17	17	37866538	38649576	Intron of ERBB2(+):54bp before exon 7	Intron of TNS4(-):3Kb after exon 2		GRCh37	INVERSION			Protein Fusion: out of frame  {ERBB2:TNS4}	PRECISE	3to3	ERBB2 (NM_004448) - TNS4 (NM_032865) rearrangement: c.760-55:ERBB2_c.439+2663:TNS4inv			783038	60340	414359	0	30
P-0009748-T01-IM5	SOMATIC	ERBB2	SHC1	17	1	37883375	154946879	Intron of ERBB2(+): 119bp after exon 25	5-UTR of SHC1(-): 4Kb before coding start		GRCh37	TRANSLOCATION	17	32	Transcript fusion (ERBB2-SHC1)	PRECISE	3to3	ERBB2 (NM_004448) - SHC1 (NM_001130041) rearrangement: t(1;17)(q21.3;q12)(chr1:g.154946879::chr17:g.37883375)	yes	unknown	0	0	0	0	25
P-0025683-T01-IM6	SOMATIC	ERBB2		17	17	37353947	37880265	5-UTR of CACNB1(-):20Kb before coding start	Intron of ERBB2(+):2bp after exon 19		GRCh37	INVERSION			Transcript Fusion {ERBB2:CACNB1}	IMPPRECISE	3to3	ERBB2 (NM_004448) rearrangement: chr17:g.37353947_c.2307+2inv			526318	53455	67619	0	5
P-0027874-T01-IM6	SOMATIC	ERBB3	RPS24	12	10	56494017	79794131	Exon 26 of ERBB3(+)	Intron of RPS24(+):469bp after exon 1		GRCh37	TRANSLOCATION	10	214	Antisense Fusion	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: t(10;12)(q22.3;q13.2)(chr10:g.79794131::chr12:g.56494017)	yes	unknown	0	0	0	0	214
P-0062066-T01-IM7	SOMATIC	ERBB3	ERBB3	12	12	56434902	56478915	Promoter of RPS26(+):783bp from tx start	Exon 3 of ERBB3(+)		GRCh37	INVERSION	8	7	Antisense Fusion	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: c.371:ERBB3_chr12:g.56434902inv	yes	unknown	44013	4849	3870	0	7
P-0069761-T01-IM7	SOMATIC	ERBB3	ZNF664-RFLNA	12	12	56480531	124568467	Intron of ERBB3(+):91bp after exon 4	5-UTR of ZNF664-FAM101A(+):228Kb before coding start		GRCh37	INVERSION	7	4	Antisense Fusion	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: c.547+91:ERBB3_chr12:g.124568467inv	yes	unknown	68087936	303605	462620	0	3
P-0072943-T02-IM7	SOMATIC	ERBB3	ERBB3	12	12	56492755	56494721	Intron of ERBB3(+):66bp after exon 23	Intron of ERBB3(+):123bp before exon 27		GRCh37	INVERSION	10	5	Antisense Fusion	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: c.2839+66_c.3202-124inv	yes	unknown	1966	3650	7142	0	4
P-0041265-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56489009	56498022	Intron of ERBB3(+):31bp before exon 16	Promoter of ERBB3(+):24Kb from tx start		GRCh37	DUPLICATION	10	2	Duplication within transcript	PRECISE	5to3	ERBB3 (NM_001982) rearrangement: c.1860-32:ERBB3_chr12:g.56498022dup	yes	unknown	9013	21206	21471	0	2
P-0038472-T01-IM6	SOMATIC	ERBB3	ERBB3	17	12	50487479	56477717	IGR: 575Kb before C17orf112(+)	Intron of ERBB3(+):31bp after exon 2		GRCh37	TRANSLOCATION	10	97	ERBB3-intragenic	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: t(12;17)(q13.2;q22)(chr12:g.56477717::chr17:g.50487479)	yes	unknown	0	0	0	0	96
P-0046209-T01-IM6	SOMATIC	ERBB3	SLC16A7	12	12	56477678	61084108	Exon 2 of ERBB3(+)	IGR: 1Mb before SLC16A7(+)		GRCh37	INVERSION	10	150	ERBB3-intragenic	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: c.226:ERBB3_chr12:g.61084108inv	yes	unknown	4606430	102093	196321	0	149
P-0048613-T01-IM6	SOMATIC	ERBB3	ERBB3	20	12	19043904	56490271	IGR: 149Kb before SLC24A3(+)	Intron of ERBB3(+):15bp before exon 18		GRCh37	TRANSLOCATION	10	16	ERBB3-intragenic	PRECISE	5to5	ERBB3 (NM_001982) rearrangement: t(12;20)(q13.2;p11.23)(chr12:g.56490271::chr20:g.19043904)	yes	unknown	0	0	0	0	17
P-0032547-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56495769	56496618	Exon 28 of ERBB3(+)	3-UTR of ERBB3(+):23Kb after coding stop		GRCh37	DELETION	0	8	ERBB3-intragenic	IMPPRECISE	3to5	ERBB3 (NM_001982) rearrangement: c.3959:ERBB3_chr12:g.56496618del	yes	unknown	849	596	532	0	18
P-0076379-T01-IM7	SOMATIC	ERBB3	APOF	12	12	56474259	56769012	Intron of ERBB3(+):93bp after exon 1	IGR: 15Kb before APOF(-)		GRCh37	DELETION	5	5	ERBB3-intragenic	PRECISE	3to5	ERBB3 (NM_001982) rearrangement: c.82+93:ERBB3_chr12:g.56769012del	yes	unknown	294753	35290	40836	0	5
P-0024193-T01-IM6	SOMATIC	ERBB3		12	12	56408400	56481371	IGR: 6Kb before IKZF4(+)	Exon 5 of ERBB3(+)		GRCh37	DUPLICATION			ERBB3-intragenic	PRECISE	5to3	ERBB3 (NM_001982) rearrangement: chr12: 56408400 _c.558dup			72971	10210	11444	0	16
P-0030473-T01-IM6	SOMATIC	ERBB3		12	12	54175011	56489595	IGR: 31Kb before CISTR(-)	Intron of ERBB3(+):5bp after exon 17		GRCh37	DUPLICATION			ERBB3-intragenic	PRECISE	5to3	ERBB3 (NM_001982) rearrangement: chr12:g.54175011_c.2055+5dup			2314584	29821	44772	0	66
P-0034685-T01-IM6	SOMATIC	ERBB3		12	9	56491485	140090176	Intron of ERBB3(+):83bp before exon 21	Intron of TPRN(-):3Kb before exon 2		GRCh37	TRANSLOCATION			ERBB3-intragenic	PRECISE	5to3	ERBB3 (NM_001982) Rearrangement :  t(9;12)(q34.3;q13.13)(chr9:g.140090176::chr12:g.56491485)			0	0	0	0	7
P-0042780-T01-IM6	SOMATIC	ERBB3		16	12	11917462	56493955	3-UTR of BCAR4(-):5Kb after coding stop	Intron of ERBB3(+):2bp before exon 26		GRCh37	TRANSLOCATION			ERBB3-intragenic	PRECISE	5to5	ERBB3 (NM_001982) rearrangement: t(12;16)(q13.2;p13.13)(chr12:g.56493955::chr16:g.11917462)			0	0	0	0	39
P-0076648-T02-IM7	SOMATIC	ERBB3		12	12	56482148	62536739	Intron of ERBB3(+):178bp before exon 8	5-UTR of FAM19A2(-):433Kb before coding start		GRCh37	INVERSION			Transcript Fusion {ERBB3:FAM19A2}	PRECISE	3to3	ERBB3 (NM_001982) rearrangement: c.875-179:ERBB3_chr12:g.62536739inv			6054591	191846	232160	0	27
P-0045862-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212568938	212570519	Intron of ERBB4(-):19bp before exon 11	Intron of ERBB4(-):403bp before exon 10		GRCh37	DELETION	5	4	Deletion of 1 exon : out of frame	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.1125-403_c.1199-19del	yes	unknown	1581	797	696	0	4
P-0024844-T01-IM6	SOMATIC	ERBB4		2	2	212285344	212645424	Intron of ERBB4(-):8bp before exon 25	Intron of ERBB4(-):7Kb after exon 4		GRCh37	DELETION			Deletion of 20 exons : out of frame	IMPPRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.556+7326_c.2965-8del			360080	21570	35765	0	62
P-0029409-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212615413	212860363	Exon 5 of ERBB4(-)	Intron of ERBB4(-):48Kb before exon 3		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.573_c.235-48022del	yes	unknown	244950	6012	4022	0	13
P-0088122-T01-IM7	SOMATIC	ERBB4		2	2	212292586	212293152	Intron of ERBB4(-):546bp after exon 22	Exon 22 of ERBB4(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.2700_c.2719+547del			566	362	244	0	31
P-0004860-T01-IM5	SOMATIC	ERBB4	ERBB4	2	2	212589890	212857303	Exon 6 of ERBB4(-)	Intron of ERBB4(-): 45Kb before exon 3		GRCh37	DELETION	37	31	Deletion within transcript: mid-exon	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.235-44962_c.652del	yes	unknown	267413	6420	6679	0	31
P-0009223-T01-IM5	SOMATIC	ERBB4	ERBB4	2	2	212578266	212622479	Exon 8 of ERBB4(-)	Intron of ERBB4(-): 7Kb before exon 5		GRCh37	DELETION	14	7	Deletion within transcript: mid-exon	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.557-7050_c.991del	yes	unknown	44213	6198	5395	0	7
P-0070629-T01-IM7	SOMATIC	ERBB4		2	2	212541612	212544068	Intron of ERBB4(-):2Kb after exon 13	Intron of ERBB4(-):159bp before exon 13		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	ERBB4 (NM_005235) rearrangement: c.1490-159_c.1622+2165dup			2456	1231	1616	0	14
P-0052327-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212587124	212798880	Exon 7 of ERBB4(-)	Intron of ERBB4(-):13Kb after exon 3		GRCh37	DUPLICATION	10	61	Duplication within transcript : mid-exon	PRECISE	5to3	ERBB4 (NM_005235) rearrangement: c.421+13275_c.877dup	yes	unknown	211756	4196	9913	0	63
P-0047996-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	212285262	212322897	Exon 25 of ERBB4(-)	Intron of ERBB4(-):27Kb before exon 21		GRCh37	DUPLICATION	10	54	Duplication within transcript : mid-exon	PRECISE	5to3	ERBB4 (NM_005235) rearrangement: c.2488-27072_c.3039dup	yes	unknown	37635	3983	5823	0	63
P-0067916-T01-IM7	SOMATIC	ERBB4		2	2	212252678	212364006	Exon 26 of ERBB4(-)	Intron of ERBB4(-):63Kb after exon 20		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	ERBB4 (NM_005235) rearrangement: c.2487+62622_c.3175dup			111328	6175	6918	0	55
P-0023464-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212109143	212578165	IGR: 131Kb before ERBB4(-)	Intron of ERBB4(-):94bp after exon 8		GRCh37	DELETION	10	11	ERBB4-intragenic	PRECISE	3to5	ERBB4 (NM_005235) Rearrangement : chr2:g.212109143_c.997+95del	yes	unknown	469022	37651	35225	0	11
P-0077210-T02-IM7	SOMATIC	ERBB4	SCG2	2	2	212652796	224301233	Exon 4 of ERBB4(-)	IGR: 160Kb before SCG2(-)		GRCh37	DELETION	10	21	ERBB4-intragenic	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: c.510:ERBB4_chr2:g.224301233del	yes	unknown	11648437	72595	57173	0	21
P-0086068-T01-IM7	SOMATIC	ERBB4		18	2	54722962	212426673	3-UTR of LINC-ROR(-):16Kb after coding stop	Exon 20 of ERBB4(-)		GRCh37	TRANSLOCATION			ERBB4-intragenic	PRECISE	3to5	ERBB4 (NM_005235) rearrangement: t(2;18)(q34;q21.31)(chr2:g.212426673::chr18:g.54722962)			0	0	0	0	15
P-0050553-T01-IM6	SOMATIC	ERBB4	PLCL1	2	2	198897667	212495070	Intron of PLCL1(+):51Kb before exon 2	Intron of ERBB4(-):116bp after exon 17		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {ERBB4:PLCL1}	PRECISE	5to5	ERBB4 (NM_005235) - PLCL1 (NM_006226) rearrangement: c.2079+117:ERBB4_c.241-50815:PLCL1inv	yes	unknown	13597403	71644	61438	0	23
P-0038256-T01-IM6	SOMATIC	ERC1	RET								GRCh37				ERC1-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ERC1-RET fusion. Note: The rearrangement is an in-frame fusion between genes ERC1 Exon7 (NM_178040) and RET Exon12 (NM_020975).	yes	unknown					
P-0038256-T01-IM6	SOMATIC	ERC1	RET	12	10	1264106	43609964	Intron of ERC1(+):13Kb after exon 7	Exon 11 of RET(+)		GRCh37	TRANSLOCATION	10	99	Protein Fusion: mid-exon  {ERC1:RET}	PRECISE	3to5	ERC1 (NM_178040) - RET (NM_020975) Rearrangement : t(10;12)(q11.1; p13.32)(chr10:g.43609964::chr12:g.1264106)	yes	unknown	0	0	0	0	99
P-0003603-T01-IM5	SOMATIC	ERCC2	ERCC2	19	19	45856513	45863925	Exon 18 of ERCC2(-)	Intron of ERCC2(-): 857bp after exon 11		GRCh37	INVERSION	14	6	Antisense fusion	PRECISE	5to5	c.1237+857_1745inv	yes	unknown	7412	8482	6743	0	6
P-0068700-T01-IM7	SOMATIC	ERCC2	ERCC2	19	19	45867780	45868859	Exon 8 of ERCC2(-)	Intron of ERCC2(-):443bp before exon 6		GRCh37	DELETION	0	12	Deletion within transcript : mid-exon	IMPPRECISE	3to5	ERCC2 (NM_000400) rearrangement: c.361-443_c.620del	yes	unknown	1079	2587	4044	0	12
P-0020476-T01-IM6	SOMATIC	ERCC2	EYA3	19	1	45862055	28413741	Intron of ERCC2(-):1Kb before exon 13	3-UTR of EYA3(-):1Kb after coding stop		GRCh37	TRANSLOCATION	10	51	ERCC2-intragenic	PRECISE	5to5	ERCC2 (NM_000400) Rearrangement : t(1;19)(p35.3; q13.32)(chr1:g.28413741::chr19:g.45862055)	yes	unknown	0	0	0	0	68
P-0077149-T02-IM7	SOMATIC	ERCC2	DBP	19	19	45858188	49135006	Intron of ERCC2(-):79bp before exon 17	Intron of DBP(-):697bp before exon 4		GRCh37	INVERSION	10	42	ERCC2-intragenic	PRECISE	3to3	ERCC2 (NM_000400) rearrangement: c.1544-79:ERCC2_chr19:g.49135006inv	yes	unknown	3276818	68821	108316	0	42
P-0079394-T01-IM7	SOMATIC	ERCC2	ERCC2	19	19	24187643	45860996	IGR: 29Kb before ZNF254(+)	Intron of ERCC2(-):39bp before exon 13		GRCh37	INVERSION	4	2	ERCC2-intragenic	PRECISE	5to5	ERCC2 (NM_000400) rearrangement: c.1238-39:ERCC2_chr19:g.24187643inv	yes	unknown	21673353	340091	242851	0	2
P-0023776-T01-IM6	SOMATIC	ERCC2		19	19	45858062	45933447	Exon 17 of ERCC2(-)	IGR: 17Kb before ERCC1(-)		GRCh37	DELETION			ERCC2-intragenic	PRECISE	3to5	ERCC2 (NM_000400) rearrangement: c.1591_chr19:g.45933447del			75385	18079	9275	0	28
P-0030592-T01-IM6	SOMATIC	ERCC2		19	19	45858145	49195747	Intron of ERCC2(-):36bp before exon 17	IGR: 3Kb before FUT2(+)		GRCh37	DELETION			ERCC2-intragenic	IMPPRECISE	3to5	ERCC2 (NM_000400) Rearrangement: c.1544-36_chr19:g.49195747del			3337602	33400	49939	0	6
P-0010785-T02-IM6	SOMATIC	ERCC2	GIPR	19	19	45856223	46176098	Intron of ERCC2(-):117bp after exon 19	Intron of GIPR(+):10bp before exon 5		GRCh37	INVERSION	0	143	Protein Fusion: in frame  {ERCC2:GIPR}	IMPPRECISE	5to5	ERCC2 (NM_000400) - GIPR (NM_000164) rearrangement: c.1831+118:ERCC2_c.281-11:GIPRinv	yes	unknown	319875	29940	282961	0	163
P-0063163-T02-IM7	SOMATIC	ERCC2	PPP1R13L	19	19	45872217	45881599	Exon 4 of ERCC2(-)	Promoter of PPP1R13L(-):1Kb from tx start		GRCh37	DELETION	10	5	Protein Fusion: mid-exon  {PPP1R13L:ERCC2}	PRECISE	3to5	ERCC2 (NM_000400) rearrangement: c.217:ERCC2_chr19:g.45881599del	yes	unknown	9382	5421	3512	0	5
P-0042656-T01-IM6	SOMATIC	ERCC2	PPP1R13L	19	19	45861032	45903488	Intron of ERCC2(-):75bp before exon 13	5-UTR of PPP1R13L(-):20Kb before coding start		GRCh37	DELETION	10	5	Transcript Fusion {PPP1R13L:ERCC2}	PRECISE	3to5	ERCC2 (NM_000400) rearrangement: c.1238-75:ERCC2_chr19:g.45903488del	yes	unknown	42456	15876	25831	0	5
P-0034560-T01-IM6	SOMATIC	ERCC3	ERCC3	2	2	128014654	128016810	Promoter of ERCC3(-):211bp from tx start	Intron of ERCC3(-):61bp after exon 14		GRCh37	DELETION	0	5	Deletion within transcript	IMPPRECISE	3to5	ERCC3 (NM_000122) rearrangement: c.2217+62_c.*518del	yes	unknown	2156	1856	1832	0	5
P-0032547-T01-IM6	SOMATIC	ERCC4	ERCC4	18	16	333129	14015988	Exon 7 of COLEC12(-)	Exon 2 of ERCC4(+)		GRCh37	TRANSLOCATION	10	26	Antisense Fusion	PRECISE	5to3	ERCC4 (NM_005236) rearrangement: t(16;18)(p13.12;p11.32)(chr16:g.14015988::chr18:g.333129)	yes	unknown	0	0	0	0	26
P-0056185-T01-IM6	SOMATIC	ERCC4	FAM86C2P	16	11	14042125	67515536	Exon 11 of ERCC4(+)	IGR: 44Kb before FAM86C2P(-)		GRCh37	TRANSLOCATION	10	20	ERCC4-intragenic	PRECISE	5to3	ERCC4 (NM_005236) rearrangement: t(11;16)(q13.2;p13.12)(chr11:g.67515536::chr16:g.14042125)	yes	unknown	0	0	0	0	68
P-0072087-T02-IM7	SOMATIC	ERCC4	ERCC4	16	16	14024968	14026183	Intron of ERCC4(+):221bp after exon 5	Intron of ERCC4(+):41bp after exon 6		GRCh37	INVERSION	10	22	ERCC4-intragenic	PRECISE	5to5	ERCC4 (NM_005236) rearrangement: c.973+221_c.1102+41inv	yes	unknown	1215	1085	2152	0	24
P-0013729-T01-IM5	SOMATIC	ERCC4	MYC	16	8	14015306	128753292	Intron of ERCC4(+): 582bp before exon 2	3-UTR of MYC(+): 88bp after coding stop		GRCh37	TRANSLOCATION			ERCC4-MYC Fusion	PRECISE	3to3	ERCC4 (NM_005236) - MYC (NM_002467) rearrangement: t(8;16)(q24.21;p13.12)(chr8:g.128753292::chr16:g.14015306)			0	0	0	0	19
P-0040350-T03-IM6	SOMATIC	ERCC4	RBFOX1	16	16	7664185	14026210	Intron of RBFOX1(+):7Kb after exon 8	Intron of ERCC4(+):68bp after exon 6		GRCh37	DUPLICATION			Protein Fusion: in frame  {ERCC4:RBFOX1}	IMPPRECISE	5to3	ERCC4 (NM_005236) - RBFOX1 (NM_145891) rearrangement: c.1102+68:ERCC4_c.736+6845:RBFOX1dup			6362025	59441	51000	0	5
P-0031135-T01-IM6	SOMATIC	ERCC4	C16orf52	16	16	14024565	22081707	Intron of ERCC4(+):1bp before exon 5	Intron of C16orf52(+):5Kb before exon 2		GRCh37	DUPLICATION	10	7	Protein Fusion: out of frame  {C16orf52:ERCC4}	PRECISE	5to3	C16orf52 (NM_001164579) - ERCC4 (NM_005236) Rearrangement: c.107-5101:C16orf52_c.793-2:ERCC4dup	yes	unknown	8057142	14107	9037	0	7
P-0054920-T01-IM6	SOMATIC	ERCC5	ERCC5	13	13	81634429	103518895	IGR: 42Kb before LINC00377(+)	Intron of ERCC5(+):86bp before exon 11		GRCh37	INVERSION	0	6	ERCC5-intragenic	IMPPRECISE	5to5	ERCC5 (NM_000123) rearrangement: c.2320-87:ERCC5_chr13:g.81634429inv	yes	unknown	21884466	32818	29564	0	6
P-0069595-T01-IM7	SOMATIC	ERCC5	ERCC5	X	13	11979240	103518181	IGR: 177Kb before FRMPD4(+)	Exon 9 of ERCC5(+)		GRCh37	TRANSLOCATION	10	6	ERCC5-intragenic	PRECISE	3to5	ERCC5 (NM_000123) rearrangement: t(X;13)(p22.2;q33.1)(chrX:g.11979240::chr13:g.103518181)	yes	unknown	0	0	0	0	6
P-0008795-T01-IM5	SOMATIC	ERCC5		13	13	80173550	103524596	IGR: 43Kb after NDFIP2(+)	Exon 13 of ERCC5(+)		GRCh37	INVERSION			ERCC5-intragenic	PRECISE	3to3	ERCC5 (NM_000123) rearrangement : chr13:g.80173550_c.2727:ERCC5inv			23351046	62644	131661	0	22
P-0024614-T01-IM6	SOMATIC	ERCC5		13	13	88748664	103528006	IGR: 295Kb before LINC00397(-)	Exon 15 of ERCC5(+)		GRCh37	INVERSION			ERCC5-intragenic	PRECISE	5to5	ERCC5 (NM_000123) rearrangement: c.3314:ERCC5_chr13:g.88748664inv			14779342	25194	43584	0	13
P-0073963-T02-IM7	SOMATIC	ERF	ERF	19	19	42748557	42753590	Promoter of GSK3A(-):14Kb from tx start	Exon 4 of ERF(-)		GRCh37	INVERSION	10	17	ERF-intragenic	PRECISE	3to3	ERF (NM_006494) rearrangement: c.674:ERF_chr19:g.42748557inv	yes	unknown	5033	4405	5927	0	17
P-0055397-T01-IM6	SOMATIC	ERF		19	11	42754179	30272374	Intron of ERF(-):85bp before exon 3	IGR: 20Kb before FSHB(+)		GRCh37	TRANSLOCATION			ERF-intragenic	PRECISE	3to3	ERF (NM_006494) rearrangement: t(11;19)(p14.1;q13.2)(chr11:g.30272374::chr19:g.42754179)			0	0	0	0	16
P-0064171-T01-IM7	SOMATIC	ERF		19	19	32881479	42753698	3-UTR of LOC400684(-):15Kb after coding stop	Exon 4 of ERF(-)		GRCh37	INVERSION			ERF-intragenic	PRECISE	5to5	ERF (NM_006494) rearrangement: c.566:ERF_chr19:g.32881479inv			9872219	260969	271040	0	45
P-0074728-T01-IM7	SOMATIC	ERF	ERF	19	19	42748650	42753856	Promoter of GSK3A(-):14Kb from tx start	Exon 4 of ERF(-)		GRCh37	DELETION	5	3	Protein Fusion: mid-exon  {ERF:GSK3A}	PRECISE	3to5	ERF (NM_006494) rearrangement: c.408:ERF_chr19:g.42748650del	yes	unknown	5206	6117	10010	0	3
P-0006057-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875091	42872619	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	INVERSION	28	10	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Rearrangement: c.40-57547:ERG_c.56-2503:TMPRSS2inv	yes	unknown	2997528	75817	70525	0	10
P-0012322-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40014626	42872731	5-UTR of ERG(-): 67Kb before coding start	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	INVERSION	13	6	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Rearrangement : c.56-2615:TMPRSS2_c.-150+18956:ERGinv	yes	unknown	2858105	65251	64840	0	5
P-0005081-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39853523	42875471	Intron of ERG(-): 17Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	INVERSION	36	12	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Rearrangement :  c.55+4406:TMPRSS2_c.18+16764:ERGinv	yes	unknown	3021948	45340	42028	0	12
P-0025793-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871901	42867090	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):585bp before exon 3		GRCh37	INVERSION	10	56	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-585:TMPRSS2_c.-1597:ERGinv	yes	unknown	2995189	17146	26646	0	59
P-0018791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856547	42873025	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION	10	58	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1 fused to ERG exons 2-10): c.56-2909:TMPRSS2_c.18+13740:ERGdel	yes	unknown	3016478	65138	50060	0	72
P-0028090-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862200	42867146	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):641bp before exon 3		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+8087:ERG_c.127-641:TMPRSS2inv	yes	unknown	3004946	21747	26091	0	56
P-0050541-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872719	42848472	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):31bp after exon 8		GRCh37	INVERSION	10	29	Antisense Fusion	PRECISE	5to5	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-55175:ERG_c.838+32:TMPRSS2inv	yes	unknown	2975753	13031	20861	0	30
P-0052874-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862298	42875273	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+7989:ERG_c.55+4604:TMPRSS2inv	yes	unknown	3012975	66207	37001	0	17
P-0064423-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39841160	42870404	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):288bp before exon 2		GRCh37	INVERSION	10	8	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-23616:ERG_c.56-288:TMPRSS2inv	yes	unknown	3029244	44859	28338	0	8
P-0071164-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39857939	42868112	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	INVERSION	10	5	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+12348:ERG_c.127-1607:TMPRSS2inv	yes	unknown	3010173	29136	25801	0	7
P-0074953-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39936121	42869578	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):467bp after exon 2		GRCh37	INVERSION	10	3	Antisense Fusion	PRECISE	5to5	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+11465:ERG_c.126+468:TMPRSS2inv	yes	unknown	2933457	32991	18843	0	6
P-0077748-T02-IM7	SOMATIC	ERG	TMPRSS2	21	21	39834512	42873514	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION	10	7	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-16968:ERG_c.56-3398:TMPRSS2inv	yes	unknown	3039002	64463	40635	0	7
P-0050086-T01-IM6	SOMATIC	ERG	ERG	21	21	28329679	39870244	Intron of ADAMTS5(-):2Kb before exon 2	Intron of ERG(-):42bp after exon 1		GRCh37	INVERSION	10	12	Antisense Fusion	PRECISE	5to5	ERG (NM_182918) rearrangement: c.18+43:ERG_chr21:g.28329679inv	yes	unknown	11540565	47587	58810	0	15
P-0057842-T01-IM6	SOMATIC	ERG	NDUFV3	21	21	39763725	44343009	Intron of ERG(-):88bp before exon 8	IGR: 30Kb before NDUFV3(+)		GRCh37	DELETION	10	9	ERG-intragenic	PRECISE	3to5	ERG (NM_182918) rearrangement: c.815-88:ERG_chr21:g.44343009del	yes	unknown	4579284	107365	144736	0	9
P-0070382-T02-IM7	SOMATIC	ERG	ERG	21	21	39733134	39739731	IGR: 6Kb before ERG(-)	Intron of ERG(-):161bp before exon 12		GRCh37	INVERSION	5	6	ERG-intragenic	PRECISE	3to3	ERG (NM_182918) rearrangement: chr21:g.39733134_c.941-161inv	yes	unknown	6597	799	1613	0	6
P-0004981-T01-IM5	SOMATIC	ERG		21	12	39755710	130616610	Exon 11 of ERG(-)	IGR: 30Kb before FZD10(+)		GRCh37	TRANSLOCATION			ERG-intragenic	PRECISE	3to3	ERG (NM_182918) rearrangement: t(12;21)(q24.33;q13.1)(chr12:g.130616610::chr21:g.39755710)			0	0	0	0	65
P-0014701-T01-IM6	SOMATIC	ERG		21	21	37828386	39870413	IGR: 5Kb before CLDN14(-)	Intron of ERG(-): 53Kb before exon 4		GRCh37	INVERSION			ERG-intragenic	PRECISE	3to3	ERG (NM_182918) Rearrangement : chr21:g.37828386_c.-109:ERGinv			2042027	37677	38377	0	23
P-0022291-T01-IM6	SOMATIC	ERG		21	8	39755302	56467286	3-UTR of ERG(-):22bp after coding stop	IGR: 106Kb before SBF1P1(-)		GRCh37	TRANSLOCATION			ERG-intragenic	PRECISE	5to5	ERG (NM_182918) rearrangement: t(8;21)(q12.1;q22.2)(chr8:g.56467286::chr21:g.39755302)			0	0	0	0	22
P-0006689-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39849260	42867220	Intron of ERG(-): 21Kb after exon 1	Intron of TMPRSS2(-): 715bp before exon 3		GRCh37	INVERSION			ERG-TMPRSS2 Fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement :  c.40-31716:ERG_c.127-715:TMPRSS2inv			3017960	26481	27321	0	21
P-0012141-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876326	42869787	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 259bp after exon 2		GRCh37	INVERSION			ERG-TMPRSS2 Fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-58782:ERG_c.126+259:TMPRSS2inv			2993461	39065	38915	0	63
P-0046736-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39818120	42870670	Intron of ERG(-):576bp before exon 2	Intron of TMPRSS2(-):554bp before exon 2		GRCh37	INVERSION			ERG-TMPRSS2 Fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-576:ERG_c.56-554:TMPRSS2inv			3052550	41381	29261	0	12
P-0072644-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39877404	42875654	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	INVERSION			ERG-TMPRSS2 Fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-59860:ERG_c.55+4223:TMPRSS2inv			2998250	55106	62669	0	53
P-0082613-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39881621	42874800	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	INVERSION			ERG-TMPRSS2 Fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-64077:ERG_c.56-4684:TMPRSS2inv			2993179	77760	82581	0	24
P-0020750-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39945578	42867090	Intron of ERG(-):2Kb after exon 3	Intron of TMPRSS2(-):585bp before exon 3		GRCh37	DUPLICATION	10	4	Protein Fusion: in frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+2008:ERG_c.127-585:TMPRSS2dup	yes	unknown	2921512	27468	35212	0	16
P-0030086-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823458	42866765	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):260bp before exon 3		GRCh37	DUPLICATION			Protein Fusion: in frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-5914:ERG_c.127-260:TMPRSS2dup			3043307	22405	24686	0	35
P-0021183-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39844672	42869387	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):658bp after exon 2		GRCh37	DELETION	8	3	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+659:TMPRSS2_c.18+25615:ERGdel	yes	unknown	3024715	60564	33562	0	3
P-0022446-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39888600	42868538	Intron of ERG(-):59Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	61	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.126+1508:TMPRSS2_c.39+58986:ERGdel	yes	unknown	2979938	47793	37382	0	75
P-0023621-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39838718	42869564	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):481bp after exon 2		GRCh37	DELETION	10	43	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused to ERG exons 2-10): c.126+482:TMPRSS2_c.19-21174:ERGdel	yes	unknown	3030846	41914	51099	0	44
P-0023605-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874146	42868088	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	0	17	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-10): c.127-1583:TMPRSS2_c.-3842:ERGdel	yes	unknown	2993942	25249	29846	0	18
P-0023663-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834156	42869591	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):454bp after exon 2		GRCh37	DELETION	10	69	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-10): c.126+455:TMPRSS2_c.19-16612:ERGdel	yes	unknown	3035435	41410	38115	0	87
P-0023838-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876787	42867929	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	36	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.127-1424:TMPRSS2_c.40-59243:ERGdel	yes	unknown	2991142	28648	29819	0	41
P-0020847-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834901	42867106	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):601bp before exon 3		GRCh37	DELETION	10	26	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.127-601:TMPRSS2_c.19-17357:ERGdel	yes	unknown	3032205	34617	20988	0	27
P-0025150-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859757	42867731	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	42	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 3-10): c.127-1226:TMPRSS2_c.18+10530:ERGdel	yes	unknown	3007974	28719	18230	0	44
P-0021342-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39895890	42868257	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	58	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.127-1752:TMPRSS2_c.39+51696:ERGdel	yes	unknown	2972367	38867	42589	0	60
P-0021577-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831231	42869477	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):568bp after exon 2		GRCh37	DELETION	10	136	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.126+569:TMPRSS2_c.19-13687:ERGdel	yes	unknown	3038246	41281	37582	0	151
P-0025851-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878297	42869297	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):748bp after exon 2		GRCh37	DELETION	0	24	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	yes	unknown	2991000	29316	34627	0	26
P-0016396-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869161	42869249	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):796bp after exon 2		GRCh37	DELETION	10	75	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.126+797:TMPRSS2_c.18+1126:ERGdel	yes	unknown	3000088	56300	36803	0	79
P-0016983-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39832975	42867872	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	14	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG fusion (NM_182918) fusion (TMPRSS2 exon 1-2 fused to ERG exons 2-10): c.127-1367:TMRPSS2_c.19-15431:ERGdel	yes	unknown	3034897	27215	50154	0	14
P-0017168-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834926	42868343	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	43	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.126+1703:TMPRSS2_c.19-17382:ERGdel	yes	unknown	3033417	45990	31968	0	45
P-0017262-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866100	42868297	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	3	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1749:TMPRSS2_c.18+4187:ERGdel	yes	unknown	3002197	26898	31417	0	19
P-0017312-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862482	42868523	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	45	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 with ERG exon 2) : c.126+1523:TMPRSS2_c.18+7805:ERGdel	yes	unknown	3006041	24842	40573	0	49
P-0018090-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819785	42867125	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):620bp before exon 3		GRCh37	DELETION	10	29	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10):c.127-620:TMPRSS2_c.19-2241:ERGdel	yes	unknown	3047340	19005	30471	0	30
P-0018315-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39851526	42868471	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	69	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1575:TMPRSS2_c.18+18761:ERGdel	yes	unknown	3016945	31591	23506	0	77
P-0018581-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861458	42868059	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	94	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.127-1554:TMPRSS2_c.18+8829:ERGdel	yes	unknown	3006601	21703	23723	0	100
P-0018713-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878175	42867931	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	35	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMRPSS2 exon 1 fused with ERG exons 4-11): c.127-1426:TMPRSS2_c.40-60631:ERGdel	yes	unknown	2989756	24855	35176	0	35
P-0020132-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890646	42867623	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	18	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):c.127-1118:TMPRSS2_c.39+56940:ERGdel	yes	unknown	2976977	38046	24215	0	19
P-0026153-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39893467	42868435	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	96	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 fused to ERG exon4) : c.126+1611:TMPRSS2_c.39+54119:ERGdel	yes	unknown	2974968	33192	34021	0	100
P-0027526-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878354	42869752	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):293bp after exon 2		GRCh37	DELETION	10	39	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449.4) fusion (TMPRSS2 exon 1-2 with ERG exons 4-10) : c.126+294:TMPRSS2_c.40-60810:ERGdel	yes	unknown	2991398	29538	39533	0	41
P-0027635-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39835414	42867959	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	19	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.127-1454:TMPRSS2_c.19-17870:ERGdel	yes	unknown	3032545	34946	29205	0	20
P-0029809-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39907646	42868449	Intron of ERG(-):40Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	18	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1-2 with ERG exons 4-10) : c.126+1597:TMPRSS2_c.39+39940:ERGdel	yes	unknown	2960803	24776	26619	0	19
P-0031536-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857273	42869029	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	15	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1017:TMPRSS2_c.18+13014:ERGdel	yes	unknown	3011756	36361	25582	0	15
P-0033832-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884677	42868279	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	16	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1767:TMPRSS2_c.39+62909:ERGdel	yes	unknown	2983602	32102	24237	0	18
P-0035284-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39881109	42869055	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):990bp after exon 2		GRCh37	DELETION	10	129	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+991:TMPRSS2_c.40-63565:ERGdel	yes	unknown	2987946	31342	43926	0	132
P-0035854-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39936233	42869513	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):532bp after exon 2		GRCh37	DELETION	10	71	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+533:TMPRSS2_c.39+11353:ERGdel	yes	unknown	2933280	40960	37485	0	168
P-0035818-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39833350	42867727	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	0	29	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.127-1222:TMPRSS2_c.19-15806:ERGdel	yes	unknown	3034377	27004	11636	0	31
P-0036120-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39830796	42868693	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	50	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918)  fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+1353:TMPRSS2_c.19-13252:ERGdel	yes	unknown	3037897	38166	9069	0	61
P-0036438-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867517	42867649	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	38	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1144:TMPRSS2_c.18+2770:ERGdel	yes	unknown	3000132	22021	33249	0	38
P-0036294-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866085	42867521	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	62	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -  ERG (NM_182918) fusion: c.127-1016:TMPRSS2_c.18+4202:ERGdel	yes	unknown	3001436	25452	30019	0	65
P-0036699-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876112	42868238	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	9	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1733:TMPRSS2_c.40-58568:ERGdel	yes	unknown	2992126	25663	16708	0	9
P-0001776-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39873309	42869980	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 66bp after exon 2		GRCh37	DUPLICATION	11	6	Protein fusion: in frame (ERG-TMPRSS2)	PRECISE	5to3		yes	unknown	2996671	27994	28888	0	6
P-0011577-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864690	42867016	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 511bp before exon 3		GRCh37	DELETION	23	17	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-511:TMPRSS2_c.40-47146:ERGdel	yes	unknown	3002326	31912	26921	0	17
P-0014202-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39870228	42869590	Intron of ERG(-): 59bp after exon 1	Intron of TMPRSS2(-): 456bp after exon 2		GRCh37	DELETION	22	19	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame to ERG exons 2-10): c.126+456:TMPRSS2_c.18+59:ERGdel	yes	unknown	2999362	47993	42808	0	19
P-0012321-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875961	42868127	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	29	26	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1622:TMPRSS2_c.40-58417:ERGdel	yes	unknown	2992166	43160	37212	0	23
P-0004297-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39871171	42869427	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 619bp after exon 2		GRCh37	DELETION	17	4	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 4-10): c.126+619:TMPRSS2_c.-867:ERGdel	yes	unknown	2998256	30796	46801	0	4
P-0010659-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868208	42867516	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	11	7	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 2-10): c.127-1011:TMPRSS2_c.18+2079:ERGdel	yes	unknown	2999308	33914	29456	0	7
P-0012048-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884663	42869860	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 186bp after exon 2		GRCh37	DELETION	32	21	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.126+186:TMPRSS2_c.39+62923:ERGdel	yes	unknown	2985197	37961	30233	0	22
P-0013733-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867506	42868379	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 2		GRCh37	DELETION	53	35	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1667:TMPRSS2_c.18+2781:ERGdel	yes	unknown	3000873	36956	33420	0	35
P-0013465-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874922	42869204	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 842bp after exon 2		GRCh37	DELETION	35	21	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+842:TMPRSS2_c.40-57378:ERGdel	yes	unknown	2994282	51249	65385	0	11
P-0008812-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39826686	42866528	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 23bp before exon 3		GRCh37	DELETION	80	52	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1-2 with ERG exons 2-10): c.127-23:TMPRSS2_c.19-9142:ERGdel	yes	unknown	3039842	33070	26731	0	50
P-0005756-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39844130	42867719	Intron of ERG(-): 26Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	124	102	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10) : c.127-1214:TMPRSS2_c.18+26157:ERGdel	yes	unknown	3023589	55761	53005	0	143
P-0008525-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862262	42869423	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 623bp after exon 2		GRCh37	DELETION	44	54	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-11) : c.126+623:TMPRSS2_c.18+8025:ERGdel	yes	unknown	3007161	61496	46640	0	52
P-0008591-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883119	42868017	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	24	14	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11) : c.127-1512:TMPRSS2_c.39+64467:ERGdel	yes	unknown	2984898	38946	18121	0	14
P-0003908-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39934598	42867649	Intron of ERG(-): 13Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	14	10	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2933051	33033	24421	0	12
P-0008879-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870075	42869242	Intron of ERG(-): 212bp after exon 1	Intron of TMPRSS2(-): 804bp after exon 2		GRCh37	DELETION	18	11	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+804:TMPRSS2_c.18+212:ERGdel	yes	unknown	2999167	37734	34858	0	11
P-0008441-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39886960	42868117	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	63	100	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1612:TMPRSS2_c.39+60626:ERGdel	yes	unknown	2981157	49145	52600	0	96
P-0006619-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862160	42867571	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	13	10	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-11) : c.127-1066:TMPRSS2_c.40-44616:ERGdel	yes	unknown	3005411	47602	46724	0	10
P-0008139-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39850842	42867120	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 615bp before exon 3		GRCh37	DELETION	27	22	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-11) : c.127-615:TMPRSS2_c.40-33298:ERGdel	yes	unknown	3016278	22811	13781	0	20
P-0002880-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39859355	42867024	Intron of ERG(-): 11Kb after exon 1	Intron of TMPRSS2(-): 519bp before exon 3		GRCh37	DELETION	63	36	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3007669	34177	23831	0	39
P-0000888-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39835338	42868672	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2		GRCh37	DELETION	54	46	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion:  c.126+1374_c.19-17794del	yes	unknown	3033334	41409	29130	0	47
P-0002206-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39865870	42869351	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 695bp after exon 2		GRCh37	DELETION	14	8	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3003481	46802	35875	0	9
P-0003592-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834423	42866560	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 55bp before exon 3		GRCh37	DELETION	33	23	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_001243428) fusion: c.127-55:TMPRSS2_c.40-16879:ERGdel	yes	unknown	3032137	20049	20349	0	26
P-0006108-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862002	42869746	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 300bp after exon 2		GRCh37	DELETION	24	24	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10) : c.126+300:TMPRSS2_c.18+8285:ERGdel	yes	unknown	3007744	61540	52673	0	21
P-0005463-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876650	42868071	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	6	3	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 fused to ERG exon 4) : c.127-1566:TMPRSS2 _c.40-59106:ERGdel	yes	unknown	2991421	31559	29673	0	3
P-0009361-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880684	42867892	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	20	7	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 4-11): c.127-1387:TMPRSS2_c.40-63140:ERGdel	yes	unknown	2987208	35335	34851	0	7
P-0002894-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39879331	42868377	Intron of ERG(-): 62Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 2		GRCh37	DELETION	29	22	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2989046	41086	31046	1	24
P-0002990-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39880577	42869167	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 879bp after exon 2		GRCh37	DELETION	21	11	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2988590	37882	27664	0	13
P-0001845-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39927500	42867131	Intron of ERG(-): 20Kb after exon 3	Intron of TMPRSS2(-): 626bp before exon 3		GRCh37	DELETION	23	16	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (2939631bp):  (TMRPSS2:c.127-626_ERG:c.39+20086del)	yes	unknown	2939631	22163	17721	0	19
P-0012368-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39851683	42869637	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 409bp after exon 2		GRCh37	DELETION	38	53	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918)  fusion (TMPRSS2 exons 1-2  with ERG exons 2-10): c.126+409:TMPRSS2_c.18+18604:ERGdel	yes	unknown	3017954	43759	21166	0	50
P-0007343-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39882799	42869383	Intron of ERG(-): 65Kb after exon 3	Intron of TMPRSS2(-): 663bp after exon 2		GRCh37	DELETION	10	4	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11) : c.126+663:TMPRSS2_c.39+64787:ERGdel	yes	unknown	2986584	36918	40412	0	4
P-0009892-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866427	42867056	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 551bp before exon 3		GRCh37	DELETION	28	54	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 2-10): c.127-551:TMPRSS2_c.18+3860:ERGdel	yes	unknown	3000629	43178	32883	0	53
P-0006602-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39835131	42867072	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 567bp before exon 3		GRCh37	DELETION	24	19	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-11) :c.127-567:TMPRSS2_c.40-17587:ERGdel	yes	unknown	3031941	17172	9455	0	18
P-0003541-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862198	42867573	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	83	63	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_001136154) fusion : c.127-1068:TMPRSS2_c.40-44654:ERGdel	yes	unknown	3005375	29594	26125	0	68
P-0009819-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39869920	42867985	Intron of ERG(-): 367bp after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	15	3	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1480:TMPRSS2_c.40-52376:ERGdel	yes	unknown	2998065	30257	23294	0	3
P-0012132-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867415	42868520	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 2		GRCh37	DELETION	60	49	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1526:TMPRSS2_c.18+2872:ERGdel	yes	unknown	3001105	38576	29903	0	49
P-0003626-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39879241	42867148	Intron of ERG(-): 62Kb before exon 4	Intron of TMPRSS2(-): 643bp before exon 3		GRCh37	DELETION	57	89	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 3 fuses with ERG exons 4-10): c.127-643:ERG_c.40-61697:TMPRSS2del	yes	unknown	2987907	29768	25221	0	95
P-0007770-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39911982	42869589	Intron of ERG(-): 36Kb after exon 3	Intron of TMPRSS2(-): 457bp after exon 2		GRCh37	DELETION	43	59	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion (TMPRSS2 exon 1-2 fused with ERG exons 4-11) : c.126+457:TMPRSS2_c.39+35604:ERGdel	yes	unknown	2957607	69314	53494	0	49
P-0012029-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831291	42868158	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	73	48	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1653:TMPRSS2_c.19-13747:ERGdel	yes	unknown	3036867	37727	28747	0	48
P-0004532-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884321	42869942	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 104bp after exon 2		GRCh37	DELETION	28	11	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2-ERG Fusion (TMPRSS2 exon 2 fused to ERG exon 4) :  c.126+104:TMPRSS2_c.39+63265:ERGdel	yes	unknown	2985621	24853	29182	0	11
P-0007043-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866972	42869028	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 1Kb after exon 2		GRCh37	DELETION	29	46	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 2 fused with ERG exons 2 to 10) :  c.126+1018:TMPRSS2_c.18+3315:ERGdel	yes	unknown	3002056	28776	26288	0	45
P-0008077-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883192	42868270	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	DELETION	23	8	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.127-1765:TMPRSS2_c.39+64394:ERGdel	yes	unknown	2985078	16440	23294	0	8
P-0009374-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870205	42867657	Intron of ERG(-): 82bp after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	60	56	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons1-2 with ERG exon2-10) : c.127-1152:TMPRSS2_c.18+82:ERGdel	yes	unknown	2997452	43466	40944	0	55
P-0015132-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874000	42867130	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 625bp before exon 3		GRCh37	DELETION	26	9	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11):c.127-625:TMPRSS2_c.40-56456:ERGdel	yes	unknown	2993130	28546	22756	0	9
P-0002901-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39866331	42869047	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 999bp after exon 2		GRCh37	DELETION	29	27	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3002716	28803	31924	0	29
P-0064796-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39859529	42838080	Intron of ERG(-):11Kb after exon 1	Exon 14 of TMPRSS2(-)		GRCh37	DUPLICATION	10	24	Protein Fusion: mid-exon  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+10758:ERG_c.1579:TMPRSS2dup	yes	unknown	2978551	6231	16464	0	24
P-0022865-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39817473	42873095	Exon 2 of ERG(-)	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	38	Protein Fusion: mid-exon  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.56-2979:TMPRSS2_c.90:ERGdel	yes	unknown	3055622	81559	35161	0	42
P-0032027-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819092	42866329	Intron of ERG(-):2Kb before exon 2	Exon 3 of TMPRSS2(-)		GRCh37	DELETION	0	124	Protein Fusion: mid-exon  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon3 with ERG exon2) : c.303:TMPRSS2_c.19-1548:ERGdel	yes	unknown	3047237	24700	16365	0	136
P-0001128-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39837782	42870060	Intron of ERG(-): 20Kb before exon 4	Exon 2 of TMPRSS2(-)		GRCh37	DELETION	20	6	Protein fusion: mid-exon (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3032278 bp):  c.112_c.19-20238del	yes	unknown	3032278	29817	26936	0	8
P-0022060-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39817249	42861857	Intron of ERG(-):77bp after exon 2	Intron of TMPRSS2(-):337bp before exon 4		GRCh37	DUPLICATION	0	12	Protein Fusion: out of frame  {ERG:TMPRSS2}	IMPPRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.236+78:ERG_c.350-337:TMPRSS2dup	yes	unknown	3044608	26311	10830	0	18
P-0035506-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834375	42878701	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DUPLICATION	0	7	Protein Fusion: out of frame  {ERG:TMPRSS2}	IMPPRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-16831:ERG_c.55+1176:TMPRSS2dup	yes	unknown	3044326	103595	32091	0	8
P-0051756-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869941	42871205	Intron of ERG(-):345bp after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DUPLICATION	10	90	Protein Fusion: out of frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+346:ERG_c.56-1089:TMPRSS2dup	yes	unknown	3001264	44585	64602	0	97
P-0052718-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39838197	42860588	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):148bp before exon 5		GRCh37	DUPLICATION	10	9	Protein Fusion: out of frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-20653:ERG_c.437-148:TMPRSS2dup	yes	unknown	3022391	28296	30952	0	12
P-0059191-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39868045	42861642	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):122bp before exon 4		GRCh37	DUPLICATION	8	11	Protein Fusion: out of frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+2242:ERG_c.350-122:TMPRSS2dup	yes	unknown	2993597	26255	15933	0	12
P-0077159-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39876039	42860529	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):89bp before exon 5		GRCh37	DUPLICATION	10	9	Protein Fusion: out of frame  {ERG:TMPRSS2}	PRECISE	5to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-58495:ERG_c.437-89:TMPRSS2dup	yes	unknown	2984490	40295	23005	0	10
P-0021239-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880684	42873552	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-3436:TMPRSS2_c.40-63140:ERGdel	yes	unknown	2992868	76456	63145	0	29
P-0021698-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819660	42872583	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	73	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.56-2467:TMPRSS2_c.19-2116:ERGdel	yes	unknown	3052923	84910	53991	0	79
P-0022611-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859154	42873629	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	67	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3513:TMPRSS2_c.18+11133:ERGdel	yes	unknown	3014475	81670	62360	0	69
P-0023067-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866272	42877648	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	0	5	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.55+2229:TMPRSS2_c.18+4015:ERGdel	yes	unknown	3011376	86458	27294	0	7
P-0023270-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880406	42874061	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with exon4) : c.56-3945:TMPRSS2_c.40-62862:ERGdel	yes	unknown	2993655	75136	48502	0	6
P-0023625-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863632	42870536	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):420bp before exon 2		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.-56-420:TMPRSS2_chr21:g.39863632del	yes	unknown	3006904	49436	40384	0	10
P-0023753-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39848732	42872201	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2085:TMPRSS2_:c.18+21555:ERGdel	yes	unknown	3023469	71813	48756	0	20
P-0023839-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39826084	42873109	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 fused with ERG exons 2-10): c.56-2993:TMPRSS2_c.19-8540:ERGdel	yes	unknown	3047025	79340	72849	0	16
P-0024461-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877494	42872210	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	63	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449): c.56-2094:TMPRSS2_:c.40-59950:ERGdel	yes	unknown	2994716	73142	76545	0	69
P-0025044-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39853034	42872368	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	119	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918)  Fusion (TMPRSS2 exon1 fused with ERG exon 2) :  c.56-2252:TMPRSS2_c.18+17253:ERGdel	yes	unknown	3019334	61115	54512	0	133
P-0024903-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858334	42873958	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	26	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -  ERG (NM_004449) Fusion : c.56-3842:TMPRSS2_c.40-40790:ERGdel	yes	unknown	3015624	57011	87777	0	28
P-0025097-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874654	42875596	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	110	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+4281:TMPRSS2_c.40-57110:ERGdel	yes	unknown	3000942	71362	62265	0	116
P-0020812-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884157	42876239	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	180	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) (TMPRSS2 exon 1 fused with ERG exons 4-11): c.55+3638:TMPRSS2_c.39+63429:ERGdel	yes	unknown	2992082	150589	188863	0	198
P-0021853-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876965	42873148	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	51	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exon4) : c.56-3032:TMPRSS2_c.40-59421:ERGdel	yes	unknown	2996183	72434	91971	0	53
P-0022470-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880592	42872773	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	184	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2657:TMPRSS2_c.40-63048:ERGdel	yes	unknown	2992181	52306	115108	0	211
P-0024488-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39931478	42876909	Intron of ERG(-):16Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+2968:TMPRSS2_c.39+16108:ERGdel	yes	unknown	2945431	109844	67974	0	22
P-0025137-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39796417	42869679	Intron of ERG(-):934bp before exon 3	Intron of TMPRSS2(-):366bp after exon 2		GRCh37	DELETION	10	109	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -  ERG (NM_182918) Fusion (TMPRSS2 exon 2 fused with ERG exon 3): c.126+367:TMPRSS2_c.237-934:ERGdel	yes	unknown	3073262	41840	36218	0	119
P-0025455-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868589	42872283	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	56	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.56-2167:TMPRSS2_c.18+1698:ERGdel	yes	unknown	3003694	50895	53673	0	61
P-0025650-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39902555	42872614	Intron of ERG(-):45Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	126	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 3) : c.56-2498:TMPRSS2_c.39+45031:ERGdel	yes	unknown	2970059	59463	89423	0	137
P-0025676-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39927008	42876910	Intron of ERG(-):21Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	44	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.55+2967:TMPRSS2_c.39+20578:ERGdel	yes	unknown	2949902	60022	52131	0	203
P-0025823-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867922	42870362	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):246bp before exon 2		GRCh37	DELETION	10	199	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.56-246:TMPRSS2_c.18+2365:ERGdel	yes	unknown	3002440	36206	95628	0	220
P-0015837-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859543	42871440	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	24	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-1324:TMPSS2_c.18+10744:ERGdel	yes	unknown	3011897	64378	49050	0	26
P-0015850-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39938394	42878843	Intron of ERG(-):9Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 to ERG exon 4): c.55+1034:TMPRSS2_c.39+9192:ERG	yes	unknown	2940449	103415	154582	0	19
P-0015960-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882321	42870232	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):116bp before exon 2		GRCh37	DELETION	10	103	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exon 4): c.56-116:TMPRSS2_c.40-64777:ERG	yes	unknown	2987911	34724	83378	0	124
P-0016087-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885739	42874068	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 4-11) : c.56-3952:TMPRSS2_c.39+61847:ERGdel	yes	unknown	2988329	71591	54697	0	10
P-0016134-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39844066	42870509	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):393bp before exon 2		GRCh37	DELETION	10	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1 with ERG exons 2-10) : c.56-393:TMPRSS2_c.18+26221:ERGdel	yes	unknown	3026443	55063	41540	0	34
P-0016236-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39933922	42872990	Intron of ERG(-):14Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	0	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exon 4): c.56-2874:TMPRSS2_c.39+13664:ERGdel	yes	unknown	2939068	50386	91042	0	16
P-0016698-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860318	42872715	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2599:TMPRSS2_c.18+9969:ERGdel	yes	unknown	3012397	49747	41812	0	10
P-0016733-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823695	42873910	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	66	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG fusion (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3794:TMRPSS2_c.19-6151:ERGdel	yes	unknown	3050215	149415	84629	0	74
P-0016895-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831327	42873673	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10) : c.56-3557:TMPRSS2_c.19-13783:ERGdel	yes	unknown	3042346	63746	104629	0	30
P-0016933-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876438	42875065	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	21	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+4812:TMPRSS2_c.40-58894:ERGdel	yes	unknown	2998627	69608	103316	0	24
P-0017065-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859899	42871083	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):967bp before exon 2		GRCh37	DELETION	10	34	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-967:TMPRSS2_c.40-42355:ERGdel	yes	unknown	3011184	51499	76737	0	37
P-0017235-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885215	42874411	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	40	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1-2 with ERG exon 4-11) : c.56-4295:TMPRSS2_c.39+62371:ERGdel	yes	unknown	2989196	69571	97136	0	44
P-0017245-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39805081	42876604	Intron of ERG(-):10Kb before exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	5	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon3) : c.55+3273:TMPRSS2_c.237-9598:ERGdel	yes	unknown	3071523	71769	78986	0	5
P-0017376-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39879103	42872320	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	36	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-2204:TMPRSS2_c.40-61559:ERGdel	yes	unknown	2993217	59878	77265	0	38
P-0017548-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876142	42872954	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	22	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2838:TMPRSS2_c.40-58598:ERGdel	yes	unknown	2996812	42380	36655	0	23
P-0017730-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39825791	42874582	Intron of ERG(-):8Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-4466:TMPRSS2_c.19-8247:ERGdel	yes	unknown	3048791	92838	66387	0	28
P-0018038-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859266	42873173	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	14	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion : c.56-3057:TMPRSS2_c.18+11021:ERGdel	yes	unknown	3013907	94246	68808	0	15
P-0018149-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874384	42876321	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	13	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 4) : c.55+3556:TMPRSS2_c.40-56840:ERGdel	yes	unknown	3001937	79998	45232	0	14
P-0018704-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39883908	42872458	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	49	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMRPSS2 exon 1 fused with ERG exons 4-11): c.56-2342:TMPRSS2_c.39+63678:ERGdel	yes	unknown	2988550	50685	42871	0	55
P-0018798-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39837165	42872271	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	34	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2155:TMPRSS2_c.19-19621:ERGdel	yes	unknown	3035106	55597	66664	0	35
P-0019212-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39822160	42876132	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	32	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.55+3745:TMPRSS2_c.19-4616:ERGdel	yes	unknown	3053972	99755	76550	0	35
P-0019692-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877975	42878273	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	50	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.55+1604:TMPRSS2_c.40-60431:ERGdel	yes	unknown	3000298	130253	74281	0	52
P-0019695-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878574	42871057	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):941bp before exon 2		GRCh37	DELETION	5	2	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-941:TMPRSS2_c.40-61030:ERGdel	yes	unknown	2992483	74418	38462	0	2
P-0019930-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876869	42870942	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):826bp before exon 2		GRCh37	DELETION	10	93	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-826:TMPRSS2_c.40-59325:ERGdel	yes	unknown	2994073	63273	81406	0	99
P-0019933-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39887565	42874808	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	35	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion ( TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-4692:TMPRSS2_c.39+60021:ERGdel	yes	unknown	2987243	92894	99439	0	36
P-0026196-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884340	42873713	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	19	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	yes	unknown	2989373	61499	59852	0	19
P-0026212-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890829	42873852	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	8	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	yes	unknown	2983023	60356	42147	0	9
P-0026377-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868019	42873555	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exon 2) :c.56-3439:TMPRSS2_c.18+2268:ERGdel	yes	unknown	3005536	53250	49741	0	17
P-0026162-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876407	42872550	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	89	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10): c.56-2434:TMPRSS2_c.40-58863:ERGdel	yes	unknown	2996143	53450	71848	0	96
P-0026768-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39893444	42871129	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	99	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-1013:TMPRSS2_c.39+54142:ERGdel	yes	unknown	2977685	34479	32014	0	104
P-0027272-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39843558	42872586	Intron of ERG(-):26Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	5	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2470_c.19-26014del	yes	unknown	3029028	47447	66265	0	6
P-0028430-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876653	42873954	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	5	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10).	yes	unknown	2997301	51714	61887	0	5
P-0028569-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39906787	42871144	Intron of ERG(-):41Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	77	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 2 fused with ERG exons 4-10): c.56-1028:TMPRSS2_c.39+40799:ERGdel	yes	unknown	2964357	41080	48433	0	83
P-0029105-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39853626	42873116	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	67	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099)  - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3000:TMPRSS2_c.18+16661:ERGdel	yes	unknown	3019490	69427	43842	0	72
P-0029333-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874753	42873997	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	0	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 - ERG exons 4-11):  c.56-3881:TMPRSS2_c.40-57209:ERG	yes	unknown	2999244	47985	71908	0	8
P-0030107-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875000	42874273	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4157:TMPRSS2_c.40-57456:ERGdel	yes	unknown	2999273	58118	59204	0	12
P-0030187-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864991	42874662	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	41	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4546:TMPRSS2_c.18+5296:ERGdel	yes	unknown	3009671	70107	51652	0	44
P-0030261-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39889507	42875512	Intron of ERG(-):58Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	114	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4365:TMPRSS2_c.39+58079:ERGdel	yes	unknown	2986005	62988	58029	0	115
P-0030381-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860560	42876014	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	162	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion : c.55+3863:TMPRSS2_c.18+9727:ERGdel	yes	unknown	3015454	72459	102994	0	168
P-0030580-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868474	42873112	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	62	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2996:TMPRSS2_c.18+1813:ERGdel	yes	unknown	3004638	57466	38664	0	101
P-0030675-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877449	42877973	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	48	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 5-11): c.55+1904:TMPRSS2_c.40-59905:ERGdel	yes	unknown	3000524	67023	57788	0	49
P-0031178-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859211	42874466	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	79	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4350:TMPRSS2_c.18+11076:ERGdel	yes	unknown	3015255	90689	70274	0	90
P-0031429-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863784	42872684	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exon 2-10) :c.56-2568:TMPRSS2_c.40-46240:ERGdel	yes	unknown	3008900	47214	20984	0	12
P-0032046-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876503	42875015	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4862:TMPRSS2_c.40-58959:ERGdel	yes	unknown	2998512	88928	47573	0	4
P-0030465-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823191	42872882	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2766:TMPRSS2_c.19-5647:ERGdel	yes	unknown	3049691	63384	64301	0	17
P-0031269-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831034	42870853	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):737bp before exon 2		GRCh37	DELETION	10	47	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.56-737:TMPRSS2_ c.19-13490:ERGdel	yes	unknown	3039819	52815	51591	0	49
P-0032646-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858526	42872447	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	106	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 fused to ERG exons 2-10): c.56-2331:TMPRSS2_c.18+11761:ERGdel	yes	unknown	3013921	58868	38920	0	115
P-0034384-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863686	42872622	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2506:TMPRSS2_c.18+6601:ERGdel	yes	unknown	3008936	48435	32646	0	9
P-0031374-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876684	42873062	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	77	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2946:TMPRSS2_c.40-59140:ERGdel	yes	unknown	2996378	71613	61699	0	80
P-0032390-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39830479	42872348	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	41	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2232:TMPRSS2_c.19-12935:ERGdel	yes	unknown	3041869	49674	53461	0	42
P-0022782-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861233	42874883	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused in-frame with ERG exons 2-10): c.56-4767:TMRPSS2_c.18+9054:ERGdel	yes	unknown	3013650	99577	62169	0	49
P-0002372-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878470	42872815	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	75	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2699:TMPRSS2_c.40-60926:ERGdel	yes	unknown	2994345	53822	58561	0	82
P-0036176-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856076	42873939	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	53	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3823:TMPRSS2_c.18+14211:ERGdel	yes	unknown	3017863	85881	20320	0	57
P-0036351-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885078	42872264	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG(NM_004449) Fusion (TMPRSS2 exon2 with ERG exon4) : c.56-2148:TMPRSS2_c.39+62508:ERG del	yes	unknown	2987186	56713	31106	0	35
P-0032799-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39886155	42879062	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):814bp after exon 1		GRCh37	DELETION	10	36	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11): c.55+815:TMPRSS2_c.39+61431:ERGdel	yes	unknown	2992907	88158	45739	0	36
P-0034431-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39854689	42872774	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	134	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2658:TMPRSS2_c.18+15598:ERGdel	yes	unknown	3018085	58116	50906	0	144
P-0034813-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39865853	42876420	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3457:TMPRSS2_c.18+4434:ERGdel	yes	unknown	3010567	86145	16134	0	7
P-0034865-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39881222	42874660	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	54	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4544:TMPRSS2_c.40-63678:ERGdel	yes	unknown	2993438	44130	58290	0	59
P-0035221-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39897486	42874805	Intron of ERG(-):50Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4689:TMPRSS2_c.39+50100:ERGdel	yes	unknown	2977319	52824	34197	0	11
P-0035445-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39854421	42874445	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	110	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4329:TMPRSS2_c.18+15866:ERGdel	yes	unknown	3020024	70071	68692	0	120
P-0036756-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821998	42877290	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	44	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2587:TMPRSS2_c.19-4454:ERGdel	yes	unknown	3055292	76001	67402	0	45
P-0036791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869156	42873619	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	41	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3503:TMPRSS2_c.18+1131:ERGdel	yes	unknown	3004463	53849	70100	0	41
P-0034480-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39894045	42871949	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11 ): c.56-1833:TMPRSS2_c.39+53541:ERGdel	yes	unknown	2977904	55208	49889	0	21
P-0012046-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39863339	42872227	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DUPLICATION	44	51	Protein fusion: out of frame (ERG-TMPRSS2)	PRECISE	5to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement : c.40-45795:ERG_c.56-2111:TMPRSS2dup	yes	unknown	3008888	78904	79125	0	51
P-0014992-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864986	42877448	Intron of ERG(-): 5Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	15	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.55+2429:TMPRSS2_c.18+5301:ERGdel	yes	unknown	3012462	94178	99040	0	8
P-0012555-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875095	42875301	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	DELETION	36	39	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4576:TMPRSS2_c.-4791:ERGdel	yes	unknown	3000206	127617	108508	0	37
P-0012328-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39823844	42877085	Intron of ERG(-): 6Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	20	14	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.55+2792:TMPRSS2_c.19-6300:ERGdel	yes	unknown	3053241	115387	114940	0	14
P-0011534-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883253	42877936	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	43	27	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exon 4-11):  c.55+1941:TMPRSS2_c.39+64333:ERGdel	yes	unknown	2994683	120015	113286	0	26
P-0014076-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39845881	42873749	Intron of ERG(-): 24Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	52	65	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3633:TMPRSS2_c.18+24406:ERGdel	yes	unknown	3027868	122818	107617	0	63
P-0013116-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39853523	42872374	Intron of ERG(-): 17Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	61	75	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2258:TMPRSS2_c.18+16764:ERGdel	yes	unknown	3018851	97891	100381	0	74
P-0013372-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39797867	42868312	Intron of ERG(-): 2Kb before exon 5	Intron of TMPRSS2(-): 2Kb after exon 2		GRCh37	DELETION	73	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1734:TMPRSS2_c.237-2384:ERGdel	yes	unknown	3070445	62133	109995	0	186
P-0012741-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872098	42878272	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	28	13	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.55+1605:TMPRSS2_c.40-54554:ERGdel	yes	unknown	3006174	124304	112363	0	13
P-0010953-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39855305	42872263	Intron of ERG(-): 15Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	34	25	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-2147:TMPRSS2_c.40-37761:ERGdel	yes	unknown	3016958	103320	94517	0	24
P-0011156-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39854382	42875503	Intron of ERG(-): 16Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	21	22	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+4374:TMPRSS2_c.18+15905:ERGdel	yes	unknown	3021121	139356	132949	0	20
P-0013336-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831340	42874388	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	98	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2 to 10) : c.56-4272:TMPRSS2_c.19-13796:ERGdel	yes	unknown	3043048	72198	72347	0	119
P-0011364-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876280	42877201	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	31	17	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11) : c.55+2676:TMPRSS2_c.40-58736:ERGdel	yes	unknown	3000921	88661	94678	0	18
P-0013503-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858543	42875717	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	59	57	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+4160:TMPRSS2_c.18+11744:ERGdel	yes	unknown	3017174	116637	92777	0	55
P-0010794-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866982	42870148	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 32bp before exon 2		GRCh37	DELETION	16	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-32:TMPRSS2_c.18+3305:ERGdel	yes	unknown	3003166	35718	28487	0	8
P-0013957-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872154	42875289	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	DELETION	13	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion: c.55+4588:TMPRSS2_c.40-54610:ERGdel	yes	unknown	3003135	48991	91961	0	8
P-0010015-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39861384	42871490	Intron of ERG(-): 9Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	80	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 fused with ERG exons 2-9): c.56-1374:TMPRSS2_c.18+8903:ERGdel	yes	unknown	3010106	102581	68420	0	112
P-0012507-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868024	42872292	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	48	42	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2176:TMPRSS2_c.18+2263:ERGdel	yes	unknown	3004268	73880	70026	0	41
P-0010796-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39838364	42871526	Intron of ERG(-): 21Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	108	101	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-1410:TMPRSS2_c.19-20820:ERGdel	yes	unknown	3033162	73565	48569	0	126
P-0005571-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876352	42877527	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	33	30	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon4) : c.55+2350:TMPRSS2_c.40-58808:ERG	yes	unknown	3001175	65692	29931	0	28
P-0006856-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39830757	42872207	Intron of ERG(-): 13Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	76	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11) :  c.56-2091:TMPRSS2_c.40-13213:ERGdel	yes	unknown	3041450	72629	48153	1	107
P-0006837-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39873621	42876181	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	24	17	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4 to 10) : c.55+3696:TMPRSS2:c.40-56077:ERG_del	yes	unknown	3002560	76043	73566	0	17
P-0008452-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39902226	42872698	Intron of ERG(-): 45Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	57	44	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.56-2582:TMPRSS2_c.39+45360:ERGdel	yes	unknown	2970472	63239	46361	0	42
P-0007366-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39836918	42872445	Intron of ERG(-): 19Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	16	7	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 2 to 10) : c.56-2329:TMPRSS2_c.40-19374:ERGdel	yes	unknown	3035527	54809	41904	0	7
P-0008869-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39825206	42872350	Intron of ERG(-): 8Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	46	42	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exons 2-10) : c.56-2234:TMPRSS2_c.19-7662:ERGdel	yes	unknown	3047144	53835	54454	0	42
P-0009687-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864271	42876697	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	77	68	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+3180:TMPRSS2_c.18+6016:ERGdel	yes	unknown	3012426	85877	121676	0	68
P-0008383-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39871789	42874665	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2		GRCh37	DELETION	29	20	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11) : c.56-4549:TMPRSS2_c.40-54245:ERGdel	yes	unknown	3002876	113311	110453	0	18
P-0005953-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39804588	42876716	Intron of ERG(-): 9Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	72	86	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exons 3 to 10) : c.55+3161:TMPRSS2_c.237-9105:ERGdel	yes	unknown	3072128	138828	143885	0	84
P-0009056-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39857843	42870979	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 863bp before exon 2		GRCh37	DELETION	15	10	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-863:TMPRSS2_c.40-40299:ERGdel	yes	unknown	3013136	81253	74826	0	9
P-0007749-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872199	42875524	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	67	64	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 fused with ERG exons 4 to 10): c.55+4353:TMPRSS2_c.40-54655:ERGdel	yes	unknown	3003325	103952	75118	0	64
P-0009082-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868112	42872956	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	93	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-2840:TMPRSS2_c.40-50568:ERGdel	yes	unknown	3004844	88496	62892	0	115
P-0005454-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39856694	42872059	Intron of ERG(-): 14Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	62	52	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion(TMPRSS2 exon 1 fused to ERG exon2 ) :  c.56-1943:TMPRSS2_c.18+13593:ERGdel	yes	unknown	3015365	80881	53820	0	51
P-0003226-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880933	42874729	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2		GRCh37	DELETION	62	17	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2993796	72959	35714	0	60
P-0000479-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39820000	42872680	Intron of ERG(-): 2Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	12	5	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3052680	29844	24085	0	5
P-0003758-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39902170	42873606	Intron of ERG(-): 45Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	0	5	Protein fusion: out of frame (TMPRSS2-ERG)	IMPRECISE	3to5	c.56-3490:TMPRSS2_c.39+45416:ERGdel	yes	unknown	2971436	64767	80888	0	8
P-0002397-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39800725	42877364	Intron of ERG(-): 5Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	36	17	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion :  c.55+2513:TMPRSS2_c.237-5242:ERGdel	yes	unknown	3076639	62703	52743	0	19
P-0001698-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39842569	42874789	Intron of ERG(-): 25Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2		GRCh37	DELETION	23	9	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3032220  bp):(TMRPSS2:c.56-4673_ERG:c.19-25025del)	yes	unknown	3032220	56586	55983	0	10
P-0003419-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875828	42877994	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	53	28	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	c.40-58284:ERG_c.55+1883:TMPRSS2del	yes	unknown	3002166	137285	145426	0	33
P-0002364-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39926743	42872677	Intron of ERG(-): 21Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	21	6	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2945934	28621	31950	0	6
P-0003602-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39926326	42876381	Intron of ERG(-): 21Kb after exon 3	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	41	39	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	c.55+3496:TMPRSS2_c.39+21260:ERGdel	yes	unknown	2950055	81028	54310	0	40
P-0007359-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39873396	42873736	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	5	3	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 1 to 10) : c.56-3620:TMPRSS2_c.40-55852:ERGdel	yes	unknown	3000340	57789	55757	0	3
P-0008206-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39906086	42870501	Intron of ERG(-): 42Kb after exon 3	Intron of TMPRSS2(-): 385bp before exon 2		GRCh37	DELETION	94	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.56-385:TMPRSS2_c.39+41500:ERGdel	yes	unknown	2964415	78060	71925	0	113
P-0007416-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870315	42875820	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	51	57	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and fused with ERG exons 2 to 10) : c.55+4057:TMPRSS2_c.-11:ERGdel	yes	unknown	3005505	52976	26380	0	54
P-0008542-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39824638	42875567	Intron of ERG(-): 7Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	57	65	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1 fused with ERG exons 2 -10 ) : c.55+4310:TMPRSS2_c.19-7094:ERGdel	yes	unknown	3050929	140381	117897	0	64
P-0005422-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878466	42875709	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	12	9	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2(NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 ERG exon4 ) :  c.55+4168:TMPRSS2_c.40-60922:ERGdel	yes	unknown	2997243	79896	71966	0	9
P-0005864-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39829980	42874935	Intron of ERG(-): 12Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2		GRCh37	DELETION	41	39	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 4-11):  c.56-4819:TMPRSS2_c.19-12436:ERGdel	yes	unknown	3044955	103496	88925	0	38
P-0002375-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39831667	42870585	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 469bp before exon 2		GRCh37	DELETION	16	6	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3038918	38166	11963	0	7
P-0002296-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39867925	42877394	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	16	5	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion :  c.55+2483:TMPRSS2_c.18+2362:ERGdel	yes	unknown	3009469	73851	53978	0	5
P-0001141-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39850233	42878671	Intron of ERG(-): 20Kb after exon 1	Intron of TMPRSS2(-): 1Kb after exon 1		GRCh37	DELETION	39	29	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3028438bp):  (TMRPSS2:c.55+1206_ERG:c.18+20054del)	yes	unknown	3028438	54019	60724	0	31
P-0003971-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39833695	42875798	Intron of ERG(-): 16Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	21	6	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fuses with ERG exons 4-10): c.55+4079:TMPRSS2_c.19-16151:ERGdel	yes	unknown	3042103	39360	45507	0	6
P-0003535-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39886811	42873785	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	93	67	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_001136154) fusion : c.56-3669:TMPRSS2_c.39+60775:ERGdel	yes	unknown	2986974	109880	59048	1	160
P-0008592-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39888464	42877519	Intron of ERG(-): 59Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	24	9	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099 ) - ERG(NM_004449)  Fusion  (TMPRSS2 exon 1 fused with ERG exons 4-11) : c.55+2358:TMPRSS2_c.39+59122:ERGdel	yes	unknown	2989055	101625	97820	0	9
P-0007538-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39828183	42876973	Intron of ERG(-): 11Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION	2	3	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 with ERG exons 2 to 10) : c.55+2904:TMPRSS2_c.19-10639:ERGdel	yes	unknown	3048790	73731	55749	0	3
P-0006840-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39885797	42872258	Intron of ERG(-): 62Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	92	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4 to 10) : c.55+3696:TMPRSS2:c.39+61789:ERG_del	yes	unknown	2986461	88678	72989	0	143
P-0003023-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39859274	42874410	Intron of ERG(-): 11Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	10	6	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3015136	48198	46920	0	7
P-0003052-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875748	42872061	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	29	11	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2996313	42536	33047	0	12
P-0006905-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880373	42871259	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	79	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) reciprocal fusion (TMPRSS exon1 fused with ERG exons 4-11) : c.56-1143:TMPRSS2_c.40-62829:ERGdel	yes	unknown	2990886	77606	68157	0	96
P-0012109-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874244	42875429	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	145	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion  (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+4448:TMPRSS2_c.40-56700:ERGdel	yes	unknown	3001185	123237	68182	0	197
P-0008304-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866434	42871261	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	30	26	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-1145:TMPRSS2_c.40-48890:ERGdel	yes	unknown	3004827	49284	51251	0	26
P-0013858-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39898195	42875533	Intron of ERG(-): 49Kb after exon 3	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	0	15	Protein fusion: out of frame (TMPRSS2-ERG)	IMPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons  4-11) c.55+4344:TMPRSS2_c.39+49391:ERGdel	yes	unknown	2977338	117988	75293	0	14
P-0009006-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867873	42874595	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	16	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-4479:TMPRSS2_c.40-50329:ERGdel	yes	unknown	3006722	41301	48704	0	8
P-0014819-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39849210	42871382	Intron of ERG(-): 21Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	18	16	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (M_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-1266:TMRPSS2_c.18+21077del	yes	unknown	3022172	74992	58612	0	15
P-0004816-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39865199	42873903	Intron of ERG(-): 5Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	30	14	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fuses with ERG exons 2-10): c.56-3787:TMPRSS2_c.39+54953:ERGdel.	yes	unknown	3008704	63440	83554	0	14
P-0006389-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39881711	42873213	Intron of ERG(-): 64Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	5	4	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	ERG (NM_001243432) - TMPRSS2 (NM_001135099) rearrangement : c.40-64167:ERG_c.56-3097:TMPRSS2del	yes	unknown	2991502	52795	56516	0	4
P-0008147-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875566	42874297	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	6	3	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) c.56-4181:TMPRSS2_c.40-58022:ERGdel	yes	unknown	2998731	76796	80380	0	3
P-0009073-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39826049	42873613	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	19	5	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-3497:TMPRSS2_c.40-8505:ERGdel	yes	unknown	3047564	54559	60277	0	5
P-0009077-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39877498	42870787	Intron of ERG(-): 60Kb before exon 4	Intron of TMPRSS2(-): 671bp before exon 2		GRCh37	DELETION	12	5	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-671:TMPRSS2_c.40-59954:ERGdel	yes	unknown	2993289	40572	40408	0	5
P-0005557-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834483	42873926	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	12	4	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-3810:TMPRSS2_c.19-16939:ERGdel	yes	unknown	3039443	70312	65703	0	4
P-0009536-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39904279	42877920	Intron of ERG(-): 43Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	7	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11)   :  c.55+1957:TMPRSS2_c.39+43307:ERGdel	yes	unknown	2973641	108409	91795	0	8
P-0011472-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860707	42872511	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	62	42	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (exon 1 of TMPRSS2 with exons 2-10 of ERG): c.56-2395:TMPRSS2_c.18+9580:ERGdel	yes	unknown	3011804	45382	51971	0	42
P-0000373-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39842043	42874110	Intron of ERG(-): 24Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	10	5	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) c.56-3994_c.19-24499del	yes	unknown	3032067	38749	31048	0	5
P-0002895-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39861416	42871276	Intron of ERG(-): 9Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	24	8	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	3009860	19327	17649	0	12
P-0003597-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858593	42871994	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	56	59	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1878:TMPRSS2_c.18+11694:ERGdel	yes	unknown	3013401	60881	36241	0	66
P-0004285-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860128	42872646	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	22	21	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-2530:TMPRSS2_c.18+10159:ERGdel	yes	unknown	3012518	52320	48473	0	20
P-0005636-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834655	42875116	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	DELETION	38	25	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon2)  :  c.55+4761:TMPRSS2_c.19-17111:ERGdel	yes	unknown	3040461	130488	99081	0	23
P-0009448-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874513	42870786	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 670bp before exon 2		GRCh37	DELETION	0	7	Protein fusion: out of frame (TMPRSS2-ERG)	IMPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exons 4-11)  : c.56-670:TMPRSS2_c.40-56969:ERGdel	yes	unknown	2996273	51870	46321	0	7
P-0012271-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39933914	42872883	Intron of ERG(-): 14Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	49	34	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.56-2767:TMPRSS2_c.39+13672:ERGdel	yes	unknown	2938969	72027	60910	0	32
P-0012375-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875968	42870175	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 59bp before exon 2		GRCh37	DELETION	4	3	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.56-59:TMPRSS2_c.40-58424:ERGdel	yes	unknown	2994207	50294	69601	0	3
P-0012930-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864783	42870218	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 102bp before exon 2		GRCh37	DELETION	71	99	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-102:TMPRSS2_c.18+5504:ERGdel	yes	unknown	3005435	51849	9284	0	95
P-0013401-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39839600	42875769	Intron of ERG(-): 22Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION	88	100	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4108:TMPRSS2_c.19-22056:ERGdel	yes	unknown	3036169	129090	54847	0	105
P-0014425-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821898	42872644	Intron of ERG(-): 4Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	60	61	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-2528:TMPRSS2_c.19-4354:ERGdel	yes	unknown	3050746	61082	65472	0	61
P-0014841-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39886460	42873166	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2		GRCh37	DELETION	61	82	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion (TMPRSS2 exon2 fused to ERG exon 4) : c.56-3050:TMPRSS2_c.39+61126:ERGdel	yes	unknown	2986706	98506	97155	0	71
P-0015209-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857197	42877685	Intron of ERG(-): 13Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1		GRCh37	DELETION	58	55	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 fused to ERG exon2): c.55+2192:TMPRSS2_c.18+13090:ERGdel	yes	unknown	3020488	138475	136393	0	54
P-0015250-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39837892	42874426	Intron of ERG(-): 20Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	71	53	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.56-4310:TMPRSS2_c.19-20348:ERGdel	yes	unknown	3036534	88176	63894	0	53
P-0015628-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863466	42870143	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 27bp before exon 2		GRCh37	DELETION	58	93	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-27:TMPSS2_c.18+6821:ERGdel	yes	unknown	3006677	66035	47894	0	89
P-0015744-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39940431	42871033	Intron of ERG(-): 7Kb after exon 3	Intron of TMPRSS2(-): 917bp before exon 2		GRCh37	DELETION	55	20	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2  exon 1 fused to ERG exons 4-11): c.56-917:TMPRSS2_c.39+7155:ERGdel	yes	unknown	2930602	35702	20716	0	20
P-0008431-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870163	42872096	Intron of ERG(-): 124bp after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	9	9	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-1980:TMPRSS2_c.40-52619:ERGdel	yes	unknown	3001933	77898	70234	0	9
P-0002516-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39877889	42874960	Intron of ERG(-): 60Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2		GRCh37	DELETION	22	9	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5		yes	unknown	2997071	79733	28329	0	9
P-0003511-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39895178	42878695	Intron of ERG(-): 52Kb after exon 3	Intron of TMPRSS2(-): 1Kb after exon 1		GRCh37	DELETION			Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5				2983517	117584	80642	0	43
P-0013038-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884473	42871598	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	INVERSION	61	45	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement:  c.39+63113:ERG_c.56-1482:TMPRSS2inv	yes	unknown	2987125	67974	55974	0	44
P-0015131-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39870460	42868045	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3		GRCh37	INVERSION	21	11	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-52916:ERG_c.127-1540:TMPRSS2inv	yes	unknown	2997585	36627	32501	0	11
P-0016490-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875050	42867669	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	INVERSION	0	5	TMPRSS2-ERG fusion	IMPPRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-57506:ERG_c.127-1164:TMPRSS2inv	yes	unknown	2992619	28799	44397	0	6
P-0036164-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39955445	42872252	3-UTR of ERG(-):78Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	75	TMPRSS2-ERG fusion	PRECISE	3to5	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.-48+1323:ERG_c.56-2136:TMPRSS2del	yes	unknown	2916807	56023	53404	0	79
P-0036560-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39944555	42869154	Intron of ERG(-):3Kb after exon 3	Intron of TMPRSS2(-):891bp after exon 2		GRCh37	INVERSION	10	3	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+3031:ERG_c.126+892:TMPRSS2inv	yes	unknown	2924599	27228	22987	0	3
P-0038417-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882426	42873330	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION	10	18	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-64882:ERG_c.56-3214:TMPRSS2inv	yes	unknown	2990904	79968	68262	0	16
P-0055392-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864660	42874567	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	INVERSION	10	16	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+5627:ERG_c.56-4451:TMPRSS2inv	yes	unknown	3009907	73405	46424	0	15
P-0048791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39840878	42871318	Intron of ERG(-):23Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	INVERSION	10	7	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-23334:ERG_c.56-1202:TMPRSS2inv	yes	unknown	3030440	44279	16298	0	11
P-0060872-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39876850	42873713	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	INVERSION	10	69	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-59306:ERG_c.56-3597:TMPRSS2inv	yes	unknown	2996863	118752	35694	0	70
P-0034897-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874031	42871482	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	INVERSION	10	36	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-56487:ERG_c.56-1366:TMPRSS2inv	yes	unknown	2997451	42374	40626	0	36
P-0043413-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821557	42866733	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):228bp before exon 3		GRCh37	INVERSION	10	29	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-4013:ERG_c.127-228:TMPRSS2inv	yes	unknown	3045176	27846	33317	0	29
P-0062491-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39853135	42875520	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	INVERSION	5	4	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+17152:ERG_c.55+4357:TMPRSS2inv	yes	unknown	3022385	58411	53773	0	4
P-0071021-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39895668	42868301	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	INVERSION	10	58	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+51918:ERG_c.126+1745:TMPRSS2inv	yes	unknown	2972633	29601	36765	0	58
P-0073353-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39864141	42869725	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):320bp after exon 2		GRCh37	INVERSION	10	34	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+6146:ERG_c.126+321:TMPRSS2inv	yes	unknown	3005584	24429	41142	0	33
P-0075699-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39877883	42870163	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):47bp before exon 2		GRCh37	INVERSION	10	15	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-60339:ERG_c.56-47:TMPRSS2inv	yes	unknown	2992280	31266	29274	0	15
P-0078087-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39860299	42867446	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):941bp before exon 3		GRCh37	INVERSION	6	7	TMPRSS2-ERG fusion	PRECISE	3to3	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+9988:ERG_c.127-941:TMPRSS2inv	yes	unknown	3007147	23716	40576	0	7
P-0003519-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39974468	42873990	5-UTR of ERG(-): 27Kb before coding start	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION			Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	c.-149-17599:ERG_c.56-3874:TMPRSS2del			2899522	60627	50100	0	28
P-0012104-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39951033	42869622	5-UTR of ERG(-): 3Kb before coding start	Intron of TMPRSS2(-): 424bp after exon 2		GRCh37	DELETION	20	8	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_001243428) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11): (c.126+879:TMRPSS2_c.40-63033:ERGdel)	yes	unknown	2918589	30812	29387	0	8
P-0012327-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40022882	42871029	5-UTR of ERG(-): 75Kb before coding start	Intron of TMPRSS2(-): 913bp before exon 2		GRCh37	DELETION	35	29	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 2-11) : c.56-913:TMPRSS2_c.-150+10700:ERGdel	yes	unknown	2848147	57455	51410	0	28
P-0004826-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40015403	42871052	5-UTR of ERG(-): 68Kb before coding start	Intron of TMPRSS2(-): 936bp before exon 2		GRCh37	DELETION	0	3	Transcript fusion (TMPRSS2-ERG)	IMPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 2-10) :  c.56-936:TMPRS2_c.-150+18179:ERGdel	yes	unknown	2855649	49853	39800	0	3
P-0006815-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40025577	42875044	5-UTR of ERG(-): 78Kb before coding start	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	DELETION	35	34	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exon 2) :  c.55+4833:TMPRSS2_c.-150+8005:ERGdel	yes	unknown	2849467	46193	49556	0	33
P-0007025-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40029375	42873714	5-UTR of ERG(-): 82Kb before coding start	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	45	49	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 2-11) : c.56-3598:TMPRSS2_c.-150+4207:ERGdel	yes	unknown	2844339	97059	83142	0	46
P-0005768-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	40023500	42871297	5-UTR of ERG(-): 76Kb before coding start	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION	39	20	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused to ERG exons 2-11): c.56-1181:TMPRSS2_c.-150+10082:ERGdel	yes	unknown	2847797	55888	60194	0	20
P-0009002-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40023335	42870306	5-UTR of ERG(-): 76Kb before coding start	Intron of TMPRSS2(-): 190bp before exon 2		GRCh37	DELETION	36	38	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons1-11) : c.56-190:TMPRSS2_c.-150+10247:ERGdel	yes	unknown	2846971	71778	60088	0	36
P-0013837-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39986556	42875045	5-UTR of ERG(-): 39Kb before coding start	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	DELETION	34	42	Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 3-11): c.55+4832:TMPRSS2_c.-149-29687:ERGdel	yes	unknown	2888489	115244	74051	0	42
P-0038044-T01-IM6	SOMATIC	ERG		21	13	39772291	104080776	Intron of ERG(-):204bp after exon 6	Promoter of LINC01309(+):3Kb from tx start		GRCh37	TRANSLOCATION			Transcript Fusion {LINC01309:ERG}	PRECISE	3to3	ERG (NM_182918) rearrangement: t(13;21)(q33.1;q22.2)(chr13:g.104080776::chr21:g.39772291)			0	0	0	0	6
P-0021104-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872989	42866560	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):55bp before exon 3		GRCh37	DELETION	10	30	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.127-55:TMPRSS2_c.40-55445:ERGdel	yes	unknown	2993571	31636	17911	0	30
P-0025332-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872706	42875781	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	96	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+4096:TMPRSS2_c.40-55162:ERGdel	yes	unknown	3003075	69982	67737	0	106
P-0016325-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872831	42868979	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	28	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.126+1067:TMPRSS2_c.40-55287:ERGdel	yes	unknown	2996148	23628	69580	0	28
P-0018395-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871911	42877413	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	35	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2464:TMPRSS2_c.40-54367:ERGdel	yes	unknown	3005502	68841	75421	0	37
P-0028551-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871850	42872253	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	80	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-2137:TMPRSS_c.40-54306:ERGdel	yes	unknown	3000403	66806	109430	0	87
P-0019492-T01-IM6	SOMATIC	ERICH1-AS1	WHSC1L1	8	8	691711	38178592	5-UTR of ERICH1-AS1(+):396Kb before coding start	Exon 8 of WHSC1L1(-)		GRCh37	DELETION	10	11	Antisense Fusion	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: g.691711_c.1807del	yes	unknown	37486881	124250	90857	0	11
P-0063879-T02-IM7	SOMATIC	ERN1	PRKCA								GRCh37				ERN1-PRKCA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ERN1-PRKCA fusion. Note: The rearrangement is an in-frame fusion between genes ERN1 Exon2 (NM_001433) and PRKCA Exon6 (NM_002737). Note1: The functional significance of this fusion is unknown.	yes	unknown					
P-0070319-T01-IH3	SOMATIC	ERN1	BRCA1	17	17	41245375	62197757	Exon 10 of BRCA1(-)	Intron of ERN1(-):10Kb after exon 1		GRCh37	DELETION	9	6	Protein Fusion: mid-exon  {ERN1:BRCA1}	PRECISE	3to5	ERN1 (NM_001433) - BRCA1 (NM_007294) rearrangement: c.54+9579:ERN1_c.2173:BRCA1del	yes	unknown	20952382	260705	220265	0	6
P-0054770-T01-IM6	SOMATIC	ERP44	NR4A3								GRCh37				ERP44-NR4A3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ERP44-NR4A3 fusion. Note: The rearrangement is an in-frame fusion between genes ERP44 Exon4 (NM_015051) and NR4A3 Exon4 (NM_173200). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0074133-T01-IM7	SOMATIC	ERRFI1	ERRFI1	1	1	8028768	8079913	Intron of PARK7(+):636bp before exon 4	5-UTR of ERRFI1(-):7Kb before coding start		GRCh37	DELETION	0	5	Antisense Fusion	IMPPRECISE	3to5	ERRFI1 (NM_018948.3) rearrangement: c.-73-4161:ERRFI1_chr1:g.8028768del	yes	unknown	51145	7854	11758	0	5
P-0019972-T03-IM7	SOMATIC	ERRFI1	ERRFI1	1	1	8073955	8084860	Exon 4 of ERRFI1(-)	5-UTR of ERRFI1(-):12Kb before coding start		GRCh37	DELETION	10	57	Deletion within transcript : mid-exon	PRECISE	3to5	ERRFI1 (NM_018948) rearrangement: c.704:ERRFI1_chr1:g.8084860del	yes	unknown	10905	5371	9225	0	56
P-0037146-T01-IM6	SOMATIC	ERRFI1		1	1	8073292	8081887	Exon 4 of ERRFI1(-)	5-UTR of ERRFI1(-):9Kb before coding start		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	ERRFI1 (NM_018948) Rearrangement : c.-74+4331_c.1367dup			8595	6478	12477	0	40
P-0039226-T01-IM6	SOMATIC	ERRFI1	ERRFI1	3	1	179298806	8074113	Intron of ACTL6A(+):10bp after exon 10	Exon 4 of ERRFI1(-)		GRCh37	TRANSLOCATION	10	10	ERRFI1-intragenic	PRECISE	5to3	ERRFI1 (NM_018948) rearrangement: t(1;3)(p36.23;q26.33)(chr1:g.8074113::chr3:g.179298806)	yes	unknown	0	0	0	0	10
P-0040258-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8060312	8073454	IGR: 11Kb before ERRFI1(-)	Exon 4 of ERRFI1(-)		GRCh37	DELETION	8	3	ERRFI1-intragenic	PRECISE	3to5	ERRFI1 (NM_018948) rearrangement: c.1205:ERRFI1_chr1:g.8060312del	yes	unknown	13142	1199	1677	0	4
P-0006713-T01-IM5	SOMATIC	ERRFI1	ERRFI1	17	1	7619057	8085068	IGR: 4Kb before DNAH2(+)	5-UTR of ERRFI1(-): 9Kb before coding start		GRCh37	TRANSLOCATION	32	94	ERRFI1-intragenic	PRECISE	3to5	ERRFI1 (NM_018948) rearrangement: t(1;17)(p36.23;p13.1)(chr1:g.8085068::chr17:g.7619057)	yes	unknown	0	0	0	0	90
P-0035316-T01-IM6	SOMATIC	ERRFI1		1	1	8073980	12117784	Exon 4 of ERRFI1(-)	IGR: 6Kb before TNFRSF8(+)		GRCh37	DELETION			ERRFI1-intragenic	PRECISE	3to5	ERRFI1 (NM_018948) rearrangement: c.679_chr1:g.12117784del			4043804	132495	195596	0	65
P-0038104-T03-IM6	SOMATIC	ERRFI1	RERE	1	1	8073650	8785863	Exon 4 of ERRFI1(-)	5-UTR of RERE(-):371Kb before coding start		GRCh37	DUPLICATION	10	23	Protein Fusion: mid-exon  {ERRFI1:RERE}	PRECISE	5to3	ERRFI1 (NM_018948) - RERE (NM_001042681) rearrangement: c.1009:ERRFI1_c.-144-69363:REREdup	yes	unknown	712213	6769	9482	2	22
P-0049610-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152032176	152332641	5-UTR of ESR1(+):97Kb before coding start	Intron of ESR1(+):149bp before exon 6		GRCh37	DELETION	10	2	Deletion within transcript	PRECISE	3to5	ESR1 (NM_001122740) rearrangement: c.1097-150:ESR1_chr6:g.152032176del	yes	unknown	300465	9610	8803	0	2
P-0061864-T01-IM7	SOMATIC	ESR1	ESR1	6	6	152129007	152324488	5-UTR of ESR1(+):40bp before coding start	Intron of ESR1(+):8Kb before exon 6		GRCh37	DELETION	10	38	Deletion within transcript	PRECISE	3to5	ESR1 (NM_001122740) rearrangement: c.1097-8303:ESR1_chr6:g.152129007del	yes	unknown	195481	15957	14765	0	37
P-0042975-T01-IM6	SOMATIC	ESR1	AKAP12								GRCh37				ESR1-AKAP12 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-AKAP12 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon7 (NM_001122742) and AKAP12 Exon3 (NM_005100).	yes	unknown					
P-0044193-T01-IM6	SOMATIC	ESR1	AKAP12								GRCh37				ESR1-AKAP12 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-AKAP12 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon5 (NM_001122740) and AKAP12 Exon2 (NM_144497).	yes	unknown					
P-0056249-T02-IM6	SOMATIC	ESR1	ARMT1								GRCh37				ESR1-ARMT1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-ARMT1 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon1 (NM_000125) and ARMT1 Exon2 (NM_024573). ESR1-AKAP12 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon1 (NM_000125) and AKAP12 Exon4 (NM_005100). Note2: This fusion was observed with low frequency.	yes	unknown					
P-0069107-T01-IM7	SOMATIC	ESR1	ARNT2								GRCh37				ESR1-ARNT2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-ARNT2 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon6 (NM_001122742) and ARNT2 Exon9 (NM_014862).	yes	unknown					
P-0037832-T01-IM6	SOMATIC	ESR1	CCDC170								GRCh37				ESR1-CCDC170 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-CCDC170 fusion. Note: The rearrangement is a fusion between genes ESR1 Exon 6 (NM_000125) and CCDC170 Exon2 (NM_025059). This fusion was detected at a low frequency (<1%).	yes	unknown					
P-0037903-T01-IM6	SOMATIC	ESR1	CCDC170								GRCh37				ESR1-CCDC170 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-CCDC170 fusion. Note: The rearrangement is a fusion between genes ESR1 Exon3 (NM_001122742) and CCDC170 Exon3 (NM_025059).	yes	unknown					
P-0056282-T01-IM6	SOMATIC	ESR1	DSG1								GRCh37				ESR1-DSG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-DSG1 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon4 (NM_000125) and DSG1 Exon12 (NM_001942). PMID: 30089255	yes	unknown					
P-0048141-T01-IM6	SOMATIC	ESR1	ESR1	6	6	126953648	152415583	IGR: 293Kb before CENPW(+)	Exon 8 of ESR1(+)		GRCh37	INVERSION	10	39	ESR1-intragenic	PRECISE	5to5	ESR1 (NM_001122740) rearrangement: c.1433:ESR1_chr6:g.126953648inv	yes	unknown	25461935	77159	88359	0	40
P-0060260-T01-IM7	SOMATIC	ESR1	ESR1	6	6	151963457	152265362	IGR: 48Kb before ESR1(+)	Exon 5 of ESR1(+)		GRCh37	DELETION	10	40	ESR1-intragenic	PRECISE	3to5	ESR1 (NM_001122740) rearrangement: c.815:ESR1_chr6:g.151963457del	yes	unknown	301905	11823	14405	0	42
P-0043374-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152373899	152382188	Intron of ESR1(+):8Kb before exon 7	Exon 7 of ESR1(+)		GRCh37	INVERSION	10	55	ESR1-intragenic	PRECISE	5to5	ESR1 (NM_001122740) rearrangement: c.1236-8227_c.1298inv	yes	unknown	8289	374	287	0	62
P-0061028-T02-IM7	SOMATIC	ESR1	ESR1	11	6	113890233	152408298	IGR: 40Kb before ZBTB16(+)	Intron of ESR1(+):7Kb before exon 8		GRCh37	TRANSLOCATION	8	9	ESR1-intragenic	PRECISE	5to3	ESR1 (NM_001122740) rearrangement: t(6;11)(q25.1;q23.2)(chr6:g.152408298::chr11:g.113890233)	yes	unknown	0	0	0	0	9
P-0086862-T01-IM7	SOMATIC	ESR1		6	6	139687776	152283128	IGR: 6Kb before CITED2(-)	Intron of ESR1(+):17Kb after exon 5		GRCh37	DELETION			ESR1-intragenic	PRECISE	3to5	ESR1 (NM_001122740) rearrangement: c.1096+17485:ESR1_chr6:g.139687776del			12595352	58470	92387	0	4
P-0053012-T01-IM6	SOMATIC	ESR1	PLEKHG1								GRCh37				ESR1-PLEKHG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-PLEKHG1 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon4 (NM_000125) and PLEKHG1 Exon14 (NM_001029884).	yes	unknown					
P-0068309-T04-IM7	SOMATIC	ESR1	PLEKHG1								GRCh37				ESR1-PLEKHG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-PLEKHG1 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon2 (NM_000125) and PLEKHG1 Exon3 (NM_001029884). POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 26554309, 19117982	yes	unknown					
P-0061871-T01-IM7	SOMATIC	ESR1	PTPRK								GRCh37				ESR1-PTPRK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-PTPRK fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon6 (NM_000125) and PTPRK Exon8 (NM_001135648).	yes	unknown					
P-0040080-T01-IM6	SOMATIC	ESR1	RMND1								GRCh37				ESR1-RMND1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-RMND1 fusion. Note: The rearrangement is an fusion between genes ESR1 Exon6 (NM_001122742) and RMND1 Exon2 (NM_017909).  PMID:30089255	yes	unknown					
P-0062207-T01-IM7	SOMATIC	ESR1	TCF12								GRCh37				ESR1-TCF12 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-TCF12 fusion. Note: The rearrangement is an in-frame fusion between genes ESR1 Exon4 (NM_000125) and TCF12 Exon6 (NM_207036). FBXO41-ERBB4 fusion. Note: The rearrangement is a fusion between genes FBXO41 Exon1 (5'UTR, NM_001080410) and ERBB4 Exon2 (NM_005235). Note2: The functional significance of this event is unknown. POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:     AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0042002-T01-IM6	SOMATIC	ESR1	TFB1M								GRCh37				ESR1-TFB1M Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ESR1-TFB1M fusion. Note: The rearrangement is a fusion between genes ESR1 Exon5 (NM_000125) and TFB1M Exon2 (NM_016020). PMID: 30089255	yes	unknown					
P-0022933-T01-IM6	SOMATIC	ESR1	PARK2	6	6	152419863	162361306	Intron of ESR1(+):3bp before exon 9	Intron of PARK2(-):33Kb after exon 6		GRCh37	INVERSION	10	7	Protein Fusion: in frame  {ESR1:PARK2}	PRECISE	3to3	ESR1 (NM_001122740) - PARK2 (NM_004562) rearrangement: c.1554-4:ESR1_c.734+33028:PARK2inv	yes	unknown	9941443	71453	136731	0	7
P-0065954-T02-IM7	SOMATIC	ESR1	HECTD2	10	6	93172822	152383817	Intron of HECTD2(+):2Kb after exon 1	Intron of ESR1(+):2Kb after exon 7		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {ESR1:HECTD2}	PRECISE	5to3	ESR1 (NM_001122740) - HECTD2 (NM_182765) rearrangement: t(6;10)(q25.1;q23.32)(chr6:g.152383817::chr10:g.93172822)			0	0	0	0	7
P-0065254-T03-IM7	SOMATIC	ETAA1	ETAA1	9	2	83426721	67630483	IGR: 772Kb before TLE1(-)	Exon 5 of ETAA1(+)		GRCh37	TRANSLOCATION	10	29	ETAA1-intragenic	PRECISE	5to3	ETAA1 (NM_019002) rearrangement: t(2;9)(p24;q21.32)(chr2:g.67630483::chr9:g.83426721)	yes	unknown	0	0	0	0	29
P-0076697-T02-IM7	SOMATIC	ETAA1	ETAA1	2	2	67637070	67681295	Exon 6 of ETAA1(+)	IGR: 57Kb before ETAA1(+)		GRCh37	DELETION	10	9	ETAA1-intragenic	PRECISE	3to5	ETAA1 (NM_019002) rearrangement: c.2681:ETAA1_g.67681295del	yes	unknown	44225	1110	1958	0	9
P-0034306-T01-IM6	SOMATIC	ETFA	YAP1	15	11	76604578	102100479	Promoter of ETFA(-):96Kb from tx start	Exon 9 of YAP1(+)		GRCh37	TRANSLOCATION	10	404	Antisense Fusion	PRECISE	5to3	YAP1 (NM_001130145) rearrangement: t(11;15)(q22.2;q24.3)(chr11:g.102100479::chr15:g.76604578)	yes	unknown	0	0	0	1	599
P-0051643-T01-IM6	SOMATIC	ETV1	ETV1	14	7	38060389	13977115	3-UTR of FOXA1(-):180bp after coding stop	Intron of ETV1(-):2Kb before exon 7		GRCh37	TRANSLOCATION	10	8	ETV1-intragenic	PRECISE	5to5	ETV1 (NM_001163147) rearrangement: t(7;14)(p21.2;q21.1)(chr7:g.13977115::chr14:g.38060389)	yes	unknown	0	0	0	0	8
P-0043811-T01-IM6	SOMATIC	ETV1	ETV1	7	7	13920882	13950818	IGR: 10Kb before ETV1(-)	Intron of ETV1(-):1Kb before exon 9		GRCh37	DELETION	10	22	ETV1-intragenic	PRECISE	3to5	ETV1 (NM_001163147) rearrangement: c.803-1493:ETV1_chr7:g.13920882del	yes	unknown	29936	3153	4919	0	24
P-0069552-T01-IM7	SOMATIC	ETV1	ETV1	7	7	1241496	13978757	IGR: 31Kb before UNCX(+)	Exon 6 of ETV1(-)		GRCh37	DELETION	10	11	ETV1-intragenic	PRECISE	3to5	ETV1 (NM_001163147) rearrangement: c.350:ETV1_chr7:g.1241496del	yes	unknown	12737261	116761	110128	0	11
P-0070747-T01-IM7	SOMATIC	ETV1	ISPD	7	7	14026367	16371509	Intron of ETV1(-):57bp before exon 4	Intron of ISPD(-):23Kb before exon 4		GRCh37	INVERSION	5	3	ETV1-intragenic	PRECISE	3to3	ETV1 (NM_001163147) rearrangement: c.134-57:ETV1_chr7:g.16371509inv	yes	unknown	2345142	4310	7366	0	3
P-0037729-T01-IM6	SOMATIC	ETV1		7	7	6669540	14025715	IGR: 7Kb before ZNF316(+)	Intron of ETV1(-):547bp after exon 4		GRCh37	DELETION			ETV1-intragenic	IMPPRECISE	3to5	ETV1 (NM_001163147) rearrangement: c.181+548:ETV1_chr7:g.6669540del			7356175	20465	28072	0	6
P-0069980-T01-IM7	SOMATIC	ETV1	AGR2	7	7	13975522	16841828	Intron of ETV1(-):1bp before exon 7	5-UTR of AGR2(-):9Kb before coding start		GRCh37	DELETION	10	28	Transcript Fusion {AGR2:ETV1}	PRECISE	3to5	ETV1 (NM_001163147) rearrangement: c.366-1:ETV1_chr7:g.16841828del	yes	unknown	2866306	8336	11021	0	30
P-0047395-T01-IM6	SOMATIC	ETV6	LRP6	12	12	12006673	12275489	Intron of ETV6(+):178bp after exon 4	Intron of LRP6(-):1Kb before exon 23		GRCh37	DELETION	10	54	Antisense Fusion	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.463+178:ETV6_chr12:g.12275489del	yes	unknown	268816	218630	296894	0	56
P-0054615-T01-IM6	SOMATIC	ETV6	KCTD16	12	5	12037145	143717098	Intron of ETV6(+):233bp before exon 6	Intron of KCTD16(+):130Kb after exon 3		GRCh37	TRANSLOCATION	10	42	Antisense Fusion	PRECISE	3to3	ETV6 (NM_001987) rearrangement: t(5;12)(q31.3;p13.2)(chr5:g.143717098::chr12:g.12037145)	yes	unknown	0	0	0	0	41
P-0058226-T01-IM6	SOMATIC	ETV6	CPNE4	12	3	12015345	131718373	Intron of ETV6(+):7Kb before exon 5	Intron of CPNE4(-):38Kb after exon 2		GRCh37	TRANSLOCATION	10	9	Antisense Fusion	PRECISE	3to5	ETV6 (NM_001987) rearrangement: t(3;12)(q22.1;p13.2)(chr3:g.131718373::chr12:g.12015345)	yes	unknown	0	0	0	0	9
P-0069020-T01-IM7	SOMATIC	ETV6	GRIN2B	12	12	12010167	13727669	Intron of ETV6(+):4Kb after exon 4	Intron of GRIN2B(-):3Kb before exon 10		GRCh37	DELETION	6	3	Antisense Fusion	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.463+3672:ETV6_chr12:g.13727669del	yes	unknown	1717502	159140	60332	0	3
P-0078623-T01-IM7	SOMATIC	ETV6	DUSP16	12	12	12007808	12665852	Intron of ETV6(+):1Kb after exon 4	Intron of DUSP16(-):7Kb after exon 3		GRCh37	DELETION	10	10	Antisense Fusion	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.463+1313:ETV6_chr12:g.12665852del	yes	unknown	658044	70793	133900	0	10
P-0028989-T01-IM6	SOMATIC	ETV6		12	11	12014281	11366394	Intron of ETV6(+):8Kb after exon 4	Intron of GALNT18(-):4Kb before exon 7		GRCh37	TRANSLOCATION			Antisense Fusion	IMPPRECISE	3to5	ETV6 (NM_001987) rearrangement: t(11;12)(p15.3;p13.2)(chr11:g.11366394::chr12:g.12014281).			0	0	0	0	142
P-0003665-T01-IM5	SOMATIC	ETV6	BCL2L14	12	12	12014898	12175381	Intron of ETV6(+): 7Kb before exon 5	IGR: 48Kb before BCL2L14(+)		GRCh37	INVERSION			c.464-7460 Fusion	PRECISE	5to5	c.464-7460:ETV6_chr12:g.12175381inv			160483	130597	120760	0	47
P-0031651-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12003438	12007884	Intron of ETV6(+):3Kb before exon 4	Intron of ETV6(+):1Kb after exon 4		GRCh37	DELETION	10	18	Deletion of 1 exon : in frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.329-2923_c.463+1389del	yes	unknown	4446	7713	10724	0	19
P-0064608-T02-IM7	SOMATIC	ETV6	ETV6	12	12	12005406	12013604	Intron of ETV6(+):954bp before exon 4	Intron of ETV6(+):7Kb after exon 4		GRCh37	DELETION	10	33	Deletion of 1 exon : in frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.329-955_c.463+7109del	yes	unknown	8198	27952	13167	0	37
P-0042577-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12029530	12037984	Intron of ETV6(+):7Kb after exon 5	Intron of ETV6(+):463bp after exon 6		GRCh37	DELETION	8	3	Deletion of 1 exon : out of frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.1009+6627_c.1152+463del	yes	unknown	8454	61520	68332	0	3
P-0028149-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11941407	12015551	Intron of ETV6(+):36Kb after exon 2	Intron of ETV6(+):7Kb before exon 5		GRCh37	DELETION	10	32	Deletion of 2 exons : in frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.163+35894_c.464-6807del	yes	unknown	74144	57903	41994	0	32
P-0029819-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11982611	12009486	Intron of ETV6(+):9Kb before exon 3	Intron of ETV6(+):3Kb after exon 4		GRCh37	DELETION	10	24	Deletion of 2 exons : in frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.164-9463_c.463+2991del	yes	unknown	26875	17277	21403	0	25
P-0026989-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11858920	12017474	Intron of ETV6(+):46Kb before exon 2	Intron of ETV6(+):5Kb before exon 5		GRCh37	DELETION	10	55	Deletion of 3 exons : out of frame	PRECISE	3to5	ETV6 rearrangement: c.34-46464_c.464-4884del	yes	unknown	158554	76967	80588	0	60
P-0021794-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11847557	12020473	Intron of ETV6(+):44Kb after exon 1	Intron of ETV6(+):2Kb before exon 5		GRCh37	DELETION	0	10	Deletion of 3 exons : out of frame	IMPPRECISE	3to5	ETV6 (NM_001987) Rearrangement : c.33+44463_c.464-1885del	yes	unknown	172916	118908	106890	0	10
P-0065276-T02-IM7	SOMATIC	ETV6	ETV6	12	12	11828062	12013355	Intron of ETV6(+):25Kb after exon 1	Intron of ETV6(+):7Kb after exon 4		GRCh37	DELETION	8	5	Deletion of 3 exons : out of frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.33+24968_c.463+6860del	yes	unknown	185293	35654	38792	0	5
P-0047634-T01-IM6	SOMATIC	ETV6		12	12	11875796	12017204	Intron of ETV6(+):30Kb before exon 2	Intron of ETV6(+):5Kb before exon 5		GRCh37	DELETION			Deletion of 3 exons : out of frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.34-29588_c.464-5154del			141408	63080	80273	0	49
P-0032174-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11838074	12030278	Intron of ETV6(+):35Kb after exon 1	Intron of ETV6(+):7Kb before exon 6		GRCh37	DELETION	10	18	Deletion of 4 exons : out of frame	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.33+34980_c.1010-7101del	yes	unknown	192204	142200	192214	0	18
P-0047802-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11999366	12020892	Intron of ETV6(+):7Kb before exon 4	Intron of ETV6(+):1Kb before exon 5		GRCh37	DUPLICATION	10	4	Duplication of 1 exon : in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.329-6995_c.464-1466dup	yes	unknown	21526	82812	89899	0	5
P-0068629-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12014855	12026382	Intron of ETV6(+):8Kb before exon 5	Intron of ETV6(+):3Kb after exon 5		GRCh37	DUPLICATION	0	51	Duplication of 1 exon : in frame	IMPPRECISE	5to3	ETV6 (NM_001987) rearrangement: c.464-7503_c.1009+3479dup	yes	unknown	11527	52365	86675	0	51
P-0015360-T01-IM6	SOMATIC	ETV6		12	12	12003177	12009664	Intron of ETV6(+): 3Kb before exon 4	Intron of ETV6(+): 3Kb after exon 4		GRCh37	DUPLICATION			Duplication of 1 exon: in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.329-3184_c.463+3169dup			6487	21944	21261	0	4
P-0020661-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11977923	12010834	Intron of ETV6(+):14Kb before exon 3	Intron of ETV6(+):4Kb after exon 4		GRCh37	DUPLICATION	10	24	Duplication of 2 exons : in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.164-14151_c.463+4339dup	yes	unknown	32911	30249	40094	1	23
P-0034543-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11954645	12012077	Intron of ETV6(+):37Kb before exon 3	Intron of ETV6(+):6Kb after exon 4		GRCh37	DUPLICATION	6	8	Duplication of 2 exons : in frame	PRECISE	5to3	ETV6 (NM_001987) Rearrangement : c.164-37429_c.463+5582dup	yes	unknown	57432	33723	54402	0	8
P-0053920-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11992390	12030613	Intron of ETV6(+):152bp after exon 3	Intron of ETV6(+):7Kb before exon 6		GRCh37	DUPLICATION	10	113	Duplication of 2 exons : in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.328+152_c.1010-6766dup	yes	unknown	38223	148835	238370	0	118
P-0078897-T01-IM7	SOMATIC	ETV6	ETV6	12	12	11915445	12009993	Intron of ETV6(+):10Kb after exon 2	Intron of ETV6(+):3Kb after exon 4		GRCh37	DUPLICATION	10	11	Duplication of 2 exons : in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.163+9932_c.463+3498dup	yes	unknown	94548	15777	19474	0	11
P-0068718-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12031518	12040899	Intron of ETV6(+):6Kb before exon 6	Intron of ETV6(+):2Kb after exon 7		GRCh37	DUPLICATION	10	40	Duplication of 2 exons : out of frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.1010-5861_c.1253+1939dup	yes	unknown	9381	21056	42720	0	44
P-0004790-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11934171	12015975	Intron of ETV6(+): 29Kb after exon 2	Intron of ETV6(+): 6Kb before exon 5		GRCh37	DUPLICATION	19	23	Duplication of 2 exons: in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.163+28658_c.464-6383dup	yes	unknown	81804	118858	123006	0	22
P-0006711-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11972382	12020736	Intron of ETV6(+): 20Kb before exon 3	Intron of ETV6(+): 2Kb before exon 5		GRCh37	DUPLICATION	24	12	Duplication of 2 exons: in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.164-19692_c.464-1622dup	yes	unknown	48354	118810	92923	0	12
P-0010537-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11937333	12007634	Intron of ETV6(+): 32Kb after exon 2	Intron of ETV6(+): 1Kb after exon 4		GRCh37	DUPLICATION	93	84	Duplication of 2 exons: in frame	PRECISE	5to3	ETV6 (NM_001987) Rearrangement : c.163+31820_463+1139dup	yes	unknown	70301	13937	19109	0	74
P-0006953-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11989656	12015285	Intron of ETV6(+): 2Kb before exon 3	Intron of ETV6(+): 7Kb before exon 5		GRCh37	DUPLICATION	74	102	Duplication of 2 exons: in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.164-2418_c.464-7073dup	yes	unknown	25629	103356	177498	0	140
P-0049764-T01-IM6	SOMATIC	ETV6		12	12	11944433	12029431	Intron of ETV6(+):39Kb after exon 2	Intron of ETV6(+):7Kb after exon 5		GRCh37	DUPLICATION			Duplication of 3 exons : in frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.163+38920_c.1009+6528dup			84998	112218	201335	0	33
P-0059971-T01-IM7	SOMATIC	ETV6	ETV6	12	12	11894135	12010850	Intron of ETV6(+):11Kb before exon 2	Intron of ETV6(+):4Kb after exon 4		GRCh37	DUPLICATION	0	82	Duplication of 3 exons : out of frame	IMPPRECISE	5to3	ETV6 (NM_001987) rearrangement: c.34-11249_c.463+4355dup	yes	unknown	116715	30229	43910	0	89
P-0037834-T02-IM6	SOMATIC	ETV6		12	12	11850121	12006543	Intron of ETV6(+):47Kb after exon 1	Intron of ETV6(+):48bp after exon 4		GRCh37	DUPLICATION			Duplication of 3 exons : out of frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.33+47027_c.463+48dup			156422	4287	5814	0	24
P-0011376-T01-IM5	SOMATIC	ETV6	ETV6	12	12	12013458	12042294	Intron of ETV6(+): 7Kb after exon 4	Intron of ETV6(+): 2Kb before exon 8		GRCh37	DUPLICATION	22	13	Duplication of 3 exons: out of frame	PRECISE	5to3	ETV6 (NM_001987) Rearrangement :  c.463+6963_c.1254-1581dup	yes	unknown	28836	201433	242020	0	13
P-0019427-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11826227	12028452	Intron of ETV6(+):23Kb after exon 1	Intron of ETV6(+):6Kb after exon 5		GRCh37	DUPLICATION	10	6	Duplication of 4 exons : out of frame	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.33+23133_c.1009+5549dup	yes	unknown	202225	171233	195186	0	6
P-0051086-T01-IM6	SOMATIC	ETV6	ANO2								GRCh37				ETV6-ANO2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ETV6-ANO2 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon2 (NM_001987) and ANO2 Exon2 (NM_020373). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0016838-T01-IM6	SOMATIC	ETV6	COX7A1	19	12	36644129	12018950	Promoter of COX7A1(-):2Kb from tx start	Intron of ETV6(+):3Kb before exon 5		GRCh37	TRANSLOCATION			ETV6-COX7A1 Fusion	PRECISE	3to5	ETV6 (NM_001987) - COX7A1 (NM_001864) rearrangement: t(12;19)(p13.2;q13.12)(chr12:g.12018950::chr19:g.36644129)			0	0	0	0	15
P-0016838-T01-IM6	SOMATIC	ETV6	HPN								GRCh37				ETV6-HPN Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ETV6-HPN fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon4 (NM_001987) and HPN Exon10 (NM_002151).	yes	unknown					
P-0038901-T01-IM6	SOMATIC	ETV6	ETV6	12	12	8297469	12035047	IGR: 11Kb before POU5F1P3(-)	Intron of ETV6(+):2Kb before exon 6		GRCh37	DELETION	10	38	ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.1010-2332:ETV6_chr12:g.8297469del	yes	unknown	3737578	175204	206936	0	39
P-0051588-T01-IM6	SOMATIC	ETV6	WHSC1	12	4	12008388	1865508	Intron of ETV6(+):2Kb after exon 4	IGR: 8Kb before WHSC1(+)		GRCh37	TRANSLOCATION	10	9	ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: t(4;12)(p16.3;p13.2)(chr4:g.1865508::chr12:g.12008388)	yes	unknown	0	0	0	0	10
P-0054325-T01-IM6	SOMATIC	ETV6	BCL2L14	12	12	12020037	12092716	Intron of ETV6(+):2Kb before exon 5	IGR: 131Kb before BCL2L14(+)		GRCh37	DELETION	10	64	ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.464-2321:ETV6_chr12:g.12092716del	yes	unknown	72679	111520	99756	0	66
P-0057435-T02-IM6	SOMATIC	ETV6	RYR2	12	1	12013251	237547858	Intron of ETV6(+):7Kb after exon 4	Intron of RYR2(+):3Kb before exon 9		GRCh37	TRANSLOCATION	10	55	ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: t(1;12)(q43;p13.2)(chr1:g.237547858::chr12:g.12013251)	yes	unknown	0	0	0	0	59
P-0023439-T01-IM6	SOMATIC	ETV6	ETV6	12	12	10974606	12022951	IGR: 3Kb before TAS2R10(-)	Intron of ETV6(+):48bp after exon 5		GRCh37	INVERSION	10	101	ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: chr12:g.10974606_c.1009+48inv	yes	unknown	1048345	114103	108127	0	127
P-0008709-T01-IM5	SOMATIC	ETV6		12	12	11570805	11992236	IGR: 26Kb before PRB2(-)	Exon 3 of ETV6(+)		GRCh37	DUPLICATION			ETV6-intragenic	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.326_chr12:g.11570805dup			421431	4673	10392	0	23
P-0015558-T01-IM6	SOMATIC	ETV6		15	12	97567900	12019771	IGR: 241Kb before SPATA8(+)	Intron of ETV6(+): 3Kb before exon 5		GRCh37	TRANSLOCATION			ETV6-intragenic	IMPRECISE	5to3	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.2)(chr12:g.12019771::chr15:g.97567900)			0	0	0	0	25
P-0015561-T01-IM6	SOMATIC	ETV6		12	1	12032627	238992569	Intron of ETV6(+): 5Kb before exon 6	IGR: 349Kb before LOC339535(-)		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	3to3	ETV6 (NM_001987) rearrangement: t(1;12)(q43;p13.2)(chr1:g.238992569::chr12:g.12032627)			0	0	0	0	37
P-0016811-T01-IM6	SOMATIC	ETV6		12	12	12034450	12146364	Intron of ETV6(+):3Kb before exon 6	IGR: 78Kb before BCL2L14(+)		GRCh37	DUPLICATION			ETV6-intragenic	PRECISE	5to3	ETV6 (NM_001987) rearrangement: c.1010-2929_chr12:g.12146364dup			111914	26366	123655	0	7
P-0022569-T01-IM6	SOMATIC	ETV6		12	12	11871582	12009114	Intron of ETV6(+):34Kb before exon 2	Intron of ETV6(+):3Kb after exon 4		GRCh37	INVERSION			ETV6-intragenic	IMPPRECISE	5to5	ETV6 (NM_001987) rearrangement: c.34-33802_c.463+2619inv			137532	22157	44314	0	44
P-0023215-T01-IM6	SOMATIC	ETV6		15	12	90039073	12035854	Intron of RHCG(-):518bp after exon 1	Intron of ETV6(+):2Kb before exon 6		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.1)(chr12:g.12035854::chr15:g.90039073)			0	0	0	0	68
P-0025601-T01-IM6	SOMATIC	ETV6		12	12	11225687	12015561	3-UTR of PRH1-PRR4(-):99Kb after coding stop	Intron of ETV6(+):7Kb before exon 5		GRCh37	INVERSION			ETV6-intragenic	IMPPRECISE	3to3	ETV6 (NM_001987) rearrangement: chr12:g.11225687_c.464-6797inv			789874	56636	100717	0	8
P-0027311-T01-IM6	SOMATIC	ETV6		12	12	12037111	12056304	Intron of ETV6(+):267bp before exon 6	3-UTR of RNU6-19P(-):23Kb after coding stop		GRCh37	DELETION			ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.1010-268:ETV6_chr12:g.12056304del			19193	5204	7657	0	22
P-0028712-T01-IM6	SOMATIC	ETV6		21	12	48029480	11992159	IGR: 11Kb before S100B(-)	Exon 3 of ETV6(+)		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	5to3	ETV6 (NM_001987) rearrangement: t(12;21)(p13.2;q22.3)(chr12:g.11992159::chr21:g.48029480)			0	0	0	0	5
P-0031038-T01-IM6	SOMATIC	ETV6		12	12	12032810	12219924	Intron of ETV6(+):5Kb before exon 6	IGR: 4Kb before BCL2L14(+)		GRCh37	DELETION			ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) Rearrangement: c.1010-4569:ETV6_chr12:g.12219924del			187114	37709	28280	0	57
P-0031153-T01-IM6	SOMATIC	ETV6		12	12	6833024	12038915	Promoter of COPS7A(+):424bp from tx start	Exon 7 of ETV6(+)		GRCh37	INVERSION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) Rearrangement: c.1208:ETV6_chr12:g.6833024inv			5205891	203377	117256	0	21
P-0031419-T01-IM6	SOMATIC	ETV6		12	7	12028600	62515009	Intron of ETV6(+):6Kb after exon 5	IGR: 237Kb before ZNF733P(-)		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	3to3	ETV6 (NM_001987) Rearrangement : t(7,12)(q11.21;p13.2) (chr7:g.62515009::chr7:g.12028600)			0	0	0	0	168
P-0031560-T01-IM6	SOMATIC	ETV6		12	12	12016211	12130883	Intron of ETV6(+):6Kb before exon 5	IGR: 93Kb before BCL2L14(+)		GRCh37	DELETION			ETV6-intragenic	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.464-6147_chr12:g.12130883del			114672	152607	137250	0	24
P-0031716-T01-IM6	SOMATIC	ETV6		12	6	12022761	136143760	Exon 5 of ETV6(+)	IGR: 29Kb before PDE7B(+)		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) Rearrangement : t(6;12)(q23.2;p13.2)(chr6:g.136143760::chr12:g.12022761)			0	0	0	0	28
P-0047598-T01-IM6	SOMATIC	ETV6		17	12	40843830	12034691	Exon 16 of CNTNAP1(+)	Intron of ETV6(+):3Kb before exon 6		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: t(12;17)(p13.2;q21.2)(chr12:g.12034691::chr17:g.40843830)			0	0	0	0	124
P-0052383-T01-IM6	SOMATIC	ETV6		15	12	101590135	12025136	Intron of LRRK1(+):147bp after exon 23	Intron of ETV6(+):2Kb after exon 5		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.3)(chr12:g.12025136::chr15:g.101590135)			0	0	0	0	207
P-0067969-T01-IM7	SOMATIC	ETV6		19	12	54887603	12014462	IGR: 22Kb before LAIR1(-)	Intron of ETV6(+):8Kb before exon 5		GRCh37	TRANSLOCATION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: t(12;19)(p13.2;q13.42)(chr12:g.12014462::chr19:g.54887603)			0	0	0	0	18
P-0086096-T02-IM7	SOMATIC	ETV6		12	12	11656427	12032321	IGR: 45Kb before LINC01252(+)	Intron of ETV6(+):5Kb before exon 6		GRCh37	INVERSION			ETV6-intragenic	PRECISE	5to5	ETV6 (NM_001987) rearrangement: c.1010-5058:ETV6_chr12:g.11656427inv			375894	83201	147118	0	32
P-0008691-T01-IM5	SOMATIC	ETV6	ITPR2	12	12	12029665	26940768	Intron of ETV6(+): 7Kb after exon 5	Intron of ITPR2(-): 2Kb after exon 2		GRCh37	DUPLICATION			ETV6-ITPR2 Fusion	PRECISE	5to3	ETV6 (NM_001987) - ITPR2 (NM_002223) rearrangement: c.1009+6762:ETV6_c.163+2322:ITPR2dup.			14911103	162497	190114	0	24
P-0015016-T01-IM6	SOMATIC	ETV6	LOH12CR1								GRCh37				ETV6-LOH12CR1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ETV6-LOH12CR1 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon1 (NM_001987) and LOH12CR1 Exon4 (NM_058169). http://www.nature.com/nbt/journal/v33/n3/pdf/nbt.3080.pdf	yes	unknown					
P-0025507-T01-IM6	SOMATIC	ETV6	NTRK3								GRCh37				ETV6-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ETV6-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon5 (NM_001987) and NTRK3 Exon15 (NM_002530).	yes	unknown					
P-0035552-T01-IM6	SOMATIC	ETV6	NTRK3								GRCh37				ETV6-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ETV6-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon4 (NM_001987) and NTRK3 Exon14 (NM_002530).	yes	unknown					
P-0035767-T01-IM6	SOMATIC	ETV6	NTRK3								GRCh37				ETV6-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ETV6-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon5 (NM_001987) and NTRK3 Exon15 (NM_002530).	yes	unknown					
P-0023215-T01-IM6	SOMATIC	ETV6	NTRK3								GRCh37				ETV6-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: ETV6-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes ETV6 Exon5 (NM_001987) and NTRK3 Exon15 (NM_002530).	yes	unknown					
P-0051809-T01-IM6	SOMATIC	ETV6	PA2G4								GRCh37				ETV6-PA2G4 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ETV6-PA2G4 fusion. Note: The rearrangement is an out of frame fusion between genes ETV6 Exon1 (NM_001987) and PA2G4 Exon2 (NM_006191). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0033921-T02-IM6	SOMATIC	ETV6	NTRK3	15	12	88516534	12031161	Intron of NTRK3(-):33Kb before exon 15	Intron of ETV6(+):6Kb before exon 6		GRCh37	TRANSLOCATION	10	15	Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12031161::chr15:g.88516534)	yes	unknown	0	0	0	0	12
P-0040355-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88497191	12036111	Intron of NTRK3(-):13Kb before exon 15	Intron of ETV6(+):1Kb before exon 6		GRCh37	TRANSLOCATION	10	84	Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12036111::chr15:g.88497191)	yes	unknown	0	0	0	0	81
P-0042503-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88556067	12032802	Intron of NTRK3(-):20Kb after exon 14	Intron of ETV6(+):5Kb before exon 6		GRCh37	TRANSLOCATION	10	245	Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12032802::chr15:g.88556067)	yes	unknown	0	0	0	0	244
P-0064964-T01-IM7	SOMATIC	ETV6	NTRK3	15	12	88564682	12032310	Intron of NTRK3(-):11Kb after exon 14	Intron of ETV6(+):5Kb before exon 6		GRCh37	TRANSLOCATION	0	6	Protein Fusion: in frame  {ETV6:NTRK3}	IMPPRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12032310::chr15:g.88564682)	yes	unknown	0	0	0	0	6
P-0077835-T02-IM7	SOMATIC	ETV6	NTRK3	15	12	88529270	12030299	Intron of NTRK3(-):45Kb before exon 15	Intron of ETV6(+):7Kb before exon 6		GRCh37	TRANSLOCATION	10	575	Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12030299::chr15:g.88529270)	yes	unknown	0	0	0	0	575
P-0025507-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88544573	12024078	Intron of NTRK3(-):32Kb after exon 14	Intron of ETV6(+):1Kb after exon 5		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) :  t(12;15)(p13.2;q25.3)(chr12:g.12024078::chr15:g.88544573)			0	0	0	0	29
P-0035552-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88651251	12020963	Intron of NTRK3(-):18Kb after exon 13	Intron of ETV6(+):1Kb before exon 5		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20): t(12;15)(p13.2;q25.3)(chr12:g.12020963::chr15:g.88651251)			0	0	0	0	66
P-0035767-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88505787	12029143	Intron of NTRK3(-):22Kb before exon 15	Intron of ETV6(+):6Kb after exon 5		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {ETV6:NTRK3}	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12029143::chr15:g.88505787)			0	0	0	0	77
P-0076973-T01-IM7	SOMATIC	ETV6	RECQL	12	12	11905854	21648675	Intron of ETV6(+):341bp after exon 2	Intron of RECQL(-):4Kb after exon 2		GRCh37	INVERSION	6	4	Protein Fusion: in frame  {ETV6:RECQL}	PRECISE	3to3	ETV6 (NM_001987) - RECQL (NM_032941) rearrangement: c.163+341:ETV6_c.16+3814:RECQLinv	yes	unknown	9742821	202628	210658	0	4
P-0022579-T01-IM6	SOMATIC	ETV6	KIAA1467	12	12	12035084	13231513	Intron of ETV6(+):2Kb before exon 6	Intron of KIAA1467(+):1Kb before exon 12		GRCh37	DUPLICATION	10	3	Protein Fusion: in frame  {KIAA1467:ETV6}	PRECISE	5to3	KIAA1467 (NM_020853) - ETV6 (NM_001987) rearrangement: c.1643-1210:KIAA1467_c.1010-2295:ETV6dup	yes	unknown	1196429	15758	30777	0	7
P-0070199-T01-IM7	SOMATIC	ETV6	ZFTRAF1	12	8	12018372	145675796	Intron of ETV6(+):4Kb before exon 5	Exon 5 of CYHR1(-)		GRCh37	TRANSLOCATION	10	14	Protein Fusion: mid-exon  {ETV6:ZFTRAF1}	PRECISE	3to3	ETV6 (NM_001987) - CYHR1 (NM_138496) rearrangement: t(8;12)(q24.3;p13.2)(chr8:g.145675796::chr12:g.12018372)	yes	unknown	0	0	0	0	14
P-0060870-T01-IM7	SOMATIC	ETV6	AEBP2	12	12	12025073	19623670	Intron of ETV6(+):2Kb after exon 5	Intron of AEBP2(+):3Kb before exon 3		GRCh37	DELETION	0	6	Protein Fusion: out of frame  {ETV6:AEBP2}	IMPPRECISE	3to5	ETV6 (NM_001987) - AEBP2 (NM_001114176) rearrangement: c.1009+2170:ETV6_c.880-2512:AEBP2del	yes	unknown	7598597	132406	137297	0	6
P-0027889-T01-IM6	SOMATIC	ETV6	APOLD1	12	12	12030422	12909150	Intron of ETV6(+):7Kb before exon 6	Intron of APOLD1(+):30Kb after exon 1		GRCh37	DELETION	10	9	Protein Fusion: out of frame  {ETV6:APOLD1}	PRECISE	3to5	ETV6:NM_001987) - APOLD1 (NM_001130415) rearrangement: c.1010-6957:ETV6_c.96+30120:APOLD1del	yes	unknown	878728	70692	89103	0	10
P-0009946-T01-IM5	SOMATIC	ETV6	LOH12CR1	12	12	12034181	12610607	Intron of ETV6(+): 3Kb before exon 6	Intron of LOH12CR1(+): 8Kb before exon 4		GRCh37	DUPLICATION	26	17	Protein fusion: out of frame (LOH12CR1-ETV6)	PRECISE	5to3	LOH12CR1 (NM_058169) - ETV6 (NM_001987) rearrangement: c.361-7873:LOH12CR1_c.1010-3198:ETV6dup	yes	unknown	576426	24290	32565	0	13
P-0020402-T01-IM6	SOMATIC	ETV6		12	12	12016969	93097480	Intron of ETV6(+):5Kb before exon 5	5-UTR of C12orf74(+):3Kb before coding start		GRCh37	DELETION			Transcript Fusion {ETV6:C12orf74}	PRECISE	3to5	ETV6 (NM_001987) rearrangement: c.464-5389:ETV6_chr12:g.93097480del			81080511	770427	970149	0	13
P-0015744-T01-IM6	SOMATIC	EWSR1	NF2	22	22	29691931	30089394	Intron of EWSR1(+): 298bp before exon 11	Intron of NF2(+): 1Kb before exon 5		GRCh37	INVERSION	35	26	Antisense fusion	PRECISE	3to3	EWSR1 (NM_013986) - NF2 (NM_000268) rearrangement: c.1180-298:EWSR1_c.1738-1347:NF2inv	yes	unknown	397463	25698	25666	0	26
P-0029301-T01-IM6	SOMATIC	EWSR1	RASL10A	22	22	29691746	29711589	Intron of EWSR1(+):482bp before exon 13	5-UTR of RASL10A(-):2Kb before coding start		GRCh37	DELETION	10	4	Antisense Fusion	PRECISE	3to5	EWSR1 (NM_013986) rearrangement: c.946-483:EWSR1_chr22:g.29711589del	yes	unknown	19843	14673	980	0	4
P-0020837-T01-IM6	SOMATIC	EWSR1		22	20	29694204	404212	Intron of EWSR1(+):265bp after exon 14	Intron of RBCK1(+):1Kb after exon 7		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to3	EWSR1 (NM_013986) rearrangement: t(20,22)(p13,q12.2)(chr20:g.404212::chr22:g.29694204)			0	0	0	0	6
P-0083073-T01-IM7	SOMATIC	EWSR1		22	22	29677400	29692447	Intron of EWSR1(+):978bp before exon 7	Intron of EWSR1(+):89bp after exon 13		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	EWSR1 (NM_013986) rearrangement: c.432-979_c.1309+89inv			15047	19076	37849	0	17
P-0084813-T01-IM7	SOMATIC	EWSR1		22	22	29688631	29695146	Intron of EWSR1(+):36bp after exon 12	Intron of EWSR1(+):77bp before exon 16		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	EWSR1 (NM_013986) rearrangement: c.1179+36_c.1596-78inv			6515	15911	83927	0	56
P-0034031-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29683155	29744005	Intron of EWSR1(+):32bp after exon 8	Intron of AP1B1(-):1Kb after exon 11		GRCh37	DUPLICATION	10	17	AP1B1-EWSR1 fusion	PRECISE	5to3	EWSR1 (NM_013986) - AP1B1 (NM_001127) Rearrangement: c.811+32:EWSR1_c.1437+1202:AP1B1dup	yes	unknown	60850	57650	103441	0	17
P-0018693-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29669607	29688035	Intron of EWSR1(+):122bp before exon 4	Intron of EWSR1(+):90bp before exon 11		GRCh37	DELETION	10	6	Deletion of 7 exons : out of frame	PRECISE	3to5	EWSR1 (NM_013986) rearrangement: c.103-123_c.1028-91del	yes	unknown	18428	34842	21822	0	6
P-0046090-T02-IM6	SOMATIC	EWSR1	EWSR1	22	22	29692202	29695064	Intron of EWSR1(+):26bp before exon 13	Intron of EWSR1(+):159bp before exon 16		GRCh37	DUPLICATION	0	334	Duplication of 3 exons : out of frame	IMPPRECISE	5to3	EWSR1 (NM_013986) rearrangement: c.1180-27_c.1596-160dup	yes	unknown	2862	12217	46413	0	343
P-0010553-T01-IM5	SOMATIC	EWSR1	EWSR1	22	22	29666935	29687828	Intron of EWSR1(+): 1Kb before exon 2	Intron of EWSR1(+): 240bp after exon 8		GRCh37	DUPLICATION	31	38	Duplication of 7 exons: in frame	PRECISE	5to3	EWSR1 (NM_013986) rearrangement: c.14-1270_c.1027+240dup	yes	unknown	20893	33314	38200	0	38
P-0054697-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	28300570	29687570	Intron of PITPNB(-):6Kb after exon 3	Exon 10 of EWSR1(+)		GRCh37	DELETION	10	10	EWSR1-intragenic	PRECISE	3to5	EWSR1 (NM_013986) rearrangement: c.1009:EWSR1_chr22:g.28300570del	yes	unknown	1387000	65189	56481	0	10
P-0048660-T02-IM7	SOMATIC	EWSR1	PCK1	22	20	29683738	56148508	Intron of EWSR1(+):615bp after exon 8	IGR: 12Kb before PCK1(+)		GRCh37	TRANSLOCATION	10	24	EWSR1-intragenic	PRECISE	5to3	EWSR1 (NM_013986) rearrangement: t(20;22)(q13.31;q12.2)(chr20:g.56148508::chr22:g.29683738)	yes	unknown	0	0	0	0	24
P-0075089-T02-IM7	SOMATIC	EWSR1	EWSR1	22	22	29693153	29694498	Intron of EWSR1(+):663bp before exon 14	Intron of EWSR1(+):224bp before exon 15		GRCh37	INVERSION	8	2	EWSR1-intragenic	PRECISE	5to5	EWSR1 (NM_013986) rearrangement: c.1310-664_c.1433-225inv	yes	unknown	1345	3295	4883	0	2
P-0014976-T01-IM6	SOMATIC	EWSR1		22	22	27475510	29689313	IGR: 422Kb before MIAT(+)	Intron of EWSR1(+): 718bp after exon 10		GRCh37	DELETION			EWSR1-intragenic	PRECISE	3to5	EWSR1 (NM_013986) Rearrangement : c.945+718:EWSR1_chr22:27475510del			2213803	65840	71322	0	26
P-0020833-T01-IM6	SOMATIC	EWSR1		22	22	24063333	29693900	IGR: 20Kb before ZNF70(-)	Exon 14 of EWSR1(+)		GRCh37	DELETION			EWSR1-intragenic	PRECISE	3to5	EWSR1 (NM_013986) rearrangement: g.24063333:ZNF70_c.1393:EWSR1del			5630567	159410	208219	0	16
P-0024532-T01-IM6	SOMATIC	EWSR1		22	10	29683485	50812403	Intron of EWSR1(+):362bp after exon 8	IGR: 5Kb before CHAT(+)		GRCh37	TRANSLOCATION			EWSR1-intragenic	PRECISE	5to5	EWSR1 (NM_013986) rearrangement: t(10;22)(q11.23;q12.2)(chr10:g.50812403::chr22:g.29683485)			0	0	0	0	61
P-0031996-T01-IM6	SOMATIC	EWSR1		22	12	29684857	37879543	Intron of EWSR1(+):82bp after exon 9	IGR: 831Kb before ALG10B(+)		GRCh37	TRANSLOCATION			EWSR1-intragenic	IMPPRECISE	3to3	EWSR1 (NM_013986) rearrangement: t(12;22)(q11;q12.2)(chr12:g.37879543::chr22:g.29684857)			0	0	0	0	69
P-0051979-T01-IM6	SOMATIC	EWSR1		22	8	29683473	115232650	Intron of EWSR1(+):350bp after exon 8	IGR: 1Mb before TRPS1(-)		GRCh37	TRANSLOCATION			EWSR1-intragenic	PRECISE	5to3	EWSR1 (NM_013986) rearrangement: t(8;22)(q23.3;q12.2)(chr8:g.115232650::chr22:g.29683473)			0	0	0	0	36
P-0001021-T01-IM3	SOMATIC	EWSR1	GAS2L1	22	22	29689439	29706086	Intron of EWSR1(+): 844bp after exon 10	Intron of GAS2L1(+): 343bp before exon 3		GRCh37	DELETION	25	14	Protein fusion: in frame (EWSR1-GAS2L1)	PRECISE	3to5	EWSR1 (NM_013986) - GAS2L1 (NM_006478) Deletion:  c.1179+844_c.634-343del	yes	unknown	16647	13280	9998	0	7
P-0015353-T01-IM6	SOMATIC	EWSR1	CCDC157	22	22	29690115	30767431	Intron of EWSR1(+): 2Kb after exon 10	Intron of CCDC157(+): 208bp before exon 6		GRCh37	DUPLICATION	36	39	Protein fusion: out of frame (CCDC157-EWSR1)	PRECISE	5to3	EWSR1 (NM_013986) - CCDC157 (NM_001017437) rearrangement: c.945+1520_c.1046-208dup	yes	unknown	1077316	44362	58431	0	39
P-0010994-T01-IM5	SOMATIC	EWSR1	MTMR3	22	22	29686069	30356897	Intron of EWSR1(+): 333bp before exon 9	5-UTR of MTMR3(+): 10Kb before coding start		GRCh37	DUPLICATION	23	20	Transcript fusion (MTMR3-EWSR1)	PRECISE	5to3	MTMR3 (NM_021090) - EWSR1 (NM_013986) rearrangement: c.-85+3820:MTMR3_c.992+1294:EWSR1dup	yes	unknown	670828	81722	113478	0	20
P-0063055-T01-IM7	SOMATIC	EXD3	NOTCH1	9	9	139417471	140284881	Exon 4 of NOTCH1(-)	Intron of EXD3(-):5Kb after exon 2		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {EXD3:NOTCH1}	PRECISE	3to5	EXD3 (NM_017820) - NOTCH1 (NM_017617) rearrangement: c.55+4874:EXD3_c.573:NOTCH1del	yes	unknown	867410	57360	37435	0	21
P-0027590-T01-IM6	SOMATIC	EXOC3L2	ERCC2	19	19	45727771	45858072	Intron of EXOC3L2(-):264bp after exon 6	Exon 17 of ERCC2(-)		GRCh37	DELETION	10	16	Protein Fusion: mid-exon  {ERCC2:EXOC3L2}	PRECISE	3to5	ERCC2 (NM_000400) - EXOC3L2 (NM_138568) rearrangement: c.1581:ERCC2_c.540+265: EXOC3L2 del	yes	unknown	130301	9382	11966	0	16
P-0039051-T01-IM6	SOMATIC	EXOC4	SMO	7	7	128845093	133355786	Exon 3 of SMO(+)	Intron of EXOC4(+):41Kb after exon 10		GRCh37	DUPLICATION	10	77	Protein Fusion: mid-exon  {EXOC4:SMO}	PRECISE	5to3	EXOC4 (NM_021807) - SMO (NM_005631) rearrangement: c.1514+40892:EXOC4_c.587:SMOdup	yes	unknown	4510693	20733	27400	0	83
P-0024206-T01-IM6	SOMATIC	EXOC4	BRAF	7	7	132951665	140487956	Intron of EXOC4(+):8Kb before exon 2	Intron of BRAF(-):572bp before exon 9		GRCh37	INVERSION	10	9	Protein Fusion: out of frame  {EXOC4:BRAF}	PRECISE	3to3	EXOC4 (NM_021807) - BRAF (NM_004333) rearrangement: c.87-8072:EXOC4_c.1141-572:BRAFinv	yes	unknown	7536291	70391	79924	0	9
P-0066053-T01-IM7	SOMATIC	EZH1	EZH1	18	17	9943582	40855832	Intron of VAPA(+):1Kb before exon 5	Exon 19 of EZH1(-)		GRCh37	TRANSLOCATION	10	17	Antisense Fusion	PRECISE	3to5	EZH1 (NM_001991) rearrangement: t(17;18)(q21.2;p11.22)(chr17:g.40855832::chr18:g.9943582)	yes	unknown	0	0	0	0	17
P-0071067-T01-IM7	SOMATIC	EZH1	EZH1	17	17	30204179	40857152	Intron of UTP6(-):1Kb after exon 13	Exon 17 of EZH1(-)		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	5to5	EZH1 (NM_001991) rearrangement: c.1889:EZH1_chr17:g.30204179inv	yes	unknown	10652973	243613	396777	0	21
P-0020188-T01-IM6	SOMATIC	EZH1	EZH1	17	17	40872315	40875225	Exon 7 of EZH1(-)	Intron of EZH1(-):292bp before exon 6		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	EZH1(NM_001991) Rearrangement : c.367-292_640del	yes	unknown	2910	5042	3416	0	5
P-0082375-T01-IM7	SOMATIC	EZH1		17	17	40870595	40890194	Exon 9 of EZH1(-)	5-UTR of EZH1(-):36Kb before coding start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	EZH1 (NM_001991) rearrangement: c.808:EZH1_chr17:g.40890194del			19599	7282	10186	0	9
P-0050575-T02-IM6	SOMATIC	EZH1	EZH1	20	17	5910609	40864222	IGR: 8Kb before TRMT6(-)	Intron of EZH1(-):84bp after exon 12		GRCh37	TRANSLOCATION	10	37	EZH1-intragenic	PRECISE	3to5	EZH1 (NM_001991) rearrangement: t(17;20)(q21.2;p12.3)(chr17:g.40864222::chr20:g.5910609)	yes	unknown	0	0	0	0	37
P-0036887-T01-IM6	SOMATIC	EZH1		22	17	23513917	40859970	IGR: 9Kb before BCR(+)	Intron of EZH1(-):5bp after exon 15		GRCh37	TRANSLOCATION			EZH1-intragenic	PRECISE	3to5	EZH1 (NM_001991) rearrangement: t(17;22)(q21.2;q11.23)(chr17:g.40859970::chr22:g.23513917)			0	0	0	0	77
P-0016895-T01-IM6	SOMATIC	EZH1	FGF14	17	13	40876400	102490730	Exon 5 of EZH1(-)	Intron of FGF14(-):30Kb after exon 3		GRCh37	TRANSLOCATION	10	24	Protein Fusion: mid-exon  {EZH1:FGF14}	PRECISE	5to3	EZH1 (NM_001991) - FGF14 (NM_175929) Rearrangement : t(13;17)(q33.1;q21.2)(chr13:g.102490730::chr17:g.40876400)	yes	unknown	0	0	0	0	24
P-0036059-T01-IM6	SOMATIC	EZH1	WNT3	17	17	40858062	44892418	Exon 16 of EZH1(-)	Intron of WNT3(-):3Kb after exon 1		GRCh37	DUPLICATION	0	25	Protein Fusion: mid-exon  {EZH1:WNT3}	IMPPRECISE	5to3	EZH1 (NM_001991) - WNT3 (NM_030753) rearrangement: c.1802:EZH1_c.80+3466:WNT3dup	yes	unknown	4034356	94827	142430	0	25
P-0028038-T01-IM6	SOMATIC	EZH1	RAB37	17	17	40872537	72716342	Intron of EZH1(-):70bp before exon 7	Intron of RAB37(+):9Kb before exon 2		GRCh37	INVERSION	10	7	Protein Fusion: out of frame  {RAB37:EZH1}	PRECISE	3to3	RAB37 (NM_175738) - EZH1 (NM_001991) rearrangement: c.73-9053:RAB37_c.488-70:EZH1inv	yes	unknown	31843805	250418	407829	0	7
P-0042656-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148415342	148523596	5-UTR of CUL1(+):12Kb before coding start	Exon 8 of EZH2(-)		GRCh37	DELETION	10	21	Antisense Fusion	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.857:EZH2_chr7:g.148415342del	yes	unknown	108254	5026	14545	0	21
P-0027086-T01-IM6	SOMATIC	EZH2		7	7	148458308	148544286	Intron of CUL1(+):720bp after exon 7	Exon 2 of EZH2(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.105:EZH2_chr7:g.148458308del			85978	14113	19233	0	5
P-0041510-T01-IM6	SOMATIC	EZH2		7	7	148430050	148543507	Intron of CUL1(+):3Kb after exon 2	Intron of EZH2(-):54bp after exon 3		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.246+55:EZH2_chr7:g.148430050del			113457	24054	19657	0	48
P-0060174-T02-IM7	SOMATIC	EZH2		7	7	148407086	148544185	5-UTR of CUL1(+):20Kb before coding start	Intron of EZH2(-):88bp after exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.117+89:EZH2_chr7:g.148407086del			137099	26261	17752	0	4
P-0030981-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148508471	148515121	Intron of EZH2(-):245bp after exon 16	Exon 10 of EZH2(-)		GRCh37	DELETION	10	25	Deletion within transcript : mid-exon	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.1088_c.1947+246del	yes	unknown	6650	3921	4726	0	25
P-0057229-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148507450	148547352	Exon 17 of EZH2(-)	5-UTR of EZH2(-):43Kb before coding start		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.2004:EZH2_chr7:g.148547352del	yes	unknown	39902	13536	18796	0	6
P-0051869-T01-IM6	SOMATIC	EZH2		7	7	148513855	148515773	Exon 12 of EZH2(-)	Intron of EZH2(-):564bp before exon 10		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	EZH2 (NM_004456) rearrangement: c.1000-564_c.1426del			1918	3364	942	0	7
P-0080214-T01-IM7	SOMATIC	EZH2	EZH2	7	7	148511816	148529675	Intron of EZH2(-):189bp after exon 14	Intron of EZH2(-):50bp after exon 4		GRCh37	DUPLICATION	10	9	Duplication of 10 exons : out of frame	PRECISE	5to3	EZH2 (NM_004456) rearrangement: c.363+51_c.1672+190dup	yes	unknown	17859	9354	24133	0	9
P-0041666-T01-IM6	SOMATIC	EZH2		7	7	148523524	148534844	Intron of EZH2(-):21bp after exon 8	Intron of EZH2(-):5Kb before exon 4		GRCh37	DUPLICATION			Duplication of 5 exons : out of frame	PRECISE	5to3	EZH2 (NM_004456) rearrangement: c.247-5002_c.907+22dup			11320	4290	5901	0	6
P-0064588-T01-IM7	SOMATIC	EZH2	EZH2	7	7	148515519	148516773	Intron of EZH2(-):310bp before exon 10	Exon 9 of EZH2(-)		GRCh37	INVERSION	6	2	EZH2-intragenic	PRECISE	3to3	EZH2 (NM_004456) rearrangement: c.914_c.1000-310inv	yes	unknown	1254	1210	357	0	2
P-0067739-T01-IM7	SOMATIC	EZH2	EZH2	10	7	17511855	148506157	IGR: 83Kb before ST8SIA6-AS1(+)	Intron of EZH2(-):5bp after exon 19		GRCh37	TRANSLOCATION	10	36	EZH2-intragenic	PRECISE	3to3	EZH2 (NM_004456) rearrangement: t(7;10)(q36.1;p12.33)(chr7:g.148506157::chr10:g.17511855)	yes	unknown	0	0	0	0	36
P-0044916-T01-IM6	SOMATIC	EZH2		7	7	148543784	148612082	Intron of EZH2(-):94bp before exon 3	IGR: 73Kb before GHET1(+)		GRCh37	INVERSION			EZH2-intragenic	PRECISE	3to3	EZH2 (NM_004456) rearrangement: c.118-94:EZH2_chr7:g.148612082inv			68298	1129	2190	0	6
P-0068902-T02-IM7	SOMATIC	EZH2	NFASC	7	1	148513757	204945647	Intron of EZH2(-):18bp after exon 12	Intron of NFASC(+):151bp before exon 15		GRCh37	TRANSLOCATION	10	40	Protein Fusion: in frame  {EZH2:NFASC}	PRECISE	5to5	EZH2 (NM_004456) - NFASC (NM_001005388) rearrangement: t(1;7)(q32.1;q36.1)(chr1:g.204945647::chr7:g.148513757)	yes	unknown	0	0	0	0	43
P-0059773-T01-IM7	SOMATIC	EZH2	ZNF777	7	7	148507378	149135068	Intron of EZH2(-):46bp after exon 17	Intron of ZNF777(-):1Kb before exon 5		GRCh37	DUPLICATION	0	22	Protein Fusion: in frame  {EZH2:ZNF777}	IMPPRECISE	5to3	EZH2 (NM_004456) - ZNF777 (NM_015694) rearrangement: c.2029+47:EZH2_c.1088-1151:ZNF777dup	yes	unknown	627690	22639	25250	0	24
P-0063081-T02-IM7	SOMATIC	EZR	ROS1								GRCh37				EZR-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EZR-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes EZR Exon9 (NM_003379) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0072894-T01-IM7	SOMATIC	EZR	ROS1								GRCh37				EZR-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: EZR-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes EZR Exon9 (NM_003379) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0057167-T01-IM6	SOMATIC	EZR	ROS1	6	6	117646567	159191788	Intron of ROS1(-):819bp after exon 33	Intron of EZR(-):7bp after exon 9		GRCh37	DELETION	9	4	Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+8:EZR_c.5557+820:ROS1del	yes	unknown	41545221	255314	308058	0	4
P-0028081-T01-IM6	SOMATIC	EZR	ROS1	6	6	117647275	159191511	Intron of ROS1(-):111bp after exon 33	Intron of EZR(-):284bp after exon 9		GRCh37	DELETION	10	45	Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+285:EZR_c.5557+112:ROS1del	yes	unknown	41544236	223664	151312	0	45
P-0051040-T04-IM7	SOMATIC	EZR	ROS1	6	6	117646327	159191557	Intron of ROS1(-):749bp before exon 34	Intron of EZR(-):238bp after exon 9		GRCh37	DELETION	10	7	Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+239:EZR_c.5558-749:ROS1del	yes	unknown	41545230	218125	301914	0	7
P-0079512-T02-IM7	SOMATIC	EZR	ROS1	6	6	117645896	159191578	Intron of ROS1(-):318bp before exon 34	Intron of EZR(-):217bp after exon 9		GRCh37	DELETION	10	28	Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+218:EZR_c.5558-318:ROS1del	yes	unknown	41545682	390075	425042	0	28
P-0072894-T01-IM7	SOMATIC	EZR	ROS1	6	6	117645856	159191659	Intron of ROS1(-):278bp before exon 34	Intron of EZR(-):136bp after exon 9		GRCh37	DELETION			Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+137:EZR_c.5558-278:ROS1del			41545803	312575	598160	0	89
P-0074440-T04-IM7	SOMATIC	EZR	ROS1	6	6	117646610	159191139	Intron of ROS1(-):776bp after exon 33	Intron of EZR(-):163bp before exon 10		GRCh37	DELETION			Protein Fusion: in frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1091-163:EZR_c.5557+777:ROS1del			41544529	293749	252051	0	143
P-0077079-T02-IM7	SOMATIC	EZR	ROS1	6	6	117650360	159191468	Intron of ROS1(-):131bp after exon 32	Intron of EZR(-):327bp after exon 9		GRCh37	DELETION	10	21	Protein Fusion: out of frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+328:EZR_c.5366+132:ROS1del	yes	unknown	41541108	306522	364768	0	21
P-0080002-T02-IM7	SOMATIC	EZR	ROS1	6	6	117649330	159191183	Intron of ROS1(-):1Kb after exon 32	Intron of EZR(-):207bp before exon 10		GRCh37	DELETION			Protein Fusion: out of frame  {EZR:ROS1}	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1091-207:EZR_c.5366+1162:ROS1del			41541853	363501	338101	0	99
P-0021262-T01-IM6	SOMATIC	F11	NTRK1								GRCh37				F11-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: F11-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes F11 Exon4 (NM_000128) and NTRK1 Exon10 (NM_002529).	yes	unknown					
P-0021262-T01-IM6	SOMATIC	F11R	NTRK1	1	1	156844288	160970239	Intron of NTRK1(+):74bp before exon 10	Intron of F11R(-):101bp before exon 5		GRCh37	INVERSION			Protein Fusion: in frame  {F11R:NTRK1}	PRECISE	5to5	F11R (NM_016946) - NTRK1 (NM_002529) rearrangement: c.389-101:F11R_c.1196-75:NTRK1inv			4125951	42669	38082	0	62
P-0034217-T01-IM6	SOMATIC	FAAH2	POLE	X	12	57359775	133251829	Intron of FAAH2(+):2Kb after exon 4	Intron of POLE(-):154bp after exon 12		GRCh37	TRANSLOCATION	10	26	Protein Fusion: out of frame  {POLE:FAAH2}	PRECISE	5to5	POLE (NM_006231) - FAAH2 (NM_174912) rearrangement: t(X;12)(p11.21;q24.33)(chrX:g.57359775::chr12:g.133251829)	yes	unknown	0	0	0	0	25
P-0015084-T01-IM6	SOMATIC	FAIM2	SMARCD1	12	12	50293887	50479828	Intron of FAIM2(-): 1Kb after exon 2	Intron of SMARCD1(+): 116bp before exon 2		GRCh37	INVERSION			Protein fusion: out of frame (FAIM2-SMARCD1)	PRECISE	5to5	FAIM2 (NM_012306) - SMARCD1 (NM_003076) rearrangement: c.211+1026:FAIM2_c.178-116:SMARCD1inv			185941	4064	3795	0	5
P-0033939-T01-IM6	SOMATIC	FAM135B	RECQL4	8	8	139223221	145738161	Intron of FAM135B(-):13Kb before exon 8	Intron of RECQL4(-):7bp before exon 17		GRCh37	DUPLICATION	10	57	Protein Fusion: out of frame  {FAM135B:RECQL4}	PRECISE	5to3	FAM135B (NM_015912) - RECQL4 (NM_004260) rearrangement: c.670-13309:FAM135B_c.2757-7:RECQL4	yes	unknown	6514940	49253	150089	0	64
P-0006921-T01-IM5	SOMATIC	FAM135B	ROS1	8	6	138220899	117648534	IGR: 921Kb before FAM135B(-)	Intron of ROS1(-): 957bp before exon 33		GRCh37	TRANSLOCATION	21	67	ROS1-FAM135B fusion	PRECISE	3to5	FAM135B (NM_015912) - ROS1 (NM_002944) rearrangement : t(6;8)(q22;q24)(chr6:g.117648534::chr8:g.138220899)	yes	unknown	0	0	0	0	66
P-0044659-T01-IM6	SOMATIC	FAM172A	NPM1	5	5	93018937	170827157	Intron of FAM172A(-):62Kb before exon 9	Exon 7 of NPM1(+)		GRCh37	INVERSION	9	2	Protein Fusion: mid-exon  {FAM172A:NPM1}	PRECISE	5to5	FAM172A (NM_032042) - NPM1 (NM_002520) rearrangement: c.1109-62102:FAM172A_c.525:NPM1inv	yes	unknown	77808220	223376	259789	0	2
P-0016849-T01-IM6	SOMATIC	FAM46C	CASQ2	1	1	116281889	118166180	Intron of CASQ2(-):933bp before exon 4	Exon 2 of FAM46C(+)		GRCh37	DELETION			FAM46C-CASQ2 Fusion	PRECISE	3to5	FAM46C (NM_017709) - CASQ2 (NM_001232) rearrangement: c.690:FAM46C_c.421-933:CASQ2del			1884291	13782	29330	0	118
P-0035890-T01-IM6	SOMATIC	FAM46C	FAM46C	1	1	118165860	118247292	Exon 2 of FAM46C(+)	IGR: 99Kb before FAM46C(+)		GRCh37	DELETION	10	28	FAM46C-intragenic	PRECISE	3to5	FAM46C (NM_017709) rearrangement: c.370:FAM46C_chr1:g.118247292del	yes	unknown	81432	4932	9543	0	33
P-0067146-T01-IM7	SOMATIC	FAM53A	FGFR3	4	4	1643133	1803703	Exon 5 of FAM53A(-)	Exon 7 of FGFR3(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {FAM53A:FGFR3}	PRECISE	5to5	FAM53A (NM_001174070) - FGFR3 (NM_000142) fusion: c.1084:FAM53A_c.881:FGFR3inv			160570	14907	47049	0	45
P-0037088-T01-IM6	SOMATIC	FAM83B	NOTCH4	6	6	32187450	54754439	Exon 8 of NOTCH4(-)	Intron of FAM83B(+):19Kb after exon 2		GRCh37	INVERSION	0	5	Protein Fusion: mid-exon  {FAM83B:NOTCH4}	IMPPRECISE	3to3	FAM83B (NM_001010872) -NOTCH4(NM_004557) Rearrangement : c.444+18951:FAM83B_c.1429:NOTCH4inv	yes	unknown	22566989	108680	171600	0	5
P-0076956-T01-IM7	SOMATIC	FAM83D	SRC	20	20	36014507	37579087	Exon 5 of SRC(+)	Intron of FAM83D(+):1Kb before exon 4		GRCh37	DUPLICATION	10	20	Protein Fusion: mid-exon  {FAM83D:SRC}	PRECISE	5to3	FAM83D (NM_030919) - SRC (NM_198291) rearrangement: c.867-1095:FAM83D_c.280:SRCdup	yes	unknown	1564580	23892	33570	0	20
P-0040519-T01-IM6	SOMATIC	FANCA	FANCA	16	16	88532673	89865347	Intron of ZFPM1(+):13Kb after exon 1	Intron of FANCA(-):226bp after exon 10		GRCh37	DELETION	10	14	Antisense Fusion	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.893+227:FANCA_chr16:g.88532673del	yes	unknown	1332674	37725	90626	0	17
P-0050445-T01-IM6	SOMATIC	FANCA	FANCA	16	16	50248117	89877899	Intron of PAPD5(+):14bp before exon 4	Intron of FANCA(-):420bp before exon 4		GRCh37	DELETION	10	33	Antisense Fusion	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.284-420:FANCA_chr16:g.50248117del	yes	unknown	39629782	333867	146188	0	33
P-0017426-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89829147	89833521	Intron of FANCA(-):717bp before exon 29	Intron of FANCA(-):27bp after exon 27		GRCh37	DELETION	10	10	Deletion of 1 exon : in frame	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.2779-717_c.2601+28del	yes	unknown	4374	2058	4311	0	10
P-0040742-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89845570	89875017	Intron of FANCA(-):159bp before exon 19	Intron of FANCA(-):242bp before exon 6		GRCh37	DELETION	0	5	Deletion of 13 exons : out of frame	IMPPRECISE	3to5	FANCA (NM_000135) rearrangement: c.523-242:FANCA_chr16:g.89845570del	yes	unknown	29447	18826	11895	0	5
P-0068811-T02-IM7	SOMATIC	FANCA	FANCA	16	16	89805829	89883951	Intron of FANCA(-):56bp after exon 40	Promoter of FANCA(-):80Kb from tx start		GRCh37	DELETION	6	3	Deletion within transcript	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.4010+57:FANCA_chr16:g.89883951del	yes	unknown	78122	53752	63884	0	3
P-0015075-T01-IM6	SOMATIC	FANCA	FBXO31	16	16	87390021	89838177	Intron of FBXO31(-): 4Kb after exon 2	Exon 23 of FANCA(-)		GRCh37	INVERSION			FANCA-FBXO31 Fusion	PRECISE	3to3	FANCA (NM_000135) - FBXO31 (NM_024735) rearrangement: c.2060:FANCA_c.412+3880:FBXO31inv			2448156	141356	140563	0	12
P-0013000-T01-IM5	SOMATIC	FANCA	TCF25	16	16	89838310	89954326	Intron of FANCA(-): 88bp before exon 23	Intron of TCF25(+): 201bp after exon 5		GRCh37	DELETION	25	21	FANCA-intragenic	PRECISE	3to5	FANCA (NM_000135) Rearrangement :  c.2015-88:FANCA_c.614+201:TCF25del	yes	unknown	116016	48295	34975	0	18
P-0047105-T01-IM6	SOMATIC	FANCA	ANO6	16	12	89845139	45878043	Intron of FANCA(-):69bp after exon 20	IGR: 192Kb before ANO6(+)		GRCh37	TRANSLOCATION	10	11	FANCA-intragenic	PRECISE	5to3	FANCA (NM_000135) rearrangement: t(12;16)(q12;q24.3)(chr12:g.45878043::chr16:g.89845139)	yes	unknown	0	0	0	0	11
P-0054356-T01-IM6	SOMATIC	FANCA	AFG3L1P	16	16	89805872	90048839	Intron of FANCA(-):13bp after exon 40	5-UTR of AFG3L1P(+):14Kb before coding start		GRCh37	DELETION	10	6	FANCA-intragenic	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.4010+14:FANCA_chr16:g.90048839del	yes	unknown	242967	56752	110101	0	11
P-0058110-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89810016	89858417	Intron of FANCA(-):670bp before exon 37	Exon 13 of FANCA(-)		GRCh37	INVERSION	10	13	FANCA-intragenic	PRECISE	3to3	FANCA (NM_000135) rearrangement: c.1143_c.3627-670inv	yes	unknown	48401	40336	59310	0	13
P-0070199-T01-IM7	SOMATIC	FANCA	SPIRE2	16	16	89859167	89910972	Intron of FANCA(-):212bp before exon 12	Intron of SPIRE2(+):757bp before exon 2		GRCh37	DELETION	10	10	FANCA-intragenic	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.1007-212:FANCA_chr16:g.89910972del	yes	unknown	51805	14121	16725	0	12
P-0033749-T01-IM6	SOMATIC	FANCA		16	16	87145722	89813221	IGR: 54Kb before LOC440390(+)	Intron of FANCA(-):17bp after exon 34		GRCh37	DELETION			FANCA-intragenic	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.3408+18:FANCA_chr16:g.87145722del			2667499	65361	86795	0	284
P-0010247-T01-IM5	SOMATIC	FANCA	CDCA8	16	1	89828353	38170600	Intron of FANCA(-): 4bp after exon 29	Intron of CDCA8(+): 513bp before exon 9		GRCh37	TRANSLOCATION	12	9	Protein fusion: in frame (FANCA-CDCA8)	PRECISE	5to5	FANCA (NM_000135) - CDCA8 (NM_018101) rearrangement: t(1;16)(p34.3;q24.3)(chr1:g.38170600::chr16:g.89828353)	yes	unknown	0	0	0	0	9
P-0073863-T01-IM7	SOMATIC	FANCA	DBNDD1	16	16	89851395	90082599	Intron of FANCA(-):23bp before exon 15	Intron of DBNDD1(-):3Kb after exon 1		GRCh37	DUPLICATION	7	3	Protein Fusion: out of frame  {FANCA:DBNDD1}	PRECISE	5to3	FANCA (NM_000135) - DBNDD1 (NM_001042610) rearrangement: c.1360-23:FANCA_chr16:c.31+3120:DBNDD1dup	yes	unknown	231204	17761	16886	0	3
P-0020008-T02-IM6	SOMATIC	FANCA		16	11	89874616	70388851	Intron of FANCA(-):85bp after exon 6	Intron of SHANK2(-):40Kb before exon 3		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {FANCA:SHANK2}	PRECISE	5to3	FANCA (NM_000135) rearrangement: t(11,16)(q13.3,q24.3)(chr11:g.70388851::chr16:g.89874616)			0	0	0	0	15
P-0054401-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89737213	89824983	Promoter of SPATA33(+):13Kb from tx start	Intron of FANCA(-):1bp after exon 30		GRCh37	INVERSION	10	36	Transcript Fusion {FANCA:SPATA33}	PRECISE	5to5	FANCA (NM_000135) rearrangement: c.2981+2:FANCA_chr16:g.89737213inv	yes	unknown	87770	26508	15878	0	38
P-0020755-T01-IM6	SOMATIC	FANCC	FANCC	9	9	97870621	97873846	Intron of FANCC(-):1Kb before exon 14	Exon 13 of FANCC(-)		GRCh37	DELETION	10	32	Deletion within transcript : mid-exon	PRECISE	3to5	FANCC (NM_000136) rearrangement: c.1228_c.1330-1070del	yes	unknown	3225	2899	1398	0	33
P-0077891-T01-IM7	SOMATIC	FANCC	AKR1B1	9	7	97864078	134115686	Exon 15 of FANCC(-)	IGR: 11Kb before AKR1B1(-)		GRCh37	TRANSLOCATION	10	32	FANCC-intragenic	PRECISE	5to3	FANCC (NM_000136) rearrangement: t(7;9)(q33;q22.32)(chr7:g.134115686::chr9:g.97864078)	yes	unknown	0	0	0	0	33
P-0007842-T01-IM5	SOMATIC	FAR2	KDR	12	4	29059026	55970822	IGR: 318Kb before FAR2(+)	Exon 13 of KDR(-)		GRCh37	TRANSLOCATION	10	14	KDR-FAR2 fusion	PRECISE	5to5	FAR2 (NM_018099) - KDR (NM_002253.2) translocation : t(12,4)(p11.22; q12)(chr12:g.29059026::chr4:g.55970822)	yes	unknown	0	0	0	0	13
P-0034763-T01-IM6	SOMATIC	FAT		4	4	187524720	187532059	Exon 19 of FAT1(-)	Intron of FAT1(-):480bp after exon 14		GRCh37	INVERSION			FAT-intragenic	PRECISE	3to3	FAT (NM_005245) Rearrangement : c.9853+481_c.10960inv			7339	10711	12174	0	55
P-0023532-T01-IM6	SOMATIC	FAT1	FAM149A	4	4	187081976	187557755	Intron of FAM149A(+):2Kb before exon 9	Exon 5 of FAT1(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	FAT1 (NM_005245) - FAM149A (NM_001006655) rearrangement: c.3956:FAT1_c.730-2023:FAM149Adel			475779	91315	48046	0	54
P-0043253-T01-IM6	SOMATIC	FAT1		4	4	186320655	187630510	Intron of ANKRD37(+):68bp before exon 4	Exon 2 of FAT1(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.472:FAT1_chr4:g.186320655del			1309855	79780	76388	0	31
P-0012566-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187554983	187612982	Intron of FAT1(-): 6bp before exon 7	Intron of FAT1(-): 15Kb after exon 2		GRCh37	DELETION	13	9	Deletion of 4 exons: in frame	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.3265+14735_c.4184-6del	yes	unknown	57999	9014	8053	0	9
P-0020639-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187624671	187629031	Intron of FAT1(-):3Kb after exon 2	Exon 2 of FAT1(-)		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.1951_c.3265+3046del	yes	unknown	4360	11536	12847	0	11
P-0022306-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187555378	187557342	Intron of FAT1(-):401bp before exon 7	Exon 6 of FAT1(-)		GRCh37	DELETION	10	17	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) Rearrangement: c.4020_c.4184-401del	yes	unknown	1964	1312	423	0	17
P-0018607-T03-IM6	SOMATIC	FAT1	FAT1	4	4	187539453	187550606	Exon 10 of FAT1(-)	Intron of FAT1(-):689bp before exon 8		GRCh37	DELETION	10	74	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) Rearrangement: c.4324-689_c.8287del.	yes	unknown	11153	17993	15959	0	80
P-0041855-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187524578	187591327	Exon 19 of FAT1(-)	Intron of FAT1(-):7Kb before exon 3		GRCh37	DELETION	10	35	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.3266-6560_c.11102del	yes	unknown	66749	42820	32419	0	37
P-0048174-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187628226	187630334	Exon 2 of FAT1(-)	Exon 2 of FAT1(-)		GRCh37	DELETION	10	2	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.648_c.2756del	yes	unknown	2108	10717	9739	0	2
P-0050855-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187621641	187629168	Intron of FAT1(-):6Kb after exon 2	Exon 2 of FAT1(-)		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.1814_c.3265+6076del	yes	unknown	7527	8489	9206	0	16
P-0051780-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187514549	187629330	Intron of FAT1(-):2Kb after exon 26	Exon 2 of FAT1(-)		GRCh37	DELETION	10	45	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.1652_c.13138+2294del	yes	unknown	114781	55597	76181	0	46
P-0056305-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187522579	187524056	Exon 21 of FAT1(-)	Exon 20 of FAT1(-)		GRCh37	DELETION	9	3	Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.11482+1_c.11484del	yes	unknown	1477	872	566	0	3
P-0055025-T02-IM6	SOMATIC	FAT1		4	4	187535431	187611707	Exon 12 of FAT1(-)	Intron of FAT1(-):16Kb after exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	FAT1 (NM_005245) rearrangement:  c.9143_c.3265+16010del			76276	36156	37261	0	16
P-0001428-T01-IM3	SOMATIC	FAT1	FAT1	4	4	187524425	187628066	Exon 19 of FAT1(-)	Exon 2 of FAT1(-)		GRCh37	DELETION	7	5	Deletion within transcript: mid-exon	PRECISE	3to5	None	yes	unknown	103641	106174	52677	0	5
P-0045893-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187625767	187630709	Intron of FAT1(-):2Kb after exon 2	Exon 2 of FAT1(-)		GRCh37	DUPLICATION	0	25	Duplication within transcript : mid-exon	IMPPRECISE	5to3	FAT1 (NM_005245) rearrangement: c.273_c.3265+1950dup	yes	unknown	4942	15740	18733	0	27
P-0069200-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187527608	187535446	Intron of FAT1(-):241bp before exon 17	Exon 12 of FAT1(-)		GRCh37	DUPLICATION	10	11	Duplication within transcript : mid-exon	PRECISE	5to3	FAT1 (NM_005245) rearrangement: c.9128_c.10207-241dup	yes	unknown	7838	5571	10498	0	11
P-0083687-T01-IM7	SOMATIC	FAT1		4	4	187521178	187602515	Exon 22 of FAT1(-)	Intron of FAT1(-):18Kb before exon 3		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	FAT1 (NM_005245) rearrangement: c.3266-17748_c.11977dup			81337	70008	91759	0	19
P-0023023-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187500064	187524752	IGR: 9Kb before FAT1(-)	Exon 19 of FAT1(-)		GRCh37	DELETION	10	8	FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.10928_chr4:g.187500064del	yes	unknown	24688	24276	20764	0	14
P-0026272-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187525022	187636565	Exon 19 of FAT1(-)	5-UTR of FAT1(-):127Kb before coding start		GRCh37	INVERSION	10	10	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.10658:FAT1_chr4:g.187636565inv	yes	unknown	111543	65983	28396	0	10
P-0032153-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187509113	187509904	3-UTR of FAT1(-):632bp after coding stop	Exon 27 of FAT1(-)		GRCh37	INVERSION	10	18	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.13609:FAT1_chr4:g.187509113inv	yes	unknown	791	594	562	0	18
P-0038241-T01-IM6	SOMATIC	FAT1	FAT1	4	4	182881463	187522494	IGR: 178Kb before LOC90768(-)	Exon 21 of FAT1(-)		GRCh37	INVERSION	10	18	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.11569:FAT1_chr4:g.182881463inv	yes	unknown	4641031	20004	23388	0	18
P-0046945-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187558134	187625607	Intron of FAT1(-):66bp before exon 5	Intron of FAT1(-):2Kb after exon 2		GRCh37	INVERSION	10	12	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.3265+2110_c.3643-66inv	yes	unknown	67473	1740	3057	0	12
P-0048500-T01-IM6	SOMATIC	FAT1	LOC339975	4	4	187531056	187868727	Exon 15 of FAT1(-)	IGR: 357Kb before LOC339975(-)		GRCh37	DELETION	10	40	FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.9967:FAT1_chr4:g.187868727del	yes	unknown	337671	34470	48894	0	41
P-0046175-T02-IM6	SOMATIC	FAT1	LOC339975	4	4	187630870	188179915	Exon 2 of FAT1(-)	IGR: 45Kb before LOC339975(-)		GRCh37	INVERSION	10	7	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.112:FAT1_chr4:g.188179915inv	yes	unknown	549045	750	1036	0	7
P-0053172-T01-IM6	SOMATIC	FAT1	FAT1	21	4	32199147	187510293	Promoter of KRTAP7-1(-):2Kb from tx start	Exon 27 of FAT1(-)		GRCh37	TRANSLOCATION	10	39	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: t(4;21)(q35.2;q22.11)(chr4:g.187510293::chr21:g.32199147)	yes	unknown	0	0	0	0	38
P-0065410-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187560983	187562178	Intron of FAT1(-):46bp before exon 4	Intron of FAT1(-):1Kb before exon 4		GRCh37	INVERSION	6	2	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.3581-1241_c.3581-46inv	yes	unknown	1195	237	415	0	2
P-0071441-T01-IM7	SOMATIC	FAT1	FAT1	4	4	144541617	187518842	Intron of FREM3(-):572bp after exon 5	Exon 24 of FAT1(-)		GRCh37	INVERSION	10	10	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.12362:FAT1_chr4:g.144541617inv	yes	unknown	42977225	115908	163103	0	10
P-0074943-T01-IM7	SOMATIC	FAT1	LOC339975	4	4	187628455	188034703	Exon 2 of FAT1(-)	IGR: 191Kb before LOC339975(-)		GRCh37	INVERSION	10	4	FAT1-intragenic	PRECISE	3to3	FAT1 (NM_005245) rearrangement: c.2527:FAT1_chr4:g.188034703inv	yes	unknown	406248	14508	4764	0	3
P-0010126-T01-IM5	SOMATIC	FAT1		4	4	139877853	187539170	IGR: 59Kb before CCRN4L(+)	Exon 10 of FAT1(-)		GRCh37	DELETION			FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) rearrangement : c.8570:FAT1_chr4:g.139877853del			47661317	201916	124459	0	30
P-0016714-T01-IM6	SOMATIC	FAT1		4	4	187538386	190223782	Intron of FAT1(-):31bp before exon 11	IGR: 357Kb before LINC01262(+)		GRCh37	DELETION			FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) Rearrangement : c.8879-31:FAT1_chr4:g.190223782del			2685396	74639	85816		
P-0018374-T01-IM6	SOMATIC	FAT1		4	4	187311035	187542396	3-UTR of F11-AS1(-):111Kb after coding stop	Exon 10 of FAT1(-)		GRCh37	DELETION			FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) Rearrangement : c.5344:FAT1_chr4:g.187311035del			231361	57932	63623	0	6
P-0023910-T01-IM6	SOMATIC	FAT1		4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20		GRCh37	INVERSION			FAT1-intragenic	PRECISE	5to5	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv			158310607	671517	487574	0	3
P-0025153-T01-IM6	SOMATIC	FAT1		4	4	185165018	187510116	IGR: 97Kb before LOC728175(-)	Exon 27 of FAT1(-)		GRCh37	DUPLICATION			FAT1-intragenic	PRECISE	5to3	FAT1 (NM_005245) rearrangement: chr4:g.185165018_c.13397dup			2345098	2631	5452	0	29
P-0030980-T01-IM6	SOMATIC	FAT1		4	4	187557372	187948271	Exon 6 of FAT1(-)	IGR: 277Kb before LOC339975(-)		GRCh37	DELETION			FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.3990:FAT1_chr4:g.187948271del			390899	18856	26349	0	5
P-0048115-T01-IM6	SOMATIC	FAT1		4	4	187335856	187549779	3-UTR of F11-AS1(-):86Kb after coding stop	Exon 8 of FAT1(-)		GRCh37	DELETION			FAT1-intragenic	PRECISE	3to5	FAT1 (NM_005245) rearrangement: c.4462:FAT1_chr4:g.187335856del			213923	45460	62922	0	25
P-0083561-T01-IM7	SOMATIC	FAT1		4	4	157085173	187540767	IGR: 240Kb before CTSO(-)	Exon 10 of FAT1(-)		GRCh37	INVERSION			FAT1-intragenic	PRECISE	5to5	FAT1 (NM_005245) rearrangement: c.6973:FAT1_chr4:g.157085173inv			30455594	141287	117716	0	14
P-0052721-T01-IM6	SOMATIC	FAT1	CACNA2D3	4	3	187628730	54186441	Exon 2 of FAT1(-)	Intron of CACNA2D3(+):29Kb after exon 2		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {FAT1:CACNA2D3}	PRECISE	5to5	FAT1 (NM_005245) - CACNA2D3 (NM_018398) rearrangement: t(3;4)(p21.1;q35.2)(chr3:g.54186441::chr4:g.187628730)			0	0	0	0	11
P-0037682-T01-IM6	SOMATIC	FAT1	PCGF3	4	4	756508	187518253	Intron of PCGF3(+):1Kb after exon 9	Exon 25 of FAT1(-)		GRCh37	INVERSION	9	4	Protein Fusion: mid-exon  {FAT1:PCGF3}	PRECISE	5to5	FAT1 (NM_005245) - PCGF3 (NM_006315) Rearrangement : c.12441:FAT1_c.600+1304:PCGF3inv	yes	unknown	186761745	276829	355127	0	4
P-0059358-T01-IM7	SOMATIC	FAT1	FAT1	4	4	153705513	187520970	5-UTR of ARFIP1(+):45Kb before coding start	Intron of FAT1(-):81bp after exon 22		GRCh37	INVERSION	10	42	Transcript Fusion {FAT1:ARFIP1}	PRECISE	5to5	FAT1 (NM_005245) rearrangement: c.12103+82:FAT1_chr4:g.153705513inv	yes	unknown	33815457	60107	70842	0	44
P-0075873-T01-IM7	SOMATIC	FBLIM1	SPEN	1	1	16094368	16200525	Intron of FBLIM1(+):3Kb before exon 2	Intron of SPEN(+):894bp after exon 2		GRCh37	DELETION	10	15	Protein Fusion: out of frame  {FBLIM1:SPEN}	PRECISE	3to5	FBLIM1 (NM_017556) - SPEN (NM_015001) rearrangement: c.438+310:FBLIM1_c.404+894:SPENdel	yes	unknown	106157	4973	3670	0	15
P-0061352-T01-IM7	SOMATIC	FBXL17	APC	5	5	107525089	112111254	Intron of FBXL17(-):3Kb before exon 6	Intron of APC(+):71bp before exon 5		GRCh37	INVERSION	10	7	Protein Fusion: out of frame  {FBXL17:APC}	PRECISE	5to5	FBXL17 (NM_001163315) - APC (NM_000038) rearrangement: c.1615-3141:FBXL17_c.423-72:APCinv	yes	unknown	4586165	17506	24158	0	7
P-0048892-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37532418	37682432	Intron of FBXL20(-):25Kb after exon 1	Exon 13 of CDK12(+)		GRCh37	INVERSION	10	16	Protein Fusion: mid-exon  {FBXL20:CDK12}	PRECISE	5to5	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.42+25196:FBXL20_c.3623:CDK12inv	yes	unknown	150014	28857	298909	0	23
P-0036553-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37433697	37619062	Intron of FBXL20(-):2Kb before exon 9	Exon 1 of CDK12(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {FBXL20:CDK12}	PRECISE	5to5	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.697-2344:FBXL20_c.738:CDK12inv			185365	3209	16513	0	7
P-0014403-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37508832	37682171	Intron of FBXL20(-): 9Kb before exon 2	Exon 13 of CDK12(+)		GRCh37	INVERSION	9	6	Protein fusion: mid-exon (FBXL20-CDK12)	PRECISE	5to5	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.43-9338:FBXL20_c.3362:CDK12inv	yes	unknown	173339	23214	17990	0	6
P-0068481-T01-IM7	SOMATIC	FBXO11	MSH6	2	2	48018216	48044638	Exon 2 of MSH6(+)	Intron of FBXO11(-):1Kb after exon 16		GRCh37	INVERSION	10	46	Protein Fusion: mid-exon  {FBXO11:MSH6}	PRECISE	5to5	FBXO11 (NM_001190274) - MSH6 (NM_000179) rearrangement: c.2006+1280:FBXO11_c.411:MSH6inv	yes	unknown	26422	29853	56475	0	57
P-0054225-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153247036	153251419	Intron of FBXW7(-):121bp after exon 10	Intron of FBXW7(-):464bp after exon 7		GRCh37	DUPLICATION	10	30	Duplication of 3 exons : in frame	PRECISE	5to3	FBXW7 (NM_033632) rearrangement: c.1122+465_c.1644+122dup	yes	unknown	4383	3471	6494	0	30
P-0063855-T01-IM7	SOMATIC	FBXW7	FBXW7	4	4	153246842	153271440	Intron of FBXW7(-):315bp after exon 10	Intron of FBXW7(-):164bp before exon 3		GRCh37	DUPLICATION	10	8	Duplication of 8 exons : in frame	PRECISE	5to3	FBXW7 (NM_033632) rearrangement: c.502-164_c.1644+316dup	yes	unknown	24598	12174	19552	0	9
P-0029762-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153244282	153246040	Exon 12 of FBXW7(-)	Intron of FBXW7(-):494bp before exon 11		GRCh37	DUPLICATION	8	6	Duplication within transcript : mid-exon	PRECISE	5to3	FBXW7 (NM_033632) rearrangement: c.1645-494_c.1875dup	yes	unknown	1758	1841	2851	0	6
P-0022800-T01-IM6	SOMATIC	FCAR	PTPRS	19	19	5273567	55393762	Exon 4 of PTPRS(-)	Intron of FCAR(+):3Kb before exon 2		GRCh37	INVERSION			Protein Fusion: mid-exon  {FCAR:PTPRS}	PRECISE	3to3	FCAR (NM_002000) - PTPRS (NM_002850) Rearrangement :  c.71-2885:FCAR_c.265:PTPRSinv			50120195	1350156	1528787	0	36
P-0039584-T01-IM6	SOMATIC	FER1L6	AGO2	8	8	125053484	141566388	Intron of FER1L6(+):1Kb after exon 20	Intron of AGO2(-):3bp before exon 9		GRCh37	INVERSION	10	73	Protein Fusion: in frame  {FER1L6:AGO2}	PRECISE	3to3	FER1L6 (NM_001039112) - AGO2 (NM_012154) rearrangement: c.2589+1237:FER1L6_c.1027-3:AGO2inv	yes	unknown	16512904	50197	74940	0	72
P-0072345-T01-IM7	SOMATIC	FGF19	FGF19	11	11	69518531	69542032	Exon 1 of FGF19(-)	IGR: 29Kb before FGF19(-)		GRCh37	DELETION	10	18	FGF19-intragenic	PRECISE	3to5	FGF19 (NM_005117) rearrangement: c.114:FGF19_chr11:g.69542032del	yes	unknown	23501	1045	569	0	19
P-0048711-T01-IM6	SOMATIC	FGF19	CPT1A	11	11	68572320	69518465	Intron of CPT1A(-):751bp before exon 5	Exon 1 of FGF19(-)		GRCh37	DELETION	10	9	Protein Fusion: mid-exon  {FGF19:CPT1A}	PRECISE	3to5	FGF19 (NM_005117) - CPT1A (NM_001876) rearrangement: c.180:FGF19_c.454-751:CPT1Adel	yes	unknown	946145	19272	25188	0	9
P-0041626-T01-IM6	SOMATIC	FGF3	KCNE3	11	11	69627474	74177470	Intron of FGF3(-):2Kb before exon 3	5-UTR of KCNE3(-):9Kb before coding start		GRCh37	INVERSION	10	379	Antisense Fusion	PRECISE	5to5	FGF3 (NM_005247) rearrangement: c.325-2006:FGF3_chr11:g.74177470inv	yes	unknown	4549996	74364	71175	0	541
P-0049736-T01-IM6	SOMATIC	FGF3	FGF3	13	11	27386379	69630985	IGR: 57Kb before GPR12(-)	Intron of FGF3(-):102bp after exon 2		GRCh37	TRANSLOCATION	10	46	FGF3-intragenic	PRECISE	5to5	FGF3 (NM_005247) rearrangement: t(11;13)(q13.3;q12.13)(chr11:g.69630985::chr13:g.27386379)	yes	unknown	0	0	0	0	46
P-0061635-T02-IM7	SOMATIC	FGF4	FGF4	11	11	69589350	69590251	Intron of FGF4(-):162bp after exon 1	Promoter of FGF4(-):2Kb from tx start		GRCh37	INVERSION	0	4	Antisense Fusion	IMPPRECISE	5to5	FGF4 (NM_002007) rearrangement: c.340+163:FGF4_chr11:g.69590251inv	yes	unknown	901	5600	6862	0	4
P-0052369-T02-IM6	SOMATIC	FGF4	FGF4	11	11	69567257	69588925	IGR: 21Kb before FGF4(-)	Intron of FGF4(-):30bp before exon 2		GRCh37	DUPLICATION	10	14	FGF4-intragenic	PRECISE	5to3	FGF4 (NM_002007) rearrangement: c.341-30:FGF4_chr11:g.69567257dup	yes	unknown	21668	5539	6948	0	18
P-0080120-T01-IM7	SOMATIC	FGF4	FGF4	11	11	64981780	69592109	Intron of SLC22A20(+):16bp before exon 2	Promoter of FGF4(-):4Kb from tx start		GRCh37	INVERSION	10	7	Transcript Fusion {SLC22A20:FGF4}	PRECISE	3to3	FGF4 (NM_002007) rearrangement: c.-2257:FGF4_c.382-17:SLC22A20inv	yes	unknown	4610329	56462	112746	0	7
P-0008691-T01-IM5	SOMATIC	FGFR1		8	8	38285753	38294936	Intron of FGFR1(-): 111bp after exon 3	Intron of FGFR1(-): 3Kb after exon 3		GRCh37	INVERSION			Antisense fusion	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement: c.191-7470_c.541+117inv			9183	6794	7597	0	246
P-0055520-T01-IM6	SOMATIC	FGFR1		8	8	38271586	124087696	Intron of FGFR1(-):45bp before exon 18	Intron of TBC1D31(+):2Kb before exon 2		GRCh37	DUPLICATION			Antisense Fusion	PRECISE	5to3	FGFR1 (NM_001174067) rearrangement: c.2280-45:FGFR1_chr8:g.124087696dup			85816110	186853	355795	0	51
P-0047742-T01-IM6	SOMATIC	FGFR1		8	8	38272034	38273835	Intron of FGFR1(-):42bp after exon 16	Intron of FGFR1(-):257bp before exon 14		GRCh37	DELETION			Deletion of 3 exons : out of frame	PRECISE	3to5	FGFR1 (NM_001174067) rearrangement: c.1757-257_c.2141+43del			1801	5195	18033	0	13
P-0014932-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271825	38274213	Intron of FGFR1(-): 18bp before exon 15	Intron of FGFR1(-): 611bp after exon 11		GRCh37	DELETION	47	43	Deletion of 3 exons: out of frame	PRECISE	3to5	FGFR1 (NM_001174067) Rearrangement : c.1756+611_c.2142-18del	yes	unknown	2388	5698	5204	0	37
P-0020157-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38287302	38288716	Exon 4 of FGFR1(-)	Intron of FGFR1(-):1Kb before exon 4		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	FGFR1 (NM_001174067) rearrangement: c.191-1250_c.355del	yes	unknown	1414	1607	1152	0	17
P-0049343-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38280792	38282228	Intron of FGFR1(-):1Kb after exon 8	Intron of FGFR1(-):11bp before exon 8		GRCh37	DUPLICATION	5	5	Duplication of 1 exon : out of frame	PRECISE	5to3	FGFR1 (NM_001174067) rearrangement: c.839-11_c.1029+1235dup	yes	unknown	1436	3944	963	0	5
P-0056623-T01-IM6	SOMATIC	FGFR1		8	8	38285913	38299186	Exon 5 of FGFR1(-)	Intron of FGFR1(-):12Kb before exon 4		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	FGFR1 (NM_001174067) rearrangement: c.191-11720_c.498dup			13273	4578	10646	0	109
P-0062813-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38276145	38281775	Intron of FGFR1(-):254bp before exon 11	Intron of FGFR1(-):251bp after exon 8		GRCh37	INVERSION	10	46	FGFR1-intragenic	PRECISE	3to3	FGFR1 (NM_001174067) rearrangement: c.1029+252_c.1378-254inv	yes	unknown	5630	6528	7846	0	45
P-0064520-T02-IM7	SOMATIC	FGFR1	SFRP1	8	8	38283720	40924764	Exon 7 of FGFR1(-)	IGR: 195Kb before SFRP1(-)		GRCh37	DELETION	0	6	FGFR1-intragenic	IMPPRECISE	3to5	FGFR1 (NM_001174067) rearrangement: c.758:FGFR1_chr8:g.40924764del	yes	unknown	2641044	17958	30628	0	6
P-0060891-T02-IM7	SOMATIC	FGFR1	FGFR1	13	8	84244662	38271631	IGR: 207Kb before SLITRK1(-)	Intron of FGFR1(-):38bp after exon 17		GRCh37	TRANSLOCATION	10	30	FGFR1-intragenic	PRECISE	5to3	FGFR1 (NM_001174067) rearrangement: t(8;13)(p11.23;q31.1)(chr8:g.38271631::chr13:g.84244662)	yes	unknown	0	0	0	0	30
P-0008406-T01-IM5	SOMATIC	FGFR1		8	8	38283762	38577463	Exon 5 of FGFR1(-)	IGR: 8Kb before TACC1(+)		GRCh37	INVERSION			FGFR1-intragenic	PRECISE	3to3	FGFR1 (NM_001174067) rearrangement: chr8:g.38577463_c.716inv			293701	15160	15865	0	52
P-0017046-T01-IM6	SOMATIC	FGFR1		8	8	36454836	38287309	IGR: 187Kb before KCNU1(+)	Exon 4 of FGFR1(-)		GRCh37	INVERSION			FGFR1-intragenic	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement: c.348:FGFR1_chr8:g.36454836inv			1832473	0	128		
P-0018197-T01-IM6	SOMATIC	FGFR1		8	8	33895943	38274836	IGR: 447Kb before DUSP26(-)	Exon 13 of FGFR1(-)		GRCh37	INVERSION			FGFR1-intragenic	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement : g.33895943_c.1744:FGFR1inv			4378893	74204	115777	0	9
P-0022456-T01-IM6	SOMATIC	FGFR1		8	2	38276953	174604210	Intron of FGFR1(-):97bp after exon 10	IGR: 167Kb before SP3(-)		GRCh37	TRANSLOCATION			FGFR1-intragenic	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement: t(2;8)(q31.1;p11.23)(chr2:g.174604210::chr8:g.38276953)			0	0	0	0	39
P-0026139-T01-IM6	SOMATIC	FGFR1		8	8	32978873	38273537	IGR: 249Kb before FUT10(-)	Exon 14 of FGFR1(-)		GRCh37	DELETION			FGFR1-intragenic	PRECISE	3to5	FGFR1 (NM_001174067) Rearrangement : chr8:g.32978873_c.1798del			5294664	53306	52208	0	20
P-0043556-T01-IM6	SOMATIC	FGFR1		8	8	30003025	38285947	3-UTR of MIR548O2(-):105Kb after coding stop	Exon 5 of FGFR1(-)		GRCh37	INVERSION			FGFR1-intragenic	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement: c.464:FGFR1_chr8:g.30003025inv			8282922	80020	91553	0	9
P-0054139-T02-IM6	SOMATIC	FGFR1		8	8	38274827	38331658	Exon 13 of FGFR1(-)	IGR: 37Kb before C8orf86(-)		GRCh37	INVERSION			FGFR1-intragenic	PRECISE	5to5	FGFR1 (NM_001174067) rearrangement: c.1753:FGFR1_chr8:g.38331658inv			56831	24406	37866	1	242
P-0015196-T01-IM6	SOMATIC	FGFR1		8	8	34596848	38271425	IGR: 496Kb before UNC5D(+)	Intron of FGFR1(-): 11bp after exon 16		GRCh37	DELETION			FGFR1-intragenic	PRECISE	3to5	FGFR1 (NM_001174067) rearrangement: chr8:g.34596848_c.2385+11del			3674577	68601	86639	0	20
P-0023866-T01-IM6	SOMATIC	FGFR1	ACPP	8	3	38287577	132078761	Intron of FGFR1(-):111bp before exon 4	Intron of ACPP(+):3Kb after exon 10		GRCh37	TRANSLOCATION	10	16	Protein Fusion: in frame  {ACPP:FGFR1}	PRECISE	3to3	ACPP (NM_001134194) -FGFR1 (NM_001174067) rearrangement: t(3;8)(q22.1;p11.23)(chr3:g.132078761::chr8:g.38287577)	yes	unknown	0	0	0	0	15
P-0087373-T01-IM7	SOMATIC	FGFR1	LSM1	8	8	38028160	38282253	Intron of LSM1(-):725bp before exon 3	Intron of FGFR1(-):36bp before exon 8		GRCh37	DELETION			Protein Fusion: in frame  {FGFR1:LSM1}	PRECISE	3to5	FGFR1 (NM_001174067) - LSM1 (NM_014462) rearrangement: c.839-36:FGFR1_c.116-725:LSM1del			254093	54780	157165	0	55
P-0004600-T01-IM5	SOMATIC	FGFR1	ACPP	8	3	38286054	132081259	Intron of FGFR1(-): 101bp before exon 3	Intron of ACPP(+): 5Kb before exon 11		GRCh37	TRANSLOCATION	22	30	Protein fusion: in frame (ACPP-FGFR1)	PRECISE	3to3	ACPP (NM_001134194) - FGFR1 (NM_001174067) rearrangement :t(3;8)(3q22.1;8p11.33)(chr3:g.132081259::chr8:g.38286054)	yes	unknown	0	0	0	0	28
P-0031403-T01-IM6	SOMATIC	FGFR1	ADAM32	8	8	38277124	39070929	Exon 10 of FGFR1(-)	Intron of ADAM32(+):2Kb after exon 12		GRCh37	INVERSION	10	85	Protein Fusion: mid-exon  {FGFR1:ADAM32}	PRECISE	5to5	FGFR1 (NM_001174067) - ADAM32 (NM_145004) Rearrangement : c.1304:FGFR1_c.1233+2086:ADAM32	yes	unknown	793805	21017	154019	0	97
P-0055303-T02-IM6	SOMATIC	FGFR1	TACC1	8	8	38274883	38604425	Exon 13 of FGFR1(-)	5-UTR of TACC1(+):73Kb before coding start		GRCh37	INVERSION	10	49	Protein Fusion: mid-exon  {FGFR1:TACC1}	PRECISE	5to5	FGFR1 (NM_001174067) - TACC1 (NM_001146216.2) fusion: c.1697:FGFR1_c.-425+18236:TACC1inv	yes	unknown	329542	20129	232914	0	56
P-0025390-T01-IM6	SOMATIC	FGFR1	WHSC1L1	8	8	38201702	38274750	Intron of WHSC1L1(-):3Kb after exon 2	Intron of FGFR1(-):73bp after exon 13		GRCh37	DELETION			Protein Fusion: out of frame  {FGFR1:WHSC1L1}	IMPPRECISE	3to5	FGFR1 (NM_001174067) - WHSC1L1 (NM_023034) rearrangement: c.1756+74:FGFR1_c.675+3313:WHSC1L1del			73048	15563	144027	0	5
P-0068917-T01-IM7	SOMATIC	FGFR1	RNF5P1	8	8	38275631	38459075	Intron of FGFR1(-):114bp after exon 11	Promoter of RNF5P1(-):1Kb from tx start		GRCh37	DELETION	10	51	Transcript Fusion {RNF5P1:FGFR1}	PRECISE	3to5	FGFR1 (NM_001174067) rearrangement: c.1523+115:FGFR1_chr8:g.38459075del	yes	unknown	183444	20511	23563	1	52
P-0034590-T01-IM6	SOMATIC	FGFR2	ST8SIA6	10	10	17392954	123242595	Intron of ST8SIA6(-):9Kb after exon 4	Intron of FGFR2(-):616bp after exon 17		GRCh37	INVERSION	5	4	Antisense Fusion	PRECISE	5to5	FGFR2 (NM_000141) - ST8SIA6(NM_001004470) rearrangement: c.2301+617:FGFR2_c.377+8559:ST8SIA6inv	yes	unknown	105849641	226710	149016	0	4
P-0004286-T01-IM5	SOMATIC	FGFR2	FGFR2	10	10	123240290	123264091	Intron of FGFR2(-): 755bp before exon 18	Intron of FGFR2(-): 636bp before exon 9		GRCh37	INVERSION	108	102	Antisense fusion	PRECISE	5to5	FGFR2 (NM_000141) rearrangement : c.1288-636_2302-755inv	yes	unknown	23801	36950	76012	0	242
P-0077429-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	123247661	123258460	Intron of FGFR2(-):34bp before exon 14	Intron of FGFR2(-):341bp before exon 12		GRCh37	DELETION	10	7	Deletion of 2 exons : out of frame	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.1562-341_c.1864-34del	yes	unknown	10799	3298	3202	0	7
P-0001340-T01-IM3	SOMATIC	FGFR2	FGFR2	10	10	123322745	123325207	Intron of FGFR2(-): 1Kb after exon 3	Exon 3 of FGFR2(-)		GRCh37	DUPLICATION	11	6	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	2462	7088	5595	0	6
P-0047504-T01-IM6	SOMATIC	FGFR2	ATAD1								GRCh37				FGFR2-ATAD1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR2-ATAD1 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon17 (NM_000141) and ATAD1 Exon9 (NM_032810).	yes	unknown					
P-0015432-T01-IM6	SOMATIC	FGFR2	CAT								GRCh37				FGFR2-CAT Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR2-CAT fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon17 (NM_000141) and CAT Exon2 (NM_001752).	yes	unknown					
P-0044768-T01-IM6	SOMATIC	FGFR2	DIABLO								GRCh37				FGFR2-DIABLO Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: FGFR2-DIABLO fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon17 (NM_022970) and DIABLO Exon4 (NM_019887).	yes	unknown					
P-0064319-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	122887914	123242552	IGR: 277Kb before WDR11(+)	Intron of FGFR2(-):659bp after exon 17		GRCh37	DELETION	7	3	FGFR2-intragenic	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.2301+660:FGFR2_chr10:g.122887914del	yes	unknown	354638	25898	9014	0	3
P-0077354-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	122991765	123242176	IGR: 246Kb before FGFR2(-)	Intron of FGFR2(-):1Kb after exon 17		GRCh37	INVERSION	10	7	FGFR2-intragenic	PRECISE	3to3	FGFR2 (NM_000141) rearrangement: c.2301+1036:FGFR2_chr10:g.122991765inv	yes	unknown	250411	8231	11068	0	8
P-0063040-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	123167556	123239668	IGR: 70Kb before FGFR2(-)	Intron of FGFR2(-):133bp before exon 18		GRCh37	DELETION	10	25	FGFR2-intragenic	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.2302-133:FGFR2_chr10:g.123167556del	yes	unknown	72112	3335	3113	0	25
P-0004808-T01-IM5	SOMATIC	FGFR2		10	7	123242018	93694043	Intron of FGFR2(-): 327bp before exon 17	IGR: 60Kb after BET1(-)		GRCh37	TRANSLOCATION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: t(10;7)(q26.13;q21.3)(chr10:g.123242018::chr7:g.93694043)			0	0	0	0	23
P-0006409-T01-IM5	SOMATIC	FGFR2		10	10	95246173	123242229	IGR: 4Kb after MYOF(-)	Intron of FGFR2(-): 538bp before exon 17		GRCh37	INVERSION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement : chr10:g.95246173_c.2301+983:FGFR2inv			27996056	155299	123557	0	34
P-0017831-T01-IM6	SOMATIC	FGFR2		16	10	55238062	123241224	IGR: 120Kb before IRX6(+)	Intron of FGFR2(-):2Kb before exon 18		GRCh37	TRANSLOCATION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: t(10;16)(q26.13;q12.2)(chr10:g.123241224::chr16:g.55238062)			0	0	0	0	22
P-0018785-T01-IM6	SOMATIC	FGFR2		17	10	21369673	123240775	IGR: 61Kb before KCNJ18(+)	Intron of FGFR2(-):1Kb before exon 18		GRCh37	TRANSLOCATION			FGFR2-intragenic	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: t(10;17)(q26.13;p11.2)(chr10:g.123240775::chr17:g.21369673)			0	0	0	0	260
P-0023324-T01-IM6	SOMATIC	FGFR2		10	10	123239051	123403273	3-UTR of FGFR2(-):319bp after coding stop	IGR: 97Kb before ATE1(-)		GRCh37	INVERSION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: c.*320_chr10:g.123403273inv			164222	93307	77523	0	22
P-0024183-T01-IM6	SOMATIC	FGFR2		10	1	123242818	208433127	Intron of FGFR2(-):393bp after exon 17	IGR: 238Kb before PLXNA2(-)		GRCh37	TRANSLOCATION			FGFR2-intragenic	IMPPRECISE	5to3	FGFR2 (NM_000141) Rearrangement : t(1;10)(q32.3;q26.11)(chr1:g.208433127::chr10:g.123242818)			0	0	0	0	8
P-0027759-T01-IM6	SOMATIC	FGFR2		10	10	123240454	133670877	Intron of FGFR2(-):919bp before exon 18	IGR: 66Kb before LINC01164(-)		GRCh37	INVERSION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: c.2302-919:FGFR2_chr10:g.133670877inv			10430423	57976	201178	0	180
P-0048794-T01-IM6	SOMATIC	FGFR2		10	8	123242693	34912856	Intron of FGFR2(-):518bp after exon 17	IGR: 180Kb before UNC5D(+)		GRCh37	TRANSLOCATION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: t(8;10)(p12;q26.13)(chr8:g.34912856::chr10:g.123242693)			0	0	0	0	52
P-0057045-T01-IM6	SOMATIC	FGFR2		10	10	122881463	123242134	IGR: 271Kb before WDR11(+)	Intron of FGFR2(-):1Kb after exon 17		GRCh37	DELETION			FGFR2-intragenic	IMPPRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.2301+1078:FGFR2_chr10:g.122881463del			360671	18453	17089	0	43
P-0071985-T01-IM7	SOMATIC	FGFR2		10	10	123114632	123242865	IGR: 123Kb before FGFR2(-)	Intron of FGFR2(-):346bp after exon 17		GRCh37	DUPLICATION			FGFR2-intragenic	PRECISE	5to3	FGFR2 (NM_000141) rearrangement: c.2301+347:FGFR2_chr10:g.123114632dup			128233	13263	26352	0	61
P-0073321-T01-IM7	SOMATIC	FGFR2		10	10	48406051	123239506	IGR: 7Kb before GDF2(-)	Exon 18 of FGFR2(-)		GRCh37	DELETION			FGFR2-intragenic	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.2331:FGFR2_chr10:g.48406051del			74833455	397766	412814	0	57
P-0073984-T01-IM7	SOMATIC	FGFR2		10	10	123239986	125094684	Intron of FGFR2(-):451bp before exon 18	IGR: 181Kb before BUB3(+)		GRCh37	DELETION			FGFR2-intragenic	PRECISE	3to5	FGFR2 (NM_000141) rearrangement: c.2302-451:FGFR2_chr10:g.125094684del			1854698	54241	103895	0	23
P-0084662-T02-IM7	SOMATIC	FGFR2		10	10	123238637	123240994	3-UTR of FGFR2(-):733bp after coding stop	Intron of FGFR2(-):1Kb before exon 18		GRCh37	INVERSION			FGFR2-intragenic	PRECISE	5to5	FGFR2 (NM_000141) rearrangement: c.2302-1459:FGFR2_chr10:g.123238637inv			2357	7005	26920	0	459
P-0024183-T01-IM6	SOMATIC	FGFR2	PLXNA2								GRCh37				FGFR2-PLXNA2 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR2-PLXNA2 fusion. Note: The rearrangement is a fusion between genes FGFR2 Exon17 (NM_000141.4) and PLXNA2 Exon2 (NM_025179). Note 2: The functional significance of this fusion is unknown.	yes	unknown					
P-0031242-T01-IM6	SOMATIC	FGFR2	TACC2								GRCh37				FGFR2-TACC2 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR2-TACC2 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon17 (NM_022970) and TACC2 Exon17 (NM_206862).	yes	unknown					
P-0022337-T01-IM6	SOMATIC	FGFR2	TBC1D4								GRCh37				FGFR2-TBC1D4 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: FGFR2-TBC1D4 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon17 (NM_000141) and TBC1D4 Exon2 (NM_014832).	yes	unknown					
P-0021788-T01-IM6	SOMATIC	FGFR2	VPS26A								GRCh37				FGFR2-VPS26A Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR2-VPS26A fusion. Note: The rearrangement is an in-frame fusion between genes FGFR2 Exon 17 (NM_000141.4) and VPS26A Exon 2 (NM_004896).	yes	unknown					
P-0047504-T01-IM6	SOMATIC	FGFR2	ATAD1	10	10	89523437	123241680	Intron of ATAD1(-):4Kb after exon 8	Intron of FGFR2(-):2Kb after exon 17		GRCh37	DELETION			Protein Fusion: in frame  {FGFR2:ATAD1}	PRECISE	3to5	FGFR2 (NM_000141) - ATAD1 (NM_032810) fusion: c.2301+1532:FGFR2_c.831+3993:ATAD1del			33718243	116741	279242	0	1966
P-0044768-T01-IM6	SOMATIC	FGFR2	DIABLO	12	10	122708063	123243152	Intron of DIABLO(-):995bp after exon 3	Intron of FGFR2(-):59bp after exon 17		GRCh37	TRANSLOCATION	10	334	Protein Fusion: in frame  {FGFR2:DIABLO}	PRECISE	3to5	FGFR2 (NM_000141) - DIABLO (NM_019887) fusion: t(10;12)(q26.13;q24.31)(chr10:g.123243152::chr12:g.122708063)	yes	unknown	0	0	0	5	377
P-0064855-T01-IM7	SOMATIC	FGFR2	MBIP	14	10	36787130	123240070	Intron of MBIP(-):1Kb before exon 2	Intron of FGFR2(-):535bp before exon 18		GRCh37	TRANSLOCATION	10	168	Protein Fusion: in frame  {FGFR2:MBIP}	PRECISE	3to5	FGFR2 (NM_000141) - MBIP (NM_016586) fusion: t(10;14)(q26.13;q13.3)(chr10:g.123240070::chr14:g.36787130)	yes	unknown	0	0	0	0	170
P-0030844-T01-IM6	SOMATIC	FGFR2	MYH15	10	3	123240665	108134575	Intron of FGFR2(-):1Kb before exon 18	Intron of MYH15(-):1Kb after exon 30		GRCh37	TRANSLOCATION	10	105	Protein Fusion: in frame  {FGFR2:MYH15}	PRECISE	5to3	FGFR2 (NM_000141) - MYH15 (NM_014981) rearrangement: t(3;10)(q13.13;q26.13)(chr3:g.108134575::chr10:g.123240665)	yes	unknown	0	0	0	0	127
P-0071243-T01-IM7	SOMATIC	FGFR2	SOGA1	20	10	35479934	123240746	Intron of SOGA1(-):11Kb after exon 1	Intron of FGFR2(-):1Kb before exon 18		GRCh37	TRANSLOCATION	10	10	Protein Fusion: in frame  {FGFR2:SOGA1}	PRECISE	3to5	FGFR2 (NM_000141) - SOGA1 (NM_080627) fusion: t(10;20)(q26.13;q11.23)(chr10:g.123240746::chr20:g.35479934)	yes	unknown	0	0	0	0	10
P-0022337-T01-IM6	SOMATIC	FGFR2	TBC1D4	13	10	75946348	123241723	Intron of TBC1D4(-):10Kb before exon 2	Intron of FGFR2(-):1Kb after exon 17		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {FGFR2:TBC1D4}	PRECISE	3to5	FGFR2 (NM_000141) - TBC1D4 (NM_014832) Rearrangement : t(10;13)(q26.13;q22.2)(chr10:g.123241723::chr13:g.75946348)			0	0	0	0	79
P-0029726-T01-IM6	SOMATIC	FGFR2	UBP1	10	3	123240062	33449450	Intron of FGFR2(-):527bp before exon 18	Intron of UBP1(-):731bp after exon 9		GRCh37	TRANSLOCATION	10	56	Protein Fusion: in frame  {FGFR2:UBP1}	PRECISE	5to3	FGFR2 (NM_000141) - UBP1 (NM_001128161) fusion: t(3;10)(p22.3;q26.13)(chr3:g.33449450::chr10:g.123240062)	yes	unknown	0	0	0	0	56
P-0015432-T01-IM6	SOMATIC	FGFR2	CAT	11	10	34467980	123242534	Intron of CAT(+): 3Kb before exon 2	Intron of FGFR2(-): 678bp after exon 16		GRCh37	TRANSLOCATION			Protein fusion: in frame (FGFR2-CAT)	PRECISE	5to5	FGFR2 (NM_000141) - CAT (NM_001752) rearrangement: t(10;11)(q26.13;p13)(chr10:g.123242534::chr11:g.34467980)			0	0	0	0	5
P-0008657-T01-IM5	SOMATIC	FGFR2	KLRAQ1	10	2	123240684	48721864	Intron of FGFR2(-): 1Kb before exon 18	Intron of KLRAQ1(+): 954bp before exon 16		GRCh37	TRANSLOCATION	25	16	Protein fusion: in frame (FGFR2-KLRAQ1)	PRECISE	5to5	FGFR1 (NM_000141) - PPP1R21 (NM_152994)  Rearrangement  : t(2;10)(2p16.3;10q26.13)(chr2:g.48721864::chr10:g.123240684)	yes	unknown	0	0	0	0	11
P-0063512-T01-IM7	SOMATIC	FGFR2	ATE1	10	10	123263336	123631446	Exon 10 of FGFR2(-)	Intron of ATE1(-):2Kb before exon 8		GRCh37	DUPLICATION	10	33	Protein Fusion: mid-exon  {FGFR2:ATE1}	PRECISE	5to3	FGFR2 (NM_000141) - ATE1 (NM_001001976) rearrangement: c.1407:FGFR2_c.943-1893:ATE1dup	yes	unknown	368110	24131	25580	0	34
P-0058539-T01-IM6	SOMATIC	FGFR2	FOXP1	10	3	123239434	71113500	Exon 18 of FGFR2(-)	Intron of FOXP1(-):11Kb before exon 4		GRCh37	TRANSLOCATION	10	35	Protein Fusion: mid-exon  {FGFR2:FOXP1}	PRECISE	5to3	FGFR2 (NM_000141) - FOXP1 (NM_001244814) fusion: t(3;10)(p13;q26.13)(chr3:g.71113500::chr10:g.123239434)	yes	unknown	0	0	0	0	35
P-0031242-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123239432	123987760	Exon 18 of FGFR2(-)	Intron of TACC2(+):237bp after exon 13		GRCh37	INVERSION	0	1001	Protein Fusion: mid-exon  {FGFR2:TACC2}	IMPPRECISE	5to5	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2405:FGFR2_c.7896+237:TACC2inv	yes	unknown	748328	63627	1792314	0	3271
P-0020135-T01-IM6	SOMATIC	FGFR2	BTBD16	10	10	123239702	124049317	Intron of FGFR2(-):167bp before exon 18	Intron of BTBD16(+):106bp before exon 6		GRCh37	INVERSION	0	41	Protein Fusion: out of frame  {FGFR2:BTBD16}	IMPPRECISE	5to5	FGFR2 (NM_000141) - BTBD16 (NM_144587) rearrangement: c.2302-167:FGFR2_c.386-107: BTBD16inv	yes	unknown	809615	97363	2155489	0	77
P-0021826-T01-IM6	SOMATIC	FGFR2	ANKRD11	16	10	89538175	123243799	5-UTR of ANKRD11(-):203Kb before coding start	Intron of FGFR2(-):482bp before exon 17		GRCh37	TRANSLOCATION			Transcript Fusion {FGFR2:ANKRD11}	PRECISE	3to5	FGFR2 (NM_000141) - ANKRD11 (NM_013275) rearrangement: t(10,16)(q26.13,q24.3)(chr10:g.123243799::chr16:g.89538175)			0	0	0	0	58
P-0044178-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1806246	1807624	Exon 9 of FGFR3(+)	Exon 13 of FGFR3(+)		GRCh37	INVERSION	7	2	Antisense Fusion	PRECISE	3to3	FGFR3 (NM_000142) rearrangement: c.1265_c.1793inv	yes	unknown	1378	9131	4100	0	2
P-0054542-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1808100	1812983	Intron of FGFR3(+):46bp after exon 15	Promoter of FGFR3(+):18Kb from tx start		GRCh37	INVERSION	10	10	Antisense Fusion	PRECISE	3to3	FGFR3 (NM_000142) rearrangement: c.2030+46:FGFR3_chr4:g.1812983inv	yes	unknown	4883	11952	9911	0	10
P-0068367-T01-IM7	SOMATIC	FGFR3		4	4	1803821	1807420	Intron of FGFR3(+):69bp after exon 7	Intron of FGFR3(+):24bp after exon 12		GRCh37	DELETION			Deletion of 5 exons : out of frame	PRECISE	3to5	FGFR3 (NM_000142) rearrangement: c.930+69_c.1645+24del			3599	14117	10947	0	15
P-0002016-T01-IM3	SOMATIC	FGFR3	FGFR3	4	4	1807744	1809098	Intron of FGFR3(+): 34bp before exon 14	3-UTR of FGFR3(+): 109bp after coding stop		GRCh37	DELETION	18	8	FGFR3-intragenic	PRECISE	3to5		yes	unknown	1354	5083	2369	0	8
P-0061727-T01-IM7	SOMATIC	FGFR3		4	4	1807844	1818055	Exon 14 of FGFR3(+)	Intron of LETM1(-):398bp after exon 12		GRCh37	DUPLICATION			FGFR3-intragenic	PRECISE	5to3	FGFR3 (NM_000142) rearrangement: c.1903:FGFR3_chr4:g.1818055dup			10211	6720	4769	0	5
P-0008771-T01-IM5	SOMATIC	FGFR3		4	4	1807251	2024681	Intron of FGFR3(+): 35bp before exon 12	IGR: 19Kb before C4orf48(+)		GRCh37	DUPLICATION			FGFR3-intragenic	PRECISE	5to3	FGFR3 (NM_000142) rearrangement: c.1535-35:FGFR3_chr4:g.202468dup			217430	13323	12893	0	6
P-0024801-T03-IM7	SOMATIC	FGFR3		4	1	1801306	192663302	Intron of FGFR3(+):56bp after exon 3	IGR: 58Kb before RGS13(+)		GRCh37	TRANSLOCATION			FGFR3-intragenic	PRECISE	5to3	FGFR3 (NM_000142) rearrangement: t(1;4)(q31.2;p16.3)(chr1:g.192663302::chr4:g.1801306)			0	0	0	0	30
P-0028743-T01-IM6	SOMATIC	FGFR3		4	4	1808743	2007790	Intron of FGFR3(+):82bp after exon 17	Intron of NELFA(-):3Kb after exon 1		GRCh37	DUPLICATION			FGFR3-intragenic	PRECISE	5to3	FGFR3 (NM_000142) rearrangement: c.2274+82:FGFR3_chr4:g.2007790dup			199047	36917	51927	0	37
P-0034419-T01-IM6	SOMATIC	FGFR3	JAKMIP1								GRCh37				FGFR3-JAKMIP1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-JAKMIP1 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and JAKMIP1 Exon4 (NM_144720).	yes	unknown					
P-0068474-T01-IM7	SOMATIC	FGFR3	MAEA								GRCh37				FGFR3-MAEA Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-MAEA fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and MAEA Exon4 (NM_001017405).	yes	unknown					
P-0015984-T01-IM6	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TAAC3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TAAC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_001163213) and TAAC3 Exon8 (undefined).	yes	unknown					
P-0017046-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740310	1808671	Intron of TACC3(+):881bp after exon 10	Intron of FGFR3(+):10bp after exon 17		GRCh37	DUPLICATION			FGFR3-TACC3 Fusion	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused in-frame with TACC3 exons 11-16): c.2274+10:FGFR3_c.1941+881:TACC3dup			68361	0	22		
P-0044057-T01-IM6	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TACC3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE CLINICAL PANEL: FGFR3-TACC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TACC3 Exon8 (NM_006342).	yes	unknown					
P-0049203-T01-IM6	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TACC3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TACC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TACC3 Exon11 (NM_006342). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ZNF697-NOTCH2 fusion. Note: The rearrangement is a fusion between genes ZNF697 5'UTR (NM_001080470) and NOTCH2 Exon27 (NM_024408). Note2 : The functional significance of this event is unknown (PMID: 22101766). POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM: DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:  AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0068060-T02-IM7	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TACC3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TACC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TACC3 Exon10 (NM_006342).	yes	unknown					
P-0017444-T01-IM6	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TACC3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TACC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TACC3 Exon11 (NM_006342).	yes	unknown					
P-0022569-T01-IM6	SOMATIC	FGFR3	TACC3								GRCh37				FGFR3-TACC3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TACC3 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TACC3 Exon8 (NM_006342). Note 2: Two additional fusions: MTMR2-MAML2 and USP13-PIK3CA were also detected (PMID: 25485619). The functional significance of both fusions is unknown.	yes	unknown					
P-0050964-T01-IM6	SOMATIC	FGFR3	TNIP2								GRCh37				FGFR3-TNIP2 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: FGFR3-TNIP2 fusion. Note: The rearrangement is an in-frame fusion between genes FGFR3 Exon17 (NM_000142) and TNIP2 Exon2 (NM_024309).	yes	unknown					
P-0034419-T01-IM6	SOMATIC	FGFR3	JAKMIP1	4	4	1808749	6098039	Intron of FGFR3(+):88bp after exon 17	Intron of JAKMIP1(-):9Kb after exon 3		GRCh37	INVERSION	10	349	Protein Fusion: in frame  {FGFR3:JAKMIP1}	PRECISE	3to3	FGFR3 (NM_000142) - JAKMIP1 (NM_001099433) fusion (FGFR3 exons 1-17 fused to JAKM1P1 exons 4-21): c.2274+88:FGFR3_c.624+9161:JAKMIP1inv	yes	unknown	4289290	44861	58176	0	345
P-0044057-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737269	1808714	Intron of TACC3(+):188bp before exon 8	Intron of FGFR3(+):53bp after exon 17		GRCh37	DUPLICATION	10	12	Protein Fusion: in frame  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+53:FGFR3_c.1645-189:TACC3dup	yes	unknown	71445	24249	33769	0	12
P-0072422-T02-IM7	SOMATIC	FGFR3	TACC3	4	4	1740919	1808821	Intron of TACC3(+):509bp before exon 11	Intron of FGFR3(+):21bp before exon 18		GRCh37	DUPLICATION	10	197	Protein Fusion: in frame  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-22:FGFR3_c.1942-510:TACC3dup	yes	unknown	67902	29278	104066	0	203
P-0022569-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737264	1808705	Intron of TACC3(+):193bp before exon 8	Intron of FGFR3(+):44bp after exon 17		GRCh37	DUPLICATION			Protein Fusion: in frame  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused with TACC3 exons 8-16. This includes the kinase domain of FGFR3.): c.2274+44:FGFR3_c.1645-194:TACC3dup			71441	40582	35987	0	4
P-0068474-T01-IM7	SOMATIC	FGFR3	MAEA	4	4	1313709	1808895	Intron of MAEA(+):2Kb before exon 4	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {FGFR3:MAEA}	PRECISE	5to3	FGFR3 (NM_000142) - MAEA (NM_001017405) fusion: c.2327:FGFR3_c.457-2460:MAEAdup	yes	unknown	495186	13086	19767	0	7
P-0024991-T01-IM6	SOMATIC	FGFR3	ROBO1	4	3	1808963	78737098	Exon 18 of FGFR3(+)	Intron of ROBO1(-):699bp after exon 9		GRCh37	TRANSLOCATION	0	8	Protein Fusion: mid-exon  {FGFR3:ROBO1}	IMPPRECISE	3to3	FGFR3 (NM_000142) - ROBO1 (NM_002941) fusion: t(3;4)(p12.3;p16.3)(chr3:g.78737098::chr4:g.1808963)	yes	unknown	0	0	0	0	8
P-0037126-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739309	1808878	Intron of TACC3(+):15bp before exon 10	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION	10	20	Protein Fusion: mid-exon  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2310:FGFR3_c.1837-16:TACC3dup	yes	unknown	69569	34673	18264	0	21
P-0074909-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739350	1808710	Exon 10 of TACC3(+)	Intron of FGFR3(+):49bp after exon 17		GRCh37	DUPLICATION	10	50	Protein Fusion: mid-exon  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+49:FGFR3_c.1862:TACC3dup	yes	unknown	69360	22384	37813	0	51
P-0056782-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739199	1808911	Intron of TACC3(+):125bp before exon 10	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {FGFR3:TACC3}	IMPPRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2343:FGFR3_c.1837-126:TACC3dup			69712	42549	72234	0	5
P-0017444-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739499	1808864	Intron of TACC3(+):70bp after exon 10	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {FGFR3:TACC3}	IMPPRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused with TACC3 exons 11-16): c.2296:FGFR3_c.1941+70:TACC3dup			69365	26575	48689	0	44
P-0017551-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739063	1808877	Intron of TACC3(+):8bp after exon 9	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused with TACC3 exons 10-16): c.2309:FGFR3_c.1836+8:TACC3dup			69814	22540	61826	0	111
P-0036563-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1727442	1804890	Intron of TACC3(+):2Kb after exon 3	Intron of FGFR3(+):528bp before exon 8		GRCh37	DUPLICATION			Protein Fusion: out of frame  {FGFR3:TACC3}	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion(FGFR3 exon7 fused with TACC3 exon4) :  c.931-529:FGFR3_c.305+1845:TACC3dup			77448	12934	13926	0	17
P-0044207-T01-IM6	SOMATIC	FGFR4	FGFR4	5	5	51357750	176524667	IGR: 679Kb before ISL1(+)	Exon 18 of FGFR4(+)		GRCh37	INVERSION	10	9	FGFR4-intragenic	PRECISE	3to3	FGFR4 (NM_213647) rearrangement: c.2399:FGFR4_chr5:g.51357750inv	yes	unknown	125166917	322935	481435	0	9
P-0007500-T01-IM5	SOMATIC	FGFR4		5	5	168772933	176519893	IGR: 45Kb after SLIT3(-)	Intron of FGFR4(+): 108bp after exon 8		GRCh37	DUPLICATION			FGFR4-intragenic	PRECISE	5to3	FGFR4 (NM_213647) rearrangement: chr5:g.168772933 _c.1057+108:FGFR4dup			7746960	42716	42158	0	12
P-0085308-T01-IM7	SOMATIC	FGFR4		5	5	65258922	176516667	5-UTR of ERBB2IP(+):30Kb before coding start	Exon 2 of FGFR4(+)		GRCh37	DELETION			Protein Fusion: mid-exon  {ERBB2IP:FGFR4}	IMPPRECISE	3to5	FGFR4 (NM_213647) rearrangement: c.64:FGFR4_chr5:g.65258922del			111257745	666439	740638	0	5
P-0018889-T01-IM6	SOMATIC	FGFR4	NSD1	5	5	176522403	176627216	Exon 12 of FGFR4(+)	Intron of NSD1(+):4Kb before exon 4		GRCh37	DUPLICATION	6	3	Protein Fusion: mid-exon  {NSD1:FGFR4}	PRECISE	5to3	NSD1 (NM_022455) - FGFR4 (NM_213647) rearrangement: c.1064-3905:NSD1_c.1592:FGFR4dup	yes	unknown	104813	27168	34811	0	3
P-0023272-T01-IM6	SOMATIC	FH	FH	1	1	241659476	241663568	Promoter of FH(-):1Kb from tx start	Intron of FH(-):168bp after exon 9		GRCh37	DELETION	9	5	Deletion within transcript	PRECISE	3to5	FH (NM_000143) Rearrangement : c.1390+169_c.*1652_del	yes	unknown	4092	1769	1078	0	5
P-0087854-T01-IM7	SOMATIC	FH		1	1	241677013	241680482	Exon 3 of FH(-)	Exon 2 of FH(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	FH (NM_000143) rearrangement: c.267_c.268del			3469	560	129	0	3
P-0005712-T01-IM5	SOMATIC	FH	FH	1	1	241665729	241672991	Intron of FH(-): 14bp after exon 8	Intron of FH(-): 906bp before exon 5		GRCh37	DUPLICATION	67	72	Duplication of 4 exons: in frame	PRECISE	5to3	FH (NM_000143) rearrangement: c.556-906_c.1236+14dup	yes	unknown	7262	7315	12373	0	70
P-0063160-T02-IM7	SOMATIC	FH	WDR64	1	1	241661197	241817859	Exon 10 of FH(-)	Intron of WDR64(+):2Kb after exon 1		GRCh37	DELETION	10	14	WDR64-FH fusion	PRECISE	3to5	FH (NM_000143) rearrangement: c.1464:FH_chr1:g.241817859del	yes	unknown	156662	13339	13563	0	14
P-0019023-T01-IM6	SOMATIC	FHIT	SHQ1	3	3	59880285	72866236	Intron of FHIT(-):28Kb after exon 8	Intron of SHQ1(-):144bp after exon 7		GRCh37	INVERSION	10	9	Antisense Fusion	PRECISE	5to5	SHQ1 (NM_018130) rearrangement: chr3:g.59880285_c.882+145:SHQ1inv	yes	unknown	12985951	66546	83624	0	9
P-0034144-T01-IM6	SOMATIC	FLCN		17	17	14246021	17131222	Intron of HS3ST3B1(+):2Kb before exon 2	Exon 4 of FLCN(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	FLCN (NM_144997) rearrangement: c.230:FLCN_chr17:g.14246021del			2885201	79417	79520	0	12
P-0050966-T01-IM6	SOMATIC	FLCN	FLCN	17	17	17121947	17124619	Intron of FLCN(-):385bp after exon 9	Intron of FLCN(-):231bp after exon 8		GRCh37	DELETION	10	9	Deletion of 1 exon : out of frame	PRECISE	3to5	FLCN (NM_144997) rearrangement: c.871+232_c.1062+386del	yes	unknown	2672	3150	1239	0	16
P-0038774-T01-IM6	SOMATIC	FLCN	RAI1	17	17	17127466	17661541	Intron of FLCN(-):9bp before exon 6	5-UTR of RAI1(+):35Kb before coding start		GRCh37	DELETION	10	19	FLCN-intragenic	PRECISE	3to5	FLCN (NM_144997) rearrangement: c.397-9:FLCN_chr17:g.17661541del	yes	unknown	534075	7501	7179	0	19
P-0062608-T02-IM7	SOMATIC	FLCN	FLCN	17	17	17119017	17120608	Intron of FLCN(-):387bp before exon 12	Intron of FLCN(-):112bp before exon 10		GRCh37	INVERSION	0	40	FLCN-intragenic	IMPPRECISE	3to3	FLCN (NM_144997) rearrangement: c.1063-112_c.1301-387inv	yes	unknown	1591	3630	2085	0	40
P-0039617-T02-IM7	SOMATIC	FLCN	NT5M	17	17	17129294	17267083	Intron of FLCN(-):195bp after exon 5	IGR: 60Kb before NT5M(+)		GRCh37	INVERSION	10	8	FLCN-intragenic	PRECISE	3to3	FLCN (NM_144997) rearrangement: c.396+196:FLCN_chr17:g.17267083inv	yes	unknown	137789	8088	14743	0	8
P-0045190-T01-IM6	SOMATIC	FLCN		17	17	17116943	17120412	3-UTR of FLCN(-):25bp after coding stop	Exon 10 of FLCN(-)		GRCh37	DELETION			FLCN-intragenic	PRECISE	3to5	FLCN (NM_144997) rearrangement: c.1147:FLCN_chr17:g.17116943del			3469	7622	7920	0	83
P-0082992-T01-IM7	SOMATIC	FLCN		17	17	17118770	18104367	Intron of FLCN(-):140bp before exon 12	Intron of ALKBH5(+):6Kb before exon 3		GRCh37	DELETION			FLCN-intragenic	IMPPRECISE	3to5	FLCN (NM_144997) rearrangement: c.1301-140:FLCN_chr17:g.18104367del			985597	20406	36322	0	7
P-0085557-T01-IM7	SOMATIC	FLCN		17	17	10569570	17117165	IGR: 14Kb before SCO1(-)	Exon 14 of FLCN(-)		GRCh37	INVERSION			FLCN-intragenic	PRECISE	3to3	FLCN (NM_144997) rearrangement: c.1544:FLCN_chr17:g.10569570inv			6547595	81853	152637	0	10
P-0020833-T01-IM6	SOMATIC	FLCN	FOXP1	17	3	17129138	71571851	Intron of FLCN(-):351bp after exon 5	5-UTR of FOXP1(-):563Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {FLCN:FOXP1}	PRECISE	5to3	FLCN (NM_144997) - FOXP1 (NM_001244814) rearrangement: t(3,17)(p13,p11.2)(chr3:g.71571851::chr17:g.17129138)			0	0	0	0	13
P-0047012-T01-IM6	SOMATIC	FLT1		13	13	28959081	29026790	Exon 14 of FLT1(-)	Intron of FLT1(-):14Kb after exon 3		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	FLT1 (NM_002019) rearrangement: c.388+14250_c.2057inv			67709	7162	15806	0	26
P-0053863-T01-IM6	SOMATIC	FLT1		13	13	28847891	28913247	Intron of PAN3(+):2Kb after exon 14	Intron of FLT1(-):57bp after exon 17		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	FLT1 (NM_002019) rearrangement: c.2488+58:FLT1_chr13:g.28847891del			65356	19352	32078	0	4
P-0050888-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28895704	28904559	Exon 23 of FLT1(-)	Intron of FLT1(-):694bp before exon 19		GRCh37	DELETION	10	122	Deletion within transcript : mid-exon	PRECISE	3to5	FLT1 (NM_002019) rearrangement: c.2594-694_c.3070del	yes	unknown	8855	5056	4168	0	125
P-0061144-T01-IM7	SOMATIC	FLT1	FLT1	13	13	28901645	28932852	Exon 20 of FLT1(-)	Intron of FLT1(-):1Kb before exon 15		GRCh37	INVERSION	10	22	FLT1-intragenic	PRECISE	3to3	FLT1 (NM_002019) rearrangement: c.2117-1030_c.2750inv	yes	unknown	31207	6360	10451	0	22
P-0078800-T01-IM7	SOMATIC	FLT1	RBM26	13	13	29041040	79768578	Exon 3 of FLT1(-)	IGR: 124Kb before RBM26(-)		GRCh37	INVERSION	10	20	FLT1-intragenic	PRECISE	3to3	FLT1 (NM_002019) rearrangement: c.388:FLT1_chr13:g.79768578inv	yes	unknown	50727538	305931	789514	0	20
P-0021253-T01-IM6	SOMATIC	FLT1		13	13	29004283	59883399	Exon 8 of FLT1(-)	IGR: 356Kb before DIAPH3(-)		GRCh37	DELETION			FLT1-intragenic	PRECISE	3to5	FLT1 (NM_002019) rearrangement: c.1010_chr13:g.59883399del			30879116	204184	87483	0	8
P-0022475-T01-IM6	SOMATIC	FLT1		17	13	44158690	28963950	Intron of KANSL1(-):1Kb after exon 5	Exon 13 of FLT1(-)		GRCh37	TRANSLOCATION			FLT1-intragenic	PRECISE	3to3	FLT1 (NM_002019) rearrangement: t(13;17)(q12.3;q21.31)(chr13:g.28963950::chr17:g.44158690)			0	0	0	0	14
P-0024586-T01-IM6	SOMATIC	FLT1		13	13	29004121	30250041	Intron of FLT1(-):65bp after exon 8	IGR: 89Kb before UBL3(-)		GRCh37	INVERSION			FLT1-intragenic	PRECISE	5to5	FLT1 (NM_002019) rearrangement: c.1106+66_chr13:g.30250041inv			1245920	11732	8862	0	15
P-0034092-T01-IM6	SOMATIC	FLT1		13	13	25721451	28880888	IGR: 14Kb before AMER2(-)	Exon 29 of FLT1(-)		GRCh37	DUPLICATION			FLT1-intragenic	PRECISE	5to3	FLT1 (NM_002019) rearrangement: c.3742:FLT1_chr13:g.25721451dup			3159437	55804	134251	0	4
P-0064307-T01-IM7	SOMATIC	FLT1	MAPK1	22	13	22200328	28896954	Intron of MAPK1(-):21Kb after exon 1	Exon 21 of FLT1(-)		GRCh37	TRANSLOCATION	10	78	MAPK1-FLT1 fusion	PRECISE	3to3	FLT1 (NM_002019) - MAPK1 (NM_002745) rearrangement: t(13;22)(q12.2;q11.22)(chr13:g.28896954::chr22:g.22200328)	yes	unknown	0	0	0	0	78
P-0072844-T02-IM7	SOMATIC	FLT1	PAN3	13	13	28790544	28973149	Intron of PAN3(+):4Kb before exon 6	Intron of FLT1(-):2Kb before exon 12		GRCh37	INVERSION	10	108	Protein Fusion: in frame  {FLT1:PAN3}	PRECISE	5to5	FLT1 (NM_002019) - PAN3 (NM_175854) rearrangement: c.1552-1944:FLT1_c.853-3824:PAN3inv	yes	unknown	182605	25101	45741	0	132
P-0002796-T01-IM3	SOMATIC	FLT1	IRS2	13	13	29061657	110419477	Intron of FLT1(-): 7Kb after exon 1	Intron of IRS2(-): 11Kb before exon 2		GRCh37	DELETION	36	19	Protein fusion: in frame (IRS2-FLT1)	PRECISE	3to5		yes	unknown	81357820	229601	147196	0	21
P-0037381-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28496734	28611217	Intron of PDX1(+):2Kb before exon 2	Intron of FLT3(-):104bp after exon 10		GRCh37	DELETION	8	12	Antisense Fusion	PRECISE	3to5	FLT3 (NM_004119) rearrangement: c.1309+105:FLT3_chr13:g.28496734del	yes	unknown	114483	15362	20842	0	12
P-0003540-T01-IM5	SOMATIC	FLT3	FLT3	13	13	28635314	28636025	Intron of FLT3(-): 690bp after exon 3	Exon 3 of FLT3(-)		GRCh37	DELETION	0	5	Deletion within transcript: mid-exon	IMPRECISE	3to5	c.368+690_c.347del	yes	unknown	711	822	565	0	9
P-0074807-T02-IM7	SOMATIC	FLT3	MIR4470	13	8	28674321	62681320	Intron of FLT3(-):283bp after exon 1	IGR: 54Kb before MIR4470(+)		GRCh37	TRANSLOCATION	10	77	FLT3-intragenic	PRECISE	5to5	FLT3 (NM_004119) rearrangement: t(8;13)(q12.3;q12.2)(chr8:g.62681320::chr13:g.28674321)	yes	unknown	0	0	0	0	87
P-0022062-T01-IM6	SOMATIC	FLT3		13	13	28624316	28727766	Exon 6 of FLT3(-)	Intron of PAN3(+):15Kb after exon 1		GRCh37	DELETION			FLT3-intragenic	IMPPRECISE	3to5	FLT3 (NM_004119) rearrangement: c.658:FLT3_chr13:g.28727766del			103450	6986	18246	0	133
P-0024217-T01-IM6	SOMATIC	FLT3		13	2	28623971	38136570	Intron of FLT3(-):60bp before exon 7	IGR: 16Kb before RMDN2(+)		GRCh37	TRANSLOCATION			FLT3-intragenic	PRECISE	3to3	FLT3 (NM_004119) rearrangement: t(2;13)(p22.2;q12.2)(chr2:g.38136570::chr13:g.28623971)			0	0	0	0	4
P-0031714-T01-IM6	SOMATIC	FLT3		13	13	27509046	28609925	IGR: 131Kb before USP12(-)	Intron of FLT3(-):115bp before exon 12		GRCh37	DELETION			FLT3-intragenic	PRECISE	3to5	FLT3 (NM_004119) Rearrangement : chr13:g.27509046_c.1419-115del			1100879	17765	21276	0	21
P-0064300-T01-IM7	SOMATIC	FLT3		13	13	19760941	28609976	5-UTR of LOC101928697(+):664bp before coding start	Intron of FLT3(-):95bp after exon 11		GRCh37	INVERSION			Transcript Fusion {LOC101928697:FLT3}	PRECISE	3to3	FLT3 (NM_004119) rearrangement: c.1418+96:FLT3_chr13:g.19760941inv			8849035	96063	141978	0	12
P-0046083-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180055946	180074181	Exon 8 of FLT4(-)	Intron of FLT4(-):2Kb after exon 1		GRCh37	INVERSION	0	287	Antisense Fusion	IMPPRECISE	5to5	FLT4 (NM_182925) rearrangement: c.58+2307_c.1039inv	yes	unknown	18235	14821	60239	0	583
P-0003863-T01-IM5	SOMATIC	FLT4	FLT4	5	5	180049922	180052438	Intron of FLT4(-): 83bp before exon 12	Intron of FLT4(-): 431bp after exon 10		GRCh37	DELETION	27	15	Deletion of 1 exon: out of frame	PRECISE	3to5	FLT4 (NM_182925) rearrangement: c.1421+431_c.1549-83:FLT4del	yes	unknown	2516	1634	1925	0	20
P-0078241-T01-IM7	SOMATIC	FLT4	FLT4	5	5	180058452	180074191	Intron of FLT4(-):229bp after exon 2	Intron of FLT4(-):2Kb after exon 1		GRCh37	DUPLICATION	10	13	Duplication of 1 exon : out of frame	PRECISE	5to3	FLT4 (NM_182925) rearrangement: c.58+2297_c.155+230dup	yes	unknown	15739	1175	3325	0	13
P-0032098-T01-IM6	SOMATIC	FLT4		5	5	180046293	180053358	Exon 19 of FLT4(-)	Intron of FLT4(-):93bp before exon 9		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	IMPPRECISE	5to3	FLT4 (NM_182925) rearrangement: c.1104-93_c.2721dup			7065	28038	26035	0	6
P-0050286-T01-IM6	SOMATIC	FLT4	FLT4	5	5	144857146	180038406	IGR: 279Kb before PRELID2(-)	Exon 27 of FLT4(-)		GRCh37	INVERSION	10	13	FLT4-intragenic	PRECISE	5to5	FLT4 (NM_182925) rearrangement: c.3611:FLT4_chr5:g.144857146inv	yes	unknown	35181260	241326	263130	0	15
P-0085277-T01-IM7	SOMATIC	FLT4		5	5	169046233	180056914	IGR: 18Kb before DOCK2(+)	Intron of FLT4(-):28bp after exon 5		GRCh37	INVERSION			FLT4-intragenic	PRECISE	5to5	FLT4 (NM_182925) rearrangement: c.676+29:FLT4_chr5:g.169046233inv			11010681	187142	147066	0	16
P-0025342-T01-IM6	SOMATIC	FLT4	MGAT1	5	5	180043693	180234520	Intron of FLT4(-):204bp before exon 23	5-UTR of MGAT1(-):16Kb before coding start		GRCh37	DELETION	9	3	Transcript Fusion {MGAT1:FLT4}	PRECISE	3to5	MGAT1 (NM_001114617) - FLT4 (NM_182925) rearrangement: c.-127+1128:MGAT1_c.3097-204:FLT4del	yes	unknown	190827	30682	47051	0	3
P-0038772-T01-IM6	SOMATIC	FNDC3B	CDKN2A	9	3	21971075	171854277	Exon 2 of CDKN2A(-)	Intron of FNDC3B(+):3Kb after exon 3		GRCh37	TRANSLOCATION	10	11	Protein Fusion: mid-exon  {FNDC3B:CDKN2A}	PRECISE	3to3	FNDC3B (NM_022763) - CDKN2A (NM_058195, NM_000077) rearrangement: t(3;9)(q26.31;p21.3)(chr3:g.171854277::chr9:g.21971075)	yes	unknown	0	0	0	0	17
P-0024872-T01-IM6	SOMATIC	FNTA	RECQL4	8	8	42942768	145737558	Promoter of FNTA(+):31Kb from tx start	Exon 19 of RECQL4(-)		GRCh37	INVERSION	10	55	Protein Fusion: mid-exon  {FNTA:RECQL4}	PRECISE	3to3	RECQL4 (NM_004260) rearrangement: c.3205:RECQL4_chr8:g.42942768inv	yes	unknown	102794790	250532	339198	0	52
P-0008795-T01-IM5	SOMATIC	FOXA1	CASZ1	14	1	38061338	10708606	Exon 2 of FOXA1(-)	Intron of CASZ1(-): 410bp before exon 16		GRCh37	TRANSLOCATION			Antisense fusion	PRECISE	5to5	FOXA1 (NM_004496) - CASZ1 (NM_001079843) rearrangement : t(1;14)(p36.22;q21.2)(chr1:g.10708606::chr14:g.38061338)			0	0	0	0	37
P-0050954-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	37871839	38061177	Intron of MIPOL1(+):20Kb before exon 13	Exon 2 of FOXA1(-)		GRCh37	DELETION	10	40	Antisense Fusion	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.812:FOXA1_chr14:g.37871839del	yes	unknown	189338	6067	6036	0	44
P-0042084-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38056065	38061177	Promoter of FOXA1(-):3Kb from tx start	Exon 2 of FOXA1(-)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.812:FOXA1_chr14:g.38056065del	yes	unknown	5112	7771	9150	0	12
P-0078355-T01-IM7	SOMATIC	FOXA1		14	14	38056394	38060927	Promoter of FOXA1(-):2Kb from tx start	Exon 2 of FOXA1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.1062:FOXA1_chr14:g.38056394del			4533	13886	19581	0	3
P-0033492-T01-IM6	SOMATIC	FOXA1		14	14	38061907	38063921	Exon 2 of FOXA1(-)	Intron of FOXA1(-):184bp after exon 1		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	FOXA1 (NM_004496) rearrangement: c.72+185_c.82dup			2014	502	517	0	3
P-0014527-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38057086	38060645	IGR: 2Kb before FOXA1(-)	Exon 2 of FOXA1(-)		GRCh37	DELETION	6	6	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) Rearrangement: chr14:g.38057086_c.1344:FOXA1del	yes	unknown	3559	3401	3422	0	6
P-0023401-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061968	38074562	Intron of FOXA1(-):52bp before exon 2	IGR: 16Kb before FOXA1(-)		GRCh37	INVERSION	0	110	FOXA1-intragenic	IMPPRECISE	3to3	FOXA1 (NM_004496) rearrangement: c.73-52:FOXA1_chr14:g.38074562inv	yes	unknown	12594	2684	5032	0	108
P-0008645-T01-IM5	SOMATIC	FOXA1	FOXA1	14	14	38049617	38061020	IGR: 10Kb before FOXA1(-)	Exon 2 of FOXA1(-)		GRCh37	DELETION	33	17	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.969G_chr14:g.38049617 del.	yes	unknown	11403	9953	7579	0	17
P-0050415-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061244	38101340	Exon 2 of FOXA1(-)	IGR: 43Kb before FOXA1(-)		GRCh37	DELETION	10	61	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.745:FOXA1_chr14:g.38101340del	yes	unknown	40096	7054	8035	0	62
P-0053728-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38059618	38060848	3-UTR of FOXA1(-):951bp after coding stop	Exon 2 of FOXA1(-)		GRCh37	DELETION	10	49	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.1141:FOXA1_chr14:g.38059618del	yes	unknown	1230	2527	5406	0	53
P-0058280-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061136	38071465	Exon 2 of FOXA1(-)	IGR: 13Kb before FOXA1(-)		GRCh37	INVERSION	10	3	FOXA1-intragenic	PRECISE	5to5	FOXA1 (NM_004496) rearrangement: c.853:FOXA1_chr14:g.38071465inv	yes	unknown	10329	6805	4088	0	3
P-0058338-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38059235	38060896	3-UTR of FOXA1(-):1Kb after coding stop	Exon 2 of FOXA1(-)		GRCh37	DELETION	8	5	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.1093:FOXA1_chr14:g.38059235del	yes	unknown	1661	4460	6191	0	5
P-0068090-T01-IM7	SOMATIC	FOXA1	FOXA1	14	14	38061028	38194734	Exon 2 of FOXA1(-)	IGR: 136Kb before FOXA1(-)		GRCh37	DELETION	10	21	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.961:FOXA1_chr14:g.38194734del	yes	unknown	133706	11792	14756	0	21
P-0073182-T02-IM7	SOMATIC	FOXA1	FOXA1	14	14	38060537	38062724	3-UTR of FOXA1(-):32bp after coding stop	Intron of FOXA1(-):808bp before exon 2		GRCh37	DELETION	8	3	FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.73-808:FOXA1_chr14:g.38060537del	yes	unknown	2187	5806	6636	0	3
P-0014368-T01-IM6	SOMATIC	FOXA1		14	14	38061057	38567231	Exon 2 of FOXA1(-)	IGR: 110Kb before SSTR1(+)		GRCh37	DELETION			FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.932_chr14:g.38567231del			506174	10841	8278	0	21
P-0015084-T01-IM6	SOMATIC	FOXA1		14	14	38060908	38565335	Exon 2 of FOXA1(-)	IGR: 112Kb before SSTR1(+)		GRCh37	DELETION			FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.1081_chr14:g.38565335del			504427	11278	6445	0	8
P-0033175-T01-IM6	SOMATIC	FOXA1		14	14	38061948	40100185	Intron of FOXA1(-):32bp before exon 2	IGR: 235Kb before FBXO33(-)		GRCh37	DELETION			FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.73-32_chr14:g.40100185del			2038237	5224	8270	0	3
P-0086594-T01-IM7	SOMATIC	FOXA1		14	14	38030032	38060172	IGR: 29Kb before FOXA1(-)	3-UTR of FOXA1(-):397bp after coding stop		GRCh37	DELETION			FOXA1-intragenic	PRECISE	3to5	FOXA1 (NM_004496) rearrangement: c.*398:FOXA1_chr14:g.38030032del			30140	8059	14266	0	59
P-0025571-T01-IM6	SOMATIC	FOXA1	MIPOL1	14	14	37956212	38064202	Intron of MIPOL1(+):13Kb before exon 14	5-UTR of FOXA1(-):4Kb before coding start		GRCh37	DUPLICATION			FOXA1-MIPOL1 Fusion	PRECISE	5to3	FOXA1 (NM_004496) - MIPOL1 (NM_138731) rearrangement: c.-25:FOXA1_c.1032-12901:MIPOL1dup			107990	10412	12775	0	44
P-0052879-T01-IM6	SOMATIC	FOXA1	FOXA1	X	14	133306025	38060608	Promoter of MIR106A(-):2Kb from tx start	Exon 2 of FOXA1(-)		GRCh37	TRANSLOCATION	10	29	Protein Fusion: mid-exon  {MIR106A:FOXA1}	PRECISE	5to3	FOXA1 (NM_004496) rearrangement: t(14;X)(q21.1;q26.2)(chr14:g.38060608::chrX:g.133306025)	yes	unknown	0	0	0	0	29
P-0036235-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	37143996	38064211	Intron of PAX9(+):1Kb before exon 5	5-UTR of FOXA1(-):4Kb before coding start		GRCh37	INVERSION	10	149	Transcript Fusion {PAX9:FOXA1}	PRECISE	3to3	FOXA1 (NM_004496) rearrangement: c.-34:FOXA1_chr14:g.37143996inv	yes	unknown	920215	11438	13322	0	148
P-0086051-T02-IM7	SOMATIC	FOXF1		16	16	28836972	86544973	Exon 3 of ATXN2L(+)	Exon 1 of FOXF1(+)		GRCh37	INVERSION			FOXF1-intragenic	PRECISE	5to5	FOXF1 (NM_001451) rearrangement: c.798:FOXF1_chr16:g.28836972inv			57708001	514715	471169	0	10
P-0027664-T01-IM6	SOMATIC	FOXL2	FOXL2	3	3	138664553	138665648	Exon 1 of FOXL2(-)	5-UTR of FOXL2(-):1Kb before coding start		GRCh37	INVERSION	7	2	FOXL2-intragenic	PRECISE	3to3	FOXL2 (NM_023067) rearrangement: c.1012_c.-84inv	yes	unknown	1095	4304	10676	0	1
P-0078083-T01-IM7	SOMATIC	FOXO1	MTRF1	13	13	41162005	41822537	Intron of FOXO1(-):27Kb before exon 2	Intron of MTRF1(-):4Kb after exon 5		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	5to5	FOXO1 (NM_002015) rearrangement: c.631-27008:FOXO1_chr13:g.41822537inv	yes	unknown	660532	6744	16127	0	55
P-0042214-T01-IM6	SOMATIC	FOXO1	FOXO1	13	13	41134351	41143515	Exon 2 of FOXO1(-)	Intron of FOXO1(-):9Kb before exon 2		GRCh37	INVERSION	5	7	FOXO1-intragenic	PRECISE	3to3	FOXO1 (NM_002015) rearrangement: c.631-8518_c.1277inv	yes	unknown	9164	2857	3106	0	7
P-0062109-T02-IM7	SOMATIC	FOXO1	FOXO1	13	13	34957800	41134275	IGR: 52Kb before LINC00457(-)	Exon 2 of FOXO1(-)		GRCh37	DELETION	5	2	FOXO1-intragenic	PRECISE	3to5	FOXO1 (NM_002015) rearrangement: c.1353:FOXO1_chr13:g.34957800del	yes	unknown	6176475	12340	17234	0	2
P-0025414-T01-IM6	SOMATIC	FOXO1		13	13	41133854	105039234	Exon 2 of FOXO1(-)	IGR: 962Kb before LINC01309(+)		GRCh37	INVERSION			FOXO1-intragenic	PRECISE	5to5	FOXO1 (NM_002015) rearrangement: c.1774:FOXO1_chr13:g.105039234inv			63905380	161822	203265	0	32
P-0086555-T01-IM7	SOMATIC	FOXO1		13	13	41132668	41134629	3-UTR of FOXO1(-):991bp after coding stop	Exon 2 of FOXO1(-)		GRCh37	DELETION			FOXO1-intragenic	PRECISE	3to5	FOXO1 (NM_002015) rearrangement: c.999:FOXO1_chr13:g.41132668del			1961	5787	5338	0	20
P-0063348-T02-IM7	SOMATIC	FOXO1	MRPS31	13	13	41240078	41327833	Exon 1 of FOXO1(-)	Intron of MRPS31(-):321bp after exon 5		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {FOXO1:MRPS31}	PRECISE	5to3	FOXO1 (NM_002015) - MRPS31 (NM_005830) rearrangement: c.272:FOXO1_c.814+322:MRPS31dup			87755	3423	3413	0	4
P-0009364-T01-IM5	SOMATIC	FOXP1	FOXP1	3	3	71026189	71030446	Exon 17 of FOXP1(-)	Intron of FOXP1(-): 3Kb before exon 15		GRCh37	INVERSION	18	7	Antisense fusion	PRECISE	5to5	FOXP1 (NM_001244814) rearrangement: c.1433_c.1147-3266inv	yes	unknown	4257	4368	4307	0	7
P-0070624-T01-IM7	SOMATIC	FOXP1	FOXP1	11	3	68847406	71247370	Intron of TPCN2(+):55bp after exon 17	Exon 2 of FOXP1(-)		GRCh37	TRANSLOCATION	10	82	Antisense Fusion	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: t(3;11)(p13;q13.3)(chr3:g.71247370::chr11:g.68847406)	yes	unknown	0	0	0	0	87
P-0015618-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71026196	71036467	Intron of FOXP1(-): 3bp before exon 17	Intron of FOXP1(-): 678bp after exon 14		GRCh37	DELETION	76	100	Deletion of 2 exons: in frame	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.1429-3_c.1146+678del	yes	unknown	10271	3751	3220	0	98
P-0057563-T01-IM7	SOMATIC	FOXP1		3	3	71015020	71429666	Intron of FOXP1(-):20bp after exon 16	5-UTR of FOXP1(-):421Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.1889+21:FOXP1_chr3:g.71429666del			414646	23351	12697	0	8
P-0041274-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71019880	71027028	Intron of FOXP1(-):6bp after exon 15	Exon 11 of FOXP1(-)		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.1299_c.1722+7del	yes	unknown	7148	2930	4485	0	10
P-0048004-T01-IM6	SOMATIC	FOXP1		3	3	71102909	71123551	Exon 4 of FOXP1(-)	Intron of FOXP1(-):21Kb before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.283-20627_c.298del			20642	270	205	0	11
P-0002296-T01-IM3	SOMATIC	FOXP1	FOXP1	3	3	71027116	71377073	Exon 15 of FOXP1(-)	5-UTR of FOXP1(-): 130Kb before coding start		GRCh37	DELETION	40	20	Deletion within transcript: mid-exon	PRECISE	3to5	FOXP1 (NM_001244814) Deletion : c.1211_c.-72-28042del	yes	unknown	349957	26898	19750	0	26
P-0001340-T01-IM3	SOMATIC	FOXP1	FOXP1	3	3	71051670	71064861	Intron of FOXP1(-): 1Kb before exon 13	Intron of FOXP1(-): 57bp before exon 12		GRCh37	DUPLICATION	31	15	Duplication of 1 exon: in frame	PRECISE	5to3		yes	unknown	13191	1457	1854	0	16
P-0056623-T01-IM6	SOMATIC	FOXP1		3	3	71021451	71050963	Intron of FOXP1(-):254bp after exon 14	Intron of FOXP1(-):753bp before exon 9		GRCh37	DUPLICATION			Duplication of 6 exons : in frame	PRECISE	5to3	FOXP1 (NM_001244814) rearrangement: c.975-753_c.1652+255dup			29512	4788	10790	0	10
P-0034783-T01-IM6	SOMATIC	FOXP1	ROBO2	3	3	71050192	77000822	Exon 9 of FOXP1(-)	IGR: 88Kb before ROBO2(+)		GRCh37	DUPLICATION	0	6	FOXP1-intragenic	IMPPRECISE	5to3	FOXP1 (NM_001244814) rearrangement: c.993:FOXP1_chr3:g.77000822dup	yes	unknown	5950630	49180	54134	0	6
P-0061562-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71008361	71023840	3-UTR of FOXP1(-):36bp after coding stop	Intron of FOXP1(-):2Kb before exon 14		GRCh37	DELETION	10	7	FOXP1-intragenic	PRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.1531-2013:FOXP1_chr3:g.71008361del	yes	unknown	15479	7786	1084	0	7
P-0032233-T01-IM6	SOMATIC	FOXP1		7	3	52191431	71021205	IGR: 912Kb before POM121L12(+)	Intron of FOXP1(-):500bp after exon 14		GRCh37	TRANSLOCATION			FOXP1-intragenic	PRECISE	5to3	FOXP1 (NM_001244814) rearrangement: t(3;7)(p13;p12.1)(chr3:g.71021205::chr7:g.52191431)			0	0	0	0	6
P-0032779-T01-IM6	SOMATIC	FOXP1		3	1	71037279	2050259	Intron of FOXP1(-):51bp before exon 10	Intron of PRKCZ(+):16Kb before exon 5		GRCh37	TRANSLOCATION			FOXP1-intragenic	PRECISE	3to5	FOXP1 (NM_001244814) Rearrangement : t(1;3)(q11.2;p11.2)(chr1:g.2050259::chr3:g.71037279)			0	0	0	0	17
P-0067327-T01-IM7	SOMATIC	FOXP1		3	3	60256827	71015264	Intron of FHIT(-):257Kb before exon 6	Intron of FOXP1(-):57bp before exon 16		GRCh37	INVERSION			FOXP1-intragenic	PRECISE	3to3	FOXP1 (NM_001244814) rearrangement: c.1723-57:FOXP1_chr3:g.60256827inv			10758437	76228	62384	0	6
P-0071558-T01-IM7	SOMATIC	FOXP1		3	3	70706246	71064691	IGR: 298Kb before FOXP1(-)	Intron of FOXP1(-):8bp after exon 8		GRCh37	DELETION			FOXP1-intragenic	IMPPRECISE	3to5	FOXP1 (NM_001244814) rearrangement: c.974+9:FOXP1_chr3:g.70706246del			358445	13305	3801	0	5
P-0085176-T01-IM7	SOMATIC	FOXP1		9	3	34143600	71096060	IGR: 35Kb before UBAP1(+)	Intron of FOXP1(-):32bp after exon 6		GRCh37	TRANSLOCATION			FOXP1-intragenic	PRECISE	5to5	FOXP1 (NM_001244814) rearrangement: t(3;9)(p13;p13.3)(chr3:g.71096060::chr9:g.34143600)			0	0	0	0	8
P-0048994-T01-IM6	SOMATIC	FOXP1	RAF1								GRCh37				FOXP1-RAF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: FOXP1-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes FOXP1 Exon11 (NM_001244813) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0057048-T01-IM6	SOMATIC	FOXP1	FOXP1	8	3	26183020	71090364	Intron of PPP2R2A(+):13Kb before exon 3	Intron of FOXP1(-):114bp after exon 7		GRCh37	TRANSLOCATION	10	20	Protein Fusion: out of frame  {FOXP1:PPP2R2A}	PRECISE	5to5	FOXP1 (NM_001244814) rearrangement: t(3;8)(p13;p21.2)(chr3:g.71090364::chr8:g.26183020)	yes	unknown	0	0	0	0	20
P-0023011-T01-IM6	SOMATIC	FPGT-TNNI3K	NOTCH2	1	1	74765106	120510228	Intron of FPGT-TNNI3K(+):28Kb after exon 7	Exon 8 of NOTCH2(-)		GRCh37	INVERSION	0	7	Protein Fusion: mid-exon  {NOTCH2:FPGT-TNNI3K}	IMPPRECISE	5to5	NOTCH2 (NM_024408) - FPGT-TNNI3K (NM_001112808) rearrangement: c.1281:NOTCH2_c.747+27714: FPGT-TNNI3Kinv	yes	unknown	45745122	195452	225823	0	7
P-0019676-T01-IM6	SOMATIC	FSTL4	FLT4	5	5	132654179	180056377	Intron of FSTL4(-):2Kb before exon 5	Exon 7 of FLT4(-)		GRCh37	DUPLICATION	10	3	Protein Fusion: mid-exon  {FSTL4:FLT4}	PRECISE	5to3	FSTL4 (NM_015082) - FLT4 (NM_182925) rearrangement: c.410-1835:FSTL4_c.867:FLT4dup	yes	unknown	47402198	279250	435204	0	3
P-0026974-T01-IM6	SOMATIC	FUBP1	DDAH1	1	1	78422188	85991712	Intron of FUBP1(-):68bp after exon 17	5-UTR of DDAH1(-):205Kb before coding start		GRCh37	INVERSION	8	4	Antisense Fusion	PRECISE	5to5	FUBP1 (NM_003902) rearrangement: c.1705+69:FUBP1_chr1:g.85991712inv	yes	unknown	7569524	22841	45352	0	4
P-0019150-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430675	78435794	Intron of FUBP1(-):22bp before exon 9	Intron of FUBP1(-):95bp before exon 2		GRCh37	DELETION	8	4	Deletion of 7 exons : in frame	PRECISE	3to5	FUBP1 (NM_003902) rearrangement: c.637-22_c.121-95del	yes	unknown	5119	9144	12108	0	4
P-0067739-T01-IM7	SOMATIC	FUBP1	FUBP1	1	1	78430085	78440287	Intron of FUBP1(-):44bp before exon 11	Intron of FUBP1(-):4Kb after exon 1		GRCh37	DELETION	10	36	Deletion of 9 exons : in frame	PRECISE	3to5	FUBP1 (NM_003902) rearrangement: c.120+4282_c.838-44del	yes	unknown	10202	9560	12175	0	36
P-0054986-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430299	78438120	Intron of FUBP1(-):31bp after exon 10	Intron of FUBP1(-):2Kb before exon 2		GRCh37	DUPLICATION	10	100	Duplication of 9 exons : in frame	PRECISE	5to3	FUBP1 (NM_003902) rearrangement: c.121-2421_c.837+32dup	yes	unknown	7821	6236	17861	0	105
P-0045919-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78408581	78414877	3-UTR of NEXN(+):27Kb after coding stop	Exon 19 of FUBP1(-)		GRCh37	DELETION	10	8	FUBP1-intragenic	PRECISE	3to5	FUBP1 (NM_003902) rearrangement: c.1889:FUBP1_chr1:g.78408581del	yes	unknown	6296	815	723	0	8
P-0065254-T03-IM7	SOMATIC	FUBP1	TLDC1	16	1	84518151	78429114	Intron of TLDC1(-):2Kb before exon 6	Intron of FUBP1(-):144bp after exon 13		GRCh37	TRANSLOCATION	10	9	Protein Fusion: in frame  {FUBP1:TLDC1}	PRECISE	3to5	FUBP1 (NM_003902) - TLDC1 (NM_020947) rearrangement: t(1;16)(p31.1;q24.1)(chr1:g.78429114::chr16:g.84518151)	yes	unknown	0	0	0	0	9
P-0042223-T01-IM6	SOMATIC	FUBP1	GIPC2	1	1	78429764	78536437	Exon 12 of FUBP1(-)	Intron of GIPC2(+):10Kb before exon 2		GRCh37	INVERSION	10	25	Protein Fusion: mid-exon  {FUBP1:GIPC2}	PRECISE	5to5	FUBP1 (NM_003902) - GIPC2 (NM_017655) rearrangement: c.1024:FUBP1_c.241-9922:GIPC2inv	yes	unknown	106673	12204	14270	0	27
P-0019262-T01-IM6	SOMATIC	FUBP3	ABL1	9	9	133484759	133738428	Intron of FUBP3(+):581bp before exon 3	Intron of ABL1(+):6bp after exon 4		GRCh37	DUPLICATION	10	14	Protein Fusion: out of frame  {ABL1:FUBP3}	PRECISE	5to3	ABL1 (NM_005157) - FUBP3 (NM_003934) rearrangement: c.822+6:ABL1_c.191-582:FUBP3dup	yes	unknown	253669	9211	9443	0	14
P-0063368-T01-IM7	SOMATIC	FXR1	PIK3CA	3	3	178947717	180681739	Intron of PIK3CA(+):74bp before exon 19	Intron of FXR1(+):861bp after exon 13		GRCh37	DUPLICATION	0	6	Protein Fusion: out of frame  {FXR1:PIK3CA}	IMPPRECISE	5to3	FXR1 (NM_005087) - PIK3CA (NM_006218) rearrangement: c.1198+861:FXR1_c.2667-75:PIK3CAdup	yes	unknown	1734022	8434	14994	0	6
P-0019580-T01-IM6	SOMATIC	FXR2	TP53	17	17	7504541	7580673	Intron of FXR2(-):185bp after exon 7	5-UTR of TP53(-):8Kb before coding start		GRCh37	DELETION	10	4	Transcript Fusion {TP53:FXR2}	PRECISE	3to5	TP53 (NM_000546) - FXR2 (NM_004860) rearrangement: c.-28-733:TP53_c.660+186:FXR2del	yes	unknown	76132	21828	12881	0	4
P-0076708-T01-IM7	SOMATIC	FYN	FYN	6	6	112025303	112029123	Exon 4 of FYN(-)	Intron of FYN(-):1bp after exon 3		GRCh37	DELETION	8	2	Deletion within transcript : mid-exon	PRECISE	3to5	FYN (NM_153047) rearrangement: c.443+2_c.446del	yes	unknown	3820	648	985	0	2
P-0005307-T01-IM5	SOMATIC	FYN		6	6	112029303	116410524	Intron of FYN(-): 80bp before exon 6	IGR: 11Kb before NT5DC1(+)		GRCh37	DELETION			FYN-intragenic	PRECISE	3to5	FYN (NM_153047) rearrangement:  c.345-80_chr6:g.116410524del			4381221	9596	8088	0	6
P-0017724-T01-IM6	SOMATIC	FYN		6	2	112024156	239377558	Exon 5 of FYN(-)	IGR: 42Kb before LINC01107(-)		GRCh37	TRANSLOCATION			FYN-intragenic	PRECISE	5to3	FYN (NM_153047) rearrangement: t(2;6)(q37.3;q21)(chr2:g.239377558::chr6:g.112024156)			0	0	0	0	19
P-0033207-T01-IM6	SOMATIC	FYN		6	6	112041131	112333043	Exon 1 of FYN(-)	IGR: 42Kb before WISP3(+)		GRCh37	DUPLICATION			FYN-intragenic	PRECISE	5to3	FYN (NM_153047) rearrangement: c.124_chr6:g.112333043dup			291912	761	1657	0	6
P-0087586-T02-IM7	SOMATIC	GAB1		6	4	13191438	144380663	Intron of PHACTR1(+):9Kb after exon 7	Intron of GAB1(+):32bp after exon 8		GRCh37	TRANSLOCATION			Antisense Fusion	IMPPRECISE	3to3	GAB1 (NM_002039) rearrangement: t(4;6)(q31.21;p24.1)(chr4:g.144380663::chr6:g.13191438)			0	0	0	0	24
P-0067774-T02-IM7	SOMATIC	GAB2	RIMKLA	11	1	77932875	42869233	Intron of GAB2(-):50bp before exon 8	Intron of RIMKLA(+):948bp before exon 3		GRCh37	TRANSLOCATION	10	22	GAB2-intragenic	PRECISE	3to5	GAB2 (NM_080491) rearrangement: t(1;11)(p34.2;q14.1)(chr1:g.42869233::chr11:g.77932875)	yes	unknown	0	0	0	0	22
P-0082372-T01-IM7	SOMATIC	GAB2		16	11	30867077	77932585	Intron of BCL7C(-):21Kb before exon 6	Intron of GAB2(-):137bp after exon 8		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {GAB2:BCL7C}	PRECISE	3to5	GAB2 (NM_080491) rearrangement: t(11;16)(11q14.1,16p11.2)(chr11:g.77932585::chr16:g.30867077)			0	0	0	0	42
P-0058720-T02-IM7	SOMATIC	GAB2	FRK	11	6	77932740	116353557	Exon 8 of GAB2(-)	Intron of FRK(-):28Kb after exon 1		GRCh37	TRANSLOCATION	0	60	Protein Fusion: mid-exon  {GAB2:FRK}	IMPPRECISE	5to3	GAB2 (NM_080491) - FRK (NM_002031) rearrangement: t(6;11)(q22.1;q14.1)(chr6:g.116353557::chr11:g.77932740)	yes	unknown	0	0	0	0	66
P-0019570-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151788651	151859378	5-UTR of GALNT11(+):3Kb before coding start	Exon 43 of KMT2C(-)		GRCh37	DELETION	10	54	Antisense Fusion	PRECISE	3to5	KMT2C (NM_170606) rearrangement: g.151788651_c.11284del	yes	unknown	70727	28042	67954	0	74
P-0016012-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151822136	151845389	Promoter of GALNT11(+):99Kb from tx start	Exon 52 of KMT2C(-)		GRCh37	INVERSION	10	20	Protein Fusion: mid-exon  {GALNT11:KMT2C}	PRECISE	3to3	KMT2C (NM_170606) rearrangment: chr7:g.151822136_c.13623:KMT2Cinv	yes	unknown	23253	9046	17301	0	20
P-0018798-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151754651	151833986	5-UTR of GALNT11(+):37Kb before coding start	Exon 59 of KMT2C(-)		GRCh37	INVERSION	10	21	Protein Fusion: mid-exon  {GALNT11:KMT2C}	PRECISE	3to3	KMT2C (NM_170606) rearrangement : g.151754651_c.14667:KMT2Cinv	yes	unknown	79335	922	1251	0	35
P-0020263-T01-IM6	SOMATIC	GALNT12	TGFBR1	9	9	101610555	101891195	Intron of GALNT12(+):678bp before exon 10	Exon 2 of TGFBR1(+)		GRCh37	DELETION	10	20	Protein Fusion: mid-exon  {GALNT12:TGFBR1}	PRECISE	3to5	GALNT12 (NM_024642) - TGFBR1 (NM_004612) rearrangement: c.1606-679:GALNT12_c.156:TGFBR1del	yes	unknown	280640	834	544	0	21
P-0032027-T01-IM6	SOMATIC	GALNTL5	KMT2C	7	7	151681695	151851332	Intron of GALNTL5(+):1Kb after exon 4	Intron of KMT2C(-):19bp after exon 47		GRCh37	DELETION	10	86	Antisense Fusion	PRECISE	3to5	KMT2C (MLL3) (NM_170606) Rearrangement : c.12139+20:KMT2C_chr7:g.151681695del	yes	unknown	169637	22349	9180	0	88
P-0025087-T01-IM6	SOMATIC	GALNTL6	FAT1	4	4	173406850	187627883	Intron of GALNTL6(+):137Kb after exon 5	Exon 2 of FAT1(-)		GRCh37	DELETION	10	75	Antisense Fusion	PRECISE	3to5	FAT1 (NM_005245) rearrangement: chr4:g.173406850_c.3099:FAT1del	yes	unknown	14221033	66806	108379	0	80
P-0073981-T01-IM7	SOMATIC	GALNTL6	GAB1	4	4	144359229	172857765	Exon 4 of GAB1(+)	Intron of GALNTL6(+):122Kb after exon 2		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {GALNTL6:GAB1}	PRECISE	5to3	GALNTL6 (NM_001034845) - GAB1 (NM_002039) rearrangement: c.138+121896:GALNTL6_c.671:GAB1dup			28498536	94066	141842	0	14
P-0079778-T01-IM7	SOMATIC	DRC4	FANCA	16	16	89862312	90092875	Intron of FANCA(-):1bp after exon 11	Intron of GAS8(+):1Kb before exon 2		GRCh37	INVERSION	10	27	Protein Fusion: out of frame  {DRC4:FANCA}	PRECISE	3to3	GAS8 (NM_001481) - FANCA (NM_000135) rearrangement: c.4-1169:GAS8_c.1006+2:FANCAinv	yes	unknown	230563	16788	119739	0	27
P-0027414-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48650450	48651652	Exon 3 of GATA1(+)	Exon 5 of GATA1(+)		GRCh37	INVERSION	10	65	GATA1-intragenic	PRECISE	5to5	GATA1 (NM_002049) rearrangement: c.420_c.818inv	yes	unknown	1202	2278	2878	0	79
P-0037718-T01-IM6	SOMATIC	GATA1	WNK3	X	X	48650328	54291385	Exon 3 of GATA1(+)	Intron of WNK3(-):6Kb before exon 11		GRCh37	DUPLICATION	6	4	GATA1-intragenic	PRECISE	5to3	GATA1 (NM_002049) rearrangement: c.298:GATA1_chrX:g.54291385dup	yes	unknown	5641057	76927	73342	0	4
P-0064875-T01-IM7	SOMATIC	GATA1	LOC441666	X	10	48649583	42808256	Exon 2 of GATA1(+)	IGR: 19Kb before LOC441666(-)		GRCh37	TRANSLOCATION	10	16	GATA1-intragenic	PRECISE	3to5	GATA1 (NM_002049) rearrangement: t(10;X)(q11.21;p11.23)(chr10:g.42808256::chrX:g.48649583)	yes	unknown	0	0	0	0	16
P-0045096-T01-IM6	SOMATIC	GATA1	HDAC6	X	X	48649577	48672540	Exon 2 of GATA1(+)	Intron of HDAC6(+):306bp before exon 11		GRCh37	DELETION	6	4	Protein Fusion: mid-exon  {GATA1:HDAC6}	PRECISE	3to5	GATA1 (NM_002049) - HDAC6 (NM_006044) rearrangement: c.61:GATA1_c.807-307:HDAC6del	yes	unknown	22963	11762	4170	0	4
P-0041196-T01-IM6	SOMATIC	GATA2	LINC00578	3	3	128205869	177218975	Exon 2 of GATA2(-)	5-UTR of LINC00578(+):252Kb before coding start		GRCh37	DELETION	10	22	GATA2-intragenic	PRECISE	3to5	GATA2 (NM_032638) rearrangement: c.6:GATA2_chr3:g.177218975del	yes	unknown	49013106	193050	238842	0	24
P-0071778-T01-IM7	SOMATIC	GATA3	GATA3	10	10	8110630	8111726	Intron of GATA3(+):805bp before exon 5	Intron of GATA3(+):165bp after exon 5		GRCh37	INVERSION	10	30	Antisense Fusion	PRECISE	3to3	GATA3 (NM_002051) rearrangement: c.922-806_c.1047+165inv	yes	unknown	1096	807	3427	0	27
P-0024308-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8115818	8118976	Exon 6 of GATA3(+)	Promoter of GATA3(+):22Kb from tx start		GRCh37	DELETION	10	51	Deletion within transcript : mid-exon	PRECISE	3to5	GATA3 (NM_002051) rearrangement: c.1164_c.*2990del	yes	unknown	3158	1015	1323	0	54
P-0020080-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8112508	8115833	Intron of GATA3(+):947bp after exon 5	Exon 6 of GATA3(+)		GRCh37	DELETION	10	34	Deletion within transcript : mid-exon	PRECISE	3to5	GATA3 (NM_002051) rearrangement: c.1047+947_c.1179del	yes	unknown	3325	1120	1137	0	33
P-0074647-T01-IM7	SOMATIC	GATA3	GATA3	10	10	8100538	8104332	Exon 3 of GATA3(+)	Intron of GATA3(+):2Kb before exon 4		GRCh37	DELETION	10	3	Deletion within transcript : mid-exon	PRECISE	3to5	GATA3 (NM_002051) rearrangement: c.512_c.779-1627del	yes	unknown	3794	2310	2031	0	3
P-0078106-T01-IM7	SOMATIC	GATA3	GATA3	10	10	8100776	8130668	Exon 3 of GATA3(+)	IGR: 34Kb before GATA3(+)		GRCh37	DELETION	0	73	GATA3-intragenic	IMPPRECISE	3to5	GATA3 (NM_002051) rearrangement: c.750:GATA3_chr10:g.8130668del	yes	unknown	29892	4119	4133	0	75
P-0076495-T01-IM7	SOMATIC	GATA3	GATA3	10	10	8115881	8116698	Exon 6 of GATA3(+)	3-UTR of GATA3(+):19Kb after coding stop		GRCh37	INVERSION	10	14	GATA3-intragenic	PRECISE	5to5	GATA3 (NM_002051) rearrangement: c.1227:GATA3_chr10:g.8116698inv	yes	unknown	817	926	1082	0	15
P-0009431-T01-IM5	SOMATIC	GATA3		10	10	8097810	25463753	Exon 2 of GATA3(+)	3-UTR of LOC100128811(-): 1Kb after coding stop		GRCh37	INVERSION			GATA3-intragenic	PRECISE	3to3	GATA3 (NM_002051) rearrangement : c.192:GATA3_chr10:g.25463753inv			17365943	34322	44442	0	43
P-0026253-T01-IM6	SOMATIC	GATA3		10	3	8106193	181861092	Intron of GATA3(+):92bp after exon 4	IGR: 191Kb before LINC01206(+)		GRCh37	TRANSLOCATION			GATA3-intragenic	IMPPRECISE	3to5	GATA3 (NM_002051) Rearrangement : t(3;10)(q26.33;p14)(chr3:g.181861092::chr10:g.8106193)			0	0	0	1	8
P-0057563-T01-IM7	SOMATIC	GATA3		10	10	8105912	8144572	Intron of GATA3(+):46bp before exon 4	IGR: 48Kb before GATA3(+)		GRCh37	DUPLICATION			GATA3-intragenic	PRECISE	5to3	GATA3 (NM_002051) rearrangement: c.779-47:GATA3_chr10:g.8144572dup			38660	4903	8389	0	25
P-0037175-T01-IM6	SOMATIC	GDPD1	SPOP	17	17	47696463	57328812	Exon 5 of SPOP(-)	Intron of GDPD1(+):3Kb after exon 4		GRCh37	INVERSION	10	18	Protein Fusion: mid-exon  {GDPD1:SPOP}	PRECISE	3to3	GDPD1 (NM_1825690) - SPOP (NM_001007228) rearrangement: c.367+2666:GDPD1_c.360:SPOPinv	yes	unknown	9632349	61898	63091	0	20
P-0025215-T01-IM6	SOMATIC	GEMIN5	RET								GRCh37				GEMIN5-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: GEMIN5-RET fusion. Note: The rearrangement is an in-frame fusion between genes GEMIN5 Exon24 (NM_015465) and RET Exon12 (NM_020975).							
P-0033644-T01-IM6	SOMATIC	GFPT2	FLT4	5	5	179758643	180057417	Intron of GFPT2(-):90bp before exon 5	Intron of FLT4(-):80bp before exon 4		GRCh37	DUPLICATION	0	5	Protein Fusion: in frame  {GFPT2:FLT4}	IMPPRECISE	5to3	GFPT2 (NM_005110) - FLT4 (NM_182925) Rearrangement: c.341-90:GFPT2_c.401-80:FLT4dup	yes	unknown	298774	43625	47377	0	5
P-0009482-T01-IM5	SOMATIC	GFRA1	CDKN2A	10	9	117963422	21994233	Intron of GFRA1(-): 8Kb after exon 5	Exon 1 of CDKN2A(-)		GRCh37	TRANSLOCATION			Antisense fusion	PRECISE	5to5	GFRA1 (NM_005264) - CDKN2Ap14ARF (NM_058195) rearrangement: t(9;10)(p21.3;q25.3)(chr9:g.21994233::chr10:g.117963422)			0	0	0	0	15
P-0032229-T01-IM6	SOMATIC	GJA1	ARID1B	6	6	121762939	157496213	5-UTR of GJA1(+):5Kb before coding start	Intron of ARID1B(+):962bp after exon 11		GRCh37	INVERSION	0	7	Antisense Fusion	IMPPRECISE	3to3	ARID1B (NM_020732) rearrangement: c.3135+962:ARID1B_chr6:g.121762939inv	yes	unknown	35733274	100431	144701	0	7
P-0041185-T01-IM6	SOMATIC	GLCCI1	ETV1								GRCh37				GLCCI1-ETV1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GLCCI1-ETV1 fusion. Note: The rearrangement is an in-frame fusion between genes GLCCI1 Exon1 (NM_138426) and ETV1 Exon10 (NM_004956).	yes	unknown					
P-0044410-T01-IM6	SOMATIC	GLI1	LRCOL1	12	12	57865421	133185440	Exon 12 of GLI1(+)	5-UTR of LRCOL1(-):5Kb before coding start		GRCh37	DELETION	10	57	Antisense Fusion	PRECISE	3to5	GLI1 (NM_005269) rearrangement: c.2898:GLI1_chr12:g.133185440del	yes	unknown	75320019	211393	214472	0	58
P-0039753-T01-IM6	SOMATIC	GLI1	LINC02388	12	12	57864649	59094643	Exon 12 of GLI1(+)	3-UTR of LOC101927653(-):81Kb after coding stop		GRCh37	INVERSION	10	77	GLI1-intragenic	PRECISE	3to3	GLI1 (NM_005269) rearrangement: c.2126:GLI1_chr12:g.59094643inv	yes	unknown	1229994	19689	16740	0	75
P-0068899-T02-IM7	SOMATIC	GLI1	GLI1	12	12	49378950	57861842	Promoter of WNT1(+):7Kb from tx start	Exon 10 of GLI1(+)		GRCh37	INVERSION	10	31	GLI1-intragenic	PRECISE	5to5	GLI1 (NM_005269) rearrangement: c.1143:GLI1_chr12:g.49378950inv	yes	unknown	8482892	227605	474907	0	35
P-0016627-T01-IM6	SOMATIC	GLI1		12	1	57857810	188655289	Exon 3 of GLI1(+)	IGR: 1Mb before BRINP3(-)		GRCh37	TRANSLOCATION			GLI1-intragenic	PRECISE	3to3	GLI1 (NM_005269)  rearrangement: t(1;12)(q31.1;q13.3)(chr1:g.188655289::chr12:g.57857810)			0	0	0	0	101
P-0018235-T01-IM6	SOMATIC	GLI1		12	12	57715760	57857515	IGR: 68Kb before R3HDM2(-)	Exon 2 of GLI1(+)		GRCh37	INVERSION			GLI1-intragenic	PRECISE	3to3	GLI1 (NM_005269) rearrangement: c.41_chr12:g.57715760inv			141755	1082	905	0	5
P-0037389-T01-IM6	SOMATIC	GLI1		12	12	47430985	57864277	IGR: 39Kb before AMIGO2(-)	Exon 12 of GLI1(+)		GRCh37	DELETION			GLI1-intragenic	PRECISE	3to5	GLI1 (NM_005269) rearrangement: c.1754:GLI1_chr12:g.47430985del			10433292	208838	268925	0	53
P-0046943-T01-IM6	SOMATIC	GLI1		12	12	57858665	116180623	Intron of GLI1(+):14bp after exon 4	IGR: 216Kb before MED13L(-)		GRCh37	INVERSION			GLI1-intragenic	PRECISE	3to3	GLI1 (NM_005269) rearrangement: c.389+14:GLI1_chr12:g.116180623inv			58321958	103966	142446	0	14
P-0076930-T01-IM7	SOMATIC	GLI1	EP400	12	12	57862166	132468540	Intron of GLI1(+):159bp after exon 10	Intron of EP400(+):2Kb after exon 5		GRCh37	DELETION	10	26	Protein Fusion: in frame  {GLI1:EP400}	PRECISE	3to5	GLI1 (NM_005269) - EP400 (NM_015409) rearrangement: c.1308+159:GLI1_c.1929+1517:EP400del	yes	unknown	74606374	469570	829687	0	26
P-0075752-T01-IM7	SOMATIC	GLI1	PPM1H	12	12	57865390	63292473	Exon 12 of GLI1(+)	Intron of PPM1H(-):36Kb after exon 1		GRCh37	INVERSION	0	8	Protein Fusion: mid-exon  {GLI1:PPM1H}	IMPPRECISE	3to3	GLI1 (NM_005269) - PPM1H (NM_020700) rearrangement: c.2867:GLI1_c.245+35799:PPM1Hinv	yes	unknown	5427083	44709	48186	0	8
P-0025086-T01-IM6	SOMATIC	GLI1		12	2	57864177	7076725	Exon 12 of GLI1(+)	5-UTR of RNF144A(+):60Kb before coding start		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {RNF144A:GLI1}	PRECISE	5to3	GLI1 (NM_005269) rearrangement: t(2;12)(p25.2;q13.3)(chr2:g.7076725::chr12:g.57864177)			0	0	0	0	5
P-0084821-T01-IM7	SOMATIC	GLI1	PIP4K2C	12	12	57863511	57986375	Intron of GLI1(+):30bp after exon 11	Intron of PIP4K2C(+):1Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {GLI1:PIP4K2C}	PRECISE	3to5	GLI1 (NM_005269) - PIP4K2C (NM_024779) rearrangement: c.1576+30:GLI1_c.174+1129:PIP4K2Cdel			122864	14564	14723	0	3
P-0044317-T01-IM6	SOMATIC	GLI1		12	12	49358370	57861730	Promoter of WNT10B(-):752bp from tx start	Intron of GLI1(+):46bp before exon 10		GRCh37	INVERSION			Transcript Fusion {WNT10B:GLI1}	PRECISE	5to5	GLI1 (NM_005269) rearrangement: c.1078-47:GLI1_chr12:g.49358370inv			8503360	263368	518044	0	44
P-0003130-T01-IM5	SOMATIC	GLI1	TSPAN8	12	12	57864464	71414253	Exon 11 of GLI1(+)	IGR: 105Kb before TSPAN8(-)		GRCh37	DUPLICATION	29	17	TSPAN8-GLI1 fusion	PRECISE	5to3		yes	unknown	13549789	71737	70316	1	19
P-0027313-T02-IM6	SOMATIC	GLIS1	JAK1	1	1	54094331	65305384	5-UTR of GLIS1(-):122Kb before coding start	Exon 20 of JAK1(-)		GRCh37	DELETION	10	87	Protein Fusion: mid-exon  {JAK1:GLIS1}	PRECISE	3to5	JAK1 (NM_002227) rearrangement: c.2744:JAK1_chr1:g.54094331del	yes	unknown	11211053	18906	28995	0	92
P-0002840-T01-IM3	SOMATIC	GLRA2	KDM5C	X	X	14725392	53222372	Intron of GLRA2(+): 16Kb after exon 8	Exon 26 of KDM5C(-)		GRCh37	INVERSION	4	5	Protein fusion: mid-exon (KDM5C-GLRA2)	PRECISE	5to5		yes	unknown	38496980	238470	259353	0	5
P-0034818-T01-IM6	SOMATIC	GNA11	HSF2	19	6	3119247	122459052	Exon 6 of GNA11(+)	IGR: 262Kb before HSF2(+)		GRCh37	TRANSLOCATION	10	75	GNA11-intragenic	PRECISE	3to3	GNA11 (NM_002067) rearrangement: t(6;19)(q22.31;p13.3)(chr6:g.122459052::chr19:g.3119247)	yes	unknown	0	0	0	0	75
P-0077618-T01-IM7	SOMATIC	GNA11	DNAJB1	19	19	3094935	14628372	Intron of GNA11(+):150bp after exon 1	Intron of DNAJB1(-):514bp before exon 2		GRCh37	INVERSION	10	36	Protein Fusion: in frame  {GNA11:DNAJB1}	PRECISE	3to3	GNA11 (NM_002067) - DNAJB1 (NM_006145) rearrangement: c.136+150:GNA11_c.212-514:DNAJB1inv	yes	unknown	11533437	410494	614174	0	36
P-0037477-T01-IM6	SOMATIC	GNAI2	MYD88	3	3	38181916	50293515	Exon 3 of MYD88(+)	Intron of GNAI2(+):108bp before exon 5		GRCh37	DUPLICATION	10	9	Protein Fusion: mid-exon  {GNAI2:MYD88}	PRECISE	5to3	GNAI2 (NM_002070) - MYD88 (NM_002468) Rearrangement : c.465-109:GNAI2_c.540:MYD88dup	yes	unknown	12111599	160872	263264	0	14
P-0032225-T01-IM6	SOMATIC	GNAQ	DLGAP3	9	1	80430715	35382168	Intron of GNAQ(-):29bp before exon 3	5-UTR of DLGAP3(-):50Kb before coding start		GRCh37	TRANSLOCATION	10	23	Transcript Fusion {DLGAP3:GNAQ}	PRECISE	3to5	GNAQ (NM_002072) rearrangement: t(1;9)(p34.3;q21.2)(chr1:g.35382168::chr9:g.80430715)	yes	unknown	0	0	0	0	32
P-0085609-T01-IM7	SOMATIC	GNAS		20	20	57450306	57478699	Intron of GNAS(+):20Kb after exon 1	Intron of GNAS(+):27bp before exon 5		GRCh37	DELETION			Deletion of 3 exons : out of frame	PRECISE	3to5	GNAS (NM_000516) rearrangement: c.313-28:GNAS_chr20:g.57450306del			28393	3603	3011	0	66
P-0031891-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57480535	57484217	Exon 6 of GNAS(+)	Exon 7 of GNAS(+)		GRCh37	DELETION	7	2	Deletion within transcript : mid-exon	PRECISE	3to5	GNAS (NM_000516) rearrangement: c.530_c.531del	yes	unknown	3682	791	1321	0	2
P-0020644-T01-IM6	SOMATIC	GNAS		20	20	57478864	57480500	Intron of GNAS(+):18bp after exon 5	Exon 6 of GNAS(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	GNAS (NM_000516) rearrangement: c.432+18_c.495del			1636	703	700	0	46
P-0064741-T01-IM7	SOMATIC	GNAS	GNAS	20	20	57478519	57484052	Intron of GNAS(+):66bp before exon 4	Intron of GNAS(+):164bp before exon 7		GRCh37	DUPLICATION	10	133	Duplication of 3 exons : in frame	PRECISE	5to3	GNAS (NM_000516) rearrangement: c.258-67_c.531-165dup	yes	unknown	5533	3628	6422	0	137
P-0053613-T02-IM6	SOMATIC	GNAS	LINC00309	20	2	57485784	64415884	Exon 13 of GNAS(+)	3-UTR of LINC00309(-):17Kb after coding stop		GRCh37	TRANSLOCATION	10	14	GNAS-intragenic	PRECISE	5to3	GNAS (NM_000516) rearrangement: t(2;20)(p14;q13.32)(chr2:g.64415884::chr20:g.57485784)	yes	unknown	0	0	0	0	14
P-0056626-T01-IM6	SOMATIC	GNAS	GNAS	20	20	37830672	57473996	IGR: 12Kb before LOC339568(-)	Exon 3 of GNAS(+)		GRCh37	INVERSION	10	34	GNAS-intragenic	PRECISE	5to5	GNAS (NM_000516) rearrangement: c.213:GNAS_chr20:g.37830672inv	yes	unknown	19643324	137971	211762	0	34
P-0080355-T01-IM7	SOMATIC	GNAS	UNC13C	20	15	57485407	54109762	Exon 12 of GNAS(+)	IGR: 195Kb before UNC13C(+)		GRCh37	TRANSLOCATION	10	16	GNAS-intragenic	PRECISE	5to5	GNAS (NM_000516) rearrangement: t(15;20)(q21.3;q13.32)(chr15:g.54109762::chr20:g.57485407)	yes	unknown	0	0	0	0	23
P-0018761-T01-IM6	SOMATIC	GNAS		20	20	54110650	57485104	IGR: 71Kb before LINC01440(+)	Exon 11 of GNAS(+)		GRCh37	DELETION			GNAS-intragenic	PRECISE	3to5	GNAS (NM_000516) Rearrangement : c.938:GNAS_chr20:g.54110650del			3374454	35460	100332	0	12
P-0025349-T01-IM6	SOMATIC	GNAS		20	20	38848190	57485603	IGR: 215Kb before LINC01370(+)	Intron of GNAS(+):134bp before exon 13		GRCh37	DELETION			GNAS-intragenic	PRECISE	3to5	GNAS (NM_000516) rearrangement: chr20:g.38848190_c.1039-135del			18637413	112036	119173	0	20
P-0027307-T01-IM6	SOMATIC	GNAS		20	2	57466801	142349760	Exon 1 of GNAS(+)	Intron of LRP1B(-):112Kb before exon 3		GRCh37	TRANSLOCATION			GNAS-intragenic	PRECISE	5to3	GNAS (NM_000516) rearrangement: t(2;20)(q22.2;q13.32)(chr2:g.142349760::chr20:g.57466801)			0	0	0	0	7
P-0035226-T01-IM6	SOMATIC	GNAS		20	20	57484398	57485888	Intron of GNAS(+):6bp before exon 8	3-UTR of GNAS(+):19Kb after coding stop		GRCh37	INVERSION			GNAS-intragenic	PRECISE	5to5	GNAS (NM_000516) rearrangement: c.586-7_c.*4inv			1490	4055	6582	0	20
P-0084721-T01-IM7	SOMATIC	GNAS		20	20	57482923	57485379	Intron of GNAS(+):1Kb before exon 7	Intron of GNAS(+):9bp before exon 12		GRCh37	INVERSION			GNAS-intragenic	PRECISE	5to5	GNAS (NM_000516) rearrangement: c.531-1294_c.971-10inv			2456	4721	8572	0	9
P-0040511-T01-IM6	SOMATIC	GNAS	GDPD5	20	11	57474193	75150246	Intron of GNAS(+):153bp after exon 3	Intron of GDPD5(-):677bp after exon 15		GRCh37	TRANSLOCATION	10	19	Protein Fusion: in frame  {GNAS:GDPD5}	PRECISE	3to3	GNAS (NM_000516) - GDPD5 (NM_030792) rearrangement: t(11;20)(q13.4;q13.32)(chr11:g.75150246::chr20:g.57474193)	yes	unknown	0	0	0	0	17
P-0061520-T01-IM7	SOMATIC	GNAS	GNAS	20	20	2632568	57484795	Promoter of NOP56(+):609bp from tx start	Exon 10 of GNAS(+)		GRCh37	DELETION	10	20	Protein Fusion: mid-exon  {NOP56:GNAS}	PRECISE	3to5	GNAS (NM_000516) rearrangement: c.775:GNAS_chr20:g.2632568del	yes	unknown	54852227	518659	569992	0	24
P-0033615-T01-IM6	SOMATIC	GNAS	CREM	20	10	57479028	35491448	Intron of GNAS(+):182bp after exon 5	Intron of CREM(+):1Kb after exon 2		GRCh37	TRANSLOCATION	10	9	Protein Fusion: out of frame  {GNAS:CREM}	PRECISE	3to5	GNAS (NM_000516) - CREM (NM_181571) rearrangement: t(10;20)(p11.21;q13.32)(chr10:g.35491448::chr20:g.57479028)	yes	unknown	0	0	0	0	9
P-0069809-T01-IM7	SOMATIC	GNB1	ARID1A	1	1	1720319	27053009	Intron of GNB1(-):172bp after exon 10	Intron of ARID1A(+):3Kb before exon 2		GRCh37	INVERSION	0	17	Protein Fusion: out of frame  {GNB1:ARID1A}	IMPPRECISE	5to5	GNB1 (NM_002074) - ARID1A (NM_006015) rearrangement: c.916+173:GNB1_c.1138-3133:ARID1Ainv	yes	unknown	25332690	244142	665616	0	19
P-0018030-T01-IM6	SOMATIC	GNG7	SMARCA4	19	19	2566206	11098418	5-UTR of GNG7(-):51Kb before coding start	Exon 6 of SMARCA4(+)		GRCh37	INVERSION	10	26	Protein Fusion: mid-exon  {GNG7:SMARCA4}	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: c.chr19:g.25566206_c.936inv	yes	unknown	8532212	199402	304588	0	35
P-0054048-T01-IM6	SOMATIC	GOLGA3	POLE	12	12	133241981	133372834	Exon 21 of POLE(-)	Intron of GOLGA3(-):28bp before exon 11		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {GOLGA3:POLE}	PRECISE	3to5	GOLGA3 (NM_005895) - POLE (NM_006231) rearrangement: c.2101-28:GOLGA3_c.2375:POLEdel	yes	unknown	130853	26831	44562	0	22
P-0021147-T01-IM6	SOMATIC	GOPC	ROS1								GRCh37				GOPC-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GOPC-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes GOPC Exon4 (NM_020399) and ROS1 Exon36 (NM_002944).	yes	unknown					
P-0021147-T01-IM6	SOMATIC	GOPC	ROS1	6	6	117641701	117895530	Intron of ROS1(-):508bp before exon 36	Intron of GOPC(-):735bp before exon 5		GRCh37	DELETION	10	53	Protein Fusion: in frame  {GOPC:ROS1}	PRECISE	3to5	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-4 fused with ROS1 exons 36-43) :c.651-735:GOPC_c.5778-508:ROS1del	yes	unknown	253829	185598	102079	0	62
P-0036265-T04-IM7	SOMATIC	GOPC	ROS1	6	6	117644742	117886239	Intron of ROS1(-):752bp after exon 34	Intron of DCBLD1(+):5Kb before exon 15		GRCh37	DELETION	10	6	ROS1-GOPC fusion	PRECISE	3to5	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-8 fused to ROS1 exons 34-43): c.1259-1692:GOPC_c.5641+753:ROS1del	yes	unknown	241497	115300	54890	0	6
P-0012176-T01-IM5	SOMATIC	GOSR1	NF1	17	17	28802813	29496867	Promoter of GOSR1(+): 2Kb from tx start	Intron of NF1(+): 42bp before exon 5		GRCh37	DELETION	16	8	Transcript fusion (GOSR1-NF1)	PRECISE	3to5	NF1 (NM_001042492) Rearrangement : chr17:g.28802813_c.480-42:NF1del	yes	unknown	694054	9042	6193	0	8
P-0016809-T02-IM6	SOMATIC	CMKLR2-AS	IDH1	2	2	207074689	209113139	5-UTR of GPR1-AS(+):56Kb before coding start	Exon 4 of IDH1(-)		GRCh37	INVERSION	10	7	Protein Fusion: mid-exon  {IDH1:CMKLR2-AS}	PRECISE	5to5	IDH1 (NM_005896) rearrangement: c.368:IDH1_g.207074689inv	yes	unknown	2038450	7403	3517	0	8
P-0022310-T01-IM6	SOMATIC	GPR137	RPS6KA4	11	11	64053207	64137399	Intron of GPR137(+):774bp before exon 3	Intron of RPS6KA4(+):34bp after exon 14		GRCh37	DUPLICATION	10	27	Protein Fusion: in frame  {RPS6KA4:GPR137}	PRECISE	5to3	RPS6KA4 (NM_003942) - GPR137 (NM_001170726) Rearrangement: c.1797+34:RPS6KA4_c.160-775:GPR137dup	yes	unknown	84192	26038	31656	0	29
P-0034928-T01-IM6	SOMATIC	GPR160	PRKCI	3	3	169756755	169977756	5-UTR of GPR160(+):45Kb before coding start	Exon 3 of PRKCI(+)		GRCh37	DELETION	10	16	Protein Fusion: mid-exon  {GPR160:PRKCI}	PRECISE	3to5	PRKCI (NM_002740) rearrangement: c.224-1:PRKCI_chr3:g.169756755del	yes	unknown	221001	3209	3934	0	21
P-0018243-T01-IM6	SOMATIC	GPRC5C	MET								GRCh37				GPRC5C-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GPRC5C-MET fusion. Note: The rearrangement is an in-frame fusion between genes GPRC5C Exon2 (NM_018653) and MET Exon15 (NM_000245).	yes	unknown					
P-0018243-T01-IM6	SOMATIC	GPRC5C	MET	17	7	72439446	116413793	Intron of GPRC5C(+):510bp before exon 3	Intron of MET(+):1Kb before exon 15		GRCh37	TRANSLOCATION	10	27	Protein Fusion: in frame  {GPRC5C:MET}	PRECISE	3to5	GPRC5C (NM_018653) - MET (NM_000245) rearrangement: t(7;17)(q31.2;q25.1)(chr7:g.116413793::chr17:g.72439446)	yes	unknown	0	0	0	0	28
P-0051674-T01-IM6	SOMATIC	GPS2	EIF2AK4	17	15	7216806	40262316	Intron of GPS2(-):18bp before exon 8	Intron of EIF2AK4(+):2Kb after exon 9		GRCh37	TRANSLOCATION	10	20	Antisense Fusion	PRECISE	5to3	GPS2 (NM_004489) rearrangement: t(15;17)(q15.1;p13.1)(chr15:g.40262316::chr17:g.7216806)	yes	unknown	0	0	0	0	19
P-0040988-T01-IM6	SOMATIC	GPS2		17	17	7217760	7251129	Intron of GPS2(-):38bp before exon 4	Intron of ACAP1(+):111bp before exon 15		GRCh37	DUPLICATION			Antisense Fusion	PRECISE	5to3	GPS2 (NM_004489) rearrangement: c.205-38:GPS2_chr17:g.7251129dup			33369	2952	3302	0	54
P-0060717-T01-IM7	SOMATIC	GPS2	TNK1	17	17	7217441	7283565	Exon 5 of GPS2(-)	Promoter of TNK1(+):727bp from tx start		GRCh37	DELETION	10	22	GPS2-intragenic	PRECISE	3to5	GPS2 (NM_004489) rearrangement: c.355:GPS2_chr17:g.7283565del	yes	unknown	66124	5756	7440	0	25
P-0075269-T01-IM7	SOMATIC	GPS2	ALOXE3	17	17	7217710	8023269	Exon 4 of GPS2(-)	Promoter of ALOXE3(-):24Kb from tx start		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {ALOXE3:GPS2}	PRECISE	3to5	GPS2 (NM_004489) rearrangement: c.217:GPS2_chr17:g.8023269del	yes	unknown	805559	72838	62347	0	22
P-0005011-T01-IM5	SOMATIC	GPS2	TP53	17	17	7216983	7579508	Exon 7 of GPS2(-)	Exon 4 of TP53(-)		GRCh37	DELETION	35	31	Protein fusion: mid-exon (TP53-GPS2)	PRECISE	3to5	TP53 (NM_000546) - GPS2 (NM_004489) rearrangement: c.179:TP53_c.538:GPS2del	yes	unknown	362525	21892	20431	0	29
P-0072873-T01-IM7	SOMATIC	GRB7	CDK12	17	17	37627987	37902690	Exon 2 of CDK12(+)	Intron of GRB7(+):235bp after exon 14		GRCh37	DUPLICATION	0	643	Protein Fusion: mid-exon  {GRB7:CDK12}	IMPPRECISE	5to3	GRB7 (NM_005310) - CDK12 (NM_016507) rearrangement: c.1452+235:GRB7_c.1902:CDK12dup	yes	unknown	274703	73549	2737199	0	950
P-0031582-T01-IM6	SOMATIC	GREB1L	LMO1	18	11	18956391	8246318	5-UTR of GREB1L(+):7Kb before coding start	Intron of LMO1(-):50bp before exon 4		GRCh37	TRANSLOCATION	10	13	Transcript Fusion {GREB1L:LMO1}	PRECISE	3to3	GREB1L (NM_001142966) - LMO1 (NM_002315) rearrangement: t(11;18)(p15.4;q11.1)(chr11:g.8246318::chr18:g.18956391)	yes	unknown	0	0	0	0	14
P-0076542-T01-IM7	SOMATIC	GRIA4	PGR	11	11	100933600	105639406	Intron of PGR(-):117bp before exon 4	Intron of GRIA4(+):15Kb after exon 3		GRCh37	INVERSION	10	240	Protein Fusion: in frame  {GRIA4:PGR}	PRECISE	3to3	GRIA4 (NM_000829) - PGR (NM_000926) rearrangement: c.487+15460:GRIA4_c.1907-117:PGRinv	yes	unknown	4705806	49741	84480	0	239
P-0017817-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857371	9857965	Exon 13 of GRIN2A(-)	Exon 13 of GRIN2A(-)		GRCh37	DELETION	0	81	Deletion within transcript : mid-exon	IMPPRECISE	3to5	GRIN2A (NM_001134407) rearrangement: c.3436_c.4030del	yes	unknown	594	2485	1941	0	89
P-0074774-T01-IM7	SOMATIC	GRIN2A	GRIN2A	16	16	9909418	9928018	Intron of GRIN2A(-):7Kb after exon 10	Exon 8 of GRIN2A(-)		GRCh37	DELETION	10	60	Deletion within transcript : mid-exon	PRECISE	3to5	GRIN2A (NM_001134407) rearrangement: c.1721_c.2168+6703del	yes	unknown	18600	3309	6066	0	62
P-0074579-T01-IM7	SOMATIC	GRIN2A		16	16	10032198	10054665	Exon 3 of GRIN2A(-)	Intron of GRIN2A(-):22Kb before exon 3		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	GRIN2A (NM_001134407) rearrangement: c.415-22257_c.625dup			22467	1299	1606	0	17
P-0028149-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857064	10010965	Exon 13 of GRIN2A(-)	Intron of GRIN2A(-):21Kb after exon 3		GRCh37	INVERSION	10	5	GRIN2A-intragenic	PRECISE	3to3	GRIN2A (NM_001134407) rearrangement: c.4337_c.1007+20851inv	yes	unknown	153901	22161	24594	0	5
P-0022566-T01-IM6	SOMATIC	GRIN2A		16	16	10032373	18959069	Exon 3 of GRIN2A(-)	IGR: 36Kb before TMC7(+)		GRCh37	INVERSION			GRIN2A-intragenic	PRECISE	5to5	GRIN2A (NM_001134407) rearrangement: chr16:g.18959069_c.450:GRIN2inv			8926696	34157	24263	0	7
P-0050541-T01-IM6	SOMATIC	GRIN2A	FLJ21408	16	16	10032177	27280740	Exon 3 of GRIN2A(-)	5-UTR of FLJ21408(+):21Kb before coding start		GRCh37	INVERSION	10	18	Protein Fusion: mid-exon  {GRIN2A:FLJ21408}	PRECISE	5to5	GRIN2A (NM_001134407) rearrangement: c.646:GRIN2A_chr16:g.27280740inv	yes	unknown	17248563	59577	100577	0	20
P-0034781-T01-IM6	SOMATIC	GRIPAP1	RET								GRCh37				GRIPAP1-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: GRIPAP1-RET fusion. Note: The rearrangement is an in-frame fusion between genes GRIPAP1 Exon25 (NM_020137) and RET Exon12 (NM_020975).	yes	unknown					
P-0034781-T01-IM6	SOMATIC	GRIPAP1	RET	X	10	48831008	43611853	Intron of GRIPAP1(-):311bp before exon 26	Intron of RET(+):178bp before exon 12		GRCh37	TRANSLOCATION	10	29	Protein Fusion: in frame  {GRIPAP1:RET}	PRECISE	5to5	GRIPAP1 (NM_020137) - RET (NM_020975) rearrangement: t(X;10)(p11.23q11.21)(chrX:g.48831008::chr10:g.43611853)	yes	unknown	0	0	0	0	31
P-0019022-T02-IM6	SOMATIC	GRK4	FGFR3	4	4	1795705	2997210	Exon 2 of FGFR3(+)	Intron of GRK4(+):3Kb after exon 3		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {GRK4:FGFR3}	PRECISE	5to3	GRK4 (NM_182982) - FGFR3 (NM_000142) rearrangement: c.339+3191:GRK4_c.44:FGFR3dup			1201505	95792	112480	0	40
P-0012288-T01-IM5	SOMATIC	GRK5	NSD1	10	5	121033310	176721806	Intron of GRK5(+): 53Kb before exon 2	Exon 24 of NSD1(+)		GRCh37	TRANSLOCATION	15	47	Antisense fusion	PRECISE	3to3	NSD1 (NM_022455) - GRK5 (NM_005308) rearrangement: t(5;10)(q35.3; q26.1)(chr5:g.176721806::chr10:g.121033310)	yes	unknown	0	0	0	0	44
P-0075541-T01-IM7	SOMATIC	GSK3B	GSK3B	3	3	119585462	119586180	Exon 9 of GSK3B(-)	Intron of GSK3B(-):705bp before exon 9		GRCh37	INVERSION	4	2	Antisense Fusion	PRECISE	5to5	GSK3B (NM_002093) rearrangement: c.910-705_c.923inv	yes	unknown	718	347	365	0	2
P-0086681-T01-IM7	SOMATIC	GSK3B		3	3	119585454	119586188	Exon 9 of GSK3B(-)	Intron of GSK3B(-):713bp before exon 9		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	GSK3B (NM_002093) rearrangement: c.910-713_c.931inv			734	384	306	0	5
P-0039027-T01-IM6	SOMATIC	GSK3B	GSK3B	3	3	119613357	119634825	Intron of GSK3B(-):11Kb after exon 7	Intron of GSK3B(-):65bp after exon 5		GRCh37	DELETION	0	6	Deletion of 2 exons : out of frame	IMPPRECISE	3to5	GSK3B (NM_002093) rearrangement: c.608+66_c.813+11245del	yes	unknown	21468	1462	1431	0	6
P-0042785-T01-IM6	SOMATIC	GSK3B	FGFR1								GRCh37				GSK3B-FGFR1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GSK3B-FGFR1 fusion. Note: The rearrangement is a fusion between genes GSK3B Exon1 (NM_002093) and FGFR1 Exon2 (NM_015850).	yes	unknown					
P-0040472-T01-IM6	SOMATIC	GSK3B	GSK3B	8	3	49176750	119624484	IGR: 256Kb before UBE2V2(+)	Intron of GSK3B(-):117bp after exon 7		GRCh37	TRANSLOCATION	10	31	GSK3B-intragenic	PRECISE	3to5	GSK3B (NM_002093) rearrangement: t(3;8)(q13.33;q11.21)(chr3:g.119624484::chr8:g.49176750)	yes	unknown	0	0	0	0	31
P-0050392-T01-IM6	SOMATIC	GSK3B		3	3	119585458	119586226	Exon 9 of GSK3B(-)	Intron of GSK3B(-):751bp before exon 9		GRCh37	INVERSION			GSK3B-intragenic	PRECISE	3to3	GSK3B (NM_002093) rearrangement: c.910-751_c.927inv			768	381	178	0	3
P-0001297-T01-IM3	SOMATIC	GSK3B	FSTL1	3	3	119721066	120146959	Exon 2 of GSK3B(-)	Intron of FSTL1(-): 12Kb before exon 3		GRCh37	DUPLICATION	17	5	Protein fusion: mid-exon (GSK3B-FSTL1)	PRECISE	5to3	None	yes	unknown	425893	1674	3529	0	6
P-0054046-T01-IM6	SOMATIC	GTF2IRD1	BRAF								GRCh37				GTF2IRD1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GTF2IRD1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes GTF2IRD1 Exon22 (NM_016328) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0069864-T01-IM7	SOMATIC	GTF2IRD1	BRAF	7	7	74002423	140483562	Intron of GTF2IRD1(+):2Kb before exon 23	Intron of BRAF(-):605bp before exon 10		GRCh37	INVERSION	10	12	Protein Fusion: in frame  {GTF2IRD1:BRAF}	PRECISE	3to3	GTF2IRD1 (NM_005685) - BRAF (NM_004333) fusion: c.2321-1757:GTF2IRD1_c.1178-605:BRAFinv	yes	unknown	66481139	327518	543689	0	12
P-0049355-T01-IM6	SOMATIC	H3F3B	UNK	17	17	73774761	73797185	Exon 4 of H3F3B(-)	Intron of UNK(+):9Kb before exon 2		GRCh37	INVERSION	10	24	Protein Fusion: mid-exon  {H3F3B:UNK}	PRECISE	5to5	H3F3B (NM_005324) - UNK (NM_001080419) rearrangement: c.326:H3F3B_c.105-8656:UNKinv	yes	unknown	22424	3077	6066	0	29
P-0043242-T01-IM6	SOMATIC	H3F3C	H3F3C	12	12	25464235	31944791	IGR: 107Kb before KRAS(-)	Exon 1 of H3F3C(-)		GRCh37	DELETION	10	9	H3F3C-intragenic	PRECISE	3to5	H3F3C (NM_001013699) rearrangement: c.310:H3F3C_chr12:g.25464235del	yes	unknown	6480556	6224	9095	0	16
P-0036181-T01-IM6	SOMATIC	HCFC1	ETV6	X	12	153221893	11905367	Intron of HCFC1(-):31bp before exon 16	Intron of ETV6(+):16bp before exon 2		GRCh37	TRANSLOCATION	0	48	Protein Fusion: out of frame  {HCFC1:ETV6}	IMPPRECISE	5to5	HCFC1 (NM_005334) - ETV6 (NM_0019870) rearrangement: t(X;12)(q28;p13.2)(chrX:g.153221893::chr12:g.11905367)	yes	unknown	0	0	0	0	53
P-0024872-T01-IM6	SOMATIC	HCN2	BRD4	19	19	587714	15374271	Promoter of HCN2(+):2Kb from tx start	Exon 7 of BRD4(-)		GRCh37	DELETION	10	5	Antisense Fusion	PRECISE	3to5	BRD4 (NM_058243) rearrangement: c.1301:BRD4_chr19:g.587714del	yes	unknown	14786557	521687	453394	0	6
P-0031476-T01-IM6	SOMATIC	HDAC2	ROS1								GRCh37				HDAC2-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: HDAC2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes HDAC2 Exon1 (NM_001527) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0024571-T01-IM6	SOMATIC	HDAC5	PIK3CA								GRCh37				HDAC5-PIK3CA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: HDAC5-PIK3CA fusion. Note: The rearrangement is an in-frame fusion between genes HDAC5 Exon1 (NM_001015053) and PIK3CA Exon1 (NM_006218). PMID: 26000489	yes	unknown					
P-0017882-T01-IM6	SOMATIC	HDAC9	XPO1	7	2	18926552	61721253	Intron of HDAC9(+):12Kb after exon 21	Intron of XPO1(-):27bp before exon 12		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {HDAC9:XPO1}	PRECISE	3to3	HDAC9 (NM_178425) - XPO1 (NM_003400) rearrangement: t(2;7)(p15;p21.2)(chr2:g.61721253::chr7:g.18926552)			0	0	0	0	195
P-0002245-T01-IM3	SOMATIC	HEATR2	CARD11	7	7	798921	2987321	Intron of HEATR2(+): 2Kb after exon 6	Exon 3 of CARD11(-)		GRCh37	DELETION	58	7	Antisense fusion	PRECISE	3to5		yes	unknown	2188400	41023	38158	0	28
P-0006086-T01-IM5	SOMATIC	HELZ	NEGR1	17	1	65231020	72748066	5-UTR of HELZ(-): 16Kb before coding start	Exon 1 of NEGR1(-)		GRCh37	TRANSLOCATION	0	18	Protein fusion: mid-exon (HELZ-NEGR1)	IMPRECISE	5to3	HELZ (NM_014877) - NEGR1 (NM_173808) Rearrangement :  t(17;1)(chr17q24.2;chr1p31.1)(chr17:g.65231020::chr1:g.72748066)	yes	unknown	0	0	0	0	16
P-0047183-T02-IM6	SOMATIC	HGF	HGF	7	7	81330692	81331980	Promoter of HGF(-):751bp from tx start	Exon 18 of HGF(-)		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	HGF (NM_000601) rearrangement: c.2104:HGF_chr7:g.81330692inv	yes	unknown	1288	339	491	0	19
P-0076124-T01-IM7	SOMATIC	HGF	HGF	7	7	70189829	81340786	Intron of AUTS2(+):26Kb after exon 6	Intron of HGF(-):10bp after exon 12		GRCh37	DELETION	10	19	Antisense Fusion	PRECISE	3to5	HGF (NM_000601) rearrangement: c.1444+11:HGF_chr7:g.70189829del	yes	unknown	11150957	66271	103045	0	19
P-0053888-T01-IM6	SOMATIC	HGF	HGF	7	7	81372163	81372744	Intron of HGF(-):505bp after exon 7	Exon 7 of HGF(-)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	HGF (NM_000601) rearrangement:  c.865+506_c.790del	yes	unknown	581	1090	540	0	16
P-0018848-T01-IM6	SOMATIC	HGF	HGF	7	7	81368838	81381588	Intron of HGF(-):4Kb after exon 7	Intron of HGF(-):10bp before exon 5		GRCh37	DUPLICATION	10	11	Duplication of 3 exons : out of frame	PRECISE	5to3	HGF (NM_000601) Rearrangement : c.483-10_c.865+3831dup	yes	unknown	12750	3768	7373	0	11
P-0059466-T02-IM7	SOMATIC	HGF	GRM3	7	7	81372758	85873551	Exon 7 of HGF(-)	IGR: 400Kb before GRM3(+)		GRCh37	INVERSION	10	15	HGF-intragenic	PRECISE	5to5	HGF (NM_000601) rearrangement: c.776:HGF_chr7:g.85873551inv	yes	unknown	4500793	15579	29334	0	15
P-0072396-T01-IM7	SOMATIC	HGF		7	2	81387930	107386015	Intron of HGF(-):77bp after exon 3	IGR: 32Kb before ST6GAL2(-)		GRCh37	TRANSLOCATION			HGF-intragenic	PRECISE	5to5	HGF (NM_000601) rearrangement: t(2;7)(q12.2;q21.11)(chr2:g.107386015::chr7:g.81387930)			0	0	0	0	20
P-0073610-T01-IM7	SOMATIC	HGF	CACNA2D1	7	7	81335042	81603964	Exon 16 of HGF(-)	Intron of CACNA2D1(-):96bp before exon 25		GRCh37	DUPLICATION	10	16	Protein Fusion: mid-exon  {HGF:CACNA2D1}	PRECISE	5to3	HGF (NM_000601) - CACNA2D1 (NM_000722) rearrangement: c.1785:HGF_c.1956-96:CACNA2D1dup	yes	unknown	268922	18677	31213	0	15
P-0023366-T01-IM6	SOMATIC	HGF	LAMB4	7	7	81334770	107736523	Exon 17 of HGF(-)	Intron of LAMB4(-):741bp before exon 12		GRCh37	DUPLICATION	10	3	Protein Fusion: mid-exon  {HGF:LAMB4}	PRECISE	5to3	HGF (NM_000601) - LAMB4 (NM_007356) rearrangement: c.1946:HGF_c.1361-741:LAMB4dup	yes	unknown	26401753	68485	73440	0	3
P-0039229-T01-IM6	SOMATIC	HIGD1A	CTNNB1	3	3	41266381	42831681	Intron of CTNNB1(+):63bp before exon 4	Intron of HIGD1A(-):4Kb after exon 2		GRCh37	INVERSION	10	52	Protein Fusion: in frame  {HIGD1A:CTNNB1}	PRECISE	5to5	HIGD1A (NM_001099668) - CTNNB1 (NM_001904) rearrangement: c.139+3968:HIGD1A_c.242-64:CTNNB1inv	yes	unknown	1565300	14449	22713	0	56
P-0047433-T01-IM6	SOMATIC	HIST1H1C	HIST1H1C	6	6	26053411	26056407	Promoter of HIST1H1C(-):3Kb from tx start	Exon 1 of HIST1H1C(-)		GRCh37	DUPLICATION	10	96	Duplication within transcript : mid-exon	PRECISE	5to3	HIST1H1C (NM_005319) rearrangement: c.250:HIST1H1C_chr6:g.26053411dup	yes	unknown	2996	1643	3749	0	102
P-0003216-T01-IM5	SOMATIC	HIST1H2BC	HIST1H2BD	6	6	26116007	26158644	IGR: 8Kb before HIST1H2BC(-)	Exon 1 of HIST1H2BD(+)		GRCh37	DELETION	18	10	HIST1H2BD-HIST1H2BC fusion	PRECISE	3to5		yes	unknown	42637	5309	4630	0	11
P-0017368-T01-IM6	SOMATIC	HIST1H2BD	PTPRK	6	6	26158623	128386296	Exon 1 of HIST1H2BD(+)	Intron of PTPRK(-):357bp before exon 13		GRCh37	INVERSION	0	615	Protein Fusion: mid-exon  {HIST1H2BD:PTPRK}	IMPPRECISE	3to3	HIST1H2BD (NM_021063) - PTPRK  (NM_001135648) rearrangement : c.226: HIST1H2BD_c.2158-357:PTPRKinv	yes	unknown	102227673	577732	1397828	0	762
P-0019030-T01-IM6	SOMATIC	HIST1H3A	HIST1H3B	6	6	26021830	26032271	Promoter of HIST1H3A(+):1Kb from tx start	Exon 1 of HIST1H3B(-)		GRCh37	DELETION	10	8	Antisense Fusion	PRECISE	3to5	HIST1H3B (NM_003537) rearrangement: c.18:HIST1H3B_chr6:g.26021830del	yes	unknown	10441	3303	3287	0	8
P-0005855-T01-IM5	SOMATIC	HIST1H3B		6	6	26025427	26032186	IGR: 2Kb before HIST1H4B(-)	Exon 1 of HIST1H3B(-)		GRCh37	DUPLICATION			HIST1H3B-intragenic	PRECISE	5to3	HIST1H3B (NM_003537) rearrangement: c.103:HIST1H3B_chr:6g.26025427dup			6759	6212	8545	0	37
P-0031867-T01-IM6	SOMATIC	HIST1H3B		6	6	26032032	27903738	Exon 1 of HIST1H3B(-)	IGR: 21Kb before OR2B6(+)		GRCh37	DELETION			HIST1H3B-intragenic	PRECISE	3to5	HIST1H3B (NM_003537) rearrangement: c.257:HIST1H3B_chr6:g.27903738del			1871706	35258	41613	0	12
P-0017317-T01-IM6	SOMATIC	HIST1H3C	HIST1H3C	6	6	26044924	26045640	Promoter of HIST1H3C(+):714bp from tx start	Exon 1 of HIST1H3C(+)		GRCh37	DELETION	10	27	Deletion within transcript : mid-exon	PRECISE	3to5	HIST1H3C (NM_003531) Rearrangement : c.-715_c.2del	yes	unknown	716	743	1189	0	30
P-0019855-T01-IM6	SOMATIC	HIST1H3C		6	6	26049856	26056163	IGR: 4Kb before HIST1H3C(+)	Exon 1 of HIST1H1C(-)		GRCh37	DUPLICATION			HIST1H3C-intragenic	PRECISE	5to3	HIST1H3C (NM_003531) rearrangement:  c.494_chr6:g.26049856dup			6307	1358	2432	0	53
P-0032336-T01-IM6	SOMATIC	HIST1H3D	HIST1H3E	6	6	26197072	26227720	Exon 2 of HIST1H3D(-)	Promoter of HIST1H3E(+):2Kb from tx start		GRCh37	DELETION			HIST1H3D-HIST1H3E Fusion	PRECISE	3to5	HIST1H3D(NM_003530) - HIST1H3E(NM_003532) Rearrangement: c.407:HIST1H3D_c.*1927:HIST1H3Edel			30648	3206	3057	0	4
P-0012829-T02-IM6	SOMATIC	HIST1H3D		6	6	26197293	27965778	Exon 2 of HIST1H3D(-)	IGR: 41Kb before OR2B6(+)		GRCh37	DUPLICATION			HIST1H3D-intragenic	PRECISE	5to3	HIST1H3D (NM_003530) rearrangement: c.186_chr6:g.27965778dup			1768485	11407	22348	0	11
P-0057162-T01-IM6	SOMATIC	HIST1H3E	HIST1H3E	6	6	26175455	26225628	IGR: 9Kb before HIST1H2BE(+)	Exon 1 of HIST1H3E(+)		GRCh37	DELETION	6	7	HIST1H3E-intragenic	PRECISE	3to5	HIST1H3E (NM_003532) rearrangement: c.246:HIST1H3E_chr6:g.26175455del	yes	unknown	50173	6380	8548	0	7
P-0035786-T01-IM6	SOMATIC	HIST1H3G		6	6	26271442	26309900	Exon 1 of HIST1H3G(-)	IGR: 25Kb before HIST1H4H(-)		GRCh37	DELETION			HIST1H3G-intragenic	PRECISE	3to5	HIST1H3G (NM_003534) rearrangement: c.171:HIST1H3G_chr6:g.26309900del			38458	1398	977	0	39
P-0024695-T01-IM6	SOMATIC	HIST3H3		4	1	49583945	228612839	IGR: 595Kb before CWH43(+)	Exon 1 of HIST3H3(-)		GRCh37	TRANSLOCATION			HIST3H3-intragenic	IMPPRECISE	5to5	HIST3H3 (NM_003493) rearrangement: t(1;4)(q42.13;p11)(chr1:g.228612839::chr4:g.49583945)			0	0	0	0	18
P-0032065-T01-IM6	SOMATIC	HIST3H3		1	1	145082149	228612866	Intron of NBPF20(+):231Kb before exon 54	Exon 1 of HIST3H3(-)		GRCh37	DUPLICATION			HIST3H3-intragenic	IMPPRECISE	5to3	HIST3H3 (NM_003493) rearrangement: c.161:HIST3H3_chr1:g.145082149dup			83530717	292637	377778	0	5
P-0061864-T01-IM7	SOMATIC	HIVEP3	CDC73	1	1	41980466	193094325	Intron of HIVEP3(-):1Kb before exon 8	Exon 2 of CDC73(+)		GRCh37	INVERSION	10	39	Protein Fusion: mid-exon  {HIVEP3:CDC73}	PRECISE	5to5	HIVEP3 (NM_001127714) - CDC73 (NM_024529) rearrangement: c.5471-1045:HIVEP3_c.215:CDC73inv	yes	unknown	151113859	882126	1456066	0	43
P-0056108-T01-IM6	SOMATIC	HLA-DRB1	MET								GRCh37				HLA-DRB1-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: HLA-DRB1-MET fusion. Note: The rearrangement is an in-frame fusion between genes HLA-DRB1 Exon5 (NM_002124) and MET Exon15 (NM_000245).	yes	unknown					
P-0059172-T01-IM7	SOMATIC	HLA-DRB1	MET								GRCh37				HLA-DRB1-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: HLA-DRB1-MET fusion. Note: The rearrangement is an in-frame fusion between genes HLA-DRB1 Exon5 (NM_002124) and MET Exon15 (NM_000245).	yes	unknown					
P-0065465-T01-IM7	SOMATIC	HLA-DRB1	MET								GRCh37				HLA-DRB1-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: HLA-DRB1-MET fusion. Note: The rearrangement is an in-frame fusion between genes HLA-DRB1 Exon4 (NM_002124) and MET Exon15 (NM_000245) and includes the kinase domain of MET.	yes	unknown					
P-0030808-T01-IM6	SOMATIC	HMBOX1	ALK								GRCh37				HMBOX1-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: HMBOX1-ALK fusion. Note: The rearrangement is an in-frame fusion between genes HMBOX1 Exon7 (NM_001135726) and ALK Exon20 (NM_004304).	yes	unknown					
P-0030808-T01-IM6	SOMATIC	HMBOX1		8	2	28904937	29447713	Exon 8 of HMBOX1(+)	Intron of ALK(-):613bp after exon 19		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {HMBOX1:ALK}	PRECISE	3to3	HMBOX1 (NM_001135726) ALK (NM_004304) Rearrangement : t(2,8)(p23.3,p21.1)(chr2:g.29447713::chr8:g.28904937)			0	0	0	0	115
P-0033072-T01-IM6	SOMATIC	HMGA2	KMT2D	12	12	49437841	66252176	Intron of KMT2D(-):60bp before exon 22	Intron of HMGA2(+):20Kb after exon 3		GRCh37	INVERSION			Protein Fusion: out of frame  {HMGA2:KMT2D}	PRECISE	3to3	HMGA2 (NM_003483)  - KMT2D (NM_003482) rearrangement: c.249+19827:HMGA2_c.5189-60:KMT2Dinv			16814335	200903	250885	0	6
P-0054785-T01-IM6	SOMATIC	HNF1A	HNF1A	12	12	120825607	121434480	IGR: 46Kb before MSI1(-)	Exon 6 of HNF1A(+)		GRCh37	DELETION	10	15	HNF1A-intragenic	PRECISE	3to5	HNF1A (NM_000545) rearrangement: c.1244:HNF1A_chr12:g.120825607del	yes	unknown	608873	21425	18888	0	15
P-0012674-T01-IM5	SOMATIC	HNF1B	HNF1B	17	17	36060998	36067756	Exon 7 of HNF1B(-)	Intron of HNF1B(-): 3Kb before exon 6		GRCh37	DUPLICATION	11	12	Duplication within transcript: mid-exon	PRECISE	5to3	HNF1B (NM_000458) rearrangement: c.1207-2700_c.1524dup	yes	unknown	6758	259	477	0	12
P-0066857-T01-IM7	SOMATIC	HNF1B	BRCA1	17	17	36058480	41244472	Intron of HNF1B(-):601bp after exon 8	Exon 10 of BRCA1(-)		GRCh37	DUPLICATION	10	64	Protein Fusion: mid-exon  {HNF1B:BRCA1}	PRECISE	5to3	HNF1B (NM_000458) - BRCA1 (NM_007294) rearrangement: c.1653+602:HNF1B_c.3076:BRCA1dup	yes	unknown	5185992	440133	537473	0	66
P-0032467-T01-IM6	SOMATIC	HOXB3		17	17	21146664	46804309	Exon 3 of NATD1(-)	Exon 2 of HOXB13(-)		GRCh37	INVERSION			HOXB3-intragenic	IMPPRECISE	3to3	HOXB3(NM_006361) Rearrangement: c.698:HOXB13_chr17:g.21146664inv			25657645	475165	686028	0	9
P-0037022-T01-IM6	SOMATIC	HRAS		11	9	533931	124685061	Exon 3 of HRAS(-)	Intron of TTLL11(-):51Kb after exon 6		GRCh37	TRANSLOCATION			HRAS-intragenic	PRECISE	3to3	HRAS (NM_001130442) rearrangement: t(9;11)(q33.2;p15.5)(chr9:g.124685061::chr11:g.533931)			0	0	0	0	6
P-0029726-T01-IM6	SOMATIC	HSF2BP	ERG								GRCh37				HSF2BP-ERG Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: HSF2BP-ERG fusion. Note: The rearrangement is an in-frame fusion between genes HSF2BP Exon8 (NM_007031) and ERG Exon6 (NM_004449). Note: Functional significance is unknown for HSF2BP-ERG fusion.	yes	unknown					
P-0054356-T01-IM6	SOMATIC	ICOSLG	ACOXL	21	2	45655421	111779463	Exon 4 of ICOSLG(-)	Intron of ACOXL(+):10Kb before exon 15		GRCh37	TRANSLOCATION	0	31	Antisense Fusion	IMPPRECISE	5to3	ICOSLG (NM_015259) rearrangement: t(2;21)(q13;q22.3)(chr2:g.111779463::chr21:g.45655421)	yes	unknown	0	0	0	0	31
P-0063444-T01-IM7	SOMATIC	ICOSLG	ICOSLG	21	21	44235939	45651084	IGR: 27Kb before WDR4(-)	Intron of ICOSLG(-):78bp after exon 5		GRCh37	DELETION	10	19	ICOSLG-intragenic	PRECISE	3to5	ICOSLG (NM_015259) rearrangement: c.862+79:ICOSLG_chr21:g.44235939del	yes	unknown	1415145	25857	34232	0	19
P-0043641-T01-IM6	SOMATIC	ICOSLG	KCNJ6	21	21	38998516	45656843	Intron of KCNJ6(-):730bp before exon 4	Exon 3 of ICOSLG(-)		GRCh37	DELETION	10	9	Protein Fusion: mid-exon  {ICOSLG:KCNJ6}	PRECISE	3to5	ICOSLG (NM_015259) - KCNJ6 (NM_002240) rearrangement: c.313:ICOSLG_c.947-730:KCNJ6del	yes	unknown	6658327	272080	176672	0	15
P-0037132-T01-IM6	SOMATIC	IDH1	IDH1	2	2	209106800	209112356	Exon 7 of IDH1(-)	Intron of IDH1(-):736bp after exon 4		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	IDH1 (NM_005896) rearrangement: c.414+737_c.768del	yes	unknown	5556	4369	3298	0	5
P-0006310-T01-IM5	SOMATIC	IDH1	IDH1	2	2	209108817	209110109	Intron of IDH1(-): 489bp before exon 6	Exon 5 of IDH1(-)		GRCh37	DUPLICATION	28	5	Duplication within transcript: mid-exon	PRECISE	5to3	IDH1 (NM_005896) Rearrangement :  c.454_521-489dup	yes	unknown	1292	1161	1141	0	5
P-0075923-T01-IM7	SOMATIC	IDH1	IDH1	2	2	193558201	209103934	IGR: 56Kb before PCGEM1(+)	Exon 9 of IDH1(-)		GRCh37	INVERSION	10	11	IDH1-intragenic	PRECISE	5to5	IDH1 (NM_005896) rearrangement: c.1015:IDH1_chr2:g.193558201inv	yes	unknown	15545733	97515	154454	0	14
P-0034306-T01-IM6	SOMATIC	IDH2	IDH2	15	15	90630367	90664307	Exon 7 of IDH2(-)	IGR: 37Kb before IDH2(-)		GRCh37	DUPLICATION	10	62	IDH2-intragenic	PRECISE	5to3	IDH2 (NM_002168) rearrangement: c.944:IDH2_chr15:g.90664307dup	yes	unknown	33940	12353	12856	0	68
P-0006138-T01-IM5	SOMATIC	IDH2	CHN1	15	2	90627553	175847561	Exon 11 of IDH2(-)	Intron of CHN1(-): 22Kb after exon 2		GRCh37	TRANSLOCATION	14	5	Protein fusion: mid-exon (CHN1-IDH2)	PRECISE	3to5	CHN1(NM_001822) - IDH2 (NM_002168) rearrangement: t(2;15)(q31.1;q26)(chr2:g.175847561::chr15:g.90627553)	yes	unknown	0	0	0	0	5
P-0006458-T01-IM5	SOMATIC	IDH2	SEMA4B	15	15	90631503	90757389	Intron of IDH2(-): 88bp after exon 5	Intron of SEMA4B(+): 3Kb before exon 3		GRCh37	INVERSION	22	14	Protein fusion: out of frame (IDH2-SEMA4B)	PRECISE	5to5	IDH2 (NM_002168) - SEMA4B (NM_198925) fusion: c.678+88:IDH2_c.158-3282:SEMA4Binv	yes	unknown	125886	8022	14516	0	14
P-0040225-T01-IM6	SOMATIC	IFNGR1	IFNGR1	6	6	137522002	137523054	Intron of IFNGR1(-):15bp after exon 6	Intron of IFNGR1(-):909bp before exon 6		GRCh37	INVERSION	5	7	Antisense Fusion	PRECISE	5to5	IFNGR1 (NM_000416) rearrangement: c.734-909_c.861+16inv	yes	unknown	1052	386	797	0	7
P-0008838-T01-IM5	SOMATIC	IFNGR1		6	6	137519327	137953996	Exon 7 of IFNGR1(-)	IGR: 141Kb before OLIG3(-)		GRCh37	INVERSION			IFNGR1-intragenic	PRECISE	3to3	IFNGR1 (NM_000416) rearrangement : c.1311:IFNGR1_chr6:g.137953996inv			434669	13305	14599	0	5
P-0052133-T01-IM6	SOMATIC	IFNGR1		6	6	137522084	139333408	Exon 6 of IFNGR1(-)	IGR: 16Kb before ABRACL(+)		GRCh37	INVERSION			IFNGR1-intragenic	PRECISE	5to5	IFNGR1 (NM_000416) rearrangement: c.795:IFNGR1_chr6:g.139333408inv			1811324	37287	14311	0	3
P-0059710-T01-IM7	SOMATIC	IFNGR1		6	6	137521103	137530707	Intron of IFNGR1(-):914bp after exon 6	Intron of IFNGR1(-):2Kb before exon 2		GRCh37	INVERSION			IFNGR1-intragenic	PRECISE	3to3	IFNGR1 (NM_000416) rearrangement: c.86-2493_c.861+915inv			9604	5529	4590	0	8
P-0062417-T01-IM7	SOMATIC	IGF1	IGF1	12	12	102796343	102813286	Exon 4 of IGF1(-)	Exon 3 of IGF1(-)		GRCh37	DELETION	10	20	Deletion within transcript : mid-exon	PRECISE	3to5	IGF1 (NM_001111285) rearrangement: c.402+1:IGF1_chr12:g.102796343del	yes	unknown	16943	3788	4657	0	20
P-0030228-T01-IM6	SOMATIC	IGF1	GLT8D2	12	12	102813382	104403972	Exon 3 of IGF1(-)	Intron of GLT8D2(-):5Kb after exon 4		GRCh37	DUPLICATION	10	2	Protein Fusion: mid-exon  {IGF1:GLT8D2}	PRECISE	5to3	IGF1 (NM_001111285) - GLT8D2 (NM_031302) rearrangement: c.307:IGF1_c.112+4819:GLT8D2dup	yes	unknown	1590590	3912	5660	0	2
P-0052291-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99312545	99465630	Intron of IGF1R(+):61Kb after exon 2	Exon 11 of IGF1R(+)		GRCh37	DELETION	10	17	Deletion within transcript : mid-exon	PRECISE	3to5	IGF1R (NM_000875) rearrangement: c.640+61209_c.2455del	yes	unknown	153085	15842	8029	0	18
P-0033766-T01-IM6	SOMATIC	IGF1R		15	15	99323114	99460035	Intron of IGF1R(+):72Kb after exon 2	Exon 10 of IGF1R(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	IGF1R (NM_000875) rearrangement: c.640+71778_c.2131del			136921	10698	9851	0	22
P-0003779-T01-IM5	SOMATIC	IGF1R	IGF1R	15	15	99438142	99440041	Intron of IGF1R(+): 2Kb before exon 4	Exon 4 of IGF1R(+)		GRCh37	DELETION	98	39	Deletion within transcript: mid-exon	PRECISE	3to5	IGF1R (NM_000875) rearrangement: c.954-1844_1009del	yes	unknown	1899	720	3432	1	88
P-0060531-T01-IM7	SOMATIC	IGF1R		15	15	99456192	99457849	Intron of IGF1R(+):80bp before exon 8	Intron of IGF1R(+):1Kb after exon 8		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.1590-81_c.1828+1338dup			1657	2086	3537	0	5
P-0047996-T02-IM6	SOMATIC	IGF1R	IGF1R	15	15	99377137	99454706	Intron of IGF1R(+):57Kb before exon 3	Intron of IGF1R(+):36bp after exon 7		GRCh37	DUPLICATION	0	7	Duplication of 5 exons : out of frame	IMPPRECISE	5to3	IGF1R (NM_000875) rearrangement: c.641-57417_c.1589+36dup	yes	unknown	77569	8855	11432	0	8
P-0048011-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99451943	99468294	Exon 6 of IGF1R(+)	Intron of IGF1R(+):381bp after exon 13		GRCh37	DUPLICATION	10	59	Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.1277_c.2782+381dup	yes	unknown	16351	10684	29985	0	59
P-0053524-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99324381	99460027	Intron of IGF1R(+):73Kb after exon 2	Exon 10 of IGF1R(+)		GRCh37	DUPLICATION	10	56	Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.640+73045_c.2123dup	yes	unknown	135646	15424	25655	0	59
P-0056928-T02-IM7	SOMATIC	IGF1R	IGF1R	15	15	99231176	99250942	Intron of IGF1R(+):20Kb before exon 2	Exon 2 of IGF1R(+)		GRCh37	DUPLICATION	10	34	Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.95-19615_c.246dup	yes	unknown	19766	1479	1990	0	36
P-0042111-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99424870	99434804	Intron of IGF1R(+):10Kb before exon 3	Exon 3 of IGF1R(+)		GRCh37	DUPLICATION	9	6	Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.641-9684_c.891dup	yes	unknown	9934	2480	2378	0	7
P-0069550-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99401024	99500543	Intron of IGF1R(+):34Kb before exon 3	Exon 21 of IGF1R(+)		GRCh37	DUPLICATION	10	67	Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.641-33530_c.3976dup	yes	unknown	99519	21874	68703	0	70
P-0060531-T01-IM7	SOMATIC	IGF1R		15	15	99443112	99456470	Intron of IGF1R(+):262bp after exon 5	Exon 8 of IGF1R(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	IGF1R (NM_000875) rearrangement: c.1247+262_c.1787dup			13358	5664	9656	0	14
P-0005818-T01-IM5	SOMATIC	IGF1R	IGF1R	15	15	99304900	99434721	Intron of IGF1R(+): 54Kb after exon 2	Exon 3 of IGF1R(+)		GRCh37	DUPLICATION	17	10	Duplication within transcript: mid-exon	PRECISE	5to3	IGF1R (NM_000875)  Rearrangement:  c.640+53564_808dup	yes	unknown	129821	1759	2173	0	10
P-0039690-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99164921	99460035	IGR: 24Kb before IRAIN(-)	Exon 10 of IGF1R(+)		GRCh37	DELETION	0	5	IGF1R-intragenic	IMPPRECISE	3to5	IGF1R (NM_000875) rearrangement: c.2131:IGF1R_chr15:g.99164921del	yes	unknown	295114	17729	30675	0	5
P-0054986-T01-IM6	SOMATIC	IGF1R	LOC101928519	15	6	99482488	19286825	Exon 18 of IGF1R(+)	IGR: 218Kb before LOC101928519(-)		GRCh37	TRANSLOCATION	10	46	IGF1R-intragenic	PRECISE	3to5	IGF1R (NM_000875) rearrangement: c.3298-166:IGF1R_chr15:g.66176606inv	yes	unknown	0	0	0	0	48
P-0070501-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99478130	99489555	Exon 16 of IGF1R(+)	Intron of IGF1R(+):2Kb before exon 20		GRCh37	INVERSION	10	12	IGF1R-intragenic	PRECISE	5to5	IGF1R (NM_000875) rearrangement: c.3034_c.3588-2248inv	yes	unknown	11425	5712	6449	0	13
P-0010464-T01-IM5	SOMATIC	IGF1R		15	7	99434762	113198852	Exon 3 of IGF1R(+)	IGR: 318Kb before PPP1R3A(-)		GRCh37	TRANSLOCATION			IGF1R-intragenic	PRECISE	3to5	IGF1R (NM_000875) rearrangement: t(7;15)(q31.1;q25.3)(chr7:g.113198852::chr15:g.99434762)			0	0	0	0	29
P-0031867-T01-IM6	SOMATIC	IGF1R	SCD5	15	4	99473532	83693428	Exon 15 of IGF1R(+)	Intron of SCD5(-):26Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {IGF1R:SCD5}	PRECISE	3to3	IGF1R (NM_000875) - SCD5(NM_001037582) rearrangement: t(4;15)(q21.22;q26.3)(chr4:g.83693428::chr15:g.99473532)			0	0	0	0	11
P-0019412-T01-IM6	SOMATIC	IGF1R	SLC25A26	15	3	99434701	66300171	Exon 3 of IGF1R(+)	Intron of SLC25A26(+):6Kb after exon 2		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {IGF1R:SLC25A26}	PRECISE	3to5	IGF1R (NM_000875) - SLC25A26 (NM_173471) rearrangement: t(3;15)(p14.1;q26.3(chr3:g.66300171::chr15:g.99434701)			0	0	0	0	15
P-0002435-T01-IM3	SOMATIC	IGF1R	ACBD6	15	1	99452116	180399173	Exon 6 of IGF1R(+)	Intron of ACBD6(-): 142bp after exon 4		GRCh37	TRANSLOCATION	22	7	Protein fusion: mid-exon (ACBD6-IGF1R)	PRECISE	5to5		yes	unknown	0	0	0	0	7
P-0058321-T01-IM6	SOMATIC	IGF2	IGF2	11	11	1659608	2156734	IGR: 9Kb before KRTAP5-5(+)	Exon 3 of IGF2(-)		GRCh37	DELETION	10	25	IGF2-intragenic	PRECISE	3to5	IGF2 (NM_001127598) rearrangement: c.188:IGF2_chr11:g.1659608del	yes	unknown	497126	10527	6448	0	27
P-0074329-T02-IM7	SOMATIC	IGF2	IGF2	11	11	2112216	2161525	IGR: 38Kb before IGF2(-)	Exon 2 of IGF2(-)		GRCh37	DUPLICATION	10	57	IGF2-intragenic	PRECISE	5to3	IGF2 (NM_001127598) rearrangement: c.2:IGF2_chr11:g.2112216dup	yes	unknown	49309	6968	10271	0	58
P-0021497-T01-IM6	SOMATIC	IGF2		11	11	2161466	2283381	Exon 2 of IGF2(-)	IGR: 6Kb before ASCL2(-)		GRCh37	INVERSION			IGF2-intragenic	PRECISE	3to3	IGF2 (NM_001127598) rearrangement: c.61:IGF2_chr11:g.2283381inv			121915	1872	2509	0	14
P-0086046-T01-IM7	SOMATIC	IGF2		11	8	2161479	128732297	Exon 2 of IGF2(-)	3-UTR of CASC11(-):14Kb after coding stop		GRCh37	TRANSLOCATION			IGF2-intragenic	PRECISE	3to3	IGF2 (NM_001127598) rearrangement: t(8;11)(q24.21;p15.5)(chr8:g.128732297::chr11:g.2161479)			0	0	0	0	67
P-0049789-T01-IM6	SOMATIC	IGHMBP2	FGFR1	11	8	68697608	38275857	Intron of IGHMBP2(+):783bp after exon 8	Exon 11 of FGFR1(-)		GRCh37	TRANSLOCATION	10	148	Protein Fusion: mid-exon  {IGHMBP2:FGFR1}	PRECISE	3to3	IGHMBP2 (NM_002180) - FGFR1 (NM_001174067) fusion: t(8;11)(p11.23;q13.3)(chr8:g.38275857::chr11:g.68697608)	yes	unknown	0	0	0	0	152
P-0017046-T01-IM6	SOMATIC	IGSF21	PIK3R3	1	1	18643832	46543287	Intron of IGSF21(+):18Kb before exon 4	Intron of PIK3R3(-):2bp before exon 3		GRCh37	INVERSION			IGSF21-PIK3R3 Fusion	PRECISE	3to3	IGSF21 (NM_032880) - PIK3R3 (NM_003629) rearrangement: c.306-17554:IGSF21_c.216-2:PIK3R3inv			27899455	0	53		
P-0033508-T01-IM6	SOMATIC	IGSF3	NOTCH2	1	1	117198164	120529602	Intron of IGSF3(-):11Kb after exon 1	Exon 5 of NOTCH2(-)		GRCh37	DELETION	10	59	Protein Fusion: mid-exon  {NOTCH2:IGSF3}	PRECISE	3to5	NOTCH2 (NM_024408) - IGSF3 (NM_001542) rearrangement: c.855:NOTCH2_c.43+10742:IGSF3del	yes	unknown	3331438	70433	80185	0	66
P-0004912-T01-IM5	SOMATIC	IGSF8	SDHC	1	1	160066615	161298176	Intron of IGSF8(-): 2Kb before exon 2	Intron of SDHC(+): 10bp before exon 3		GRCh37	INVERSION			Protein fusion: out of frame (IGSF8-SDHC)	PRECISE	5to5	IGSF8(NM_001206665) - SDHC(NM_003001) Rearrangement :  c.65-1579:IGSF8_c.78-10:SDHCinv			1231561	3686	5807	0	20
P-0024266-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206653952	206659574	Intron of IKBKE(+):76bp after exon 13	Intron of IKBKE(+):931bp after exon 15		GRCh37	DELETION	10	24	Deletion of 2 exons : in frame	PRECISE	3to5	IKBKE (NM_014002) Rearrangement : c.1427+76_c.1616+931del	yes	unknown	5622	2891	2106	0	27
P-0014509-T01-IM6	SOMATIC	IKBKE		1	1	206651668	206657642	Exon 9 of IKBKE(+)	Intron of IKBKE(+): 692bp before exon 14		GRCh37	DUPLICATION			Duplication within transcript: mid-exon	PRECISE	5to3	IKBKE (NM_014002) rearrangement: c.978_c.1428-692dup			5974	6970	8309	0	10
P-0056185-T01-IM6	SOMATIC	IKBKE	IKBKE	12	1	98574161	206667151	IGR: 185Kb before MIR4303(-)	Intron of IKBKE(+):101bp before exon 21		GRCh37	TRANSLOCATION	10	62	IKBKE-intragenic	PRECISE	3to5	IKBKE (NM_014002) rearrangement: t(1;12)(q32.1;q23.1)(chr1:g.206667151::chr12:g.98574161)	yes	unknown	0	0	0	0	62
P-0061420-T01-IM7	SOMATIC	IKBKE	IKBKE	1	1	74658969	206649854	5-UTR of LRRIQ3(-):166Kb before coding start	Intron of IKBKE(+):149bp after exon 6		GRCh37	DELETION	10	8	IKBKE-intragenic	PRECISE	3to5	IKBKE (NM_014002) rearrangement: c.540+149:IKBKE_chr1:g.74658969del	yes	unknown	131990885	737958	618948	0	9
P-0066980-T01-IM7	SOMATIC	IKBKE	IKBKE	1	1	160864198	206652538	IGR: 18Kb before ITLN1(-)	Intron of IKBKE(+):62bp after exon 10		GRCh37	INVERSION	10	3	IKBKE-intragenic	PRECISE	3to3	IKBKE (NM_014002) rearrangement: c.1183+62:IKBKE_chr1:g.160864198inv	yes	unknown	45788340	353864	679329	0	10
P-0075205-T01-IM7	SOMATIC	IKBKE	IKBKE	1	1	203030503	206664232	Intron of PPFIA4(+):276bp before exon 11	Intron of IKBKE(+):41bp after exon 17		GRCh37	INVERSION	8	7	IKBKE-intragenic	PRECISE	5to5	IKBKE (NM_014002) rearrangement: c.1733+41:IKBKE_chr1:g.203030503inv	yes	unknown	3633729	44625	62779	0	7
P-0058226-T01-IM6	SOMATIC	IKBKE	THBS3	1	1	155166925	206648064	Exon 20 of THBS3(-)	Intron of IKBKE(+):143bp before exon 5		GRCh37	INVERSION	10	3	Protein Fusion: mid-exon  {IKBKE:THBS3}	PRECISE	3to3	IKBKE (NM_014002) - THBS3 (NM_007112) rearrangement: c.229-144:IKBKE_c.2579:THBS3inv	yes	unknown	51481139	218803	399945	0	3
P-0060675-T01-IM7	SOMATIC	IKZF1	IKZF1	7	7	50352898	50358715	5-UTR of IKZF1(+):6Kb before coding start	Intron of IKZF1(+):18bp after exon 2		GRCh37	INVERSION	10	6	Antisense Fusion	PRECISE	3to3	IKZF1 (NM_006060) rearrangement: c.-14-5746_c.40+18inv	yes	unknown	5817	521	233	0	6
P-0076939-T01-IM7	SOMATIC	IKZF1	IKZF1	7	7	50451412	50455095	Intron of IKZF1(+):1Kb after exon 5	Exon 6 of IKZF1(+)		GRCh37	DELETION	5	6	Deletion within transcript : mid-exon	PRECISE	3to5	IKZF1 (NM_006060) rearrangement: c.593+1007_c.646del	yes	unknown	3683	485	777	0	6
P-0048437-T01-IM6	SOMATIC	IKZF1	IKZF1	7	7	25970278	50468073	IGR: 19Kb before MIR148A(-)	Exon 8 of IKZF1(+)		GRCh37	INVERSION	0	9	IKZF1-intragenic	IMPPRECISE	3to3	IKZF1 (NM_006060) Rearrangement: c.1312:IKZF1_chr7:g.25970278inv	yes	unknown	24497795	34075	34495	0	9
P-0034391-T01-IM6	SOMATIC	IKZF1		7	7	50358698	55967697	Intron of IKZF1(+):1bp after exon 2	IGR: 13Kb before ZNF713(+)		GRCh37	INVERSION			IKZF1-intragenic	PRECISE	3to3	IKZF1 (NM_006060) rearrangement: c.40+1:IKZF1_chr7:g.55967697inv			5608999	87995	235534	0	21
P-0086855-T01-IM7	SOMATIC	IKZF1		12	7	18167897	50367055	IGR: 66Kb before RERGL(-)	Intron of IKZF1(+):178bp before exon 3		GRCh37	TRANSLOCATION			IKZF1-intragenic	PRECISE	5to5	IKZF1 (NM_006060) rearrangement: t(7;12)(p12.2;p12.3)(g.50367055::g.18167897)			0	0	0	0	15
P-0076140-T01-IM7	SOMATIC	IKZF3	CDK12	17	17	37687554	37963759	Exon 14 of CDK12(+)	Intron of IKZF3(-):15Kb before exon 4		GRCh37	INVERSION	8	2	Protein Fusion: mid-exon  {IKZF3:CDK12}	PRECISE	5to5	IKZF3 (NM_012481) - CDK12 (NM_016507) rearrangement: c.164-14573:IKZF3_c.4458:CDK12inv	yes	unknown	276205	47995	204891	0	2
P-0017846-T01-IM6	SOMATIC	IL10		1	1	201374280	206944213	3-UTR of TNNI1(-):5Kb after coding stop	Intron of IL10(-):38bp after exon 3		GRCh37	DELETION			IL10-intragenic	PRECISE	3to5	IL10 (NM_000572) Rearrangement : chr1:g.201374280_c.378+39:IL10del			5569933	37072	87278	0	6
P-0052707-T01-IM6	SOMATIC	IL7R	IL7R	5	5	28547960	35876376	IGR: 379Kb before LSP1P3(+)	Exon 8 of IL7R(+)		GRCh37	INVERSION	10	11	IL7R-intragenic	PRECISE	5to5	IL7R (NM_002185) rearrangement: c.1168:IL7R_chr5:g.28547960inv	yes	unknown	7328416	68103	99762	0	13
P-0036978-T01-IM6	SOMATIC	IL7R		8	5	95931214	35867429	IGR: 7Kb before TP53INP1(-)	Exon 3 of IL7R(+)		GRCh37	TRANSLOCATION			IL7R-intragenic	IMPPRECISE	5to3	IL7R (NM_002185) rearrangement: t(5;8)(p13.2;q22.1)(chr5:g.35867429::chr8:g.95931214)			0	0	0	0	8
P-0082362-T01-IM7	SOMATIC	IL7R		5	5	1458842	35871189	Promoter of LPCAT1(-):3Kb from tx start	Exon 4 of IL7R(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {IL7R:LPCAT1}	PRECISE	3to3	IL7R (NM_002185) rearrangement: c.411:IL7R_chr5:g.1458842inv			34412347	142468	208476	0	5
P-0029583-T01-IM6	SOMATIC	INHBA	LANCL2	7	7	41729351	55480357	Exon 3 of INHBA(-)	Intron of LANCL2(+):575bp after exon 6		GRCh37	DUPLICATION	9	5	Antisense Fusion	PRECISE	5to3	INHBA (NM_002192) rearrangement: c.1178:INHBA_chr7:g.55480357dup	yes	unknown	13751006	97637	161860	0	5
P-0067918-T01-IM7	SOMATIC	INPP4A	INPP4A	2	2	99172172	99188966	Exon 17 of INPP4A(+)	Intron of INPP4A(+):311bp before exon 24		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	INPP4A (NM_001134224) rearrangement: c.1738_c.2534-312del	yes	unknown	16794	9010	14707	0	4
P-0052095-T01-IM6	SOMATIC	INPP4A		14	2	82874527	99171842	IGR: 803Kb before LINC01467(-)	Intron of INPP4A(+):173bp before exon 17		GRCh37	TRANSLOCATION			INPP4A-intragenic	PRECISE	3to5	INPP4A (NM_001134224) rearrangement: t(2;14)(q11.2;q31.1)(chr2:g.99171842::chr14:g.82874527)			0	0	0	0	10
P-0019584-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143044639	143050132	Intron of INPP4B(-):71bp before exon 20	Intron of INPP4B(-):4Kb before exon 19		GRCh37	DELETION	10	41	Deletion of 1 exon : out of frame	PRECISE	3to5	INPP4B (NM_001101669) rearrangement: c.1721-4219_c.1894-71del	yes	unknown	5493	1621	1234	0	43
P-0028642-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143002056	143033722	Intron of INPP4B(-):1Kb after exon 25	Exon 22 of INPP4B(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	INPP4B (NM_001101669) rearrangement: c.2249_c.2642+1128del	yes	unknown	31666	2945	4547	0	24
P-0014544-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143084505	143114339	Intron of INPP4B(-): 3Kb before exon 18	Exon 16 of INPP4B(-)		GRCh37	DELETION	23	18	Deletion within transcript: mid-exon	PRECISE	3to5	INPP4B (NM_001101669) Rearrangement : c.1082_c.1360-2791del	yes	unknown	29834	3652	2065	0	18
P-0039276-T01-IM6	SOMATIC	INPP4B	INPP4B	12	4	50117803	143326279	IGR: 17Kb before TMBIM6(+)	Intron of INPP4B(-):79bp after exon 6		GRCh37	TRANSLOCATION	0	33	INPP4B-intragenic	IMPPRECISE	5to5	INPP4B (NM_001101669) rearrangement: t(4;12)(q31.21;q13.12)(chr4:g.143326279::chr12:g.50117803)	yes	unknown	0	0	0	0	11
P-0009791-T01-IM5	SOMATIC	INPP4B	INPP4B	4	4	133235766	143130135	IGR: 835Kb before PCDH10(+)	Exon 14 of INPP4B(-)		GRCh37	INVERSION	59	18	INPP4B-intragenic	PRECISE	5to5	INPP4B (NM_001101669)  Rearrangement: chr4:g.133235766_ c.881:INPP4Binv	yes	unknown	9894369	33763	30101	0	19
P-0072690-T03-IM7	SOMATIC	INPP4B	LINC02433	4	4	143033707	158488101	Exon 22 of INPP4B(-)	IGR: 6Kb before LOC340017(+)		GRCh37	DELETION	4	5	INPP4B-intragenic	PRECISE	3to5	INPP4B (NM_001101669) rearrangement: c.2264:INPP4B_chr4:g.158488101del	yes	unknown	15454394	67544	77382	0	5
P-0074329-T02-IM7	SOMATIC	INPP4B	INPP4B	4	4	109190629	143045863	IGR: 97Kb before LEF1-AS1(+)	Exon 19 of INPP4B(-)		GRCh37	INVERSION	10	47	INPP4B-intragenic	PRECISE	5to5	INPP4B (NM_001101669) rearrangement: c.1771:INPP4B_chr4:g.109190629inv	yes	unknown	33855234	89021	92881	0	54
P-0078997-T01-IM7	SOMATIC	INPP4B	INPP4B	4	4	128067380	143033763	IGR: 487Kb before INTU(+)	Exon 22 of INPP4B(-)		GRCh37	INVERSION	10	9	INPP4B-intragenic	PRECISE	3to3	INPP4B (NM_001101669) rearrangement: c.2208:INPP4B_chr4:g.128067380inv	yes	unknown	14966383	43085	63424	0	9
P-0049438-T01-IM6	SOMATIC	INPPL1	PHOX2A	11	11	71948973	71956569	Intron of INPPL1(+):112bp before exon 27	Promoter of PHOX2A(-):6Kb from tx start		GRCh37	DELETION	8	4	Antisense Fusion	PRECISE	3to5	INPPL1 (NM_001567) rearrangement: c.3553-113:INPPL1_chr11:g.71956569del	yes	unknown	7596	4248	1505	0	4
P-0032233-T01-IM6	SOMATIC	INPPL1		11	11	2934580	71944115	Intron of SLC22A18(+):3Kb before exon 6	Intron of INPPL1(+):3bp before exon 17		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	INPPL1 (NM_001567) rearrangement: c.1952-4:INPPL1_chr11:g.2934580inv			69009535	195752	278153	0	17
P-0073412-T01-IM7	SOMATIC	INPPL1		11	11	71947165	72678093	Intron of INPPL1(+):135bp after exon 25	Intron of FCHSD2(-):17Kb after exon 8		GRCh37	DELETION			Antisense Fusion	IMPPRECISE	3to5	INPPL1 (NM_001567) rearrangement: c.2879+135:INPPL1_chr11:g.72678093del			730928	14354	19515	0	11
P-0058231-T02-IM7	SOMATIC	INPPL1	INPPL1	11	11	71937857	71941986	Intron of INPPL1(+):1Kb before exon 2	Intron of INPPL1(+):44bp after exon 11		GRCh37	DELETION	10	27	Deletion of 10 exons : out of frame	PRECISE	3to5	INPPL1 (NM_001567) rearrangement: c.183-1377_c.1300+44del	yes	unknown	4129	14093	18310	0	28
P-0069867-T01-IM7	SOMATIC	INPPL1	INPPL1	11	11	71387319	71939450	IGR: 94Kb before KRTAP5-11(-)	Exon 3 of INPPL1(+)		GRCh37	DELETION	10	2	INPPL1-intragenic	PRECISE	3to5	INPPL1 (NM_001567) rearrangement: c.305:INPPL1_chr11:g.71387319del	yes	unknown	552131	4699	5552	0	10
P-0015973-T01-IM6	SOMATIC	INPPL1		11	3	71944080	197336862	Intron of INPPL1(+):38bp before exon 17	IGR: 4Kb before LOC220729(-)		GRCh37	TRANSLOCATION			INPPL1-intragenic	PRECISE	3to5	INPPL1 (NM_001567) rearrangement: t(3;11)(q29;q13.4)(chr3:g.197336862::chr11:g.71944080)			0	0	0	0	12
P-0023273-T01-IM6	SOMATIC	INPPL1		11	11	64878485	71949197	Intron of VPS51(+):232bp after exon 9	Exon 27 of INPPL1(+)		GRCh37	INVERSION			INPPL1-intragenic	PRECISE	5to5	INPPL1 (NM_001567) rearrangement: chr11:g.64878485_c.3664:INPPL1inv			7070712	153370	308470	0	23
P-0039295-T01-IM6	SOMATIC	INPPL1		11	3	71936263	90035582	Intron of INPPL1(+):53bp after exon 1	IGR: 879Kb before EPHA3(+)		GRCh37	TRANSLOCATION			INPPL1-intragenic	PRECISE	3to5	INPPL1 (NM_001567) rearrangement: t(3;11)(p11.1;q13.4)(chr3:g.90035582::chr11:g.71936263)			0	0	0	0	39
P-0024858-T01-IM6	SOMATIC	INPPL1	NLRP6	11	11	282734	71940232	Exon 5 of NLRP6(+)	Exon 5 of INPPL1(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {INPPL1:NLRP6}	PRECISE	5to3	INPPL1 (NM_001567) - NLRP6 (NM_138329) rearrangement: c.617:INPPL1_c.2138:NLRP6dup			71657498	202253	322217	0	20
P-0069134-T01-IM7	SOMATIC	INPPL1	SHANK2	11	11	70580453	71943340	Intron of SHANK2(-):36Kb before exon 12	Exon 14 of INPPL1(+)		GRCh37	INVERSION	10	48	Protein Fusion: mid-exon  {INPPL1:SHANK2}	PRECISE	3to3	INPPL1 (NM_001567) - SHANK2 (NM_012309) rearrangement: c.1672:INPPL1_c.1632-35585:SHANK2inv	yes	unknown	1362887	26066	39364	0	50
P-0069997-T01-IM7	SOMATIC	INPPL1	KHDRBS2	11	6	71945779	62605937	Intron of INPPL1(+):120bp after exon 21	Intron of KHDRBS2(-):1Kb before exon 6		GRCh37	TRANSLOCATION	0	6	Protein Fusion: out of frame  {INPPL1:KHDRBS2}	IMPPRECISE	3to3	INPPL1 (NM_001567) - KHDRBS2 (NM_152688) rearrangement: t(6;11)(q11.1;q13.4)(chr6:g.62605937::chr11:g.71945779)	yes	unknown	0	0	0	0	6
P-0072267-T01-IM7	SOMATIC	INSR	PCP2	19	19	7119295	7697268	Intron of INSR(-):164bp after exon 21	Intron of PCP2(-):10bp after exon 3		GRCh37	INVERSION	10	16	Antisense Fusion	PRECISE	5to5	INSR (NM_000208) rearrangement: c.3794+165:INSR_chr19:g.7697268inv	yes	unknown	577973	48386	59807	0	16
P-0030289-T01-IM6	SOMATIC	INSR	INSR	19	19	7122676	7131629	Exon 19 of INSR(-)	Intron of INSR(-):539bp after exon 14		GRCh37	DELETION	10	60	Deletion within transcript : mid-exon	PRECISE	3to5	INSR (NM_000208) Rearrangement: c.3478_c.2842+540del	yes	unknown	8953	6660	10064	0	65
P-0039706-T01-IM6	SOMATIC	INSR		19	19	7267365	7275266	Exon 2 of INSR(-)	Intron of INSR(-):7Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	INSR (NM_000208) rearrangement: c.101-7359_c.643del			7901	3848	1955	0	18
P-0078241-T01-IM7	SOMATIC	INSR	INSR	19	19	7166069	7169549	Intron of INSR(-):95bp after exon 8	Intron of INSR(-):998bp after exon 6		GRCh37	DUPLICATION	10	38	Duplication of 2 exons : in frame	PRECISE	5to3	INSR (NM_000208) rearrangement: c.1483+999_c.1861+96dup	yes	unknown	3480	2644	6937	0	42
P-0068097-T01-IM7	SOMATIC	INSR	INSR	19	19	7142932	7149955	Exon 12 of INSR(-)	Intron of INSR(-):552bp after exon 11		GRCh37	DUPLICATION	10	6	Duplication within transcript : mid-exon	PRECISE	5to3	INSR (NM_000208) rearrangement: c.2267+553_c.2437dup	yes	unknown	7023	1208	1392	0	7
P-0052861-T02-IM6	SOMATIC	INSR	INSR	19	19	7119580	7200847	Exon 21 of INSR(-)	Intron of INSR(-):16Kb before exon 3		GRCh37	INVERSION	10	32	INSR-intragenic	PRECISE	3to3	INSR (NM_000208) rearrangement: c.653-16199_c.3674inv	yes	unknown	81267	47978	33636	0	32
P-0063289-T01-IM7	SOMATIC	INSR	SNAR-A12	19	19	7267833	48394400	Exon 2 of INSR(-)	IGR: 17Kb before SNAR-A12(+)		GRCh37	DELETION	10	18	INSR-intragenic	PRECISE	3to5	INSR (NM_000208) rearrangement: c.175:INSR_chr19:g.48394400del	yes	unknown	41126567	887821	1049886	0	18
P-0014072-T01-IM5	SOMATIC	INSR		20	19	12589947	7141571	IGR: 400Kb before SPTLC3(+)	Intron of INSR(-): 117bp after exon 13		GRCh37	TRANSLOCATION			INSR-intragenic	PRECISE	5to5	INSR (NM_000208) rearrangement: t(19;20)(p13.2;p12.1)(chr19:g.7141571::chr20:g.12589947)			0	0	0	0	17
P-0016973-T01-IM6	SOMATIC	INSR		19	18	7117210	18934293	Exon 22 of INSR(-)	5-UTR of GREB1L(+):29Kb before coding start		GRCh37	TRANSLOCATION			INSR-intragenic	PRECISE	3to5	INSR (NM_000208)rearrangement: t(18;19)(q11.1;p13.2)(chr18:g.18934293::chr19:g.7117210)			0	0	0	0	22
P-0019776-T01-IM6	SOMATIC	INSR		19	19	7100343	7168124	IGR: 12Kb before INSR(-)	Intron of INSR(-):19bp before exon 7		GRCh37	DUPLICATION			INSR-intragenic	PRECISE	5to3	INSR (NM_000208) rearrangement: c.1484-19_chr19:g.7100343dup			67781	31098	38041	0	7
P-0020111-T01-IM6	SOMATIC	INSR		21	19	40105340	7126683	IGR: 6Kb before LINC00114(-)	Intron of INSR(-):21bp before exon 16		GRCh37	TRANSLOCATION			INSR-intragenic	PRECISE	3to3	INSR (NM_000208) Rearrangement : t(19,21)(p13.2,q22.2)(chr19:g.7126683::chr21:g.:40105340)			0	0	0	0	38
P-0029291-T01-IM6	SOMATIC	INSR		19	8	7125617	100814425	Intron of INSR(-):79bp before exon 17	Intron of VPS13B(+):7Kb before exon 44		GRCh37	TRANSLOCATION			INSR-intragenic	PRECISE	3to5	INSR (NM_000208) rearrangement: t(8;19)(q22.2;p13.2)(chr8:g.100814425::chr19:g.7125617)			0	0	0	0	7
P-0067779-T02-IM7	SOMATIC	INSR	MCOLN1	19	19	7122824	7596978	Intron of INSR(-):40bp before exon 19	Intron of MCOLN1(+):1Kb before exon 13		GRCh37	INVERSION			Protein Fusion: in frame  {INSR:MCOLN1}	PRECISE	5to5	INSR (NM_000208) - MCOLN1 (NM_020533) rearrangement: c.3370-40:INSR_c.1576-1431:MCOLN1inv			474154	34524	20420	0	22
P-0068811-T02-IM7	SOMATIC	INSR	CHLSN	19	7	7267414	1153530	Exon 2 of INSR(-)	Intron of C7orf50(-):13Kb after exon 2		GRCh37	TRANSLOCATION	10	28	Protein Fusion: mid-exon  {INSR:CHLSN}	PRECISE	5to3	INSR (NM_000208) - C7orf50 (NM_001134396) rearrangement: t(7;19)(p22.3;p13.2)(chr7:g.1153530::chr19:g.7267414)	yes	unknown	0	0	0	0	28
P-0069688-T01-IM7	SOMATIC	INSR	LPPR2	19	19	7180889	11469063	Intron of INSR(-):3Kb after exon 3	Intron of LPPR2(+):648bp after exon 3		GRCh37	INVERSION	8	8	Protein Fusion: out of frame  {INSR:LPPR2}	PRECISE	5to5	INSR (NM_000208) - LPPR2 (NM_001170635) rearrangement: c.974+3438:INSR_c.66+648:LPPR2inv	yes	unknown	4288174	191924	347880	0	8
P-0008488-T02-IM5	SOMATIC	IP6K1	MST1R	3	3	49803676	49934996	5-UTR of IP6K1(-): 18Kb before coding start	Exon 6 of MST1R(-)		GRCh37	DUPLICATION	19	18	Protein fusion: mid-exon (IP6K1-MST1R)	PRECISE	5to3	IP6K1 (NM_153273) - MST1R (NM_002447) rearrangement: c.-128-18075:IP6K1_c.2003:MST1Rdup	yes	unknown	131320	57700	50942	0	18
P-0072779-T01-IM7	SOMATIC	IQSEC1	EWSR1	22	3	29686043	13031682	Intron of EWSR1(+):1Kb after exon 9	Intron of IQSEC1(-):48Kb before exon 2		GRCh37	TRANSLOCATION	10	14	Protein Fusion: in frame  {IQSEC1:EWSR1}	PRECISE	5to5	IQSEC1 (NM_001134382) - EWSR1 (NM_013986) rearrangement: t(3;22)(p25.2;q12.2)(chr3:g.13031682::chr22:g.29686043)	yes	unknown	0	0	0	0	16
P-0065979-T01-IM7	SOMATIC	IRF2BP2	RUNX1	21	1	36259555	234743904	Intron of RUNX1(-):162bp before exon 4	Intron of IRF2BP2(-):288bp after exon 1		GRCh37	TRANSLOCATION	0	37	Protein Fusion: in frame  {IRF2BP2:RUNX1}	IMPPRECISE	3to5	IRF2BP2 (NM_001077397) - RUNX1 (NM_001754) rearrangement: t(1;21)(q42.3;q22.12)(chr1:g.234743904::chr21:g.36259555)	yes	unknown	0	0	0	0	36
P-0025757-T01-IM6	SOMATIC	IRF4	DNAH8	6	6	401751	38953872	Exon 7 of IRF4(+)	Intron of DNAH8(+):2Kb after exon 87		GRCh37	DUPLICATION	10	10	Protein Fusion: mid-exon  {DNAH8:IRF4}	PRECISE	5to3	DNAH8 (NM_001206927) - IRF4 (NM_002460) Rearrangement : c.13053+1789:DNAH8_c.1073:IRF4dup	yes	unknown	38552121	328618	427302	0	11
P-0075464-T02-IM7	SOMATIC	IRS1	IRS1	2	2	107503012	227661822	5-UTR of ST6GAL2(-):73Kb before coding start	Exon 1 of IRS1(-)		GRCh37	INVERSION	10	26	Antisense Fusion	PRECISE	5to5	IRS1 (NM_005544) rearrangement: c.1633:IRS1_chr2:g.107503012inv	yes	unknown	120158810	530476	905275	0	27
P-0005868-T02-IM5	SOMATIC	IRS1	IRS1	9	2	24948307	227663341	IGR: 728Kb before TUSC1(-)	Exon 1 of IRS1(-)		GRCh37	TRANSLOCATION	10	6	IRS1-intragenic	PRECISE	5to5	IRS1 (NM_005544) rearrangement : t(2;9)(2q36.3;9p21.3)(chr2:g.227663341::chr9:24948307)	yes	unknown	0	0	0	0	6
P-0074955-T01-IM7	SOMATIC	IRS2	IRS2	13	13	110433499	110435054	Intron of IRS2(-):889bp after exon 1	Exon 1 of IRS2(-)		GRCh37	INVERSION	10	9	Antisense Fusion	PRECISE	5to5	IRS2 (NM_003749) rearrangement: c.3347_c.4012+890inv	yes	unknown	1555	2126	1243	0	10
P-0001325-T01-IM3	SOMATIC	IRS2	IRS2	13	13	110408673	110411128	Intron of IRS2(-): 18bp before exon 2	Intron of IRS2(-): 2Kb before exon 2		GRCh37	DELETION	43	21	Deletion within intron	PRECISE	3to5	None	yes	unknown	2455	168	112	0	25
P-0080999-T01-IM7	SOMATIC	IRS2		13	13	110434833	110436019	Exon 1 of IRS2(-)	Exon 1 of IRS2(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	IRS2 (NM_003749) rearrangement: c.2382_c.3568del			1186	7404	4837	0	65
P-0003556-T01-IM5	SOMATIC	IRS2	IRS2	13	13	110435056	110534798	Exon 1 of IRS2(-)	IGR: 129Kb before IRS2(-)		GRCh37	DUPLICATION	24	11	IRS2-intragenic	PRECISE	5to3	None	yes	unknown	99742	7142	8398	0	12
P-0061229-T01-IM7	SOMATIC	IRS2	LOC100422212	13	1	110435012	163460888	Exon 1 of IRS2(-)	IGR: 70Kb before LOC100422212(-)		GRCh37	TRANSLOCATION	10	167	IRS2-intragenic	PRECISE	5to3	IRS2 (NM_003749) rearrangement: t(1;13)(q23.3;q34)(chr1:g.163460888::chr13:g.110435012)	yes	unknown	0	0	0	0	179
P-0015099-T01-IM6	SOMATIC	IRS2		13	13	99829420	110435791	IGR: 23Kb before UBAC2(+)	Exon 1 of IRS2(-)		GRCh37	DELETION			IRS2-intragenic	PRECISE	3to5	IRS2 (NM_003749) rearrangement: g.99829420_c.2610del			10606371	74547	121091	0	117
P-0015321-T01-IM6	SOMATIC	IRS2		13	13	30177124	110414431	IGR: 7Kb after SLC7A1(-)	Intron of IRS2(-): 6Kb before exon 2		GRCh37	INVERSION			IRS2-intragenic	PRECISE	5to5	IRS2 (NM_003749) rearrangement: chr13:g.30177124_c.4013-5776inv			80237307	259301	307581	0	9
P-0045466-T01-IM6	SOMATIC	IRS2		13	13	110408651	113369567	Exon 2 of IRS2(-)	Intron of ATP11A(+):25Kb after exon 1		GRCh37	DELETION			IRS2-intragenic	PRECISE	3to5	IRS2 (NM_003749) rearrangement: c.4017:IRS2_chr13:g.113369567del			2960916	36731	23380	0	15
P-0024249-T01-IM6	SOMATIC	IRS2	CHMP1A	16	13	89721445	110437384	Intron of CHMP1A(-):1Kb before exon 2	Exon 1 of IRS2(-)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {IRS2:CHMP1A}	IMPPRECISE	3to5	IRS2 (NM_003749) - CHMP1A (NM_002768) rearrangement: t(13;16)(q34;q24.3)(chr13:g.110437384::chr16:g.89721445)			0	0	0	0	10
P-0013345-T01-IM5	SOMATIC	IRS2	OXR1	13	8	110437592	107336496	Exon 1 of IRS2(-)	5-UTR of OXR1(+): 35Kb before coding start		GRCh37	TRANSLOCATION	19	10	Protein fusion: mid-exon (IRS2-OXR1)	PRECISE	5to5	IRS2 (NM_003749) - OXR1 (NM_001198532) Rearrangement : t(8,13)(8q23.1,13q34)(chr8:g.107336496::chr13:g.110437592)	yes	unknown	0	0	0	0	8
P-0026821-T05-IM6	SOMATIC	ITFG1	NOTCH2	16	1	47284570	120464783	Intron of ITFG1(-):8Kb after exon 12	Intron of NOTCH2(-):75bp after exon 28		GRCh37	TRANSLOCATION	10	14	Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) Rearrangement : t(1;16)(p13.1;q12.1)(chr1:g.120464783::chr16:g.47284570)	yes	unknown	0	0	0	0	14
P-0033387-T03-IM7	SOMATIC	ITIH4	BBC3	19	3	47725327	52856705	Intron of BBC3(-):152bp before exon 4	Intron of ITIH4(-):866bp after exon 11		GRCh37	TRANSLOCATION	10	9	Protein Fusion: out of frame  {ITIH4:BBC3}	PRECISE	3to5	ITIH4 (NM_002218) - BBC3 (NM_001127240) rearrangement: t(3;19)(p21.1;q13.32)(chr3:g.52856705::chr19:g.47725327)	yes	unknown	0	0	0	0	9
P-0057586-T02-IM6	SOMATIC	JAK1	JAK1	1	1	65252220	65325726	Intron of RAVER2(+):3Kb before exon 5	Intron of JAK1(-):61bp after exon 9		GRCh37	DELETION	0	6	Antisense Fusion	IMPPRECISE	3to5	JAK1 (NM_002227) rearrangement: c.1334+62:JAK1_chr1:g.65252220del	yes	unknown	73506	17859	27144	0	6
P-0052564-T01-IM6	SOMATIC	JAK1	JAK1	1	1	54437720	65332772	IGR: 26Kb before LRRC42(+)	Exon 7 of JAK1(-)		GRCh37	DELETION	10	31	JAK1-intragenic	PRECISE	3to5	JAK1 (NM_002227) rearrangement: c.767:JAK1_chr1:g.54437720del	yes	unknown	10895052	48055	58100	1	30
P-0074237-T02-IM7	SOMATIC	JAK1	JAK1	1	1	56836758	65332781	IGR: 124Kb before PPAP2B(-)	Exon 7 of JAK1(-)		GRCh37	INVERSION	10	15	JAK1-intragenic	PRECISE	5to5	JAK1 (NM_002227) rearrangement: c.758:JAK1_chr1:g.56836758inv	yes	unknown	8496023	55158	99176	0	17
P-0062730-T02-IM7	SOMATIC	JAK1	JAK1	1	1	37433880	65344812	Intron of GRIK3(-):66Kb after exon 1	Exon 4 of JAK1(-)		GRCh37	INVERSION	7	2	JAK1-intragenic	PRECISE	3to3	JAK1 (NM_002227) rearrangement: c.225:JAK1_chr1:g.37433880inv	yes	unknown	27910932	360138	265001	0	2
P-0006169-T01-IM5	SOMATIC	JAK1		1	1	65309878	65490725	Exon 17 of JAK1(-)	IGR: 33Kb before MIR101-1(-)		GRCh37	DUPLICATION			JAK1-intragenic	PRECISE	5to3	JAK1 (NM_002227)  Rearrangement :  c.2272:JAK1_chr1:g.65490725dup			180847	27920	28740	0	20
P-0010512-T01-IM5	SOMATIC	JAK1		1	1	65309647	76414149	Intron of JAK1(-): 100bp after exon 17	IGR: 30Kb before ASB17(-)		GRCh37	INVERSION			JAK1-intragenic	PRECISE	5to5	JAK1 (NM_002227) rearrangement : c.2403+100:JAK1_chr1:g.76414149inv see note1			11104502	79221	66584	0	13
P-0020038-T01-IM6	SOMATIC	JAK1		1	1	65332979	65567911	Intron of JAK1(-):88bp before exon 7	IGR: 44Kb before MIR101-1(-)		GRCh37	DELETION			JAK1-intragenic	PRECISE	3to5	JAK1 (NM_002227) rearrangement: c.648-88_chr1:g.65567911del			234932	5516	4517	0	9
P-0040988-T01-IM6	SOMATIC	JAK1	DEPTOR	8	1	121037868	65323270	Intron of DEPTOR(+):16Kb after exon 8	Intron of JAK1(-):68bp after exon 10		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {JAK1:DEPTOR}	PRECISE	5to5	JAK1 (NM_002227) - DEPTOR (NM_022783) rearrangement: t(1;8)(p31.3;q24.12)(chr1:g.65323270::chr8:g.121037868)			0	0	0	0	6
P-0047902-T01-IM6	SOMATIC	JAK1		3	1	129135343	65309773	Intron of EFCAB12(-):1Kb before exon 4	Exon 17 of JAK1(-)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {JAK1:EFCAB12}	PRECISE	3to5	JAK1 (NM_002227) rearrangement: t(1;3)(p31.3;q21.3)(chr1:g.65309773::chr3:g.129135343)			0	0	0	0	5
P-0025139-T01-IM6	SOMATIC	JAK1	INADL	1	1	62509463	65307153	Intron of INADL(+):6Kb after exon 30	Exon 18 of JAK1(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {JAK1:INADL}	PRECISE	5to5	JAK1 (NM_002227) - INADL (NM_176877) rearrangement: c.2535:JAK1_c.4032+5742:INADLinv			2797690	8566	7920	0	69
P-0081157-T01-IM7	SOMATIC	JAK1	ATG4C	1	1	63288179	65306776	Intron of ATG4C(+):1Kb after exon 6	Intron of JAK1(-):151bp after exon 19		GRCh37	INVERSION			Protein Fusion: out of frame  {JAK1:ATG4C}	PRECISE	5to5	JAK1 (NM_002227) - ATG4C (NM_032852) rearrangement: c.2649+152:JAK1_c.796+1299:ATG4Cinv			2018597	10877	17279	0	13
P-0025513-T03-IM7	SOMATIC	JAK1	MIR3671	1	1	65335311	65520506	Intron of JAK1(-):154bp before exon 6	Promoter of MIR3671(-):3Kb from tx start		GRCh37	DELETION	10	6	Transcript Fusion {MIR3671:JAK1}	PRECISE	3to5	JAK1 (NM_002227) rearrangement: c.484-154:JAK1_chr1:g.65520506del	yes	unknown	185195	9434	5319	0	7
P-0043696-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5063392	5064991	Intron of JAK2(+):1Kb before exon 9	Exon 9 of JAK2(+)		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	JAK2 (NM_004972) rearrangement: c.1057-1491_c.1165del	yes	unknown	1599	318	406	0	6
P-0007794-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5090887	5097361	Exon 22 of JAK2(+)	Intron of JAK2(+): 6Kb after exon 22		GRCh37	DELETION	38	27	Deletion within transcript: mid-exon	PRECISE	3to5	JAK2 (NM_004972) Rearrangement :  c.3035_c.3059+6450del	yes	unknown	6474	139	284	0	27
P-0007759-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5053476	5054581	Intron of JAK2(+): 1Kb before exon 7	Exon 7 of JAK2(+)		GRCh37	DELETION	0	10	Deletion within transcript: mid-exon	IMPRECISE	3to5	JAK2 (NM_004972) rearrangement: c.615-1087_c.633del	yes	unknown	1105	716	789	0	10
P-0014090-T01-IM5	SOMATIC	JAK2		9	9	5090562	5092253	Exon 21 of JAK2(+)	Intron of JAK2(+): 1Kb after exon 22		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	JAK2 (NM_004972) rearrangement: c.2878_c.3059+1342del			1691	1759	530	0	39
P-0056851-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5042669	5111564	Intron of JAK2(+):2Kb before exon 5	Intron of JAK2(+):11Kb before exon 23		GRCh37	DUPLICATION	8	6	Duplication of 18 exons : in frame	PRECISE	5to3	JAK2 (NM_004972) rearrangement: c.351-1734_c.3060-11440dup	yes	unknown	68895	22632	28977	0	6
P-0057591-T05-IM7	SOMATIC	JAK2		9	9	5029092	5044456	Intron of JAK2(+):690bp before exon 4	Exon 5 of JAK2(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	JAK2 (NM_004972) rearrangement: c.227-691_c.404dup			15364	1205	828	0	21
P-0018630-T01-IM6	SOMATIC	JAK2		11	9	44939223	5044464	Intron of TSPAN18(+):299bp before exon 5	Exon 5 of JAK2(+)		GRCh37	TRANSLOCATION			JAK2-intragenic	PRECISE	5to5	JAK2 (NM_004972) rearrangement: t(9;11)(q24.12;p11.2)(chr9:g.5044464::chr11:g.44939223)			0	0	0	0	46
P-0086791-T02-IM7	SOMATIC	JAK2		9	9	5089100	5090376	Intron of JAK2(+):573bp before exon 20	Intron of JAK2(+):69bp before exon 21		GRCh37	INVERSION			JAK2-intragenic	PRECISE	5to5	JAK2 (NM_004972) rearrangement: c.2572-574_c.2762-70inv			1276	1708	1114	0	14
P-0074094-T01-IM7	SOMATIC	JAK2	LINGO2	9	9	5070041	29024963	Exon 12 of JAK2(+)	5-UTR of LINGO2(-):1Mb before coding start		GRCh37	INVERSION	10	8	Protein Fusion: mid-exon  {LINGO2:JAK2}	PRECISE	5to5	JAK2 (NM_004972) rearrangement: c.1630:JAK2_chr9:g.29024963inv	yes	unknown	23954922	182229	310411	0	9
P-0052121-T01-IM6	SOMATIC	JAK2	CNTLN	9	9	5022261	17267360	Intron of JAK2(+):48bp after exon 3	Intron of CNTLN(+):6Kb before exon 6		GRCh37	DELETION			Protein Fusion: out of frame  {JAK2:CNTLN}	PRECISE	3to5	JAK2 (NM_004972) - CNTLN (NM_017738) rearrangement: c.226+48:JAK2_c.850-6371:CNTLNdel			12245099	57620	83611	0	4
P-0067938-T01-IM7	SOMATIC	JAK2	PLGRKT	9	9	5090317	5422355	Intron of JAK2(+):128bp before exon 21	Intron of PLGRKT(-):10Kb after exon 3		GRCh37	INVERSION	10	162	Protein Fusion: out of frame  {PLGRKT:JAK2}	PRECISE	5to5	JAK2 (NM_004972) rearrangement: c.2762-129:JAK2_chr9:g.5422355inv	yes	unknown	332038	11268	77308	0	210
P-0016564-T01-IM6	SOMATIC	JAK3	JAK3	19	19	17944583	17948613	Intron of JAK3(-):796bp after exon 17	Intron of JAK3(-):127bp after exon 12		GRCh37	DELETION	10	10	Deletion of 5 exons : out of frame	PRECISE	3to5	JAK3 (NM_000215) rearrangement: c.2350+797_c.1701+128del	yes	unknown	4030	7066	6661	0	10
P-0033700-T02-IM6	SOMATIC	JAK3	JAK3	19	19	10451444	17948168	Promoter of ICAM3(-):7Kb from tx start	Intron of JAK3(-):146bp before exon 13		GRCh37	INVERSION	10	19	JAK3-intragenic	PRECISE	3to3	JAK3 (NM_000215) rearrangement: c.1702-146:JAK3_chr19:g.10451444inv	yes	unknown	7496724	339998	418295	0	19
P-0047313-T01-IM6	SOMATIC	JAK3	TRHR	19	8	17945774	110031275	Exon 16 of JAK3(-)	IGR: 68Kb before TRHR(+)		GRCh37	TRANSLOCATION	10	19	JAK3-intragenic	PRECISE	5to5	JAK3 (NM_000215) rearrangement: t(8;19)(q23.1;p13.11)(chr8:g.110031275::chr19:g.17945774)	yes	unknown	0	0	0	0	26
P-0050264-T01-IM6	SOMATIC	JAK3	LINC02606	19	1	17952430	9448228	Intron of JAK3(-):18bp after exon 7	IGR: 37Kb before LOC100506022(-)		GRCh37	TRANSLOCATION	10	9	JAK3-intragenic	PRECISE	3to5	JAK3 (NM_000215) rearrangement: t(1;19)(p36.22;p13.11)(chr1:g.9448228::chr19:g.17952430)	yes	unknown	0	0	0	0	10
P-0060169-T01-IM7	SOMATIC	JAK3	LOC100420587	19	19	17946915	28900439	Intron of JAK3(-):55bp before exon 14	IGR: 26Kb before LOC100420587(-)		GRCh37	INVERSION	10	86	JAK3-intragenic	PRECISE	5to5	JAK3 (NM_000215) rearrangement: c.1787-55:JAK3_chr19:g.28900439inv	yes	unknown	10953524	178420	134116	0	104
P-0044804-T01-IM6	SOMATIC	JAK3	JAK3	19	19	1399064	17954466	Intron of GAMT(-):39bp before exon 5	Intron of JAK3(-):119bp after exon 3		GRCh37	INVERSION	10	5	JAK3-intragenic	PRECISE	3to3	JAK3 (NM_000215) rearrangement: c.308+120:JAK3_chr19:g.1399064inv	yes	unknown	16555402	720186	747907	0	5
P-0075326-T01-IM7	SOMATIC	JAK3	LINC01858	19	19	17942093	23257905	Exon 21 of JAK3(-)	IGR: 20Kb before LOC101929144(-)		GRCh37	DELETION	10	39	JAK3-intragenic	PRECISE	3to5	JAK3 (NM_000215) rearrangement: c.2922:JAK3_chr19:g.23257905del	yes	unknown	5315812	139370	142793	0	40
P-0029831-T01-IM6	SOMATIC	JAK3		19	19	16877524	17942575	Intron of NWD1(+):2Kb after exon 10	Exon 20 of JAK3(-)		GRCh37	DUPLICATION			JAK3-intragenic	PRECISE	5to3	JAK3 (NM_000215) Rearrangement: c.2713:JAK3_chr19:g.16877524dup			1065051	24438	46450	0	143
P-0030699-T01-IM6	SOMATIC	JAK3		19	11	17941916	119908524	Intron of JAK3(-):120bp after exon 21	IGR: 73Kb before TRIM29(-)		GRCh37	TRANSLOCATION			JAK3-intragenic	PRECISE	5to3	JAK3 (NM_000215) rearrangement: t(11;19)(q23.3;p13.11)(chr11:g.119908524::chr19:g.17941916)			0	0	0	0	43
P-0005174-T01-IM5	SOMATIC	JAK3	SLC5A2	19	16	17945650	31501596	Intron of JAK3(-): 11bp after exon 16	Intron of SLC5A2(+): 34bp before exon 14		GRCh37	TRANSLOCATION	23	11	Protein fusion: out of frame (JAK3-SLC5A2)	PRECISE	5to5	JAK3 (NM_000215) - SLC5A2 (NM_003041) rearrangement: t(16;19)(p13.11;p11.2)(chr16:g.31501596::chr19:g.17945650)	yes	unknown	0	0	0	0	11
P-0062724-T02-IM7	SOMATIC	JPH1	PREX2	8	8	69002986	75202719	Intron of PREX2(+):36bp after exon 20	Intron of JPH1(-):24Kb after exon 2		GRCh37	INVERSION	10	32	Protein Fusion: out of frame  {JPH1:PREX2}	PRECISE	5to5	JPH1 (NM_020647) - PREX2 (NM_024870) rearrangement: c.1139+24377:JPH1_c.2250+36:PREX2inv	yes	unknown	6199733	49564	144818	0	66
P-0082079-T01-IM7	SOMATIC	JUN		19	1	51412306	59246399	Intron of KLK4(-):201bp after exon 2	Promoter of JUN(-):63bp from tx start		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	JUN (NM_002228) rearrangement: t(1;19)(q32.2;q13.41)(chr1:g.59246399::chr19:g.51412306)			0	0	0	0	10
P-0013401-T01-IM5	SOMATIC	JUN	JUN	1	1	59238243	59247831	IGR: 8Kb before JUN(-)	Exon 1 of JUN(-)		GRCh37	INVERSION	73	78	JUN-intragenic	PRECISE	5to5	JUN (NM_002228) rearrangement: c.912:JUN_chr1:g.59238243inv	yes	unknown	9588	8329	7851	0	72
P-0061915-T01-IM7	SOMATIC	JUN	LINC01135	1	1	59248042	59262238	Exon 1 of JUN(-)	5-UTR of LINC01135(+):103Kb before coding start		GRCh37	DELETION	10	24	JUN-intragenic	PRECISE	3to5	JUN (NM_002228) rearrangement: c.701:JUN_chr1:g.59262238del	yes	unknown	14196	7604	9209	0	24
P-0073311-T01-IM7	SOMATIC	KALRN	BCL6	3	3	124340672	187442746	Intron of KALRN(+):11Kb before exon 2	Exon 9 of BCL6(-)		GRCh37	INVERSION	0	7	Protein Fusion: mid-exon  {KALRN:BCL6}	IMPPRECISE	3to3	KALRN (NM_001024660) - BCL6 (NM_001706) rearrangement: c.5177-10595:KALRN_c.1960:BCL6inv	yes	unknown	63102074	418288	437946	0	7
P-0049637-T01-IM6	SOMATIC	KANK1	MET								GRCh37				KANK1-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: KANK1-MET fusion. Note: The rearrangement is an in-frame fusion between genes KANK1 Exon3 (NM_015158) and MET Exon15 (NM_000245).	yes	unknown					
P-0049637-T01-IM6	SOMATIC	KANK1	MET	9	7	725428	116413312	Intron of KANK1(+):5Kb before exon 8	Intron of MET(+):1Kb after exon 14		GRCh37	TRANSLOCATION	10	47	Protein Fusion: in frame  {KANK1:MET}	PRECISE	3to5	KANK1 (NM_015158) - MET (NM_000245) fusion: t(7;9)(q31.2;p24.3)(chr7:g.116413312::chr9:g.725428)	yes	unknown	0	0	0	0	52
P-0058187-T01-IM6	SOMATIC	KANSL1	TERT								GRCh37				KANSL1-TERT Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: KANSL1-TERT fusion. Note: The rearrangement is a fusion between genes KANSL1 Exon2 (5'UTR, NM_001193465) and TERT Exon3 (NM_198253).	yes	unknown					
P-0021675-T01-IM6	SOMATIC	KANSL2	KMT2D	12	12	49058503	49444740	Intron of KANSL2(-):3Kb after exon 7	Exon 10 of KMT2D(-)		GRCh37	DUPLICATION	10	27	Protein Fusion: mid-exon  {KANSL2:KMT2D}	PRECISE	5to3	KANSL2 (NM_017822) - KMT2D (NM_003482) rearrangement: c.973+2973:KANSL2_c.2726:KMT2Ddup	yes	unknown	386237	110720	134930	0	35
P-0028710-T01-IM6	SOMATIC	KATNA1	LATS1	6	6	149924489	149997811	Exon 6 of KATNA1(-)	Exon 6 of LATS1(-)		GRCh37	DUPLICATION	10	42	Protein Fusion: mid-exon  {KATNA1:LATS1}	PRECISE	5to3	KATNA1 (NM_007044) - LATS1 (NM_004690) rearrangement: c.644:KATNA1_c.2656:LATS1dup	yes	unknown	73322	6195	5878	0	42
P-0057551-T01-IM6	SOMATIC	KATNA1	LATS1	6	6	149946519	150001720	Intron of KATNA1(-):2Kb before exon 4	Intron of LATS1(-):127bp before exon 5		GRCh37	DUPLICATION	9	6	Protein Fusion: out of frame  {KATNA1:LATS1}	PRECISE	5to3	KATNA1 (NM_007044) - LATS1 (NM_004690) rearrangement: c.321-2100:KATNA1_c.2011-127:LATS1dup	yes	unknown	55201	8800	10887	0	6
P-0016450-T01-IM6	SOMATIC	KAZN	SPEN	1	1	15374941	16254882	Intron of KAZN(+):4Kb after exon 4	Exon 11 of SPEN(+)		GRCh37	DUPLICATION	10	46	Protein Fusion: mid-exon  {SPEN:KAZN}	PRECISE	5to3	SPEN (NM_015001) - KAZN (NM_201628) rearrangement: c.2147:SPEN_c.726+4286:KAZNdup	yes	unknown	879941	16678	37685	0	50
P-0075924-T01-IM7	SOMATIC	KBTBD4	C1or	11	1	47594524	85683592	Exon 4 of KBTBD4(-)	IGR: 32Kb before C1orf52(-)		GRCh37	TRANSLOCATION	0	6	KBTBD4-intragenic	IMPPRECISE	5to5	KBTBD4 (NM_018095) rearrangement: (1;11)(p22.2;p11.2)(chr1:g.85683592::chr11:g.47594524)	yes	unknown	0	0	0	0	7
P-0062370-T01-IM7	SOMATIC	KCNB2	SMO	8	7	73783827	128846006	Intron of KCNB2(+):64Kb before exon 3	Exon 5 of SMO(+)		GRCh37	TRANSLOCATION	10	14	Protein Fusion: mid-exon  {KCNB2:SMO}	PRECISE	3to5	KCNB2 (NM_004770) - SMO (NM_005631) rearrangement: t(7;8)(q32.1;q13.3)(chr7:g.128846006::chr8:g.73783827)	yes	unknown	0	0	0	0	14
P-0027553-T01-IM6	SOMATIC	KCNK3	CENPA	2	2	26917069	27014937	Intron of KCNK3(+):1Kb after exon 1	Intron of CENPA(+):61bp before exon 2		GRCh37	DELETION	7	4	Protein Fusion: in frame  {KCNK3:CENPA}	PRECISE	3to5	KCNK3 (NM_002246) - CENPA (NM_001809) rearrangement: c.283+1043:KCNK3_c.101-62:CENPA	yes	unknown	97868	572	714	0	4
P-0034685-T01-IM6	SOMATIC	KCNMA1	ARID5B	10	10	63829403	78740695	Intron of ARID5B(+):55bp before exon 8	Intron of KCNMA1(-):11Kb before exon 20		GRCh37	INVERSION			Protein Fusion: out of frame  {KCNMA1:ARID5B}	PRECISE	5to5	KCNMA1 (NM_001161352) - ARID5B (NM_032199) Rearrangement : c.2267-10870:KCNMA1_c.1102-56:ARID5Binv			14911292	57979	85572	0	113
P-0033315-T01-IM6	SOMATIC	KCNMB3	PIK3CB	3	3	138426110	178983153	Exon 9 of PIK3CB(-)	Intron of KCNMB3(-):1Kb after exon 1		GRCh37	DELETION			Protein Fusion: mid-exon  {KCNMB3:PIK3CB}	PRECISE	3to5	KCNMB3 (NM_171828) - PIK3CB (NM_006219) rearrangement: c.62+1284:KCNMB3_c.1421:PIK3CBdel			40557043	151479	214291	0	111
P-0075813-T02-IM7	SOMATIC	KCNN3	RIT1	1	1	154842185	155874569	Exon 1 of KCNN3(-)	Exon 4 of RIT1(-)		GRCh37	DUPLICATION	10	30	Protein Fusion: mid-exon  {KCNN3:RIT1}	PRECISE	5to3	KCNN3 (NM_002249) - RIT1 (NM_006912) rearrangement: c.256:KCNN3_c.190:RIT1dup	yes	unknown	1032384	10696	32123	0	34
P-0055122-T01-IM6	SOMATIC	KCNN3	RIT1	1	1	154732151	155870462	Intron of KCNN3(-):12Kb after exon 3	Intron of RIT1(-):53bp before exon 6		GRCh37	DUPLICATION	10	33	Protein Fusion: out of frame  {KCNN3:RIT1}	PRECISE	5to3	KCNN3 (NM_002249) - RIT1 (NM_006912) rearrangement: c.1448+12300:KCNN3_c.430-53:RIT1dup	yes	unknown	1138311	2166	4789	0	33
P-0025326-T01-IM6	SOMATIC	KCNQ3	DROSHA	8	5	133361970	31464126	Intron of KCNQ3(-):130Kb after exon 1	Intron of DROSHA(-):216bp after exon 19		GRCh37	TRANSLOCATION	10	13	Protein Fusion: out of frame  {DROSHA:KCNQ3}	PRECISE	3to5	DROSHA (NM_013235) - KCNQ3 (NM_004519) rearrangement: t(5;8)(p13.3;q24.22)(chr5:g.31464126::chr8:g.133361970)	yes	unknown	0	0	0	0	13
P-0009490-T01-IM5	SOMATIC	KDM4C	PTPRD	9	9	7149751	8633523	Intron of KDM4C(+): 15Kb before exon 20	Intron of PTPRD(-): 65bp before exon 14		GRCh37	INVERSION	4	5	Protein fusion: in frame (KDM4C-PTPRD)	PRECISE	3to3	KDM4C (NM_015061) - PTPRD (NM_002839) rearrangement: c.2782-15487:KDM4C_c.211-65:PTPRDinv	yes	unknown	1483772	80440	121595	0	5
P-0008099-T01-IM5	SOMATIC	KDM5A	KDM5A	12	12	401993	404335	Exon 27 of KDM5A(-)	Intron of KDM5A(-): 404bp after exon 26		GRCh37	INVERSION	60	42	Antisense fusion	PRECISE	5to5	KDM5A (NM_001042603) rearrangement : c.4455+404_4798inv	yes	unknown	2342	4495	5319	0	40
P-0069258-T01-IM7	SOMATIC	KDM5A	KDM5A	12	12	494967	497323	Intron of KDM5A(-):95bp after exon 2	Intron of KDM5A(-):769bp after exon 1		GRCh37	INVERSION	10	106	Antisense Fusion	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: c.165+770_c.243+96inv	yes	unknown	2356	1574	1528	0	112
P-0076450-T01-IM7	SOMATIC	KDM5A	KDM5A	20	12	34543601	427625	Promoter of SCAND1(-):2Kb from tx start	Exon 19 of KDM5A(-)		GRCh37	TRANSLOCATION	10	35	Antisense Fusion	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: t(12;20)(p13.33;q11.23)(chr12:g.427625::chr20:g.34543601)	yes	unknown	0	0	0	0	45
P-0060951-T01-IM7	SOMATIC	KDM5A		12	12	427387	429504	Exon 19 of KDM5A(-)	Intron of KDM5A(-):656bp after exon 18		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: c.2541+657_c.2782inv			2117	1504	1616	0	86
P-0022086-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	425057	427449	Intron of KDM5A(-):2Kb after exon 19	Exon 19 of KDM5A(-)		GRCh37	DELETION	0	6	Deletion within transcript : mid-exon	IMPPRECISE	3to5	KDM5A (NM_001042603) Rearrangement: c.2720_c.2897+2215del	yes	unknown	2392	1839	1637	0	6
P-0046467-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	403622	404835	Intron of KDM5A(-):1Kb after exon 26	Exon 26 of KDM5A(-)		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	KDM5A (NM_001042603) rearrangement: c.4359_c.4455+1117del	yes	unknown	1213	683	978	0	28
P-0070748-T01-IM7	SOMATIC	KDM5A	KDM5A	12	12	475252	480683	Exon 4 of KDM5A(-)	Intron of KDM5A(-):5Kb before exon 4		GRCh37	INVERSION	10	3	KDM5A-intragenic	PRECISE	3to3	KDM5A (NM_001042603) rearrangement: c.367-5413_c.385inv	yes	unknown	5431	307	362	0	5
P-0077962-T01-IM7	SOMATIC	KDM5A	RAPGEF4-AS1	12	2	464183	173528390	Intron of KDM5A(-):140bp after exon 7	IGR: 60Kb before RAPGEF4-AS1(-)		GRCh37	TRANSLOCATION	10	17	KDM5A-intragenic	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: t(2;12)(q31.1;p13.33)(chr2:g.173528390::chr12:g.464183)	yes	unknown	0	0	0	0	17
P-0021351-T01-IM6	SOMATIC	KDM5A		12	8	495087	47164681	Exon 2 of KDM5A(-)	IGR: 588Kb before LINC00293(+)		GRCh37	TRANSLOCATION			KDM5A-intragenic	PRECISE	5to3	KDM5A (NM_001042603) rearrangement: t(8;12)(q11.1;p13.33)(chr8:g.47164681::chr12:g.495087)			0	0	0	0	25
P-0023281-T01-IM6	SOMATIC	KDM5A		12	6	438110	30437747	Exon 14 of KDM5A(-)	IGR: 19Kb before HLA-E(+)		GRCh37	TRANSLOCATION			KDM5A-intragenic	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: t(6;12)(p22.1;p13.33)(chr6:g.30437747::chr12:g.438110)			0	0	0	0	48
P-0067932-T02-IM7	SOMATIC	KDM5A		21	12	33133507	404870	IGR: 90Kb before SCAF4(-)	Exon 26 of KDM5A(-)		GRCh37	TRANSLOCATION			KDM5A-intragenic	PRECISE	3to5	KDM5A (NM_001042603) rearrangement: t(12;21)(p13.33;q22.11)(chr12:g.404870::chr21:g.33133507)			0	0	0	0	5
P-0017421-T01-IM6	SOMATIC	KDM5A		12	6	461345	20524426	Intron of KDM5A(-):25bp after exon 9	IGR: 10Kb before CDKAL1(+)		GRCh37	TRANSLOCATION			KDM5A-intragenic	PRECISE	5to3	KDM5A (NM_001042603) rearrangement: t(6;12)(p22.3;p13.33)(chr6:g.20524426::chr12:g.461345)			0	0	0	0	7
P-0030719-T01-IM6	SOMATIC	KDM5A	BMAL2	12	12	432924	27528823	Exon 15 of KDM5A(-)	Intron of ARNTL2(+):4Kb before exon 3		GRCh37	INVERSION	10	12	Protein Fusion: mid-exon  {BMAL2:KDM5A}	PRECISE	3to3	ARNTL2 (NM_001248002) - KDM5A (NM_001042603) rearrangement: c.285-4357:ARNTL2_c.1992:KDM5A	yes	unknown	27095899	313237	396561	0	12
P-0075481-T01-IM7	SOMATIC	KDM5A	ADAM8	12	10	430184	135083607	Exon 18 of KDM5A(-)	Intron of ADAM8(-):129bp before exon 17		GRCh37	TRANSLOCATION	10	99	Protein Fusion: mid-exon  {KDM5A:ADAM8}	PRECISE	5to3	KDM5A (NM_001042603) - ADAM8 (NM_001109) rearrangement: t(10;12)(q26.3;p13.33)(chr10:g.135083607::chr12:g.430184)	yes	unknown	0	0	0	0	107
P-0022798-T01-IM6	SOMATIC	KDM5A	OSBPL8	12	12	472234	76775852	Exon 5 of KDM5A(-)	Intron of OSBPL8(-):2Kb after exon 15		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {KDM5A:OSBPL8}	PRECISE	5to3	KDM5A (NM_001042603) - OSBPL8 (NM_020841) Rearrangement : c.567:KDM5A_c.1630+2182:OSBPL8dup			76303618	986778	1305737	0	19
P-0030430-T03-IM7	SOMATIC	KDM5A	NINJ2	12	12	432137	695939	Intron of KDM5A(-):110bp after exon 16	Intron of NINJ2(-):21Kb before exon 2		GRCh37	DUPLICATION	7	6	Protein Fusion: out of frame  {KDM5A:NINJ2}	PRECISE	5to3	KDM5A (NM_001042603) - NINJ2 (NM_016533) rearrangement: c.2275+111:KDM5A_c.172-20595:NINJ2dup	yes	unknown	263802	18963	30218	0	6
P-0027995-T01-IM6	SOMATIC	KDM5C	AMER1	X	X	53237713	63411271	Intron of KDM5C(-):2Kb after exon 12	Exon 2 of AMER1(-)		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	KDM5C (NM_004187) - AMER1 (NM_152424) rearrangement: c.1746+1883:KDM5C_c.1896:AMER1inv.			10173558	35478	43013	0	26
P-0077835-T02-IM7	SOMATIC	KDM5C	GREM1	X	15	53224318	33010276	Intron of KDM5C(-):68bp before exon 22	5-UTR of GREM1(+):13Kb before coding start		GRCh37	TRANSLOCATION	10	74	Antisense Fusion	PRECISE	5to3	KDM5C (NM_004187) rearrangement: t(15;X)(q13.3;p11.22)(chr15:g.33010276::chrX:g.53224318)	yes	unknown	0	0	0	0	74
P-0022099-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53236342	53244819	Intron of KDM5C(-):3Kb after exon 12	Intron of KDM5C(-):157bp after exon 7		GRCh37	DELETION	6	2	Deletion of 5 exons : in frame	PRECISE	3to5	KDM5C (NM_004187) Rearrangement : c.963+158_c.1746+3254del	yes	unknown	8477	4894	5388	0	3
P-0023192-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53218213	53231051	Promoter of KDM5C(-):2Kb from tx start	Exon 13 of KDM5C(-)		GRCh37	DELETION	10	31	Deletion within transcript : mid-exon	PRECISE	3to5	KDM5C (NM_004187) rearrangement: c.1851_c.*3936del	yes	unknown	12838	39146	35753	0	32
P-0007240-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	53237805	53239900	Intron of KDM5C(-): 2Kb after exon 12	Exon 11 of KDM5C(-)		GRCh37	DELETION	12	15	Deletion within transcript: mid-exon	PRECISE	3to5	KDM5C (NM_004187) rearrangement : c.1541_1746+1791del	yes	unknown	2095	2186	1526	0	11
P-0008483-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	53238278	53245123	Intron of KDM5C(-): 1Kb after exon 12	Exon 7 of KDM5C(-)		GRCh37	INVERSION	14	14	KDM5C-intragenic	PRECISE	3to3	KDM5C (NM_004187) rearrangement: c.817_c.1746+1318inv	yes	unknown	6845	15827	13902	0	13
P-0044573-T02-IM6	SOMATIC	KDM5C	KLF8	X	X	53243697	56088193	Intron of KDM5C(-):173bp after exon 8	IGR: 171Kb before KLF8(+)		GRCh37	INVERSION	10	5	KDM5C-intragenic	PRECISE	5to5	KDM5C (NM_004187) rearrangement: c.1122+174:KDM5C_chrX:g.56088193inv	yes	unknown	2844496	13140	18641	0	12
P-0030471-T01-IM6	SOMATIC	KDM5C		X	X	11024795	53230928	IGR: 105Kb before HCCS(+)	Intron of KDM5C(-):2bp before exon 14		GRCh37	INVERSION			KDM5C-intragenic	PRECISE	5to5	KDM5C (NM_004187) rearrangement: chrX:g.:11024795_c.1867-2inv			42206133	286437	461772	0	5
P-0059468-T02-IM7	SOMATIC	KDM5C		X	X	53221886	53223532	3-UTR of KDM5C(-):262bp after coding stop	Exon 23 of KDM5C(-)		GRCh37	INVERSION			KDM5C-intragenic	PRECISE	5to5	KDM5C (NM_004187) rearrangement: c.3827:KDM5C_chrX:g.53221886inv			1646	4147	8378	0	62
P-0030976-T01-IM6	SOMATIC	KDM6A	BMS1P20	X	22	44919395	22661479	Exon 13 of KDM6A(+)	5-UTR of BMS1P20(+):16Kb before coding start		GRCh37	TRANSLOCATION	10	7	Antisense Fusion	PRECISE	3to3	KDM6A (NM_021140) rearrangement: t(22;X)(q11.22;p11.3)(chr22:g.22661479::chrX:g.44919395)	yes	unknown	0	0	0	0	40
P-0024873-T01-IM6	SOMATIC	KDM6A	CXorf36	X	X	44938446	45005757	Exon 20 of KDM6A(+)	Promoter of CXorf36(-):2Kb from tx start		GRCh37	DELETION	10	36	Antisense Fusion	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.2994_chrX:g.45005757del	yes	unknown	67311	5584	2907	0	40
P-0005811-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44941009	44941916	Intron of KDM6A(+): 812bp before exon 21	Intron of KDM6A(+): 31bp after exon 21		GRCh37	DELETION	0	102	Deletion of 1 exon: out of frame	IMPRECISE	3to5	KDM6A  (NM_021140) Rearrangement :  c.3145-812_3209+31del	yes	unknown	907	1636	890	1	116
P-0059314-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44889202	44910760	Intron of KDM6A(+):5Kb before exon 7	Intron of KDM6A(+):193bp before exon 9		GRCh37	DELETION	10	72	Deletion of 2 exons : in frame	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.565-4974_c.655-194del	yes	unknown	21558	1065	514	0	73
P-0030526-T01-IM6	SOMATIC	KDM6A		X	X	44918718	44921277	Intron of KDM6A(+):7bp after exon 12	Intron of KDM6A(+):613bp after exon 14		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.1194+7_c.1425+613del			2559	5169	4275	0	29
P-0010463-T01-IM5	SOMATIC	KDM6A		X	X	44756529	44942601	Intron of KDM6A(+): 23Kb after exon 2	Intron of KDM6A(+): 104bp before exon 23		GRCh37	DELETION			Deletion of 20 exons: out of frame	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.225+23296_c.3285-104del			186072	64338	35548	0	29
P-0021116-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44835006	44910843	Intron of KDM6A(+):1Kb after exon 4	Intron of KDM6A(+):110bp before exon 9		GRCh37	DELETION	7	6	Deletion of 4 exons : in frame	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.384+1046_c.655-111del	yes	unknown	75837	7507	8854	0	6
P-0024538-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44922103	44929387	Intron of KDM6A(+):110bp after exon 15	Exon 17 of KDM6A(+)		GRCh37	DELETION	10	70	Deletion within transcript : mid-exon	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.1527+110_c.2487del	yes	unknown	7284	2673	138	0	77
P-0014954-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44941851	44944104	Exon 21 of KDM6A(+)	Intron of KDM6A(+): 1Kb before exon 24		GRCh37	DELETION	32	23	Deletion within transcript: mid-exon	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.3175_c.3434-1006del	yes	unknown	2253	4931	4290	0	22
P-0043568-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44896090	44896991	Intron of KDM6A(+):809bp before exon 8	Intron of KDM6A(+):57bp after exon 8		GRCh37	DUPLICATION	10	20	Duplication of 1 exon : out of frame	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.620-810_c.654+57dup	yes	unknown	901	457	351	0	20
P-0083763-T01-IM7	SOMATIC	KDM6A		X	X	44877892	44880036	Intron of KDM6A(+):2Kb before exon 6	Intron of KDM6A(+):61bp after exon 6		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.444-1963_c.564+61dup			2144	1058	1799	0	84
P-0037834-T02-IM6	SOMATIC	KDM6A		X	X	44761938	44950141	Intron of KDM6A(+):29Kb after exon 2	Intron of KDM6A(+):32bp after exon 26		GRCh37	DUPLICATION			Duplication of 24 exons : out of frame	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.225+28705_c.3878+32dup			188203	20929	30440	0	44
P-0068811-T02-IM7	SOMATIC	KDM6A	KDM6A	X	X	44927221	44942017	Intron of KDM6A(+):2Kb before exon 17	Exon 22 of KDM6A(+)		GRCh37	DUPLICATION	10	54	Duplication within transcript : mid-exon	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.1924-1603_c.3267dup	yes	unknown	14796	8183	10558	0	54
P-0073669-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44909415	44945200	Intron of KDM6A(+):2Kb before exon 9	Exon 24 of KDM6A(+)		GRCh37	DUPLICATION	10	40	Duplication within transcript : mid-exon	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.655-1539_c.3524dup	yes	unknown	35785	10304	25151	0	55
P-0039794-T01-IM6	SOMATIC	KDM6A		X	X	44850222	44921942	Intron of KDM6A(+):16Kb after exon 4	Exon 15 of KDM6A(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	KDM6A (NM_021140) rearrangement: c.384+16262_c.1476dup			71720	9028	15111	0	25
P-0046629-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44623978	44919341	IGR: 79Kb before DUSP21(+)	Exon 13 of KDM6A(+)		GRCh37	DELETION	10	5	KDM6A-intragenic	PRECISE	3to5	KDM6A (NM_021140) rearrangement: c.1269:KDM6A_chrX:g.44623978del	yes	unknown	295363	5468	9635	0	11
P-0049381-T01-IM6	SOMATIC	KDM6A	KCNH7	X	2	44918272	163611887	Exon 11 of KDM6A(+)	Intron of KCNH7(-):81Kb after exon 2		GRCh37	TRANSLOCATION	10	58	KDM6A-intragenic	PRECISE	5to3	KDM6A (NM_021140) rearrangement: t(2;X)(q24.2;p11.3)(chr2:g.163611887::chrX:g.44918272)	yes	unknown	0	0	0	0	83
P-0064086-T01-IM7	SOMATIC	KDM6A	MED13L	X	12	44948826	116440215	Intron of KDM6A(+):161bp before exon 25	Intron of MED13L(-):592bp after exon 14		GRCh37	TRANSLOCATION	7	7	KDM6A-intragenic	PRECISE	5to3	KDM6A (NM_021140) rearrangement: t(12;X)(q24.21;p11.3)(chr12:g.116440215::chrX:g.44948826)	yes	unknown	0	0	0	0	7
P-0067186-T01-IM7	SOMATIC	KDM6A	TMEM170B	X	6	44928793	11387228	Intron of KDM6A(+):30bp before exon 17	IGR: 151Kb before TMEM170B(+)		GRCh37	TRANSLOCATION	10	55	KDM6A-intragenic	PRECISE	5to3	KDM6A (NM_021140) rearrangement: t(6;X)(p24.2;p11.3)(chr6:g.11387228::chrX:g.44928793)	yes	unknown	0	0	0	0	55
P-0074132-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44917074	44928723	Intron of KDM6A(+):1Kb before exon 11	Intron of KDM6A(+):100bp before exon 17		GRCh37	INVERSION	0	8	KDM6A-intragenic	IMPPRECISE	5to5	KDM6A (NM_021140) rearrangement: c.876-1177_c.1924-101inv	yes	unknown	11649	7981	20645	0	8
P-0077087-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44929122	44931682	Exon 17 of KDM6A(+)	Intron of KDM6A(+):2Kb after exon 17		GRCh37	INVERSION	10	7	KDM6A-intragenic	PRECISE	5to5	KDM6A (NM_021140) rearrangement: c.2222_c.2702+2080inv	yes	unknown	2560	1995	3309	0	7
P-0010824-T01-IM5	SOMATIC	KDM6A		X	4	44969451	145331332	Exon 28 of KDM6A(+)	IGR: 236Kb before HHIP(+)		GRCh37	TRANSLOCATION			KDM6A-intragenic	PRECISE	5to5	KDM6A (NM_021140) Rearrangement :  t(4;X)(q31.21.3;p11.3)(chr4:g.145331332::chrX:g.44969451)			0	0	0	0	23
P-0019077-T02-IM6	SOMATIC	KDM6A		X	X	44666338	44894188	IGR: 37Kb before DUSP21(+)	Exon 7 of KDM6A(+)		GRCh37	DELETION			KDM6A-intragenic	PRECISE	3to5	KDM6A (NM_021140) rearrangement: chrX:g.44666338_c.577del			227850	7545	6402	1	35
P-0024825-T01-IM6	SOMATIC	KDM6A		X	X	36934410	44918411	IGR: 92Kb before FAM47C(+)	Intron of KDM6A(+):62bp after exon 11		GRCh37	INVERSION			KDM6A-intragenic	PRECISE	5to5	KDM6A (NM_021140) rearrangement: c.974+62:KDM6A_chrX:g.36934410inv			7984001	66243	39779	0	4
P-0070813-T01-IM7	SOMATIC	KDM6A		X	X	44910923	44913554	Intron of KDM6A(+):30bp before exon 9	Intron of KDM6A(+):354bp after exon 10		GRCh37	INVERSION			KDM6A-intragenic	PRECISE	5to5	KDM6A (NM_021140) rearrangement: c.655-31_c.875+354inv			2631	3572	4012	0	7
P-0035170-T01-IM6	SOMATIC	KDM6A	PIGL	X	17	44949188	16127247	Intron of KDM6A(+):13bp after exon 25	Intron of PIGL(+):6Kb after exon 1		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {KDM6A:PIGL}	PRECISE	3to5	KDM6A (NM_021140) - PIGL (NM_004278) Rearrangement : t(X,17)(p11.23; p12) (chrX:g.44949188::chr17:g.16127247)	yes	unknown	0	0	0	0	12
P-0044824-T01-IM6	SOMATIC	KDR		4	4	55980834	78666042	Intron of KDR(-):206bp after exon 5	Intron of CNOT6L(-):13bp before exon 7		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	KDR (NM_002253) rearrangement: c.658+207:KDR_chr4:g.78666042inv			22685208	35086	39100	0	15
P-0083533-T02-IM7	SOMATIC	KDR		4	4	55977867	55979489	Intron of KDR(-):932bp before exon 8	Exon 7 of KDR(-)		GRCh37	INVERSION			Antisense Fusion	IMPPRECISE	5to5	KDR (NM_002253) rearrangement: c.958_c.977-932inv			1622	307	111	0	5
P-0006402-T01-IM5	SOMATIC	KDR	KDR	4	4	55940149	55976521	IGR: 4Kb before KDR(-)	Intron of KDR(-): 49bp after exon 9		GRCh37	INVERSION	46	33	KDR-intragenic	PRECISE	5to5	KDR (NM_002253) rearrangement : c.1255+49_*5959inv	yes	unknown	36372	61773	49507	0	32
P-0060326-T02-IM7	SOMATIC	KDR	TNR	4	1	55971883	175275018	Intron of KDR(-):115bp after exon 12	IGR: 17Kb before TNR(-)		GRCh37	TRANSLOCATION	10	16	KDR-intragenic	PRECISE	5to5	KDR (NM_002253) rearrangement: t(1;4)(q25.1;q12)(chr1:g.175275018::chr4:g.55971883)	yes	unknown	0	0	0	0	17
P-0072373-T01-IM7	SOMATIC	KDR	KDR	4	4	55905761	55964263	IGR: 39Kb before KDR(-)	Intron of KDR(-):40bp after exon 17		GRCh37	DELETION	10	40	KDR-intragenic	PRECISE	3to5	KDR (NM_002253) rearrangement: c.2509+41:KDR_chr4:g.55905761del	yes	unknown	58502	9720	15599	0	41
P-0012919-T01-IM5	SOMATIC	KDR		4	4	55963948	99136655	Intron of KDR(-): 15bp before exon 18	IGR: 46Kb before RAP1GDS1(+)		GRCh37	DELETION			KDR-intragenic	PRECISE	3to5	KDR (NM_002253) rearrangement: chr4:g.99136655_c.2510-15del			43172707	138367	129973	0	22
P-0028892-T01-IM6	SOMATIC	KDR		4	4	55970982	117110034	Exon 13 of KDR(-)	IGR: 111Kb before MIR1973(+)		GRCh37	DELETION			KDR-intragenic	PRECISE	3to5	KDR (NM_002253) rearrangement: c.1815:KDR_chr4:g.117110034del			61139052	143458	146491	0	2
P-0083274-T01-IM7	SOMATIC	KDR		4	4	55961252	176627542	Intron of KDR(-):130bp before exon 21	Intron of GPM6A(-):5Kb before exon 3		GRCh37	INVERSION			KDR-intragenic	PRECISE	3to3	KDR (NM_002253) rearrangement: c.2818-130:KDR_chr4:g.176627542inv			120666290	381611	474174	0	16
P-0002359-T01-IM3	SOMATIC	KDR	CAMK2D	4	4	55956197	114563085	Exon 23 of KDR(-)	Intron of CAMK2D(-): 20Kb after exon 3		GRCh37	DELETION	18	9	Protein fusion: mid-exon (CAMK2D-KDR)	PRECISE	3to5	CAMK2D (NM_001221) and KDR (NM_002253) deletion (58606888bp):  CAMK2D:c.220+19784_KDR:c.3118del	yes	unknown	58606888	260383	276733	0	6
P-0047202-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10599096	10600133	Intron of KEAP1(-):771bp after exon 5	Intron of KEAP1(-):89bp before exon 5		GRCh37	DELETION	0	12	Deletion of 1 exon : in frame	IMPPRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1532-89_c.1708+772del	yes	unknown	1037	2590	964	0	18
P-0065147-T01-IM7	SOMATIC	KEAP1		19	19	10600131	10604369	Intron of KEAP1(-):87bp before exon 5	Intron of KEAP1(-):1Kb before exon 3		GRCh37	DELETION			Deletion of 2 exons : out of frame	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.640-1431_c.1532-87del			4238	8281	5712	0	58
P-0039063-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10595435	10602332	Promoter of KEAP1(-):1Kb from tx start	Exon 3 of KEAP1(-)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1246:KEAP1_chr19:g.10595435del	yes	unknown	6897	7507	6818	0	26
P-0049524-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10599985	10612345	Exon 5 of KEAP1(-)	5-UTR of KEAP1(-):15Kb before coding start		GRCh37	DELETION	10	35	Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1591:KEAP1_chr19:g.10612345del	yes	unknown	12360	16327	12676	0	38
P-0052008-T02-IM6	SOMATIC	KEAP1	KEAP1	19	19	10602402	10614981	Exon 3 of KEAP1(-)	Promoter of KEAP1(-):18Kb from tx start		GRCh37	DELETION	10	111	Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1176:KEAP1_chr19:g.10614981del	yes	unknown	12579	14292	3738	0	319
P-0055289-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10607516	10610473	Intron of KEAP1(-):3Kb after exon 2	Exon 2 of KEAP1(-)		GRCh37	DELETION	10	116	Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.237_c.639+2555del	yes	unknown	2957	4799	1473	0	123
P-0060472-T02-IM7	SOMATIC	KEAP1	KEAP1	19	19	10602319	10603791	Exon 3 of KEAP1(-)	Intron of KEAP1(-):853bp before exon 3		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.640-853_c.1259del	yes	unknown	1472	5267	3070	0	16
P-0080441-T01-IM7	SOMATIC	KEAP1	KEAP1	19	19	10600035	10600873	Exon 5 of KEAP1(-)	Intron of KEAP1(-):344bp before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1326-344_c.1541del			838	3322	2995	0	22
P-0036807-T01-IM6	SOMATIC	KEAP1		19	19	10597643	10600400	Intron of KEAP1(-):149bp before exon 6	Exon 4 of KEAP1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1455_c.1709-149del			2757	3316	1158	0	139
P-0039978-T01-IM6	SOMATIC	KEAP1		19	19	10601708	10602803	Intron of KEAP1(-):544bp after exon 3	Exon 3 of KEAP1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.775_c.1325+545del			1095	5181	1401	0	328
P-0067214-T01-IM7	SOMATIC	KEAP1		19	19	10599935	10601117	Exon 5 of KEAP1(-)	Intron of KEAP1(-):588bp before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1326-588_c.1641del			1182	3201	3664	0	7
P-0086473-T01-IM7	SOMATIC	KEAP1		19	19	10610526	10611605	Exon 2 of KEAP1(-)	5-UTR of KEAP1(-):14Kb before coding start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.184:KEAP1_chr19:g.10611605del			1079	1383	968	0	21
P-0012151-T01-IM5	SOMATIC	KEAP1	KEAP1	19	19	10602734	10604377	Exon 3 of KEAP1(-)	Intron of KEAP1(-): 1Kb before exon 3		GRCh37	DELETION	12	10	Deletion within transcript: mid-exon	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.640-1439_c.844del	yes	unknown	1643	1555	1705	0	9
P-0009714-T01-IM5	SOMATIC	KEAP1	KEAP1	19	19	10599959	10601595	Exon 5 of KEAP1(-)	Intron of KEAP1(-): 658bp after exon 3		GRCh37	DELETION	115	90	Deletion within transcript: mid-exon	PRECISE	3to5	KEAP1 (NM_203500) Rearrangement: c.1325+658_c.1617del	yes	unknown	1636	5836	4385	0	90
P-0039738-T01-IM6	SOMATIC	KEAP1		19	19	10599783	10601710	Intron of KEAP1(-):84bp after exon 5	Intron of KEAP1(-):542bp after exon 3		GRCh37	DUPLICATION			Duplication of 2 exons : out of frame	PRECISE	5to3	KEAP1 (NM_203500) rearrangement: c.1325+543_c.1708+85dup			1927	5003	7632	0	58
P-0043277-T01-IM6	SOMATIC	KEAP1	S1PR5	19	19	10610709	10618964	Exon 2 of KEAP1(-)	IGR: 4Kb before S1PR5(-)		GRCh37	DELETION	10	22	KEAP1-intragenic	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1:KEAP1_chr19:g.10618964del	yes	unknown	8255	561	414	0	26
P-0006730-T01-IM5	SOMATIC	KEAP1		19	19	10610197	35248755	Exon 2 of KEAP1(-)	IGR: 224bp before ZNF599(-)		GRCh37	DELETION			KEAP1-intragenic	PRECISE	3to5	KEAP1(NM_203500) Rearrangement: c.513_chr19:35248755del			24638558	382278	469499	0	12
P-0020008-T02-IM6	SOMATIC	KEAP1		19	19	10610082	21086726	Exon 2 of KEAP1(-)	IGR: 19Kb before ZNF85(+)		GRCh37	INVERSION			KEAP1-intragenic	PRECISE	5to5	KEAP1 (NM_203500) rearrangement: c.628_chr19:g.21086726inv.			10476644	501428	415440	0	20
P-0035272-T01-IM6	SOMATIC	KEAP1		19	19	10597571	10638808	Intron of KEAP1(-):77bp before exon 6	IGR: 15Kb before S1PR5(-)		GRCh37	DELETION			KEAP1-intragenic	PRECISE	3to5	KEAP1 (NM_203500) rearrangement: c.1709-77_chr19:g.10638808del			41237	14419	6767	0	31
P-0021895-T01-IM6	SOMATIC	KEAP1	EPHX3	19	19	10600474	15341456	Exon 4 of KEAP1(-)	Intron of EPHX3(-):316bp after exon 4		GRCh37	DELETION	10	20	Protein Fusion: mid-exon  {EPHX3:KEAP1}	PRECISE	3to5	EPHX3 (NM_024794) - KEAP1 (NM_203500) rearrangement: c.616+317:EPHX3_c.1381:KEAP1del	yes	unknown	4740982	268474	252309	0	22
P-0057240-T02-IM6	SOMATIC	KEAP1	KRI1	19	19	10610304	10670014	Exon 2 of KEAP1(-)	Intron of KRI1(-):20bp after exon 12		GRCh37	DUPLICATION	10	33	Protein Fusion: mid-exon  {KEAP1:KRI1}	PRECISE	5to3	KEAP1 (NM_203500) - KRI1 (NM_023008) rearrangement: c.406:KEAP1_c.1212+21:KRI1dup	yes	unknown	59710	5163	5302	0	49
P-0050988-T03-IM7	SOMATIC	KEAP1	ZNF83	19	19	10600442	53113817	Exon 4 of KEAP1(-)	Promoter of ZNF83(-):2Kb from tx start		GRCh37	DUPLICATION	10	15	Protein Fusion: mid-exon  {KEAP1:ZNF83}	PRECISE	5to3	KEAP1 (NM_203500) rearrangement: c.1413:KEAP1_chr19:g.53113817dup	yes	unknown	42513375	941774	951921	0	15
P-0078790-T01-IM7	SOMATIC	KEAP1	SMARCA4	19	19	10602522	11107195	Exon 3 of KEAP1(-)	Exon 11 of SMARCA4(+)		GRCh37	DELETION	10	66	SMARCA4-KEAP1 fusion	PRECISE	3to5	KEAP1 (NM_203500) - SMARCA4 (NM_003072) rearrangement: c.1056:KEAP1_c.1787:SMARCA4del	yes	unknown	504673	49047	73905	0	68
P-0023835-T01-IM6	SOMATIC	KIAA1211L	ERCC3	2	2	99519316	128036795	5-UTR of KIAA1211L(-):108Kb before coding start	Exon 10 of ERCC3(-)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {KIAA1211L:ERCC3}	PRECISE	5to3	KIAA1211L (NM_207362) - ERCC3 (NM_000122) rearrangement: c.-11+33085:KIAA1211L_c.1684:ERCC3dup			28517479	163954	211006	0	49
P-0005903-T01-IM5	SOMATIC	KIAA1267	BRIP1	17	17	44165620	59876425	Intron of KIAA1267(-): 6Kb before exon 3	Intron of BRIP1(-): 36bp after exon 9		GRCh37	INVERSION	19	19	Antisense fusion	PRECISE	5to5	BRIP1 (NM_032043)  rearrangement: c.1340+36:BRIP1_chr17:g.44165620inv.	yes	unknown	15710805	181678	199057	0	17
P-0022529-T01-IM6	SOMATIC	KIF5B	ALK								GRCh37				KIF5B-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-ALK fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon24 (NM_004521) and ALK Exon20 (NM_004304).	yes	unknown					
P-0033090-T01-IM6	SOMATIC	KIF5B	MET								GRCh37				KIF5B-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: KIF5B-MET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon24 (NM_004521) and MET Exon15 (NM_000245).	yes	unknown					
P-0030453-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon15 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0032407-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon16 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0039474-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon16 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0043704-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon23 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0036092-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon15 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0027723-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon15 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0039594-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon15 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0024559-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon15 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0018069-T01-IM6	SOMATIC	KIF5B	RET								GRCh37				KIF5B-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: KIF5B-RET fusion. Note: The rearrangement is an in-frame fusion between genes KIF5B Exon16 (NM_004521) and RET Exon12 (NM_020975).	yes	unknown					
P-0017924-T01-IM6	SOMATIC	KIF5B	ALK	10	2	32305310	29447945	Intron of KIF5B(-):723bp before exon 25	Intron of ALK(-):381bp after exon 19		GRCh37	TRANSLOCATION	10	41	Protein Fusion: in frame  {KIF5B:ALK}	PRECISE	5to3	KIF5B (NM_004521) - ALK (NM_004304) fusion: t(2;10)(p23.2;p11.22)(chr2:g.29447945::chr10:g.32305310)	yes	unknown	0	0	0	0	46
P-0021038-T01-IM6	SOMATIC	KIF5B	EGFR	10	7	32312089	55241486	Intron of KIF5B(-):125bp before exon 16	Intron of EGFR(+):127bp before exon 18		GRCh37	TRANSLOCATION	10	9	Protein Fusion: in frame  {KIF5B:EGFR}	PRECISE	5to5	KIF5B (NM_004521) - EGFR (NM_005228) rearrangement: t(7;10)(p11.2;q11.22)(chr7:g.55241486::chr10:g.32312089)	yes	unknown	0	0	0	0	12
P-0033090-T01-IM6	SOMATIC	KIF5B	MET	10	7	32305234	116412397	Intron of KIF5B(-):647bp before exon 25	Intron of MET(+):354bp after exon 14		GRCh37	TRANSLOCATION	10	18	Protein Fusion: in frame  {KIF5B:MET}	PRECISE	5to5	KIF5B (NM_004521) - MET (NM_000245) fusion (KIF5B exons 1-24 fused to MET exons 15-21):t(7;10)(q31.2;p11.22)(chr7:g.116412397::chr10:g.32305234)	yes	unknown	0	0	0	0	21
P-0043854-T01-IM6	SOMATIC	KIF5B	MET	10	7	32304904	116412098	Intron of KIF5B(-):317bp before exon 25	Intron of MET(+):55bp after exon 14		GRCh37	TRANSLOCATION	10	13	Protein Fusion: in frame  {KIF5B:MET}	PRECISE	5to5	KIF5B (NM_004521) - MET (NM_000245) fusion: t(7;10)(q31.2;p11.22)(chr7:g.116412098::chr10:g.32304904)	yes	unknown	0	0	0	0	13
P-0021150-T01-IM6	SOMATIC	KIF5B	RET	10	10	32317044	43611591	Intron of KIF5B(-):311bp after exon 15	Intron of RET(+):440bp before exon 12		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+312:KIF5B_c.2137-441:RETinv	yes	unknown	11294547	73334	81114	0	25
P-0021578-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316137	43610809	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):625bp after exon 11		GRCh37	INVERSION	10	107	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1231:KIF5B_c.2136+624:RETinv	yes	unknown	11294672	65277	78931	0	153
P-0022866-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312731	43611871	Intron of KIF5B(-):767bp before exon 16	Intron of RET(+):160bp before exon 12		GRCh37	INVERSION	10	52	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) Fusion (KIF5B exons 1-15 fused to RET exons 12-20):  c.1726-767:KIF5B_c.2137-161:RETinv	yes	unknown	11299140	53098	57874	0	72
P-0024843-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313303	43611733	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):298bp before exon 12		GRCh37	INVERSION	0	5	Protein Fusion: in frame  {KIF5B:RET}	IMPPRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 with RET exons 12-20): c.1726-1339:KIF5B_c.2137-299:RETinv	yes	unknown	11298430	52354	60063	0	6
P-0021879-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312846	43610699	Intron of KIF5B(-):882bp before exon 16	Intron of RET(+):515bp after exon 11		GRCh37	INVERSION	10	8	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B1 exons 1-15 fused with RET exons 12-20 including the kinase domain.): c.1726-882:KIF5B_c.2136+515_RETinv	yes	unknown	11297853	63148	77234	0	11
P-0021937-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316470	43611555	Intron of KIF5B(-):885bp after exon 15	Intron of RET(+):476bp before exon 12		GRCh37	INVERSION	10	67	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused with RET exons 12-20) : c.1725+886:KIF5B_c.2137-477:RETinv	yes	unknown	11295085	79282	101145	0	92
P-0025838-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312565	43610972	Intron of KIF5B(-):601bp before exon 16	Intron of RET(+):788bp after exon 11		GRCh37	INVERSION	10	70	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975)  fusion ( KIF5B exons 1-15 fused with RET exons 12-20.): c.1726-601:KIF5B_c.2136+788:RETinv	yes	unknown	11298407	49955	50083	0	106
P-0025928-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316873	43611910	Intron of KIF5B(-):482bp after exon 15	Intron of RET(+):121bp before exon 12		GRCh37	INVERSION	10	114	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+483:KIF5B_c.2137-122C>T:RETinv	yes	unknown	11295037	66514	133363	0	166
P-0016221-T01-IM6	SOMATIC	KIF5B	RET	10	10	32317081	43611268	Intron of KIF5B(-):274bp after exon 15	Intron of RET(+):763bp before exon 12		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused in-frame to RET exons 12-20) : c.1725+275:KIF5B_c.2137-764:RETinv	yes	unknown	11294187	50727	55340	0	32
P-0017214-T01-IM6	SOMATIC	KIF5B	RET	10	10	32306314	43610647	Intron of KIF5B(-):27bp before exon 24	Intron of RET(+):463bp after exon 11		GRCh37	INVERSION	10	6	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-23 fused in-frame with RET exons 12-20): c.2545-27:KIF5B_c.2136+463:RETinv	yes	unknown	11304333	54034	92286	0	7
P-0019535-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314077	43611913	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):118bp before exon 12		GRCh37	INVERSION	10	79	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1726-2113:KIF5B_c.2137-119:RETinv	yes	unknown	11297836	100061	103901	0	127
P-0020273-T02-IM6	SOMATIC	KIF5B	RET	10	10	32311645	43611819	Intron of KIF5B(-):130bp after exon 16	Intron of RET(+):212bp before exon 12		GRCh37	INVERSION	10	7	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1914+131:KIF5B_c.2137-213:RETinv	yes	unknown	11300174	81446	58765	0	8
P-0026693-T01-IM6	SOMATIC	KIF5B	RET	10	10	32306824	43610511	Intron of KIF5B(-):155bp after exon 23	Intron of RET(+):327bp after exon 11		GRCh37	INVERSION	10	17	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion:c.2544+156:KIF5_c.2136+327:RETinv.	yes	unknown	11303687	53704	85056	0	24
P-0027991-T01-IM6	SOMATIC	KIF5B	RET	10	10	32304835	43608201	Intron of KIF5B(-):248bp before exon 25	Intron of RET(+):99bp before exon 9		GRCh37	INVERSION	10	60	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-24 fused to RET exons 9-20): c.2762-248:KIF5B_c.1649-100:RETinv	yes	unknown	11303366	44166	60686	0	68
P-0025100-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314237	43611511	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):520bp before exon 12		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1726-2273:KIF5B_c.2137-521:RETinv	yes	unknown	11297274	53683	73583	0	36
P-0030453-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314360	43610911	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):727bp after exon 11		GRCh37	INVERSION	10	39	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2396:KIF5B_c.2136+727:RETinv	yes	unknown	11296551	51349	58966	0	52
P-0032407-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311546	43611730	Intron of KIF5B(-):229bp after exon 16	Intron of RET(+):301bp before exon 12		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1914+230:KIF5B_c.2137-302:RETinv	yes	unknown	11300184	58798	60225	0	41
P-0032686-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315057	43611982	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):49bp before exon 12		GRCh37	INVERSION	10	100	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2299:KIF5B_c.2137-50:RETinv	yes	unknown	11296925	66467	59981	0	108
P-0033700-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315902	43611670	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):361bp before exon 12		GRCh37	INVERSION	10	104	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1454:KIF5B_c.2137-362:RET	yes	unknown	11295768	73947	68880	0	125
P-0034357-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315493	43611187	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):844bp before exon 12		GRCh37	INVERSION	10	90	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1863:KIF5B_c.2137-845:RETinv	yes	unknown	11295694	62066	77995	0	99
P-0036637-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313695	43611965	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):66bp before exon 12		GRCh37	INVERSION	10	40	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1726-1731:KIF5B_c.2137-67:RETinv	yes	unknown	11298270	71930	74486	0	46
P-0036737-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315869	43612025	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):6bp before exon 12		GRCh37	INVERSION	10	36	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1487:KIF5B_c.2137-7:RETinv	yes	unknown	11296156	66392	61166	0	44
P-0037367-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316318	43611874	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):157bp before exon 12		GRCh37	INVERSION	10	25	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1038:KIF5B_c.2137-158:RETinv	yes	unknown	11295556	68464	63408	0	29
P-0037494-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316371	43611755	Intron of KIF5B(-):984bp after exon 15	Intron of RET(+):276bp before exon 12		GRCh37	INVERSION	10	35	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) Fusion (KIF5B exon15 fused with RET exon12 ): c.1725+985:KIF5B_c.2137-277:RETinv	yes	unknown	11295384	51589	89111	0	38
P-0039474-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311388	43610359	Intron of KIF5B(-):203bp before exon 17	Intron of RET(+):175bp after exon 11		GRCh37	INVERSION	10	81	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-203:KIF5B_c.2136+175:RETinv	yes	unknown	11298971	53003	77463	0	95
P-0032227-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315356	43611125	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):906bp before exon 12		GRCh37	INVERSION	10	27	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2000:KIF5B_c.2137-907:RETinv	yes	unknown	11295769	57008	35707	0	28
P-0042580-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315737	43610944	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):760bp after exon 11		GRCh37	INVERSION	10	36	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1619:KIF5B_c.2136+760:RETinv	yes	unknown	11295207	69016	101430	0	38
P-0045773-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315109	43611933	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):98bp before exon 12		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2247:KIF5B_c.2137-99:RETinv	yes	unknown	11296824	63221	54184	0	23
P-0046726-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316588	43610987	Intron of KIF5B(-):767bp after exon 15	Intron of RET(+):803bp after exon 11		GRCh37	INVERSION	10	55	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+768:KIF5B_c.2136+803:RETinv	yes	unknown	11294399	63947	40084	0	59
P-0046827-T02-IM6	SOMATIC	KIF5B	RET	10	10	32313269	43610889	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):705bp after exon 11		GRCh37	INVERSION	10	54	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1305:KIF5B_c.2136+705:RETinv	yes	unknown	11297620	85223	98857	0	67
P-0048829-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316408	43610616	Intron of KIF5B(-):947bp after exon 15	Intron of RET(+):432bp after exon 11		GRCh37	INVERSION	0	41	Protein Fusion: in frame  {KIF5B:RET}	IMPPRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+948:KIF5B_c.2136+432:RETinv	yes	unknown	11294208	48855	52220	0	44
P-0043007-T02-IM6	SOMATIC	KIF5B	RET	10	10	32306812	43610813	Intron of KIF5B(-):167bp after exon 23	Intron of RET(+):629bp after exon 11		GRCh37	INVERSION	10	94	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2544+168:KIF5B_c.2136+629:RETinv	yes	unknown	11304001	54691	86243	0	114
P-0052861-T02-IM6	SOMATIC	KIF5B	RET	10	10	32311205	43610260	Intron of KIF5B(-):20bp before exon 17	Intron of RET(+):76bp after exon 11		GRCh37	INVERSION	10	44	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-20:KIF5B_c.2136+76:RETinv	yes	unknown	11299055	77032	55558	0	48
P-0053175-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312246	43611162	Intron of KIF5B(-):282bp before exon 16	Intron of RET(+):869bp before exon 12		GRCh37	INVERSION	10	41	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-282:KIF5B_c.2137-870:RETinv	yes	unknown	11298916	69482	94128	0	56
P-0055183-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315558	43610308	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):124bp after exon 11		GRCh37	INVERSION	10	128	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1798:KIF5B_c.2136+124:RETinv	yes	unknown	11294750	79684	46974	0	161
P-0057072-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314848	43611106	Intron of KIF5B(-):3Kb after exon 15	Intron of RET(+):922bp after exon 11		GRCh37	INVERSION	10	48	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2508:KIF5B_c.2136+922:RETinv	yes	unknown	11296258	77352	56150	0	54
P-0060542-T01-IM7	SOMATIC	KIF5B	RET	10	10	32313034	43611582	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):449bp before exon 12		GRCh37	INVERSION	10	9	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1070:KIF5B_c.2137-450:RETinv	yes	unknown	11298548	94826	83379	0	10
P-0036092-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316218	43610413	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):229bp after exon 11		GRCh37	INVERSION	10	181	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1138:KIF5B_c.2136+229:RETinv	yes	unknown	11294195	55373	34843	1	225
P-0060748-T02-IM7	SOMATIC	KIF5B	RET	10	10	32314268	43611527	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):504bp before exon 12		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2304:KIF5B_c.2137-505:RETinv	yes	unknown	11297259	66589	128041	0	32
P-0061331-T01-IM7	SOMATIC	KIF5B	RET	10	10	32311471	43610884	Intron of KIF5B(-):286bp before exon 17	Intron of RET(+):700bp after exon 11		GRCh37	INVERSION	10	20	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-286:KIF5B_c.2136+700:RETinv	yes	unknown	11299413	75869	124988	0	20
P-0052826-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314322	43611182	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):849bp before exon 12		GRCh37	INVERSION	10	48	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2358:KIF5B_c.2137-850:RETinv	yes	unknown	11296860	42924	69835	0	61
P-0039941-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315316	43611339	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):692bp before exon 12		GRCh37	INVERSION	10	45	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2040:KIF5B_c.2137-693:RETinv	yes	unknown	11296023	72157	76746	0	51
P-0038961-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312257	43610775	Intron of KIF5B(-):293bp before exon 16	Intron of RET(+):591bp after exon 11		GRCh37	INVERSION	10	55	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-293:KIF5B_c.2136+591:RETinv	yes	unknown	11298518	60438	95835	0	67
P-0065876-T01-IM7	SOMATIC	KIF5B	RET	10	10	32313866	43611299	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):732bp before exon 12		GRCh37	INVERSION	10	8	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1902:KIF5B_c.2137-733:RETinv	yes	unknown	11297433	70913	81588	0	13
P-0062948-T03-IM7	SOMATIC	KIF5B	RET	10	10	32315731	43610211	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):27bp after exon 11		GRCh37	INVERSION	4	4	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1625:KIF5B_c.2136+27:RETinv	yes	unknown	11294480	59693	56065	0	4
P-0078556-T02-IM7	SOMATIC	KIF5B	RET	10	10	32316176	43611093	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):909bp after exon 11		GRCh37	INVERSION	10	13	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1180:KIF5B_c.2136+909:RETinv	yes	unknown	11294917	62236	51909	0	35
P-0076467-T01-IM7	SOMATIC	KIF5B	RET	10	10	32317002	43611385	Intron of KIF5B(-):353bp after exon 15	Intron of RET(+):646bp before exon 12		GRCh37	INVERSION	10	11	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+354:KIF5B_c.2137-647:RETinv	yes	unknown	11294383	63897	69810	0	11
P-0071736-T02-IM7	SOMATIC	KIF5B	RET	10	10	32312098	43611832	Intron of KIF5B(-):134bp before exon 16	Intron of RET(+):199bp before exon 12		GRCh37	INVERSION	10	25	Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-134:KIF5B_c.2137-200:RETinv	yes	unknown	11299734	82456	61959	0	30
P-0080786-T02-IM7	SOMATIC	KIF5B	RET	10	10	32315488	43611616	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):415bp before exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	IMPPRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1868:KIF5B_c.2137-416:RETinv			11296128	66499	53842	0	9
P-0032753-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316033	43610925	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):741bp after exon 11		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1323:KIF5B_c.2136+741:RETinv			11294892	47414	47634	0	91
P-0085025-T01-IM7	SOMATIC	KIF5B	RET	10	10	32306475	43611184	Intron of KIF5B(-):188bp before exon 24	Intron of RET(+):847bp before exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2545-188:KIF5B_c.2137-848:RETinv			11304709	54025	89586	0	32
P-0050262-T03-IM7	SOMATIC	KIF5B	RET	10	10	32314197	43611259	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):772bp before exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2233:KIF5B_c.2137-773:RETinv			11297062	51573	94470	0	10
P-0086121-T01-IM7	SOMATIC	KIF5B	RET	10	10	32316238	43611630	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):401bp before exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1118:KIF5B_c.2137-402:RETinv			11295392	106511	62908	0	40
P-0026777-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313518	43610717	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):533bp after exon 11		GRCh37	INVERSION			Protein Fusion: in frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1726-1554:KIF5B_c.2136+533:RETinv			11297199	49120	75075	0	66
P-0004995-T01-IM5	SOMATIC	KIF5B	RET	10	10	32314330	43610660	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 476bp after exon 11		GRCh37	INVERSION	38	36	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B(NM_004521) -RET (NM_020975)  Fusion ( KIF5B exon 15 fused to RET exon 12) : c.1726-2366:KIF5B_c.2136+476:RETinv	yes	unknown	11296330	29308	19872	0	32
P-0000208-T01-IM3	SOMATIC	KIF5B	RET	10	10	32313935	43611647	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 385bp before exon 12		GRCh37	INVERSION	65	77	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	RET (NM_020975) Inversion (c.2137-385_KIF5B:c.1726-1971inv)	yes	unknown	11297712	102491	100430	0	77
P-0008101-T01-IM5	SOMATIC	KIF5B	RET	10	10	32310097	43610455	Intron of KIF5B(-): 38bp before exon 19	Intron of RET(+): 271bp after exon 11		GRCh37	INVERSION	85	70	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-18 fused with RET exons 12-20) : c.2095-38:KIF5B_c.2136+271:RETinv	yes	unknown	11300358	47810	43201	0	67
P-0002873-T01-IM3	SOMATIC	KIF5B	RET	10	10	32312502	43611244	Intron of KIF5B(-): 538bp before exon 16	Intron of RET(+): 788bp before exon 12		GRCh37	INVERSION	45	33	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5		yes	unknown	11298742	47289	46844	0	33
P-0007424-T01-IM5	SOMATIC	KIF5B	RET	10	10	32316744	43610388	Intron of KIF5B(-): 612bp after exon 15	Intron of RET(+): 204bp after exon 11		GRCh37	INVERSION	0	4	Protein fusion: in frame (KIF5B-RET)	IMPRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20):  c.1725+612:KIF5B_c.2136+204:RETinv	yes	unknown	11293644	65005	51335	0	4
P-0011035-T01-IM5	SOMATIC	KIF5B	RET	10	10	32314260	43611322	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 710bp before exon 12		GRCh37	INVERSION	37	25	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused with RET exons 12-20) : c.1726-2296:KIF5B_c.2137-710:RETinv	yes	unknown	11297062	64054	59287	0	24
P-0000252-T01-IM3	SOMATIC	KIF5B	RET	10	10	32313497	43610597	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 413bp after exon 11		GRCh37	INVERSION	22	9	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	RET (NM_020975) Inversion (c.2136+413_KIF5B:c.1726-153inv)	yes	unknown	11297100	44662	33323	0	8
P-0002694-T02-IM5	SOMATIC	KIF5B	RET	10	10	32314319	43611682	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 350bp before exon 12		GRCh37	INVERSION	56	28	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5		yes	unknown	11297363	68269	64074	0	27
P-0012648-T01-IM5	SOMATIC	KIF5B	RET	10	10	32315493	43611697	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 335bp before exon 12		GRCh37	INVERSION	79	54	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1863:KIF5B_c.2137-335:RETinv	yes	unknown	11296204	80876	76001	0	54
P-0014808-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315591	43611055	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 871bp after exon 11		GRCh37	INVERSION	55	37	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1765:KIF5B_c.2136+871:RETinv	yes	unknown	11295464	55505	51909	0	36
P-0005573-T01-IM5	SOMATIC	KIF5B	RET	10	10	32312824	43610418	Intron of KIF5B(-): 860bp before exon 16	Intron of RET(+): 234bp after exon 11		GRCh37	INVERSION	94	47	Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975)  Fusion (KIF5B exon15 fused with RET exon12): c.1726-860:KIF5B_c.2136+234:RETinv	yes	unknown	11297594	60891	60366	0	46
P-0008289-T01-IM5	SOMATIC	KIF5B	RET	10	10	32312788	43611748	Intron of KIF5B(-): 824bp before exon 16	Intron of RET(+): 284bp before exon 12		GRCh37	INVERSION			Protein fusion: in frame (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20) : c.1726-824:KIF5B_c.2137-284:RETinv			11298960	97784	81738	0	15
P-0024225-T01-IM6	SOMATIC	KIF5B	RET	10	10	32305017	43609110	Intron of KIF5B(-):430bp before exon 25	Exon 10 of RET(+)		GRCh37	INVERSION	10	46	Protein Fusion: mid-exon  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-24 fused to RET exons 10-20): c.2762-430:KIF5B_c.1866:RETinv	yes	unknown	11304093	47729	37514	0	57
P-0027723-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316390	43610171	Intron of KIF5B(-):965bp after exon 15	Exon 11 of RET(+)		GRCh37	INVERSION	10	23	Protein Fusion: mid-exon  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 11-20):c.1725+966:KIF5B_c.2123:RETinv	yes	unknown	11293781	36970	56350	0	27
P-0059913-T01-IM7	SOMATIC	KIF5B	RET	10	10	32314915	43610108	Intron of KIF5B(-):2Kb after exon 15	Exon 11 of RET(+)		GRCh37	INVERSION	10	12	Protein Fusion: mid-exon  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2441:KIF5B_c.2060:RETinv	yes	unknown	11295193	79758	48214	0	16
P-0039257-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316224	43610060	Intron of KIF5B(-):1Kb after exon 15	Exon 11 of RET(+)		GRCh37	INVERSION	10	68	Protein Fusion: mid-exon  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1132:KIF5B_c.2012:RETinv	yes	unknown	11293836	46813	56346	0	73
P-0072326-T01-IM7	SOMATIC	KIF5B	RET	10	10	32307313	43610529	Exon 22 of KIF5B(-)	Intron of RET(+):345bp after exon 11		GRCh37	INVERSION	10	36	Protein Fusion: mid-exon  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2370:KIF5B_c.2136+345:RETinv	yes	unknown	11303216	76903	103032	0	37
P-0008764-T01-IM5	SOMATIC	KIF5B	ALK	10	2	32305750	29448327	Intron of KIF5B(-): 321bp after exon 24	Exon 19 of ALK(-)		GRCh37	TRANSLOCATION	30	81	Protein fusion: mid-exon (KIF5B-ALK)	PRECISE	5to3	KIF5B (NM_004521) - ALK (NM_004304) fusion (KIF5B exons 1-24 fused with ALK exons 19-29) : t(2;10)(p23.2;p11.22)(chr2:g.29448327::chr10:g.32305750)	yes	unknown	0	0	0	0	78
P-0013825-T01-IM5	SOMATIC	KIF5B	RET	10	10	32311908	43611520	Exon 16 of KIF5B(-)	Intron of RET(+): 512bp before exon 12		GRCh37	INVERSION	59	44	Protein fusion: mid-exon (KIF5B-RET)	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1782:KIF5B_c.2137-512:RETinv	yes	unknown	11299612	79648	68737	0	41
P-0064951-T04-IM7	SOMATIC	KIF5B	RET	10	10	32309948	43611130	Intron of KIF5B(-):1bp after exon 19	Intron of RET(+):901bp before exon 12		GRCh37	INVERSION			Protein Fusion: out of frame  {KIF5B:RET}	PRECISE	5to5	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2204+2:KIF5B_c.2137-902:RETinv			11301182	69526	83951	0	72
P-0080708-T01-IM7	SOMATIC	KIRREL3	ATM	11	11	108141916	126859237	Intron of ATM(+):43bp after exon 19	Intron of KIRREL3(-):11Kb after exon 1		GRCh37	INVERSION			Protein Fusion: out of frame  {KIRREL3:ATM}	PRECISE	5to5	KIRREL3 (NM_032531) - ATM (NM_000051) rearrangement: c.55+11114:KIRREL3_c.2921+43:ATMinv			18717321	246109	431424	0	62
P-0086456-T02-IM7	SOMATIC	KIT		4	4	55599571	73405746	Intron of KIT(+):213bp after exon 17	Intron of ADAMTS3(-):8Kb after exon 3		GRCh37	DELETION			Antisense Fusion	IMPPRECISE	3to5	KIT (NM_000222) rearrangement: c.2484+213:KIT_chr4:g.73405746del			17806175	150479	101951	0	6
P-0085354-T01-IM7	SOMATIC	KIT		4	4	55562099	55565135	Intron of KIT(+):152bp after exon 2	Intron of KIT(+):404bp after exon 3		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	KIT (NM_000222) rearrangement: c.337+152_c.619+404del			3036	2778	3213	0	13
P-0016795-T01-IM6	SOMATIC	KIT		4	4	55576694	55602832	Intron of KIT(+):989bp after exon 7	Intron of KIT(+):54bp before exon 19		GRCh37	DUPLICATION			Duplication of 11 exons : in frame	PRECISE	5to3	KIT (NM_000222) Rearrangement : c.1231+989_2597-55dup			26138	9515	20603	0	18
P-0012985-T01-IM5	SOMATIC	KIT	KIT	4	4	55603197	55618064	Intron of KIT(+): 144bp before exon 20	IGR: 11Kb after KIT(+)		GRCh37	DUPLICATION	15	10	KIT-intragenic	PRECISE	5to3	KIT (NM_000222) rearrangement: c.2697-144_chr4:g.55618064dup	yes	unknown	14867	3858	4924	0	10
P-0053054-T01-IM6	SOMATIC	KIT	KIAA1211	4	4	55564784	57194991	Intron of KIT(+):53bp after exon 3	3-UTR of KIAA1211(+):31Kb after coding stop		GRCh37	DELETION	10	17	KIT-intragenic	PRECISE	3to5	KIT (NM_000222) rearrangement: c.619+53:KIT_chr4:g.57194991del	yes	unknown	1630207	68796	89979	0	17
P-0067780-T02-IM7	SOMATIC	KIT	KIT	9	4	26249080	55561613	IGR: 182Kb before LOC100506422(+)	Intron of KIT(+):64bp before exon 2		GRCh37	TRANSLOCATION	10	25	KIT-intragenic	PRECISE	5to5	KIT (NM_000222) rearrangement: t(4;9)(q12;p21.2)(chr4:g.55561613::chr9:g.26249080)	yes	unknown	0	0	0	0	25
P-0068215-T01-IM7	SOMATIC	KIT	UGT2B4	4	4	55594236	70302524	Exon 13 of KIT(+)	IGR: 43Kb before UGT2B4(-)		GRCh37	INVERSION	10	3	KIT-intragenic	PRECISE	5to5	KIT (NM_000222) rearrangement: c.1939:KIT_chr4:g.70302524inv	yes	unknown	14708288	98911	69545	0	4
P-0068968-T01-IM7	SOMATIC	KIT	KIT	4	4	55602791	55716965	Intron of KIT(+):16bp after exon 18	IGR: 193Kb before KIT(+)		GRCh37	DELETION	10	56	KIT-intragenic	PRECISE	3to5	KIT (NM_000222) rearrangement: c.2596+16:KIT_chr4:g.55716965del	yes	unknown	114174	3577	2604	0	58
P-0078503-T01-IM7	SOMATIC	KIT	KIT	4	4	47450766	55575391	Promoter of COMMD8(-):2Kb from tx start	Intron of KIT(+):198bp before exon 7		GRCh37	INVERSION	6	7	Transcript Fusion {COMMD8:KIT}	PRECISE	5to5	KIT (NM_000222) rearrangement: c.1116-199:KIT_chr4:g.47450766inv	yes	unknown	8124625	84258	109498	0	7
P-0077346-T01-IM7	SOMATIC	KLC4	ALK	6	2	43039214	29447237	Intron of KLC4(+):90bp before exon 9	Intron of ALK(-):843bp before exon 20		GRCh37	TRANSLOCATION	10	49	Protein Fusion: in frame  {KLC4:ALK}	PRECISE	3to3	KLC4 (NM_201523) - ALK (NM_004304) fusion: t(2;6)(p23.2;p21.1)(chr2:g.29447237::chr6:g.43039214)	yes	unknown	0	0	0	0	49
P-0079299-T01-IM7	SOMATIC	KLF4	KLF4	9	9	110248426	110249499	Intron of KLF4(-):219bp before exon 5	Intron of KLF4(-):26bp before exon 4		GRCh37	DELETION	0	193	Deletion of 1 exon : in frame	IMPPRECISE	3to5	KLF4 (NM_004235) rearrangement: c.1100-26_c.1265-219del	yes	unknown	1073	1180	1878	0	248
P-0044328-T01-IM6	SOMATIC	KLF4	KLF4	9	9	108890966	110249374	IGR: 434Kb before TMEM38B(+)	Exon 4 of KLF4(-)		GRCh37	INVERSION	10	6	KLF4-intragenic	PRECISE	5to5	KLF4 (NM_004235) rearrangement: c.1199:KLF4_chr9:g.108890966inv	yes	unknown	1358408	4451	6883	0	6
P-0049071-T01-IM6	SOMATIC	KLF4		9	9	110231435	110250044	Promoter of LINC01509(-):49Kb from tx start	Exon 3 of KLF4(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {KLF4:LINC01509}	PRECISE	3to5	KLF4 (NM_004235) rearrangement: c.631:KLF4_chr9:g.110231435del			18609	9341	6999	0	6
P-0063588-T01-IM7	SOMATIC	KLF4	KLF4	17	9	54991738	110250132	Promoter of TRIM25(-):26Kb from tx start	Exon 3 of KLF4(-)		GRCh37	TRANSLOCATION	10	19	Protein Fusion: mid-exon  {TRIM25:KLF4}	PRECISE	5to3	KLF4 (NM_004235) rearrangement: t(9;17)(q31.2;q22)(chr9:g.110250132::chr17:g.54991738)	yes	unknown	0	0	0	0	20
P-0070609-T01-IM7	SOMATIC	KLF5	KLF5	13	13	73637066	73640283	Intron of KLF5(+):194bp after exon 2	Intron of KLF5(+):2Kb after exon 3		GRCh37	DELETION	10	14	Deletion of 1 exon : in frame	PRECISE	3to5	KLF5 (NM_001730): rearrangement: c.1135+194_c.1195+2262del	yes	unknown	3217	814	711	0	14
P-0059129-T01-IM7	SOMATIC	KLF5		13	13	62401491	73633598	IGR: 176Kb before LINC00358(-)	Exon 1 of KLF5(+)		GRCh37	DELETION			KLF5-intragenic	PRECISE	3to5	KLF5 (NM_001730) rearrangement: c.133:KLF5_chr13:g.62401491del			11232107	53431	64431	0	18
P-0072152-T02-IM7	SOMATIC	KLF5		13	13	73649949	73650451	Exon 4 of KLF5(+)	3-UTR of KLF5(+):17Kb after coding stop		GRCh37	INVERSION			KLF5-intragenic	PRECISE	5to5	KLF5 (NM_001730): rearrangement: c.1299_c.*427inv			502	706	1578	0	37
P-0080411-T02-IM7	SOMATIC	KLF5		13	2	73641908	240713925	Intron of KLF5(+):4Kb after exon 3	5-UTR of LOC150935(+):8Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {KLF5:LOC150935}	PRECISE	3to5	KLF5 (NM_001730) rearrangement: t(2;13)(2q37.3;13q22.1)(chr2:g.240713925::chr13:g.73641908)			0	0	0	0	25
P-0036235-T01-IM6	SOMATIC	KLK2	ETV1	19	7	51377605	13975427	Intron of KLK2(+):371bp before exon 2	Exon 7 of ETV1(-)		GRCh37	TRANSLOCATION	10	95	Protein Fusion: mid-exon  {KLK2:ETV1}	PRECISE	3to3	KLK2 (NM_005551) - ETV1(NM_001163147) rearrangement: t(7;19)(p21.2;q13.33)(chr7:g.13975427::chr19:g.51377605)	yes	unknown	0	0	0	0	94
P-0049439-T01-IM6	SOMATIC	KLK3	TMPRSS2	21	19	42843855	51359165	Exon 10 of TMPRSS2(-)	Intron of KLK3(+):330bp before exon 2		GRCh37	TRANSLOCATION	10	63	Protein Fusion: mid-exon  {KLK3:TMPRSS2}	PRECISE	3to3	KLK3 (NM_001648) - TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.33;q22.3)(chr19:g.51359165::chr21:g.42843855)	yes	unknown	0	0	0	1	60
P-0047752-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	118305881	118307492	Promoter of KMT2A(+):1Kb from tx start	Exon 1 of KMT2A(+)		GRCh37	DELETION	10	45	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2A (NM_001197104) rearrangement: c.265:KMT2A_chr11:g.118305881del	yes	unknown	1611	428	558	0	46
P-0057229-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118369185	118378519	Exon 22 of KMT2A(+)	Intron of KMT2A(+):195bp after exon 28		GRCh37	DUPLICATION	10	13	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2A (NM_001197104) rearrangement: c.5903_c.10835+195dup	yes	unknown	9334	19906	18644	0	14
P-0023445-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118375092	118395732	Exon 27 of KMT2A(+)	3-UTR of KMT2A(+):89Kb after coding stop		GRCh37	INVERSION	10	14	KMT2A-intragenic	PRECISE	3to3	KMT2A (NM_001197104) rearrangement: c.8485_c.*2845inv	yes	unknown	20640	21224	26643	0	16
P-0036133-T02-IM6	SOMATIC	KMT2A	KMT2A	16	11	22942901	118392229	IGR: 117Kb before HS3ST2(+)	Intron of KMT2A(+):97bp after exon 35		GRCh37	TRANSLOCATION	7	5	KMT2A-intragenic	PRECISE	5to3	KMT2A (NM_001197104) rearrangement: t(11;16)(q23.3;p12.2)(chr11:g.118392229::chr16:g.22942901)	yes	unknown	0	0	0	0	5
P-0045298-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	80166458	118375973	IGR: 296Kb before LOC101928944(-)	Exon 27 of KMT2A(+)		GRCh37	DELETION	10	87	KMT2A-intragenic	PRECISE	3to5	KMT2A (NM_001197104) rearrangement: c.9366:KMT2A_chr11:g.80166458del	yes	unknown	38209515	314951	225118	0	93
P-0055520-T01-IM6	SOMATIC	KMT2A		11	11	118374735	129242161	Exon 27 of KMT2A(+)	IGR: 4Kb before BARX2(+)		GRCh37	INVERSION			KMT2A-intragenic	PRECISE	3to3	KMT2A (NM_001197104) rearrangement: c.8128:KMT2A_chr11:g.129242161inv			10867426	57659	86264	0	4
P-0056502-T01-IM6	SOMATIC	KMT2A		11	11	63602288	118347732	IGR: 4Kb before MARK2(+)	Intron of KMT2A(+):35bp after exon 4		GRCh37	INVERSION			KMT2A-intragenic	PRECISE	3to3	KMT2A (NM_001197104) rearrangement: c.3334+35:KMT2A_chr11:g.63602288inv			54745444	447330	423537	0	54
P-0045617-T01-IM6	SOMATIC	KMT2A	OPCML	11	11	118352748	133388889	Exon 7 of KMT2A(+)	Intron of OPCML(-):13Kb after exon 1		GRCh37	INVERSION	10	20	Protein Fusion: mid-exon  {KMT2A:OPCML}	PRECISE	3to3	KMT2A (NM_001197104) rearrangement: c.3953:KMT2A_chr11:g.133388889inv	yes	unknown	15036141	75609	103512	0	20
P-0033899-T01-IM6	SOMATIC	KMT2A	PHC2	11	1	118342947	33810963	Exon 3 of KMT2A(+)	Intron of PHC2(-):9Kb after exon 8		GRCh37	TRANSLOCATION	10	6	Protein Fusion: mid-exon  {KMT2A:PHC2}	PRECISE	3to3	KMT2A (NM_001197104) - PHC2 (NM_198040) rearrangement: t(1;11)(p35.3;q23.3)(chr1:g.33810963::chr11:g.118342947)	yes	unknown	0	0	0	0	5
P-0022198-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	114253339	118342426	Promoter of LOC101928940(-):22Kb from tx start	Exon 3 of KMT2A(+)		GRCh37	INVERSION	10	14	Protein Fusion: mid-exon  {LOC101928940:KMT2A}	PRECISE	5to5	KMT2A (NM_001197104) rearrangement: chr11:g.114253339_c.552inv	yes	unknown	4089087	4919	7571	0	16
P-0040730-T02-IM6	SOMATIC	KMT2A	MTMR2	11	11	95648568	118362170	Intron of MTMR2(-):8Kb after exon 1	Intron of KMT2A(+):137bp after exon 14		GRCh37	INVERSION	10	15	Protein Fusion: out of frame  {KMT2A:MTMR2}	PRECISE	3to3	KMT2A (NM_001197104) - MTMR2 (NM_016156) rearrangement: c.4819+137:KMT2A_c.80+8471:MTMR2inv	yes	unknown	22713602	147009	267058	0	15
P-0055449-T01-IM6	SOMATIC	KMT2B	ZFP14	19	19	36214939	36872363	Intron of KMT2B(+):31bp after exon 8	Promoter of ZFP14(-):47Kb from tx start		GRCh37	DELETION	3	2	Antisense Fusion	PRECISE	3to5	KMT2B (NM_014727) rearrangement: c.3334+31:KMT2B_chr19:g.36872363del	yes	unknown	657424	98755	22081	0	2
P-0036885-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36209343	36213243	Intron of KMT2B(+):60bp after exon 1	Intron of KMT2B(+):17bp before exon 4		GRCh37	DELETION	10	15	Deletion of 2 exons : in frame	PRECISE	3to5	KMT2B (NM_014727) rearrangement: c.363+60_c.2458-18del	yes	unknown	3900	19955	10492	0	15
P-0045139-T01-IM6	SOMATIC	KMT2B		19	19	36206971	36209184	Promoter of KMT2B(+):2Kb from tx start	Exon 1 of KMT2B(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KMT2B (NM_014727) rearrangement: c.264:KMT2B_chr19:g.36206971del			2213	168	234	0	4
P-0039420-T01-IM6	SOMATIC	KMT2B	AKAP6	19	14	36210604	33173134	Intron of KMT2B(+):81bp before exon 3	Intron of AKAP6(+):8Kb after exon 9		GRCh37	TRANSLOCATION	10	60	KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: t(14;19)(q12;q13.12)(chr14:g.33173134::chr19:g.36210604)	yes	unknown	0	0	0	0	62
P-0047080-T01-IM6	SOMATIC	KMT2B	ZNF835	19	19	36217045	57191978	Intron of KMT2B(+):91bp before exon 14	IGR: 18Kb before ZNF835(-)		GRCh37	INVERSION	10	70	KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: c.3886-92:KMT2B_chr19:g.57191978inv	yes	unknown	20974933	393196	515731	0	100
P-0024223-T01-IM6	SOMATIC	KMT2B	HSPB6	19	19	36211645	36248854	Exon 3 of KMT2B(+)	Promoter of HSPB6(-):3Kb from tx start		GRCh37	DUPLICATION	10	27	KMT2B-intragenic	PRECISE	5to3	KMT2B (NM_014727) rearrangement: c.1396_chr19:g.36248854dup	yes	unknown	37209	113829	133104	0	27
P-0044548-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36223987	36226629	Exon 28 of KMT2B(+)	Intron of KMT2B(+):961bp before exon 31		GRCh37	INVERSION	10	7	KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: c.6537_c.7160-962inv	yes	unknown	2642	6143	7191	0	10
P-0080072-T01-IM7	SOMATIC	KMT2B	KMT2B	20	19	14520489	36228430	Intron of MACROD2(+):46Kb after exon 4	Intron of KMT2B(+):106bp before exon 34		GRCh37	TRANSLOCATION	10	14	KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: t(19;20)(q13.12;p12.1)(chr19:g.36228430::chr20:g.14520489)	yes	unknown	0	0	0	0	14
P-0023835-T01-IM6	SOMATIC	KMT2B		19	19	36229354	55726888	Exon 37 of KMT2B(+)	IGR: 11Kb before TMEM86B(-)		GRCh37	INVERSION			KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: c.8044_chr19:g.55726888inv			19497534	192955	353663	0	84
P-0027098-T01-IM6	SOMATIC	KMT2B		19	6	36214642	57161995	Exon 8 of KMT2B(+)	IGR: 18Kb before PRIM2(+)		GRCh37	TRANSLOCATION			KMT2B-intragenic	PRECISE	3to3	KMT2B (NM_014727) rearrangement: t(6;19)(p11.2;q13.12)(chr6:g.57161995::chr19:g.36214642)			0	0	0	0	28
P-0033720-T01-IM6	SOMATIC	KMT2B		19	19	35558580	36210369	3-UTR of HPN-AS1(-):39Kb after coding stop	Intron of KMT2B(+):1bp before exon 2		GRCh37	DELETION			KMT2B-intragenic	PRECISE	3to5	KMT2B (NM_014727) Rearrangement :chr19:g.35558580_c.364-2:KMT2Bdel			651789	1708	1276	0	7
P-0034920-T01-IM6	SOMATIC	KMT2B		20	19	51347028	36216506	IGR: 110Kb before LINC01524(+)	Exon 12 of KMT2B(+)		GRCh37	TRANSLOCATION			KMT2B-intragenic	PRECISE	5to3	KMT2B (NM_014727) rearrangement: t(19;20)(q13.12;q13.2)(chr19:g.36216506::chr20:g.51347028)			0	0	0	0	516
P-0018245-T01-IM6	SOMATIC	KMT2B		20	19	19374059	36216347	Intron of SLC24A3(+):112Kb after exon 2	Intron of KMT2B(+):32bp before exon 12		GRCh37	TRANSLOCATION			KMT2B-intragenic	PRECISE	5to5	KMT2B (NM_014727) rearrangement: t(19;20)(q13.12;p11.23)(chr19:g.36216347::chr20:g.19374059)			0	0	0	0	20
P-0036117-T01-IM6	SOMATIC	KMT2B	NFKBID	19	19	36219728	36379015	Exon 20 of KMT2B(+)	Promoter of NFKBID(-):127bp from tx start		GRCh37	INVERSION	10	26	Protein Fusion: mid-exon  {NFKBID:KMT2B}	PRECISE	5to5	KMT2B (NM_014727) rearrangement: c.4625_chr19:g.36379015inv	yes	unknown	159287	18758	55010	0	43
P-0060134-T01-IM7	SOMATIC	KMT2B	ACPT	19	19	36224616	51294806	Intron of KMT2B(+):29bp after exon 29	Intron of ACPT(+):106bp before exon 4		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {KMT2B:ACPT}	PRECISE	3to5	KMT2B (NM_014727) - ACPT (NM_033068) rearrangement: c.7049+29:KMT2B_c.304-107:ACPTdel	yes	unknown	15070190	395292	320138	0	31
P-0039420-T01-IM6	SOMATIC	KMT2B	STRN3	19	14	36216822	31390746	Intron of KMT2B(+):103bp after exon 13	Intron of STRN3(-):2Kb before exon 9		GRCh37	TRANSLOCATION	10	52	Protein Fusion: out of frame  {KMT2B:STRN3}	PRECISE	3to3	KMT2B (NM_014727) - STRN3 (NM_001083893) rearrangement: t(14;19)(q12;q13.12)(chr14:g.31390746::chr19:g.36216822)	yes	unknown	0	0	0	0	50
P-0035522-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151872336	151874747	Intron of KMT2C(-):939bp after exon 38	Exon 38 of KMT2C(-)		GRCh37	INVERSION	10	18	Antisense Fusion	PRECISE	5to5	KMT2C (NM_170606) rearrangement: c.7791_c.9262+940inv	yes	unknown	2411	6091	9593	0	21
P-0049610-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151816647	151845063	Intron of GALNT11(+):780bp after exon 10	Intron of KMT2C(-):54bp after exon 52		GRCh37	DELETION	10	66	Antisense Fusion	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.13894+55:KMT2C_chr7:g.151816647del	yes	unknown	28416	7995	4903	0	67
P-0022811-T01-IM6	SOMATIC	KMT2C	SSU72	7	1	151902162	1500228	Intron of KMT2C(-):28bp after exon 25	Exon 2 of SSU72(-)		GRCh37	TRANSLOCATION	10	13	Antisense Fusion	PRECISE	5to5	KMT2C (NM_170606) rearrangement: t(1;7)(p36.33;q36.1)(chr1:g.1500228:chr7:g.151902162)	yes	unknown	0	0	0	0	25
P-0038018-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151854877	151952175	Intron of KMT2C(-):1Kb after exon 44	Intron of KMT2C(-):2Kb before exon 10		GRCh37	INVERSION	10	4	Antisense Fusion	PRECISE	5to5	KMT2C (NM_170606) Rearrangement: c.1300-2375_c.11670+1071inv	yes	unknown	97298	60220	63288	0	6
P-0024556-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	146699948	151860842	Intron of CNTNAP2(+):41Kb before exon 4	Exon 43 of KMT2C(-)		GRCh37	DELETION	10	39	Antisense Fusion	PRECISE	3to5	KMT2C (NM_170606) Rearrangement : c.403-41051:CNTNAP2_c.9820:KMT2Cdel	yes	unknown	5160894	75816	96355	0	40
P-0056867-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151836487	151838326	Intron of KMT2C(-):143bp before exon 57	Intron of KMT2C(-):1Kb before exon 56		GRCh37	DELETION	10	11	Deletion of 1 exon : in frame	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.14344-1450_c.14461-143del	yes	unknown	1839	1438	616	0	10
P-0034811-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151916746	152008811	Intron of KMT2C(-):861bp after exon 23	Intron of KMT2C(-):71bp after exon 5		GRCh37	DELETION	10	26	Deletion of 18 exons : in frame	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.739+72_c.3712+862del	yes	unknown	92065	22528	20059	0	28
P-0050938-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151836035	151836898	Intron of KMT2C(-):46bp before exon 58	Intron of KMT2C(-):22bp before exon 56		GRCh37	DELETION	10	27	Deletion of 2 exons : out of frame	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.14344-22_c.14535-46del	yes	unknown	863	2723	2062	0	27
P-0049956-T01-IM6	SOMATIC	KMT2C		7	7	151838491	151884596	Intron of KMT2C(-):2Kb before exon 56	Intron of KMT2C(-):35bp before exon 33		GRCh37	DELETION			Deletion of 23 exons : out of frame	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.4794-35_c.14344-1615del			46105	57043	81749	0	13
P-0030526-T01-IM6	SOMATIC	KMT2C		7	7	151891244	152037737	Intron of KMT2C(-):31bp before exon 31	Intron of KMT2C(-):10Kb before exon 3		GRCh37	DELETION			Deletion of 28 exons : in frame	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.251-9913_c.4541-31del			146493	32365	29181	0	10
P-0021239-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874086	151877934	Exon 38 of KMT2C(-)	Exon 36 of KMT2C(-)		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.8452_c.7011del	yes	unknown	3848	9176	10526	0	10
P-0026768-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151858502	151860043	Intron of KMT2C(-):699bp after exon 43	Exon 43 of KMT2C(-)		GRCh37	DELETION	10	30	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.11460+700_c.10619del	yes	unknown	1541	2397	1987	0	32
P-0037831-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151875002	151877411	Exon 38 of KMT2C(-)	Intron of KMT2C(-):200bp before exon 37		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.7150-200_c.7150-200del	yes	unknown	2409	1716	2542	0	29
P-0042167-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874062	152085118	Exon 38 of KMT2C(-)	Intron of KMT2C(-):29Kb before exon 2		GRCh37	DELETION	10	34	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.162-29358_c.8476del	yes	unknown	211056	61369	36412	0	34
P-0031769-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151842938	151843767	Intron of KMT2C(-):558bp before exon 54	Exon 53 of KMT2C(-)		GRCh37	DELETION	10	17	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.13948_c.14032-558del	yes	unknown	829	435	693	0	18
P-0019855-T01-IM6	SOMATIC	KMT2C		7	7	151880598	151945617	Intron of KMT2C(-):357bp before exon 35	Exon 14 of KMT2C(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.1902_c.5083-357del			65019	26198	20943	0	89
P-0021014-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151866191	152004903	Intron of KMT2C(-):79bp after exon 41	Intron of KMT2C(-):2Kb after exon 6		GRCh37	DUPLICATION	10	9	Duplication of 35 exons : out of frame	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.9517+80_c.849+2148dup	yes	unknown	138712	75594	99862	0	9
P-0019222-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151860388	151867651	Exon 43 of KMT2C(-)	Intron of KMT2C(-):697bp after exon 40		GRCh37	DUPLICATION	10	57	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.9453+698_c.10274dup	yes	unknown	7263	6249	9635	0	65
P-0032658-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151878081	151887848	Exon 36 of KMT2C(-)	Intron of KMT2C(-):3Kb before exon 32		GRCh37	DUPLICATION	10	111	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) Rearrangement: c.4661-2916_c.6864dup	yes	unknown	9767	15844	20064	0	117
P-0049068-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874759	151986742	Exon 38 of KMT2C(-)	Intron of KMT2C(-):16Kb before exon 7		GRCh37	DUPLICATION	10	9	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.850-15790_c.7779dup	yes	unknown	111983	41338	68807	0	11
P-0055999-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151878613	151887651	Exon 36 of KMT2C(-)	Intron of KMT2C(-):3Kb before exon 32		GRCh37	DUPLICATION	10	8	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.4661-2719_c.6332dup	yes	unknown	9038	9944	14913	0	8
P-0040463-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151843765	151847844	Exon 53 of KMT2C(-)	Intron of KMT2C(-):140bp after exon 51		GRCh37	DUPLICATION	10	13	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.12774+141_c.13950dup	yes	unknown	4079	7176	11694	0	14
P-0036850-T01-IM6	SOMATIC	KMT2C		7	7	151859995	151999385	Exon 43 of KMT2C(-)	Intron of KMT2C(-):8Kb after exon 6		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	KMT2C (NM_170606) rearrangement: c.849+7666_c.10667dup			139390	69010	145199	0	78
P-0040995-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	150477103	151882704	IGR: 11Kb before TMEM176B(-)	Exon 34 of KMT2C(-)		GRCh37	DELETION	10	9	KMT2C-intragenic	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.5021:KMT2C_chr7:g.150477103del	yes	unknown	1405601	78468	68279	0	16
P-0048625-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151827867	151836782	IGR: 4Kb before KMT2C(-)	Exon 56 of KMT2C(-)		GRCh37	DELETION	5	4	KMT2C-intragenic	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.14438:KMT2C_chr7:g.151827867del	yes	unknown	8915	3372	2032	0	4
P-0052998-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	114339212	151853140	IGR: 46Kb before MIR3666(+)	Exon 46 of KMT2C(-)		GRCh37	DELETION	10	7	KMT2C-intragenic	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.11815:KMT2C_chr7:g.114339212del	yes	unknown	37513928	320196	358774	0	8
P-0054669-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151853058	151864671	Exon 46 of KMT2C(-)	Intron of KMT2C(-):208bp before exon 42		GRCh37	INVERSION	0	5	KMT2C-intragenic	IMPPRECISE	3to3	KMT2C (NM_170606) rearrangement: c.9518-208_c.11897inv	yes	unknown	11613	13546	14505	0	5
P-0056951-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151569151	151896468	Intron of PRKAG2(-):4Kb after exon 1	Exon 27 of KMT2C(-)		GRCh37	INVERSION	10	95	KMT2C-intragenic	PRECISE	3to3	KMT2C (NM_170606) rearrangement: c.4169:KMT2C_chr7:g.151569151inv	yes	unknown	327317	69742	90961	0	94
P-0042487-T01-IM6	SOMATIC	KMT2C	XRCC2	7	7	151917636	152334919	Exon 23 of KMT2C(-)	IGR: 9Kb before XRCC2(-)		GRCh37	INVERSION	10	6	KMT2C-intragenic	PRECISE	5to5	KMT2C (NM_170606) rearrangement: c.3684:KMT2C_chr7:g.152334919inv	yes	unknown	417283	31226	37818	0	34
P-0018536-T01-IM6	SOMATIC	KMT2C		7	6	151891246	106189129	Intron of KMT2C(-):33bp before exon 31	IGR: 345Kb before PRDM1(+)		GRCh37	TRANSLOCATION			KMT2C-intragenic	PRECISE	5to3	KMT2C (NM_170606)  Rearrangement :  t(6;7)(q21;q36.1)(chr6:g.106189129::chr7:g.151891246)			0	0	0	0	64
P-0023197-T01-IM6	SOMATIC	KMT2C		7	7	151853092	152760077	Exon 46 of KMT2C(-)	IGR: 303Kb before ACTR3B(+)		GRCh37	DELETION			KMT2C-intragenic	PRECISE	3to5	KMT2C (NM_170606) rearrangement: c.11863:KMT2C_chr7:g.152760077del			906985	99340	100218	0	5
P-0027082-T01-IM6	SOMATIC	KMT2C		7	7	150053665	151845621	IGR: 10Kb before RNU6-33P(+)	Exon 52 of KMT2C(-)		GRCh37	DELETION			KMT2C-intragenic	PRECISE	3to5	KMT2C (NM_170606) rearrangement: chr7:g.150053665_c.13391:KMT2Cdel			1791956	16474	24855	0	38
P-0017051-T01-IM6	SOMATIC	KMT2C	PAXIP1-AS2	7	7	151845376	154725568	Exon 52 of KMT2C(-)	5-UTR of PAXIP1-AS2(+):13Kb before coding start		GRCh37	INVERSION	10	11	Protein Fusion: mid-exon  {PAXIP1-AS2:KMT2C}	PRECISE	3to3	KMT2C (NM_170606) rearrangement: c.13636:KMT2C_chr7:g.154725568inv	yes	unknown	2880192	86227	161459	0	11
P-0006424-T02-IM6	SOMATIC	KMT2C	PUM1	7	1	151873311	31532327	Exon 38 of KMT2C(-)	Exon 2 of PUM1(-)		GRCh37	TRANSLOCATION	10	14	Protein Fusion: mid-exon  {PUM1:KMT2C}	PRECISE	3to5	PUM1 (NM_001020658) - KMT2C (NM_170606) rearrangement: t(1;7)(p35.2;q36.1)(chr1:g.31532327::chr7:g.151873311)	yes	unknown	0	0	0	0	14
P-0047470-T02-IM6	SOMATIC	KMT2C	PRKAG2	7	7	151431680	151847911	Intron of PRKAG2(-):47Kb after exon 3	Intron of KMT2C(-):73bp after exon 51		GRCh37	DELETION	0	6	Protein Fusion: out of frame  {KMT2C:PRKAG2}	IMPPRECISE	3to5	KMT2C (NM_170606) - PRKAG2 (NM_016203) rearrangement: c.12774+74:KMT2C_c.466+46558:PRKAG2del	yes	unknown	416231	13505	13384	0	7
P-0050407-T01-IM6	SOMATIC	KMT2C	PRKAG2	7	7	151486001	151836076	Intron of PRKAG2(-):2Kb before exon 2	Intron of KMT2C(-):87bp before exon 58		GRCh37	DELETION	10	15	Protein Fusion: out of frame  {KMT2C:PRKAG2}	PRECISE	3to5	KMT2C (NM_170606) - PRKAG2 (NM_016203) rearrangement: c.14535-87:KMT2C_c.115-2374:PRKAG2del	yes	unknown	350075	3130	3299	0	15
P-0016941-T01-IM6	SOMATIC	KMT2C	PTPRN2	7	7	151836036	158185790	Intron of KMT2C(-):47bp before exon 58	Intron of PTPRN2(-):76Kb before exon 3		GRCh37	DELETION	10	28	Protein Fusion: out of frame  {PTPRN2:KMT2C}	PRECISE	3to5	PTPRN2 (NM_002847) - KMT2C (NM_170606) rearrangement: c.164-76166: PTPRN2_c.14535-47: KMT2Cdel	yes	unknown	6349754	119541	210588	0	29
P-0030184-T01-IM6	SOMATIC	KMT2D		12	12	49433351	75706091	Exon 32 of KMT2D(-)	Intron of CAPS2(-):536bp after exon 8		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	KMT2D (NM_003482) rearrangement: c.8096:KMT2D_chr12:g.75706091inv			26272740	219536	244765	0	85
P-0025550-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49429789	49447118	Intron of KMT2D(-):1Kb before exon 35	Intron of KMT2D(-):14bp before exon 7		GRCh37	DELETION	10	5	Deletion of 28 exons : out of frame	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.840-14_c.10232-1071del	yes	unknown	17329	81471	50635	0	6
P-0019584-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49444999	49446466	Exon 10 of KMT2D(-)	Exon 9 of KMT2D(-)		GRCh37	DELETION	10	40	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.1139_c.2467del	yes	unknown	1467	17317	10021	0	40
P-0036546-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49442891	49446062	Exon 12 of KMT2D(-)	Exon 10 of KMT2D(-)		GRCh37	DELETION	10	33	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.1404_c.4017del	yes	unknown	3171	37711	25263	0	36
P-0040519-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49412345	49415628	Promoter of KMT2D(-):412bp from tx start	Exon 54 of KMT2D(-)		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.16549:KMT2D_chr12:g.49412345del	yes	unknown	3283	294	339	0	12
P-0046008-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49435331	49436872	Intron of KMT2D(-):13bp before exon 31	Exon 25 of KMT2D(-)		GRCh37	DELETION	6	2	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.5631_c.6235-13del	yes	unknown	1541	7374	7581	0	2
P-0048293-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49439352	49440420	Intron of KMT2D(-):350bp after exon 18	Exon 15 of KMT2D(-)		GRCh37	DELETION	10	18	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.4390_c.4741+351del	yes	unknown	1068	4146	4971	0	20
P-0049524-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49437289	49446994	Intron of KMT2D(-):78bp before exon 24	Exon 7 of KMT2D(-)		GRCh37	DELETION	10	50	Deletion within transcript : mid-exon	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.950_c.5468-78del	yes	unknown	9705	45394	37806	0	54
P-0031131-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49432027	49440571	Exon 34 of KMT2D(-)	Exon 15 of KMT2D(-)		GRCh37	DUPLICATION	10	19	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2D (NM_003482) Rearrangement: c.4239_c.9112dup	yes	unknown	8544	48933	66968	0	19
P-0044808-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49416375	49423229	Exon 51 of KMT2D(-)	Exon 43 of KMT2D(-)		GRCh37	DUPLICATION	10	160	Duplication within transcript : mid-exon	PRECISE	5to3	KMT2D (NM_003482) rearrangement: c.14030_c.16336dup	yes	unknown	6854	22588	41174	0	176
P-0026699-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433240	49434396	Exon 32 of KMT2D(-)	Exon 31 of KMT2D(-)		GRCh37	INVERSION	9	4	KMT2D-intragenic	PRECISE	3to3	KMT2D (NM_003482):c.8207_c.7157inv.	yes	unknown	1156	9419	21841	0	4
P-0032068-T01-IM6	SOMATIC	KMT2D	TRHDE-AS1	12	12	49432495	72507173	Exon 34 of KMT2D(-)	IGR: 140Kb before TRHDE-AS1(-)		GRCh37	INVERSION	10	12	KMT2D-intragenic	PRECISE	5to5	KMT2D (NM_003482) Rearrangement: c.8644:KMT2D_chr12:g.72507173inv	yes	unknown	23074678	191931	241731	0	13
P-0042854-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49424136	49442184	Exon 42 of KMT2D(-)	Intron of KMT2D(-):257bp after exon 13		GRCh37	INVERSION	10	5	KMT2D-intragenic	PRECISE	3to3	KMT2D (NM_003482) rearrangement: c.4131+258_c.13926inv	yes	unknown	18048	128205	135625	0	5
P-0053948-T01-IM6	SOMATIC	KMT2D	EMBP1	12	1	49444841	121485193	Exon 10 of KMT2D(-)	IGR: 224Kb before EMBP1(+)		GRCh37	TRANSLOCATION	10	32	KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: t(1;12)(p11.2;q13.12)(chr1:g.121485193::chr12:g.49444841)	yes	unknown	0	0	0	0	37
P-0016807-T01-IM6	SOMATIC	KMT2D		16	12	9209176	49444705	Intron of C16orf72(+):1Kb before exon 4	Exon 10 of KMT2D(-)		GRCh37	TRANSLOCATION			KMT2D-intragenic	PRECISE	5to3	KMT2D (NM_003482) rearrangement: t(12;16)(q13.12;p13.2)(chr12:g.49444705::chr16:g.9209176)			0	0	0	0	24
P-0017932-T01-IM6	SOMATIC	KMT2D		12	12	49416107	49628359	Exon 52 of KMT2D(-)	IGR: 31Kb before TUBA1C(+)		GRCh37	DELETION			KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.16368:KMT2D_chr12:g.49628359del			212252	146204	205189	0	46
P-0018316-T01-IM6	SOMATIC	KMT2D		12	12	49442868	49530496	Intron of KMT2D(-):19bp after exon 12	IGR: 9Kb before TUBA1B(-)		GRCh37	DELETION			KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.4020+20:KMT2D_chr12:g.49530496del			87628	47677	29605	0	2
P-0021721-T01-IM6	SOMATIC	KMT2D		12	12	49421954	49476991	Intron of KMT2D(-):30bp before exon 46	IGR: 6Kb before DHH(-)		GRCh37	DELETION			KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: chr12:g.49421954_c.14383-30del			55037	148453	110820	0	8
P-0024631-T01-IM6	SOMATIC	KMT2D		12	12	49447056	52691392	Exon 7 of KMT2D(-)	IGR: 4Kb before KRT86(+)		GRCh37	INVERSION			KMT2D-intragenic	PRECISE	3to3	KMT2D (NM_003482) rearrangement: c.888_chr12:g.52691392inv			3244336	28550	43775	0	13
P-0024721-T01-IM6	SOMATIC	KMT2D		12	12	44815829	49436208	IGR: 86Kb before NELL2(-)	Intron of KMT2D(-):95bp before exon 28		GRCh37	DELETION			KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: chr12:g.44815829_c.5868-95:KMT2Ddel			4620379	127746	62906	0	17
P-0027350-T01-IM6	SOMATIC	KMT2D		13	12	98788781	49433473	IGR: 6Kb before FARP1(+)	Intron of KMT2D(-):33bp after exon 31		GRCh37	TRANSLOCATION			KMT2D-intragenic	PRECISE	5to3	KMT2D (NM_003482.3) rearrangement: t(12;13)(q13.12;q32.2)(chr12:g.49433473::chr13:g.98788781)			0	0	0	0	51
P-0038349-T01-IM6	SOMATIC	KMT2D		12	12	49439907	49478928	Exon 17 of KMT2D(-)	IGR: 4Kb before DHH(-)		GRCh37	INVERSION			KMT2D-intragenic	PRECISE	3to3	KMT2D (NM_003482) rearrangement: c.4634_chr12:g.49478928inv			39021	55639	40692	0	52
P-0049677-T01-IM6	SOMATIC	KMT2D		12	12	49443053	51463325	Intron of KMT2D(-):52bp before exon 12	Intron of CSRNP2(-):2Kb before exon 4		GRCh37	INVERSION			KMT2D-intragenic	PRECISE	3to3	KMT2D (NM_003482) rearrangement: c.3907-52:KMT2D_chr12:g.51463325inv			2020272	61751	72348	0	43
P-0056108-T01-IM6	SOMATIC	KMT2D		12	12	49426606	51176880	Exon 39 of KMT2D(-)	Intron of ATF1(+):3Kb after exon 2		GRCh37	DELETION			KMT2D-intragenic	PRECISE	3to5	KMT2D (NM_003482) rearrangement: c.11882:KMT2D_chr12:g.51176880del			1750274	125168	151117	0	74
P-0040340-T01-IM6	SOMATIC	KMT2D	ADCY6	12	12	49172607	49425393	Intron of ADCY6(-):567bp before exon 2	Exon 39 of KMT2D(-)		GRCh37	DELETION	10	11	Protein Fusion: mid-exon  {KMT2D:ADCY6}	PRECISE	3to5	KMT2D (NM_003482) - ADCY6 (NM_015270) rearrangement: c.13095:KMT2D_c.865-567:ADCY6del	yes	unknown	252786	38195	52745	0	11
P-0045626-T01-IM6	SOMATIC	KMT2D	RILPL1	12	12	49423208	123988479	Exon 43 of KMT2D(-)	Intron of RILPL1(-):4Kb before exon 3		GRCh37	DUPLICATION	10	15	Protein Fusion: mid-exon  {KMT2D:RILPL1}	PRECISE	5to3	KMT2D (NM_003482) - RILPL1 (NM_178314) rearrangement: c.14051:KMT2D_c.461-4396:RILPL1dup	yes	unknown	74565271	461105	402598	0	58
P-0022001-T01-IM6	SOMATIC	KMT2D	TMTC1	12	12	29920175	49434234	Intron of TMTC1(-):655bp after exon 2	Exon 31 of KMT2D(-)		GRCh37	DELETION	10	14	Protein Fusion: mid-exon  {KMT2D:TMTC1}	PRECISE	3to5	KMT2D (NM_003482) - TMTC1 (NM_001193451) rearrangement: c.7319:KMT2D_c.480+656:TMTC1del	yes	unknown	19514059	145357	272740	0	31
P-0025216-T01-IM6	SOMATIC	KMT2D	RHEBL1	12	12	49442520	49465010	Exon 13 of KMT2D(-)	Promoter of RHEBL1(-):7Kb from tx start		GRCh37	DELETION	10	11	Protein Fusion: mid-exon  {RHEBL1:KMT2D}	PRECISE	3to5	RHEBL1 (NM_144593) - KMT2D (NM_003482) rearrangement: c.-1442:RHEBL1_c.4053:KMT2Ddel	yes	unknown	22490	25515	32799	0	11
P-0018933-T01-IM6	SOMATIC	KMT2D	SYT1	12	12	49421101	79449220	Exon 48 of KMT2D(-)	5-UTR of SYT1(+):162Kb before coding start		GRCh37	INVERSION	10	21	Protein Fusion: mid-exon  {SYT1:KMT2D}	PRECISE	3to3	SYT1 (NM_001135806) - KMT2D (NM_003482) rearrangement: c.-18+8078:SYT1_c.14648:KMT2Dinv	yes	unknown	30028119	303305	456822	0	21
P-0037718-T01-IM6	SOMATIC	KMT2D	FAM149B1	12	10	49446311	74969560	Intron of KMT2D(-):35bp after exon 9	Intron of FAM149B1(+):448bp before exon 7		GRCh37	TRANSLOCATION	10	38	Protein Fusion: out of frame  {KMT2D:FAM149B1}	PRECISE	5to5	KMT2D (NM_003482) - FAM149B1 (NM_173348) rearrangement: t(10;12)(q22.2;q13.12)(chr10:g.74969560::chr12:g.49446311)	yes	unknown	0	0	0	0	41
P-0054359-T01-IM6	SOMATIC	KNSTRN	KNSTRN	15	15	38995156	40678466	Promoter of C15orf53(+):6Kb from tx start	Intron of KNSTRN(+):96bp before exon 3		GRCh37	DELETION	10	23	Transcript Fusion {C15orf53:KNSTRN}	PRECISE	3to5	KNSTRN (NM_033286) rearrangement: c.305-97:KNSTRN_chr15:g.38995156del	yes	unknown	1683310	7394	7931	0	24
P-0075744-T01-IM7	SOMATIC	KRAS	KRAS	12	12	25393856	25398267	Intron of KRAS(-):4Kb after exon 2	Exon 2 of KRAS(-)		GRCh37	DUPLICATION	10	23	Duplication within transcript : mid-exon	PRECISE	5to3	KRAS (NM_033360) rearrangement: c.52_c.111+4352dup	yes	unknown	4411	350	732	0	23
P-0015078-T01-IM6	SOMATIC	KRAS	KRAS	12	12	25380191	25463932	Exon 3 of KRAS(-)	IGR: 60Kb after KRAS(-)		GRCh37	DUPLICATION	40	34	KRAS-intragenic	PRECISE	5to3	KRAS (NM_033360) rearrangement: chr12:g.25463932_c.267dup	yes	unknown	83741	2686	3628	0	34
P-0037343-T01-IM6	SOMATIC	KRAS		12	2	25398156	56012815	Intron of KRAS(-):51bp after exon 2	IGR: 80Kb before EFEMP1(-)		GRCh37	TRANSLOCATION			KRAS-intragenic	PRECISE	5to3	KRAS (NM_033360) rearrangement: t(2;12)(p16.q;p12.1)(chr2:g.56012815::chr12:g.25398156)			0	0	0	0	51
P-0038166-T01-IM6	SOMATIC	KREMEN1	CHEK2	22	22	29108034	29491205	Intron of CHEK2(-):29bp before exon 6	Intron of KREMEN1(+):797bp after exon 2		GRCh37	INVERSION	10	6	Protein Fusion: in frame  {KREMEN1:CHEK2}	PRECISE	3to3	KREMEN1 (NM_032045) - CHEK2 (NM_007194) rearrangement: c.260+797:KREMEN1_c.684-29:CHEK2inv	yes	unknown	383171	9382	11492	0	6
P-0049917-T01-IM6	SOMATIC	KREMEN1	EWSR1	22	22	29480309	29686863	Intron of KREMEN1(+):10Kb before exon 2	Intron of EWSR1(+):690bp before exon 10		GRCh37	DELETION	10	43	Protein Fusion: out of frame  {KREMEN1:EWSR1}	PRECISE	3to5	KREMEN1 (NM_032045) - EWSR1 (NM_013986) rearrangement: c.98-9937:KREMEN1_c.993-691:EWSR1del	yes	unknown	206554	24358	27866	0	46
P-0020678-T01-IM6	SOMATIC	KRT6A	NAB2	12	12	52882906	57486817	Intron of KRT6A(-):574bp before exon 7	Intron of NAB2(+):28bp before exon 5		GRCh37	INVERSION	10	57	Protein Fusion: in frame  {KRT6A:NAB2}	PRECISE	5to5	KRT6A (NM_005554) - NAB2 (NM_005967) rearrangement: c.1204-574:KRT6A_c.1144-29:NAB2inv	yes	unknown	4603911	70316	108699	0	82
P-0025396-T02-IM6	SOMATIC	KSR1	NF1	17	17	25912019	29557697	Intron of KSR1(+):2Kb after exon 5	Intron of NF1(+):162bp before exon 24		GRCh37	DELETION	10	14	Protein Fusion: out of frame  {KSR1:NF1}	PRECISE	3to5	KSR1 (NM_014238) - NF1 (NM_001042492) rearrangement: c.570-664:KSR1_c.3114-163:NF1del	yes	unknown	3645678	33960	28144	0	17
P-0078906-T01-IM7	SOMATIC	L3MBTL2	EP300	22	22	41558733	41624764	Exon 21 of EP300(+)	Intron of L3MBTL2(+):779bp before exon 16		GRCh37	DUPLICATION	6	4	Protein Fusion: mid-exon  {L3MBTL2:EP300}	PRECISE	5to3	L3MBTL2 (NM_031488) - EP300 (NM_001429) rearrangement: c.1889-780:L3MBTL2_c.3678:EP300dup	yes	unknown	66031	24990	51283	0	5
P-0037022-T01-IM6	SOMATIC	LACE1	ROS1	6	6	108749238	117660863	Intron of LACE1(+):19Kb before exon 8	Intron of ROS1(-):1Kb after exon 30		GRCh37	INVERSION			Protein Fusion: in frame  {LACE1:ROS1}	PRECISE	3to3	LACE1 (NM_145315) - ROS1 (NM_002944) rearrangement: c.808-19179:LACE1_c.5079+1435:ROS1inv			8911625	171434	201457	0	4
P-0024083-T01-IM6	SOMATIC	LAMA4	ESR1	6	6	112437814	152163649	Intron of LAMA4(-):618bp before exon 36	Intron of ESR1(+):82bp before exon 3		GRCh37	INVERSION	10	35	Protein Fusion: out of frame  {LAMA4:ESR1}	PRECISE	5to5	LAMA4 (NM_001105206) - ESR1 (NM_001122740) rearrangement: c.4982-618:LAMA4_c.453-83:ESR1inv	yes	unknown	39725835	274225	265914	0	36
P-0055990-T01-IM6	SOMATIC	LARP4B	RSPO2								GRCh37				LARP4B-RSPO2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: LARP4B-RSPO2 fusion. Note: The rearrangement is an in-frame fusion between genes LARP4B Exon1 (NM_015155) and RSPO2 Exon2 (NM_178565). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL:   TFG-GPR128 fusion.  Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID:19797732	yes	unknown					
P-0057586-T02-IM6	SOMATIC	LATS1	LATS1	6	6	128505468	150005042	Intron of PTPRK(-):108bp after exon 7	Exon 4 of LATS1(-)		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	5to5	LATS1 (NM_004690) rearrangement: c.1183:LATS1_chr6:g.128505468inv	yes	unknown	21499574	55613	91391	0	13
P-0082828-T02-IM7	SOMATIC	LATS1		6	2	150004249	10596475	Exon 4 of LATS1(-)	Promoter of LOC101929715(+):7Kb from tx start		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	LATS1 (NM_004690) rearrangement: t(2;6)(p25.1;q25.1)(chr2:g.10596475::chr6:g.150004249)			0	0	0	0	10
P-0001664-T01-IM3	SOMATIC	LATS1	LATS1	6	6	149983232	149990542	Exon 8 of LATS1(-)	Intron of LATS1(-): 7Kb after exon 7		GRCh37	DELETION	57	36	Deletion within transcript: mid-exon	PRECISE	3to5	LATS1 (NM_004690) intragenic deletion: c.3026_c.2883+6854del	yes	unknown	7310	851	569	0	46
P-0042155-T01-IM6	SOMATIC	LATS1	PCMT1	6	6	150005510	150119587	Exon 4 of LATS1(-)	Intron of PCMT1(+):2Kb after exon 6		GRCh37	DELETION	10	17	LATS1-intragenic	PRECISE	3to5	LATS1 (NM_004690) rearrangement: c.715:LATS1_chr6:g.150119587del	yes	unknown	114077	8453	6955	0	17
P-0063415-T01-IM7	SOMATIC	LATS1	IYD	6	6	149982915	150675765	Exon 8 of LATS1(-)	IGR: 14Kb before IYD(+)		GRCh37	INVERSION	10	26	LATS1-intragenic	PRECISE	5to5	LATS1 (NM_004690) rearrangement: c.3343:LATS1_chr6:g.150675765inv	yes	unknown	692850	18303	28541	0	27
P-0012400-T01-IM5	SOMATIC	LATS1	GLIS3	9	6	3858763	150001247	Intron of GLIS3(-): 3Kb before exon 9	Exon 5 of LATS1(-)		GRCh37	TRANSLOCATION	4	11	Protein fusion: mid-exon (LATS1-GLIS3)	PRECISE	3to5	LATS1 (NM_004690) - GLIS3 (NM_001042413) rearrangement: t(6;9)(q25.1;p24.2)(chr6:g.150001247::chr9:g.3858763)	yes	unknown	0	0	0	0	10
P-0017375-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21562176	21575164	Exon 4 of LATS2(-)	Intron of LATS2(-):10Kb before exon 3		GRCh37	DELETION	10	90	Deletion within transcript : mid-exon	PRECISE	3to5	LATS2 (NM_014572) rearrangement: c.1743_c.343-9621del	yes	unknown	12988	8774	8090	0	106
P-0074325-T02-IM7	SOMATIC	LATS2	LATS2	13	13	21557648	21567692	Exon 5 of LATS2(-)	Intron of LATS2(-):2Kb before exon 3		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	LATS2 (NM_014572) rearrangement: c.343-2149_c.2197del	yes	unknown	10044	6346	5561	0	23
P-0022716-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21548109	21562357	3-UTR of LATS2(-):899bp after coding stop	Exon 4 of LATS2(-)		GRCh37	DELETION	10	12	LATS2-intragenic	PRECISE	3to5	LATS2 (NM_014572) rearrangement: c.1562_c.*900del	yes	unknown	14248	17269	22168	0	14
P-0059449-T01-IM7	SOMATIC	LATS2		13	13	21504151	21562727	IGR: 9Kb before LINC00367(-)	Exon 4 of LATS2(-)		GRCh37	INVERSION			LATS2-intragenic	PRECISE	5to5	LATS2 (NM_014572) rearrangement: c.1192:LATS2_chr13:g.21504151inv			58576	18108	19731	0	45
P-0004401-T01-IM5	SOMATIC	LATS2	ATP8A2	13	13	21549524	25969823	Intron of LATS2(-): 21bp before exon 8	Intron of ATP8A2(+): 23Kb after exon 1		GRCh37	INVERSION	20	10	Protein fusion: out of frame (ATP8A2-LATS2)	PRECISE	3to3	ATP8A2 (NM_016529) - LATS2( NM_01457) rearrangement: c.76+23397:ATP8A2_c.2773-21:LATS2inv	yes	unknown	4420299	23502	31553	0	9
P-0014624-T01-IM6	SOMATIC	LCP2	EPAS1	5	2	169707068	46588195	Intron of LCP2(-): 4Kb before exon 4	Exon 6 of EPAS1(+)		GRCh37	TRANSLOCATION	8	11	Protein fusion: mid-exon (LCP2-EPAS1)	PRECISE	5to5	LCP2 (NM_005565) - EPAS1(NM_001430) rearrangement: t(2;5)(p21;q35.1)(chr2:g.46588195::chr5:g.169707068)	yes	unknown	0	0	0	0	11
P-0004863-T01-IM5	SOMATIC	LDLR	SMARCA4	19	19	11150025	11218725	Intron of SMARCA4(+): 109bp before exon 30	Intron of LDLR(+): 535bp after exon 6		GRCh37	DUPLICATION	3	6	Protein fusion: out of frame (LDLR-SMARCA4)	PRECISE	5to3	LDLR (NM_000527)  - SMARCA4 (NM_003072) rearrangement : c.940+53:LDLR_c.4171-1958:SMARCA4dup	yes	unknown	68700	14957	14608	0	6
P-0003390-T01-IM5	SOMATIC	LEMD3	POLE	12	12	65574555	133225786	Intron of LEMD3(+): 10Kb after exon 1	Intron of POLE(-): 106bp after exon 31		GRCh37	INVERSION	3	5	Protein fusion: out of frame (POLE-LEMD3)	PRECISE	5to5		yes	unknown	67651231	153006	169339	0	5
P-0014090-T01-IM5	SOMATIC	LGALS13		19	1	40096336	16257974	Intron of LGALS13(+): 308bp after exon 3	Exon 11 of SPEN(+)		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (LGALS13-SPEN)	PRECISE	3to5	LGALS13 (NM_013268) SPEN (NM_015001) rearrangement: t(1;19)(p36.13;q13.2)(chr1:g.16257974::chr19:g.40096336)			0	0	0	0	19
P-0045531-T01-IM6	SOMATIC	LGR5	NAB2	12	12	57488458	71910494	Exon 7 of NAB2(+)	Intron of LGR5(+):8Kb before exon 3		GRCh37	DUPLICATION	10	35	Protein Fusion: mid-exon  {LGR5:NAB2}	PRECISE	5to3	LGR5 (NM_003667) - NAB2 (NM_005967) rearrangement: c.285-7692:LGR5_c.1532:NAB2dup	yes	unknown	14422036	54085	64626	0	35
P-0070624-T01-IM7	SOMATIC	LHFP	RB1	13	13	40053186	49050883	Intron of LHFP(-):101Kb before exon 3	Exon 25 of RB1(+)		GRCh37	INVERSION	10	9	Protein Fusion: mid-exon  {LHFP:RB1}	PRECISE	5to5	LHFP (NM_005780) - RB1 (NM_000321) rearrangement: c.386-100523:LHFP_c.2567:RB1inv	yes	unknown	8997697	48263	54373	0	9
P-0059163-T01-IM7	SOMATIC	LIN9	PARP1	1	1	226487209	226556167	Intron of LIN9(-):2Kb after exon 2	Intron of PARP1(-):145bp before exon 16		GRCh37	DUPLICATION	9	7	Protein Fusion: out of frame  {LIN9:PARP1}	PRECISE	5to3	LIN9 (NM_173083) - PARP1 (NM_001618) rearrangement: c.112+1665:LIN9_c.2155-145:PARP1dup	yes	unknown	68958	9772	18371	0	10
P-0026689-T01-IM6	SOMATIC	LINC00578	TP63	3	3	177279698	189526031	5-UTR of LINC00578(+):191Kb before coding start	Intron of TP63(+):29bp before exon 4		GRCh37	DELETION	10	36	Transcript Fusion {LINC00578:TP63}	PRECISE	3to5	TP63 (NM_003722):c.325-30del_g.177279698	yes	unknown	12246333	101914	168318	0	38
P-0059760-T01-IM7	SOMATIC	LMF1	TRAF7	16	16	1013919	2225698	Intron of LMF1(-):7Kb after exon 1	Intron of TRAF7(+):75bp after exon 17		GRCh37	INVERSION	10	26	Protein Fusion: out of frame  {LMF1:TRAF7}	PRECISE	5to5	LMF1 (NM_022773) - TRAF7 (NM_032271) rearrangement: c.193+6869:LMF1_c.1626+75:TRAF7inv	yes	unknown	1211779	94479	98667	0	27
P-0023994-T01-IM6	SOMATIC	LMNA	NTRK1								GRCh37				LMNA-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: LMNA-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes LMNA Exon10 (NM_170707) and NTRK1 Exon11 (NM_002529).	yes	unknown					
P-0046560-T01-IM6	SOMATIC	LMNA	NTRK1								GRCh37				LMNA-NTRK1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: LMNA-NTRK1 fusion. Note: The rearrangement is an out of frame fusion between genes LMNA Exon12 (NM_170707) and NTRK1 Exon12 (NM_002529).	yes	unknown					
P-0013121-T02-IM5	SOMATIC	LMNA	NTRK1	1	1	156109782	156845185	3-UTR of LMNA(+): 885bp after coding stop	Intron of NTRK1(+): 127bp before exon 12		GRCh37	DELETION	141	101	NTRK1-LMNA fusion	PRECISE	3to5	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.*885:LMNA_c.1355-127:NTRK1del	yes	unknown	735403	66596	43434	0	157
P-0023994-T01-IM6	SOMATIC	LMNA	NTRK1	1	1	156107917	156844525	Intron of LMNA(+):361bp before exon 10	Intron of NTRK1(+):107bp after exon 10		GRCh37	DELETION	10	11	Protein Fusion: in frame  {LMNA:NTRK1}	PRECISE	3to5	LMNA (NM_170707) - NTRK1 (NM_002529) fusion (LMNA exons 1-10 fused to NTRK1 exons 11-17): c.1699-362:LMNA_c.1251+107:NTRK1del	yes	unknown	736608	61162	66562	0	11
P-0010581-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156103383	156844556	Intron of LMNA(+): 811bp before exon 3	Intron of NTRK1(+): 138bp after exon 10		GRCh37	DELETION	46	25	Protein fusion: in frame (LMNA-NTRK1)	PRECISE	3to5	LMNA (NM_170707) - NTRK (NM_002529) fusion (LMNA exons 1-2 fused to NTRK1 exons 11-17): c.514-811:LMNA_c.1251+138:NTRK1del	yes	unknown	741173	31182	27534	0	13
P-0007739-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156106774	156845035	Exon 8 of LMNA(+)	Intron of NTRK1(+): 235bp after exon 11		GRCh37	DELETION	47	6	Protein fusion: mid-exon (LMNA-NTRK1)	PRECISE	3to5	LMNA (NM_170707) - NTRK1 (NM_002529) Fusion (LMNA exons 1-8 fused to NTRK1 exons 12-17):  c.1443:LMNA_c.1354+235:NTRK1	yes	unknown	738261	31201	18575	0	6
P-0042990-T01-IM6	SOMATIC	LPA	HIST1H3H	6	6	27777879	161071099	Exon 1 of HIST1H3H(+)	Intron of LPA(-):270bp after exon 3		GRCh37	INVERSION	10	17	Protein Fusion: mid-exon  {LPA:HIST1H3H}	PRECISE	5to5	LPA (NM_005577) - HIST1H3H (NM_003536) rearrangement: c.209+271:LPA_c.28:HIST1H3Hinv	yes	unknown	133293220	949840	1048576	0	26
P-0027047-T01-IM6	SOMATIC	LPCAT3	FGFR1	12	8	7127535	38282317	Promoter of LPCAT3(-):42Kb from tx start	Intron of FGFR1(-):100bp before exon 8		GRCh37	TRANSLOCATION	10	29	Transcript Fusion {LPCAT3:FGFR1}	PRECISE	5to3	LPCAT3 (NM_005768.5) - FGFR1(NM_001174067) rearrangement: t(8;12)(p11.23;p13.31)(chr8:g.38282317::chr12:g.7127535)	yes	unknown	0	0	0	0	42
P-0031006-T01-IM6	SOMATIC	LPHN3	ETV6								GRCh37				LPHN3-ETV6 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: LPHN3-ETV6 fusion. Note: The rearrangement is an in-frame fusion between genes LPHN3 Exon6 (NM_015236) and ETV6 Exon3 (NM_001987).	yes	unknown					
P-0025683-T01-IM6	SOMATIC	LPO	HOXB13	17	17	46805585	56331549	Exon 1 of HOXB13(-)	Intron of LPO(+):622bp before exon 9		GRCh37	INVERSION			Protein Fusion: mid-exon  {LPO:HOXB13}	IMPPRECISE	3to3	LPO (NM_006151) - HOXB13 (NM_006361) rearrangement: c.1106-623:LPO_c.371:HOXB13inv			9525964	37532	39684	0	22
P-0047833-T02-IM6	SOMATIC	LRBA	BRAF								GRCh37				LRBA-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: LRBA-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes LRBA Exon41 (NM_006726) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0047833-T02-IM6	SOMATIC	LRBA	BRAF	7	4	140493444	151502269	Intron of BRAF(-):663bp after exon 8	Intron of LRBA(-):7Kb after exon 40		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {LRBA:BRAF}	PRECISE	3to5	LRBA (NM_001199282) - BRAF (NM_004333) fusion: t(4;7)(q31.3;q34)(chr4:g.151502269::chr7:g.140493444)			0	0	0	0	134
P-0023007-T01-IM6	SOMATIC	LRIG3	ROS1	12	6	59270940	117645256	Intron of LRIG3(-):241bp after exon 15	Intron of ROS1(-):238bp after exon 34		GRCh37	TRANSLOCATION	0	16	Protein Fusion: in frame  {LRIG3:ROS1}	IMPPRECISE	5to3	LRIG3 (NM_153377) - ROS1 (NM_002944) fusion: (LRIG3 exons 1-15 fused to ROS1 exons 35 - 43): t(6;12)(q22.1;q14.1)(chr6:g.117645256::chr12:g.59270940)	yes	unknown	0	0	0	0	14
P-0068483-T01-IM7	SOMATIC	LRIG3	ROS1	12	6	59269495	117644742	Intron of LRIG3(-):731bp after exon 16	Intron of ROS1(-):752bp after exon 34		GRCh37	TRANSLOCATION	10	41	Protein Fusion: in frame  {LRIG3:ROS1}	PRECISE	5to3	LRIG3 (NM_153377) - ROS1 (NM_002944) fusion: t(6;12)(q22.1;q14.1)(chr6:g.117644742::chr12:g.59269495)	yes	unknown	0	0	0	0	49
P-0058847-T01-IM7	SOMATIC	LRP1	NAB2	12	12	57486722	57575759	Exon 4 of NAB2(+)	Intron of LRP1(+):685bp after exon 34		GRCh37	DUPLICATION	0	10	Protein Fusion: mid-exon  {LRP1:NAB2}	IMPPRECISE	5to3	LRP1 (NM_002332) - NAB2 (NM_005967) rearrangement: c.5662+685:LRP1_c.1114:NAB2dup	yes	unknown	89037	13409	36020	0	10
P-0029945-T01-IM6	SOMATIC	LRRC75A	RARA	17	17	16382458	38511428	Intron of LRRC75A(-):13Kb after exon 1	Intron of RARA(+):86bp before exon 8		GRCh37	INVERSION	10	5	Protein Fusion: out of frame  {LRRC75A:RARA}	PRECISE	5to5	FAM211A (NM_001113567) - RARA (NM_000964) rearrangement: c.246+12601:FAM211A_c.1013-87:RARAinv	yes	unknown	22128970	242759	289625	0	6
P-0018242-T01-IM6	SOMATIC	LRRC8B	CSDE1	1	1	90028558	115277117	5-UTR of LRRC8B(+):20Kb before coding start	Exon 8 of CSDE1(-)		GRCh37	DELETION	10	8	Antisense Fusion	PRECISE	3to5	CSDE1 (NM_001242891) rearrangement:  c.666:CSDE1_chr1:g.90028558del	yes	unknown	25248559	42352	62416	0	9
P-0065904-T01-IM7	SOMATIC	LRRFIP1	PIK3R1	5	2	67589413	238659630	Intron of PIK3R1(+):102bp after exon 10	Intron of LRRFIP1(+):2Kb after exon 4		GRCh37	TRANSLOCATION	0	5	Protein Fusion: in frame  {LRRFIP1:PIK3R1}	IMPPRECISE	5to3	LRRFIP1 (NM_001137552) - PIK3R1 (NM_181523) rearrangement: t(2;5)(q37.3;q13.1)(chr2:g.238659630::chr5:g.67589413)	yes	unknown	0	0	0	0	5
P-0063354-T02-IM7	SOMATIC	LTA4H	ARID1A	12	1	96426268	27101098	Intron of LTA4H(-):3Kb before exon 2	Exon 18 of ARID1A(+)		GRCh37	TRANSLOCATION	10	15	Protein Fusion: mid-exon  {LTA4H:ARID1A}	PRECISE	5to5	LTA4H (NM_000895) - ARID1A (NM_006015) rearrangement: t(1;12)(p36.11;q23.1)(chr1:g.27101098::chr12:g.96426268)	yes	unknown	0	0	0	0	16
P-0006412-T01-IM5	SOMATIC	LUC7L2	BRAF	7	7	139100194	140501109	Intron of LUC7L2(+): 2Kb before exon 9	Intron of BRAF(-): 103bp after exon 6		GRCh37	DELETION	29	20	Antisense fusion	PRECISE	3to5	LUC7L2 (NM_001244584) - BRAF (NM_004333) Rearrangement : c.1008-2090:LUC7L2_c.860+103:BRAFdel	yes	unknown	1400915	164717	161211	0	15
P-0080175-T01-IM7	SOMATIC	LYN		8	8	55854303	56864510	IGR: 161Kb before XKR4(+)	Intron of LYN(+):14bp before exon 7		GRCh37	INVERSION	10	256	LYN-intragenic	PRECISE	5to5	LYN (NM_002350) rearrangement: c.488-15:LYN_chr8:g.55854303inv	yes	unknown	1010207	10343	29467	0	352
P-0029294-T01-IM6	SOMATIC	LYN		8	8	56911877	57070090	Intron of LYN(+):99bp before exon 12	IGR: 3Kb before PLAG1(-)		GRCh37	INVERSION			LYN-intragenic	PRECISE	5to5	LYN (NM_002350) rearrangement: c.1205-100:LYN_chr8:g.57070090inv			158213	4484	4809	0	16
P-0057593-T02-IM7	SOMATIC	LYN	COL25A1	8	4	56879468	109927525	Intron of LYN(+):12bp after exon 9	Intron of COL25A1(-):4Kb after exon 5		GRCh37	TRANSLOCATION	10	33	Protein Fusion: out of frame  {LYN:COL25A1}	PRECISE	3to3	LYN (NM_002350) - COL25A1 (NM_198721) rearrangement: t(4;8)(q25;q12.1)(chr4:g.109927525::chr8:g.56879468)	yes	unknown	0	0	0	0	33
P-0073920-T02-IM7	SOMATIC	LZTR1	LZTR1	22	22	21342832	21351039	Intron of LZTR1(+):245bp before exon 6	Exon 19 of LZTR1(+)		GRCh37	INVERSION	10	117	Antisense Fusion	PRECISE	3to3	LZTR1 (NM_006767) rearrangement: c.510-246_c.2274inv	yes	unknown	8207	27232	33836	0	117
P-0039853-T01-IM6	SOMATIC	LZTR1	CRKL	22	22	21288130	21341623	Exon 2 of CRKL(+)	Intron of LZTR1(+):169bp before exon 4		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {LZTR1:CRKL}	PRECISE	5to3	LZTR1 (NM_006767) - CRKL (NM_005207) rearrangement: c.321-170:LZTR1_c.375:CRKLdup			53493	7310	12506	0	8
P-0052363-T01-IM6	SOMATIC	MACF1	MTOR	1	1	11175034	39949500	Intron of MTOR(-):90bp before exon 52	Intron of MACF1(+):772bp before exon 92		GRCh37	INVERSION	10	23	Protein Fusion: in frame  {MACF1:MTOR}	PRECISE	3to3	MACF1 (NM_012090) - MTOR (NM_004958) rearrangement: c.15907-773:MACF1_c.7090-90:MTORinv	yes	unknown	28774466	527297	438000	0	23
P-0049188-T01-IM6	SOMATIC	MAD1L1	TMPRSS2	21	7	42874884	2217379	Intron of TMPRSS2(-):5Kb before exon 2	Intron of MAD1L1(-):29Kb before exon 11		GRCh37	TRANSLOCATION	10	56	Protein Fusion: out of frame  {MAD1L1:TMPRSS2}	PRECISE	3to5	MAD1L1 (NM_001013837) - TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p22.3;q22.3)(chr7:g.2217379::chr21:g.42874884)	yes	unknown	0	0	0	0	57
P-0015411-T01-IM6	SOMATIC	MAFB	PTPRT	20	20	39318393	41100912	Promoter of MAFB(-): 517bp from tx start	Exon 8 of PTPRT(-)		GRCh37	INVERSION	21	8	Antisense fusion	PRECISE	5to5	PTPRT (NM_133170) Rearrangement : c.1444:PTPRT_c.-903:MAFBinv	yes	unknown	1782519	41752	50065	0	8
P-0049278-T01-IM7	SOMATIC	MALT1	MALT1	18	18	55822125	56415026	Intron of NEDD4L(+):11Kb before exon 2	Exon 17 of MALT1(+)		GRCh37	INVERSION	10	35	Antisense Fusion	PRECISE	3to3	MALT1 (NM_006785) rearrangement: c.2427:MALT1_chr18:g.55822125inv	yes	unknown	592901	24280	19524	0	34
P-0079771-T01-IM7	SOMATIC	MALT1	MALT1	18	18	56390397	56392045	Exon 10 of MALT1(+)	Intron of MALT1(+):2Kb after exon 10		GRCh37	DELETION	10	20	Deletion within transcript : mid-exon	PRECISE	3to5	MALT1 (NM_006785) rearrangement: c.1136_c.1222+1562del	yes	unknown	1648	571	1118	0	23
P-0057586-T02-IM6	SOMATIC	MALT1	ZNF532	18	18	56402511	56435191	Exon 13 of MALT1(+)	IGR: 95Kb before ZNF532(+)		GRCh37	INVERSION	9	2	MALT1-intragenic	PRECISE	3to3	MALT1 (NM_006785) rearrangement: c.1553:MALT1_chr18:g.56435191inv	yes	unknown	32680	4964	7959	0	2
P-0063290-T01-IM7	SOMATIC	MALT1	MALT1	18	18	54972290	56339008	IGR: 47Kb before ST8SIA3(+)	Exon 1 of MALT1(+)		GRCh37	DELETION	10	10	MALT1-intragenic	PRECISE	3to5	MALT1 (NM_006785) rearrangement: c.133:MALT1_chr18:g.54972290del	yes	unknown	1366718	4875	6566	0	10
P-0016226-T01-IM6	SOMATIC	MALT1		18	18	26544483	56363790	IGR: 1Mb before CDH2(-)	Intron of MALT1(+):71bp after exon 3		GRCh37	DUPLICATION			MALT1-intragenic	PRECISE	5to3	MALT1 (NM_006785) rearrangement: g.26544483_c.498+71:MALT1del			29819307	50356	98008	0	26
P-0077385-T01-IM7	SOMATIC	MAN1B1	TRAF2	9	9	139794874	139990868	Exon 4 of TRAF2(+)	Intron of MAN1B1(+):25bp after exon 4		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {MAN1B1:TRAF2}	PRECISE	5to3	MAN1B1 (NM_016219) - TRAF2 (NM_021138) rearrangement: c.620+25:MAN1B1_c.268:TRAF2dup			195994	12761	18672	0	21
P-0036594-T01-IM6	SOMATIC	MAN1C1	ARID1A	1	1	26047118	27099884	Intron of MAN1C1(+):26Kb before exon 3	Exon 15 of ARID1A(+)		GRCh37	DUPLICATION	10	38	Protein Fusion: mid-exon  {ARID1A:MAN1C1}	PRECISE	5to3	ARID1A (NM_006015) - MAN1C1 (NM_020379) Rearrangement: c.3763:ARID1A_c.638-26041:MAN1C1dup	yes	unknown	1052766	26678	42184	0	42
P-0039939-T01-IM6	SOMATIC	MAOB	KDM6A	X	X	43668660	44920522	Intron of MAOB(-):6Kb before exon 4	Intron of KDM6A(+):46bp before exon 14		GRCh37	INVERSION	10	8	Protein Fusion: in frame  {MAOB:KDM6A}	PRECISE	5to5	MAOB (NM_000898) - KDM6A (NM_021140) rearrangement: c.280-6009:MAOB_c.1330-47:KDM6Ainv	yes	unknown	1251862	8327	7206	0	9
P-0064523-T03-IM7	SOMATIC	MAP2K1	MAP2K1	15	15	66781473	66782007	Intron of MAP2K1(+):79bp before exon 9	Intron of MAP2K1(+):48bp before exon 10		GRCh37	DELETION	0	10	Deletion of 1 exon : out of frame	IMPPRECISE	3to5	MAP2K1 (NM_002755) rearrangement: c.961-80_c.1023-49del	yes	unknown	534	1482	1418	0	12
P-0038195-T01-IM6	SOMATIC	MAP2K1	MAP2K1	15	15	50987680	66774180	IGR: 12Kb before SPPL2A(-)	Exon 6 of MAP2K1(+)		GRCh37	INVERSION	5	2	MAP2K1-intragenic	PRECISE	3to3	MAP2K1 (NM_002755) rearrangement: c.656:MAP2K1_chr15:g.50987680inv	yes	unknown	15786500	25637	29414	0	2
P-0077618-T01-IM7	SOMATIC	MAP2K1	MAP2K1	15	15	66635200	66736915	Intron of TIPIN(-):2Kb before exon 7	Intron of MAP2K1(+):78bp before exon 5		GRCh37	DELETION	10	12	MAP2K1-intragenic	PRECISE	3to5	MAP2K1 (NM_002755) rearrangement: c.517-79:MAP2K1_chr15:g.66635200del	yes	unknown	101715	6760	9461	0	13
P-0028897-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	4094324	4095377	Intron of MAP2K2(-):126bp after exon 10	Intron of MAP2K2(-):8bp after exon 9		GRCh37	INVERSION	6	3	Antisense Fusion	PRECISE	5to5	MAP2K2 (NM_030662) rearrangement: c.1092+127_c.1046+9inv	yes	unknown	1053	1902	2701	0	4
P-0067849-T01-IM7	SOMATIC	MAP2K2	MAP2K2	20	19	24501627	4095434	5-UTR of SYNDIG1(+):22Kb before coding start	Exon 9 of MAP2K2(-)		GRCh37	TRANSLOCATION	10	20	Antisense Fusion	PRECISE	3to5	MAP2K2 (NM_030662) rearrangement: t(19;20)(p13.3;p11.21)(chr19:g.4095434::chr20:g.24501627)	yes	unknown	0	0	0	0	20
P-0082828-T02-IM7	SOMATIC	MAP2K2		19	19	4117378	13566241	Intron of MAP2K2(-):38bp after exon 2	Intron of CACNA1A(-):215bp before exon 2		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	MAP2K2 (NM_030662) rearrangement: c.303+39:MAP2K2_chr19:g.13566241inv			9448863	382609	539582	0	27
P-0060860-T01-IM7	SOMATIC	MAP2K2	CREB3L3	19	19	4123753	4160504	Intron of MAP2K2(-):27bp after exon 1	Intron of CREB3L3(+):725bp after exon 4		GRCh37	DELETION	10	20	MAP2K2-intragenic	PRECISE	3to5	MAP2K2 (NM_030662) rearrangement: c.92+28:MAP2K2_chr19:g.4160504del	yes	unknown	36751	1129	1073	0	23
P-0032802-T01-IM6	SOMATIC	MAP2K2	CHAF1A	19	19	4117593	4418675	Exon 2 of MAP2K2(-)	Intron of CHAF1A(+):602bp after exon 4		GRCh37	INVERSION	10	14	Protein Fusion: mid-exon  {CHAF1A:MAP2K2}	PRECISE	3to3	CHAF1A (NM_005483) - MAP2K2 (NM_030662) fusion (CHAF1A exons 1-4 fused to MAP2K2 exons 2-11): c.1017+602:CHAF1A_c.127:MAP2K2 inv	yes	unknown	301082	1221	2238	0	38
P-0068292-T02-IM7	SOMATIC	MAP2K2	ARHGEF18	19	19	4123782	7469108	Exon 1 of MAP2K2(-)	5-UTR of ARHGEF18(+):36Kb before coding start		GRCh37	INVERSION	10	8	Protein Fusion: mid-exon  {MAP2K2:ARHGEF18}	PRECISE	5to5	MAP2K2 (NM_030662) rearrangement: c.91:MAP2K2_chr19:g.7469108inv	yes	unknown	3345326	147489	230983	0	9
P-0051840-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	3182837	4101072	Promoter of S1PR4(+):4Kb from tx start	Exon 6 of MAP2K2(-)		GRCh37	INVERSION	7	3	Protein Fusion: mid-exon  {S1PR4:MAP2K2}	PRECISE	3to3	MAP2K2 (NM_030662) rearrangement: c.650:MAP2K2_chr19:g.3182837inv	yes	unknown	918235	12720	11478	0	3
P-0018979-T01-IM6	SOMATIC	MAP2K2	DNM2	19	19	4101322	10861707	Intron of MAP2K2(-):44bp before exon 5	Intron of DNM2(+):9Kb before exon 2		GRCh37	INVERSION	10	5	Protein Fusion: out of frame  {DNM2:MAP2K2}	PRECISE	3to3	DNM2 (NM_001005361) - MAP2K2 (NM_030662) rearrangement: c.162-8707:DNM2_c.529-44:MAP2K2inv	yes	unknown	6760385	226912	245902	0	5
P-0014785-T01-IM6	SOMATIC	MAP2K2	CHAF1A	19	19	4097217	4403609	Intron of MAP2K2(-): 60bp after exon 8	Intron of CHAF1A(+): 798bp after exon 1		GRCh37	INVERSION	42	60	Protein fusion: out of frame (MAP2K2-CHAF1A)	PRECISE	5to5	MAP2K2 (NM_030662) -  CHAF1A (NM_005483) Rearrangement : c.984+60:MAP2K2_c.52+798:CHAF1Ainv	yes	unknown	306392	20357	17381	0	57
P-0029328-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11940850	11984775	Intron of MAP2K4(+):17Kb after exon 1	Exon 3 of MAP2K4(+)		GRCh37	DELETION	10	26	Deletion within transcript : mid-exon	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.115+16532_c.321del	yes	unknown	43925	2334	2776	0	27
P-0036247-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12038726	12043175	Intron of MAP2K4(+):4Kb before exon 10	Exon 10 of MAP2K4(+)		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.1041-4430_c.1060del	yes	unknown	4449	229	59	0	17
P-0059047-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12013221	12032597	Intron of MAP2K4(+):470bp before exon 6	Exon 9 of MAP2K4(+)		GRCh37	DELETION	10	25	Deletion within transcript : mid-exon	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.634-471_c.1033del	yes	unknown	19376	4615	3060	0	26
P-0063379-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12016567	12019393	Exon 7 of MAP2K4(+)	Intron of MAP2K4(+):3Kb after exon 7		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.703_c.813+2716del	yes	unknown	2826	1061	632	0	21
P-0081403-T02-IM7	SOMATIC	MAP2K4		17	17	11984677	11987430	Exon 3 of MAP2K4(+)	Intron of MAP2K4(+):3Kb after exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.223_c.393+2583del			2753	997	1027	0	7
P-0050123-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11985046	12016860	Intron of MAP2K4(+):199bp after exon 3	Intron of MAP2K4(+):183bp after exon 7		GRCh37	DUPLICATION	9	17	Duplication of 4 exons : in frame	PRECISE	5to3	MAP2K4 (NM_003010) rearrangement: c.393+199_c.813+183dup	yes	unknown	31814	3870	5562	0	16
P-0026838-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12001640	12016423	Intron of MAP2K4(+):3Kb after exon 4	Intron of MAP2K4(+):126bp before exon 7		GRCh37	INVERSION	8	2	MAP2K4-intragenic	PRECISE	5to5	MAP2K4 (NM_003010): c.513+2629_c.686-127inv	yes	unknown	14783	1665	2601	0	5
P-0051254-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11300923	11972819	Intron of SHISA6(+):18Kb after exon 3	Intron of MAP2K4(+):12Kb before exon 3		GRCh37	INVERSION	6	4	MAP2K4-intragenic	PRECISE	5to5	MAP2K4 (NM_003010) rearrangement: c.219-11854:MAP2K4_chr17:g.11300923inv	yes	unknown	671896	2660	3151	0	4
P-0052142-T02-IM6	SOMATIC	MAP2K4	MIR744	17	17	11973178	12060008	Intron of MAP2K4(+):11Kb before exon 3	IGR: 75Kb before MIR744(+)		GRCh37	DELETION	10	112	MAP2K4-intragenic	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.219-11495:MAP2K4_chr17:g.12060008del	yes	unknown	86830	8483	6707	1	121
P-0051779-T01-IM6	SOMATIC	MAP2K4	VMP1	17	17	12043081	57848901	Intron of MAP2K4(+):74bp before exon 10	Intron of VMP1(+):2Kb before exon 7		GRCh37	INVERSION	0	6	MAP2K4-intragenic	IMPPRECISE	5to5	MAP2K4 (NM_003010) rearrangement: c.1041-75:MAP2K4_chr17:g.57848901inv	yes	unknown	45805820	578701	755978	0	6
P-0060195-T01-IM7	SOMATIC	MAP2K4	MIR744	17	17	12043198	12145758	Exon 10 of MAP2K4(+)	IGR: 161Kb before MIR744(+)		GRCh37	DELETION	10	20	MAP2K4-intragenic	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.1083:MAP2K4_chr17:g.12145758del	yes	unknown	102560	1734	1419	0	20
P-0024178-T01-IM6	SOMATIC	MAP2K4		17	2	12028641	147903758	Exon 8 of MAP2K4(+)	IGR: 559Kb before PABPC1P2(+)		GRCh37	TRANSLOCATION			MAP2K4-intragenic	PRECISE	3to3	MAP2K4 (NM_003010) Rearrangement : t(2,17)(q23.1,p12)(chr2:g.147903758::chr17:g.12028641)			0	0	0	0	10
P-0064785-T01-IM7	SOMATIC	MAP2K4		17	17	12035522	12044653	Intron of MAP2K4(+):3Kb after exon 9	3-UTR of MAP2K4(+):120Kb after coding stop		GRCh37	INVERSION			MAP2K4-intragenic	PRECISE	3to3	MAP2K4 (NM_003010) rearrangement: c.1040+2918:MAP2K4_chr17:g.12044653inv			9131	1826	1182	1	18
P-0064885-T01-IM7	SOMATIC	MAP2K4		17	17	11924526	30030049	Intron of MAP2K4(+):208bp after exon 1	IGR: 128Kb before MIR365B(+)		GRCh37	DELETION			MAP2K4-intragenic	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.115+208:MAP2K4_chr17:g.30030049del			18105523	256983	318978	0	177
P-0082971-T01-IM7	SOMATIC	MAP2K4		17	17	11908119	12032538	IGR: 16Kb before MAP2K4(+)	Exon 9 of MAP2K4(+)		GRCh37	DELETION			MAP2K4-intragenic	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.974:MAP2K4_chr17:g.11908119del			124419	12970	13435	0	7
P-0015572-T01-IM6	SOMATIC	MAP2K4	FASN	17	17	12032518	80042668	Exon 9 of MAP2K4(+)	Intron of FASN(-): 7bp after exon 26		GRCh37	INVERSION	18	8	Protein fusion: mid-exon (MAP2K4-FASN)	PRECISE	3to3	MAP2K4 (NM_003010) - FASN (NM_004104) rearrangement: c.954:MAP2K4_c.4564+7:FASNinv	yes	unknown	68010150	772246	706665	0	7
P-0059871-T01-IM7	SOMATIC	MAP2K4	DNAH9	17	17	11644066	12016741	Intron of DNAH9(+):1Kb before exon 30	Intron of MAP2K4(+):64bp after exon 7		GRCh37	DUPLICATION	10	21	Protein Fusion: out of frame  {MAP2K4:DNAH9}	PRECISE	5to3	MAP2K4 (NM_003010) - DNAH9 (NM_001372) rearrangement: c.813+64:MAP2K4_c.5973-1426:DNAH9dup	yes	unknown	372675	13015	13815	0	22
P-0019957-T01-IM6	SOMATIC	MAP2K4	LINC00670	17	17	12043212	12465067	Intron of MAP2K4(+):11bp after exon 10	5-UTR of LINC00670(+):75Kb before coding start		GRCh37	DELETION	10	17	Transcript Fusion {MAP2K4:LINC00670}	PRECISE	3to5	MAP2K4 (NM_003010) rearrangement: c.1086+11_chr17:g.12465067del	yes	unknown	421855	1792	575	0	61
P-0018690-T01-IM6	SOMATIC	MAP3K1	SERINC5	5	5	56176622	79481066	Exon 12 of MAP3K1(+)	Intron of SERINC5(-):7Kb before exon 3		GRCh37	DELETION	10	23	Antisense Fusion	PRECISE	3to5	MAP3K1 (NM_005921) rearrangement: c.2172:MAP3K1_chr5:g.79481066del	yes	unknown	23304444	52609	51926	0	23
P-0038415-T01-IM6	SOMATIC	MAP3K1	MAP3K1	7	5	79055104	56184195	Intron of MAGI2(-):27Kb after exon 1	Intron of MAP3K1(+):11bp after exon 19		GRCh37	TRANSLOCATION	0	5	Antisense Fusion	IMPPRECISE	5to3	MAP3K1 (NM_005921) rearrangement: t(5,7)(q11.2;q21.11)(chr5:g.56184195::chr7:g.79055104)'	yes	unknown	0	0	0	0	5
P-0059355-T02-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56157413	56160781	Intron of MAP3K1(+):2Kb after exon 3	Intron of MAP3K1(+):20bp after exon 4		GRCh37	INVERSION	10	4	Antisense Fusion	PRECISE	3to3	MAP3K1 (NM_005921) rearrangement: c.834+1671_c.1035+20inv	yes	unknown	3368	2176	837	0	6
P-0076438-T01-IM7	SOMATIC	MAP3K1	MIER3	5	5	56189474	56228640	Exon 20 of MAP3K1(+)	Intron of MIER3(-):433bp after exon 8		GRCh37	DELETION	10	21	Antisense Fusion	PRECISE	3to5	MAP3K1 (NM_005921) rearrangement: c.4506:MAP3K1_chr5:g.56228640del	yes	unknown	39166	656	686	0	23
P-0068449-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56151011	56177270	Intron of MAP3K1(+):1Kb before exon 2	Intron of MAP3K1(+):126bp before exon 14		GRCh37	DELETION	10	3	Deletion of 12 exons : in frame	PRECISE	3to5	MAP3K1 (NM_005921) rearrangement: c.483-1416_c.2370-127del	yes	unknown	26259	14793	14718	0	3
P-0047996-T02-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56179279	56181031	Intron of MAP3K1(+):74bp before exon 15	Intron of MAP3K1(+):378bp after exon 16		GRCh37	DELETION	0	8	Deletion of 2 exons : out of frame	IMPPRECISE	3to5	MAP3K1 (NM_005921) rearrangement: c.3667-75_c.3982+378del	yes	unknown	1752	1409	1221	0	68
P-0031714-T01-IM6	SOMATIC	MAP3K1		5	5	56152265	56174836	Intron of MAP3K1(+):161bp before exon 2	Exon 11 of MAP3K1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	MAP3K1 (NM_005921) Rearrangement : c.483-162_c.1995del			22571	11012	11033	0	7
P-0068605-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56124056	56180879	Intron of MAP3K1(+):12Kb after exon 1	Intron of MAP3K1(+):226bp after exon 16		GRCh37	DUPLICATION	10	7	Duplication of 15 exons : out of frame	PRECISE	5to3	MAP3K1 (NM_005921) rearrangement: c.482+12174_c.3982+226dup	yes	unknown	56823	22164	46392	0	7
P-0017316-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56177814	56181387	Exon 14 of MAP3K1(+)	Intron of MAP3K1(+):371bp before exon 17		GRCh37	DUPLICATION	10	17	Duplication within transcript : mid-exon	PRECISE	5to3	MAP3K1 (NM_005921) Rearrangement :  c.2787_c.3983-372dup	yes	unknown	3573	5671	11617	0	18
P-0046261-T01-IM6	SOMATIC	MAP3K1	MAP3K1	12	5	4987480	56179537	IGR: 32Kb before KCNA1(+)	Intron of MAP3K1(+):31bp after exon 15		GRCh37	TRANSLOCATION	10	10	MAP3K1-intragenic	PRECISE	3to3	MAP3K1 (NM_005921) rearrangement: t(5;12)(q11.2;p13.32)(chr5:g.56179537::chr12:g.4987480)	yes	unknown	0	0	0	0	10
P-0073551-T01-IM7	SOMATIC	MAP3K1	FAM162A	5	3	56189391	122123252	Exon 20 of MAP3K1(+)	Intron of FAM162A(+):42bp after exon 3		GRCh37	TRANSLOCATION	10	5	MAP3K1-intragenic	PRECISE	5to5	MAP3K1 (NM_005921) rearrangement: t(3;5)(q21.1;q11.2)(chr3:g.122123252::chr5:g.56189391)	yes	unknown	0	0	0	0	6
P-0016815-T01-IM6	SOMATIC	MAP3K1		5	5	50161653	56179533	IGR: 103Kb before LOC100287592(-)	Intron of MAP3K1(+):27bp after exon 15		GRCh37	INVERSION			MAP3K1-intragenic	PRECISE	3to3	MAP3K1 (NM_005921) rearrangement: g.50161653_c.3819+27:MAP3K1inv			6017880	23467	47124	0	12
P-0025935-T01-IM6	SOMATIC	MAP3K1		5	5	55920869	56161216	IGR: 114Kb before LOC101928448(-)	Exon 5 of MAP3K1(+)		GRCh37	INVERSION			MAP3K1-intragenic	PRECISE	5to5	MAP3K1 (NM_005921) rearrangement: c.1085:MAP3K1_chr5:g.55920869inv			240347	5644	9393	0	13
P-0016190-T01-IM6	SOMATIC	MAP3K1		5	5	56161244	56348204	Exon 5 of MAP3K1(+)	IGR: 122Kb before GPBP1(+)		GRCh37	DELETION			MAP3K1-intragenic	PRECISE	3to5	MAP3K1 (NM_005921) rearrangement : c.1113:MAP3K1_chr5:g.56348204del			186960	24270	12787	0	68
P-0022282-T01-IM6	SOMATIC	MAP3K1	ARFIP1	5	4	56161250	153712327	Exon 5 of MAP3K1(+)	5-UTR of ARFIP1(+):38Kb before coding start		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {MAP3K1:ARFIP1}	PRECISE	3to5	MAP3K1 (NM_005921) - ARFIP1 (NM_001025595)  rearrangement: t(4;5)(q31.3;q11.2)(chr4:g.153712327::chr5:g.56161250)	yes	unknown	0	0	0	0	5
P-0006856-T01-IM5	SOMATIC	MAP3K1	FLJ37543	5	5	56178481	60995596	Exon 14 of MAP3K1(+)	Intron of FLJ37543(+): 4Kb before exon 4		GRCh37	DELETION	41	46	Protein fusion: mid-exon (MAP3K1-FLJ37543)	PRECISE	3to5	MAP3K1 (NM_005921) - C5orf64 (NM_173667) rearrangement: c.3454:MAP3K1_c.226-4097:C5orf64del	yes	unknown	4817115	42483	27370	0	32
P-0020764-T01-IM6	SOMATIC	MAP3K1	KIAA0825	5	5	56183989	93660865	Intron of MAP3K1(+):63bp before exon 19	Intron of KIAA0825(-):59Kb after exon 20		GRCh37	INVERSION	7	4	Protein Fusion: out of frame  {KIAA0825:MAP3K1}	PRECISE	5to5	KIAA0825 (NM_001145678) - MAP3K1 (NM_005921) rearrangement: c.3710+59208:KIAA0852_c.4258-64:MAP3K1inv	yes	unknown	37476876	149580	175995	0	4
P-0077617-T01-IM7	SOMATIC	MAP3K13	MAP3K13	22	3	30130736	185191375	Intron of ZMAT5(-):3Kb before exon 7	Exon 11 of MAP3K13(+)		GRCh37	TRANSLOCATION	10	13	Antisense Fusion	PRECISE	5to3	MAP3K13 (NM_004721) rearrangement: t(3;22)(q27.2;q12.2)(chr3:g.185191375::chr22:g.30130736)	yes	unknown	0	0	0	0	14
P-0033700-T02-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185167807	185190035	Exon 6 of MAP3K13(+)	Intron of MAP3K13(+):727bp before exon 11		GRCh37	DELETION	10	38	Deletion within transcript : mid-exon	PRECISE	3to5	MAP3K13 (NM_004721) rearrangement: c.1130_c.1644-728del	yes	unknown	22228	5985	7201	0	61
P-0004801-T01-IM5	SOMATIC	MAP3K13	MAP3K13	3	3	185184276	185191139	Intron of MAP3K13(+): 338bp before exon 10	Exon 11 of MAP3K13(+)		GRCh37	DUPLICATION	33	17	Duplication within transcript: mid-exon	PRECISE	5to3	MAP3K13(NM_004721) Rearrangement :  c.1506-338_2020dup	yes	unknown	6863	8621	12039	0	9
P-0068376-T01-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	185181282	185182280	Intron of MAP3K13(+):55bp before exon 8	Intron of MAP3K13(+):833bp after exon 8		GRCh37	INVERSION	10	2	MAP3K13-intragenic	PRECISE	5to5	MAP3K13 (NM_004721) rearrangement: c.1279-56_c.1388+833inv	yes	unknown	998	817	1451	0	3
P-0016054-T01-IM6	SOMATIC	MAP3K14	KANSL1	17	17	43363676	44162424	Intron of MAP3K14(-):121bp after exon 5	Intron of KANSL1(-):3Kb before exon 5		GRCh37	INVERSION	10	40	Antisense Fusion	PRECISE	5to5	MAP3K14 (NM_003954) rearrangement: c.1151+122:MAP3K14_chr17:g.44162424inv	yes	unknown	798748	8954	25015	0	45
P-0068605-T01-IM7	SOMATIC	MAP3K14	DIS3L	17	15	43344817	66596925	Exon 12 of MAP3K14(-)	Intron of DIS3L(+):2Kb before exon 3		GRCh37	TRANSLOCATION	10	25	Antisense Fusion	PRECISE	5to3	MAP3K14 (NM_003954) rearrangement: t(15;17)(q22.31;q21.31)(chr15:g.66596925::chr17:g.43344817)	yes	unknown	0	0	0	0	28
P-0068633-T01-IM7	SOMATIC	MAP3K14	SSTR2	17	17	43351745	71142696	Intron of MAP3K14(-):85bp after exon 7	IGR: 18Kb before SSTR2(+)		GRCh37	INVERSION	10	19	MAP3K14-intragenic	PRECISE	5to5	MAP3K14 (NM_003954) rearrangement: c.1419+86:MAP3K14_chr17:g.71142696inv	yes	unknown	27790951	230667	314840	0	24
P-0004496-T01-IM5	SOMATIC	MAP3K14		17	17	43344803	47960604	Exon 12 of MAP3K14(-)	IGR: 45Kb before TAC4(-)		GRCh37	INVERSION			MAP3K14-intragenic	PRECISE	3to3	MAP3K14 (NM_003954)  rearrangement : c.2295:MAP3K14_chr17:g.47960604inv			4615801	65556	75880	0	11
P-0006072-T01-IM5	SOMATIC	MAP3K14		17	17	43342105	48567110	Exon 16 of MAP3K14(-)	IGR: 4Kb after RSAD1(+)		GRCh37	INVERSION			MAP3K14-intragenic	PRECISE	3to3	MAP3K14 (NM_003954) rearrangement : c.2741:MAP3K14_chr17:g.48567110inv			5225005	110966	106641	0	17
P-0018195-T01-IM6	SOMATIC	MAP3K14		22	17	43080364	43364113	IGR: 8Kb before A4GALT(-)	Exon 5 of MAP3K14(-)		GRCh37	TRANSLOCATION			MAP3K14-intragenic	IMPPRECISE	3to5	MAP3K14 (NM_003954) rearrangement: t(17;22)(q21.31;q13.2)(chr17:g.43364113::chr22:g.43080364)			0	0	0	0	23
P-0056667-T02-IM6	SOMATIC	MAP3K14		20	17	19463571	43345217	Intron of SLC24A3(+):33Kb before exon 3	Intron of MAP3K14(-):91bp before exon 12		GRCh37	TRANSLOCATION			MAP3K14-intragenic	PRECISE	5to3	MAP3K14 (NM_003954) rearrangement: t(17;20)(q21.31;p11.23)(chr17:g.43345217::chr20:g.19463571)			0	0	0	0	28
P-0025647-T01-IM6	SOMATIC	MAP3K14		19	17	414516	43364016	Promoter of SHC2(-):2Kb from tx start	Exon 5 of MAP3K14(-)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {MAP3K14:SHC2}	PRECISE	3to5	MAP3K14 (NM_003954) Rearrangement :  t(17;19)(q21.31;p13.3)(chr17:g.43364016::chr19:g.50046598)			0	0	0	0	7
P-0046530-T01-IM6	SOMATIC	MAP3K14	SMURF2	17	17	43348562	62584761	Exon 10 of MAP3K14(-)	Intron of SMURF2(-):2Kb after exon 5		GRCh37	DUPLICATION	10	231	Protein Fusion: mid-exon  {MAP3K14:SMURF2}	PRECISE	5to3	MAP3K14 (NM_003954) - SMURF2 (NM_022739) rearrangement: c.1683:MAP3K14_c.400+2441:SMURF2dup	yes	unknown	19236199	146618	396717	0	237
P-0004496-T01-IM5	SOMATIC	MAP3K14	ZNF257	19	17	22270191	43344878	Intron of ZNF257(+): 588bp before exon 4	Exon 12 of MAP3K14(-)		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (MAP3K14-ZNF257)	PRECISE	5to5	MAP3K14 (NM_003954) - ZNF257 (NM_033468) rearrangement : t(17;19)(17q21.31;19p12)(chr17:g.43344878::chr19:22270191)			0	0	0	0	8
P-0077710-T01-IM7	SOMATIC	MAP3K9	ATM	14	11	71206507	108123535	Intron of MAP3K9(-):251bp after exon 7	Intron of ATM(+):8bp before exon 12		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {MAP3K9:ATM}	PRECISE	5to5	MAP3K9 (NM_033141) - ATM (NM_000051) rearrangement: t(11;14)(q22.3;q24.2)(chr11:g.108123535::chr14:g.71206507)			0	0	0	0	12
P-0059956-T01-IM7	SOMATIC	MAPK1	MAPK1	22	22	22161945	22164646	Intron of MAPK1(-):7bp after exon 2	Intron of MAPK1(-):3Kb before exon 2		GRCh37	DELETION	10	8	Deletion of 1 exon : in frame	PRECISE	3to5	MAPK1 (NM_002745) rearrangement: c.120-2511_c.302+8del	yes	unknown	2701	1537	1275	0	8
P-0072598-T01-IM7	SOMATIC	MAPK1	MAPK1	22	22	22123501	22137600	Exon 8 of MAPK1(-)	Intron of MAPK1(-):5Kb after exon 6		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	MAPK1 (NM_002745) rearrangement: c.856+4946_c.1075del	yes	unknown	14099	1586	2503	0	11
P-0050927-T01-IM6	SOMATIC	MAPK1		22	8	22142957	12806402	Intron of MAPK1(-):25bp after exon 5	5-UTR of KIAA1456(+):57Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {KIAA1456:MAPK1}	PRECISE	3to3	MAPK1 (NM_002745) rearrangement: t(8;22)(p22;q11.21)(chr8:g.12806402::chr22:g.22142957)			0	0	0	0	9
P-0015734-T01-IM6	SOMATIC	MAPK3	MAPK3	16	16	30134528	30135079	Exon 1 of MAPK3(-)	Promoter of MAPK3(-): 449bp from tx start		GRCh37	DELETION	0	88	Deletion within transcript: mid-exon	IMPRECISE	3to5	MAPK3 (NM_002746) Rearrangement : c.-549_c.3del	yes	unknown	551	0	5	0	83
P-0037151-T01-IM6	SOMATIC	MAPK3	MAPK3	16	16	30128466	30130544	Intron of MAPK3(-):8bp after exon 6	Intron of MAPK3(-):685bp before exon 3		GRCh37	DUPLICATION	3	3	Duplication of 4 exons : out of frame	PRECISE	5to3	MAPK3 (NM_002746) Rearrangement : c.354-685_c.907+9dup	yes	unknown	2078	4645	5590	0	3
P-0010463-T01-IM5	SOMATIC	MAPK3		16	16	6053896	30128671	IGR: 15Kb before A2BP1(+)	Intron of MAPK3(-): 65bp before exon 6		GRCh37	INVERSION			MAPK3-intragenic	IMPRECISE	3to3	MAPK3 (NM_002746) : rearrangement: c.776-65_chr16:g.6053896inv			24074775	152573	138668	0	26
P-0014072-T01-IM5	SOMATIC	MAPK3		16	16	9301176	30129378	IGR: 116Kb before C16orf72(+)	Exon 4 of MAPK3(-)		GRCh37	DELETION			MAPK3-intragenic	PRECISE	3to5	MAPK3 (NM_002746) rearrangement: chr16:g.9301176_c.650:MAPK3del			20828202	219254	170265	0	75
P-0067694-T01-IM7	SOMATIC	MAPK3	MAPK3	16	16	6442323	30128845	5-UTR of RBFOX1(+):660Kb before coding start	Intron of MAPK3(-):145bp after exon 5		GRCh37	INVERSION	10	29	Transcript Fusion {MAPK3:RBFOX1}	PRECISE	5to5	MAPK3 (NM_002746) rearrangement: c.775+146:MAPK3_chr16:g.6442323inv	yes	unknown	23686522	151671	262231	0	30
P-0005211-T01-IM5	SOMATIC	MAPK4	SMAD4	18	18	48227925	48573464	Intron of MAPK4(+): 14Kb before exon 3	Exon 2 of SMAD4(+)		GRCh37	DELETION	10	8	Protein fusion: mid-exon (MAPK4-SMAD4)	PRECISE	3to5	MAPK4 (NM_002747) - SMAD4 (NM_005359) Rearrangement: c.547-13524:MAPK4_c.48:SMAD4del	yes	unknown	345539	854	639	0	7
P-0020730-T01-IM6	SOMATIC	MAPK8IP3	NTHL1	16	16	1773119	2090049	Intron of MAPK8IP3(+):1Kb before exon 2	Intron of NTHL1(-):1bp before exon 6		GRCh37	INVERSION			Protein Fusion: out of frame  {MAPK8IP3:NTHL1}	PRECISE	3to3	MAPK8IP3 (NM_015133) - NTHL1 (NM_002528) rearrangement: c.319-1439:MAPK8IP3_c.816-1:NTHL1inv			316930	3153	3107	0	45
P-0065081-T02-IM7	SOMATIC	MAPKAP1	MAPKAP1	9	9	128246860	128305336	Exon 9 of MAPKAP1(-)	Intron of MAPKAP1(-):1bp after exon 7		GRCh37	DELETION	3	3	Deletion within transcript : mid-exon	PRECISE	3to5	MAPKAP1 (NM_001006617) rearrangement: c.958+2_c.1069del	yes	unknown	58476	2696	4320	0	3
P-0044470-T01-IM6	SOMATIC	MAPKAP1	MIR548AJ2	9	4	128230200	23486215	Intron of MAPKAP1(-):50bp after exon 10	IGR: 286Kb before MIR548AJ2(-)		GRCh37	TRANSLOCATION	10	39	MAPKAP1-intragenic	PRECISE	5to3	MAPKAP1 (NM_001006617) rearrangement: t(4;9)(p15.2;q33.3)(chr4:g.23486215::chr9:g.128230200)	yes	unknown	0	0	0	0	40
P-0065731-T01-IM7	SOMATIC	MAPKAP1	KIF2A	9	5	128206767	61656674	Intron of MAPKAP1(-):12bp after exon 11	Intron of KIF2A(+):394bp before exon 10		GRCh37	TRANSLOCATION	0	12	Protein Fusion: out of frame  {MAPKAP1:KIF2A}	IMPPRECISE	5to5	MAPKAP1 (NM_001006617) - KIF2A (NM_001098511) rearrangement: t(5;9)(q12.1;q33.3)(chr5:g.61656674::chr9:g.128206767)	yes	unknown	0	0	0	0	13
P-0039225-T01-IM6	SOMATIC	MARK2	RPS6KA4	11	11	63637833	64128888	Intron of MARK2(+):25Kb before exon 2	Intron of RPS6KA4(+):52bp before exon 6		GRCh37	DELETION	0	11	Protein Fusion: in frame  {MARK2:RPS6KA4}	IMPPRECISE	3to5	MARK2 (NM_001039469) - RPS6KA4 (NM_003942) rearrangement: c.55-24798:MARK2_c.571-53:RPS6KA4del	yes	unknown	491055	8552	9772	0	11
P-0072861-T01-IM7	SOMATIC	MAX		14	14	65543196	65559966	Exon 5 of MAX(-)	Intron of MAX(-):459bp after exon 3		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	MAX (NM_002382) rearrangement: c.171+460_c.481dup			16770	4244	6408	0	35
P-0027288-T01-IM6	SOMATIC	MBD3	TCF3	19	19	1593723	1621036	Promoter of MBD3(-):17Kb from tx start	Exon 12 of TCF3(-)		GRCh37	DUPLICATION	10	10	Protein Fusion: mid-exon  {MBD3:TCF3}	PRECISE	5to3	TCF3 (NM_001136139) rearrangement: chr19:g.1593723_c.1024dup	yes	unknown	27313	12515	11283	0	10
P-0012373-T01-IM5	SOMATIC	MBD3	TCF3	19	19	1589382	1612135	Intron of MBD3(-): 3Kb after exon 1	Intron of TCF3(-): 71bp after exon 17		GRCh37	DELETION	7	10	Protein fusion: out of frame (TCF3-MBD3)	PRECISE	3to5	TCF3 (NM_001136139) - MBD3 (NM_003926) rearrangement: c.1813+71:TCF3_c.110+3139:MBD3del	yes	unknown	22753	2371	1584	0	9
P-0047359-T01-IM6	SOMATIC	MBIP	RET								GRCh37				MBIP-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: MBIP-RET fusion. Note: The rearrangement is an in-frame fusion between genes MBIP Exon7 (NM_016586) and RET Exon12 (NM_020975).	yes	unknown					
P-0047359-T01-IM6	SOMATIC	MBIP	RET	14	10	36773155	43610084	Intron of MBIP(-):3Kb before exon 8	Exon 11 of RET(+)		GRCh37	TRANSLOCATION	10	8	Protein Fusion: mid-exon  {MBIP:RET}	PRECISE	5to5	MBIP (NM_016586) - RET (NM_020975) fusion: t(10;14)(q11.21;q13.3)(chr10:g.43610084::chr14:g.36773155)	yes	unknown	0	0	0	0	9
P-0022094-T01-IM6	SOMATIC	MBTD1	RNF43	17	17	49297932	56436355	Intron of MBTD1(-):108bp before exon 4	Intron of RNF43(-):171bp before exon 9		GRCh37	DUPLICATION	9	2	Protein Fusion: in frame  {MBTD1:RNF43}	PRECISE	5to3	MBTD1 (NM_017643) - RNF43 (NM_017763) Rearrangement: c.155-108:MBTD1_c.953-171:RNF43dup	yes	unknown	7138423	45313	64120	0	2
P-0006896-T01-IM5	SOMATIC	MCF2L2	TP63	3	3	183126345	189582319	Intron of MCF2L2(-): 19Kb before exon 2	Intron of TP63(+): 112bp after exon 5		GRCh37	INVERSION	11	10	Protein fusion: in frame (TP63-MCF2L2)	PRECISE	3to3	TP63 (NM_003722) - MCF2L2 (NM_015078) rearrangement: c.766+112:TP63_c.77-18778:MCF2L2inv	yes	unknown	6455974	78354	69082	0	10
P-0042766-T01-IM6	SOMATIC	MCL1	MCL1	3	1	97440154	150551927	Intron of EPHA6(+):900bp after exon 15	Exon 1 of MCL1(-)		GRCh37	TRANSLOCATION	10	26	MCL1-intragenic	PRECISE	5to3	MCL1 (NM_021960) rearrangement: t(1;3)(q21.3;q11.2)(chr1:g.150551927::chr3:g.97440154)	yes	unknown	0	0	0	0	27
P-0011192-T01-IM5	SOMATIC	MCL1	ENSA	1	1	150552571	150601162	Promoter of MCL1(-): 435bp from tx start	Intron of ENSA(-): 375bp after exon 1		GRCh37	DUPLICATION			Transcript fusion (MCL1-ENSA)	PRECISE	5to3	MCL1 (NM_021960) - ENSA (NM_004436) rearrangement : c.-565:MCL1_c.57+728:ENSAdup			48591	378	684	0	20
P-0036370-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30666529	30680829	Promoter of MDC1(-):1Kb from tx start	Exon 5 of MDC1(-)		GRCh37	INVERSION	10	21	Antisense Fusion	PRECISE	5to5	MDC1 (NM_014641) rearrangement: c.890:MDC1_chr6:g.30666529inv	yes	unknown	14300	39486	37967	0	34
P-0055493-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30675230	30677101	Exon 9 of MDC1(-)	Intron of MDC1(-):967bp before exon 8		GRCh37	DELETION	9	6	Deletion within transcript : mid-exon	PRECISE	3to5	MDC1 (NM_014641) rearrangement: c.2222-967_c.3015del	yes	unknown	1871	12346	7666	0	7
P-0069277-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30671266	30684580	Exon 11 of MDC1(-)	5-UTR of MDC1(-):16Kb before coding start		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	MDC1 (NM_014641) rearrangement: c.5611:MDC1_chr6:g.30684580del	yes	unknown	13314	29105	56210	0	22
P-0023913-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30671024	30673526	Exon 12 of MDC1(-)	Exon 10 of MDC1(-)		GRCh37	INVERSION	5	2	MDC1-intragenic	PRECISE	3to3	MDC1 (NM_014641) rearrangement: c.3434_c.5722inv	yes	unknown	2502	11448	12676	0	1
P-0039808-T01-IM6	SOMATIC	MDC1	IER3	6	6	30676074	30741532	Exon 8 of MDC1(-)	IGR: 31Kb before IER3(-)		GRCh37	INVERSION	10	20	MDC1-intragenic	PRECISE	5to5	MDC1 (NM_014641) rearrangement: c.2282:MDC1_chr6:g.30741532inv	yes	unknown	65458	23419	49475	0	36
P-0050895-T01-IM6	SOMATIC	MDC1	MDC1	18	6	7361943	30672670	IGR: 131Kb before LRRC30(+)	Exon 10 of MDC1(-)		GRCh37	TRANSLOCATION	10	48	MDC1-intragenic	PRECISE	3to5	MDC1 (NM_014641) rearrangement: t(6;18)(p21.33;p11.23)(chr6:g.30672670::chr18:g.7361943)	yes	unknown	0	0	0	0	55
P-0051410-T03-IM6	SOMATIC	MDC1	RHAG	6	6	30679700	49573772	Exon 5 of MDC1(-)	Intron of RHAG(-):229bp before exon 10		GRCh37	INVERSION	10	10	MDC1-intragenic	PRECISE	3to3	MDC1 (NM_014641) rearrangement: c.2019:MDC1_chr6:g.49573772inv	yes	unknown	18894072	312596	279412	0	10
P-0044137-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30672415	30677041	Exon 10 of MDC1(-)	Intron of MDC1(-):907bp before exon 8		GRCh37	INVERSION	0	9	MDC1-intragenic	IMPPRECISE	3to3	MDC1 (NM_014641) rearrangement: c.2222-907_c.4545inv	yes	unknown	4626	21010	25197	0	9
P-0037098-T01-IM6	SOMATIC	MDC1	TINAG	6	6	30671008	54282565	Exon 12 of MDC1(-)	IGR: 109Kb before TINAG(+)		GRCh37	DUPLICATION	10	18	MDC1-intragenic	PRECISE	5to3	MDC1 (NM_014641) rearrangement: c.5738:MDC1_chr6:g.54282565dup	yes	unknown	23611557	324827	361895	0	18
P-0008709-T01-IM5	SOMATIC	MDC1		6	6	30675598	30822725	Exon 8 of MDC1(-)	IGR: 29Kb before DDR1(+)		GRCh37	DUPLICATION			MDC1-intragenic	PRECISE	5to3	MDC1 (NM_014641) rearrangement: c.2758_chr6:g.30822725dup.			147127	31993	34073	0	25
P-0013985-T01-IM5	SOMATIC	MDC1		6	3	30681978	179829046	Intron of MDC1(-): 18bp before exon 3	IGR: 311Kb before PEX5L(-)		GRCh37	TRANSLOCATION			MDC1-intragenic	PRECISE	3to3	MDC1 (NM_014641) Rearrangement : t(3,6)(q26.33,p21.33)(chr3:g.179829046::chr6:g.30681978)			0	0	0	0	11
P-0028118-T01-IM6	SOMATIC	MDC1		6	6	30681681	58454054	Exon 3 of MDC1(-)	IGR: 182Kb before GUSBP4(-)		GRCh37	INVERSION			MDC1-intragenic	PRECISE	5to5	MDC1 (NM_014641) rearrangement: c.416:MDC1_chr6:g.58454054inv			27772373	221677	401696	0	39
P-0030626-T01-IM6	SOMATIC	MDC1		6	6	30671433	64207942	Exon 10 of MDC1(-)	IGR: 74Kb before PTP4A1(+)		GRCh37	DUPLICATION			MDC1-intragenic	PRECISE	5to3	MDC1 (NM_014641) rearrangement: c.5527_chr6:g.64207942dup			33536509	242093	258974	0	9
P-0015674-T01-IM6	SOMATIC	MDC1		6	3	30668411	161148916	Intron of MDC1(-): 2bp before exon 15	IGR: 59Kb after C3orf57(-)		GRCh37	TRANSLOCATION			MDC1-intragenic	PRECISE	3to3	MDC1 (NM_014641) rearrangement: t(3;6)(q26.1;p21.33)(chr3:g.161148916::chr6:g.30668411)			0	0	0	0	31
P-0047996-T02-IM6	SOMATIC	MDC1	FLOT1	6	6	30670257	30696449	Intron of MDC1(-):72bp after exon 14	Intron of FLOT1(-):527bp before exon 13		GRCh37	DUPLICATION	0	9	Protein Fusion: in frame  {MDC1:FLOT1}	IMPPRECISE	5to3	MDC1 (NM_014641) - FLOT1 (NM_005803) rearrangement: c.6102+73:MDC1_c.1255-527:FLOT1dup	yes	unknown	26192	50672	74786	0	20
P-0054813-T01-IM6	SOMATIC	MDC1	SUPT3H	6	6	30681365	45288971	Intron of MDC1(-):59bp after exon 4	Intron of SUPT3H(-):561bp after exon 4		GRCh37	DUPLICATION	0	6	Protein Fusion: in frame  {MDC1:SUPT3H}	IMPPRECISE	5to3	MDC1 (NM_014641) rearrangement: c.587+60:MDC1_c.101+43967:SUPT3Hinv	yes	unknown	14607606	260256	299725	0	6
P-0047358-T01-IM6	SOMATIC	MDC1	DNAH8	6	6	30681613	38786047	Exon 3 of MDC1(-)	Intron of DNAH8(+):3Kb after exon 26		GRCh37	INVERSION	10	20	Protein Fusion: mid-exon  {MDC1:DNAH8}	PRECISE	5to5	MDC1 (NM_014641) - DNAH8 (NM_001206927) rearrangement: c.484:MDC1_c.3523+2614:DNAH8inv	yes	unknown	8104434	190692	317077	0	20
P-0060847-T01-IM7	SOMATIC	MDC1	RREB1	6	6	7224681	30679857	Intron of RREB1(+):2Kb before exon 9	Exon 5 of MDC1(-)		GRCh37	INVERSION	10	2	Protein Fusion: mid-exon  {MDC1:RREB1}	PRECISE	5to5	MDC1 (NM_014641) - RREB1 (NM_001003699) rearrangement: c.1862:MDC1_c.708-2019:RREB1inv	yes	unknown	23455176	272550	488738	0	2
P-0019564-T01-IM6	SOMATIC	MDM2		12	12	69233143	71085394	Exon 11 of MDM2(+)	Intron of PTPRR(-):7Kb after exon 8		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	MDM2 (NM_002392) rearrangement: c.1008_g.71085394del			1852251	2705	5133	0	12
P-0053245-T02-IM6	SOMATIC	MDM2	MDM2	12	12	69229675	69234045	Exon 9 of MDM2(+)	3-UTR of MDM2(+):32Kb after coding stop		GRCh37	INVERSION	6	4	MDM2-intragenic	PRECISE	5to5	MDM2 (NM_002392) rearrangement: c.751:MDM2_chr12:g.69234045inv	yes	unknown	4370	4277	2089	0	4
P-0071686-T01-IM7	SOMATIC	MDM2	MDM2	16	12	61216248	69218152	IGR: 470Kb before CDH8(-)	Exon 6 of MDM2(+)		GRCh37	TRANSLOCATION	10	9	MDM2-intragenic	PRECISE	5to5	MDM2 (NM_002392) rearrangement: t(12;16)(q15;q21)(chr12:g.69218152::chr16:g.61216248)	yes	unknown	0	0	0	0	9
P-0042173-T01-IM6	SOMATIC	MDM2	CADM3	12	1	69233222	159155314	Exon 11 of MDM2(+)	Intron of CADM3(+):4Kb before exon 2		GRCh37	TRANSLOCATION	10	11	Protein Fusion: mid-exon  {MDM2:CADM3}	PRECISE	3to5	MDM2 (NM_002392) - CADM3 (NM_021189) rearrangement: t(1;12)(q23.2;q15)(chr1:g.159155314::chr12:g.69233222)	yes	unknown	0	0	0	0	11
P-0019792-T01-IM6	SOMATIC	MDM4		2	1	178015265	204518563	IGR: 62Kb before HNRNPA3(+)	Exon 11 of MDM4(+)		GRCh37	TRANSLOCATION			MDM4-intragenic	PRECISE	5to3	MDM4 (NM_002393) rearrangement: t(1;2)(q32.1;q31.2)(chr1:g.204518563::chr2:g.178015265)			0	0	0	0	18
P-0083888-T02-IM7	SOMATIC	MDM4		1	1	204462491	204507343	IGR: 23Kb before MDM4(+)	Exon 7 of MDM4(+)		GRCh37	DELETION			MDM4-intragenic	PRECISE	3to5	MDM4 (NM_002393) rearrangement: c.418:MDM4_chr1:g.204462491del			44852	7081	7726	0	4
P-0048320-T01-IM6	SOMATIC	MDM4	EFCAB6	22	1	44039483	204516048	Intron of EFCAB6(-):8Kb before exon 18	Intron of MDM4(+):43bp after exon 10		GRCh37	TRANSLOCATION	10	23	Protein Fusion: in frame  {MDM4:EFCAB6}	PRECISE	3to3	MDM4 (NM_002393) - EFCAB6 (NM_022785) rearrangement: t(1;22)(q32.1;q13.2)(chr1:g.204516048::chr22:g.44039483)	yes	unknown	0	0	0	0	23
P-0059710-T01-IM7	SOMATIC	ME1	PIK3CA								GRCh37				ME1-PIK3CA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ME1-PIK3CA fusion. Note: The rearrangement is an out of frame fusion between genes ME1 Exon1 (NM_002395) and PIK3CA Exon2 (NM_006218). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0079861-T01-IM7	SOMATIC	ME2	SMAD4	18	18	48435207	48593534	Intron of ME2(+):641bp after exon 3	Exon 10 of SMAD4(+)		GRCh37	DELETION	10	10	Protein Fusion: mid-exon  {ME2:SMAD4}	PRECISE	3to5	ME2 (NM_002396) - SMAD4 (NM_005359) rearrangement: c.242+641:ME2_c.1285:SMAD4del	yes	unknown	158327	9819	22721	0	11
P-0045582-T01-IM6	SOMATIC	MECOM	RSPO2								GRCh37				MECOM-RSPO2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: MECOM-RSPO2 fusion. Note: The rearrangement is a fusion between genes MECOM Exon2 (NM_004991) and RSPO2 Exon2 (NM_178565).   Note2: The fusion involves the untranslated region of RSPO2 exon2.	yes	unknown					
P-0021363-T01-IM6	SOMATIC	MED1	WHSC1L1	17	8	37599287	38148034	Intron of MED1(-):515bp after exon 3	Exon 17 of WHSC1L1(-)		GRCh37	TRANSLOCATION	0	193	Protein Fusion: mid-exon  {WHSC1L1:MED1}	IMPPRECISE	3to5	WHSC1L1 (NM_023034) - MED1 (NM_004774) rearrangement: t(8;17)(p11.23;q12)(chr8:g.38148034::chr17:g.37599287)	yes	unknown	0	0	0	0	251
P-0076666-T03-IM7	SOMATIC	MED12	ZCCHC13	X	X	70341216	73526917	Exon 6 of MED12(+)	Promoter of ZCCHC13(+):3Kb from tx start		GRCh37	INVERSION	10	9	Antisense Fusion	PRECISE	3to3	MED12 (NM_005120) rearrangement: c.775:MED12_chrX:g.73526917inv	yes	unknown	3185701	74189	86599	0	12
P-0003511-T01-IM5	SOMATIC	MED12		X	X	70356358	70357535	Exon 37 of MED12(+)	Intron of MED12(+): 41bp before exon 41		GRCh37	INVERSION			Antisense fusion	IMPRECISE	3to3				1177	4548	5839	0	75
P-0025924-T01-IM6	SOMATIC	MED12	MED12	X	X	70357566	70360885	Intron of MED12(+):9bp before exon 41	Intron of MED12(+):178bp after exon 42		GRCh37	DELETION	10	7	Deletion of 2 exons : in frame	PRECISE	3to5	MED12 (NM_005120) rearrangement: c.5827-10_c.6267+178del	yes	unknown	3319	5056	7302	0	7
P-0032571-T01-IM6	SOMATIC	MED12	MED12	X	X	70340002	70343489	Exon 4 of MED12(+)	Exon 12 of MED12(+)		GRCh37	DUPLICATION	10	45	Duplication within transcript : mid-exon	PRECISE	5to3	MED12 (NM_005120) Rearrangement : c.535_c.1663dup	yes	unknown	3487	13841	25068	0	45
P-0060253-T01-IM7	SOMATIC	MED12	MED12	X	X	70355052	70361330	Exon 36 of MED12(+)	Intron of MED12(+):110bp after exon 43		GRCh37	DUPLICATION	10	45	Duplication within transcript : mid-exon	PRECISE	5to3	MED12 (NM_005120) rearrangement: c.4974_c.6408+110dup	yes	unknown	6278	18287	21567	0	45
P-0054867-T01-IM6	SOMATIC	MED12	POU3F4	X	X	70356988	82069997	Intron of MED12(+):48bp before exon 39	IGR: 693Kb before POU3F4(+)		GRCh37	INVERSION	0	26	MED12-intragenic	IMPPRECISE	5to5	MED12 (NM_005120) Rearrangement : c.5552-49:MED12_chrX:g.82069997inv	yes	unknown	11713009	101015	172474	0	26
P-0043000-T02-IM6	SOMATIC	MED12	SUGT1	X	13	70356437	53230412	Exon 37 of MED12(+)	Intron of SUGT1(+):1Kb before exon 3		GRCh37	TRANSLOCATION	10	8	MED12-intragenic	PRECISE	5to5	MED12 (NM_005120) rearrangement: t(13;X)(q14.3;q13.1)(chr13:g.53230412::chrX:g.70356437)	yes	unknown	0	0	0	0	11
P-0043502-T02-IM6	SOMATIC	MED12	MED12	X	X	68183411	70349012	IGR: 135Kb before EFNB1(+)	Exon 25 of MED12(+)		GRCh37	INVERSION	0	6	MED12-intragenic	IMPPRECISE	5to5	MED12 (NM_005120) rearrangement: c.3524:MED12_chrX:g.68183411inv	yes	unknown	2165601	36158	40501	0	7
P-0019528-T01-IM6	SOMATIC	MED12		X	7	70357796	57366619	Intron of MED12(+):3bp after exon 41	IGR: 106Kb before MIR3147(+)		GRCh37	TRANSLOCATION			MED12-intragenic	PRECISE	3to3	MED12 (NM_005120) rearrangement: t(7;X)(p11.2;q13.1)(chr7:g.57366619::chrX:g.70357796)			0	0	0	0	18
P-0029543-T01-IM6	SOMATIC	MED12	HEATR5A	X	14	70357685	31844633	Exon 41 of MED12(+)	Intron of HEATR5A(-):459bp before exon 12		GRCh37	TRANSLOCATION	10	79	Protein Fusion: mid-exon  {MED12:HEATR5A}	PRECISE	3to3	MED12 (NM_005120) - HEATR5A (NM_015473) rearrangement: t(X;14)(q13.1;q12)(chrX:g.70357685::chr14:g.31844633)	yes	unknown	0	0	0	0	79
P-0048104-T01-IM6	SOMATIC	MED13	CDK12	17	17	37627894	60067043	Exon 2 of CDK12(+)	Intron of MED13(-):3Kb before exon 12		GRCh37	INVERSION	10	96	Protein Fusion: mid-exon  {MED13:CDK12}	PRECISE	5to5	MED13 (NM_005121) - CDK12 (NM_016507) rearrangement: c.2264-2554:MED13_c.1809:CDK12inv	yes	unknown	22439149	382927	706070	0	121
P-0063923-T01-IM7	SOMATIC	MEF2B	UQCRFS1	19	19	19257424	29712775	Exon 7 of MEF2B(-)	IGR: 15Kb before UQCRFS1(-)		GRCh37	INVERSION	10	49	MEF2B-intragenic	PRECISE	5to5	MEF2B (NM_001145785) rearrangement: c.709:MEF2B_chr19:g.29712775inv	yes	unknown	10455351	42028	54634	0	50
P-0025824-T01-IM6	SOMATIC	MEF2B		19	19	19260016	23671215	Intron of MEF2B(-):18bp after exon 3	IGR: 89Kb before LINC01224(-)		GRCh37	INVERSION			MEF2B-intragenic	IMPPRECISE	5to5	MEF2B (NM_001145785) rearrangement: c.258+19_chr19:g.23671215inv			4411199	5567	10865	0	12
P-0052131-T01-IM6	SOMATIC	MELK	PAX5	9	9	36635354	36840564	Intron of MELK(+):2Kb after exon 10	Exon 10 of PAX5(-)		GRCh37	INVERSION	10	2	Protein Fusion: mid-exon  {MELK:PAX5}	PRECISE	3to3	MELK (NM_014791) - PAX5 (NM_016734) rearrangement: c.834+2157:MELK_c.1169:PAX5inv	yes	unknown	205210	863	685	0	2
P-0078210-T01-IM7	SOMATIC	MEN1	EHD1	11	11	64572127	64635572	Exon 10 of MEN1(-)	Intron of EHD1(-):6Kb after exon 2		GRCh37	INVERSION	9	6	Antisense Fusion	PRECISE	5to5	MEN1 (NM_000244) rearrangement: c.1527:MEN1_chr11:g.64635572inv	yes	unknown	63445	17079	24040	0	6
P-0013749-T01-IM5	SOMATIC	MEN1	MEN1	11	11	64575100	64577175	Exon 5 of MEN1(-)	Exon 3 of MEN1(-)		GRCh37	DELETION	52	17	Deletion within transcript: mid-exon	PRECISE	3to5	MEN1 (NM_000244) Rearrangement : c.407_722del	yes	unknown	2075	3565	3287	0	17
P-0009813-T01-IM5	SOMATIC	MEN1	MEN1	11	11	64577362	64579361	Exon 3 of MEN1(-)	Promoter of MEN1(-): 595bp from tx start		GRCh37	DELETION	73	46	Deletion within transcript: mid-exon	PRECISE	3to5	MEN1 (NM_000244) rearrangement : c.-1283_220del	yes	unknown	1999	1476	261	0	45
P-0057426-T02-IM6	SOMATIC	MEN1	EHD1	11	11	64574627	64642409	Intron of MEN1(-):23bp after exon 5	Intron of EHD1(-):419bp before exon 2		GRCh37	INVERSION	10	9	MEN1-intragenic	PRECISE	3to3	MEN1 (NM_000244) rearrangement: c.839+24:MEN1_chr11:g.64642409inv	yes	unknown	67782	11285	9783	0	9
P-0039732-T01-IM6	SOMATIC	MEN1		14	11	99779942	64574412	IGR: 84Kb before SETD3(-)	Intron of MEN1(-):70bp after exon 6		GRCh37	TRANSLOCATION			MEN1-intragenic	IMPPRECISE	3to5	MEN1 (NM_000244) rearrangement: t(11;14)(q13.1;q32.2)(chr11:g.64574412::chr14:g.99779942)			0	0	0	0	7
P-0061977-T01-IM7	SOMATIC	MEN1		11	11	64574526	65179364	Exon 6 of MEN1(-)	3-UTR of FRMD8(+):25Kb after coding stop		GRCh37	DELETION			MEN1-intragenic	PRECISE	3to5	MEN1 (NM_000244) rearrangement: c.884:MEN1_chr11:g.65179364del			604838	13576	19274	0	29
P-0034306-T01-IM6	SOMATIC	MEN1	MAML2	11	11	64573712	95957334	Exon 7 of MEN1(-)	Intron of MAML2(-):117Kb after exon 1		GRCh37	DELETION	3	3	Protein Fusion: mid-exon  {MAML2:MEN1}	PRECISE	3to5	MAML2 (NM_032427) - MEN1 (NM_000244) rearrangement: c.513+117213:MAML2_c.1056:MEN1del	yes	unknown	31383622	266989	407310	0	3
P-0022114-T01-IM6	SOMATIC	MET	MET	7	7	116396144	116398648	Intron of MET(+):575bp after exon 6	Exon 9 of MET(+)		GRCh37	INVERSION	7	2	Antisense Fusion	PRECISE	3to3	MET (NM_000245) rearrangement : c.1862+575_c.2238inv	yes	unknown	2504	4124	6816	0	2
P-0037643-T01-IM6	SOMATIC	MET	MET	7	7	116411750	116414429	Intron of MET(+):42bp after exon 13	Intron of MET(+):505bp before exon 15		GRCh37	DELETION	10	83	Deletion of 1 exon : in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.2887+42_c.3029-506del	yes	unknown	2679	31921	12820	0	90
P-0063539-T02-IM7	SOMATIC	MET		7	7	116411783	116413127	Intron of MET(+):75bp after exon 13	Intron of MET(+):1Kb after exon 14		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.2887+75_c.3028+1084del			1344	4213	4913	0	126
P-0065287-T01-IM7	SOMATIC	MET		7	7	116411726	116414832	Intron of MET(+):18bp after exon 13	Intron of MET(+):102bp before exon 15		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.2887+18_c.3029-103del			3106	12644	9212	0	22
P-0072035-T01-IM7	SOMATIC	MET		7	7	116411838	116412883	Intron of MET(+):64bp before exon 14	Intron of MET(+):840bp after exon 14		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.2888-65_c.3028+840del			1045	3681	3883	0	20
P-0013919-T01-IM5	SOMATIC	MET	MET	7	7	116411743	116413753	Intron of MET(+): 35bp after exon 13	Intron of MET(+): 1Kb before exon 15		GRCh37	DELETION	39	40	Deletion of 1 exon: in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.2887+35_c.3029-1182del	yes	unknown	2010	2079	1630	0	38
P-0041210-T01-IM6	SOMATIC	MET		7	7	116364828	116397683	Intron of MET(+):7Kb before exon 3	Intron of MET(+):8bp before exon 8		GRCh37	DELETION			Deletion of 5 exons : in frame	PRECISE	3to5	MET (NM_000245) rearrangement: c.1201-6894_c.1966-9del			32855	7729	11056	0	8
P-0054879-T01-IM6	SOMATIC	MET	MET	7	7	116394304	116397566	Intron of MET(+):1Kb before exon 6	Exon 7 of MET(+)		GRCh37	DELETION	7	4	Deletion within transcript : mid-exon	PRECISE	3to5	MET (NM_000245) rearrangement: c.1702-1105: MET_c.1938: METdel	yes	unknown	3262	2144	2754	0	4
P-0028283-T02-IM6	SOMATIC	MET	MET	7	7	116381736	116411952	Intron of MET(+):657bp after exon 5	Exon 14 of MET(+)		GRCh37	DELETION	10	47	Deletion within transcript : mid-exon	PRECISE	3to5	MET (NM_000245) rearrangement: c.1701+657_c.2937del	yes	unknown	30216	12375	8885	0	55
P-0029071-T03-IM7	SOMATIC	MET	MET	7	7	116316227	116339283	5-UTR of MET(+):23Kb before coding start	Exon 2 of MET(+)		GRCh37	DUPLICATION	10	10	Duplication within transcript : mid-exon	PRECISE	5to3	MET (NM_000245) rearrangement: c.145:MET_chr7:g.116316227dup	yes	unknown	23056	1599	3614	0	10
P-0028792-T01-IM7	SOMATIC	MET		7	5	116409729	33450531	Exon 12 of MET(+)	Intron of TARS(+):2Kb after exon 4		GRCh37	TRANSLOCATION			MET-intragenic	IMPPRECISE	5to5	MET (NM_000245) rearrangement: t(5;7)(p13.3;q31.2)(chr5:g.33450531::chr7:g.116409729)			0	0	0	0	47
P-0062959-T01-IM7	SOMATIC	MET		7	7	110336687	116413806	Intron of IMMP2L(-):33Kb before exon 7	Intron of MET(+):1Kb before exon 15		GRCh37	DELETION			MET-intragenic	PRECISE	3to5	MET (NM_000245) rearrangement: c.3029-1129:MET_chr7:g.110336687del			6077119	57080	18973	0	5
P-0019588-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0020363-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			MET Exon14: DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0022129-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0027988-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0031076-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon14 (NM_000245) Deletion	yes	unknown					
P-0035162-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:     POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL   MET Exon 14 Skipping (NM_000245). This alteration was detected despite the sample quality falling slightly below our established threshold.	yes	unknown					
P-0038228-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL: MET Exon 14 skipping.	yes	unknown					
P-0040127-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION POSITIVE FOR AN ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   MET Exon 14 skipping (NM_000245)	yes	unknown					
P-0040649-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon 14 skipping (NM_000245).	yes	unknown					
P-0050024-T02-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon 14 skipping (NM_000245).	yes	unknown					
P-0060133-T01-IM7	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   MET exon 14 Skipping (NM_000245).	yes	unknown					
P-0019516-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:   POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0021112-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon 14 Skipping	yes	unknown					
P-0025280-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0025657-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon 14 skipping (NM_000245).	yes	unknown					
P-0028694-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL: MET Exon 14 Skipping	yes	unknown					
P-0029472-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET  Exon 14 (NM_000245) Skipping	yes	unknown					
P-0033896-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:   POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL  MET Exon 14 Skipping	yes	unknown					
P-0035774-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:   POSITIVE FOR AN ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL   MET Exon 14 skipping (NM_000245)	yes	unknown					
P-0036639-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:   POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL: MET Exon 14 Skipping (NM_000245)	yes	unknown					
P-0043956-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:    MET Exon14 (NM_000245) Deletion	yes	unknown					
P-0050251-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  MET Exon 14 skipping (NM_000245).	yes	unknown					
P-0070294-T01-IM7	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:     MET exon 14 Skipping (NM_000245).	yes	unknown					
P-0026569-T02-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL: MET exon 14 (NM_000245)  skipping was detected.	yes	unknown					
P-0027554-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0017233-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR AN ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  Transcript with MET Exon 14 skipping Detected	yes	unknown					
P-0033072-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   MET Exon14 (NM_000245) Deletion	yes	unknown					
P-0041210-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORMS IN THE INVESTIGATIONAL PANEL: A deletion of MET Exons 3-8 (NM_000245) was detected.	yes	unknown					
P-0016398-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR AN ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL: Transcript with MET Exon 14 skipping Detected	yes	unknown					
P-0019564-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			DIAGNOSTIC INTERPRETATION:  POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL MET Exon 14 Skipping	yes	unknown					
P-0036746-T01-IM6	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:    MET Exon 14 skipping (NM_000245).	yes	unknown					
P-0063539-T02-IM7	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:     MET exon 14 Skipping (NM_000245).	yes	unknown					
P-0065287-T01-IM7	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:     MET exon 14 Skipping (NM_000245).	yes	unknown					
P-0072035-T01-IM7	SOMATIC	MET									GRCh37				MET-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:     MET exon 14 Skipping (NM_000245).	yes	unknown					
P-0056108-T01-IM6	SOMATIC	MET		7	6	116412457	32547935	Intron of MET(+):414bp after exon 14	Intron of HLA-DRB1(-):88bp after exon 5		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {HLA-DRB1:MET}	PRECISE	5to5	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32547935::chr7:g.116412457)			0	0	0	0	163
P-0059172-T01-IM7	SOMATIC	MET		7	6	116414437	32547148	Intron of MET(+):497bp before exon 15	Intron of HLA-DRB1(-):267bp before exon 6		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {HLA-DRB1:MET}	PRECISE	5to5	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32547148::chr7:g.116414437)			0	0	0	0	26
P-0065465-T01-IM7	SOMATIC	MET		7	6	116412493	32548413	Intron of MET(+):450bp after exon 14	Intron of HLA-DRB1(-):109bp after exon 4		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {HLA-DRB1:MET}	IMPPRECISE	5to5	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32548413::chr7:g.116412493)			0	0	0	0	13
P-0057140-T01-IM6	SOMATIC	MET	CNTNAP2	7	7	116414116	147521398	Intron of MET(+):818bp before exon 15	Intron of CNTNAP2(+):79Kb before exon 14		GRCh37	DELETION	10	22	Protein Fusion: in frame  {MET:CNTNAP2}	PRECISE	3to5	MET (NM_000245) - CNTNAP2 (NM_014141) rearrangement: c.3029-819:MET_c.2099-79259:CNTNAP2del	yes	unknown	31107282	132990	92551	0	24
P-0008915-T01-IM5	SOMATIC	MET	PTPRZ1	7	7	116339315	121516755	Exon 2 of MET(+)	Intron of PTPRZ1(+): 3Kb after exon 1		GRCh37	DUPLICATION	6	6	Protein fusion: mid-exon (PTPRZ1-MET)	PRECISE	5to3	PTPRZ1 (NM_002851) - MET (NM_000245) rearrangement: c.58+3144:PTPRZ1_c.177:METdup	yes	unknown	5177440	58071	47682	0	5
P-0036960-T01-IM6	SOMATIC	MFSD4	TMPRSS2	21	1	42867222	205560208	Intron of TMPRSS2(-):717bp before exon 3	Intron of MFSD4(+):1Kb before exon 7		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {MFSD4:TMPRSS2}	PRECISE	3to3	MFSD4 (NM_181644) - TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q32.1;q22.3)(chr1:g.205560208::chr21:g.42867222)			0	0	0	0	94
P-0055798-T02-IM6	SOMATIC	MGA	WDR25	15	14	41961920	100857180	Exon 2 of MGA(+)	Intron of WDR25(+):9Kb after exon 2		GRCh37	TRANSLOCATION	10	16	Antisense Fusion	PRECISE	3to3	MGA (NM_001164273) rearrangement: t(14;15)(q32.2;q15.1)(chr14:g.100857180::chr15:g.41961920)	yes	unknown	0	0	0	0	16
P-0067331-T02-IM7	SOMATIC	MGA	MGA	15	15	42003361	42017492	Exon 8 of MGA(+)	Intron of MGA(+):2Kb before exon 10		GRCh37	INVERSION	10	7	Antisense Fusion	PRECISE	3to3	MGA (NM_001164273) rearrangement: c.2898_c.3431-1886inv	yes	unknown	14131	2813	3930	0	7
P-0036732-T01-IM6	SOMATIC	MGA		15	15	41989235	42199394	Intron of MGA(+):14bp after exon 3	Intron of EHD4(-):3Kb after exon 5		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	MGA (NM_001164273) Rearrangement: c.2013+14:MGA_chr15:g.42199394del			210159	47171	32875	0	100
P-0036244-T01-IM6	SOMATIC	MGA	MGA	15	15	41971830	42057031	Intron of MGA(+):10Kb after exon 2	Intron of MGA(+):52bp before exon 23		GRCh37	DELETION	10	37	Deletion of 20 exons : out of frame	PRECISE	3to5	MGA (NM_001164273) rearrangement: c.1064+9674_c.7892-53del	yes	unknown	85201	54631	39870	0	39
P-0068634-T01-IM7	SOMATIC	MGA	MGA	15	15	42027291	42052477	Intron of MGA(+):499bp after exon 12	Intron of MGA(+):43bp before exon 20		GRCh37	DELETION	10	18	Deletion of 7 exons : out of frame	PRECISE	3to5	MGA (NM_001164273) rearrangement: c.3916+499_c.7192-44del	yes	unknown	25186	16461	9619	0	18
P-0024266-T01-IM6	SOMATIC	MGA	MGA	15	15	42034324	42052533	Intron of MGA(+):419bp before exon 15	Exon 20 of MGA(+)		GRCh37	DELETION	10	48	Deletion within transcript : mid-exon	PRECISE	3to5	MGA (NM_001164273) Rearrangement : c.4586-420_c.7204del	yes	unknown	18209	23824	16056	0	49
P-0017760-T01-IM6	SOMATIC	MGA	MGA	15	15	42055671	42059193	Intron of MGA(+):1Kb after exon 22	Exon 24 of MGA(+)		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	MGA (NM_001164273) Rearrangement : c.7744+1111_c.8913del	yes	unknown	3522	6400	3031	0	6
P-0058396-T01-IM7	SOMATIC	MGA	MGA	15	15	42005528	42021785	Exon 9 of MGA(+)	Intron of MGA(+):238bp after exon 11		GRCh37	DELETION	10	77	Deletion within transcript : mid-exon	PRECISE	3to5	MGA (NM_001164273) rearrangement: c.3264_c.3843+238del	yes	unknown	16257	3105	2221	0	81
P-0010796-T01-IM5	SOMATIC	MGA	MGA	15	15	42046870	42057226	Intron of MGA(+): 105bp after exon 17	Exon 22 of MGA(+)		GRCh37	DELETION	96	102	Deletion within transcript: mid-exon	PRECISE	3to5	MGA (NM_001164273) rearrangement : c.7139+105_7887del	yes	unknown	10356	17126	11013	0	112
P-0015674-T01-IM6	SOMATIC	MGA		15	15	41990041	41991319	Intron of MGA(+): 820bp after exon 3	Exon 5 of MGA(+)		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	MGA (NM_001164273) rearrangement: 2013+820_c.2150del			1278	3295	1781	0	34
P-0049736-T01-IM6	SOMATIC	MGA	MGA	18	15	10255316	42003270	IGR: 150Kb before LINC01254(-)	Exon 8 of MGA(+)		GRCh37	TRANSLOCATION	10	52	MGA-intragenic	PRECISE	3to5	MGA (NM_001164273) rearrangement: t(15;18)(q15.1;p11.22)(chr15:g.42003270::chr18:g.10255316)	yes	unknown	0	0	0	0	56
P-0072906-T01-IM7	SOMATIC	MGA	DAD1	15	14	42054180	22773516	Intron of MGA(+):132bp after exon 21	IGR: 260Kb before DAD1(-)		GRCh37	TRANSLOCATION	4	5	MGA-intragenic	PRECISE	5to3	MGA (NM_001164273) rearrangement: t(14;15)(q11.2;q15.1)(chr14:g.22773516::chr15:g.42054180)	yes	unknown	0	0	0	0	5
P-0080436-T01-IM7	SOMATIC	MGA	LOC101926964	15	1	42019613	60886415	Intron of MGA(+):9bp after exon 10	IGR: 239Kb before LOC101926964(-)		GRCh37	TRANSLOCATION			MGA-intragenic	PRECISE	3to3	MGA (NM_001164273) rearrangement: t(1;15)(p32.1;q15.1)(chr1:g.60886415::chr15:g.42019613)			0	0	0	0	60
P-0016763-T01-IM6	SOMATIC	MGA		15	15	29907619	42040979	IGR: 84Kb before TJP1(-)	Exon 16 of MGA(+)		GRCh37	INVERSION			MGA-intragenic	PRECISE	5to5	MGA (NM_001164273) rearrangement : g.29907619_c.5357:MGAinv			12133360	122273	97510	0	72
P-0021078-T01-IM6	SOMATIC	MGA		15	15	42021538	51318549	Exon 11 of MGA(+)	IGR: 30Kb before TNFAIP8L3(-)		GRCh37	INVERSION			MGA-intragenic	PRECISE	5to5	MGA (NM_001164273) rearrangement: c.3834:MGA_chr15:g.51318549inv			9297011	178745	129494	0	9
P-0022521-T01-IM6	SOMATIC	MGA		15	15	42032110	52842861	Intron of MGA(+):140bp before exon 14	3-UTR of ARPP19(-):1Kb after coding stop		GRCh37	INVERSION			MGA-intragenic	PRECISE	5to5	MGA (NM_001164273) Rearrangement : c.4435-141:MGA_chr15:g.52842861inv			10810751	152030	113042	0	17
P-0048510-T01-IM6	SOMATIC	MGA		15	15	41775137	42050071	3-UTR of RTF1(+):66Kb after coding stop	Intron of MGA(+):34bp after exon 19		GRCh37	INVERSION			MGA-intragenic	PRECISE	3to3	MGA (NM_001164273) rearrangement: c.7191+34:MGA_chr15:g.41775137inv			274934	34524	56463	0	38
P-0012623-T01-IM5	SOMATIC	MGA	CACNA1B	15	9	42041234	140896610	Intron of MGA(+): 75bp before exon 16	Intron of CACNA1B(+): 5Kb before exon 16		GRCh37	TRANSLOCATION	0	34	Protein fusion: out of frame (CACNA1B-MGA)	IMPRECISE	5to3	CACNA1B (NM_000718) - MGA (NM_001164273) Rearrangement : t(9;15)(q22.3;p11.1)(chr9:g.140896610::chr15:g.42041234)	yes	unknown	0	0	0	0	33
P-0048392-T01-IM6	SOMATIC	MIR1273E	FH	1	1	240716629	241680684	5-UTR of MIR1273E(+):196Kb before coding start	Intron of FH(-):68bp before exon 2		GRCh37	INVERSION	10	17	Transcript Fusion {MIR1273E:FH}	PRECISE	3to3	FH (NM_000143) rearrangement: c.133-68:FH_chr1:g.240716629inv	yes	unknown	964055	10407	16246	0	16
P-0016795-T01-IM6	SOMATIC	MIR940	ETV6								GRCh37				MIR940-ETV6 Fusion - Archer			Also picked by IMPACT POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: MIR940-ETV6 fusion. Note: The rearrangement is an in-frame fusion between genes MIR940 Exon1 (NR_030636) and ETV6 Exon6 (NM_001987).	yes	unknown					
P-0031188-T01-IM6	SOMATIC	MIR99AHG	CTCF	21	16	17465819	67671612	5-UTR of MIR99AHG(+):516Kb before coding start	Exon 12 of CTCF(+)		GRCh37	TRANSLOCATION	10	108	Protein Fusion: mid-exon  {MIR99AHG:CTCF}	PRECISE	3to5	CTCF (NM_006565) rearrangement: t(16;21)(q22.1;q21.1)(chr16:g.:67671612::chr21:g.17465819)	yes	unknown	0	0	0	0	109
P-0016293-T01-IM6	SOMATIC	MITF	MITF	3	3	69845477	70008361	Intron of MITF(+):57Kb after exon 1	Intron of MITF(+):62bp before exon 9		GRCh37	DELETION	10	14	Deletion of 7 exons : in frame	PRECISE	3to5	MITF (NM_198159) rearrangment : c.104+56625_c.1014-63MITFdel	yes	unknown	162884	16286	19530	0	15
P-0048700-T04-IM6	SOMATIC	MITF		3	3	69928381	69930351	Exon 2 of MITF(+)	Intron of MITF(+):2Kb after exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	MITF (NM_198159) rearrangement: c.201_c.354+1817del			1970	1549	952	0	13
P-0069361-T02-IM7	SOMATIC	MITF	IQSEC1	3	3	13036648	69915421	Intron of IQSEC1(-):53Kb before exon 2	Intron of MITF(+):13Kb before exon 2		GRCh37	INVERSION	10	19	Protein Fusion: in frame  {MITF:IQSEC1}	PRECISE	3to3	MITF (NM_198159) - IQSEC1 (NM_001134382) rearrangement: c.105-12864:MITF_c.24-53283:IQSEC1inv	yes	unknown	56878773	373423	392609	0	19
P-0058648-T01-IM7	SOMATIC	MKRN1	BRAF								GRCh37				MKRN1-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: MKRN1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes MKRN1 Exon4 (NM_013446) and BRAF Exon11 (NM_004333).	yes	unknown					
P-0009024-T01-IM5	SOMATIC	MKRN1	BRAF	7	7	140156850	140493485	Intron of MKRN1(-): 184bp before exon 5	Intron of BRAF(-): 623bp after exon 8		GRCh37	DUPLICATION	41	42	Protein fusion: in frame (MKRN1-BRAF)	PRECISE	5to3	MKRN1 (NM_013446) - BRAF (NM_004333) rearrangement: c.772-184G:MKRN1_c.1140+623:BRAFdup	yes	unknown	336635	126273	189888	0	42
P-0070020-T01-IM7	SOMATIC	MLH1	MLH1	3	3	37049065	37050617	Intron of MLH1(+):511bp after exon 5	Intron of MLH1(+):221bp after exon 6		GRCh37	DELETION	10	13	Deletion of 1 exon : out of frame	PRECISE	3to5	MLH1 (NM_000249) rearrangement: c.453+511_c.545+221del	yes	unknown	1552	1785	1430	0	13
P-0046530-T01-IM6	SOMATIC	MLH1	MLH1	19	3	8765208	37038246	IGR: 43Kb before ACTL9(-)	Intron of MLH1(+):46bp after exon 2		GRCh37	TRANSLOCATION	0	27	MLH1-intragenic	IMPPRECISE	5to3	MLH1 (NM_000249) rearrangement: t(3;19)(p22.2;p13.2)(chr3:g.37038246::chr19:g.8765208)	yes	unknown	0	0	0	0	29
P-0070624-T01-IM7	SOMATIC	MLH1	MLH1	11	3	126002352	37090464	IGR: 70Kb before RPUSD4(-)	Exon 18 of MLH1(+)		GRCh37	TRANSLOCATION	10	62	MLH1-intragenic	PRECISE	3to3	MLH1 (NM_000249) rearrangement: t(3;11)(p22.2;q24.2)(chr3:g.37090464::chr11:g.126002352)	yes	unknown	0	0	0	0	61
P-0086393-T01-IM7	SOMATIC	MLH1		3	3	35493405	37038006	IGR: 187Kb before ARPP21(+)	Intron of MLH1(+):103bp before exon 2		GRCh37	DELETION			MLH1-intragenic	PRECISE	3to5	MLH1 (NM_000249) rearrangement: c.117-104:MLH1_chr3:g.35493405del			1544601	10371	3065	0	3
P-0015192-T01-IM6	SOMATIC	MLL	MLL	11	11	118294747	118307513	IGR: 12Kb before MLL(+)	Exon 1 of MLL(+)		GRCh37	DUPLICATION	10	5	MLL-intragenic	PRECISE	5to3	MLL (NM_001197104) rearrangement: c.286_chr11:g.118294747dup	yes	unknown	12766	1542	1730	0	5
P-0003381-T01-IM5	SOMATIC	MLL	USP2	11	11	118353363	119240539	Intron of MLL(+): 153bp after exon 8	Intron of USP2(-): 3Kb after exon 2		GRCh37	INVERSION	12	9	Protein fusion: in frame (MLL-USP2)	PRECISE	3to3		yes	unknown	887176	73757	50996	0	8
P-0013221-T01-IM5	SOMATIC	MLL	PHC2	11	1	118342886	33801002	Exon 3 of MLL(+)	Intron of PHC2(-): 1Kb before exon 9		GRCh37	TRANSLOCATION	44	60	Protein fusion: mid-exon (MLL-PHC2)	PRECISE	3to3	MLL (NM_001197104) - PHC2 (NM_198040) rearrangement: t(1;11)(p35.1;q23.3)(chr1:g.33801002::chr11:g.118342886)	yes	unknown	0	0	0	0	59
P-0015759-T01-IM6	SOMATIC	MLL2	MLL2	12	12	49421887	49423029	Exon 46 of MLL2(-)	Intron of MLL2(-): 10bp before exon 44		GRCh37	DELETION	67	48	Deletion within transcript: mid-exon	PRECISE	3to5	MLL2 (NM_003482) Rearrangement : c.14076-10_c.14420del	yes	unknown	1142	4445	3820	0	48
P-0009943-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49439742	49443940	Exon 18 of MLL2(-)	Exon 11 of MLL2(-)		GRCh37	DUPLICATION	46	49	Duplication within transcript: mid-exon	PRECISE	5to3	MLL2 (NM_003482) rearrangement: c.3431_c.4702dup	yes	unknown	4198	12946	18506	0	48
P-0003132-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49413356	49446690	3-UTR of MLL2(-): 2Kb after coding stop	Intron of MLL2(-): 8bp after exon 8		GRCh37	DELETION	43	27	MLL2-intragenic	PRECISE	3to5		yes	unknown	33334	129232	76138	0	29
P-0014158-T01-IM5	SOMATIC	MLL2		12	12	48956575	49418454	IGR: 5Kb before LALBA(-)	Exon 50 of MLL2(-)		GRCh37	DELETION			MLL2-intragenic	PRECISE	3to5	MLL2 (NM_003482) rearrangement:chr12:g.48956575_c.15959:MLL2del			461879	10190	12029	0	28
P-0011290-T01-IM5	SOMATIC	MLL2	C7orf60	12	7	49420106	112507139	Exon 48 of MLL2(-)	Intron of C7orf60(-): 28Kb after exon 3		GRCh37	TRANSLOCATION	0	50	Protein fusion: mid-exon (MLL2-C7orf60)	IMPRECISE	5to3	MLL2 (NM_003482) - C7orf60 (NM_152556) rearrangement : t(7;12)(q31.1;q13.12)(chr7:g.112507139::chr12:g.49420106)	yes	unknown	0	0	0	0	42
P-0015300-T01-IM6	SOMATIC	MLL3	MLL3	7	7	151878425	151915807	Exon 36 of MLL3(-)	Intron of MLL3(-): 2Kb after exon 23		GRCh37	DELETION	25	8	Deletion within transcript: mid-exon	PRECISE	3to5	MLL3 (NM_170606) rearrangement: c.3712+1801_c.6520del	yes	unknown	37382	27752	19097	0	5
P-0012199-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151866195	152105247	Intron of MLL3(-): 76bp after exon 41	Intron of MLL3(-): 27Kb after exon 1		GRCh37	DUPLICATION	12	7	Duplication of 40 exons: out of frame	PRECISE	5to3	MLL3 (NM_170606) rearrangement: c.161+27464_c.9517+76dup	yes	unknown	239052	96976	105625	0	7
P-0012307-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151874849	151960022	Exon 38 of MLL3(-)	Intron of MLL3(-): 79bp after exon 9		GRCh37	DUPLICATION	25	26	Duplication within transcript: mid-exon	PRECISE	5to3	MLL3 (NM_170606) rearrangement: c.1299+79_c.7689dup	yes	unknown	85173	53097	61363	0	26
P-0009833-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151824753	151846031	IGR: 7Kb before MLL3(-)	Exon 52 of MLL3(-)		GRCh37	DELETION	61	65	MLL3-intragenic	PRECISE	3to5	MLL3 (NM_170606) rearrangement: chr7:g.151824753_c.12981:MLL3del	yes	unknown	21278	24019	20474	0	62
P-0007888-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151867954	151878039	Intron of MLL3(-): 395bp after exon 40	Exon 36 of MLL3(-)		GRCh37	INVERSION	21	20	MLL3-intragenic	PRECISE	3to3	MLL3 (NM_170606) rearrangement : c.6906:MLL3_9453+395inv	yes	unknown	10085	19066	16704	0	18
P-0005220-T01-IM5	SOMATIC	MLL3		7	7	151075514	151878666	3-UTR of NUB1(+): 1Kb after coding stop	Exon 36 of MLL3(-)		GRCh37	INVERSION			MLL3-intragenic	PRECISE	5to5	MLL3 (NM_170606) Rearrangement: g.15107551_c.62794inv			803152	135240	297782	0	125
P-0013729-T01-IM5	SOMATIC	MLL3		7	7	151836335	152256329	Exon 57 of MLL3(-)	IGR: 87Kb before XRCC2(-)		GRCh37	DELETION			MLL3-intragenic	PRECISE	3to5	MLL3 (NM_170606) rearrangement: c.14470:MLL3_chr7:g.152256329del			419994	134340	89412	0	20
P-0014486-T01-IM6	SOMATIC	MLL3		7	7	148881016	151878758	IGR: 900bp after ZNF398(+)	Exon 36 of MLL3(-)		GRCh37	DUPLICATION			MLL3-intragenic	PRECISE	5to3	MLL3 (NM_170606) rearrangement: chr7:g.148881016_c.6187dup			2997742	78163	95575	0	25
P-0015675-T01-IM6	SOMATIC	MLL3		7	7	151860356	159036888	Exon 43 of MLL3(-)	IGR: 216Kb before VIPR2(-)		GRCh37	INVERSION			MLL3-intragenic	PRECISE	5to5	MLL3 (NM_170606) rearrangement: c.10306:MLL3_g.159036888inv			7176532	92808	110574	0	9
P-0014481-T01-IM6	SOMATIC	MLL3		7	7	151874945	152705153	Exon 38 of MLL3(-)	IGR: 248Kb before ACTR3B(+)		GRCh37	DUPLICATION			MLL3-intragenic	PRECISE	5to3	MLL3 (NM_170606) rearrangement: c.7593_chr7:g.152705153dup			830208	70512	69845	0	15
P-0001717-T01-IM3	SOMATIC	MLL3	DPP6	7	7	151864496	154220559	Intron of MLL3(-): 33bp before exon 42	Intron of DPP6(+): 17Kb before exon 4		GRCh37	INVERSION	30	44	Protein fusion: in frame (DPP6-MLL3)	PRECISE	3to3	DPP6 (NM_130797) - MLL3 (NM_170606) inversion: c.458-17058_c.9518-33inv	yes	unknown	2356063	95722	71982	0	44
P-0000521-T01-IM3	SOMATIC	MLL3	PAXIP1	7	7	151879362	154767254	Exon 36 of MLL3(-)	Intron of PAXIP1(-): 152bp after exon 6		GRCh37	DELETION	69	63	Protein fusion: mid-exon (PAXIP1-MLL3)	PRECISE	3to5		yes	unknown	2887892	65405	34050	0	78
P-0055816-T01-IM6	SOMATIC	MLLT1	PPP2R1A	19	19	6260034	52725341	Intron of MLLT1(-):2Kb after exon 3	Intron of PPP2R1A(+):10bp before exon 13		GRCh37	INVERSION	10	16	Protein Fusion: in frame  {MLLT1:PPP2R1A}	PRECISE	5to5	MLLT1 (NM_005934) - PPP2R1A (NM_014225) rearrangement: c.276+2205:MLLT1_c.1519-11:PPP2R1Ainv	yes	unknown	46465307	1089278	928522	0	25
P-0038514-T01-IM6	SOMATIC	MON1A	MST1	3	3	49722907	49954426	Exon 12 of MST1(-)	Intron of MON1A(-):4Kb before exon 2		GRCh37	DELETION			Protein Fusion: mid-exon  {MON1A:MST1}	PRECISE	3to5	MON1A (NM_032355) - MST1 (NM_020998) rearrangement: c.279-3634:MON1A_c.1420:MST1del			231519	91653	93562	0	15
P-0072650-T02-IM7	SOMATIC	MPHOSPH9	ARID1B	12	6	123650954	157511204	Intron of MPHOSPH9(-):247bp after exon 17	Exon 15 of ARID1B(+)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {MPHOSPH9:ARID1B}	PRECISE	5to5	MPHOSPH9 (NM_022782) - ARID1B (NM_020732) rearrangement: t(6;12)(q25.3;q24.31)(chr6:g.157511204::chr12:g.123650954)			0	0	0	0	33
P-0032550-T01-IM6	SOMATIC	MPL		1	1	43805824	43822389	Intron of MPL(+):27bp after exon 5	Promoter of MPL(+):19Kb from tx start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	MPL (NM_005373) rearrangement: c.853+27:MPL_chr1:g.43822389del			16565	12455	14937	0	183
P-0031871-T01-IM6	SOMATIC	MPL		1	1	37865724	43805217	IGR: 55Kb before LINC01137(-)	Exon 4 of MPL(+)		GRCh37	INVERSION			MPL-intragenic	PRECISE	5to5	MPL (NM_005373) rearrangement: c.667:MPL_chr1:g.37865724inv			5939493	28919	39591	0	67
P-0031710-T01-IM6	SOMATIC	MPL	FAF1	1	1	43815119	51229991	Intron of MPL(+):89bp after exon 10	Intron of FAF1(-):20Kb before exon 5		GRCh37	INVERSION	10	3	Protein Fusion: out of frame  {MPL:FAF1}	PRECISE	3to3	MPL (NM_005373) - FAF1 (NM_007051) Rearrangement : c.1565+89:MPL_c.368-19544:FAF1inv	yes	unknown	7414872	86013	37270	0	3
P-0057586-T02-IM6	SOMATIC	MPL	TRIT1	1	1	40332830	43812392	Intron of TRIT1(-):10Kb before exon 2	Intron of MPL(+):70bp before exon 8		GRCh37	INVERSION	5	2	Protein Fusion: out of frame  {MPL:TRIT1}	PRECISE	3to3	MPL (NM_005373) - TRIT1 (NM_017646) rearrangement: c.1166-71:MPL_c.175-9741:TRIT1inv	yes	unknown	3479562	24642	37104	0	2
P-0060828-T01-IM7	SOMATIC	MPL	MPL	1	1	40927229	43804051	Intron of ZFP69B(+):863bp before exon 5	Intron of MPL(+):149bp after exon 2		GRCh37	DUPLICATION	10	20	Protein Fusion: out of frame  {MPL:ZFP69B}	PRECISE	5to3	MPL (NM_005373) rearrangement: c.212+149:MPL_chr1:g.40927229dup	yes	unknown	2876822	12822	20212	0	25
P-0054586-T01-IM6	SOMATIC	MPND	PIK3R2	19	19	4357196	18274011	Intron of MPND(+):53bp before exon 7	Intron of PIK3R2(+):54bp after exon 10		GRCh37	DELETION	10	22	Protein Fusion: in frame  {MPND:PIK3R2}	PRECISE	3to5	MPND (NM_032868) - PIK3R2 (NM_005027) rearrangement: c.997-54:MPND_c.1290+54:PIK3R2del	yes	unknown	13916815	879256	812922	0	23
P-0020962-T01-IM6	SOMATIC	MPRIP	FLCN	17	17	16994136	17122300	Intron of MPRIP(+):13Kb after exon 3	Intron of FLCN(-):32bp after exon 9		GRCh37	DELETION	10	9	Antisense Fusion	PRECISE	3to5	FLCN (NM_144997) rearrangement: g.16994136_c.1062+33del	yes	unknown	128164	8703	6956	0	9
P-0016627-T01-IM6	SOMATIC	MRE11A		11	11	94211999	113555650	Exon 6 of MRE11A(-)	Promoter of TMPRSS5(-):3Kb from tx start		GRCh37	INVERSION			MRE11A-intragenic	PRECISE	3to3	MRE11A (NM_005591) rearrangement: c.446_g.113555650inv			19343651	138799	185963	0	252
P-0087922-T01-IM7	SOMATIC	MRE11A		11	9	94162804	1613673	Intron of MRE11A(-):272bp after exon 19	IGR: 402Kb before SMARCA2(+)		GRCh37	TRANSLOCATION			MRE11A-intragenic	PRECISE	5to5	MRE11A (NM_005591) rearrangement: t(9;11)(p24.3;q21)(chr9:g.1613673::chr11:g.94162804)			0	0	0	0	8
P-0053343-T01-IM6	SOMATIC	MRE11A		11	11	94170357	99101479	Exon 17 of MRE11A(-)	5-UTR of CNTN5(+):325Kb before coding start		GRCh37	INVERSION			Protein Fusion: mid-exon  {MRE11A:CNTN5}	PRECISE	5to5	MRE11A (NM_005591) rearrangement: c.1912:MRE11A_chr11:g.99101479inv			4931122	32271	61080	0	14
P-0024309-T01-IM6	SOMATIC	MRE11A	RTN4RL2	11	11	57242231	94192597	Intron of RTN4RL2(+):1Kb before exon 3	Exon 13 of MRE11A(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {MRE11A:RTN4RL2}	PRECISE	5to5	MRE11A (NM_005591) - RTN4RL2 (NM_178570) rearrangement: c.1477:MRE11A_c.514-1404:RTN4RL2inv			36950366	230511	375427	0	28
P-0086412-T01-IM7	SOMATIC	MREG	ERBB4	2	2	212248503	216859552	Exon 28 of ERBB4(-)	Intron of MREG(-):1Kb after exon 2		GRCh37	DELETION			Protein Fusion: mid-exon  {MREG:ERBB4}	PRECISE	3to5	MREG (NM_018000) - ERBB4 (NM_005235) rearrangement: c.255+1477:MREG_c.3764:ERBB4del			4611049	60433	44999	0	9
P-0058939-T02-IM7	SOMATIC	MSH2	SPAG16	2	2	47662359	215170312	Intron of MSH2(+):5Kb after exon 7	Intron of SPAG16(+):105Kb before exon 16		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	3to3	MSH2 (NM_000251) rearrangement: c.1276+5279:MSH2_chr2:g.215170312inv	yes	unknown	167507953	867347	1004690	0	17
P-0060952-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47636258	47643303	Intron of MSH2(+):564bp after exon 2	Intron of MSH2(+):131bp before exon 6		GRCh37	DELETION	0	11	Deletion of 3 exons : in frame	IMPPRECISE	3to5	MSH2 (NM_000251) rearrangement: c.366+564_c.943-132del	yes	unknown	7045	4668	3534	1	10
P-0076402-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47703288	47710916	Intron of MSH2(+):217bp before exon 13	Promoter of MSH2(+):81Kb from tx start		GRCh37	DELETION	10	9	Deletion within transcript	PRECISE	3to5	MSH2 (NM_000251) rearrangement: c.2006-218:MSH2_chr2:g.47710916del	yes	unknown	7628	5669	12083	0	9
P-0025047-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47678373	47703530	Intron of MSH2(+):6Kb after exon 8	Exon 13 of MSH2(+)		GRCh37	DELETION	10	71	Deletion within transcript : mid-exon	PRECISE	3to5	MSH2 (NM_000251) Rearrangement : c.1386+5577_c.2030del	yes	unknown	25157	4001	4466	0	77
P-0033848-T01-IM6	SOMATIC	MSH2		2	2	47705656	47707833	Exon 14 of MSH2(+)	Intron of MSH2(+):1bp before exon 15		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	MSH2 (NM_000251) rearrangement: c.2456_c.2459-2del			2177	679	1022	0	12
P-0014756-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47631836	47639595	Intron of MSH2(+): 1Kb after exon 1	Exon 4 of MSH2(+)		GRCh37	DELETION	57	80	Deletion within transcript: mid-exon	PRECISE	3to5	MSH2 (NM_000251) rearrangement: c.211+1295_c.688del	yes	unknown	7759	5338	1110	1	76
P-0071703-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47631901	47669579	Intron of MSH2(+):1Kb after exon 1	Intron of MSH2(+):3Kb before exon 8		GRCh37	DUPLICATION	0	14	Duplication of 6 exons : in frame	IMPPRECISE	5to3	MSH2 (NM_000251) rearrangement: c.211+1360_c.1277-3108dup	yes	unknown	37678	9338	20674	0	16
P-0060263-T01-IM7	SOMATIC	MSH2	MIR5192	2	2	47675336	62488800	Intron of MSH2(+):3Kb after exon 8	IGR: 56Kb before MIR5192(+)		GRCh37	INVERSION	10	25	MSH2-intragenic	PRECISE	3to3	MSH2 (NM_000251) rearrangement: c.1386+2540:MSH2_chr2:g.62488800inv	yes	unknown	14813464	150235	182716	0	25
P-0042741-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47636574	47639482	Intron of MSH2(+):658bp before exon 3	Intron of MSH2(+):70bp before exon 4		GRCh37	INVERSION	3	4	MSH2-intragenic	PRECISE	5to5	MSH2 (NM_000251) rearrangement: c.367-659_c.646-71inv	yes	unknown	2908	2047	2143	0	4
P-0062080-T01-IM7	SOMATIC	MSH2	MSH2	2	2	43841219	47662245	IGR: 23Kb before PLEKHH2(+)	Intron of MSH2(+):5Kb after exon 7		GRCh37	INVERSION	10	51	MSH2-intragenic	PRECISE	3to3	MSH2 (NM_000251) rearrangement: c.1276+5165:MSH2_chr2:g.43841219inv	yes	unknown	3821026	76292	105303	0	51
P-0045959-T01-IM6	SOMATIC	MSH3	MSH3	5	5	79966739	79968497	Intron of MSH3(+):611bp after exon 4	Intron of MSH3(+):62bp before exon 6		GRCh37	DELETION	10	14	Deletion of 1 exon : in frame	PRECISE	3to5	MSH3 (NM_002439) rearrangement: c.792+611_c.910-63del	yes	unknown	1758	1260	1208	0	15
P-0038166-T01-IM6	SOMATIC	MSH3	MSH3	5	5	79970823	80037266	Exon 7 of MSH3(+)	Intron of MSH3(+):16bp before exon 11		GRCh37	INVERSION	10	17	MSH3-intragenic	PRECISE	5to5	MSH3 (NM_002439) rearrangement: c.1049_c.1569-17inv	yes	unknown	66443	6148	7226	0	17
P-0039473-T01-IM6	SOMATIC	MSH3	MSH3	5	5	80004830	80083252	Intron of MSH3(+):16Kb before exon 9	Intron of MSH3(+):131bp before exon 18		GRCh37	INVERSION	10	13	MSH3-intragenic	PRECISE	5to5	MSH3 (NM_002439) rearrangement: c.1341-16442_c.2436-132inv	yes	unknown	78422	10304	8351	0	14
P-0070382-T02-IM7	SOMATIC	MSH3	MSH3	5	5	62007023	79953677	IGR: 132Kb before LRRC70(+)	Intron of MSH3(+):1Kb after exon 2		GRCh37	INVERSION	6	3	MSH3-intragenic	PRECISE	3to3	MSH3 (NM_002439) rearrangement: c.358+1327:MSH3_chr5:g.62007023inv	yes	unknown	17946654	68148	152821	0	4
P-0044901-T01-IM6	SOMATIC	MSH3		8	5	5131831	80024703	IGR: 1Mb before LOC100287015(-)	Exon 10 of MSH3(+)		GRCh37	TRANSLOCATION			MSH3-intragenic	PRECISE	5to5	MSH3 (NM_002439) rearrangement: t(5;8)(q14.1;p23.2)(chr5:g.80024703::chr8:g.5131831)			0	0	0	0	37
P-0083684-T01-IM7	SOMATIC	MSH3		5	5	80064692	80180754	Exon 15 of MSH3(+)	IGR: 63Kb before RASGRF2-AS1(-)		GRCh37	INVERSION			MSH3-intragenic	PRECISE	3to3	MSH3 (NM_002439) rearrangement: c.2123:MSH3_chr5:g.80180754inv			116062	14715	15336	0	7
P-0086116-T01-IM7	SOMATIC	MSH3	SEMA5A	5	5	9171864	79961338	Intron of SEMA5A(-):17Kb before exon 12	Intron of MSH3(+):156bp after exon 3		GRCh37	INVERSION			Protein Fusion: out of frame  {MSH3:SEMA5A}	PRECISE	3to3	MSH3 (NM_002439) - SEMA5A (NM_003966) rearrangement: c.579+156:MSH3_c.1274-17057:SEMA5Ainv			70789474	248368	597968	0	30
P-0072091-T01-IM7	SOMATIC	MSH3	SPRY4	5	5	79952187	141695648	Intron of MSH3(+):42bp before exon 2	Intron of SPRY4(-):928bp before exon 3		GRCh37	INVERSION	10	22	Protein Fusion: out of frame  {SPRY4:MSH3}	PRECISE	5to5	MSH3 (NM_002439) rearrangement: c.238-43:MSH3_chr5:g.141695648inv	yes	unknown	61743461	390178	491836	0	25
P-0073056-T01-IM7	SOMATIC	MSH6	FBXO11	2	2	48026865	48055833	Exon 4 of MSH6(+)	Intron of FBXO11(-):4Kb after exon 11		GRCh37	DELETION	10	33	Antisense Fusion	PRECISE	3to5	MSH6 (NM_000179) rearrangement: c.1743:MSH6_chr2:g.48055833del	yes	unknown	28968	10028	14339	0	35
P-0032230-T01-IM6	SOMATIC	MSH6		2	2	48018111	48090312	Exon 2 of MSH6(+)	Intron of FBXO11(-):23Kb before exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	MSH6 (NM_000179) rearrangement: c.306:MSH6_chr2:g.48090312del			72201	19549	24389	0	25
P-0066221-T01-IM7	SOMATIC	MSH6	MSH6	2	2	48020188	48033217	Intron of MSH6(+):2Kb after exon 2	Intron of MSH6(+):125bp before exon 8		GRCh37	DELETION	0	19	Deletion of 5 exons : in frame	IMPPRECISE	3to5	MSH6 (NM_000179) rearrangement: c.457+1926_c.3647-126del	yes	unknown	13029	23510	40738	0	20
P-0061330-T01-IM7	SOMATIC	MSH6	MSH6	4	2	35178140	48028292	IGR: 889Kb before ARAP2(-)	Exon 4 of MSH6(+)		GRCh37	TRANSLOCATION	10	15	MSH6-intragenic	PRECISE	3to5	MSH6 (NM_000179) rearrangement: t(2;4)(p16.3;p15.1)(chr2:g.48028292::chr4:g.35178140)	yes	unknown	0	0	0	0	15
P-0009301-T01-IM5	SOMATIC	MSH6		2	2	13175937	48026326	IGR: 319Kb before TRIB2(+)	Exon 4 of MSH6(+)		GRCh37	INVERSION			MSH6-intragenic	PRECISE	5to5	MSH6 (NM_000179) rearrangement: chr2:g.13175937_c.1204inv			34850389	331025	302292	0	15
P-0020231-T01-IM6	SOMATIC	MSH6		2	2	47947631	48026454	IGR: 63Kb before MSH6(+)	Exon 4 of MSH6(+)		GRCh37	DELETION			MSH6-intragenic	PRECISE	3to5	MSH6 (NM_000179) rearrangement: chr2:g.47947631_c.1332:MSH6del			78823	11040	12118	0	5
P-0028833-T01-IM6	SOMATIC	MSI2	MSI2	17	17	55308451	55335639	IGR: 25Kb before MSI2(+)	Exon 4 of MSI2(+)		GRCh37	DUPLICATION	10	8	MSI2-intragenic	PRECISE	5to3	MSI2 (NM_138962) rearrangement: c.194_chr17:g.55308451dup	yes	unknown	27188	2870	6336	0	8
P-0068902-T02-IM7	SOMATIC	MSI2	KCNT2	17	1	55693541	194925163	Intron of MSI2(+):96bp after exon 9	IGR: 1Mb before KCNT2(-)		GRCh37	TRANSLOCATION	10	26	MSI2-intragenic	PRECISE	3to5	MSI2 (NM_138962) rearrangement: t(1;17)(q31.3;q22)(chr1:g.194925163::chr17:g.55693541)	yes	unknown	0	0	0	0	26
P-0067780-T02-IM7	SOMATIC	MSI2	RAD51C	17	17	55335591	56776479	Intron of MSI2(+):39bp before exon 4	Intron of RAD51C(+):2Kb after exon 3		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {MSI2:RAD51C}	PRECISE	3to5	MSI2 (NM_138962) - RAD51C (NM_058216) rearrangement: c.186-40:MSI2_c.571+2259:RAD51Cdel	yes	unknown	1440888	36861	139719	0	7
P-0054809-T01-IM6	SOMATIC	MSRA	DNMT3B	20	8	31388627	10035827	Intron of DNMT3B(+):13bp before exon 18	Intron of MSRA(+):30Kb before exon 2		GRCh37	TRANSLOCATION	10	6	Protein Fusion: out of frame  {MSRA:DNMT3B}	PRECISE	5to3	MSRA (NM_012331) - DNMT3B (NM_175849) Rearrangement :  t (8;20) (p23.1;q11.21) (chr8:g.10035827::chr20:g.31388627)	yes	unknown	0	0	0	0	6
P-0019434-T01-IM6	SOMATIC	MST1		3	3	49723504	66565721	Exon 9 of MST1(-)	IGR: 137Kb before LRIG1(-)		GRCh37	INVERSION			MST1-intragenic	PRECISE	5to5	MST1 (NM_020998) rearrangement: c.1138_chr3:g.66565721inv			16842217	128848	50964	0	8
P-0065588-T01-IM7	SOMATIC	MST1R	MST1R	3	3	49940457	49941433	Exon 1 of MST1R(-)	Promoter of MST1R(-):17Kb from tx start		GRCh37	DELETION	5	3	Deletion within transcript : mid-exon	PRECISE	3to5	MST1R (NM_002447) rearrangement: c.586:MST1R_chr3:g.49941433del	yes	unknown	976	3689	3977	0	3
P-0016785-T01-IM6	SOMATIC	MST1R	IQCJ	3	3	49933281	159356211	Exon 12 of MST1R(-)	Intron of SCHIP1(+):126Kb before exon 2		GRCh37	DELETION			MST1R-IQCJ Fusion	PRECISE	3to5	MST1R (NM_002447) - IQCJ-SCHIP1 (NM_001197113) rearrangement: c.2829:MST1R_c.292-12602:IQCJ-SCHIP1del			109422930	407047	639762	0	35
P-0030626-T01-IM6	SOMATIC	MST1R	PBRM1	3	3	49933573	52648949	Intron of MST1R(-):33bp before exon 11	Intron of PBRM1(-):417bp after exon 16		GRCh37	DUPLICATION			Protein Fusion: out of frame  {MST1R:PBRM1}	PRECISE	5to3	MST1R (NM_002447) - PBRM1 (NM_018313) rearrangement: c.2650-33_c.1924+418dup			2715376	68043	71224	0	23
P-0017031-T01-IM6	SOMATIC	MT1H	NUP93	16	16	56702977	56839602	Promoter of MT1H(+):748bp from tx start	Intron of NUP93(+):58bp after exon 5		GRCh37	DUPLICATION	10	7	Transcript Fusion {NUP93:MT1H}	PRECISE	5to3	NUP93 (NM_014669) - MT1H (NM_005951) rearrangement: c.489+58:NUP93_c.-820:MT1Hdup	yes	unknown	136625	4191	8746	0	7
P-0003402-T01-IM5	SOMATIC	MTAP	CDKN2A	9	9	21883147	21994235	IGR: 17Kb after MTAP(+)	Exon 1 of CDKN2A(-)		GRCh37	DELETION	60	28	CDKN2A-MTAP fusion	PRECISE	3to5		yes	unknown	111088	5141	2453	0	30
P-0081667-T01-IM7	SOMATIC	MTAP		9	9	21854756	21857029	Exon 6 of MTAP(+)	Intron of MTAP(+):2Kb after exon 6		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	MTAP (NM_002451) rearrangement: c.577_c.690+2160dup			2273	976	1409	0	13
P-0088650-T02-IM7	SOMATIC	MTAP		9	9	21859315	32533642	Exon 7 of MTAP(+)	IGR: 7Kb before TOPORS(-)		GRCh37	INVERSION			MTAP-intragenic	PRECISE	3to3	MTAP (NM_002451): c.704:MTAP_chr9:g.32533642inv			10674327	79531	71384	0	60
P-0002886-T01-IM3	SOMATIC	MTAP	CDKN2B	9	9	21860421	22008292	Intron of MTAP(+): 997bp after exon 7	Intron of CDKN2B(-): 505bp after exon 1		GRCh37	INVERSION	32	16	Protein fusion: in frame (MTAP-CDKN2B)	PRECISE	3to3		yes	unknown	147871	19377	12533	0	16
P-0012993-T01-IM5	SOMATIC	MTMR3	ERBB3	22	12	30290490	56487886	5-UTR of MTMR3(+): 77Kb before coding start	Exon 14 of ERBB3(+)		GRCh37	TRANSLOCATION	11	23	Protein fusion: mid-exon (MTMR3-ERBB3)	PRECISE	3to5	MTMR3 (NM_021090) - ERBB3 (NM_001982) Rearrangement :  t(12;22)(q13.3;q12.2)(chr12:g.56487886::chr22:g.30290490)	yes	unknown	0	0	0	0	22
P-0036672-T02-IM6	SOMATIC	MTOR	BAI2	1	1	11181865	32222726	Intron of MTOR(-):170bp after exon 48	Intron of BAI2(-):75bp after exon 3		GRCh37	INVERSION	10	9	Antisense Fusion	PRECISE	5to5	MTOR (NM_004958) rearrangement: c.6810+171:MTOR_chr1:g.32222726inv	yes	unknown	21040861	240350	429857	0	10
P-0039784-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11273047	11275257	Intron of MTOR(-):82bp before exon 22	Intron of MTOR(-):947bp after exon 20		GRCh37	DELETION	9	7	Deletion of 1 exon : in frame	PRECISE	3to5	MTOR (NM_004958) rearrangement: c.3117+948_c.3286-82del	yes	unknown	2210	1516	1785	0	7
P-0076922-T01-IM7	SOMATIC	MTOR	MTOR	1	1	11202957	11298637	Intron of MTOR(-):2Kb after exon 34	Exon 12 of MTOR(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	MTOR (NM_004958) rearrangement: c.1824_c.4872+1748del	yes	unknown	95680	21878	36195	0	26
P-0054356-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11190749	11239532	Exon 39 of MTOR(-)	Intron of MTOR(-):12Kb before exon 29		GRCh37	DUPLICATION	10	35	Duplication within transcript : mid-exon	PRECISE	5to3	MTOR (NM_004958) rearrangement: c.4254-11958_c.5450dup	yes	unknown	48783	14128	28793	0	36
P-0048711-T01-IM6	SOMATIC	MTOR	MTOR	2	1	184784500	11181415	IGR: 679Kb before ZNF804A(+)	Exon 49 of MTOR(-)		GRCh37	TRANSLOCATION	10	6	MTOR-intragenic	PRECISE	5to5	MTOR (NM_004958) rearrangement: t(1;2)(p36.22;q32.1)(chr1:g.11181415::chr2:g.184784500)	yes	unknown	0	0	0	0	6
P-0057427-T02-IM6	SOMATIC	MTOR	MTOR	13	1	35860916	11182279	Intron of NBEA(+):4Kb before exon 35	Intron of MTOR(-):96bp before exon 48		GRCh37	TRANSLOCATION	10	62	MTOR-intragenic	PRECISE	5to3	MTOR (NM_004958) rearrangement: t(1;13)(p36.22;q13.3)(chr1:g.11182279::chr13:g.35860916)	yes	unknown	0	0	0	0	65
P-0007638-T01-IM5	SOMATIC	MTOR		1	1	4431259	11205042	IGR: 41Kb before LOC284661(+)	Exon 33 of MTOR(-)		GRCh37	INVERSION			MTOR-intragenic	PRECISE	5to5	MTOR (NM_004958) Rearrangement : chr1:g.4431259_c.4747:MTORinv			6773783	125354	110054	0	24
P-0019552-T01-IM6	SOMATIC	MTOR		1	1	10998818	11182082	IGR: 8Kb before C1orf127(-)	Exon 48 of MTOR(-)		GRCh37	DUPLICATION			MTOR-intragenic	PRECISE	5to3	MTOR (NM_004958) Rearrangement : chr1:g.10998818_c.6764:MTOR			183264	14530	15965	0	7
P-0027811-T01-IM6	SOMATIC	MTOR		1	1	11272555	42333975	Intron of MTOR(-):24bp before exon 23	3-UTR of HIVEP3(-):168Kb after coding stop		GRCh37	INVERSION			MTOR-intragenic	PRECISE	3to3	MTOR (NM_004958) rearrangement: c.3399-24:MTOR_chr1:g.42333975inv			31061420	317774	455290	0	13
P-0002001-T01-IM3	SOMATIC	MTOR	RGL1	1	1	11290916	183668918	Intron of MTOR(-): 66bp after exon 18	5-UTR of RGL1(+): 42Kb before coding start		GRCh37	INVERSION	17	8	Transcript fusion (MTOR-RGL1)	PRECISE	5to5	MTOR (NM_004958) - RGL1 (NM_015149) inversion:  c.2779+66:MTOR_c.-32-42343:RGL1inv	yes	unknown	172378002	580977	632716	0	8
P-0041420-T01-IM6	SOMATIC	MTUS2	BRCA2	13	13	29930033	32937544	Intron of MTUS2(+):3Kb before exon 6	Exon 18 of BRCA2(+)		GRCh37	DELETION	10	25	Protein Fusion: mid-exon  {MTUS2:BRCA2}	PRECISE	3to5	MTUS2 (NM_001033602) - BRCA2 (NM_000059) rearrangement: c.2936-3366:MTUS2_c.8205:BRCA2del	yes	unknown	3007511	48478	89505	0	25
P-0027353-T01-IM6	SOMATIC	MUTYH		1	1	45799091	144950020	Exon 3 of MUTYH(-)	Intron of NBPF20(+):125Kb after exon 53		GRCh37	DELETION			MUTYH-intragenic	PRECISE	3to5	MUTYH (NM_001128425) rearrangement: c.342:MUTYH_g.144950020del			99150929	278825	460192	0	26
P-0005832-T01-IM5	SOMATIC	MUTYH	OSBPL9	1	1	45797001	52181050	Exon 14 of MUTYH(-)	Intron of OSBPL9(+): 1Kb after exon 4		GRCh37	INVERSION	10	5	Protein fusion: mid-exon (MUTYH-OSBPL9)	PRECISE	5to5	MUTYH (:NM_001048172) - OSBPL9 (NM_148909) rearrangement event : c.1248:MUTYH_c.318+1299:OSBPL9inv	yes	unknown	6384049	64400	92142	0	5
P-0030872-T01-IM6	SOMATIC	MX1	TMPRSS2	21	21	42821844	42872650	Intron of MX1(+):4Kb after exon 9	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION			Protein Fusion: in frame  {MX1:TMPRSS2}	PRECISE	3to3	MX1 (NM_001178046) - TMPRSS2 (NM_001135099) rearrangement: c.1432+622:MX1_c.56-2534:TMPRSS2inv			50806	45819	71106	0	25
P-0003395-T01-IM5	SOMATIC	MX1	TMPRSS2	21	21	42831327	42840334	IGR: 187bp after MX1(+)	Exon 12 of TMPRSS2(-)		GRCh37	DELETION	42	22	TMPRSS2-MX1 fusion	PRECISE	3to5		yes	unknown	9007	3095	1494	0	25
P-0047640-T02-IM6	SOMATIC	MYC	MYC	9	8	122069207	128750568	Intron of BRINP1(-):6Kb after exon 2	Exon 2 of MYC(+)		GRCh37	TRANSLOCATION	10	113	Antisense Fusion	PRECISE	5to3	MYC (NM_002467) rearrangement: t(8;9)(q24.21;q33.1)(chr8:g.128750568::chr9:g.122069207)	yes	unknown	0	0	0	0	150
P-0045302-T03-IM6	SOMATIC	MYC	MYC	8	8	128748859	128750220	Exon 1 of MYC(+)	Intron of MYC(+):273bp before exon 2		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	MYC (NM_002467) rearrangement: c.20_c.31-274del	yes	unknown	1361	327	482	0	10
P-0054264-T01-IM6	SOMATIC	MYC	MYC	8	8	128752660	128753190	Exon 3 of MYC(+)	Exon 3 of MYC(+)		GRCh37	DUPLICATION	10	117	Duplication within transcript : mid-exon	PRECISE	5to3	MYC (NM_002467) rearrangement: c.821_c.1351dup	yes	unknown	530	1848	4036	0	121
P-0012855-T01-IM5	SOMATIC	MYC	MYC	8	8	128752944	128755173	Exon 3 of MYC(+)	IGR: 7Kb before MYC(+)		GRCh37	DELETION	29	19	MYC-intragenic	PRECISE	3to5	MYC (NM_002467) rearrangement: c.1105_c.*1969del	yes	unknown	2229	3504	5270	0	18
P-0001760-T01-IM3	SOMATIC	MYC		8	3	128751033	46098474	Exon 2 of MYC(+)	IGR: 36Kb before XCR1(-)		GRCh37	TRANSLOCATION			MYC-intragenic	PRECISE	5to5	MYC (NM_002467) Translocation:  t(8;3)(q24.21;p21.31)(chr8:g.128751033::chr3:g.46098474)			0	0	0	0	26
P-0012134-T01-IM5	SOMATIC	MYC		8	8	128753084	132081862	Exon 3 of MYC(+)	IGR: 29Kb after ADCY8(-)		GRCh37	DELETION			MYC-intragenic	PRECISE	3to5	MYC (NM_002467) rearrangement: c.1245_chr8:g.132081862del			3328778	6193	11413	0	48
P-0077939-T01-IM7	SOMATIC	MYC	ACPP	8	3	128747976	132047712	Promoter of MYC(+):338bp from tx start	Intron of ACPP(+):506bp after exon 2		GRCh37	TRANSLOCATION	10	45	Transcript Fusion {ACPP:MYC}	PRECISE	5to3	MYC (NM_002467) rearrangement: t(3;8)(q22.1;q24.21)(chr3:g.132047712::chr8:g.128747976)	yes	unknown	0	0	0	0	45
P-0070121-T02-IM7	SOMATIC	MYD88		3	3	38173493	38182679	Exon 4 of ACAA1(-)	Exon 5 of MYD88(+)		GRCh37	DELETION			MYD88-intragenic	PRECISE	3to5	MYD88 (NM_002468) rearrangement: c.832:MYD88_chr3:g.38173493del			9186	7476	13109	0	13
P-0015445-T01-IM6	SOMATIC	MYD88	ROBO2	3	3	38181690	77692981	Intron of MYD88(+): 189bp before exon 3	Intron of ROBO2(+): 874bp before exon 25		GRCh37	DELETION	5	6	Protein fusion: in frame (MYD88-ROBO2)	PRECISE	3to5	MYD88 (NM_002468) - ROBO2 (NM_002942) rearrangement: c.503-189:MYD88_c.3935-874:ROBO2del	yes	unknown	39511291	362340	309335	0	4
P-0005931-T01-IM5	SOMATIC	MYD88	OXSR1	3	3	38181527	38217057	Intron of MYD88(+): 38bp after exon 2	Intron of OXSR1(+): 7Kb before exon 2		GRCh37	DUPLICATION	13	6	Protein fusion: in frame (OXSR1-MYD88)	PRECISE	5to3	OXSR1 (NM_005109) - MYD88 (NM_002468)   Rearrangement :  c.71-7437:OXSR1_c.502+38:MYD88dup	yes	unknown	35530	5643	5848	0	6
P-0005034-T01-IM5	SOMATIC	MYH14	POLD1	19	19	50806701	50906311	Intron of MYH14(+): 2Kb after exon 39	Exon 9 of POLD1(+)		GRCh37	INVERSION			Antisense fusion	PRECISE	3to3	MYH14 (NM_001145809) - POLD1 (NM_002691) rearrangement : c.5678+1575:MYH14_c.972:POLD1inv			99610	22000	19406	0	10
P-0027989-T01-IM6	SOMATIC	MYH9	ROS1								GRCh37				MYH9-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: MYH9-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes MYH9 Exon40 (NM_002473) and ROS1 Exon36 (NM_002944).	yes	unknown					
P-0076438-T01-IM7	SOMATIC	MYL6	ERBB3	12	12	56482319	56554959	Intron of ERBB3(+):7bp before exon 8	Intron of MYL6(+):211bp before exon 6		GRCh37	DUPLICATION	10	27	Protein Fusion: in frame  {MYL6:ERBB3}	PRECISE	5to3	MYL6 (NM_079423) - ERBB3 (NM_001982) rearrangement: c.428-212:MYL6_c.875-8:ERBB3dup	yes	unknown	72640	30265	49027	0	28
P-0008795-T01-IM5	SOMATIC	MYO16	IRS2	13	13	109420518	110419460	Intron of MYO16(+): 17Kb before exon 5	Intron of IRS2(-): 11Kb before exon 2		GRCh37	INVERSION			Protein fusion: out of frame (MYO16-IRS2)	PRECISE	3to3	MYO16 (NM_015011) - IRS2 (NM_003749) rearrangement : c.442-17465:MYO16_c.4013-10805:IRS2inv			998942	4975	124692	0	26
P-0069959-T01-IM7	SOMATIC	MYO18A	STAT3	17	17	27468403	40475357	Intron of MYO18A(-):19Kb before exon 3	Exon 19 of STAT3(-)		GRCh37	DUPLICATION	10	13	Protein Fusion: mid-exon  {MYO18A:STAT3}	PRECISE	5to3	MYO18A (NM_078471) - STAT3 (NM_139276) rearrangement: c.1000-19132:MYO18A_c.1669:STAT3dup	yes	unknown	13006954	351781	416608	0	13
P-0069201-T01-IM7	SOMATIC	MYO1D	ERBB2	17	17	31091921	37858599	Exon 8 of MYO1D(-)	Intron of ERBB2(+):2Kb after exon 1		GRCh37	INVERSION	8	12	Protein Fusion: mid-exon  {MYO1D:ERBB2}	PRECISE	5to5	MYO1D (NM_015194) - ERBB2 (NM_004448) fusion: c.1010:MYO1D_c.73+2035:ERBB2inv	yes	unknown	6766678	64080	148894	0	12
P-0003381-T01-IM5	SOMATIC	MYOD1	LRRC4C	11	11	17741521	38708506	Exon 1 of MYOD1(+)	IGR: 1Mb before LRRC4C(-)		GRCh37	INVERSION	44	88	LRRC4C-MYOD1 fusion	PRECISE	3to3		yes	unknown	20966985	37870	36618	0	87
P-0003381-T01-IM5	SOMATIC	MYOD1	INCENP	11	11	17742745	61911103	Intron of MYOD1(+): 57bp before exon 3	Intron of INCENP(+): 1Kb before exon 11		GRCh37	DUPLICATION	34	36	Protein fusion: out of frame (INCENP-MYOD1)	PRECISE	5to3		yes	unknown	44168358	58860	59022	0	36
P-0009190-T01-IM5	SOMATIC	NAALADL2	PIK3CA	3	3	174718565	178916718	Intron of NAALADL2(+): 96Kb before exon 2	Exon 2 of PIK3CA(+)		GRCh37	DELETION	68	51	Protein fusion: mid-exon (NAALADL2-PIK3CA)	PRECISE	3to5	NAALADL2 (NM_207015) - PIK3CA (NM_006218)  rearrangement :  c.44-96015:NAALADL2_c.105:PIK3CAdel	yes	unknown	4198153	7600	7488	0	48
P-0011161-T01-IM5	SOMATIC	NAB2	MGAT4C	12	12	57486534	87188994	Intron of NAB2(+): 166bp before exon 4	5-UTR of MGAT4C(-): 806Kb before coding start		GRCh37	DELETION	53	46	Antisense fusion	PRECISE	3to5	NAB2 (NM_005967) rearrangement: c.1092-166:NAB2_chr12:g.87188994del	yes	unknown	29702460	196426	287340	0	44
P-0022006-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486495	57487647	Intron of NAB2(+):131bp after exon 3	Intron of NAB2(+):266bp after exon 6		GRCh37	INVERSION	7	2	Antisense Fusion	PRECISE	3to3	NAB2 (NM_005967) rearrangement: c.1091+131_c.1468+266inv	yes	unknown	1152	5516	3076	0	2
P-0023838-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486523	57487653	Intron of NAB2(+):159bp after exon 3	Intron of NAB2(+):272bp after exon 6		GRCh37	INVERSION	6	2	NAB2-intragenic	PRECISE	5to5	NAB2 (NM_005967) rearrangement: c.1091+159_c.1468+272inv	yes	unknown	1130	4170	4327	0	2
P-0050309-T01-IM6	SOMATIC	NAB2	GEN1	12	2	57487915	17948133	Intron of NAB2(+):479bp before exon 7	Intron of GEN1(+):177bp after exon 5		GRCh37	TRANSLOCATION	0	257	NAB2-intragenic	IMPPRECISE	5to5	NAB2 (NM_005967) rearrangement: t(2;12)(p24.2;q13.3)(chr2:g.17948133::chr12:g.57487915)	yes	unknown	0	0	0	0	366
P-0013379-T02-IM7	SOMATIC	NAB2	NAB2	19	12	31230276	57486174	IGR: 367Kb before ZNF536(+)	Intron of NAB2(+):56bp before exon 3		GRCh37	TRANSLOCATION	10	66	NAB2-intragenic	PRECISE	5to5	NAB2 (NM_005967) rearrangement: t(12;19)(q13.3;q12)(chr12:g.57486174::chr19:g.31230276)	yes	unknown	0	0	0	0	85
P-0070307-T02-IM7	SOMATIC	NAB2	PAM	12	5	57486920	102143306	Exon 5 of NAB2(+)	IGR: 58Kb before PAM(+)		GRCh37	TRANSLOCATION	10	18	NAB2-intragenic	PRECISE	5to3	NAB2 (NM_005967) rearrangement: t(5;12)(q21.1;q13.3)(chr5:g.102143306::chr12:g.57486920)	yes	unknown	0	0	0	1	17
P-0062348-T01-IM7	SOMATIC	NAB2		20	12	13821777	57485909	IGR: 8Kb before SEL1L2(-)	Intron of NAB2(+):128bp after exon 2		GRCh37	TRANSLOCATION			NAB2-intragenic	PRECISE	3to5	NAB2 (NM_005967) rearrangement: t(12;20)(q13.3;p12.1)(chr12:g.57485909::chr20:g.13821777)			0	0	0	0	62
P-0033072-T01-IM6	SOMATIC	NAB2	SRGAP1	12	12	57487737	64368994	Intron of NAB2(+):356bp after exon 6	Intron of SRGAP1(+):9Kb before exon 2		GRCh37	INVERSION			NAB2-SRGAP1 Fusion	PRECISE	5to5	NAB2 (NM_005967) - SRGAP1 (NM_020762) rearrangement: c.1468+356_c.68-8733:SRGAP1inv			6881257	57252	98765	0	6
P-0057993-T01-IM6	SOMATIC	NAB2	FAM19A2	12	12	57485633	62540420	Exon 2 of NAB2(+)	5-UTR of FAM19A2(-):436Kb before coding start		GRCh37	INVERSION	10	12	Protein Fusion: mid-exon  {FAM19A2:NAB2}	PRECISE	5to5	NAB2 (NM_005967) rearrangement: c.809:NAB2_chr12:g.62540420inv	yes	unknown	5054787	77499	162506	0	12
P-0038472-T01-IM6	SOMATIC	NAB2	DLGAP2	12	8	57487547	1518542	Intron of NAB2(+):166bp after exon 6	Intron of DLGAP2(+):4Kb after exon 3		GRCh37	TRANSLOCATION	0	6	Protein Fusion: out of frame  {NAB2:DLGAP2}	IMPPRECISE	3to5	NAB2 (NM_005967) - DLGAP2 (NM_004745) rearrangement: t(8;12)(p23.3;q13.3)(chr8:g.1518542::chr12:g.57487547)	yes	unknown	0	0	0	0	5
P-0025245-T01-IM6	SOMATIC	NAB2	MTOR	12	1	57491919	11300310	Promoter of NAB2(+):9Kb from tx start	Intron of MTOR(-):49bp after exon 11		GRCh37	TRANSLOCATION	10	15	Transcript Fusion {MTOR:NAB2}	PRECISE	5to5	MTOR (NM_004958)  - STAT6 (NM_003153) rearrangement: t(1;12)(p36.22;q13.3)(chr1:g.11300310::chr12:g.57491919)	yes	unknown	0	0	0	0	16
P-0075212-T01-IM7	SOMATIC	NADK	NADK	16	1	30634076	1686137	IGR: 20Kb before ZNF689(-)	Exon 10 of NADK(-)		GRCh37	TRANSLOCATION	10	63	NADK-intragenic	PRECISE	3to3	NADK (NM_001198994) rearrangement: t(1;16)(p36.33;p11.2)(chr1:g.1686137::chr16:g.30634076)	yes	unknown	0	0	0	0	63
P-0063996-T01-IM7	SOMATIC	NADK		1	1	1686706	37766920	Intron of NADK(-):106bp after exon 9	IGR: 140Kb before MIR4255(+)		GRCh37	INVERSION			NADK-intragenic	PRECISE	5to5	NADK (NM_001198994) rearrangement: c.1123+107:NADK_chr1:g.37766920inv			36080214	619066	527442	0	38
P-0034469-T01-IM6	SOMATIC	NBEAL2	SETD2	3	3	47038707	47165059	Intron of NBEAL2(+):41bp before exon 19	Exon 3 of SETD2(-)		GRCh37	DUPLICATION	10	7	SETD2-NBEAL2 fusion	PRECISE	5to3	NBEAL2 (NM_015175) - SETD2 (NM_014159) rearrangement: c.2650-4:NBEAL2_c.1067:SETD2dup	yes	unknown	126352	44456	76838	0	7
P-0070262-T01-IM7	SOMATIC	NBN	NBN	8	8	90948041	90949222	Intron of NBN(-):201bp before exon 16	Intron of NBN(-):31bp after exon 15		GRCh37	DELETION	0	12	Deletion within intron	IMPPRECISE	3to5	NBN (NM_002485) rearrangement: c.2234+32_c.2235-201del	yes	unknown	1181	258	183	0	19
P-0046999-T01-IM6	SOMATIC	NBN	NBN	8	8	90963385	90965617	Intron of NBN(-):2Kb after exon 11	Exon 11 of NBN(-)		GRCh37	DELETION	10	45	Deletion within transcript : mid-exon	PRECISE	3to5	NBN (NM_002485) rearrangement: c.1700_c.1845+2087del	yes	unknown	2232	467	826	0	45
P-0014583-T01-IM6	SOMATIC	NBN		8	8	90989638	90995176	Intron of NBN(-): 810bp after exon 5	Intron of NBN(-): 93bp before exon 2		GRCh37	DUPLICATION			Duplication of 4 exons: out of frame	PRECISE	5to3	NBN (NM_002485) rearrangement: c.38-93_c.584+810dup			5538	4080	9482	0	12
P-0068097-T01-IM7	SOMATIC	NBN	NBN	8	8	90955565	90970643	Exon 14 of NBN(-)	Intron of NBN(-):309bp after exon 9		GRCh37	DUPLICATION	7	8	Duplication within transcript : mid-exon	PRECISE	5to3	NBN (NM_002485) rearrangement: c.1124+310_c.2100dup	yes	unknown	15078	5958	6156	0	8
P-0004659-T01-IM5	SOMATIC	NBN	NBN	8	8	90959521	90967613	Intron of NBN(-): 531bp after exon 12	Exon 10 of NBN(-)		GRCh37	DUPLICATION	17	9	Duplication within transcript: mid-exon	PRECISE	5to3	NBN (NM_002485) rearrangement: c.1295_c.1914+531dup	yes	unknown	8092	4082	6446	0	9
P-0039690-T01-IM6	SOMATIC	NBN	LINC00534	8	8	90982602	91222720	Exon 7 of NBN(-)	IGR: 11Kb before LINC00534(+)		GRCh37	DUPLICATION	10	15	NBN-intragenic	PRECISE	5to3	NBN (NM_002485) rearrangement: c.886:NBN_chr8:g.91222720dup	yes	unknown	240118	6963	9573	0	15
P-0041523-T01-IM6	SOMATIC	NBN	KCNK9	8	8	90958162	140599814	Intron of NBN(-):205bp after exon 13	IGR: 13Kb before KCNK9(-)		GRCh37	INVERSION	9	18	NBN-intragenic	PRECISE	5to5	NBN (NM_002485) rearrangement: c.2070+206:NBN_chr8:g.140599814inv	yes	unknown	49641652	79640	176747	0	17
P-0073279-T01-IM7	SOMATIC	NBN	NBN	8	8	90811469	90993099	IGR: 41Kb before RIPK2(+)	Exon 4 of NBN(-)		GRCh37	INVERSION	10	90	NBN-intragenic	PRECISE	3to3	NBN (NM_002485) rearrangement: c.343:NBN_chr8:g.90811469inv	yes	unknown	181630	13656	25101	0	90
P-0082319-T01-IM7	SOMATIC	NBN		17	8	76226714	90993695	Promoter of TMEM235(+):676bp from tx start	Exon 3 of NBN(-)		GRCh37	TRANSLOCATION			NBN-intragenic	PRECISE	5to3	NBN (NM_002485) rearrangement: t(8;17)(q21.3;q25.3)(chr8:g.90993695::chr17:g.76226714)			0	0	0	0	7
P-0008908-T01-IM5	SOMATIC	NBN		8	8	90959922	116744050	Intron of NBN(-): 130bp after exon 12	IGR: 63Kb after TRPS1(-)		GRCh37	INVERSION			NBN-intragenic	PRECISE	5to5	NBN (NM_002485) rearrangement: c.1914+130_chr8:g.116744050inv			25784128	23416	29457	0	16
P-0010087-T01-IM5	SOMATIC	NBN		8	8	90990594	96017141	Intron of NBN(-): 43bp before exon 5	IGR: 20Kb before C8orf38(+)		GRCh37	INVERSION			NBN-intragenic	PRECISE	3to3	NBN (NM_002485) rearrangement: chr8;g.96017141_c.481-43:NBNinv			5026547	10338	10778	0	124
P-0011334-T01-IM5	SOMATIC	NBN		8	8	90397655	90947772	IGR: 372Kb before RIPK2(+)	3-UTR of NBN(-): 38bp after coding stop		GRCh37	DELETION			NBN-intragenic	PRECISE	3to5	NBN (NM_002485) Rearrangement: chr8:g.90397655_c.*38			550117	756	552	0	12
P-0012116-T01-IM5	SOMATIC	NBN		8	4	90965856	49069963	Exon 11 of NBN(-)	IGR: 6Kb after CWH43(+)		GRCh37	TRANSLOCATION			NBN-intragenic	IMPRECISE	5to3	NBN (NM_002485) Rearrangement : t(4,8)(p11,q21.3)(chr4:g.131062050::chr8:g.143130066)			0	0	0	0	24
P-0036726-T01-IM6	SOMATIC	NBN		8	8	50486774	90967727	IGR: 336Kb before SNTG1(+)	Exon 10 of NBN(-)		GRCh37	DELETION			NBN-intragenic	PRECISE	3to5	NBN (NM_002485) rearrangement: c.1181:NBN_chr8:g.50486774del			40480953	118721	249153	0	35
P-0053138-T01-IM6	SOMATIC	NBN		8	8	90843195	90947853	IGR: 71Kb before OSGIN2(+)	Intron of NBN(-):13bp before exon 16		GRCh37	DELETION			NBN-intragenic	PRECISE	3to5	NBN (NM_002485) rearrangement: c.2235-13:NBN_chr8:g.90843195del			104658	507	487	0	4
P-0083851-T01-IM7	SOMATIC	NBN		8	8	79178811	90965488	IGR: 250Kb before PKIA(+)	Exon 11 of NBN(-)		GRCh37	INVERSION			NBN-intragenic	PRECISE	5to5	NBN (NM_002485) rearrangement: c.1829:NBN_chr8:g.79178811inv			11786677	25292	85347	0	90
P-0020158-T01-IM6	SOMATIC	NBN	TG	8	8	90990573	134037193	Intron of NBN(-):22bp before exon 5	Intron of TG(+):3Kb after exon 40		GRCh37	INVERSION	10	6	Protein Fusion: out of frame  {TG:NBN}	PRECISE	3to3	TG (NM_003235) - NBN (NM_002485) rearrangement: c.7036+2798:TG_c.481-22:NBNinv	yes	unknown	43046620	72113	86577	0	6
P-0076400-T01-IM7	SOMATIC	NBR1	STAT5A	17	17	40459710	41357753	Exon 16 of STAT5A(+)	Intron of NBR1(+):2Kb after exon 20		GRCh37	DUPLICATION	10	18	Protein Fusion: mid-exon  {NBR1:STAT5A}	PRECISE	5to3	NBR1 (NM_005899) - STAT5A (NM_003152) rearrangement: c.2727+1950:NBR1_c.1875:STAT5Adup	yes	unknown	898043	105478	149516	0	18
P-0006071-T01-IM5	SOMATIC	NCOA3	NCOA3	20	20	46265466	46272155	Exon 12 of NCOA3(+)	Intron of NCOA3(+): 1Kb after exon 17		GRCh37	INVERSION	125	102	Antisense fusion	PRECISE	3to3	NCOA3 (NM_181659) rearrangement : c.2336_3252+1027inv	yes	unknown	6689	15949	25441	0	198
P-0027609-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46267979	46275011	Intron of NCOA3(+):33bp after exon 14	Intron of NCOA3(+):805bp before exon 18		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	NCOA3 (NM_181659) rearrangement: c.2707+33_c.3253-806inv	yes	unknown	7032	4200	9009	0	11
P-0049262-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46281756	46285828	Exon 22 of NCOA3(+)	Promoter of NCOA3(+):155Kb from tx start		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	NCOA3 (NM_181659) rearrangement: c.4203:NCOA3_chr20:g.46285828del	yes	unknown	4072	1587	2051	0	8
P-0019129-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46178247	46256528	5-UTR of NCOA3(+):73Kb before coding start	Intron of NCOA3(+):35bp after exon 7		GRCh37	DUPLICATION	10	33	Duplication within transcript	PRECISE	5to3	NCOA3 (NM_181659) rearrangement: c.-98-33680_c.721+35dup	yes	unknown	78281	8121	19238	0	54
P-0040081-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	41905066	46266705	IGR: 181Kb before SRSF6(+)	Intron of NCOA3(+):178bp after exon 13		GRCh37	INVERSION	10	14	NCOA3-intragenic	PRECISE	3to3	NCOA3 (NM_181659) rearrangement: c.2512+178:NCOA3_chr20:g.41905066inv	yes	unknown	4361639	14240	28923	0	13
P-0046259-T01-IM6	SOMATIC	NCOA3	MAMDC2	20	9	46279928	72660473	Exon 20 of NCOA3(+)	Intron of MAMDC2(+):860bp after exon 2		GRCh37	TRANSLOCATION	10	26	NCOA3-intragenic	PRECISE	5to5	NCOA3 (NM_181659) rearrangement: t(9;20)(q21.12;q13.12)(chr9:g.72660473::chr20:g.46279928)	yes	unknown	0	0	0	0	33
P-0069464-T01-IM7	SOMATIC	NCOA3	NCOA3	20	20	43793379	46271225	IGR: 10Kb before PI3(+)	Intron of NCOA3(+):97bp after exon 17		GRCh37	INVERSION	10	23	NCOA3-intragenic	PRECISE	3to3	NCOA3 (NM_181659) rearrangement: c.3252+97:NCOA3_chr20:g.43793379inv	yes	unknown	2477846	29075	46304	0	23
P-0078154-T01-IM7	SOMATIC	NCOA3	DOK5	20	20	46252656	53201118	Exon 4 of NCOA3(+)	Intron of DOK5(+):4Kb before exon 3		GRCh37	INVERSION	10	12	NCOA3-intragenic	PRECISE	5to5	NCOA3 (NM_181659) rearrangement: c.85:NCOA3_chr20:g.53201118inv	yes	unknown	6948462	43934	81850	0	15
P-0012864-T01-IM5	SOMATIC	NCOA3		Y	20	13833028	46262982	IGR: 685Kb before GYG2P1(-)	Intron of NCOA3(+): 43bp after exon 10		GRCh37	TRANSLOCATION			NCOA3-intragenic	IMPRECISE	5to3	NCOA3 (NM_181659) rearrangement: t(20:Y)(q13.12;q11.21)(chr20:g.46262982::chrY:g.13833028)			0	0	0	0	14
P-0062280-T01-IM7	SOMATIC	NCOA3		20	20	2262648	46252778	IGR: 14Kb before TGM3(+)	Exon 4 of NCOA3(+)		GRCh37	INVERSION			NCOA3-intragenic	PRECISE	3to3	NCOA3 (NM_181659) rearrangement: c.207:NCOA3_chr20:g.2262648inv			43990130	357404	516243	0	21
P-0041479-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	30868436	46268365	5-UTR of KIF3B(+):29Kb before coding start	Exon 15 of NCOA3(+)		GRCh37	DELETION	10	18	Protein Fusion: mid-exon  {KIF3B:NCOA3}	PRECISE	3to5	NCOA3 (NM_181659) rearrangement: c.2752:NCOA3_chr20:g.30868436del	yes	unknown	15399929	170589	319141	0	23
P-0008757-T01-IM5	SOMATIC	NCOA3	BCAS1	20	20	46264260	52673904	Exon 11 of NCOA3(+)	Intron of BCAS1(-): 720bp after exon 3		GRCh37	INVERSION	297	102	Protein fusion: mid-exon (BCAS1-NCOA3)	PRECISE	5to5	BCAS1 (NM_003657) - NCOA3 (NM_181659) rearrangement : c.142+720:BCAS1_c.1307:NCOA3inv	yes	unknown	6409644	72552	331445	0	247
P-0058763-T01-IM7	SOMATIC	NCOA3	CDH22	20	20	44867856	46265624	Intron of CDH22(-):2Kb after exon 3	Intron of NCOA3(+):118bp after exon 12		GRCh37	INVERSION	10	10	Protein Fusion: out of frame  {NCOA3:CDH22}	PRECISE	3to3	NCOA3 (NM_181659) - CDH22 (NM_021248) rearrangement: c.2376+118:NCOA3_c.550+1746:CDH22inv	yes	unknown	1397768	19937	20372	0	10
P-0031621-T01-IM6	SOMATIC	NCOA3	MYCNUT	20	2	46254078	16067094	Intron of NCOA3(+):46bp before exon 5	5-UTR of MYCNUT(+):9Kb before coding start		GRCh37	TRANSLOCATION	0	10	Transcript Fusion {MYCNUT:NCOA3}	IMPPRECISE	5to3	NCOA3 (NM_181659) rearrangement: t(2;20)(p24.3;q13.12)(chr2:g.16067094::chr20:g.46254078)	yes	unknown	0	0	0	0	11
P-0049600-T01-IM6	SOMATIC	NCOA4	RET								GRCh37				NCOA4-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: NCOA4-RET fusion. Note: The rearrangement is an in-frame fusion between genes NCOA4 Exon9 (NM_005437) and RET Exon12 (NM_020975).	yes	unknown					
P-0025531-T01-IM6	SOMATIC	NCOA4	RET								GRCh37				NCOA4-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: NCOA4-RET fusion. Note: The rearrangement is an in-frame fusion between genes NCOA4 Exon7 (NM_001145260) and RET Exon12 (NM_020975).	yes	unknown					
P-0042880-T01-IM6	SOMATIC	NCOA4	RET								GRCh37				NCOA4-RET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NCOA4-RET fusion. Note: The rearrangement is an in-frame fusion between genes NCOA4 Exon10 (NM_001145260) and RET Exon12 (NM_020975).	yes	unknown					
P-0045460-T01-IM6	SOMATIC	NCOA4	RET								GRCh37				NCOA4-RET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NCOA4-RET fusion. Note: The rearrangement is an in-frame fusion between genes NCOA4 Exon10 (NM_001145260) and RET Exon12 (NM_020975).	yes	unknown					
P-0045466-T01-IM6	SOMATIC	NCOA4	RET								GRCh37				NCOA4-RET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NCOA4-RET fusion. Note: The rearrangement is an in-frame fusion between genes NCOA4 Exon9 (NM_001145260) and RET Exon12 (NM_020975).	yes	unknown					
P-0049600-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611613	51586611	Intron of RET(+):418bp before exon 12	Exon 11 of NCOA4(+)		GRCh37	DUPLICATION	10	53	Protein Fusion: mid-exon  {NCOA4:RET}	PRECISE	5to3	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.1889:NCOA4_c.2137-419:RETdup	yes	unknown	7974998	18426	28540	0	60
P-0065826-T01-IM7	SOMATIC	NCOA4	RET	10	10	43610857	51587635	Intron of RET(+):673bp after exon 11	Intron of TIMM23B(+):145Kb before exon 7		GRCh37	DUPLICATION	10	50	Protein Fusion: out of frame  {TIMM23B:RET}	PRECISE	5to3	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.2136+673:RET_c.*23+937NCOA4dup	yes	unknown	7976778	41247	37649	0	50
P-0025531-T01-IM6	SOMATIC	NCOA4		10	10	43611375	51582688	Intron of RET(+):656bp before exon 12	Intron of TIMM23B(+):150Kb before exon 7		GRCh37	DUPLICATION			Protein Fusion: out of frame  {TIMM23B:RET}	PRECISE	5to3	NCOA4 (NM_001145260) RET (NM_020975) fusion: c.619-108NCOA4_c.2137-657RETdup			7971313	14832	30125	0	44
P-0037286-T01-IM6	SOMATIC	NCOR1	ZNF559	19	17	9438166	15989661	Intron of ZNF559(+):3Kb after exon 2	Exon 23 of NCOR1(-)		GRCh37	TRANSLOCATION	10	31	Antisense Fusion	PRECISE	3to5	NCOR1 (NM_006311) - ZNF559 (NM_001202406) rearrangement: t(17;19)(p12;p13.2)(chr17:g.15989661::chr19:g.9438166)	yes	unknown	0	0	0	0	32
P-0050437-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16024449	16027067	Exon 16 of NCOR1(-)	Intron of NCOR1(-):2Kb after exon 15		GRCh37	INVERSION	9	8	Antisense Fusion	PRECISE	5to5	NCOR1 (NM_006311) rearrangement: c.1634+2329_c.1769inv	yes	unknown	2618	1349	1239	0	9
P-0019111-T01-IM6	SOMATIC	NCOR1		17	17	16048312	16049773	Intron of NCOR1(-):1Kb before exon 11	Exon 10 of NCOR1(-)		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	NCOR1 (NM_006311) rearrangement: c.999_c.1083-1302inv			1461	975	1054	0	16
P-0076515-T02-IM7	SOMATIC	NCOR1	NCOR1	17	17	16020071	16021350	Intron of NCOR1(-):1Kb after exon 18	Intron of NCOR1(-):9bp before exon 18		GRCh37	DELETION	5	2	Deletion of 1 exon : out of frame	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.1916-9_c.2055+1131del	yes	unknown	1279	980	1027	0	3
P-0062868-T01-IM7	SOMATIC	NCOR1		17	17	16040947	16042316	Intron of NCOR1(-):221bp before exon 14	Intron of NCOR1(-):5bp after exon 12		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.1352+6_c.1408-221del			1369	1283	811	0	30
P-0017217-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15983506	15985685	Intron of NCOR1(-):128bp before exon 26	Intron of NCOR1(-):2Kb before exon 24		GRCh37	DELETION	10	6	Deletion of 2 exons : out of frame	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.3178-1644_c.3401-128del	yes	unknown	2179	1740	772	0	6
P-0065526-T01-IM7	SOMATIC	NCOR1		17	17	16004990	16058779	Exon 20 of NCOR1(-)	Intron of NCOR1(-):2Kb before exon 7		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.733-2070_c.2264del			53789	13121	16716	0	33
P-0011134-T01-IM5	SOMATIC	NCOR1	NCOR1	17	17	15965123	15967843	Exon 37 of NCOR1(-)	Intron of NCOR1(-): 341bp after exon 34		GRCh37	DELETION	26	33	Deletion within transcript: mid-exon	PRECISE	3to5	NCOR1 (NM_006311) rearrangement : c.5101+341_5473del	yes	unknown	2720	4292	3068	0	27
P-0014583-T01-IM6	SOMATIC	NCOR1		17	17	16040631	16061446	Exon 14 of NCOR1(-)	Intron of NCOR1(-): 628bp after exon 6		GRCh37	DUPLICATION			Duplication within transcript: mid-exon	PRECISE	5to3	NCOR1 (NM_006311) rearrangement: c.732+628_c.1503dup			20815	7896	11721	0	30
P-0016941-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15938318	15949778	Intron of NCOR1(-):60bp before exon 45	Intron of NCOR1(-):486bp after exon 42		GRCh37	INVERSION	8	4	NCOR1-intragenic	PRECISE	3to3	NCOR1 (NM_006311) rearrangement: c.6956-60_c.6679+487inv	yes	unknown	11460	3162	5087	0	4
P-0046624-T01-IM6	SOMATIC	NCOR1	LRRC75A-AS1	17	17	16022833	16345142	Intron of NCOR1(-):34bp before exon 17	5-UTR of LRRC75A-AS1(+):29Kb before coding start		GRCh37	DELETION	10	13	NCOR1-intragenic	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.1853-34:NCOR1_chr17:g.16345142del	yes	unknown	322309	21415	38475	0	13
P-0036748-T02-IM6	SOMATIC	NCOR1	NCOR1	20	17	2327385	15983421	IGR: 34Kb before TGM6(+)	Intron of NCOR1(-):43bp before exon 26		GRCh37	TRANSLOCATION	10	22	NCOR1-intragenic	PRECISE	5to3	NCOR1 (NM_006311) rearrangement: t(17;20)(p12;p13)(chr17:g.15983421::chr20:g.2327385)	yes	unknown	0	0	0	0	22
P-0050528-T01-IM6	SOMATIC	NCOR1	PLXDC1	17	17	15976835	37269714	Exon 28 of NCOR1(-)	Intron of PLXDC1(-):4Kb before exon 3		GRCh37	INVERSION	10	50	NCOR1-intragenic	PRECISE	3to3	NCOR1 (NM_006311) rearrangement: c.3719:NCOR1_chr17:g.37269714inv	yes	unknown	21292879	189649	269157	0	49
P-0052272-T01-IM6	SOMATIC	NCOR1	OGDH	17	7	15989799	44731822	Intron of NCOR1(-):43bp before exon 23	Intron of OGDH(+):2Kb before exon 11		GRCh37	TRANSLOCATION	0	7	NCOR1-intragenic	IMPPRECISE	3to5	NCOR1 (NM_006311) rearrangement: t(7;17)(p13;p12)(chr7:g.44731822::chr17:g.15989799)	yes	unknown	0	0	0	0	6
P-0064394-T01-IM7	SOMATIC	NCOR1	NCOR1	18	17	63844489	15952207	IGR: 324Kb before CDH19(-)	Exon 41 of NCOR1(-)		GRCh37	TRANSLOCATION	10	29	NCOR1-intragenic	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: t(17;18)(p12;q22.1)(chr17:g.15952207::chr18:g.63844489)	yes	unknown	0	0	0	0	29
P-0064899-T01-IM7	SOMATIC	NCOR1	SEMA6D	17	15	15964824	46987627	Exon 37 of NCOR1(-)	IGR: 489Kb before SEMA6D(+)		GRCh37	TRANSLOCATION	10	30	NCOR1-intragenic	PRECISE	5to5	NCOR1 (NM_006311) rearrangement: t(15;17)(q21.1;p12)(chr15:g.46987627::chr17:g.15964824)	yes	unknown	0	0	0	0	30
P-0079354-T02-IM7	SOMATIC	NCOR1	FDX1	17	11	16056742	110371762	Intron of NCOR1(-):33bp before exon 7	IGR: 71Kb before FDX1(+)		GRCh37	TRANSLOCATION	10	39	NCOR1-intragenic	PRECISE	3to3	NCOR1 (NM_006311) rearrangement: t(11;17)(q22.3;p11.2)(chr11:g.110371762::chr17:g.16056742)	yes	unknown	0	0	0	0	39
P-0015059-T01-IM6	SOMATIC	NCOR1		17	14	15976930	21071817	Intron of NCOR1(-): 47bp before exon 28	IGR: 14Kb before RNASE12(-)		GRCh37	TRANSLOCATION			NCOR1-intragenic	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: t(14;17)(q11.2;p12)(chr14:g.21071817::chr17:g.15976930)			0	0	0	0	14
P-0037044-T01-IM6	SOMATIC	NCOR1		17	17	15978905	26701849	Exon 27 of NCOR1(-)	Intron of SARM1(+):2Kb after exon 2		GRCh37	DELETION			NCOR1-intragenic	PRECISE	3to5	NCOR1 (NM_006311) rearrangement: c.3613:NCOR1_chr17:g.26701849del			10722944	73516	93392	0	51
P-0038498-T01-IM6	SOMATIC	NCOR1	CENPV	17	17	16029496	16250586	Exon 15 of NCOR1(-)	Intron of CENPV(-):1Kb after exon 3		GRCh37	DUPLICATION	9	8	Protein Fusion: mid-exon  {NCOR1:CENPV}	PRECISE	5to3	NCOR1 (NM_006311) - CENPV (NM_181716) rearrangement: c.1534:NCOR1_c.579+1344:CENPVdup	yes	unknown	221090	18514	19687	0	8
P-0030382-T01-IM6	SOMATIC	NCOR1	PIGL	17	17	16022786	16151101	Exon 17 of NCOR1(-)	Intron of PIGL(+):14Kb after exon 2		GRCh37	INVERSION	0	6	Protein Fusion: mid-exon  {NCOR1:PIGL}	IMPPRECISE	5to5	NCOR1 (NM_006311) - PIGL (NM_004278) Rearrangement : c.1866:NCOR1_c.335+13717:PIGLinv	yes	unknown	128315	17848	24323	0	7
P-0055752-T01-IM6	SOMATIC	NCOR1	RSPRY1	17	16	15942849	57269014	Exon 44 of NCOR1(-)	Intron of RSPRY1(+):21bp before exon 14		GRCh37	TRANSLOCATION	10	11	Protein Fusion: mid-exon  {NCOR1:RSPRY1}	PRECISE	5to5	NCOR1 (NM_006311) - RSPRY1 (NM_133368) rearrangement: t(16;17)(q13;p12)(chr16:g.57269014::chr17:g.15942849)	yes	unknown	0	0	0	0	12
P-0040413-T01-IM6	SOMATIC	NCOR1	STX8	17	17	9478717	16068425	Intron of STX8(-):391bp after exon 1	Exon 5 of NCOR1(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {NCOR1:STX8}	PRECISE	3to5	NCOR1 (NM_006311) - STX8 (NM_004853) rearrangement: c.486:NCOR1_c.17+392:STX8del			6589708	74867	62916	0	19
P-0013105-T01-IM5	SOMATIC	NCOR1	USP28	17	11	15968849	113706887	Exon 33 of NCOR1(-)	Intron of USP28(-): 2Kb before exon 6		GRCh37	TRANSLOCATION	0	102	Protein fusion: mid-exon (NCOR1-USP28)	IMPRECISE	5to3	NCOR1 (NM_006311) - USP8 (NM_020886) rearrangement: t(11;17)(q23.2;p12)(chr11:g.113706887::chr17:g.15968849)	yes	unknown	0	0	0	0	98
P-0072383-T01-IM7	SOMATIC	NCOR1	NUP88	17	17	5319515	16022605	Intron of NUP88(-):317bp after exon 2	Intron of NCOR1(-):131bp after exon 17		GRCh37	DELETION	10	26	Protein Fusion: out of frame  {NCOR1:NUP88}	PRECISE	3to5	NCOR1 (NM_006311) - NUP88 (NM_002532) rearrangement: c.1915+132:NCOR1_c.467+318:NUP88del	yes	unknown	10703090	150954	172780	0	34
P-0051003-T01-IM6	SOMATIC	NEFH	EWSR1	22	22	29692037	29881674	Intron of EWSR1(+):191bp before exon 13	Intron of NEFH(+):37bp before exon 3		GRCh37	DUPLICATION	6	6	Protein Fusion: in frame  {NEFH:EWSR1}	PRECISE	5to3	NEFH (NM_021076) - EWSR1 (NM_013986) rearrangement: c.1084-38:NEFH_c.1180-192:EWSR1dup	yes	unknown	189637	11654	15757	0	6
P-0030472-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	72047255	72058539	Intron of NEGR1(-):11Kb after exon 6	Exon 6 of NEGR1(-)		GRCh37	DELETION	10	14	Deletion within transcript : mid-exon	PRECISE	3to5	NEGR1 (NM_173808) rearrangement: c.901_c.940+11245del	yes	unknown	11284	511	340	0	14
P-0012084-T01-IM5	SOMATIC	NEGR1	NEGR1	1	1	72651476	72748039	Intron of NEGR1(-): 97Kb after exon 1	Exon 1 of NEGR1(-)		GRCh37	DUPLICATION	20	8	Duplication within transcript: mid-exon	PRECISE	5to3	NEGR1 (NM_173808) rearrangement: c.139_c.176+96526dup	yes	unknown	96563	1562	978	0	7
P-0045617-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	63091106	72163954	Intron of DOCK7(-):34bp before exon 12	Intron of NEGR1(-):132bp before exon 4		GRCh37	INVERSION	10	54	NEGR1-intragenic	PRECISE	3to3	NEGR1 (NM_173808) rearrangement: c.536-132:NEGR1_chr1:g.63091106inv	yes	unknown	9072848	33614	41732	0	54
P-0063798-T01-IM7	SOMATIC	NEGR1	LPHN2	1	1	72077123	82125137	Intron of NEGR1(-):294bp before exon 5	IGR: 40Kb before LPHN2(+)		GRCh37	INVERSION	10	22	NEGR1-intragenic	PRECISE	3to3	NEGR1 (NM_173808) rearrangement: c.668-294:NEGR1_chr1:g.82125137inv	yes	unknown	10048014	51392	88407	0	21
P-0045180-T01-IM6	SOMATIC	NEGR1	MAN1A2	1	1	72748116	117986438	Exon 1 of NEGR1(-)	Intron of MAN1A2(+):1Kb after exon 6		GRCh37	INVERSION	10	10	Protein Fusion: mid-exon  {NEGR1:MAN1A2}	PRECISE	5to5	NEGR1 (NM_173808) - MAN1A2 (NM_006699) rearrangement: c.62:NEGR1_c.950+1491:MAN1A2inv	yes	unknown	45238322	89254	46278	0	12
P-0034352-T01-IM6	SOMATIC	NEGR1	NBPF20	1	1	72058605	145082046	Exon 6 of NEGR1(-)	Intron of NBPF20(+):231Kb before exon 54		GRCh37	INVERSION	10	48	Protein Fusion: mid-exon  {NEGR1:NBPF20}	PRECISE	5to5	NEGR1 (NM_173808) rearrangement: c.835:NEGR1_chr1:g.145082046inv	yes	unknown	73023441	193398	247891	0	56
P-0023668-T01-IM6	SOMATIC	NEK8	KMT2D	17	12	27056368	49415892	Intron of NEK8(+):490bp after exon 1	Exon 53 of KMT2D(-)		GRCh37	TRANSLOCATION	10	20	Antisense Fusion	PRECISE	3to5	KMT2D (NM_003482) - NEK8 (NM_178170) rearrangement: t(12;17)(q13.12;q11.2)(chr12:g.49415892::chr17:g.27056368)	yes	unknown	0	0	0	0	20
P-0055799-T03-IM7	SOMATIC	NETO1	ERG	21	18	39775482	70470364	Exon 4 of ERG(-)	Intron of NETO1(-):9Kb before exon 5		GRCh37	TRANSLOCATION	10	48	Protein Fusion: mid-exon  {NETO1:ERG}	PRECISE	3to5	NETO1 (NM_001201465) - ERG (NM_182918) rearrangement: t(18;21)(q22.3;q22.2)(chr18:g.70470364::chr21:g.39775482)	yes	unknown	0	0	0	0	48
P-0060860-T01-IM7	SOMATIC	NF1	ZNHIT3	17	17	29487656	34850557	Intron of NF1(+):2Kb after exon 3	Intron of ZNHIT3(+):707bp after exon 4		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.288+1545:NF1_chr17:g.34850557inv	yes	unknown	5362901	140110	162156	0	11
P-0066779-T01-IM7	SOMATIC	NF1	SLC39A11	17	17	29557311	70845849	Exon 23 of NF1(+)	Exon 6 of SLC39A11(-)		GRCh37	DELETION	10	40	Antisense Fusion	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.3024:NF1_chr17:g.70845849del	yes	unknown	41288538	809210	633072	0	41
P-0073226-T01-IM7	SOMATIC	NF1	ACACA	17	17	29559922	35478949	Intron of NF1(+):23bp after exon 26	Intron of ACACA(-):503bp after exon 49		GRCh37	DELETION	10	22	Antisense Fusion	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.3496+23:NF1_chr17:g.35478949del	yes	unknown	5919027	96466	232806	0	24
P-0080987-T01-IM7	SOMATIC	NF1		20	17	2284284	29588841	Intron of TGM3(+):6Kb before exon 2	Exon 34 of NF1(+)		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to3	NF1 (NM_001042492) rearrangement: t(17;20)(q11.2;p13)(chr17:g.29588841::chr20:g.2284284)			0	0	0	0	109
P-0081572-T01-IM7	SOMATIC	NF1		17	15	29685704	74287776	Intron of NF1(+):64bp after exon 54	Intron of PML(+):494bp after exon 1		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to3	NF1 (NM_001042492) rearrangement: t(15;17)(q24.1;q11.2)(chr15:g.74287776::chr17:g.29685704)			0	0	0	0	68
P-0087777-T01-IM7	SOMATIC	NF1		17	17	29553412	33915391	Intron of NF1(+):40bp before exon 18	5-UTR of AP2B1(+):6Kb before coding start		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.2002-41:NF1_chr17:g.33915391inv			4361979	211283	175261	0	4
P-0038166-T01-IM6	SOMATIC	NF1	NF1	17	17	29677395	29681199	Intron of NF1(+):59bp after exon 50	Intron of NF1(+):2Kb after exon 51		GRCh37	DELETION	4	4	Deletion of 1 exon : out of frame	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.7457+59_c.7615+1767del	yes	unknown	3804	1450	1510	0	4
P-0073056-T01-IM7	SOMATIC	NF1	NF1	17	17	29490195	29544650	Intron of NF1(+):8bp before exon 4	Intron of NF1(+):1Kb before exon 14		GRCh37	DELETION	10	14	Deletion of 10 exons : in frame	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.289-9_c.1528-1373del	yes	unknown	54455	9429	8279	0	14
P-0030660-T01-IM6	SOMATIC	NF1	NF1	17	17	29607457	29657244	Intron of NF1(+):15Kb after exon 36	Intron of NF1(+):69bp before exon 39		GRCh37	DELETION	0	5	Deletion of 2 exons : in frame	IMPPRECISE	3to5	NF1 (NM_001042492) Rearrangement: c.4835+15100_c.5610-70del	yes	unknown	49787	4419	3292	0	5
P-0068981-T01-IM7	SOMATIC	NF1	NF1	17	17	29469959	29487414	Intron of NF1(+):13Kb before exon 2	Intron of NF1(+):1Kb after exon 3		GRCh37	DELETION	10	63	Deletion of 2 exons : in frame	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.61-13042_c.288+1303del	yes	unknown	17455	6501	3724	0	71
P-0021421-T01-IM6	SOMATIC	NF1		17	17	29557013	29559089	Intron of NF1(+):21bp after exon 22	Intron of NF1(+):1bp before exon 25		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.2990+21_c.3198-2del			2076	2233	636	0	63
P-0066821-T02-IM7	SOMATIC	NF1	NF1	17	17	29487021	29512247	Intron of NF1(+):910bp after exon 3	Intron of NF1(+):3Kb after exon 8		GRCh37	DELETION	10	6	Deletion of 5 exons : in frame	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.288+910_c.888+2564del	yes	unknown	25226	13061	12294	0	6
P-0020868-T01-IM6	SOMATIC	NF1	NF1	17	17	29557177	29559733	Intron of NF1(+):100bp before exon 23	Exon 26 of NF1(+)		GRCh37	DELETION	10	24	Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.2991-101_c.3330del	yes	unknown	2556	3718	5608	0	24
P-0038860-T01-IM6	SOMATIC	NF1	NF1	17	17	29482140	29483123	Intron of NF1(+):860bp before exon 2	Exon 2 of NF1(+)		GRCh37	DELETION	0	18	Deletion within transcript : mid-exon	IMPPRECISE	3to5	NF1 (NM_001042492) Rearrangement : c.61-861_c.183del	yes	unknown	983	731	317	0	18
P-0050664-T01-IM6	SOMATIC	NF1	NF1	17	17	29652993	29655549	Exon 37 of NF1(+)	Intron of NF1(+):692bp after exon 38		GRCh37	DELETION	10	28	Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.4991_c.5609+692del	yes	unknown	2556	2340	1974	0	29
P-0050471-T01-IM6	SOMATIC	NF1	NF1	17	17	29556938	29558612	Exon 22 of NF1(+)	Intron of NF1(+):478bp before exon 25		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.2936_c.3198-479del	yes	unknown	1674	1664	1948		
P-0062019-T01-IM7	SOMATIC	NF1	NF1	17	17	29483297	29490244	Intron of NF1(+):153bp after exon 2	Exon 4 of NF1(+)		GRCh37	DELETION	10	45	Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.204+153_c.329del	yes	unknown	6947	5185	5191	0	45
P-0075326-T01-IM7	SOMATIC	NF1	NF1	17	17	29676161	29696461	Exon 48 of NF1(+)	Intron of NF1(+):5Kb before exon 57		GRCh37	DELETION	10	49	Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.7213_c.8378-4570del	yes	unknown	20300	11516	10352	0	53
P-0078802-T01-IM7	SOMATIC	NF1	NF1	17	17	29664400	29692967	Exon 42 of NF1(+)	Intron of NF1(+):5Kb after exon 56		GRCh37	DELETION	10	12	Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.6442_c.8377+5246del	yes	unknown	28567	13669	12555	0	18
P-0036332-T01-IM6	SOMATIC	NF1		17	17	29434548	29496970	Intron of NF1(+):12Kb after exon 1	Exon 5 of NF1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) Rearrangement : c.60+12161_c.541			62422	4154	5807	0	6
P-0042402-T01-IM6	SOMATIC	NF1		17	17	29634122	29653023	Intron of NF1(+):19Kb before exon 37	Exon 37 of NF1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.4836-18716_c.5021del			18901	853	724	0	29
P-0014464-T01-IM6	SOMATIC	NF1	NF1	17	17	29670144	29672194	Exon 47 of NF1(+)	Intron of NF1(+): 2Kb after exon 47		GRCh37	DELETION	39	31	Deletion within transcript: mid-exon	PRECISE	3to5	NF1 (NM_001042492) Rearrangement : c.7180_c.7189+2041del	yes	unknown	2050	102	75	0	31
P-0004938-T01-IM5	SOMATIC	NF1	NF1	17	17	29449167	29483104	Intron of NF1(+): 27Kb after exon 1	Exon 2 of NF1(+)		GRCh37	DELETION	18	8	Deletion within transcript: mid-exon	PRECISE	3to5	NF1 (NM_001042492) rearrangement : c.60+26780_164del	yes	unknown	33937	1024	940	0	8
P-0066911-T01-IM7	SOMATIC	NF1		17	17	29539317	29542867	Intron of NF1(+):2Kb before exon 13	Intron of NF1(+):1Kb after exon 13		GRCh37	DUPLICATION			Duplication of 1 exon : in frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.1393-2152_c.1527+1264dup			3550	2292	1473	0	10
P-0083884-T02-IM7	SOMATIC	NF1		17	17	29575116	29576161	Intron of NF1(+):885bp before exon 30	Intron of NF1(+):24bp after exon 30		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.3975-886_c.4110+24dup			1045	912	908	0	14
P-0055657-T01-IM6	SOMATIC	NF1	NF1	17	17	29665005	29697535	Intron of NF1(+):37bp before exon 45	Intron of NF1(+):3Kb before exon 58		GRCh37	DUPLICATION	10	43	Duplication of 13 exons : out of frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.6705-38_c.8378-3496dup	yes	unknown	32530	13750	14819	0	44
P-0008161-T01-IM5	SOMATIC	NF1	NF1	17	17	29508637	29518813	Intron of NF1(+): 91bp before exon 7	Intron of NF1(+): 9Kb before exon 9		GRCh37	DUPLICATION	43	56	Duplication of 2 exons: in frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.655-91_c.889-8627dup	yes	unknown	10176	4932	4628	0	50
P-0006916-T01-IM5	SOMATIC	NF1	NF1	17	17	29515887	29528519	Intron of NF1(+): 6Kb after exon 8	Intron of NF1(+): 16bp after exon 11		GRCh37	DUPLICATION	14	17	Duplication of 3 exons: in frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement : c.888+6204_c.1260+16NF1dup	yes	unknown	12632	5019	5103	0	16
P-0064741-T01-IM7	SOMATIC	NF1	NF1	17	17	29551376	29557130	Intron of NF1(+):736bp before exon 17	Intron of NF1(+):138bp after exon 22		GRCh37	DUPLICATION	10	13	Duplication of 6 exons : out of frame	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.1846-737_c.2990+138dup	yes	unknown	5754	10215	13593	0	19
P-0002915-T01-IM3	SOMATIC	NF1	NF1	17	17	29574493	29592397	Intron of NF1(+): 2Kb before exon 30	Intron of NF1(+): 40bp after exon 35		GRCh37	DUPLICATION	34	21	Duplication of 6 exons: in frame	PRECISE	5to3		yes	unknown	17904	10798	13219	0	29
P-0024215-T01-IM6	SOMATIC	NF1	NF1	17	17	29664517	29673874	Exon 43 of NF1(+)	Intron of NF1(+):2Kb before exon 49		GRCh37	DUPLICATION	10	2	Duplication within transcript : mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.6559_c.7190-2264dup	yes	unknown	9357	6594	14733	0	17
P-0053172-T01-IM6	SOMATIC	NF1	NF1	17	17	29552243	29559306	Exon 17 of NF1(+)	Intron of NF1(+):99bp after exon 25		GRCh37	DUPLICATION	10	26	Duplication within transcript : mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.1976_c.3314+99dup	yes	unknown	7063	9091	8809	0	32
P-0039290-T01-IM6	SOMATIC	NF1	NF1	17	17	29676181	29688320	Exon 49 of NF1(+)	Intron of NF1(+):599bp after exon 57		GRCh37	DUPLICATION	10	16	Duplication within transcript : mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.7233_c.8377+599dup	yes	unknown	12139	9282	11520	0	17
P-0079299-T01-IM7	SOMATIC	NF1	NF1	17	17	29527516	29609114	Exon 9 of NF1(+)	Intron of NF1(+):17Kb after exon 35		GRCh37	DUPLICATION	10	24	Duplication within transcript : mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.965_c.4835+16757dup	yes	unknown	81598	37647	59422	0	39
P-0036726-T01-IM6	SOMATIC	NF1		17	17	29556869	29611863	Exon 22 of NF1(+)	Intron of NF1(+):20Kb after exon 36		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.2867_c.4835+19506dup			54994	14826	19859	0	40
P-0005353-T01-IM5	SOMATIC	NF1	NF1	17	17	29665263	29683572	Intron of NF1(+): 106bp after exon 44	Exon 51 of NF1(+)		GRCh37	DUPLICATION	34	15	Duplication within transcript: mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.6819+106_c.7710del	yes	unknown	18309	11076	12298	0	15
P-0015283-T01-IM6	SOMATIC	NF1	NF1	17	17	29521900	29587438	Intron of NF1(+): 6Kb before exon 9	Exon 33 of NF1(+)		GRCh37	DUPLICATION	26	14	Duplication within transcript: mid-exon	PRECISE	5to3	NF1 (NM_001042492) Rearrangement : c.889-5540_c.4482dup	yes	unknown	65538	50387	54804	0	14
P-0015572-T01-IM6	SOMATIC	NF1	NF1	17	17	29541475	29665852	Exon 13 of NF1(+)	Intron of NF1(+): 29bp after exon 45		GRCh37	DUPLICATION	47	25	Duplication within transcript: mid-exon	PRECISE	5to3	NF1 (NM_001042492) rearrangement: c.1399_c.6921+29dup	yes	unknown	124377	40932	45914	0	14
P-0039238-T01-IM6	SOMATIC	NF1	DHRS11	17	17	29585386	34951290	Exon 32 of NF1(+)	Intron of DHRS11(+):110bp before exon 2		GRCh37	INVERSION	10	23	NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.4198:NF1_chr17:g.34951290inv	yes	unknown	5365904	69570	100854	0	30
P-0039980-T01-IM6	SOMATIC	NF1	C8or	17	8	29528649	50391945	Intron of NF1(+):146bp after exon 11	IGR: 407Kb before C8orf22(+)		GRCh37	TRANSLOCATION	6	7	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: t(8;17)(q11.21;q11.2)(chr8:g.50391945::chr17:g.29528649)	yes	unknown	0	0	0	0	6
P-0050758-T01-IM6	SOMATIC	NF1	LINC00469	17	17	29686171	71803627	Intron of NF1(+):138bp after exon 56	3-UTR of LINC00469(-):21Kb after coding stop		GRCh37	INVERSION	7	5	NF1-intragenic	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.8160+138:NF1_chr17:g.71803627inv	yes	unknown	42117456	425708	571919	0	6
P-0054834-T01-IM6	SOMATIC	NF1	NF1	17	17	27681932	29685615	IGR: 36Kb before MIR4523(+)	Exon 55 of NF1(+)		GRCh37	DELETION	10	3	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.8088:NF1_chr17:g.27681932del	yes	unknown	2003683	72740	130769	0	4
P-0056425-T01-IM6	SOMATIC	NF1	CASC17	17	17	29657472	68914013	Exon 39 of NF1(+)	IGR: 180Kb before CASC17(-)		GRCh37	INVERSION	10	17	NF1-intragenic	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.5768:NF1_chr17:g.68914013inv	yes	unknown	39256541	799203	882525	0	17
P-0058265-T01-IM6	SOMATIC	NF1	MTRNR2L9	17	6	29663815	62017257	Exon 42 of NF1(+)	IGR: 267Kb before MTRNR2L9(+)		GRCh37	TRANSLOCATION	10	14	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: t(6;17)(q11.1;q11.2)(chr6:g.62017257::chr17:g.29663815)	yes	unknown	0	0	0	0	14
P-0061507-T01-IM7	SOMATIC	NF1	CCT6B	17	17	29663394	33151892	Exon 40 of NF1(+)	IGR: 103Kb before CCT6B(-)		GRCh37	DELETION	10	12	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.6050:NF1_chr17:g.33151892del	yes	unknown	3488498	49885	33825	0	13
P-0044969-T01-IM6	SOMATIC	NF1	LOC102723427	17	7	29528219	68108423	Intron of NF1(+):42bp after exon 10	IGR: 623Kb before LOC102723427(+)		GRCh37	TRANSLOCATION	8	6	NF1-intragenic	PRECISE	3to3	NF1 (NM_001042492) rearrangement: t(7;17)(q11.22;q11.2)(chr7:g.68108423::chr17:g.29528219)	yes	unknown	0	0	0	0	7
P-0065242-T01-IM7	SOMATIC	NF1	LINC01476	17	17	29661721	57541520	Intron of NF1(+):134bp before exon 39	3-UTR of LINC01476(-):63Kb after coding stop		GRCh37	DELETION	10	11	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.5813-135:NF1_chr17:g.57541520del	yes	unknown	27879799	571117	1120413	0	11
P-0068171-T01-IM7	SOMATIC	NF1	NF1	17	17	27964804	29685494	Intron of SSH2(-):984bp before exon 14	Intron of NF1(+):3bp before exon 54		GRCh37	DELETION	6	4	NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.7971-4:NF1_chr17:g.27964804del	yes	unknown	1720690	125929	97051	0	4
P-0075137-T01-IM7	SOMATIC	NF1	NF1	17	17	27057062	29683507	Intron of NEK8(+):1Kb after exon 1	Exon 51 of NF1(+)		GRCh37	INVERSION	10	119	NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.7645:NF1_chr17:g.27057062inv	yes	unknown	2626445	83234	158537	0	151
P-0076904-T01-IM7	SOMATIC	NF1	ANKFN1	17	17	29694216	54048546	Intron of NF1(+):6Kb after exon 56	IGR: 182Kb before ANKFN1(+)		GRCh37	INVERSION	10	8	NF1-intragenic	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.8377+6495:NF1_chr17:g.54048546inv	yes	unknown	24354330	414345	879066	0	8
P-0001226-T01-IM3	SOMATIC	NF1		17	17	29586265	58638802	Intron of NF1(+): 118bp after exon 32	IGR: 39Kb before PPM1D(+)		GRCh37	DELETION			NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) Deletion (29052537bp): c.4430+118_g.17:58638802del			29052537	475554	655641	0	9
P-0005034-T01-IM5	SOMATIC	NF1		17	17	29676226	45958328	Exon 48 of NF1(+)	IGR: 15Kb before SP2(+)		GRCh37	DELETION			NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.7278:NF1_chr17:g.45958328del			16282102	606004	692869	0	46
P-0019412-T01-IM6	SOMATIC	NF1		17	17	29664214	53698288	Intron of NF1(+):171bp before exon 43	IGR: 99Kb before TMEM100(-)		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.6428-172:NF2_chr17:g.53698288inv			24034074	595405	311725	0	4
P-0019460-T01-IM6	SOMATIC	NF1		19	17	9293069	29646941	IGR: 3Kb before OR7D2(+)	Intron of NF1(+):6Kb before exon 37		GRCh37	TRANSLOCATION			NF1-intragenic	PRECISE	5to3	NF1 (NM_001042492) rearrangement: t(17;19)(q11.2;p13.2)(chr17:g.29646941::chr19:g.9293069)			0	0	0	0	5
P-0023314-T01-IM6	SOMATIC	NF1		17	17	27837607	29657191	Intron of TAOK1(+):274bp before exon 15	Intron of NF1(+):122bp before exon 39		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: chr17:g.27837607_c.5610-123:NF1del			1819584	47537	53469	0	17
P-0024518-T01-IM6	SOMATIC	NF1		17	5	29665106	46356017	Exon 45 of NF1(+)	IGR: 1Mb before HCN1(-)		GRCh37	TRANSLOCATION			NF1-intragenic	PRECISE	5to3	NF1 (NM_001042492) rearrangement: t(5;17)(p11;q11.2)(chr5:g.46356017::chr17:g.29665106)			0	0	0	0	6
P-0025024-T01-IM6	SOMATIC	NF1		17	17	29523609	29527520	Intron of NF1(+):4Kb before exon 9	Exon 9 of NF1(+)		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.889-3831_c.969inv			3911	488	1037	0	13
P-0029291-T01-IM6	SOMATIC	NF1		17	17	29662343	29701234	Intron of NF1(+):294bp after exon 40	3-UTR of NF1(+):279Kb after coding stop		GRCh37	DUPLICATION			NF1-intragenic	PRECISE	5to3	NF1 (NM_001042492) Rearrangement: c.6006+294_c.*61dup			38891	20207	22287	0	18
P-0029814-T01-IM6	SOMATIC	NF1		17	8	29588872	36189531	Exon 35 of NF1(+)	IGR: 452Kb before KCNU1(+)		GRCh37	TRANSLOCATION			NF1-intragenic	PRECISE	3to5	NF1 (NM_001042492) rearrangement: t(8;17)(p12;q11.2)(chr8:g.36189531::chr17:g.29588872)			0	0	0	0	11
P-0032702-T01-IM6	SOMATIC	NF1		17	17	28678685	29552280	IGR: 27Kb before CPD(+)	Intron of NF1(+):12bp after exon 17		GRCh37	INVERSION			NF1-intragenic	PRECISE	3to3	NF1 (NM_001042492) rearrangement: c.2001+12:NF1_chr17:g.28678685inv			873595	24360	29264	0	12
P-0048996-T01-IM6	SOMATIC	NF1		17	17	29555259	29556297	Intron of NF1(+):635bp after exon 20	Exon 21 of NF1(+)		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.2409+635_c.2664inv			1038	1096	587	0	2
P-0065997-T01-IM7	SOMATIC	NF1		17	17	29668579	32642262	Intron of NF1(+):916bp after exon 46	IGR: 4Kb before CCL8(+)		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.7062+916:NF1_chr17:g.32642262inv			2973683	40009	34390	0	6
P-0086104-T01-IM7	SOMATIC	NF1		17	17	29679354	38444371	Exon 50 of NF1(+)	5-UTR of CDC6(+):1Kb before coding start		GRCh37	INVERSION			NF1-intragenic	PRECISE	5to5	NF1 (NM_001042492) rearrangement: c.7537:NF1_chr17:g.38444371inv			8765017	177651	347210	0	4
P-0029936-T01-IM6	SOMATIC	NF1	ACSF2	17	17	29557280	48543946	Exon 23 of NF1(+)	Intron of ACSF2(+):2Kb after exon 11		GRCh37	DUPLICATION	5	9	Protein Fusion: mid-exon  {ACSF2:NF1}	PRECISE	5to3	ACSF2 (NM_025149) - NF1 (NM_001042492) rearrangement: c.1215+229:ACSF2_c.2993:NF1dup	yes	unknown	18986666	410128	609561	0	9
P-0025396-T02-IM6	SOMATIC	NF1	FRMD4B	17	3	29559104	69238320	Exon 25 of NF1(+)	Intron of FRMD4B(-):726bp after exon 18		GRCh37	TRANSLOCATION	10	18	Protein Fusion: mid-exon  {FRMD4B:NF1}	PRECISE	5to5	NF1 (NM_001042492) rearrangement: t(3;17)(p14.1;q11.2)(chr3:g.69238320::chr17:g.29559104)	yes	unknown	0	0	0	0	37
P-0035445-T01-IM6	SOMATIC	NF1	DGKH	17	13	29548947	42642733	Exon 15 of NF1(+)	Intron of DGKH(+):20Kb after exon 2		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {NF1:DGKH}	PRECISE	3to5	NF1 (NM_001042492) - DGKH (NM_178009) rearrangement: t(13;17)(q14.11;q11.2)(chr13:g.42642733::chr17:g.29548947)	yes	unknown	0	0	0	0	7
P-0009759-T01-IM5	SOMATIC	NF1	SHISA9	17	16	29550486	13117863	Exon 16 of NF1(+)	Intron of SHISA9(+): 107Kb after exon 2		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (NF1-SHISA9)	PRECISE	3to5	NF1 (NM_001042492) - SHISA9 (NM_001145204) rearrangement: t(16;17)(p13.12;q11.2)(chr16:g.13117863::chr17:g.29550486 )			0	0	0	0	14
P-0020223-T01-IM6	SOMATIC	NF1	BCAS3	17	17	29556578	59403901	Intron of NF1(+):95bp after exon 21	Intron of BCAS3(+):42Kb before exon 24		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {NF1:BCAS3}	PRECISE	3to5	NF1 (NM_001042492) - BCAS3 (NM_001099432) rearrangement: c.2850+95:NF1_c.2471-41787:BCAS3del	yes	unknown	29847323	650291	789631	0	17
P-0073373-T01-IM7	SOMATIC	NF1	CGRRF1	17	14	29661595	54979728	Intron of NF1(+):260bp before exon 39	Intron of CGRRF1(+):3Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {NF1:CGRRF1}	PRECISE	3to5	NF1 (NM_001042492) - CGRRF1 (NM_006568) rearrangement: t(14;17)(q22.2;q11.2)(chr14:g.54979728::chr17:g.29661595)			0	0	0	0	39
P-0083593-T01-IM7	SOMATIC	NF1	ZSWIM5	17	1	29549657	45506736	Intron of NF1(+):710bp after exon 15	Intron of ZSWIM5(-):526bp before exon 7		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {NF1:ZSWIM5}	IMPPRECISE	3to3	NF1 (NM_001042492) - ZSWIM5 (NM_020883) rearrangement: t(1;17)(p34.1;q11.2)(chr1:g.45506736::chr17:g.29549657)			0	0	0	0	9
P-0016912-T01-IM6	SOMATIC	NF1	LLGL1	17	17	18127933	29653348	Promoter of LLGL1(+):1Kb from tx start	Intron of NF1(+):78bp after exon 37		GRCh37	DUPLICATION			Transcript Fusion {NF1:LLGL1}	PRECISE	5to3	NF1 (NM_001042492) - LLGL1 (NM_004140) rearrangement: c.5268+78:NF1_c.-1064: LLGL1dup			11525415	38116	70475	0	6
P-0064385-T01-IM7	SOMATIC	NF1	RAB11FIP4	17	17	29543375	29718795	Intron of NF1(+):2Kb after exon 13	5-UTR of RAB11FIP4(+):75bp before coding start		GRCh37	DELETION	10	18	Transcript Fusion {NF1:RAB11FIP4}	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.1527+1772:NF1_chr17:g.29718795del	yes	unknown	175420	65060	42688	0	18
P-0041549-T01-IM6	SOMATIC	NF1	NF1	17	17	7263421	29508314	Promoter of TMEM95(+):5Kb from tx start	Intron of NF1(+):125bp before exon 6		GRCh37	DELETION	10	8	Transcript Fusion {TMEM95:NF1}	PRECISE	3to5	NF1 (NM_001042492) rearrangement: c.587-126:NF1_chr17:g.7263421del	yes	unknown	22244893	182931	177713	0	12
P-0070059-T01-IM7	SOMATIC	NF2		22	22	24516811	30038201	Intron of CABIN1(+):1Kb after exon 28	Exon 4 of NF2(+)		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	NF2 (NM_000268) rearrangement: c.374:NF2_chr22:g.24516811inv			5521390	115934	140689	0	5
P-0033669-T01-IM6	SOMATIC	NF2		22	22	30003844	30038144	Intron of NF2(+):4Kb after exon 1	Intron of NF2(+):46bp before exon 4		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	NF2 (NM_000268) rearrangement: c.114+3743_c.364-47del			34300	3016	1254	0	78
P-0042814-T01-IM6	SOMATIC	NF2	NF2	22	22	30003449	30054459	Intron of NF2(+):3Kb after exon 1	Intron of NF2(+):206bp after exon 7		GRCh37	DUPLICATION	10	21	Duplication of 6 exons : in frame	PRECISE	5to3	NF2 (NM_000268) rearrangement: c.114+3348_c.675+206dup	yes	unknown	51010	7155	10859	0	22
P-0060263-T01-IM7	SOMATIC	NF2	ALMS1	22	2	30051490	73594692	Intron of NF2(+):92bp before exon 6	IGR: 18Kb before ALMS1(+)		GRCh37	TRANSLOCATION	10	27	NF2-intragenic	PRECISE	5to5	NF2 (NM_000268) rearrangement: t(2;22)(p13.1;q12.2)(chr2:g.73594692::chr22:g.30051490)	yes	unknown	0	0	0	0	28
P-0077835-T02-IM7	SOMATIC	NF2	REC114	22	15	30067682	73689129	Intron of NF2(+):132bp before exon 11	IGR: 46Kb before REC114(+)		GRCh37	TRANSLOCATION	10	73	NF2-intragenic	PRECISE	5to3	NF2 (NM_000268) rearrangement: t(15;22)(q24.1;q12.2)(chr15:g.73689129::chr22:g.30067682)	yes	unknown	0	0	0	0	73
P-0012456-T01-IM5	SOMATIC	NF2		22	22	30069129	35955753	Intron of NF2(+): 129bp before exon 12	IGR: 6Kb after RASD2(+)		GRCh37	INVERSION			NF2-intragenic	PRECISE	5to5	NF2 (NM_000268) Rearrangement : c.1123-129_22:35955753inv			5886624	16279	20443	0	15
P-0065818-T02-IM7	SOMATIC	NF2	EWSR1	22	22	29691985	30077174	Intron of EWSR1(+):243bp before exon 13	Intron of NF2(+):253bp before exon 15		GRCh37	DUPLICATION	10	12	Protein Fusion: out of frame  {NF2:EWSR1}	PRECISE	5to3	NF2 (NM_000268) - EWSR1 (NM_013986) rearrangement: c.1575-254:NF2_c.1180-244:EWSR1dup	yes	unknown	385189	35575	50341	0	13
P-0040327-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098131	178100975	Intron of NFE2L2(-):64bp before exon 3	Intron of NFE2L2(-):2Kb before exon 2		GRCh37	DELETION	10	24	Deletion of 1 exon : in frame	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-1976_c.313-64del	yes	unknown	2844	1668	2359	0	24
P-0055449-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098084	178099544	Intron of NFE2L2(-):17bp before exon 3	Intron of NFE2L2(-):545bp before exon 2		GRCh37	DELETION	10	20	Deletion of 1 exon : in frame	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-545_c.313-17del	yes	unknown	1460	2661	567	0	21
P-0068289-T01-IM7	SOMATIC	NFE2L2		2	2	178098714	178102372	Intron of NFE2L2(-):18bp after exon 2	Intron of NFE2L2(-):3Kb before exon 2		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-3373_c.312+19del			3658	1678	1130	0	26
P-0004410-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098145	178102538	Intron of NFE2L2(-): 78bp before exon 3	Intron of NFE2L2(-): 4Kb before exon 2		GRCh37	DELETION	21	26	Deletion of 1 exon: in frame	PRECISE	3to5	NFE2L2(NM_006164)  Rearrangement :  c.313-78_c.46-3539del	yes	unknown	4393	1809	897	0	22
P-0024793-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097361	178102657	Intron of NFE2L2(-):50bp before exon 4	Intron of NFE2L2(-):4Kb before exon 2		GRCh37	DELETION	0	7	Deletion of 2 exons : in frame	IMPPRECISE	3to5	NFE2L2 (NM_006164) Rearrangement : c.46-3658_c.403-50del	yes	unknown	5296	3791	3158	0	7
P-0057487-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097436	178103295	Intron of NFE2L2(-):125bp before exon 4	Intron of NFE2L2(-):4Kb before exon 2		GRCh37	DELETION	10	15	Deletion of 2 exons : in frame	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-4296_c.403-125del	yes	unknown	5859	3206	4204	0	15
P-0058477-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178097912	178102331	Intron of NFE2L2(-):65bp after exon 3	Intron of NFE2L2(-):3Kb before exon 2		GRCh37	DELETION	6	4	Deletion of 2 exons : in frame	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-3332_c.402+66del	yes	unknown	4419	2896	3585	0	4
P-0023321-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178096647	178129731	Exon 5 of NFE2L2(-)	5-UTR of NFE2L2(-):34Kb before coding start		GRCh37	DELETION	10	14	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.684_c.-427del	yes	unknown	33084	9365	13014	0	15
P-0019966-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098782	178114274	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):15Kb after exon 1		GRCh37	DELETION	10	20	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement:  c.45+14986_c.263del	yes	unknown	15492	1583	1744	0	21
P-0024229-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098972	178102197	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):3Kb before exon 2		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement:  c.46-3198_c.73del	yes	unknown	3225	257	247	0	16
P-0033975-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098875	178103924	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):5Kb before exon 2		GRCh37	DELETION	9	7	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-4925_c.170del	yes	unknown	5049	538	684	0	7
P-0032187-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098939	178101232	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):2Kb before exon 2		GRCh37	DELETION	10	40	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) Rearrangement:  c.106_c.46-2233del	yes	unknown	2293	351	516	0	45
P-0057944-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098790	178118963	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):10Kb after exon 1		GRCh37	DELETION	10	63	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.45+10297_c.255del	yes	unknown	20173	1213	1312	0	66
P-0050938-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098849	178113475	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):14Kb before exon 2		GRCh37	DELETION	10	40	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-14476_c.196del	yes	unknown	14626	872	919	0	41
P-0074067-T02-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098804	178101902	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):3Kb before exon 2		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-2903_c.241del	yes	unknown	3098	1269	387	0	22
P-0059154-T01-IM7	SOMATIC	NFE2L2		2	2	178098786	178104765	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):6Kb before exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-5766_c.259del			5979	1338	1785	0	36
P-0010334-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098889	178102017	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-): 3Kb before exon 2		GRCh37	DELETION	60	41	Deletion within transcript: mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement : c.46-3018_156del	yes	unknown	3128	647	566	0	41
P-0012587-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098004	178105981	Exon 3 of NFE2L2(-)	Intron of NFE2L2(-): 7Kb before exon 2		GRCh37	DELETION	21	17	Deletion within transcript: mid-exon	PRECISE	3to5	NFE2L2 (NM_006164) rearrangement: c.46-6982_c.376del	yes	unknown	7977	3899	5113	0	17
P-0033848-T01-IM6	SOMATIC	NFE2L2		2	2	178097118	178119835	Intron of NFE2L2(-):1bp after exon 4	Intron of NFE2L2(-):9Kb after exon 1		GRCh37	DUPLICATION			Duplication of 3 exons : in frame	IMPPRECISE	5to3	NFE2L2 (NM_006164) rearrangement: c.45+9425_c.594+2dup			22717	4656	5564	0	8
P-0040544-T01-IM6	SOMATIC	NFE2L2	NFE2L2	13	2	63941965	178096192	IGR: 185Kb before LINC00376(-)	Exon 5 of NFE2L2(-)		GRCh37	TRANSLOCATION	10	7	NFE2L2-intragenic	PRECISE	5to5	NFE2L2 (NM_006164) rearrangement: t(2;13)(q31.2;q21.31)(chr2:g.178096192::chr13:g.63941965)	yes	unknown	0	0	0	0	7
P-0059154-T01-IM7	SOMATIC	NFE2L2									GRCh37				NFE2L2-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   NFE2L2 exon 2 skipping (NM_006164). PMID: 27568559	yes	unknown					
P-0043747-T02-IM6	SOMATIC	NFE2L2									GRCh37				NFE2L2-intragenic - Archer			POSITIVE FOR THE FOLLOWING GENE VARIANT TRANSCRIPT IN THE INVESTIGATIONAL PANEL: NFE2L2 (NM_006164) Exons 2 and 3 deletion. PMID: 27568559. NEGATIVE FOR GENE FUSIONS IN THE CLINICALLY VALIDATED PANEL	yes	unknown					
P-0059478-T01-IM7	SOMATIC	NFE2L2									GRCh37				NFE2L2-intragenic - Archer			POSITIVE FOR THE FOLLOWING ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:   NFE2L2 exon 2 skipping (NM_006164).	yes	unknown					
P-0062729-T02-IM7	SOMATIC	NFIA	BRAF								GRCh37				NFIA-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NFIA-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes NFIA Exon8 (NM_001145512) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0019600-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35872842	35876797	Intron of NFKBIA(-):53bp after exon 2	Promoter of NFKBIA(-):6Kb from tx start		GRCh37	INVERSION	10	29	Antisense Fusion	PRECISE	5to5	NFKBIA (NM_020529) Rearrangement : c.-2947_ c.336+54inv	yes	unknown	3955	2311	5586	0	32
P-0016991-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35871767	35874901	Exon 5 of NFKBIA(-)	Promoter of NFKBIA(-):4Kb from tx start		GRCh37	DELETION	10	3	Deletion within transcript : mid-exon	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.739_c.-1051del	yes	unknown	3134	4899	10180	0	3
P-0050950-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35869306	35871252	Promoter of NFKBIA(-):1Kb from tx start	Exon 6 of NFKBIA(-)		GRCh37	DELETION	0	8	Deletion within transcript : mid-exon	IMPPRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.921:NFKBIA_chr14:g.35869306del	yes	unknown	1946	553	735	0	8
P-0080411-T02-IM7	SOMATIC	NFKBIA		14	14	35871219	35872985	Exon 6 of NFKBIA(-)	Exon 2 of NFKBIA(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.247_c.954del			1766	5937	7352	0	31
P-0015294-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35872104	35888329	Intron of NFKBIA(-): 39bp before exon 4	IGR: 18Kb before NFKBIA(-)		GRCh37	DELETION	3	16	NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.548-39_chr14:g.35888329del	yes	unknown	16225	5804	3660	0	14
P-0038133-T02-IM6	SOMATIC	NFKBIA	LLPH	14	12	35873769	66469859	Exon 1 of NFKBIA(-)	IGR: 47Kb before LLPH(-)		GRCh37	TRANSLOCATION	10	39	NFKBIA-intragenic	PRECISE	3to3	NFKBIA (NM_020529) rearrangement: t(12,14)(q14.3;q13.2)(chr12:g.66469859::chr14:g.35873769)	yes	unknown	0	0	0	0	39
P-0054039-T01-IM6	SOMATIC	NFKBIA	SSTR1	14	14	35871292	38548710	Intron of NFKBIA(-):26bp before exon 6	IGR: 128Kb before SSTR1(+)		GRCh37	DELETION	10	28	NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.907-26:NFKBIA_chr14:g.38548710del	yes	unknown	2677418	43565	43951	0	28
P-0064760-T01-IM7	SOMATIC	NFKBIA	NFKBIA	14	14	35871731	35878298	Exon 5 of NFKBIA(-)	IGR: 8Kb before NFKBIA(-)		GRCh37	DELETION	10	26	NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.775:NFKBIA_chr14:g.35878298del	yes	unknown	6567	6727	4123	0	29
P-0066691-T01-IM7	SOMATIC	NFKBIA	LINC00615	14	12	35871830	91170272	Exon 5 of NFKBIA(-)	IGR: 142Kb before LINC00615(+)		GRCh37	TRANSLOCATION	10	30	NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: t(12;14)(q21.33;q13.2)(chr12:g.91170272::chr14:g.35871830)	yes	unknown	0	0	0	0	37
P-0082145-T01-IM7	SOMATIC	NFKBIA		14	14	35871702	35878407	Exon 5 of NFKBIA(-)	IGR: 8Kb before NFKBIA(-)		GRCh37	DELETION			NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.804:NFKBIA_chr14:g.35878407del			6705	6242	9360	0	75
P-0006808-T01-IM5	SOMATIC	NFKBIA		14	14	35872430	49675988	Exon 3 of NFKBIA(-)	IGR: 368Kb before RPS29(-)		GRCh37	DELETION			NFKBIA-intragenic	PRECISE	3to5	NFKBIA(NM_020529) Rearrangement :  c.473_chr14:g.49675988del			13803558	55889	63797	0	94
P-0021679-T01-IM6	SOMATIC	NFKBIA		14	14	35872922	41759428	Exon 2 of NFKBIA(-)	IGR: 317Kb before LRFN5(+)		GRCh37	INVERSION			NFKBIA-intragenic	PRECISE	3to3	NFKBIA (NM_020529) rearrangement: c.310_chr14:g.:41759428inv			5886506	49424	258598	0	37
P-0026033-T01-IM6	SOMATIC	NFKBIA		14	14	35873103	36803740	Intron of NFKBIA(-):99bp before exon 2	IGR: 36Kb before MBIP(-)		GRCh37	DELETION			NFKBIA-intragenic	IMPPRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.228-99:NFKBIA_chr14:g.36803740del			930637	1833	4552	0	5
P-0088996-T02-IM7	SOMATIC	NFKBIA		14	14	35870724	35871732	3-UTR of NFKBIA(-):494bp after coding stop	Exon 5 of NFKBIA(-)		GRCh37	DELETION			NFKBIA-intragenic	PRECISE	3to5	NFKBIA (NM_020529) rearrangement: c.774:NFKBIA_chr14:g.35870724del			1008	1457	2686	0	45
P-0042732-T03-IM7	SOMATIC	NFU1	XPO1	2	2	61719137	69663866	Intron of XPO1(-):32bp after exon 16	Intron of NFU1(-):626bp after exon 1		GRCh37	DELETION	0	22	Protein Fusion: out of frame  {NFU1:XPO1}	IMPPRECISE	3to5	NFU1 (NM_001002755) - XPO1 (NM_003400) rearrangement: c.62+627:NFU1_c.1887+33:XPO1del	yes	unknown	7944729	53641	77037	0	101
P-0021975-T01-IM6	SOMATIC	NID2	FGFR2	14	10	52482743	123240637	Intron of NID2(-):750bp before exon 15	Intron of FGFR2(-):1Kb before exon 18		GRCh37	TRANSLOCATION	10	103	Protein Fusion: out of frame  {NID2:FGFR2}	PRECISE	5to3	NID2 (NM_007361) - FGFR2 (NM_000141) rearrangement: t(10;14)(q26.13;q22.1)(chr10:g.123240637::chr14:g.52482743)	yes	unknown	0	0	0	0	123
P-0021105-T01-IM6	SOMATIC	NKAIN1	CDKN2C	1	1	31666206	51439485	Intron of NKAIN1(-):5Kb before exon 2	Intron of CDKN2C(+):79bp before exon 2		GRCh37	INVERSION			Protein Fusion: in frame  {NKAIN1:CDKN2C}	PRECISE	5to5	NKAIN1 (NM_024522) - CDKN2C (NM_078626) rearrangement: c.55-5172:NKAIN1_c.130-80:CDKN2Cinv			19773279	263628	221977	0	2
P-0051356-T01-IM6	SOMATIC	NKAIN3	ARID2	12	8	46245466	63337990	Exon 15 of ARID2(+)	Intron of NKAIN3(+):154Kb before exon 2		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {NKAIN3:ARID2}	PRECISE	5to3	NKAIN3 (NM_173688) - ARID2 (NM_152641) rearrangement: t(8;12)(q12.3;q12)(chr8:g.63337990::chr12:g.46245466)			0	0	0	0	102
P-0030387-T02-IM7	SOMATIC	NKX2-1	NKX2-1	14	14	36987343	36989667	Intron of NKX2-1(-):118bp before exon 3	Promoter of NKX2-1(-):4Kb from tx start		GRCh37	DELETION	10	12	Deletion within transcript	PRECISE	3to5	NKX2-1 (NM_001079668) rearrangement: c.464-118:NKX2-1_chr14:g.36989667del	yes	unknown	2324	4391	3205	0	13
P-0076943-T01-IM7	SOMATIC	NKX2-1	FBXO33	14	14	36988321	39862373	Exon 2 of NKX2-1(-)	IGR: 3Kb before FBXO33(-)		GRCh37	DELETION	0	25	FBXO33-NKX2 fusion	IMPPRECISE	3to5	NKX2-1 (NM_001079668) rearrangement: c.332:NKX2-1_chr14:g.39862373del	yes	unknown	2874052	35608	868843	0	26
P-0036867-T01-IM6	SOMATIC	NKX2-1	NKX2-1	14	14	36676003	36986915	IGR: 71Kb before PTCSC3(-)	Exon 3 of NKX2-1(-)		GRCh37	DELETION			NKX2-NKX2-1 Fusion	PRECISE	3to5	NKX2-1 (NM_001079668) Rearrangement : c.774_chr14:g.36676003del			310912	3530	2829	0	178
P-0048437-T01-IM6	SOMATIC	NKX2-1	NKX2-1	14	14	35725220	36988393	Intron of KIAA0391(+):11Kb before exon 4	Exon 2 of NKX2-1(-)		GRCh37	INVERSION	10	17	Protein Fusion: mid-exon  {NKX2-1:KIAA0391}	PRECISE	5to5	NKX2-1 (NM_001079668) - KIAA0391 (NM_014672) rearrangement: c.260:NKX2-1_c.1276-10713:KIAA0391inv	yes	unknown	1263173	17354	106107	0	63
P-0053984-T01-IM6	SOMATIC	NKX2-1	NKX2-8	14	14	36988236	37048096	Exon 2 of NKX2-1(-)	Promoter of NKX2-8(-):1Kb from tx start		GRCh37	DELETION	10	49	Protein Fusion: mid-exon  {NKX2-8:NKX2-1}	PRECISE	3to5	NKX2-1 (NM_001079668) rearrangement: c.417:NKX2-1_chr14:g.37048096del	yes	unknown	59860	6689	3241	0	56
P-0027251-T01-IM6	SOMATIC	NKX2-1	NKX2-8	14	14	36987236	37047558	Intron of NKX2-1(-):11bp before exon 3	Promoter of NKX2-8(-):2Kb from tx start		GRCh37	DELETION			Transcript Fusion {NKX2-8:NKX2-1}	PRECISE	3to5	NKX2-1 (NM_001079668) rearrangement: c.464-11:NKX2-1_chr14:g.37047558del			60322	5819	2976	0	181
P-0051577-T02-IM7	SOMATIC	NKX3-1	KCNU1	8	8	23539154	36918959	Intron of NKX3-1(-):2bp before exon 2	IGR: 277Kb before KCNU1(+)		GRCh37	DELETION	10	7	KCNU1-NKX3 fusion	PRECISE	3to5	NKX3-1 (NM_006167) rearrangement: c.287-2:NKX3-1_chr8:g.36918959del	yes	unknown	13379805	55350	36027	0	7
P-0073478-T01-IM7	SOMATIC	NKX3-1	LINC00824	8	8	23539017	129688748	Exon 2 of NKX3-1(-)	IGR: 117Kb before LINC00824(-)		GRCh37	INVERSION	10	57	LINC00824-NKX3 fusion	PRECISE	3to3	NKX3-1 (NM_006167) rearrangement: c.422:NKX3-1_chr8:g.129688748inv	yes	unknown	106149731	603249	551885	0	53
P-0050350-T01-IM6	SOMATIC	NKX3-1	NKX3-1	17	8	41654143	23539161	IGR: 49Kb before ETV4(-)	Intron of NKX3-1(-):9bp before exon 2		GRCh37	TRANSLOCATION	10	9	NKX3-1-NKX3 fusion	PRECISE	3to3	NKX3-1 (NM_006167) rearrangement: t(8;17)(p21.2;q21.31)(chr8:g.23539161::chr17:g.41654143)	yes	unknown	0	0	0	0	8
P-0032550-T01-IM6	SOMATIC	NKX3-1	MYC	8	8	23538831	128748785	Exon 2 of NKX3-1(-)	5-UTR of MYC(+):54bp before coding start		GRCh37	DELETION			NKX3-MYC Fusion	PRECISE	3to5	NKX3-1 (NM_006167) - MYC (NM_002467) rearrangement: c.383:NKX3-1_c.-55:MYCdel			105209954	334575	432837	0	63
P-0069804-T01-IM7	SOMATIC	NLGN3	MED12	X	X	70354801	70373028	Intron of MED12(+):103bp after exon 35	Intron of NLGN3(+):2Kb before exon 3		GRCh37	DUPLICATION	7	11	Protein Fusion: out of frame  {NLGN3:MED12}	PRECISE	5to3	NLGN3 (NM_181303) - MED12 (NM_005120) rearrangement: c.518-299:NLGN3_c.4863+103:MED12dup	yes	unknown	18227	12913	28968	0	11
P-0014455-T01-IM6	SOMATIC	NLRC3	CREBBP	16	16	3604897	3820505	Intron of NLRC3(-): 571bp before exon 9	Intron of CREBBP(-): 66bp after exon 14		GRCh37	DELETION	29	33	Protein fusion: out of frame (CREBBP-NLRC3)	PRECISE	3to5	CREBBP (NM_004380) - NLRC3(NM_178844) Rearrangement : c.2880+66:CREBBP_c.2184-571:NLRC3del	yes	unknown	215608	160138	76819	0	32
P-0029920-T01-IM6	SOMATIC	NME1-NME2	PRKAR1A	17	17	49239734	66511671	Intron of NME1-NME2(+):1Kb after exon 4	Exon 2 of PRKAR1A(+)		GRCh37	DUPLICATION	10	28	Protein Fusion: mid-exon  {PRKAR1A:NME1-NME2}	PRECISE	5to3	PRKAR1A (NM_212471) - NME1-NME2 (NM_001018136) rearrangement: c.131:PRKAR1A_c.341+1101:NME1-NME2dup	yes	unknown	17271937	140149	341402	0	28
P-0001352-T01-IM3	SOMATIC	None	NOTCH2	1	1	120465426	120560448	Intron of NOTCH2(-): 25bp before exon 27	Intron of NOTCH2(-): 12Kb after exon 2		GRCh37	DELETION	33	26	Deletion of 24 exons: in frame	PRECISE	3to5	None	yes	unknown	95022	55391	47111	0	26
P-0004850-T01-IM5	SOMATIC	None		19	19	3113211	10461378	Intron of GNA11(+): 117bp before exon 3	3-UTR of TYK2(-): 132bp after coding stop		GRCh37	DUPLICATION			None-intragenic	PRECISE	5to3	None			7348167	360636	313410	0	16
P-0069368-T01-IM7	SOMATIC	None		11	1	28455787	11735702	IGR: 43Kb before MIR8068(-)	Intron of MAD2L2(-):12bp after exon 7		GRCh37	TRANSLOCATION			None-intragenic	PRECISE	5to3	None			0	0	0	0	8
P-0084414-T01-IM7	SOMATIC	None		9	9	21838148	22185659	Intron of MTAP(+):139bp after exon 5	IGR: 183Kb before CDKN2B(-)		GRCh37	DELETION			None-intragenic	IMPPRECISE	3to5	None			347511	24260	25813	0	22
P-0034908-T01-IM6	SOMATIC	NOS1AP	DDR2	1	1	162303312	162725168	Intron of NOS1AP(+):397bp after exon 5	Intron of DDR2(+):75bp after exon 6		GRCh37	DUPLICATION	0	41	Protein Fusion: out of frame  {DDR2:NOS1AP}	IMPPRECISE	5to3	DDR2 (NM_006182) - NOS1AP (NM_014697) rearrangement: c.565+75:DDR2_c.453+397:NOS1APdup	yes	unknown	421856	5818	22044	0	42
P-0019108-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139399927	139418810	Exon 25 of NOTCH1(-)	Intron of NOTCH1(-):379bp before exon 3		GRCh37	INVERSION	10	7	Antisense Fusion	PRECISE	5to5	NOTCH1 (NM_017617)  Rearrangement : c.141-37_c.4421del	yes	unknown	18883	53636	45594	0	7
P-0075685-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	37283963	139391559	Intron of ZCCHC7(+):18Kb before exon 3	Exon 34 of NOTCH1(-)		GRCh37	DELETION	5	2	Antisense Fusion	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.6632:NOTCH1_chr9:g.37283963del	yes	unknown	102107596	452341	251113	0	2
P-0055533-T01-IM6	SOMATIC	NOTCH1		9	9	139404567	139406689	Intron of NOTCH1(-):154bp before exon 18	Intron of NOTCH1(-):783bp after exon 15		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.2467+784_c.2741-154del			2122	5557	6191	0	17
P-0089265-T01-IM7	SOMATIC	NOTCH1		9	9	139401522	139402605	Intron of NOTCH1(-):97bp before exon 23	Intron of NOTCH1(-):14bp before exon 21		GRCh37	DELETION			Deletion of 2 exons : in frame	IMPPRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.3326-14_c.3644-97del			1083	4075	5355	0	29
P-0068921-T01-IM7	SOMATIC	NOTCH1		9	9	139397381	139423724	Intron of NOTCH1(-):252bp after exon 27	Intron of NOTCH1(-):5Kb before exon 3		GRCh37	DELETION			Deletion of 25 exons : out of frame	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.141-5293_c.5167+253del			26343	55121	9471	0	79
P-0063596-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139399182	139440339	Exon 26 of NOTCH1(-)	Promoter of NOTCH1(-):51Kb from tx start		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.4961:NOTCH1_chr9:g.139440339del	yes	unknown	41157	57471	56584	0	31
P-0080502-T01-IM7	SOMATIC	NOTCH1		9	9	139399552	139409054	Exon 26 of NOTCH1(-)	Exon 13 of NOTCH1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.2115_c.4591del			9502	27682	18742	0	14
P-0020644-T01-IM6	SOMATIC	NOTCH1		9	9	139397700	139399962	Exon 27 of NOTCH1(-)	Exon 25 of NOTCH1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.4386_c.5101del			2262	14305	7096	0	71
P-0068574-T01-IM7	SOMATIC	NOTCH1		9	9	139408979	139412008	Exon 13 of NOTCH1(-)	Intron of NOTCH1(-):171bp before exon 9		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.1442-171_c.2190del			3029	4739	10506	0	24
P-0047433-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139403318	139407938	Intron of NOTCH1(-):3bp after exon 19	Exon 14 of NOTCH1(-)		GRCh37	DUPLICATION	10	379	Duplication within transcript : mid-exon	PRECISE	5to3	NOTCH1 (NM_017617) rearrangement: c.2259_c.3171+4dup	yes	unknown	4620	11960	32595	0	434
P-0068118-T01-IM7	SOMATIC	NOTCH1	EGFL7	9	9	139410166	139565586	Exon 11 of NOTCH1(-)	Intron of EGFL7(+):120bp after exon 7		GRCh37	DELETION	10	7	EGFL7-NOTCH1 fusion	PRECISE	3to5	NOTCH1 (NM_017617) - EGFL7 (NM_201446) rearrangement: c.1672:NOTCH1_c.636+120:EGFL7del	yes	unknown	155420	40561	40007	0	35
P-0025405-T01-IM6	SOMATIC	NOTCH1	AGPAT2								GRCh37				NOTCH1-AGPAT2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NOTCH1-AGPAT2 fusion. Note: The rearrangement is an in-frame fusion between genes NOTCH1 Exon2 (NM_017617) and AGPAT2 Exon2 (NM_006412).	yes	unknown					
P-0058859-T01-IM7	SOMATIC	NOTCH1	CACNA1B								GRCh37				NOTCH1-CACNA1B Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NOTCH1-CACNA1B fusion. Note: The rearrangement is an in-frame fusion between genes NOTCH1 Exon2 (NM_017617.3) and CACNA1B Exon14 (NM_000718). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0029839-T01-IM6	SOMATIC	NOTCH1	EXD3								GRCh37				NOTCH1-EXD3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NOTCH1-EXD3 fusion. Note: The rearrangement is an in-frame fusion between genes NOTCH1 Exon2 (NM_017617) and EXD3 Exon2 (NM_017820). The functional significance is unknown.	yes	unknown					
P-0014892-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139383644	139417282	IGR: 5Kb before NOTCH1(-)	Intron of NOTCH1(-): 20bp after exon 4		GRCh37	DELETION	26	13	NOTCH1-intragenic	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: chr9:g.139383644_c.742+20del	yes	unknown	33638	112351	101294	0	13
P-0034818-T01-IM6	SOMATIC	NOTCH1	DPP7	9	9	139402788	140014051	Exon 20 of NOTCH1(-)	IGR: 9Kb before DPP7(-)		GRCh37	DUPLICATION	4	2	NOTCH1-intragenic	PRECISE	5to3	NOTCH1 (NM_017617) rearrangement: c.3221:NOTCH1_chr9:g.140014051dup	yes	unknown	611263	75263	103563	0	2
P-0050758-T01-IM6	SOMATIC	NOTCH1	NOTCH1	11	9	96145388	139397648	IGR: 22Kb before JRKL(+)	Exon 27 of NOTCH1(-)		GRCh37	TRANSLOCATION	0	5	NOTCH1-intragenic	IMPPRECISE	3to5	NOTCH1 (NM_017617) rearrangement: t(9;11)(q34.3;q21)(chr9:g.139397648::chr11:g.96145388)	yes	unknown	0	0	0	0	5
P-0048704-T02-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	138997555	139391640	IGR: 9Kb before C9orf69(-)	Exon 34 of NOTCH1(-)		GRCh37	DELETION	8	9	NOTCH1-intragenic	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: c.6551:NOTCH1_chr9:g.138997555del	yes	unknown	394085	11891	18176	0	9
P-0031936-T01-IM6	SOMATIC	NOTCH1		13	9	73635766	139410553	Intron of KLF5(+):232bp before exon 2	Intron of NOTCH1(-):7bp before exon 10		GRCh37	TRANSLOCATION			NOTCH1-intragenic	PRECISE	5to3	NOTCH1 (NM_017617) rearrangement: t(9;13)(q34.3;q22.1)(chr9:g.139410553::chr13:g.73635766)			0	0	0	0	24
P-0026062-T01-IM6	SOMATIC	NOTCH1									GRCh37				NOTCH1-intragenic - Archer			POSITIVE FOR AN ONCOGENIC ISOFORM IN THE INVESTIGATIONAL PANEL:  Deletion of NOTCH1 exons 3-27 (NM_017617).	yes	unknown					
P-0068921-T01-IM7	SOMATIC	NOTCH1									GRCh37				NOTCH1-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: NOTCH1 exon 3- exon 27 deletion (NM_0017617).  Note: The intragenic deletion of NOTCH1 RNA transcript is similar to that detected on a DNA level by corresponding MSK-IMPACT results M21-29250. PMID: 22101766	yes	unknown					
P-0065080-T02-IM7	SOMATIC	NOTCH1	PGM2								GRCh37				NOTCH1-PGM2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NOTCH1-PGM2 fusion. Note: The rearrangement is an in-frame fusion between genes NOTCH1 Exon2 (NM_017617.3) and PGM2 Exon1 (NM_018290). Note1: Functional significance of this event is unknown.	yes	unknown					
P-0025405-T01-IM6	SOMATIC	NOTCH1	AGPAT2	9	9	139399952	139574779	Exon 25 of NOTCH1(-)	Intron of AGPAT2(-):3Kb before exon 2		GRCh37	DUPLICATION	10	2	Protein Fusion: mid-exon  {NOTCH1:AGPAT2}	PRECISE	5to3	NOTCH1 (NM_017617) - AGPAT2 (NM_006412) rearrangement: c.4396:NOTCH1_c.183-2771:AGPAT2dup	yes	unknown	174827	51507	70635	0	3
P-0026062-T01-IM6	SOMATIC	NOTCH1	SEC16A	9	9	139352799	139390661	Intron of SEC16A(-):763bp before exon 18	Exon 34 of NOTCH1(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {NOTCH1:SEC16A}	PRECISE	3to5	NOTCH1 (NM_017617) - SEC16A (NM_014866) rearrangement: c.7530:NOTCH1_c.5410-763:SEC16Adel			37862	2191	2173	0	203
P-0075964-T01-IM7	SOMATIC	NOTCH1	SHC3	9	9	91756660	139390675	Intron of SHC3(-):29Kb before exon 2	Exon 34 of NOTCH1(-)		GRCh37	DELETION	10	65	Protein Fusion: mid-exon  {NOTCH1:SHC3}	PRECISE	3to5	NOTCH1 (NM_017617) - SHC3 (NM_016848) rearrangement: c.7516:NOTCH1_c.475-29119:SHC3del	yes	unknown	47634015	241995	544728	0	67
P-0029151-T01-IM6	SOMATIC	NOTCH1	EXD3	9	9	139397461	140209349	Intron of NOTCH1(-):172bp after exon 27	Intron of EXD3(-):5Kb before exon 20		GRCh37	DUPLICATION	10	81	Protein Fusion: out of frame  {NOTCH1:EXD3}	PRECISE	5to3	NOTCH1 (NM_017617) - EXD3 (NM_017820) rearrangement: c.5167+173:NOTCH1_c.2185-5197:EXD3dup	yes	unknown	811888	75763	156589	0	87
P-0068323-T01-IM7	SOMATIC	NOTCH1	SORBS2	9	4	139397389	186674454	Intron of NOTCH1(-):244bp after exon 27	5-UTR of SORBS2(-):166Kb before coding start		GRCh37	TRANSLOCATION	10	17	Transcript Fusion {SORBS2:NOTCH1}	PRECISE	3to5	NOTCH1 (NM_017617) rearrangement: t(4;9)(q35.1;q34.3)(chr4:g.186674454::chr9:g.139397389)	yes	unknown	0	0	0	0	17
P-0004354-T01-IM5	SOMATIC	NOTCH2	NOTCH2	1	1	120480048	120482069	Exon 21 of NOTCH2(-)	Intron of NOTCH2(-): 1Kb after exon 19		GRCh37	INVERSION	23	12	Antisense fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement (2021bp): c.3183+1109_c.3379inv	yes	unknown	2021	1152	2151	0	12
P-0040225-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120497617	120503095	Intron of NOTCH2(-):45bp after exon 13	Intron of NOTCH2(-):970bp before exon 12		GRCh37	INVERSION	6	6	Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.1916-970_c.2219+46inv	yes	unknown	5478	2385	3292	0	6
P-0043684-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	114308942	120458107	Exon 7 of RSBN1(-)	Exon 34 of NOTCH2(-)		GRCh37	INVERSION	10	107	Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.7238:NOTCH2_chr1:g.114308942inv	yes	unknown	6149165	29624	45130	0	125
P-0064821-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120468290	120484474	Exon 25 of NOTCH2(-)	Intron of NOTCH2(-):97bp before exon 18		GRCh37	INVERSION	10	27	Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.2753-97_c.4149inv	yes	unknown	16184	15461	15800	0	36
P-0078903-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120465340	120474243	Exon 27 of NOTCH2(-)	Intron of NOTCH2(-):2Kb before exon 23		GRCh37	INVERSION	8	4	Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.3656-2408_c.4921inv	yes	unknown	8903	9485	18459	0	4
P-0023899-T01-IM6	SOMATIC	NOTCH2		1	1	7232798	120491589	Intron of CAMTA1(+):77Kb before exon 5	Intron of NOTCH2(-):40bp after exon 16		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.2599+41:NOTCH2_chr1:g.7232798del			113258791	898634	719898	0	8
P-0027662-T01-IM6	SOMATIC	NOTCH2		6	1	109700010	120462040	Intron of CD164(-):771bp after exon 2	Exon 31 of NOTCH2(-)		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q21)(chr1:g.120462040::chr6:g.109700010)			0	0	0	0	21
P-0051356-T01-IM6	SOMATIC	NOTCH2		1	1	120462043	154735978	Exon 31 of NOTCH2(-)	Intron of KCNN3(-):8Kb after exon 3		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.5673:NOTCH2_chr1:g.154735978inv			34273935	63849	77789	0	80
P-0054117-T02-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120465403	120602050	Intron of NOTCH2(-):2bp before exon 27	Intron of NOTCH2(-):10Kb after exon 1		GRCh37	DELETION	0	14	Deletion of 25 exons : out of frame	IMPPRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.73+9898_c.4860-2del	yes	unknown	136647	32766	71575	0	16
P-0019262-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120524253	120529607	Intron of NOTCH2(-):5Kb after exon 5	Exon 5 of NOTCH2(-)		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.850_c.874+5330del	yes	unknown	5354	530	493	0	5
P-0049970-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120510244	120510763	Exon 8 of NOTCH2(-)	Exon 7 of NOTCH2(-)		GRCh37	DELETION	0	10	Deletion within transcript : mid-exon	IMPPRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.1201_c.1265del	yes	unknown	519	1124	847	0	10
P-0057229-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120462056	120487142	Exon 31 of NOTCH2(-)	Intron of NOTCH2(-):3Kb before exon 18		GRCh37	DELETION	10	32	Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.2753-2765_c.5660del	yes	unknown	25086	21403	15725	0	34
P-0070199-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120465394	120602994	Exon 27 of NOTCH2(-)	Intron of NOTCH2(-):9Kb after exon 1		GRCh37	DELETION	0	6	Deletion within transcript : mid-exon	IMPPRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.73+8954_c.4867del	yes	unknown	137600	35517	47464	0	6
P-0001909-T01-IM3	SOMATIC	NOTCH2	NOTCH2	1	1	120510099	120512418	Exon 8 of NOTCH2(-)	Intron of NOTCH2(-): 51bp before exon 6		GRCh37	DELETION	43	11	Deletion within transcript: mid-exon	PRECISE	3to5	NOTCH2 (NM_024408) Deletion: c.875-51_c.1410del	yes	unknown	2319	5114	3737	0	14
P-0027998-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120480437	120502169	Intron of NOTCH2(-):42bp after exon 20	Intron of NOTCH2(-):44bp before exon 12		GRCh37	DUPLICATION	10	48	Duplication of 9 exons : in frame	PRECISE	5to3	NOTCH2 (NM_024408) fusion: c.3337+43_c.1916-44dup	yes	unknown	21732	13697	21300	0	49
P-0076731-T02-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120479984	120505395	Exon 21 of NOTCH2(-)	Intron of NOTCH2(-):801bp after exon 11		GRCh37	DUPLICATION	10	7	Duplication within transcript : mid-exon	PRECISE	5to3	NOTCH2 (NM_024408) rearrangement: c.1915+802_c.3443dup	yes	unknown	25411	14379	22472	0	7
P-0004386-T01-IM5	SOMATIC	NOTCH2	NOTCH2	1	1	120455718	120458797	3-UTR of NOTCH2(-): 2Kb after coding stop	Exon 34 of NOTCH2(-)		GRCh37	INVERSION	82	102	NOTCH2-intragenic	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement : c.6548_*2211inv	yes	unknown	3079	6155	6016	0	110
P-0025980-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120465381	120492330	Exon 27 of NOTCH2(-)	Intron of NOTCH2(-):581bp before exon 16		GRCh37	INVERSION	10	13	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) Rearrangement : c.2480-581_c.4880inv	yes	unknown	26949	19018	39294	0	13
P-0038443-T01-IM6	SOMATIC	NOTCH2	EMBP1	1	1	120479974	121485135	Exon 21 of NOTCH2(-)	IGR: 224Kb before EMBP1(+)		GRCh37	INVERSION	10	36	NOTCH2-intragenic	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.3453:NOTCH2_chr1:g.121485135inv	yes	unknown	1005161	21919	46041	0	70
P-0056250-T02-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120496682	120497961	Intron of NOTCH2(-):371bp before exon 14	Intron of NOTCH2(-):106bp before exon 13		GRCh37	INVERSION	5	4	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.2027-106_c.2220-371inv	yes	unknown	1279	2008	1511	0	4
P-0057114-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120462085	120466442	Exon 31 of NOTCH2(-)	Exon 26 of NOTCH2(-)		GRCh37	INVERSION	10	53	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.4677_c.5631inv	yes	unknown	4357	9532	15135	0	53
P-0057527-T01-IM6	SOMATIC	NOTCH2	NOTCH2	16	1	80945124	120493502	IGR: 65Kb before CMC2(-)	Intron of NOTCH2(-):42bp before exon 15		GRCh37	TRANSLOCATION	10	59	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: t(1;16)(p12;q23.2)(chr1:g.120493502::chr16:g.80945124)	yes	unknown	0	0	0	0	59
P-0060197-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120457573	120458970	3-UTR of NOTCH2(-):355bp after coding stop	Exon 34 of NOTCH2(-)		GRCh37	INVERSION	10	49	NOTCH2-intragenic	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.6375:NOTCH2_chr1:g.120457573inv	yes	unknown	1397	10105	10294	0	62
P-0062483-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	116960103	120510698	3-UTR of ATP1A1-AS1(-):1Kb after coding stop	Intron of NOTCH2(-):1bp after exon 7		GRCh37	DELETION	10	103	NOTCH2-intragenic	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.1264+2:NOTCH2_chr1:g.116960103del	yes	unknown	3550595	118832	112313	0	106
P-0062838-T01-IM7	SOMATIC	NOTCH2	NOTCH2	4	1	66835788	120479739	IGR: 300Kb before EPHA5-AS1(+)	Intron of NOTCH2(-):165bp after exon 21		GRCh37	TRANSLOCATION	10	16	NOTCH2-intragenic	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q13.2)(chr1:g.120479739::chr4:g.66835788)	yes	unknown	0	0	0	0	17
P-0063251-T02-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120434666	120465618	Promoter of ADAM30(-):1Kb from tx start	Intron of NOTCH2(-):217bp before exon 27		GRCh37	INVERSION	10	29	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.4860-217:NOTCH2_chr1:g.120434666inv	yes	unknown	30952	25245	33808	0	28
P-0065234-T01-IM7	SOMATIC	NOTCH2	NOTCH2	7	1	64779053	120459217	3-UTR of LOC441242(-):457Kb after coding stop	Exon 34 of NOTCH2(-)		GRCh37	TRANSLOCATION	10	11	NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: t(1;7)(p12;q11.21)(chr1:g.120459217::chr7:g.64779053)	yes	unknown	0	0	0	0	11
P-0015518-T01-IM6	SOMATIC	NOTCH2		2	1	104768940	120510213	IGR: 282Kb before LOC150568(+)	Exon 8 of NOTCH2(-)		GRCh37	TRANSLOCATION			NOTCH2-intragenic	PRECISE	5to5	NOTCH2 (NM_024408) Rearrangement : t(1,2)(p11.2,q12.1)(chr1:g.120510213::chr2:g.104768940)			0	0	0	0	43
P-0024296-T01-IM6	SOMATIC	NOTCH2		1	1	116787704	120468046	IGR: 128Kb before ATP1A1(+)	Exon 25 of NOTCH2(-)		GRCh37	DELETION			NOTCH2-intragenic	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: c.4393:NOTCH2_chr1:g.116787704del			3680342	42611	34767	0	136
P-0035533-T01-IM6	SOMATIC	NOTCH2		13	1	25683937	120465556	IGR: 14Kb before PABPC3(+)	Intron of NOTCH2(-):155bp before exon 27		GRCh37	TRANSLOCATION			NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: t(1;13)(p11.2;q12.13)(chr1:g.120465556::chr13:g.25683937)			0	0	0	0	5
P-0058925-T02-IM7	SOMATIC	NOTCH2		4	1	57364313	120480571	Intron of SRP72(+):2Kb before exon 18	Exon 20 of NOTCH2(-)		GRCh37	TRANSLOCATION			NOTCH2-intragenic	PRECISE	5to3	NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q12)(chr1:g.120480571::chr4:g.57364313)			0	0	0	0	5
P-0062171-T01-IM7	SOMATIC	NOTCH2		1	1	120437588	120459526	Exon 1 of ADAM30(-)	Intron of NOTCH2(-):209bp before exon 34		GRCh37	INVERSION			NOTCH2-intragenic	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.6028-209:NOTCH2_chr1:g.120437588inv			21938	10240	10085	0	33
P-0060067-T02-IM7	SOMATIC	NOTCH2	NRG1								GRCh37				NOTCH2-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NOTCH2-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes NOTCH2 Exon4 (NM_024408) and NRG1 Exon6 (NM_004495). (PMID: 30988082)	yes	unknown					
P-0049355-T01-IM6	SOMATIC	NOTCH2	NBPF20	1	1	120510014	144545453	Intron of NOTCH2(-):41bp after exon 8	Intron of NBPF20(+):279Kb before exon 53		GRCh37	INVERSION	10	7	Protein Fusion: in frame  {NOTCH2:NBPF20}	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.1453+42:NOTCH2_chr1:g.144545453inv	yes	unknown	24035439	8911	16368	0	11
P-0045617-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	96486979	120458815	5-UTR of LOC102723661(+):1Kb before coding start	Exon 34 of NOTCH2(-)		GRCh37	INVERSION	10	29	Protein Fusion: mid-exon  {LOC102723661:NOTCH2}	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.6530:NOTCH2_chr1:g.96486979inv	yes	unknown	23971836	56093	77709	0	29
P-0025783-T01-IM6	SOMATIC	NOTCH2		1	1	120465326	145075197	Exon 27 of NOTCH2(-)	Intron of NBPF20(+):238Kb before exon 54		GRCh37	INVERSION			Protein Fusion: mid-exon  {NBPF20:NOTCH2}	IMPPRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.4935:NOTCH2_chr1:g.145075197inv			24609871	37058	47999	0	11
P-0068090-T01-IM7	SOMATIC	NOTCH2	NBPF20	1	1	120460170	145108713	Intron of NOTCH2(-):117bp after exon 33	Intron of NBPF20(+):205Kb before exon 54		GRCh37	INVERSION	10	8	Protein Fusion: out of frame  {NOTCH2:NBPF20}	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: c.6027+118:NOTCH2_chr1:g.145108713inv	yes	unknown	24648543	62146	84093	0	10
P-0077488-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	119788622	120469437	5-UTR of LOC101929147(+):30Kb before coding start	Intron of NOTCH2(-):203bp before exon 24		GRCh37	INVERSION	6	4	Transcript Fusion {LOC101929147:NOTCH2}	PRECISE	3to3	NOTCH2 (NM_024408) rearrangement: c.3893-203:NOTCH2_chr1:g.119788622inv	yes	unknown	680815	34595	36925	0	4
P-0040985-T01-IM6	SOMATIC	NOTCH2	NOTCH2	6	1	64352374	120497534	5-UTR of PHF3(+):38Kb before coding start	Intron of NOTCH2(-):128bp after exon 13		GRCh37	TRANSLOCATION	10	11	Transcript Fusion {NOTCH2:PHF3}	PRECISE	5to5	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q12)(chr1:g.120497534::chr6:g.64352374)	yes	unknown	0	0	0	0	12
P-0015085-T01-IM6	SOMATIC	NOTCH3	MZF1	19	19	15308288	59077190	Intron of NOTCH3(-): 23bp after exon 2	Intron of MZF1(-): 2Kb before exon 6		GRCh37	INVERSION	32	10	Antisense fusion	PRECISE	5to5	NOTCH3 (NM_000435) - MZF1 (NM_003422) rearrangement: c.197+23:NOTCH3_c.773-2319:MZF1	yes	unknown	43768902	754971	814581	0	9
P-0026821-T05-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15291419	15292500	Intron of NOTCH3(-):72bp after exon 19	Exon 17 of NOTCH3(-)		GRCh37	INVERSION	0	6	Antisense Fusion	IMPPRECISE	5to5	NOTCH3 (NM_000435) Rearrangement: c.3142+73_c.2679inv	yes	unknown	1081	6580	12730	0	6
P-0063328-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	9769882	15276874	Intron of ZNF562(-):172bp after exon 3	Exon 30 of NOTCH3(-)		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: c.5391:NOTCH3_chr19:g.9769882inv	yes	unknown	5506992	256596	320852	0	67
P-0019412-T01-IM6	SOMATIC	NOTCH3		19	19	15287683	15295211	Intron of NOTCH3(-):652bp after exon 24	Exon 16 of NOTCH3(-)		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: c.4403+653_c.2461inv			7528	29591	16024	0	8
P-0046943-T01-IM6	SOMATIC	NOTCH3		19	9	15299695	95511808	Intron of NOTCH3(-):104bp after exon 8	Intron of BICD2(-):15Kb after exon 1		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: t(9;19)(q22.31;p13.12)(chr9:g.95511808::chr19:g.15299695)			0	0	0	0	12
P-0082911-T02-IM7	SOMATIC	NOTCH3		19	19	15296967	15298994	Intron of NOTCH3(-):477bp before exon 13	Intron of NOTCH3(-):51bp after exon 9		GRCh37	DELETION			Deletion of 3 exons : in frame	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.1492+52_c.1952-477del			2027	4041	6148	0	34
P-0049006-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15276865	15289426	Exon 30 of NOTCH3(-)	Intron of NOTCH3(-):207bp after exon 23		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.3837+208_c.5400del	yes	unknown	12561	16038	10222	0	16
P-0076090-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15293098	15296175	Intron of NOTCH3(-):486bp before exon 17	Exon 14 of NOTCH3(-)		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.2189_c.2567-486del	yes	unknown	3077	4570	5925	0	5
P-0033492-T01-IM6	SOMATIC	NOTCH3		19	19	15276243	15279315	Exon 31 of NOTCH3(-)	Intron of NOTCH3(-):1Kb before exon 29		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.5200-1093_c.5751del			3072	6248	7404	0	12
P-0081761-T02-IM7	SOMATIC	NOTCH3		19	19	15270058	15272216	Promoter of NOTCH3(-):385bp from tx start	Exon 33 of NOTCH3(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.6223:NOTCH3_chr19:g.15270058del			2158	4757	926	0	7
P-0038792-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15256497	15272297	IGR: 14Kb before NOTCH3(-)	Exon 33 of NOTCH3(-)		GRCh37	DELETION	10	265	NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: chr19:g.15256497_c.6142del	yes	unknown	15800	7241	6552	2	280
P-0037252-T01-IM6	SOMATIC	NOTCH3	BRD4	19	19	15281410	15407776	Intron of NOTCH3(-):46bp before exon 27	IGR: 50Kb before BRD4(-)		GRCh37	DELETION	10	35	NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.4892-46:NOTCH3_chr19:g.15407776del	yes	unknown	126366	82841	70648	0	37
P-0066848-T01-IM7	SOMATIC	NOTCH3	AKAP8	19	19	15284895	15418605	Exon 25 of NOTCH3(-)	IGR: 46Kb before AKAP8(-)		GRCh37	DELETION	7	4	NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.4720:NOTCH3_chr19:g.15418605del	yes	unknown	133710	68894	108775	0	4
P-0069683-T01-IM7	SOMATIC	NOTCH3	EPHX3	19	19	15311651	15323974	Exon 1 of NOTCH3(-)	IGR: 14Kb before EPHX3(-)		GRCh37	INVERSION	10	5	NOTCH3-intragenic	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: c.66:NOTCH3_chr19:g.15323974inv	yes	unknown	12323	1700	2212	0	5
P-0072567-T01-IM7	SOMATIC	NOTCH3	IDO2	19	8	15285023	39894839	Exon 25 of NOTCH3(-)	IGR: 102Kb before IDO2(+)		GRCh37	TRANSLOCATION	10	20	NOTCH3-intragenic	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: t(8;19)(p11.21;p13.12)(chr8:g.39894839::chr19:g.15285023)	yes	unknown	0	0	0	0	33
P-0076950-T01-IM7	SOMATIC	NOTCH3	CYP4F24P	19	19	15281558	15873326	Exon 26 of NOTCH3(-)	3-UTR of CYP4F24P(-):17Kb after coding stop		GRCh37	INVERSION	10	6	NOTCH3-intragenic	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: c.4815:NOTCH3_chr19:g.15873326inv	yes	unknown	591768	80977	33662	0	6
P-0019972-T03-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15266551	15272214	IGR: 4Kb before NOTCH3(-)	Exon 33 of NOTCH3(-)		GRCh37	DELETION	10	32	NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.6225:NOTCH3_chr19:g.15266551del	yes	unknown	5663	4188	9309	0	32
P-0004889-T01-IM5	SOMATIC	NOTCH3		19	19	15290032	15416060	Exon 22 of NOTCH3(-)	IGR: 48Kb before AKAP8(-)		GRCh37	DELETION			NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement:c.3522_chr19:g.15416060del			126028	91315	67906	0	23
P-0008948-T01-IM5	SOMATIC	NOTCH3		19	17	15298008	66644028	Exon 11 of NOTCH3(-)	IGR: 47Kb after FAM20A(-)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	IMPRECISE	5to3	NOTCH3 (NM_000435) Rearrangement : t(17;19)(17q24.2;19p13.12)(chr17:g.66644028::chr19:g.15298008)			0	0	0	0	31
P-0010507-T01-IM5	SOMATIC	NOTCH3		19	16	15291977	76278026	Intron of NOTCH3(-): 4bp before exon 18	IGR: 33Kb before CNTNAP4(+)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement : t(16;19)(q23.1;p13.12)(chr16:g.76278026::chr19:g.15291977)			0	0	0	0	19
P-0022084-T01-IM6	SOMATIC	NOTCH3		19	1	15281223	151973890	Exon 27 of NOTCH3(-)	IGR: 17Kb before NBPF18P(+)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	PRECISE	5to5	NOTCH3 (NM_000435) Rearrangement : t(1;19)(q21.3;p13.12)(chr1:g.151973890::chr19:g.15281223)			0	0	0	0	50
P-0023471-T01-IM6	SOMATIC	NOTCH3		19	3	15271620	87561351	Exon 33 of NOTCH3(-)	IGR: 253Kb before POU1F1(-)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	PRECISE	5to5	NOTCH3 (NM_000435) rearrangement: t(3;19)(p11.2;p13.12)(chr3:g.87561351::chr19:g.15271620)			0	0	0	0	27
P-0043823-T01-IM6	SOMATIC	NOTCH3		19	12	15288174	66426103	Intron of NOTCH3(-):161bp after exon 24	IGR: 9Kb before MIR6074(-)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	PRECISE	5to3	NOTCH3 (NM_000435) rearrangement: t(12;19)(q14.3;p13.12)(chr12:g.66426103::chr19:g.15288174)			0	0	0	0	24
P-0073168-T01-IM7	SOMATIC	NOTCH3		19	12	15291025	58876673	Exon 20 of NOTCH3(-)	IGR: 83Kb before LOC101927653(-)		GRCh37	TRANSLOCATION			NOTCH3-intragenic	PRECISE	5to3	NOTCH3 (NM_000435) rearrangement: t(12;19)(q14.1;p13.12)(chr12:g.58876673::chr19:g.15291025)			0	0	0	0	13
P-0047465-T01-IM6	SOMATIC	NOTCH3	BRD4	19	19	15271499	15393284	Exon 33 of NOTCH3(-)	Promoter of BRD4(-):45Kb from tx start		GRCh37	DELETION	0	5	Protein Fusion: mid-exon  {BRD4:NOTCH3}	IMPPRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.6940:NOTCH3_chr19:g.15393284del	yes	unknown	121785	142566	187810	0	5
P-0036054-T01-IM6	SOMATIC	NOTCH3		19	19	15285085	36346742	Exon 25 of NOTCH3(-)	Promoter of KIRREL2(+):1Kb from tx start		GRCh37	INVERSION			Protein Fusion: mid-exon  {KIRREL2:NOTCH3}	PRECISE	3to3	NOTCH3 (NM_000435) rearrangement: c.4530_chr19:g.36346742inv			21061657	306004	357095	0	10
P-0042121-T01-IM6	SOMATIC	NOTCH3	EPHX3	19	19	15302622	15340794	Exon 5 of NOTCH3(-)	Intron of EPHX3(-):978bp after exon 4		GRCh37	DUPLICATION	0	7	Protein Fusion: mid-exon  {NOTCH3:EPHX3}	IMPPRECISE	5to3	NOTCH3 (NM_000435) - EPHX3 (NM_024794) rearrangement: c.736:NOTCH3_c.616+979:EPHX3dup	yes	unknown	38172	10225	3558	0	7
P-0059904-T01-IM7	SOMATIC	NOTCH3		19	19	11273193	15291853	Promoter of KANK2(-):2Kb from tx start	Exon 18 of NOTCH3(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {NOTCH3:KANK2}	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: c.2913:NOTCH3_chr19:g.11273193del			4018660	76334	99333	0	55
P-0037581-T01-IM6	SOMATIC	NOTCH3	PSMC5	19	17	15272285	61904863	Exon 33 of NOTCH3(-)	Exon 1 of PSMC5(+)		GRCh37	TRANSLOCATION	10	45	Protein Fusion: mid-exon  {NOTCH3:PSMC5}	PRECISE	5to5	NOTCH3 (NM_000435) - PSMC5 (NM_002805) rearrangement: t(17,19)(q23.3;p13.12)(chr17:g.61904863::chr19:g.15272285)	yes	unknown	0	0	0	0	51
P-0001278-T01-IM3	SOMATIC	NOTCH3	EPHX3	19	19	15296415	15340016	Exon 13 of NOTCH3(-)	Intron of EPHX3(-): 1Kb before exon 6		GRCh37	DELETION	39	16	Protein fusion: mid-exon (EPHX3-NOTCH3)	PRECISE	3to5		yes	unknown	43601	26058	23676	0	16
P-0040725-T01-IM6	SOMATIC	NOTCH3	MAPK10	19	4	15298887	87214736	Intron of NOTCH3(-):82bp before exon 10	5-UTR of MAPK10(-):276Kb before coding start		GRCh37	TRANSLOCATION	10	9	Transcript Fusion {MAPK10:NOTCH3}	PRECISE	3to5	NOTCH3 (NM_000435) rearrangement: t(4;19)(q21.3;p13.12)(chr4:g.87214736::chr19:g.15298887)	yes	unknown	0	0	0	0	9
P-0041155-T02-IM7	SOMATIC	NOTCH3	NOTCH3	X	19	40945611	15281895	5-UTR of USP9X(+):37Kb before coding start	Intron of NOTCH3(-):259bp before exon 26		GRCh37	TRANSLOCATION	10	74	Transcript Fusion {USP9X:NOTCH3}	PRECISE	3to3	NOTCH3 (NM_000435) rearrangement: t(19;X)(p13.12;p11.4)(chr19:g.15281895::chrX:g.40945611)	yes	unknown	0	0	0	0	73
P-0049919-T01-IM6	SOMATIC	NOTCH4	BRD2	6	6	32169965	32929127	Exon 21 of NOTCH4(-)	IGR: 7Kb before BRD2(+)		GRCh37	DELETION	10	98	NOTCH4-intragenic	PRECISE	3to5	NOTCH4 (NM_004557) rearrangement: c.3643:NOTCH4_chr6:g.32929127del	yes	unknown	759162	101508	97506	0	107
P-0039751-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	29679276	32188064	IGR: 12Kb before HLA-F(+)	Intron of NOTCH4(-):3bp before exon 7		GRCh37	DELETION	10	35	NOTCH4-intragenic	PRECISE	3to5	NOTCH4 (NM_004557) rearrangement: c.1160-3:NOTCH4_chr6:g.29679276del	yes	unknown	2508788	191535	268165	0	37
P-0071927-T01-IM7	SOMATIC	NOTCH4	LINC02044	6	3	32171920	112853619	Exon 19 of NOTCH4(-)	IGR: 8Kb before LOC101929717(-)		GRCh37	TRANSLOCATION	0	7	NOTCH4-intragenic	IMPPRECISE	5to3	NOTCH4 (NM_004557) rearrangement: t(3;6)(q13.2;p21.32)(chr3:g.112853619::chr6:g.32171920)	yes	unknown	0	0	0	0	7
P-0021501-T01-IM6	SOMATIC	NOTCH4		6	6	32190978	41754978	Intron of NOTCH4(-):115bp before exon 2	3-UTR of PRICKLE4(+):4Kb after coding stop		GRCh37	DELETION			NOTCH4-intragenic	PRECISE	3to5	NOTCH4 (NM_004557) rearrangement: c.74-115:NOTCH4_chr6:g.41754978del			9564000	151304	130704	0	22
P-0047598-T01-IM6	SOMATIC	NOTCH4		6	6	29374997	32183020	IGR: 11Kb before OR12D2(+)	Exon 12 of NOTCH4(-)		GRCh37	INVERSION			NOTCH4-intragenic	PRECISE	5to5	NOTCH4 (NM_004557) rearrangement: c.2004:NOTCH4_chr6:g.29374997inv			2808023	189332	378291	0	20
P-0082901-T01-IM7	SOMATIC	NOTCH4		6	6	32180664	32204907	Exon 16 of NOTCH4(-)	IGR: 42Kb before NOTCH4(-)		GRCh37	DELETION			NOTCH4-intragenic	PRECISE	3to5	NOTCH4 (NM_004557) rearrangement: c.2463:NOTCH4_chr6:g.32204907del			24243	24681	39481	0	9
P-0065723-T01-IM7	SOMATIC	NOTCH4	CSNK2B	6	6	31637100	32190585	Exon 6 of CSNK2B(+)	Intron of NOTCH4(-):2bp before exon 3		GRCh37	INVERSION	10	72	Protein Fusion: mid-exon  {NOTCH4:CSNK2B}	PRECISE	5to5	NOTCH4 (NM_004557) - CSNK2B (NM_001320) rearrangement: c.156-2:NOTCH4_c.372:CSNK2Binv	yes	unknown	553485	69279	119196	0	79
P-0059477-T01-IM7	SOMATIC	NOTCH4	MIPOL1	14	6	37817599	32184824	Intron of MIPOL1(+):21Kb before exon 12	Exon 11 of NOTCH4(-)		GRCh37	TRANSLOCATION	0	12	Protein Fusion: mid-exon  {NOTCH4:MIPOL1}	IMPPRECISE	5to5	NOTCH4 (NM_004557) - MIPOL1 (NM_138731) rearrangement: t(6;14)(p21.32;q21.1)(chr6:g.32184824::chr14:g.37817599)	yes	unknown	0	0	0	0	13
P-0014807-T01-IM6	SOMATIC	NOTCH4	C6orf222	6	6	32181597	36285273	Exon 14 of NOTCH4(-)	Intron of C6orf222(-): 105bp before exon 12		GRCh37	DELETION	34	20	Protein fusion: mid-exon (C6orf222-NOTCH4)	PRECISE	3to5	C6orf222 (NM_001010903) - NOTCH4 (NM_004557) rearrangement: c.1924-105:C6orf222_c.2188:NOTCH4del	yes	unknown	4103676	111003	118874	0	20
P-0004346-T01-IM5	SOMATIC	NOTCH4	C6orf10	6	6	32166486	32262478	Exon 25 of NOTCH4(-)	Intron of C6orf10(-): 665bp before exon 11		GRCh37	DUPLICATION	13	7	Protein fusion: mid-exon (NOTCH4-C6orf10)	PRECISE	5to3	NOTCH4 (NM_004557) - C6orf10 (NM_006781) rearrangement: c.4557:NOTCH4_c.638-666:C6orf10dup	yes	unknown	95992	36870	24028	0	6
P-0018537-T01-IM6	SOMATIC	NOTCH4	PEX6	6	6	32166999	42947466	Intron of NOTCH4(-):77bp before exon 24	Promoter of PEX6(-):16Kb from tx start		GRCh37	DELETION	10	20	Transcript Fusion {PEX6:NOTCH4}	PRECISE	3to5	NOTCH4 (NM_004557) Rearrangement : c.-578:PEX6_c.4316-77:NOTCH4del	yes	unknown	10780467	131677	281152	0	19
P-0083533-T02-IM7	SOMATIC	NPM1		5	5	170817274	170826527	Intron of NPM1(+):140bp after exon 2	Intron of NPM1(+):629bp before exon 7		GRCh37	DELETION			Deletion of 4 exons : out of frame	PRECISE	3to5	NPM1 (NM_002520) rearrangement: c.138+140_c.525-630del			9253	2739	1295	0	8
P-0032067-T01-IM6	SOMATIC	NPM1	NPM1	5	5	170817910	170827217	Intron of NPM1(+):398bp before exon 3	Intron of NPM1(+):3bp after exon 7		GRCh37	DELETION	10	4	Deletion of 5 exons : in frame	PRECISE	3to5	NPM1 (NM_002520) rearrangement: c.139-399_c.582+3del	yes	unknown	9307	4300	6634	0	4
P-0017509-T01-IM6	SOMATIC	NPM1		5	5	64521538	170827138	Intron of ADAMTS6(-):374bp after exon 16	Intron of NPM1(+):18bp before exon 7		GRCh37	DELETION			NPM1-intragenic	IMPPRECISE	3to5	NPM1(NM_002520) rearrangement: chr5:g.64521538_c.525-19:NPM1del			106305600	264498	611919	0	6
P-0009450-T02-IM6	SOMATIC	NPRL3	AXIN1	16	16	146617	359938	Intron of NPRL3(-):2Kb after exon 6	Intron of AXIN1(-):34bp after exon 4		GRCh37	DELETION	10	52	Protein Fusion: in frame  {AXIN1:NPRL3}	PRECISE	3to5	AXIN1 (NM_003502) - NPRL3 (NM_001077350) Rearrangement : c.1116+35:AXIN1_c.924+1526:NPRL3del	yes	unknown	213321	19708	18596	0	57
P-0084156-T01-IM7	SOMATIC	NRAS	TRIM33	1	1	115021380	115256424	Intron of TRIM33(-):14Kb before exon 2	Exon 3 of NRAS(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {NRAS:TRIM33}	IMPPRECISE	3to5	NRAS (NM_002524) - TRIM33 (NM_015906) rearrangement: c.287:NRAS_c.527-14370:TRIM33del			235044	6759	10288	0	7
P-0046969-T01-IM6	SOMATIC	NRAS	NRAS	19	1	49258664	115256393	Promoter of FGF21(+):679bp from tx start	Intron of NRAS(-):27bp after exon 3		GRCh37	TRANSLOCATION	0	5	Transcript Fusion {NRAS:FGF21}	IMPPRECISE	5to5	NRAS (NM_002524) rearrangement: t(1;19)(p13.2;q13.33)(chr1:g.115256393::chr19:g.49258664)	yes	unknown	0	0	0	0	6
P-0049515-T01-IM6	SOMATIC	NRF1	BRAF								GRCh37				NRF1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NRF1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes NRF1 Exon10 (NM_005011) and BRAF Exon10 (NM_004333). PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0004752-T01-IM5	SOMATIC	NRG1	CD74	8	5	32549502	149782966	Intron of NRG1(+): 36Kb before exon 3	Intron of CD74(-): 91bp before exon 7		GRCh37	TRANSLOCATION	16	14	Protein fusion: in frame (CD74-NRG1)	PRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement  : t(5;8)(5q32;8p12)(chr8:g.32549502::chr5:g.149782966)	yes	unknown	0	0	0	0	14
P-0011180-T01-IM5	SOMATIC	NRG1	CD74	8	5	32513214	149782758	Intron of NRG1(+): 7Kb after exon 1	Exon 7 of CD74(-)		GRCh37	TRANSLOCATION	0	8	Protein fusion: mid-exon (CD74-NRG1)	IMPRECISE	5to5	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149782758::chr8:g.32513214)	yes	unknown	0	0	0	0	7
P-0008795-T01-IM5	SOMATIC	NRG1	FOXA1	14	8	38061417	32309025	Exon 2 of FOXA1(-)	Intron of NRG1(+): 144Kb before exon 2		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (NRG1-FOXA1)	PRECISE	3to3	NRG1 (NM_013962) - FOXA1 (NM_004496) rearrangement : t(8;14)(p12;q21.1)(chr8:g.32309025::chr14:g.38061417)			0	0	0	0	55
P-0047257-T01-IM6	SOMATIC	NRG1	NOTCH2	8	1	32443239	120465633	Intron of NRG1(+):10Kb before exon 2	Intron of NOTCH2(-):232bp before exon 27		GRCh37	TRANSLOCATION	9	7	Protein Fusion: out of frame  {NRG1:NOTCH2}	PRECISE	3to3	NRG1 (NM_013956) - NOTCH2 (NM_024408) rearrangement: t(1;8)(p12;p12)(chr1:g.120465633::chr8:g.32443239)	yes	unknown	0	0	0	0	5
P-0036885-T01-IM6	SOMATIC	NRG3	NOTCH4	10	6	84452811	32163675	Intron of NRG3(+):46Kb before exon 4	Exon 30 of NOTCH4(-)		GRCh37	TRANSLOCATION	0	45	Protein Fusion: mid-exon  {NRG3:NOTCH4}	IMPPRECISE	3to3	NRG3 (NM_001010848) - NOTCH4 (NM_004557) rearrangement: t(6;10)(p21.32;q23.1)(chr6:g.32163675::chr10:g.84452811)	yes	unknown	0	0	0	0	43
P-0022337-T01-IM6	SOMATIC	NRG3	FGFR2	10	10	84208501	123241723	Intron of NRG3(+):90Kb after exon 3	Intron of FGFR2(-):1Kb after exon 17		GRCh37	INVERSION			Protein Fusion: out of frame  {NRG3:FGFR2}	PRECISE	3to3	NRG3 (NM_001010848) - FGFR2 (NM_000141) Rearrangement : c.953+89877:NRG3_c.2301+1489:FGFR2inv			39033222	170853	125154	0	39
P-0049071-T01-IM6	SOMATIC	NRG3	FGFR2	10	10	83744891	123244882	Intron of NRG3(+):107Kb after exon 1	Intron of FGFR2(-):26bp after exon 16		GRCh37	INVERSION			Protein Fusion: out of frame  {NRG3:FGFR2}	IMPPRECISE	3to3	NRG3 (NM_001010848) - FGFR2 (NM_000141) rearrangement: c.823+108972:NRG3_c.2195+27:FGFR2inv			39499991	148365	110761	0	11
P-0046974-T01-IM6	SOMATIC	NSD1	MXD3	5	5	176721402	176740468	Exon 23 of NSD1(+)	Promoter of MXD3(-):6Kb from tx start		GRCh37	DELETION	10	21	Antisense Fusion	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.7033:NSD1_chr5:g.176740468del	yes	unknown	19066	5663	6078	0	26
P-0057103-T01-IM6	SOMATIC	NSD1	LMAN2	5	5	176721871	176770618	Exon 23 of NSD1(+)	Intron of LMAN2(-):5Kb before exon 3		GRCh37	DELETION	10	18	Antisense Fusion	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.7502:NSD1_chr5:g.176770618del	yes	unknown	48747	3857	2763	0	20
P-0068214-T01-IM7	SOMATIC	NSD1	FAM193B	5	5	176562630	176963275	Exon 2 of NSD1(+)	Intron of FAM193B(-):83bp after exon 4		GRCh37	DELETION	10	25	Antisense Fusion	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.526:NSD1_chr5:g.176963275del	yes	unknown	400645	48981	66187	0	26
P-0070512-T03-IM7	SOMATIC	NSD1	NSD1	5	5	176675161	176680513	Intron of NSD1(+):20bp before exon 11	Intron of NSD1(+):2Kb after exon 12		GRCh37	DELETION	10	15	Deletion of 2 exons : out of frame	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.4498-21_c.4765+1659del	yes	unknown	5352	2001	1128	0	18
P-0040741-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176561059	176562307	5-UTR of NSD1(+):1Kb before coding start	Exon 2 of NSD1(+)		GRCh37	DELETION	9	8	Deletion within transcript : mid-exon	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.203:NSD1_chr5:g.176561059del	yes	unknown	1248	1436	1869	0	8
P-0039706-T01-IM6	SOMATIC	NSD1		5	5	176631218	176632947	Exon 4 of NSD1(+)	Intron of NSD1(+):2Kb after exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.1161_c.1236+1654del			1729	521	550	0	116
P-0075870-T01-IM7	SOMATIC	NSD1	NSD1	5	5	176689503	176697008	Intron of NSD1(+):2Kb after exon 14	Intron of NSD1(+):200bp after exon 16		GRCh37	DUPLICATION	9	6	Duplication of 2 exons : in frame	PRECISE	5to3	NSD1 (NM_022455) rearrangement: c.5146+2334_c.5509+200dup	yes	unknown	7505	3469	5011	0	5
P-0060531-T01-IM7	SOMATIC	NSD1		5	5	176678718	176684402	Intron of NSD1(+):12bp before exon 12	Intron of NSD1(+):250bp after exon 13		GRCh37	DUPLICATION			Duplication of 2 exons : out of frame	PRECISE	5to3	NSD1 (NM_022455) rearrangement: c.4642-13_c.4966+250dup			5684	3027	5987	0	14
P-0019222-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176665207	176688372	Intron of NSD1(+):30bp before exon 7	Intron of NSD1(+):1Kb after exon 14		GRCh37	DUPLICATION	10	12	Duplication of 8 exons : out of frame	PRECISE	5to3	NSD1 (NM_022455) rearrangement: c.3922-31_c.5146+1203dup	yes	unknown	23165	12234	13040	0	12
P-0050488-T01-IM6	SOMATIC	NSD1	EMBP1	5	1	176678821	121484679	Exon 12 of NSD1(+)	IGR: 224Kb before EMBP1(+)		GRCh37	TRANSLOCATION	10	13	NSD1-intragenic	PRECISE	3to5	NSD1 (NM_022455) rearrangement: t(1;5)(p11.2;q35.3)(chr1:g.121484679::chr5:g.176678821)	yes	unknown	0	0	0	0	13
P-0076180-T01-IM7	SOMATIC	NSD1	NSD1	5	5	90466983	176707641	IGR: 132Kb before LUCAT1(-)	Exon 18 of NSD1(+)		GRCh37	INVERSION	10	6	NSD1-intragenic	PRECISE	3to3	NSD1 (NM_022455) rearrangement: c.5698:NSD1_chr5:g.90466983inv	yes	unknown	86240658	709298	784201	0	6
P-0024487-T01-IM6	SOMATIC	NSD1		5	5	8599249	176715992	IGR: 138Kb before MIR4458(+)	Intron of NSD1(+):66bp after exon 21		GRCh37	INVERSION			NSD1-intragenic	PRECISE	3to3	NSD1 (NM_022455) rearrangement: chr5:g.8599249_c.6258+66:NSD1inv			168116743	732271	1220887	0	116
P-0024689-T01-IM6	SOMATIC	NSD1		5	5	106346069	176719124	3-UTR of LOC102467213(-):646bp after coding stop	Exon 22 of NSD1(+)		GRCh37	INVERSION			NSD1-intragenic	PRECISE	3to3	NSD1 (NM_022455) rearrangement: c.6428:NSD1_chr5:g.106346069inv			70373055	367385	534864	0	90
P-0059570-T01-IM7	SOMATIC	NSD1		5	1	176638689	178964504	Exon 5 of NSD1(+)	IGR: 31Kb before FAM20B(+)		GRCh37	TRANSLOCATION			NSD1-intragenic	PRECISE	5to5	NSD1 (NM_022455) rearrangement: t(1;5)(q25.2;q35.3)(chr1:g.178964504::chr5:g.176638689)			0	0	0	2	38
P-0045893-T01-IM6	SOMATIC	NSD1	NRF1	7	5	129392537	176636731	Intron of NRF1(+):2Kb before exon 11	Exon 5 of NSD1(+)		GRCh37	TRANSLOCATION	0	16	Protein Fusion: mid-exon  {NSD1:NRF1}	IMPPRECISE	5to3	NSD1 (NM_022455) - NRF1 (NM_005011) rearrangement: t(5;7)(q35.3;q32.2)(chr5:g.176636731::chr7:g.129392537)	yes	unknown	0	0	0	0	16
P-0073410-T01-IM7	SOMATIC	NSD1	PPAP2A	5	5	54804323	176636955	Intron of PPAP2A(-):26Kb after exon 1	Exon 5 of NSD1(+)		GRCh37	INVERSION	10	78	Protein Fusion: mid-exon  {NSD1:PPAP2A}	PRECISE	3to3	NSD1 (NM_022455) - PPAP2A (NM_176895) rearrangement: c.1555:NSD1_c.59-17381:PPAP2Ainv	yes	unknown	121832632	615929	879062	0	78
P-0046342-T01-IM6	SOMATIC	NSD1	NSD1	5	5	175874680	176618798	Promoter of FAF2(+):675bp from tx start	Intron of NSD1(+):86bp before exon 3		GRCh37	DELETION	10	34	Transcript Fusion {FAF2:NSD1}	PRECISE	3to5	NSD1 (NM_022455) rearrangement: c.928-87:NSD1_chr5:g.175874680del	yes	unknown	744118	34762	26914	0	36
P-0065456-T01-IM7	SOMATIC	NSD3	NUTM1								GRCh37				NSD3-NUTM1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: NSD3-NUTM1 fusion. Note: The rearrangement is an in-frame fusion between genes NSD3 Exon7 (NM_017778) and NUTM1 Exon3 (NM_175741).	yes	unknown					
P-0045926-T01-IM6	SOMATIC	NSRP1	BRCA1	17	17	28451557	41243237	Intron of NSRP1(+):6Kb after exon 2	Intron of BRCA1(-):188bp before exon 11		GRCh37	INVERSION	10	4	Protein Fusion: out of frame  {NSRP1:BRCA1}	PRECISE	3to3	NSRP1 (NM_032141) - BRCA1 (NM_007294) rearrangement: c.114+6366:NSRP1_c.4097-188:BRCA1inv	yes	unknown	12791680	311546	391404	0	3
P-0057378-T02-IM6	SOMATIC	NT5DC2	BAP1	3	3	52439483	52565730	Intron of BAP1(-):173bp before exon 11	Intron of NT5DC2(-):2Kb before exon 2		GRCh37	DELETION	10	13	Protein Fusion: in frame  {NT5DC2:BAP1}	PRECISE	3to5	NT5DC2 (NM_001134231) - BAP1 (NM_004656) rearrangement: c.232+1792:NT5DC2_c.932-173:BAP1del	yes	unknown	126247	21068	5663	0	15
P-0024450-T01-IM6	SOMATIC	NTHL1		19	16	10213963	2090167	Promoter of PPAN-P2RY11(+):3Kb from tx start	Exon 5 of NTHL1(-)		GRCh37	TRANSLOCATION			NTHL1-intragenic	PRECISE	5to3	NTHL1 (NM_002528) rearrangement: t(16;19)(p13.3;p13.2)(chr16:g.2090167::chr19:g.10213963)			0	0	0	0	22
P-0032607-T01-IM6	SOMATIC	NTHL1		16	16	2056154	2090241	Intron of ZNF598(-):2Kb before exon 4	Intron of NTHL1(-):2bp before exon 5		GRCh37	INVERSION			NTHL1-intragenic	IMPPRECISE	3to3	NTHL1 (NM_002528) rearrangement: c.710-2:NTHL1_chr16:g.2056154inv			34087	3157	1198	0	18
P-0018278-T01-IM6	SOMATIC	NTHL1	ABCA3	16	16	2089995	2357769	Exon 6 of NTHL1(-)	Intron of ABCA3(-):681bp after exon 11		GRCh37	DUPLICATION	10	11	Protein Fusion: mid-exon  {NTHL1:ABCA3}	PRECISE	5to3	NTHL1 (NM_002528) - ABCA3 (NM_001089) Rearrangement : c.869:NTHL1_c.1285+682:ABCA3dup	yes	unknown	267774	80836	234648	0	26
P-0045434-T01-IM6	SOMATIC	NTHL1	TSC2	16	16	2090099	2132119	Intron of NTHL1(-):34bp after exon 5	Intron of TSC2(+):317bp before exon 32		GRCh37	DELETION	10	41	TSC2-NTHL1 fusion	PRECISE	3to5	NTHL1 (NM_002528) - TSC2 (NM_000548) rearrangement: c.815+35:NTHL1_c.3815-318:TSC2del	yes	unknown	42020	91983	132610	0	41
P-0048892-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156841192	156841976	Intron of NTRK1(+):222bp before exon 7	Intron of NTRK1(+):429bp after exon 7		GRCh37	INVERSION	10	40	Antisense Fusion	PRECISE	3to3	NTRK1 (NM_002529) rearrangement: c.718-223_c.850+429inv	yes	unknown	784	4192	6080	0	39
P-0007050-T01-IM5	SOMATIC	NTRK1		1	1	156804802	156845113	Intron of NTRK1(+): 7Kb before exon 2	Intron of NTRK1(+): 199bp before exon 12		GRCh37	INVERSION			Antisense fusion	PRECISE	3to3	NTRK1(NM_002529) rearrangement : c.10-7071_c.1355-199inv			40311	36334	29765	0	75
P-0022117-T01-IM6	SOMATIC	NTRK1		1	1	156838406	203839162	Exon 6 of NTRK1(+)	3-UTR of SNRPE(+):8Kb after coding stop		GRCh37	INVERSION			NTRK1-intragenic	PRECISE	5to5	NTRK1 (NM_002529) rearrangement: c.684_chr1:g.203839162inv			47000756	199054	130033	0	22
P-0024600-T01-IM6	SOMATIC	NTRK1		1	1	156836316	160259587	Intron of NTRK1(+):385bp before exon 4	3-UTR of COPA(-):359bp after coding stop		GRCh37	DELETION			NTRK1-intragenic	PRECISE	3to5	NTRK1 (NM_002529) rearrangement: c.360-386:NTRK1_chr1:g.160259587del			3423271	50417	24325	0	19
P-0041484-T01-IM6	SOMATIC	NTRK1		1	1	156627355	156843683	Intron of BCAN(+):111bp before exon 11	Exon 8 of NTRK1(+)		GRCh37	INVERSION			NTRK1-intragenic	PRECISE	5to5	NTRK1 (NM_002529) rearrangement: c.1109:NTRK1_chr1:g.156627355inv			216328	38885	70442	0	134
P-0046560-T01-IM6	SOMATIC	NTRK1		1	1	156109664	156845149	3-UTR of LMNA(+):25Kb after coding stop	Intron of NTRK1(+):162bp before exon 12		GRCh37	DELETION			NTRK1-intragenic	PRECISE	3to5	NTRK1 (NM_002529) rearrangement: c.1355-163:NTRK1_chr1:g.156109664del			735485	63996	60759	0	134
P-0055952-T01-IM6	SOMATIC	NTRK1		1	1	156841915	156851445	Intron of NTRK1(+):368bp after exon 7	3-UTR of NTRK1(+):21Kb after coding stop		GRCh37	DUPLICATION			NTRK1-intragenic	PRECISE	5to3	NTRK1 (NM_002529) rearrangement: c.850+368:NTRK1_chr1:g.156851445dup			9530	41359	52312	0	26
P-0070907-T01-IM7	SOMATIC	NTRK1		1	1	156632623	156838201	IGR: 6Kb before NES(-)	Intron of NTRK1(+):95bp before exon 6		GRCh37	DELETION			NTRK1-intragenic	PRECISE	3to5	NTRK1 (NM_002529) rearrangement: c.575-96:NTRK1_chr1:g.156632623del			205578	25373	27091	0	49
P-0043170-T01-IM6	SOMATIC	NTRK1									GRCh37				NTRK1-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:   NTRK1 (NM_002529)  exons 3-9 deletion. PMID: 26581861, 29914559  Note1: the functional significance of this event is unknown. Trk inhibitors have not been investigated in this setting.  Note2: This event was detected with low read support.	yes	unknown					
P-0037146-T01-IM6	SOMATIC	NTRK1									GRCh37				NTRK1-intragenic - Archer			POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: NTRK1 (NM_002529) deletion of exons 3-9. PMID: 26581861, 29914559	yes	unknown					
P-0054381-T02-IM7	SOMATIC	NTRK1		1	1	154137975	156845184	Intron of TPM3(-):5Kb after exon 6	Intron of NTRK1(+):127bp before exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {NTRK1:TPM3}	PRECISE	3to3	NTRK1 (NM_002529) rearrangement: c.1355-128:NTRK1_chr1:g.154137975inv			2707209	91548	91753	0	43
P-0010628-T03-IM6	SOMATIC	NTRK1	IRF2BP2	1	1	156844223	234744291	Intron of NTRK1(+):31bp after exon 9	Exon 1 of IRF2BP2(-)		GRCh37	INVERSION	10	56	Protein Fusion: mid-exon  {IRF2BP2:NTRK1}	PRECISE	5to5	IRF2BP2 (NM_001077397) - NTRK1 (NM_002529) rearrangement: c.950:IRF2BP2_c.1195+31:NTRK1inv	yes	unknown	77900068	320259	346859	0	68
P-0040988-T01-IM6	SOMATIC	NTRK1		1	1	156849891	156861509	Exon 16 of NTRK1(+)	Promoter of PEAR1(+):2Kb from tx start		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {PEAR1:NTRK1}	PRECISE	5to3	NTRK1 (NM_002529) rearrangement: c.2147:NTRK1_chr1:g.156861509dup			11618	4453	3928	0	7
P-0038819-T01-IM6	SOMATIC	NTRK1	RAB25	1	1	156032830	156844458	Intron of RAB25(+):2Kb after exon 1	Intron of NTRK1(+):40bp after exon 10		GRCh37	DUPLICATION			Protein Fusion: out of frame  {NTRK1:RAB25}	PRECISE	5to3	NTRK1 (NM_002529) - RAB25 (NM_020387) Rearrangement :			811628	49938	81662	0	94
P-0038568-T01-IM6	SOMATIC	NTRK1	SEMA4A	1	1	156127591	156841963	Intron of SEMA4A(+):269bp before exon 4	Intron of NTRK1(+):416bp after exon 7		GRCh37	DUPLICATION	10	18	Protein Fusion: out of frame  {NTRK1:SEMA4A}	PRECISE	5to3	NTRK1 (NM_002529) - SEMA4A (NM_001193300) rearrangement: c.850+416:NTRK1_c.301-270:SEMA4Adup	yes	unknown	714372	40455	35240	0	18
P-0075328-T01-IM7	SOMATIC	NTRK1	NTRK1	1	1	147225928	156836272	Promoter of GJA5(-):2Kb from tx start	Intron of NTRK1(+):429bp before exon 4		GRCh37	INVERSION	10	88	Transcript Fusion {GJA5:NTRK1}	PRECISE	5to5	NTRK1 (NM_002529) rearrangement: c.360-430:NTRK1_chr1:g.147225928inv	yes	unknown	9610344	104805	255999	0	136
P-0065876-T01-IM7	SOMATIC	NTRK2	NTRK2	13	9	57097734	87479089	IGR: 617Kb before PRR20D(+)	Intron of NTRK2(+):3Kb before exon 16		GRCh37	TRANSLOCATION	10	11	NTRK2-intragenic	PRECISE	5to5	NTRK2 (NM_006180) rearrangement: t(9;13)(q21.33;q21.1)(chr9:g.87479089::chr13:g.57097734)	yes	unknown	0	0	0	0	12
P-0018195-T01-IM6	SOMATIC	NTRK2		14	9	90393239	87317072	Intron of EFCAB11(-):5Kb after exon 5	Intron of NTRK2(+):1bp before exon 5		GRCh37	TRANSLOCATION			NTRK2-intragenic	PRECISE	3to5	NTRK2 (NM_006180) rearrangement: t(9;14)(q21.33;q32.11)(chr9:g.87317072::chr14:g.90393239)			0	0	0	0	22
P-0029839-T01-IM6	SOMATIC	NTRK2		9	9	87476855	87685163	Intron of NTRK2(+):853bp after exon 15	IGR: 400Kb before NTRK2(+)		GRCh37	INVERSION			NTRK2-intragenic	PRECISE	5to5	NTRK2 (NM_006180) Rearrangement: c.1444+853_g.87685163inv			208308	43550	54875	0	26
P-0047755-T01-IM6	SOMATIC	NTRK2		9	9	87549308	132645227	Intron of NTRK2(+):101bp after exon 17	Promoter of USP20(+):48Kb from tx start		GRCh37	DELETION			Transcript Fusion {NTRK2:USP20}	PRECISE	3to5	NTRK2 (NM_006180) rearrangement: c.1764+101:NTRK2_chr9:g.132645227del			45095919	176615	160456	0	16
P-0038349-T01-IM6	SOMATIC	NTRK3	VPS39	15	15	42466820	88483908	Intron of VPS39(-):770bp before exon 12	Exon 15 of NTRK3(-)		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	NTRK3 (NM_001012338) - VPS39 (NM_015289) rearrangement: c.1662:NTRK3_c.961-770:VPS39inv			46017088	182850	135266	0	29
P-0048889-T01-IM6	SOMATIC	NTRK3		15	15	88420297	90427016	Exon 20 of NTRK3(-)	Intron of C15orf38-AP3S2(-):5Kb after exon 7		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	NTRK3 (NM_001012338) rearrangement: c.2389:NTRK3_chr15:g.90427016inv			2006719	28222	46804	0	18
P-0017711-T01-IM6	SOMATIC	NTRK3		X	15	62147342	88678407	IGR: 420Kb before SPIN4(-)	Exon 10 of NTRK3(-)		GRCh37	TRANSLOCATION			NTRK3-intragenic	PRECISE	3to3	NTRK3 (NM_001012338) rearrangement: t(X;15)(q11.1;q25.3)(chrX:g.62147342::chr15:g.88678407)			0	0	0	0	23
P-0032014-T01-IM6	SOMATIC	NTRK3		15	15	88406573	88669429	IGR: 13Kb before NTRK3(-)	Intron of NTRK3(-):72bp after exon 13		GRCh37	DELETION			NTRK3-intragenic	PRECISE	3to5	NTRK3 (NM_001012338) rearrangement: c.1396+73:NTRK3_chr15:g.88406573del			262856	17688	20558	0	38
P-0037044-T01-IM6	SOMATIC	NTRK3		15	3	88476548	192212899	Intron of NTRK3(-):133bp before exon 16	Intron of FGF12(-):135Kb before exon 3		GRCh37	TRANSLOCATION			NTRK3-intragenic	PRECISE	3to3	NTRK3 (NM_001012338) rearrangement: t(3;15)(q28;q25.3)(chr3:g.192212899::chr15:g.88476548)			0	0	0	0	42
P-0015196-T01-IM6	SOMATIC	NTRK3		15	2	88423420	4144089	Intron of NTRK3(-): 81bp after exon 17	IGR: 438Kb before ALLC(+)		GRCh37	TRANSLOCATION			NTRK3-intragenic	PRECISE	5to5	NTRK3 (NM_001012338) rearrangement: t(2;15)(p25.3;q25.3)(chr2:g.4144089::chr15:g.88423420)			0	0	0	0	19
P-0004737-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88632786	12006809	Intron of NTRK3(-): 37Kb after exon 12	Intron of ETV6(+): 314bp after exon 4		GRCh37	TRANSLOCATION	28	72	Protein fusion: in frame (ETV6-NTRK3)	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) Fusion (ETV6 exons 1 to 4 fused to NTRK3 exons 13 to 20) : t(12;15)(p13.2;q25.3)(chr12:g.12006809::chr15:g.88632786)	yes	unknown	0	0	0	0	71
P-0013196-T02-IM6	SOMATIC	NTRK3	ETV6	15	12	88501357	12036072	Intron of NTRK3(-): 17Kb before exon 14	Intron of ETV6(+): 1Kb before exon 6		GRCh37	TRANSLOCATION	39	102	Protein fusion: in frame (ETV6-NTRK3)	PRECISE	3to3	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exon5 fused to NTRK3 exon15): t(12;15)(p13.2;q25.3)(chr12:g.12036072::chr15:g.88501357)	yes	unknown	0	0	0	0	140
P-0002671-T01-IM3	SOMATIC	NTRK3	ETV6	15	12	88505784	12035813	Intron of NTRK3(-): 22Kb before exon 14	Intron of ETV6(+): 2Kb before exon 6		GRCh37	TRANSLOCATION	20	13	Protein fusion: in frame (ETV6-NTRK3)	PRECISE	3to3		yes	unknown	0	0	0	0	17
P-0058230-T02-IM7	SOMATIC	NTRK3	DOT1L	19	15	2227604	88683244	Intron of DOT1L(+):478bp after exon 27	Intron of NTRK3(-):2Kb before exon 7		GRCh37	TRANSLOCATION	10	7	Protein Fusion: out of frame  {NTRK3:DOT1L}	PRECISE	5to5	NTRK3 (NM_001012338) - DOT1L (NM_032482) rearrangement: t(15;19)(q25.3;p13.3)(chr15:g.88683244::chr19:g.2227604)	yes	unknown	0	0	0	0	7
P-0056181-T01-IM7	SOMATIC	NUF2		1	1	163295926	182101180	Exon 2 of NUF2(+)	IGR: 72Kb before LINC01344(-)		GRCh37	INVERSION			NUF2-intragenic	IMPPRECISE	5to5	NUF2 (NM_031423) rearrangement: c.85:NUF2_chr1:g.182101180inv			18805254	74878	150114	0	5
P-0047338-T01-IM6	SOMATIC	NUF2	NUF2	1	1	163266615	163306271	5-UTR of RGS5(-):149Kb before coding start	Intron of NUF2(+):269bp before exon 6		GRCh37	INVERSION	10	13	Transcript Fusion {RGS5:NUF2}	PRECISE	5to5	NUF2 (NM_031423) rearrangement: c.338-270:NUF2_chr1:g.163266615inv	yes	unknown	39656	5012	15906	0	13
P-0036028-T01-IM6	SOMATIC	NUMA1	EGFR	11	7	71728415	55241128	Intron of NUMA1(-):317bp after exon 13	Intron of EGFR(+):311bp after exon 17		GRCh37	TRANSLOCATION	10	65	Protein Fusion: in frame  {NUMA1:EGFR}	PRECISE	5to5	NUMA1 (NM_006185) - EGFR (NM_005228) rearrangement: t(7;11)(p11.2;q13.4)(chr7:g.55241128::chr11:g.71728415)	yes	unknown	0	0	0	0	82
P-0070333-T01-IM7	SOMATIC	NUP107	MDM2	12	12	69083075	69233592	Intron of NUP107(+):237bp before exon 3	Exon 11 of MDM2(+)		GRCh37	DELETION	10	42	Protein Fusion: mid-exon  {NUP107:MDM2}	PRECISE	3to5	NUP107 (NM_020401) - MDM2 (NM_002392) rearrangement: c.101-238:NUP107_c.1457:MDM2del	yes	unknown	150517	13601	34416	0	45
P-0030990-T03-IM6	SOMATIC	NUP93	PRIM2	16	6	56864649	57189490	Intron of NUP93(+):52bp after exon 10	Intron of PRIM2(+):412bp after exon 4		GRCh37	TRANSLOCATION	10	11	Antisense Fusion	PRECISE	3to3	NUP93 (NM_014669) Rearrangement : t(6;16)(p11.1;q13)(chr6:g.57189490::chr16:g.56864649)	yes	unknown	0	0	0	0	11
P-0070191-T01-IM7	SOMATIC	NUP93	NFAT5	16	16	56852823	69724311	Intron of NUP93(+):173bp after exon 6	Intron of NFAT5(+):531bp before exon 11		GRCh37	INVERSION	10	38	Antisense Fusion	PRECISE	3to3	NUP93 (NM_014669) rearrangement: c.564+173:NUP93_chr16:g.69724311inv	yes	unknown	12871488	132739	226364	0	38
P-0051780-T01-IM6	SOMATIC	NUP93	NUP93	16	16	56852515	56855248	Intron of NUP93(+):60bp before exon 6	Intron of NUP93(+):167bp before exon 7		GRCh37	DELETION	10	7	Deletion of 1 exon : in frame	PRECISE	3to5	NUP93 (NM_014669) rearrangement: c.490-61_c.565-168del	yes	unknown	2733	863	1018	0	8
P-0084433-T01-IM7	SOMATIC	NUP93		16	16	56850416	56855298	Intron of NUP93(+):2Kb before exon 6	Intron of NUP93(+):117bp before exon 7		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	NUP93 (NM_014669) rearrangement: c.490-2160_c.565-118del			4882	1209	1864	0	10
P-0054554-T01-IM6	SOMATIC	NUP93	LINC00371	16	13	56865735	51689720	Intron of NUP93(+):18bp before exon 11	3-UTR of LINC00371(-):57Kb after coding stop		GRCh37	TRANSLOCATION	10	28	NUP93-intragenic	PRECISE	5to3	NUP93 (NM_014669) rearrangement: t(13;16)(q14.3;q13)(chr13:g.51689720::chr16:g.56865735)	yes	unknown	0	0	0	0	27
P-0057852-T02-IM7	SOMATIC	NUP93	NUP93	17	16	81076421	56875766	IGR: 39Kb before METRNL(+)	Intron of NUP93(+):21bp after exon 21		GRCh37	TRANSLOCATION	10	8	NUP93-intragenic	PRECISE	3to5	NUP93 (NM_014669) rearrangement: t(16;17)(q13;q25.3)(chr16:g.56875766::chr17:g.81076421)	yes	unknown	0	0	0	0	8
P-0074777-T01-IM7	SOMATIC	NUP93	DOCK4	16	7	56866343	111594556	Intron of NUP93(+):43bp after exon 12	Intron of DOCK4(-):9Kb before exon 9		GRCh37	TRANSLOCATION	10	13	Protein Fusion: out of frame  {NUP93:DOCK4}	PRECISE	3to3	NUP93 (NM_014669) - DOCK4 (NM_014705) rearrangement: t(7;16)(q31.1;q13)(chr7:g.111594556::chr16:g.56866343)	yes	unknown	0	0	0	0	14
P-0014690-T01-IM6	SOMATIC	NUP93	SLC12A3	16	16	56866348	56898209	Intron of NUP93(+): 48bp after exon 12	Promoter of SLC12A3(+): 910bp from tx start		GRCh37	DELETION	10	12	Transcript fusion (NUP93-SLC12A3)	PRECISE	3to5	NUP93 (NM_014669) rearrangement: c.1345+48:NUP93_chr16:g.56898209del	yes	unknown	31861	14256	14726	0	12
P-0041452-T01-IM7	SOMATIC	ODF3L2	JAK3	19	19	469256	17955080	Intron of ODF3L2(-):1Kb before exon 3	Exon 2 of JAK3(-)		GRCh37	DUPLICATION	10	5	Protein Fusion: mid-exon  {ODF3L2:JAK3}	PRECISE	5to3	ODF3L2 (NM_182577) - JAK3 (NM_000215) rearrangement: c.236-1494:ODF3L2_c.147:JAK3dup	yes	unknown	17485824	895547	397900	0	5
P-0016836-T01-IM6	SOMATIC	ODF3L2	BRD4	19	19	475610	15364474	Promoter of ODF3L2(-):12Kb from tx start	Intron of BRD4(-):488bp after exon 11		GRCh37	DUPLICATION	10	22	Transcript Fusion {ODF3L2:BRD4}	PRECISE	5to3	ODF3L2 (NM_182577) - BRD4 (NM_058243) rearrangement: c.-863:ODF3L2_c.2158+489:BRD4dup	yes	unknown	14888864	436156	502916	0	24
P-0030001-T01-IM6	SOMATIC	ORAOV1	FGF19	11	11	69483088	69515809	Intron of ORAOV1(-):308bp before exon 4	Intron of FGF19(-):1Kb before exon 3		GRCh37	DELETION	10	33	Protein Fusion: out of frame  {FGF19:ORAOV1}	PRECISE	3to5	FGF19 (NM_005117) - ORAOV1 (NM_153451) rearrangement: c.337-1465:FGF19_c.228-308:ORAOV1del	yes	unknown	32721	4898	11339	0	34
P-0075569-T01-IM7	SOMATIC	OSBPL2	CCND1	20	11	60866109	69462627	Intron of OSBPL2(+):649bp before exon 13	Intron of CCND1(+):134bp before exon 4		GRCh37	TRANSLOCATION	10	10	Protein Fusion: in frame  {OSBPL2:CCND1}	PRECISE	3to5	OSBPL2 (NM_144498) - CCND1 (NM_053056) rearrangement: t(11;20)(q13.3;q13.33)(chr11:g.69462627::chr20:g.60866109)	yes	unknown	0	0	0	0	10
P-0044218-T01-IM6	SOMATIC	OSBPL2	TMPRSS2	21	20	42872237	60866051	Intron of TMPRSS2(-):2Kb before exon 2	Intron of OSBPL2(+):707bp before exon 13		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {OSBPL2:TMPRSS2}	PRECISE	3to3	OSBPL2 (NM_144498) - TMPRSS2 (NM_001135099) rearrangement: t(20;21)(q13.33;q22.3)(chr20:g.60866051::chr21:g.42872237)	yes	unknown	0	0	0	0	15
P-0059002-T01-IM7	SOMATIC	OSBPL7	BRAF								GRCh37				OSBPL7-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: OSBPL7-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes OSBPL7 Exon16 (NM_145798) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0059002-T01-IM7	SOMATIC	OSBPL7	BRAF	17	7	45890381	140491530	Intron of OSBPL7(-):250bp after exon 16	Intron of BRAF(-):3Kb after exon 8		GRCh37	TRANSLOCATION	10	53	Protein Fusion: in frame  {OSBPL7:BRAF}	PRECISE	5to3	OSBPL7 (NM_145798) - BRAF (NM_004333) fusion: t(7;17)(q34;q21.32)(chr7:g.140491530::chr17:g.45890381)	yes	unknown	0	0	0	0	56
P-0017325-T01-IM6	SOMATIC	OSGIN2	NBN	8	8	90932931	90976557	Intron of OSGIN2(+):376bp before exon 5	Intron of NBN(-):80bp after exon 8		GRCh37	DELETION	10	19	Antisense Fusion	PRECISE	3to5	NBN (NM_002485) rearrangement: g.90932931_c.994+81:NBNdel	yes	unknown	43626	7856	19863	0	19
P-0032256-T01-IM6	SOMATIC	OXCT1	MAP3K1	5	5	41850660	56181774	Intron of OXCT1(-):379bp before exon 5	Exon 17 of MAP3K1(+)		GRCh37	INVERSION	10	33	Protein Fusion: mid-exon  {OXCT1:MAP3K1}	PRECISE	5to5	OXCT1 (NM_00043) - MAP3K1 (NM_005921) Rearrangement : c.415-379:OXCT1_c.3998:MAP3K1inv	yes	unknown	14331114	22811	15589	0	37
P-0037925-T01-IM6	SOMATIC	OXSR1	MYD88	3	3	38182163	38214127	Intron of MYD88(+):84bp before exon 4	Intron of OXSR1(+):7Kb after exon 1		GRCh37	DUPLICATION	10	53	Protein Fusion: out of frame  {OXSR1:MYD88}	PRECISE	5to3	OXSR1 (NM_005109) - MYD88 (NM_002468) rearrangement: c.70+6690:OXSR1_c.684-85:MYD88dup	yes	unknown	31964	2827	3075	0	55
P-0066085-T01-IM7	SOMATIC	P2RX5	CDKN2A	17	9	3594849	21971089	Intron of P2RX5(-):88bp after exon 2	Exon 2 of CDKN2A(-)		GRCh37	TRANSLOCATION	10	108	Protein Fusion: mid-exon  {P2RX5:CDKN2A}	PRECISE	5to3	P2RX5 (NM_002561) - CDKN2A (NM_058195) rearrangement: t(9;17)(p21.3;p13.2)(chr9:g.21971089::chr17:g.3594849)	yes	unknown	0	0	0	0	128
P-0006172-T01-IM5	SOMATIC	P2RY8	NTRK1	X	1	1598513	156838012	5-UTR of P2RY8(-): 13Kb before coding start	Exon 6 of NTRK1(+)		GRCh37	TRANSLOCATION	9	14	Protein fusion: mid-exon (NTRK1-P2RY8)	PRECISE	3to3	P2RY8(NM_178129) - NTRK1 (NM_002529) rearrangement: t(X;1)(chrX:g.1598513::chr1:g.156838012)	yes	unknown	0	0	0	0	13
P-0069809-T01-IM7	SOMATIC	PAK1	PAK1	11	11	77064715	77152271	Intron of PAK1(-):71bp before exon 8	5-UTR of PAK1(-):118Kb before coding start		GRCh37	DELETION	10	22	Deletion within transcript	PRECISE	3to5	PAK1 (NM_002576) rearrangement: c.773-71:PAK1_chr11:g.77152271del	yes	unknown	87556	5212	10030	0	23
P-0051894-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77051808	77054864	Exon 11 of PAK1(-)	Exon 10 of PAK1(-)		GRCh37	DELETION	7	3	Deletion within transcript : mid-exon	PRECISE	3to5	PAK1 (NM_002576) rearrangement: c.998_c.999del	yes	unknown	3056	629	879	0	3
P-0043277-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77051789	77059074	Exon 11 of PAK1(-)	Intron of PAK1(-):1Kb after exon 9		GRCh37	DELETION	8	3	Deletion within transcript : mid-exon	PRECISE	3to5	PAK1 (NM_002576) rearrangement: c.885+1210_c.1018del	yes	unknown	7285	1920	3275	0	3
P-0073232-T01-IM7	SOMATIC	PAK1	PAK1	11	11	77090843	77094255	Intron of PAK1(-):95bp after exon 3	Intron of PAK1(-):3Kb before exon 3		GRCh37	DUPLICATION	3	2	Duplication of 1 exon : out of frame	PRECISE	5to3	PAK1 (NM_002576) rearrangement: c.191-3216_c.291+96dup	yes	unknown	3412	1130	928	0	2
P-0071091-T01-IM7	SOMATIC	PAK1	AAMDC	11	11	77085509	77538904	Intron of PAK1(-):99bp before exon 5	5-UTR of AAMDC(+):15Kb before coding start		GRCh37	DELETION	10	13	PAK1-intragenic	PRECISE	3to5	PAK1 (NM_002576) rearrangement: c.440-99:PAK1_chr11:g.77538904del	yes	unknown	453395	6404	10731	0	13
P-0067079-T01-IM7	SOMATIC	PAK1	PAK1	12	11	59436982	77054907	IGR: 171Kb before LRIG3(-)	Exon 10 of PAK1(-)		GRCh37	TRANSLOCATION	10	12	PAK1-intragenic	PRECISE	5to5	PAK1 (NM_002576) rearrangement: t(11;12)(q13.5;q14.1)(chr11:g.77054907::chr12:g.59436982)	yes	unknown	0	0	0	0	21
P-0049506-T02-IM6	SOMATIC	PAK1	FDX1	11	11	77069833	110310529	Intron of PAK1(-):109bp after exon 6	Intron of FDX1(+):4Kb after exon 2		GRCh37	INVERSION	10	68	Protein Fusion: out of frame  {PAK1:FDX1}	PRECISE	5to5	PAK1 (NM_002576) - FDX1 (NM_004109) rearrangement: c.597+110:PAK1_c.310+3847:FDX1inv	yes	unknown	33240696	150009	245926	0	73
P-0071585-T01-IM7	SOMATIC	PAK1	PAK1	11	11	71239234	77064566	Promoter of KRTAP5-7(+):922bp from tx start	Intron of PAK1(-):14bp after exon 8		GRCh37	INVERSION	10	8	Transcript Fusion {KRTAP5-7:PAK1}	PRECISE	3to3	PAK1 (NM_002576) rearrangement: c.836+15:PAK1_chr11:g.71239234inv	yes	unknown	5825332	58177	21581	0	9
P-0015378-T01-IM6	SOMATIC	PAK7	PAK7	20	20	9546869	9631773	Exon 6 of PAK7(-)	5-UTR of PAK7(-): 7Kb before coding start		GRCh37	DELETION	39	34	Deletion within transcript: mid-exon	PRECISE	3to5	PAK7 (NM_177990) rearrangement: c.1153_c.-11-6786del	yes	unknown	84904	7045	12676	0	29
P-0059159-T01-IM7	SOMATIC	PAK7	PAK7	20	20	8945049	9538171	IGR: 105Kb before PLCB4(+)	Intron of PAK7(-):83bp after exon 7		GRCh37	DELETION	10	10	PAK7-intragenic	PRECISE	3to5	PAK7 (NM_177990) rearrangement: c.1743+84:PAK7_chr20:g.8945049del	yes	unknown	593122	4881	7036	0	12
P-0042874-T01-IM6	SOMATIC	PAK7	GALR1	20	18	9546741	75150951	Exon 5 of PAK7(-)	IGR: 189Kb before GALR1(+)		GRCh37	TRANSLOCATION	10	12	PAK7-intragenic	PRECISE	5to5	PAK7 (NM_177990) rearrangement: t(18;20)(q23;p12.2)(chr18:g.75150951::chr20:g.9546741)	yes	unknown	0	0	0	0	13
P-0063676-T03-IM7	SOMATIC	PAK7	HNF4G	20	8	9624939	76648702	Exon 3 of PAK7(-)	IGR: 196Kb before HNF4G(+)		GRCh37	TRANSLOCATION	10	44	PAK7-intragenic	PRECISE	5to5	PAK7 (NM_177990) rearrangement: t(8;20)(q21.11;p12.2)(chr8:g.76648702::chr20:g.9624939)	yes	unknown	0	0	0	0	51
P-0012782-T01-IM5	SOMATIC	PAK7		20	20	6319114	9524889	IGR: 264Kb before FERMT1(-)	Intron of PAK7(-): 127bp after exon 9		GRCh37	DELETION			PAK7-intragenic	PRECISE	3to5	PAK7 (NM_177990) rearrangement: chr20:g.9524889_c.1869+127:PAK7del			3205775	9473	8291	0	19
P-0067297-T01-IM7	SOMATIC	PAK7	BTBD3	20	20	9525098	11886411	Exon 8 of PAK7(-)	Intron of BTBD3(+):13Kb before exon 2		GRCh37	INVERSION	10	27	Protein Fusion: mid-exon  {BTBD3:PAK7}	PRECISE	3to3	PAK7 (NM_177990) rearrangement: c.1787:PAK7_chr20:g.11886411inv	yes	unknown	2361313	16800	44921	0	27
P-0072844-T02-IM7	SOMATIC	PAK7	PAK7	20	20	9168048	9561315	5-UTR of PLCB4(+):120Kb before coding start	Exon 4 of PAK7(-)		GRCh37	INVERSION	10	281	Protein Fusion: mid-exon  {PLCB4:PAK7}	PRECISE	3to3	PAK7 (NM_177990) rearrangement: c.467:PAK7_chr20:g.9168048inv	yes	unknown	393267	12992	33371	0	280
P-0086357-T02-IM7	SOMATIC	PALB2		16	16	23619220	23620049	Exon 12 of PALB2(-)	Intron of PALB2(-):716bp before exon 12		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	PALB2 (NM_024675) rearrangement: c.3202-716_c.3315inv			829	892	1337	0	24
P-0033496-T01-IM6	SOMATIC	PALB2		16	16	23619288	23621327	Exon 12 of PALB2(-)	Intron of PALB2(-):2Kb before exon 12		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PALB2 (NM_024675) rearrangement: c.3202-1994_c.3247del			2039	485	561	0	10
P-0055542-T01-IM6	SOMATIC	PALB2		16	16	23647121	23647913	Exon 4 of PALB2(-)	Intron of PALB2(-):258bp before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	PALB2 (NM_024675) rearrangement: c.212-258_c.746del			792	3917	3045	0	4
P-0079770-T01-IM7	SOMATIC	PALB2	PLK1	16	16	23619179	23688112	Intron of PALB2(-):5bp after exon 12	Promoter of PLK1(+):2Kb from tx start		GRCh37	DELETION	4	3	PALB2-intragenic	PRECISE	3to5	PALB2 (NM_024675) rearrangement: c.3350+6:PALB2_chr16:g.23688112del	yes	unknown	68933	26341	47660	0	3
P-0007065-T01-IM5	SOMATIC	PALB2		16	16	23646416	23663486	Exon 4 of PALB2(-)	Intron of DCTN5(+): 6Kb before exon 3		GRCh37	DELETION			PALB2-intragenic	PRECISE	3to5	PALB2 (NM_024675) rearrangement : c.1451:PALB2_c.118-6342:DCTN5del			17070	15760	15182	0	20
P-0008705-T01-IM5	SOMATIC	PALB2		16	11	23614820	35264295	Exon 13 of PALB2(-)	IGR: 8Kb before SLC1A2(-)		GRCh37	TRANSLOCATION			PALB2-intragenic	PRECISE	5to5	PALB2 (NM_024675) rearrangement: t(11;16)(p13;p12.2)(chr11:g.35264295::chr16:g.23614820)			0	0	0	0	33
P-0028994-T01-IM6	SOMATIC	PALB2	TRIM44	16	11	23641408	35689178	Exon 5 of PALB2(-)	Intron of TRIM44(+):4Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {PALB2:TRIM44}	PRECISE	5to5	PALB2 (NM_024675) - TRIM44 (NM_017583) Rearrangement : t(11,16)(p13,p12.2)(chr11:g.35689178::chr16:g.23641408)			0	0	0	0	31
P-0019153-T01-IM6	SOMATIC	PALB2		16	16	23632914	23726499	Intron of PALB2(-):115bp before exon 10	Promoter of ERN2(-):25Kb from tx start		GRCh37	DELETION			Transcript Fusion {ERN2:PALB2}	PRECISE	3to5	PALB2 (NM_024675) rearrangement: c.2997-115_g.23726499del			93585	34106	37791	0	9
P-0078037-T01-IM7	SOMATIC	PAN3	CDK8	13	13	26959455	28731671	Exon 6 of CDK8(+)	Intron of PAN3(+):17Kb before exon 2		GRCh37	DUPLICATION	0	7	Protein Fusion: mid-exon  {PAN3:CDK8}	IMPPRECISE	5to3	PAN3 (NM_175854) - CDK8 (NM_001260) rearrangement: c.431-16738:PAN3_c.622:CDK8dup	yes	unknown	1772216	32253	412042	0	7
P-0043246-T01-IM6	SOMATIC	PAN3	FLT1	13	13	28764068	28896637	Intron of PAN3(+):7Kb before exon 5	Intron of FLT1(-):141bp before exon 22		GRCh37	INVERSION	10	13	Protein Fusion: out of frame  {PAN3:FLT1}	PRECISE	3to3	PAN3 (NM_175854) - FLT1 (NM_002019) rearrangement: c.691-7254:PAN3_c.2954-141:FLT1inv	yes	unknown	132569	11369	16647	0	13
P-0036253-T01-IM6	SOMATIC	PAPSS2	PTEN	10	10	89483710	89692704	Intron of PAPSS2(+):3Kb before exon 8	Intron of PTEN(+):65bp before exon 5		GRCh37	DELETION	10	22	Protein Fusion: in frame  {PAPSS2:PTEN}	PRECISE	3to5	PAPSS2 (NM_001015880) - PTEN (NM_000314) rearrangement: c.880+2183:PAPSS2 _c.254-66:PTENdel	yes	unknown	208994	3591	395	0	25
P-0001428-T01-IM3	SOMATIC	PARD3B	ERBB4	2	2	205485556	212252597	Intron of PARD3B(+): 65Kb before exon 2	Intron of ERBB4(-): 73bp after exon 26		GRCh37	DELETION	4	5	Antisense fusion	PRECISE	3to5	None	yes	unknown	6767041	44257	43290	0	5
P-0024793-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162661462	162864255	Intron of PARK2(-):22Kb after exon 3	Intron of PARK2(-):86bp after exon 2		GRCh37	DELETION	0	10	Deletion of 1 exon : out of frame	IMPPRECISE	3to5	PARK2 (NM_004562) Rearrangement : c.171+87_c.412+22095del	yes	unknown	202793	2386	1438	0	11
P-0045344-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162581492	162683465	Intron of PARK2(-):41Kb after exon 4	Intron of PARK2(-):91bp after exon 3		GRCh37	DELETION	10	10	Deletion of 1 exon : out of frame	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.412+92_c.534+40671del	yes	unknown	101973	899	899	0	10
P-0029928-T01-IM6	SOMATIC	PARK2		6	6	162170166	162647065	Intron of PARK2(-):37Kb after exon 7	Intron of PARK2(-):25Kb before exon 4		GRCh37	DELETION			Deletion of 4 exons : in frame	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.413-24781_c.871+36638del			476899	5087	4343	0	11
P-0018294-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162864482	162896705	Exon 2 of PARK2(-)	Intron of PARK2(-):32Kb before exon 2		GRCh37	DELETION	10	52	Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.4970_g.112190339del	yes	unknown	32223	353	382	0	53
P-0031352-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162817805	162864466	Intron of PARK2(-):47Kb after exon 2	Exon 2 of PARK2(-)		GRCh37	DELETION	8	8	Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.171+46537_c.47del	yes	unknown	46661	1055	595	0	8
P-0045153-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162864448	162892195	Exon 2 of PARK2(-)	Intron of PARK2(-):28Kb before exon 2		GRCh37	DELETION	10	3	Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.8-27690_c.65del	yes	unknown	27747	577	630	0	4
P-0027307-T01-IM6	SOMATIC	PARK2		6	6	162622284	162644833	Exon 4 of PARK2(-)	Intron of PARK2(-):23Kb before exon 4		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.413-22549_c.413del			22549	119	75	0	4
P-0037180-T01-IM6	SOMATIC	PARK2		6	6	162683713	162856726	Exon 3 of PARK2(-)	Intron of PARK2(-):8Kb after exon 2		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.171+7616_c.256del			173013	862	624	0	20
P-0045221-T01-IM6	SOMATIC	PARK2		6	6	162683797	162757728	Exon 3 of PARK2(-)	Intron of PARK2(-):74Kb before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.172-73931_c.172del			73931	219	223	0	27
P-0011455-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162394398	162449996	Exon 6 of PARK2(-)	Intron of PARK2(-): 25Kb after exon 5		GRCh37	DELETION	38	28	Deletion within transcript: mid-exon	PRECISE	3to5	PARK2 (NM_004562) Rearrangement : c.618+25127_c.670del	yes	unknown	55598	331	268	0	28
P-0006864-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162763179	162864351	Intron of PARK2(-): 79Kb before exon 3	Exon 2 of PARK2(-)		GRCh37	DELETION	9	6	Deletion within transcript: mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.162_c.172-79382del	yes	unknown	101172	936	683	0	6
P-0007169-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162394382	162603962	Exon 6 of PARK2(-)	Intron of PARK2(-): 18Kb after exon 4		GRCh37	DELETION	18	11	Deletion within transcript: mid-exon	PRECISE	3to5	PARK2 (NM_004562) rearrangement: c.534+18201_c.686del	yes	unknown	209580	2922	2209	0	10
P-0002702-T01-IM3	SOMATIC	PARK2	PARK2	6	6	162321422	162475147	Intron of PARK2(-): 73Kb after exon 6	Exon 5 of PARK2(-)		GRCh37	DELETION	71	68	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	153725	4228	1506	0	74
P-0016815-T01-IM6	SOMATIC	PARK2		6	6	158228249	161969802	IGR: 16Kb before SNX9(+)	Intron of PARK2(-):83bp after exon 9		GRCh37	INVERSION			PARK2-intragenic	PRECISE	5to5	PARK2 (NM_004562) rearrangement: g.158228249_c.1083+84:PARK2inv			3741553	6501	9883	0	6
P-0017882-T01-IM6	SOMATIC	PARK2		18	6	48058391	162170030	IGR: 28Kb before MAPK4(+)	Intron of PARK2(-):37Kb after exon 7		GRCh37	TRANSLOCATION			PARK2-intragenic	PRECISE	5to3	PARK2 (NM_004562) rearrangement: t(6;18)(q26;q21.2)(chr6:g.162170030::chr18:g.48058391)			0	0	0	0	27
P-0021862-T01-IM6	SOMATIC	PARK2		7	6	98151994	162206907	IGR: 95Kb before NPTX2(+)	Exon 7 of PARK2(-)		GRCh37	TRANSLOCATION			PARK2-intragenic	PRECISE	3to3	PARK2 (NM_004562) rearrangement: t(6;7)(p22.3;q22.1)(chr6:g.162206907::chr7:g.98151994)			0	0	0	0	74
P-0053276-T01-IM6	SOMATIC	PARP1		17	1	74529593	226549627	Intron of CYGB(-):2Kb before exon 2	Intron of PARP1(-):42bp after exon 22		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	PARP1 (NM_001618) rearrangement: t(1;17)(q42.12;q25.1)(chr1:g.226549627::chr17:g.74529593)			0	0	0	0	60
P-0022364-T01-IM6	SOMATIC	PARP1		1	1	162434663	226553616	IGR: 32Kb before UHMK1(+)	Intron of PARP1(-):38bp after exon 18		GRCh37	INVERSION			PARP1-intragenic	PRECISE	5to5	PARP1 (NM_001618) rearrangement: chr1:g.162434663_c.2505+39inv			64118953	210123	328677	0	3
P-0041666-T01-IM6	SOMATIC	PARP1		1	1	226542797	226552847	IGR: 6Kb before PARP1(-)	Exon 19 of PARP1(-)		GRCh37	DUPLICATION			PARP1-intragenic	PRECISE	5to3	PARP1 (NM_001618) rearrangement: c.2514:PARP1_chr1:g.226542797dup			10050	7188	7361	0	16
P-0087742-T01-IM7	SOMATIC	PARP1		12	1	646929	226549734	Intron of B4GALNT3(+):1Kb after exon 3	Exon 22 of PARP1(-)		GRCh37	TRANSLOCATION			PARP1-intragenic	PRECISE	5to3	PARP1 (NM_001618) rearrangement: t(1;12)(q42.12;p13.33)(chr1:g.226549734::chr12:g.646929)			0	0	0	0	4
P-0060676-T01-IM7	SOMATIC	PARP1	NUP210L	1	1	154083076	226595348	Intron of NUP210L(-):6Kb before exon 13	Intron of PARP1(-):162bp after exon 1		GRCh37	DELETION	10	20	Protein Fusion: in frame  {PARP1:NUP210L}	PRECISE	3to5	PARP1 (NM_001618) - NUP210L (NM_207308) rearrangement: c.120+163:PARP1_c.1621-6390:NUP210Ldel	yes	unknown	72512272	448106	905015	0	20
P-0010083-T01-IM5	SOMATIC	PARP12	BRAF	7	7	139759028	140491237	Intron of PARP12(-): 1Kb before exon 2	Intron of BRAF(-): 3Kb after exon 8		GRCh37	INVERSION	13	12	BRAF-PARP12 fusion	PRECISE	3to3	PARP12 (NM_022750) - BRAF (NM_004333) rearrangement: c.327-1194:PARP12_c.1140+2871;BRAFinv.	yes	unknown	732209	97873	120079	0	12
P-0045257-T02-IM6	SOMATIC	PAX5	PAX5	9	9	36990725	37006344	Intron of PAX5(-):12Kb after exon 5	Intron of PAX5(-):125bp after exon 4		GRCh37	DELETION	8	6	Deletion of 1 exon : in frame	PRECISE	3to5	PAX5 (NM_016734) rearrangement: c.475+126_c.604+11920del	yes	unknown	15619	1274	1001	0	6
P-0005855-T01-IM5	SOMATIC	PAX5		9	9	36923396	36929355	Exon 7 of PAX5(-)	Intron of PAX5(-): 6Kb before exon 7		GRCh37	DUPLICATION			Duplication within transcript: mid-exon	PRECISE	5to3	PAX5 (NM_016734) rearrangement: c.781-5874_c.866dup			5959	593	580	0	20
P-0012241-T01-IM5	SOMATIC	PAX5	PAX5	9	9	36970568	37015039	Intron of PAX5(-): 4Kb before exon 6	Exon 3 of PAX5(-)		GRCh37	INVERSION	48	43	PAX5-intragenic	PRECISE	3to3	PAX5 (NM_016734) Rearrangement: c.365_c.605-3847inv	yes	unknown	44471	4919	6022	0	43
P-0076452-T01-IM7	SOMATIC	PAX5	PAX5	9	9	35635723	37002828	IGR: 14Kb before SIT1(-)	Intron of PAX5(-):55bp before exon 5		GRCh37	DELETION	10	8	PAX5-intragenic	PRECISE	3to5	PAX5 (NM_016734) rearrangement: c.476-55:PAX5_chr9:g.35635723del	yes	unknown	1367105	22988	17151	0	9
P-0078243-T02-IM7	SOMATIC	PAX5	PAX5	9	9	19396883	37002718	IGR: 12Kb before ACER2(+)	Exon 5 of PAX5(-)		GRCh37	DELETION	10	44	PAX5-intragenic	PRECISE	3to5	PAX5 (NM_016734) rearrangement: c.531:PAX5_chr9:g.19396883del	yes	unknown	17605835	178785	167395	0	44
P-0008712-T01-IM5	SOMATIC	PAX5		9	9	29168844	36923291	IGR: 280Kb before MIR873(-)	Intron of PAX5(-): 61bp after exon 7		GRCh37	DELETION			PAX5-intragenic	PRECISE	3to5	PAX5 (NM_016734) rearrangement: c.910+61_chr9:g.29168844del			7754447	17282	19423	0	12
P-0016093-T01-IM6	SOMATIC	PAX5		9	9	13718261	36882041	IGR: 210Kb before LINC00583(+)	Exon 8 of PAX5(-)		GRCh37	INVERSION			PAX5-intragenic	PRECISE	5to5	PAX5 (NM_016734) rearrangement : g.13718261_c.972:PAX5inv			23163780	80579	80861	0	31
P-0037236-T01-IM6	SOMATIC	PAX5	PAX5	17	9	8339095	36923458	Promoter of NDEL1(+):74bp from tx start	Exon 7 of PAX5(-)		GRCh37	TRANSLOCATION	10	50	Protein Fusion: mid-exon  {PAX5:NDEL1}	PRECISE	5to5	PAX5 (NM_016734) rearrangement: t(9;17)(p13.2;p13.1)(chr9:g.36923458::chr17:g.8339095)	yes	unknown	0	0	0	0	61
P-0029690-T03-IM7	SOMATIC	PAX8	PAX8	2	2	113502397	113981429	Intron of CKAP2L(-):2Kb after exon 6	Intron of PAX8(-):3Kb after exon 10		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	PAX8 (NM_003466) rearrangement: c.1189+3303:PAX8_chr2:g.113502397inv	yes	unknown	479032	20838	54763	0	17
P-0038901-T01-IM6	SOMATIC	PAX8	NUP35	2	2	113987160	184698547	Intron of PAX8(-):2Kb before exon 10	IGR: 709Kb before NUP35(+)		GRCh37	DELETION	10	38	PAX8-intragenic	PRECISE	3to5	PAX8 (NM_003466) rearrangement: c.1088-2327:PAX8_chr2:g.184698547del	yes	unknown	70711387	129068	146158	0	38
P-0036672-T02-IM6	SOMATIC	PAX8	PAX8	2	2	113984853	114033174	Intron of PAX8(-):20bp before exon 10	Intron of PAX8(-):3Kb after exon 2		GRCh37	INVERSION	10	11	PAX8-intragenic	PRECISE	3to3	PAX8 (NM_003466) rearrangement: c.25+2773_c.1088-20inv	yes	unknown	48321	45266	76308	0	11
P-0079861-T01-IM7	SOMATIC	PAX8	NXPH2	2	2	113983764	139490097	Intron of PAX8(-):967bp after exon 10	Intron of NXPH2(-):48Kb after exon 1		GRCh37	INVERSION	10	23	PAX8-intragenic	PRECISE	3to3	PAX8 (NM_003466) rearrangement: c.1189+968:PAX8_chr2:g.139490097inv	yes	unknown	25506333	120606	287707	0	23
P-0068398-T02-IM7	SOMATIC	PAX8		2	1	113978495	205460622	Intron of PAX8(-):740bp before exon 11	IGR: 13Kb before CDK18(+)		GRCh37	TRANSLOCATION			PAX8-intragenic	PRECISE	3to5	PAX8 (NM_003466) rearrangement: t(1;2)(q32.1;q13)(chr1:g.205460622::chr2:g.113978495)			0	0	0	0	22
P-0017011-T01-IM6	SOMATIC	PAX8	CCDC141	2	2	113981389	179838736	Intron of PAX8(-):3Kb after exon 10	Intron of CCDC141(-):1Kb after exon 4		GRCh37	DUPLICATION	10	9	Protein Fusion: in frame  {PAX8:CCDC141}	PRECISE	5to3	PAX8 (NM_003466) - CCDC141 (NM_173648) Rearrangement : c.1189+3343:PAX8_c.526+1048:CCDC141dup	yes	unknown	65857347	154845	237654	0	9
P-0080062-T01-IM7	SOMATIC	PAX8	BUB1	2	2	111397593	113978321	Intron of BUB1(-):168bp before exon 24	Intron of PAX8(-):566bp before exon 11		GRCh37	DELETION	10	55	Protein Fusion: out of frame  {PAX8:BUB1}	PRECISE	3to5	PAX8 (NM_003466) - BUB1 (NM_004336) rearrangement: c.1190-566:PAX8_c.2956-168:BUB1del	yes	unknown	2580728	34812	45066	0	55
P-0033399-T01-IM6	SOMATIC	PAXBP1	SPOP	21	17	34122819	47699480	Intron of PAXBP1(-):408bp after exon 10	Intron of SPOP(-):51bp before exon 3		GRCh37	TRANSLOCATION	10	36	Protein Fusion: out of frame  {PAXBP1:SPOP}	PRECISE	5to3	PAXBP1 (NM_013329) - SPOP (NM_001007228) rearrangement: t(17;21)(q21.33;q22.11)(chr17:g.47699480::chr21:g.:34122819)	yes	unknown	0	0	0	0	34
P-0076610-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52428665	52651328	Exon 67 of DNAH1(+)	Exon 15 of PBRM1(-)		GRCh37	DELETION	10	35	Antisense Fusion	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.1768:PBRM1_chr3:g.52428665del	yes	unknown	222663	44959	52572	0	35
P-0023156-T01-IM6	SOMATIC	PBRM1		3	3	52712343	52719394	Intron of PBRM1(-):172bp after exon 3	5-UTR of PBRM1(-):137Kb before coding start		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	PBRM1 (NM_018313) Rearrangement : c.-13+371_c.236+173inv			7051	3629	2187	0	4
P-0047288-T07-IM6	SOMATIC	PBRM1		3	3	52408809	52584431	Intron of DNAH1(+):446bp before exon 45	Intron of PBRM1(-):5bp after exon 29		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.4576+6:PBRM1_chr3:g.52408809del			175622	34114	34106	0	23
P-0069103-T01-IM7	SOMATIC	PBRM1		3	3	52596370	52598061	Intron of PBRM1(-):386bp before exon 26	Intron of PBRM1(-):4bp after exon 24		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.3800+5_c.3931-386del			1691	1825	1708	0	83
P-0056305-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52631383	52658782	Intron of PBRM1(-):6Kb after exon 18	Intron of PBRM1(-):3Kb after exon 14		GRCh37	DELETION	10	8	Deletion of 4 exons : out of frame	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.1541+2507_c.2779+6154del	yes	unknown	27399	11168	5000	0	8
P-0067443-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52659000	52678876	Intron of PBRM1(-):2Kb after exon 14	Intron of PBRM1(-):71bp before exon 9		GRCh37	DELETION	10	13	Deletion of 6 exons : out of frame	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.814-71_c.1541+2289del	yes	unknown	19876	5703	6125	0	13
P-0029398-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52712629	52714198	Intron of PBRM1(-):16bp before exon 3	5-UTR of PBRM1(-):132Kb before coding start		GRCh37	DELETION	10	11	Deletion within transcript	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.139-16_c.-12-459del	yes	unknown	1569	1105	1625	0	12
P-0045875-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52613808	52620592	Intron of PBRM1(-):593bp before exon 22	Exon 21 of PBRM1(-)		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.3161_c.3313-593del	yes	unknown	6784	1048	1078	0	21
P-0065087-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52614149	52621418	Intron of PBRM1(-):934bp before exon 22	Exon 20 of PBRM1(-)		GRCh37	DELETION	10	30	Deletion within transcript : mid-exon	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.2999_c.3313-934del	yes	unknown	7269	2201	860	0	32
P-0033848-T01-IM6	SOMATIC	PBRM1		3	3	52584482	52626703	Exon 29 of PBRM1(-)	Intron of PBRM1(-):3Kb before exon 19		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.2780-3432_c.4531del			42221	19954	25070	0	4
P-0056931-T01-IM6	SOMATIC	PBRM1		3	3	52695718	52696241	Intron of PBRM1(-):430bp after exon 5	Exon 5 of PBRM1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.436_c.528+431del			523	1156	1123	0	4
P-0071122-T01-IM7	SOMATIC	PBRM1		3	3	52612985	52696292	Intron of PBRM1(-):84bp after exon 22	Exon 5 of PBRM1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.385_c.3458+85del			83307	16242	22692	0	21
P-0062725-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52588897	52693968	Intron of PBRM1(-):2bp before exon 27	Intron of PBRM1(-):2Kb before exon 6		GRCh37	DUPLICATION	10	24	Duplication of 21 exons : out of frame	PRECISE	5to3	PBRM1 (NM_018313) rearrangement: c.529-1637_c.4133-2dup	yes	unknown	105071	53756	69932	0	24
P-0008938-T04-IM6	SOMATIC	PBRM1		3	3	52678645	52693930	Intron of PBRM1(-):74bp after exon 9	Intron of PBRM1(-):2Kb before exon 6		GRCh37	DUPLICATION			Duplication of 4 exons : out of frame	IMPPRECISE	5to3	PBRM1 (NM_018313) rearrangement: c.899+75_c.529-1599dup			15285	7151	9103	0	5
P-0012110-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52584306	52611167	Intron of PBRM1(-): 131bp after exon 29	Intron of PBRM1(-): 453bp before exon 23		GRCh37	DUPLICATION	6	5	Duplication of 7 exons: out of frame	PRECISE	5to3	PBRM1 (NM_018313) Rearrangement :  c.4576+131_c.3459-453dup	yes	unknown	26861	22212	23494	0	4
P-0060953-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52604889	52620682	Intron of PBRM1(-):6Kb after exon 23	Exon 21 of PBRM1(-)		GRCh37	DUPLICATION	0	9	Duplication within transcript : mid-exon	IMPPRECISE	5to3	PBRM1 (NM_018313) rearrangement: c.3071_c.3616+5668dup	yes	unknown	15793	4291	7679	0	9
P-0042741-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52601601	52620627	Intron of PBRM1(-):3Kb before exon 24	Exon 21 of PBRM1(-)		GRCh37	DUPLICATION	10	43	Duplication within transcript : mid-exon	PRECISE	5to3	PBRM1 (NM_018313) rearrangement: c.3126_c.3617-3352dup	yes	unknown	19026	3333	4434	0	45
P-0007037-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52703304	52712581	Intron of PBRM1(-): 643bp before exon 4	Exon 3 of PBRM1(-)		GRCh37	DUPLICATION	35	15	Duplication within transcript: mid-exon	PRECISE	5to3	PBRM1 (NM_018313) rearrangement :  c.171_237-643dup	yes	unknown	9277	964	1114	0	15
P-0010689-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52618277	52649455	Intron of PBRM1(-): 2Kb after exon 21	Exon 16 of PBRM1(-)		GRCh37	DUPLICATION	51	39	Duplication within transcript: mid-exon	PRECISE	5to3	PBRM1 (NM_018313) rearrangement: c.1836_c.3312+2164dup	yes	unknown	31178	23484	25561	0	37
P-0041310-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	39820565	52675942	IGR: 30Kb before MYRIP(+)	Intron of PBRM1(-):27bp after exon 11		GRCh37	DELETION	10	30	PBRM1-intragenic	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.1087+28:PBRM1_chr3:g.39820565del	yes	unknown	12855377	196115	214269	0	47
P-0008267-T01-IM5	SOMATIC	PBRM1		3	3	52713624	53498367	Exon 2 of PBRM1(-)	IGR: 31Kb before CACNA1D(+)		GRCh37	DELETION			PBRM1-intragenic	PRECISE	3to5	PBRM1 (NM_018313) rearrangement: c.104:PBRM1_chr3.g.53498367del			784743	765	900	0	5
P-0016296-T01-IM6	SOMATIC	PBRM1		3	3	52327928	52702712	3-UTR of GLYCTK(+):4Kb after coding stop	Intron of PBRM1(-):51bp before exon 4		GRCh37	DUPLICATION			PBRM1-intragenic	PRECISE	5to3	PBRM1 (NM_018313) rearrangement :  chr3:g.52327928_c.237-51:PBRM1dup			374784	79866	113766	0	9
P-0030184-T01-IM6	SOMATIC	PBRM1		3	3	22617724	52584627	IGR: 619Kb before ZNF385D-AS2(+)	Exon 29 of PBRM1(-)		GRCh37	DELETION			PBRM1-intragenic	PRECISE	3to5	PBRM1 (NM_018313) rearrangement:     c.4386:PBRM1_chr3:g.22617724del			29966903	227420	238638	0	13
P-0041193-T01-IM6	SOMATIC	PBRM1		4	3	17436245	52637879	IGR: 52Kb before QDPR(-)	Intron of PBRM1(-):131bp before exon 18		GRCh37	TRANSLOCATION			PBRM1-intragenic	PRECISE	3to3	PBRM1 (NM_018313) rearrangement: t(3;4)(p21.1;p15.32)(chr3:g.52637879::chr4:g.17436245)			0	0	0	0	5
P-0069195-T01-IM7	SOMATIC	PBRM1		16	3	22396945	52702585	IGR: 34Kb before RRN3P3(-)	Exon 4 of PBRM1(-)		GRCh37	TRANSLOCATION			PBRM1-intragenic	PRECISE	3to3	PBRM1 (NM_018313) rearrangement: t(3;16)(p21.1;p12.2)(chr3:g.52702585::chr16:g.22396945)			0	0	0	0	12
P-0051214-T01-IM6	SOMATIC	PBRM1	IQCF1	3	3	51936529	52584810	Intron of IQCF1(-):471bp after exon 2	Exon 28 of PBRM1(-)		GRCh37	DELETION	6	2	Protein Fusion: mid-exon  {PBRM1:IQCF1}	PRECISE	3to5	PBRM1 (NM_018313) - IQCF1 (NM_152397) rearrangement: c.4312:PBRM1_c.108+472:IQCF1del	yes	unknown	648281	36739	8626	0	1
P-0082362-T01-IM7	SOMATIC	PBRM1	STAB1	3	3	52543775	52584784	Intron of STAB1(+):110bp before exon 23	Exon 28 of PBRM1(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {PBRM1:STAB1}	IMPPRECISE	5to5	PBRM1 (NM_018313) - STAB1 (NM_015136) rearrangement: c.4338:PBRM1_c.2348-111:STAB1inv			41009	3628	4921	0	8
P-0032228-T01-IM6	SOMATIC	PBX2	NOTCH4	6	6	32156661	32166887	Intron of PBX2(-):88bp before exon 2	Exon 24 of NOTCH4(-)		GRCh37	DUPLICATION	10	8	Protein Fusion: mid-exon  {PBX2:NOTCH4}	PRECISE	5to3	PBX2 (NM_002586) - NOTCH4 (NM_004557) rearrangement: c.222-88:PBX2_c.4351:NOTCH4dup	yes	unknown	10226	15187	14880	0	8
P-0008426-T01-IM5	SOMATIC	PCBP3	NCOA3	21	20	47336467	46268900	Intron of PCBP3(+): 1Kb before exon 9	Intron of NCOA3(+): 105bp after exon 16		GRCh37	TRANSLOCATION	0	26	Protein fusion: out of frame (NCOA3-PCBP3)	IMPRECISE	5to3	NCOA3 (NM_181659) - PCBP3 (NM_020528) Rearrangement : t(20;21)(20q13.12;21q22.3)(chr20:g.46268900::chr21:g.47336467)	yes	unknown	0	0	0	0	25
P-0051249-T01-IM6	SOMATIC	PDCD1	PDCD1	2	2	242794825	242800565	Exon 2 of PDCD1(-)	Intron of PDCD1(-):349bp after exon 1		GRCh37	DUPLICATION	10	45	Duplication within transcript : mid-exon	PRECISE	5to3	PDCD1 (NM_005018) rearrangement: c.76+350_c.384dup	yes	unknown	5740	3210	4720	0	46
P-0015829-T01-IM6	SOMATIC	PDCD1	DNER	2	2	230249523	242794656	Intron of DNER(-):3Kb after exon 11	Intron of PDCD1(-):116bp after exon 2		GRCh37	INVERSION			PDCD1-DNER Fusion	PRECISE	3to3	PDCD1 (NM_005018)  - DNER (NM_139072) rearrangement: c.436+117:PDCD1_c.1855+3458:DNERinv			12545133	16818	17762	0	5
P-0017551-T01-IM5	SOMATIC	PDCD1		2	2	242452335	242795003	IGR: 18Kb before STK25(-)	Exon 2 of PDCD1(-)		GRCh37	DELETION			PDCD1-intragenic	PRECISE	3to5	PDCD1 (NM_005018) rearrangement: chr2:g.242452335_c.206:PDCD1del			342668	5594	11051	0	32
P-0055201-T01-IM6	SOMATIC	PDCD1	PDCD1	7	2	143148998	242795124	5-UTR of EPHA1-AS1(+):72Kb before coding start	Exon 2 of PDCD1(-)		GRCh37	TRANSLOCATION	10	176	Protein Fusion: mid-exon  {EPHA1-AS1:PDCD1}	PRECISE	3to3	PDCD1 (NM_005018) rearrangement: t(2;7)(q37.3;q35)(chr2:g.242795124::chr7:g.143148998)	yes	unknown	0	0	0	0	176
P-0088143-T01-IM7	SOMATIC	PDCD1LG2		9	9	1136726	5569896	IGR: 86Kb before DMRT2(+)	Intron of PDCD1LG2(+):57bp before exon 7		GRCh37	DELETION			PDCD1LG2-intragenic	PRECISE	3to5	PDCD1LG2 (NM_025239) rearrangement: c.817-58:PDCD1LG2_chr9:g.1136726del			4433170	117476	124827	0	53
P-0073051-T01-IM7	SOMATIC	PDCD1LG2	PDCD1LG2	9	9	4621920	5534788	Intron of SPATA6L(-):487bp after exon 6	Exon 3 of PDCD1LG2(+)		GRCh37	INVERSION	10	25	Protein Fusion: mid-exon  {SPATA6L:PDCD1LG2}	PRECISE	5to5	PDCD1LG2 (NM_025239) rearrangement: c.99:PDCD1LG2_chr9:g.4621920inv	yes	unknown	912868	38440	41446	0	31
P-0053012-T01-IM6	SOMATIC	PDE1C	KMT2C	7	7	32019458	151842454	Intron of PDE1C(-):72Kb after exon 3	Intron of KMT2C(-):74bp before exon 54		GRCh37	DUPLICATION	10	22	Protein Fusion: out of frame  {PDE1C:KMT2C}	PRECISE	5to3	PDE1C (NM_001191058) - KMT2C (NM_170606) rearrangement: c.309-98985:PDE1C_c.14032-74:KMT2Cdup	yes	unknown	119822996	570846	732273	0	22
P-0036757-T01-IM6	SOMATIC	PDE3A	RECQL	12	12	20757854	21639295	Intron of PDE3A(+):9Kb before exon 3	Intron of RECQL(-):117bp after exon 6		GRCh37	DELETION	8	4	Antisense Fusion	PRECISE	3to5	RECQL (NM_032941) rearrangement: c.501+118:RECQL_chr12:g.20757854del	yes	unknown	881441	14187	19600	0	4
P-0009501-T01-IM5	SOMATIC	PDE3A	PDE3A	12	12	20290558	20784731	IGR: 232Kb before PDE3A(+)	Intron of PDE3A(+): 2Kb after exon 6		GRCh37	INVERSION	15	14	PDE3A-intragenic	PRECISE	5to5	PDE3A (NM_000921) rearrangement: chr12:g.20290558_c.1760+1670inv	yes	unknown	494173	623	617	0	14
P-0057382-T02-IM7	SOMATIC	PDE6A	PDGFRB	5	5	149298575	149515394	Intron of PDE6A(-):3Kb after exon 5	Exon 3 of PDGFRB(-)		GRCh37	DUPLICATION	5	3	Protein Fusion: mid-exon  {PDE6A:PDGFRB}	PRECISE	5to3	PDE6A (NM_000440) - PDGFRB (NM_002609) rearrangement: c.933+2623:PDE6A_c.88:PDGFRBdup	yes	unknown	216819	85787	70142	0	3
P-0065039-T01-IM7	SOMATIC	PDGFRA	IKZF2	4	2	55144652	213940984	Exon 15 of PDGFRA(+)	Intron of IKZF2(-):19Kb before exon 4		GRCh37	TRANSLOCATION	0	37	Antisense Fusion	IMPPRECISE	3to5	PDGFRA (NM_006206) rearrangement: t(2;4)(q34;q12)(chr2:g.213940984::chr4:g.55144652)	yes	unknown	0	0	0	0	37
P-0012919-T01-IM5	SOMATIC	PDGFRA		4	4	55116771	55152155	5-UTR of PDGFRA(+): 8Kb before coding start	Intron of PDGFRA(+): 25bp after exon 18		GRCh37	DUPLICATION			Duplication within transcript	PRECISE	5to3	PDGFRA (NM_006206) rearrangement: c.-12-8153_c.2562+25dup			35384	42698	39811	0	5
P-0020986-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	53132170	55138451	IGR: 215Kb before SPATA18(+)	Intron of PDGFRA(+):109bp before exon 9		GRCh37	DELETION	10	37	PDGFRA-intragenic	PRECISE	3to5	PDGFRA (NM_006206) rearrangement: chr4:g.53132170_c.1238-110:PDGFRAdel	yes	unknown	2006281	24790	50775	0	41
P-0057162-T01-IM6	SOMATIC	PDGFRA	LPHN3	4	4	55141273	61062283	Intron of PDGFRA(+):133bp after exon 12	IGR: 1Mb before LPHN3(+)		GRCh37	INVERSION	8	3	PDGFRA-intragenic	PRECISE	3to3	PDGFRA (NM_006206) rearrangement: c.1786+133:PDGFRA_chr4:g.61062283inv	yes	unknown	5921010	74297	85188	0	3
P-0061461-T01-IM7	SOMATIC	PDGFRA	PDGFRA	10	4	38213836	55143661	IGR: 25Kb before ZNF25(-)	Intron of PDGFRA(+):2bp after exon 13		GRCh37	TRANSLOCATION	10	13	PDGFRA-intragenic	PRECISE	3to5	PDGFRA (NM_006206) rearrangement: t(4;10)(q12;p11.1)(chr4:g.55143661::chr10:g.38213836)	yes	unknown	0	0	0	0	19
P-0025001-T01-IM6	SOMATIC	PDGFRA		4	4	55026895	55146647	IGR: 61Kb before GSX2(+)	Exon 16 of PDGFRA(+)		GRCh37	INVERSION			PDGFRA-intragenic	PRECISE	5to5	PDGFRA (NM_006206) rearrangement: chr4:g.55026895_c.2321inv			119752	23057	26712	0	47
P-0028940-T01-IM6	SOMATIC	PDGFRA		4	1	55146618	116439067	Exon 16 of PDGFRA(+)	IGR: 23Kb before LOC101928995(+)		GRCh37	TRANSLOCATION			PDGFRA-intragenic	PRECISE	3to3	PDGFRA (NM_006206) rearrangement: t(1;4)(p13.1;q12)(chr1:g.116439067::chr4:g.55146618)			0	0	0	0	26
P-0061692-T01-IM7	SOMATIC	PDGFRA	PDGFRA	4	4	40600526	55131120	5-UTR of RBM47(-):173Kb before coding start	Exon 5 of PDGFRA(+)		GRCh37	INVERSION	10	35	Protein Fusion: mid-exon  {PDGFRA:RBM47}	PRECISE	3to3	PDGFRA (NM_006206) rearrangement: c.663:PDGFRA_chr4:g.40600526inv	yes	unknown	14530594	54518	74703	0	35
P-0045496-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	149498314	149503255	Exon 21 of PDGFRB(-)	Intron of PDGFRB(-):491bp before exon 15		GRCh37	INVERSION	10	21	Antisense Fusion	PRECISE	5to5	PDGFRB (NM_002609) rearrangement: c.2024-491_c.2900inv	yes	unknown	4941	8283	10158	0	24
P-0062019-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	149514474	149537919	Exon 4 of PDGFRB(-)	Promoter of PDGFRB(-):45Kb from tx start		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	PDGFRB (NM_002609) rearrangement: c.470:PDGFRB_chr5:g.149537919del	yes	unknown	23445	4714	8796	0	9
P-0017509-T01-IM6	SOMATIC	PDGFRB		5	5	149490642	149503863	Promoter of PDGFRB(-):3Kb from tx start	Exon 14 of PDGFRB(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PDGFRB (NM_002609) rearrangement: c.1973_c.*4684del			13221	11468	27095	0	4
P-0066705-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	149502737	149516371	Exon 15 of PDGFRB(-)	Intron of PDGFRB(-):199bp after exon 2		GRCh37	DUPLICATION	10	15	Duplication within transcript : mid-exon	PRECISE	5to3	PDGFRB (NM_002609) rearrangement: c.40+200_c.2051dup	yes	unknown	13634	21850	25008	0	16
P-0041637-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	67335726	149514541	IGR: 150Kb before LOC102467655(+)	Exon 4 of PDGFRB(-)		GRCh37	INVERSION	10	89	PDGFRB-intragenic	PRECISE	3to3	PDGFRB (NM_002609) rearrangement: c.403:PDGFRB_chr5:g.67335726inv	yes	unknown	82178815	243271	427146	0	89
P-0044221-T01-IM6	SOMATIC	PDLIM2	SOX9	17	8	70119636	22440631	Intron of SOX9(+):47bp before exon 3	Intron of PDLIM2(+):2Kb after exon 3		GRCh37	TRANSLOCATION	10	99	Protein Fusion: out of frame  {PDLIM2:SOX9}	PRECISE	5to3	PDLIM2 (NM_021630) - SOX9 (NM_000346) rearrangement: t(8;17)(p21.3;q24.3)(chr8:g.22440631::chr17:g.70119636)	yes	unknown	0	0	0	0	99
P-0022566-T01-IM6	SOMATIC	PDPK1		16	16	2588141	12881579	Intron of PDPK1(+):4bp after exon 1	Intron of CPPED1(-):6Kb before exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	PDPK1 (NM_002613) rearrangement: c.24+4:PDPK1_chr16:g.12881579del			10293438	194790	124345	0	12
P-0073299-T01-IM7	SOMATIC	PDPK1	SLC2A13	16	12	2647347	40485612	Intron of PDPK1(+):71bp after exon 13	Intron of SLC2A13(-):13Kb after exon 1		GRCh37	TRANSLOCATION	10	13	Protein Fusion: out of frame  {PDPK1:SLC2A13}	PRECISE	3to3	PDPK1 (NM_002613) - SLC2A13 (NM_052885) rearrangement: t(12;16)(q12;p13.3)(chr12:g.40485612::chr16:g.2647347)	yes	unknown	0	0	0	0	13
P-0060394-T01-IM7	SOMATIC	PDSS2	FYN	6	6	107517927	112024127	Intron of PDSS2(-):3Kb before exon 7	Exon 5 of FYN(-)		GRCh37	DUPLICATION	10	22	Protein Fusion: mid-exon  {PDSS2:FYN}	PRECISE	5to3	PDSS2 (NM_020381) - FYN (NM_153047) rearrangement: c.1009-2869:PDSS2_c.658:FYNdup	yes	unknown	4506200	29296	273030	0	22
P-0035375-T01-IM6	SOMATIC	PDZD8	TAP1	10	6	119130943	32820038	Intron of PDZD8(-):3Kb after exon 1	Intron of TAP1(-):22bp before exon 3		GRCh37	TRANSLOCATION	10	68	Antisense Fusion	PRECISE	5to5	TAP1 (NM_000593) Rearrangement: t(6;10)(p21.32;q26.11)(chr6:g.32820038::chr10:g.119130943)	yes	unknown	0	0	0	0	70
P-0039225-T01-IM6	SOMATIC	PEMT	TP53	17	17	7577510	17485984	Exon 7 of TP53(-)	Intron of PEMT(-):6Kb before exon 2		GRCh37	DELETION	10	21	Protein Fusion: mid-exon  {PEMT:TP53}	PRECISE	3to5	PEMT (NM_148172) - TP53 (NM_000546) rearrangement: c.97-5643:PEMT_c.771:TP53del	yes	unknown	9908474	142882	102160	0	22
P-0052327-T01-IM6	SOMATIC	PEPD	POLD1	19	19	33892423	50917974	Intron of PEPD(-):203bp after exon 10	Intron of POLD1(+):97bp before exon 20		GRCh37	INVERSION	10	52	Protein Fusion: out of frame  {PEPD:POLD1}	PRECISE	5to5	PEPD (NM_000285) - POLD1 (NM_002691) rearrangement: c.967+204:PEPD_c.2389-98:POLD1inv	yes	unknown	17025551	434206	490178	0	55
P-0053249-T01-IM6	SOMATIC	PGAP3	ERBB2	17	17	37839517	37879921	Intron of PGAP3(-):1Kb after exon 3	Intron of ERBB2(+):8bp after exon 18		GRCh37	INVERSION			Protein Fusion: in frame  {PGAP3:ERBB2}	PRECISE	5to5	PGAP3 (NM_033419) - ERBB2 (NM_004448) rearrangement: c.432+1333:PGAP3_c.2208+8:ERBB2inv			40404	34507	845718	0	9
P-0065254-T03-IM7	SOMATIC	PGBD5	PGBD5	1	1	230504467	230561639	Intron of PGBD5(-):11Kb before exon 2	Exon 1 of PGBD5(-)		GRCh37	DUPLICATION	10	116	Duplication within transcript : mid-exon	PRECISE	5to3	PGBD5 (NM_001258311) rearrangement c.332-11400_c.36dup	yes	unknown	57172	2613	5933	0	124
P-0060823-T01-IM7	SOMATIC	PGBD5		1	1	230472848	230625972	Intron of PGBD5(-):5bp after exon 4	IGR: 152Kb before COG2(+)		GRCh37	DELETION			PGBD5-intragenic	PRECISE	3to5	PGBD5 (NM_001258311.1) rearrangement: c.1075+6_chr1:g.230625972del			153124	12813	9281	0	32
P-0037608-T01-IM6	SOMATIC	PGM5	TMPRSS2	21	9	42869299	71138173	Intron of TMPRSS2(-):746bp after exon 2	Intron of PGM5(+):6Kb before exon 11		GRCh37	TRANSLOCATION	10	40	Protein Fusion: in frame  {PGM5:TMPRSS2}	PRECISE	3to3	PGM5 (NM_021965) - TMPRSS2 (NM_001135099) rearrangement: t(9;21)(q21.11;q22.3)(chr9:g.71138173::chr21:g.42869299)	yes	unknown	0	0	0	0	40
P-0073666-T01-IM7	SOMATIC	PGR	PGR	11	11	100913321	100920660	Intron of PGR(-):488bp before exon 7	Exon 6 of PGR(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	PGR (NM_000926) rearrangement: c.2488_c.2489-488del	yes	unknown	7339	298	216	0	24
P-0040725-T01-IM6	SOMATIC	PGR	PGR	21	11	42365359	100920710	IGR: 148Kb before LINC00323(-)	Exon 6 of PGR(-)		GRCh37	TRANSLOCATION	10	10	PGR-intragenic	PRECISE	5to3	PGR (NM_000926) rearrangement: t(11;21)(q22.1;q22.2)(chr11:g.100920710::chr21:g.42365359)	yes	unknown	0	0	0	0	10
P-0006847-T01-IM5	SOMATIC	PGR	PGR	11	11	58736058	100999333	IGR: 25Kb before GLYATL1(+)	Exon 1 of PGR(-)		GRCh37	INVERSION	75	14	PGR-intragenic	PRECISE	5to5	PGR (NM_000926) Rearrangement :  c.469_chr11:g.58736058inv	yes	unknown	42263275	213617	194179	0	14
P-0070017-T01-IM7	SOMATIC	PGR	PGR	11	11	81323382	100998307	IGR: 268Kb before LOC101928989(-)	Exon 1 of PGR(-)		GRCh37	DELETION	10	21	PGR-intragenic	PRECISE	3to5	PGR (NM_000926) rearrangement: c.1495:PGR_chr11:g.81323382del	yes	unknown	19674925	99210	97274	0	21
P-0032682-T01-IM6	SOMATIC	PGR		11	9	100999195	1442340	Exon 1 of PGR(-)	IGR: 392Kb before DMRT2(+)		GRCh37	TRANSLOCATION			PGR-intragenic	PRECISE	5to3	PGR (NM_000926) rearrangement: t(9;11)(p24.3;q22.1)(chr9:g.1442340::chr11:g.100999195)			0	0	0	0	81
P-0067938-T01-IM7	SOMATIC	PGR	PGR-AS1	11	11	100999010	101004603	Exon 1 of PGR(-)	5-UTR of LOC101054525(+):25Kb before coding start		GRCh37	INVERSION	10	16	Protein Fusion: mid-exon  {LOC101054525:PGR}	PRECISE	3to3	PGR (NM_000926) rearrangement: c.792:PGR_chr11:g.101004603inv	yes	unknown	5593	3844	3142	0	15
P-0072873-T01-IM7	SOMATIC	PHACTR2	CDK12	17	6	37627987	144027536	Exon 2 of CDK12(+)	Intron of PHACTR2(+):6Kb before exon 2		GRCh37	TRANSLOCATION	0	1001	Protein Fusion: mid-exon  {PHACTR2:CDK12}	IMPPRECISE	5to3	PHACTR2 (NM_001100164) - CDK12 (NM_016507) rearrangement: t(6;17)(q24.2;q12)(chr6:g.144027536::chr17:g.37627987)	yes	unknown	0	0	0	0	5159
P-0039732-T01-IM6	SOMATIC	PHF21A	IGF2	11	11	2156846	46045975	Intron of IGF2(-):87bp before exon 3	Intron of PHF21A(-):44Kb before exon 6		GRCh37	DELETION			Protein Fusion: in frame  {PHF21A:IGF2}	PRECISE	3to5	PHF21A (NM_001101802) - IGF2 (NM_001127598) rearrangement: c.154-44458:PHF21A_c.163-87:IGF2del			43889129	91982	114534	0	43
P-0028119-T01-IM6	SOMATIC	PHGDH	NOTCH2	1	1	120256472	120466557	Intron of PHGDH(+):2Kb after exon 1	Exon 26 of NOTCH2(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {PHGDH:NOTCH2}	PRECISE	3to3	PHGDH (NM_006623) - NOTCH2 (NM_024408) rearrangement: c.138+1689:PHGDH_c.4562:NOTCH2inv			210085	21068	236286	0	182
P-0058000-T01-IM6	SOMATIC	PHOX2B	BEND4	4	4	41750397	42164985	Exon 1 of PHOX2B(-)	IGR: 52Kb before BEND4(-)		GRCh37	INVERSION	10	14	PHOX2B-intragenic	PRECISE	5to5	PHOX2B (NM_003924) rearrangement: c.231:PHOX2B_chr4:g.42164985inv	yes	unknown	414588	3854	3168	0	19
P-0055667-T02-IM6	SOMATIC	PICALM	ALK								GRCh37				PICALM-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: PICALM-ALK fusion. Note: The rearrangement is an in-frame fusion between genes PICALM Exon19 (NM_007166) and ALK Exon20 (NM_004304).	yes	unknown					
P-0055667-T02-IM6	SOMATIC	PICALM	ALK	11	2	85681391	29446386	Intron of PICALM(-):4Kb after exon 19	Exon 20 of ALK(-)		GRCh37	TRANSLOCATION	10	169	Protein Fusion: mid-exon  {PICALM:ALK}	PRECISE	5to3	PICALM (NM_007166) - ALK (NM_004304) rearrangement: t(2;11)(p23.2;q14.2)(chr2:g.29446386::chr11:g.85681391)	yes	unknown	0	0	0	0	191
P-0040742-T01-IM6	SOMATIC	PIEZO1	ANKRD11	16	16	88840596	89348735	Intron of PIEZO1(-):11Kb after exon 1	Exon 9 of ANKRD11(-)		GRCh37	DUPLICATION	10	3	Protein Fusion: mid-exon  {PIEZO1:ANKRD11}	PRECISE	5to3	PIEZO1 (NM_001142864) - ANKRD11 (NM_013275) rearrangement: c.64+10713:PIEZO1_c.4215:ANKRD11dup	yes	unknown	508139	26858	20441	0	3
P-0065975-T01-IM7	SOMATIC	PIEZO1	FANCA	16	16	88850813	89806428	Intron of PIEZO1(-):495bp after exon 1	Exon 39 of FANCA(-)		GRCh37	DUPLICATION	10	33	Protein Fusion: mid-exon  {PIEZO1:FANCA}	PRECISE	5to3	PIEZO1 (NM_001142864) - FANCA (NM_000135) rearrangement: c.64+496:PIEZO1_c.3908:FANCAdup	yes	unknown	955615	52944	108815	0	34
P-0036876-T01-IM6	SOMATIC	PIEZO2	WHSC1L1	18	8	10849684	38153605	Intron of PIEZO2(-):6Kb after exon 7	Intron of WHSC1L1(-):135bp before exon 16		GRCh37	TRANSLOCATION	10	6	Protein Fusion: out of frame  {PIEZO2:WHSC1L1}	PRECISE	5to3	PIEZO2 (NM_022068) - WHSC1L1 (NM_023034) rearrangement: t(8;18)(p11.23;p11.21)(chr8:g.38153605::chr18:g.10849684)	yes	unknown	0	0	0	0	6
P-0059760-T01-IM7	SOMATIC	PIK3C2G	MAN1C1	12	1	18577194	26010210	Intron of PIK3C2G(+):221bp after exon 17	Intron of MAN1C1(+):3Kb before exon 2		GRCh37	TRANSLOCATION	10	8	Antisense Fusion	PRECISE	3to3	PIK3C2G (NM_004570) rearrangement: t(1;12)(p36.11;p12.3)(chr1:g.26010210::chr12:g.18577194)	yes	unknown	0	0	0	0	7
P-0043514-T01-IM6	SOMATIC	PIK3C2G	C2CD5	12	12	18719991	22631196	Exon 28 of PIK3C2G(+)	Intron of C2CD5(-):50bp after exon 15		GRCh37	DELETION	10	48	Antisense Fusion	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement: c.3888:PIK3C2G_chr12:g.22631196del	yes	unknown	3911205	22837	24312	0	48
P-0017365-T02-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18540068	18552482	Intron of PIK3C2G(+):4Kb before exon 14	Intron of PIK3C2G(+):110bp before exon 15		GRCh37	DELETION	10	10	Deletion of 1 exon : out of frame	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement: c.1873-3988_c.2004-111del	yes	unknown	12414	1721	1018	0	10
P-0069710-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18589200	18641654	Intron of PIK3C2G(+):12Kb after exon 17	Intron of PIK3C2G(+):91bp after exon 18		GRCh37	DUPLICATION	10	34	Duplication of 1 exon : out of frame	PRECISE	5to3	PIK3C2G (NM_004570) rearrangement: c.2381+12227_c.2562+91dup	yes	unknown	52454	1154	2983	0	34
P-0015148-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18716243	18738792	Intron of PIK3C2G(+): 68bp before exon 27	Intron of PIK3C2G(+): 9Kb before exon 29		GRCh37	DUPLICATION	28	23	Duplication of 2 exons: in frame	PRECISE	5to3	PIK3C2G (M_004570) rearrangement: c.3658-68_c.3889-8636dup	yes	unknown	22549	2844	5491	0	23
P-0011135-T01-IM5	SOMATIC	PIK3C2G	PIK3C2G	12	12	18747348	18757880	Intron of PIK3C2G(+): 80bp before exon 29	Intron of PIK3C2G(+): 5Kb before exon 30		GRCh37	INVERSION	23	31	PIK3C2G-intragenic	PRECISE	5to5	PIK3C2G (NM_004570) rearrangement : c.3889-80_3965-4589inv	yes	unknown	10532	1057	1710	0	30
P-0039365-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18195353	18641492	IGR: 38Kb before RERGL(-)	Exon 18 of PIK3C2G(+)		GRCh37	DELETION	10	47	PIK3C2G-intragenic	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement: c.2491:PIK3C2G_chr12:g.18195353del	yes	unknown	446139	25276	24632	0	50
P-0060042-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18515563	18800677	Intron of PIK3C2G(+):9Kb before exon 12	Intron of PIK3C2G(+):132bp before exon 32		GRCh37	INVERSION	10	38	PIK3C2G-intragenic	PRECISE	5to5	PIK3C2G (NM_004570) rearrangement: c.1626-8551_c.4186-133inv	yes	unknown	285114	25275	36027	0	39
P-0043562-T01-IM6	SOMATIC	PIK3C2G	SRGAP1	12	12	18800736	64258801	Intron of PIK3C2G(+):73bp before exon 32	Intron of SRGAP1(+):20Kb after exon 1		GRCh37	INVERSION	6	4	PIK3C2G-intragenic	PRECISE	5to5	PIK3C2G (NM_004570) rearrangement: c.4186-74:PIK3C2G_chr12:g.64258801inv	yes	unknown	45458065	376369	374130	0	5
P-0072078-T01-IM7	SOMATIC	PIK3C2G	KIAA1462	12	10	18644263	30367280	Intron of PIK3C2G(+):121bp before exon 19	IGR: 66Kb before KIAA1462(-)		GRCh37	TRANSLOCATION	0	6	PIK3C2G-intragenic	IMPPRECISE	5to5	PIK3C2G (NM_004570) rearrangement: t(10;12)(p11.23;p12.3)(chr10:g.30367280::chr12:g.18644263)	yes	unknown	0	0	0	0	6
P-0024649-T01-IM6	SOMATIC	PIK3C2G	ALG10	12	12	18691367	34715595	Intron of PIK3C2G(+):121bp after exon 24	IGR: 540Kb before ALG10(+)		GRCh37	INVERSION	10	12	PIK3C2G-intragenic	PRECISE	3to3	PIK3C2G (NM_004570) rearrangement: c.3357+121:PIK3C2G_chr12:g.34715595inv	yes	unknown	16024228	64843	50124	0	13
P-0006689-T01-IM5	SOMATIC	PIK3C2G		12	5	18552720	5556235	Exon 15 of PIK3C2G(+)	IGR: 133Kb before KIAA0947(+)		GRCh37	TRANSLOCATION			PIK3C2G-intragenic	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement : t(5;12)(p15.32;p12.3)(chr5:g.5556235::chr12:g.18552720)			0	0	0	0	33
P-0015102-T01-IM6	SOMATIC	PIK3C2G		12	12	16777242	18552462	IGR: 16Kb after LMO3(-)	Intron of PIK3C2G(+): 131bp before exon 15		GRCh37	DELETION			PIK3C2G-intragenic	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement: g.16777242_c.2004-131del			1775220	26930	26870	0	5
P-0020919-T01-IM6	SOMATIC	PIK3C2G		12	12	18534757	19682908	Exon 13 of PIK3C2G(+)	IGR: 89Kb before AEBP2(+)		GRCh37	DELETION			PIK3C2G-intragenic	PRECISE	3to5	PIK3C2G (NM_004570) rearrangement: c.1815:PIK3C2G_g.19682908:AEBP2del			1148151	35730	18617	0	2
P-0057488-T01-IM6	SOMATIC	PIK3C2G	GYS2	12	12	18715707	21711244	Exon 26 of PIK3C2G(+)	Exon 11 of GYS2(-)		GRCh37	INVERSION	10	31	Protein Fusion: mid-exon  {PIK3C2G:GYS2}	PRECISE	3to3	PIK3C2G (NM_004570) - GYS2 (NM_021957) rearrangement: c.3538:PIK3C2G_c.1312:GYS2inv	yes	unknown	2995537	29542	31899	0	31
P-0032490-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39550400	39616448	Exon 4 of PIK3C3(+)	Intron of PIK3C3(+):1Kb before exon 17		GRCh37	INVERSION	10	22	Antisense Fusion	PRECISE	3to3	PIK3C3 (NM_002647) Rearrangement : c.511_c.1840-1208inv	yes	unknown	66048	12377	4702	0	22
P-0057821-T01-IM6	SOMATIC	PIK3C3	CDH19	18	18	39623727	64146397	Exon 20 of PIK3C3(+)	IGR: 22Kb before CDH19(-)		GRCh37	DELETION	10	7	PIK3C3-intragenic	PRECISE	3to5	PIK3C3 (NM_002647) rearrangement: c.2134:PIK3C3_chr18:g.64146397del	yes	unknown	24522670	71331	83880	0	9
P-0045013-T01-IM6	SOMATIC	PIK3C3	LINC01876	18	2	39570511	156527970	Exon 6 of PIK3C3(+)	IGR: 349Kb before LOC101929378(-)		GRCh37	TRANSLOCATION	10	8	PIK3C3-intragenic	PRECISE	3to5	PIK3C3 (NM_002647) rearrangement: t(2;18)(q24.1;q12.3)(chr2:g.156527970::chr18:g.39570511)	yes	unknown	0	0	0	0	8
P-0070132-T02-IM7	SOMATIC	PIK3C3	PIK3C3	18	18	39500623	39550192	IGR: 35Kb before PIK3C3(+)	Intron of PIK3C3(+):98bp before exon 4		GRCh37	DELETION	9	4	PIK3C3-intragenic	PRECISE	3to5	PIK3C3 (NM_002647) rearrangement: c.402-99:PIK3C3_chr18:g.39500623del	yes	unknown	49569	4088	4702	0	4
P-0058457-T01-IM6	SOMATIC	PIK3C3	SLC35D4	18	18	20945317	39637821	Intron of TMEM241(-):280bp after exon 11	Intron of PIK3C3(+):25bp before exon 22		GRCh37	INVERSION	7	3	Protein Fusion: in frame  {PIK3C3:SLC35D4}	PRECISE	3to3	PIK3C3 (NM_002647) - TMEM241 (NM_032933) rearrangement: c.2264-26:PIK3C3_c.601+281:TMEM241inv	yes	unknown	18692504	25562	67709	0	3
P-0005985-T01-IM5	SOMATIC	PIK3CA	PIK3CA	3	3	178931769	178942517	Intron of PIK3CA(+): 3Kb after exon 9	Exon 16 of PIK3CA(+)		GRCh37	DELETION	33	21	Deletion within transcript: mid-exon	PRECISE	3to5	PIK3CA (NM_006218) rearrangement: c.1539+3416_c.2324del	yes	unknown	10748	5356	3277	0	19
P-0057556-T01-IM6	SOMATIC	PIK3CA	PIK3CA	3	3	178805729	178917485	IGR: 13Kb before LOC101928739(-)	Exon 3 of PIK3CA(+)		GRCh37	DELETION	6	4	PIK3CA-intragenic	PRECISE	3to5	PIK3CA (NM_006218) rearrangement: c.360:PIK3CA_chr3:g.178805729del	yes	unknown	111756	2243	2504	0	5
P-0077610-T01-IM7	SOMATIC	PIK3CA	EYS	6	3	65950871	178921681	Intron of EYS(-):55Kb after exon 12	Intron of PIK3CA(+):104bp after exon 5		GRCh37	TRANSLOCATION	10	24	Protein Fusion: out of frame  {PIK3CA:EYS}	PRECISE	3to3	PIK3CA (NM_006218) - EYS (NM_001142800) rearrangement: t(3;6)(q26.32;q12)(chr3:g.178921681::chr6:g.65950871)	yes	unknown	0	0	0	0	23
P-0063741-T02-IM7	SOMATIC	PIK3CA	GNB4	3	3	178917323	179155277	Intron of PIK3CA(+):154bp before exon 3	5-UTR of GNB4(-):36Kb before coding start		GRCh37	INVERSION	10	14	Transcript Fusion {GNB4:PIK3CA}	PRECISE	5to5	PIK3CA (NM_006218) rearrangement: c.353-155:PIK3CA_chr3:g.179155277inv	yes	unknown	237954	17436	28335	0	15
P-0077476-T01-IM7	SOMATIC	PIK3CB	PIK3CB	3	3	138376827	138415324	Intron of PIK3CB(-):150bp before exon 20	Intron of PIK3CB(-):2Kb before exon 12		GRCh37	DELETION	10	9	Deletion of 8 exons : in frame	PRECISE	3to5	PIK3CB (NM_006219) rearrangement: c.1771-1575_c.2797-150del	yes	unknown	38497	10511	7715	0	10
P-0045484-T03-IM6	SOMATIC	PIK3CB	PPM1L	3	3	138456596	160442290	Exon 4 of PIK3CB(-)	IGR: 32Kb before PPM1L(+)		GRCh37	DELETION	10	13	PIK3CB-intragenic	PRECISE	3to5	PIK3CB (NM_006219) rearrangement: c.754:PIK3CB_chr3:g.160442290del	yes	unknown	21985694	132171	140941	0	13
P-0055318-T01-IM6	SOMATIC	PIK3CB	PIK3CB	16	3	49519913	138376494	IGR: 5Kb before ZNF423(-)	Intron of PIK3CB(-):37bp after exon 20		GRCh37	TRANSLOCATION	10	22	PIK3CB-intragenic	PRECISE	5to5	PIK3CB (NM_006219) rearrangement: t(3;16)(q22.3;q12.1)(chr3:g.138376494::chr16:g.49519913)	yes	unknown	0	0	0	0	28
P-0070032-T01-IM7	SOMATIC	PIK3CB	PIK3CB	3	3	98010997	138426130	IGR: 9Kb before OR5H2(+)	Exon 9 of PIK3CB(-)		GRCh37	INVERSION	10	44	PIK3CB-intragenic	PRECISE	5to5	PIK3CB (NM_006219) rearrangement: c.1401:PIK3CB_chr3:g.98010997inv	yes	unknown	40415133	312379	272464	0	52
P-0067666-T01-IM7	SOMATIC	PIK3CB	PIK3CB	17	3	44152836	138417776	Intron of KANSL1(-):7Kb after exon 5	Exon 11 of PIK3CB(-)		GRCh37	TRANSLOCATION	0	8	Protein Fusion: mid-exon  {PIK3CB:KANSL1}	IMPPRECISE	3to5	PIK3CB (NM_006219) rearrangement: t(3;17)(q22.3;q21.31)(chr3:g.138417776::chr17:g.44152836)	yes	unknown	0	0	0	0	9
P-0030844-T01-IM6	SOMATIC	PIK3CD	MTOR	1	1	9782666	11228053	Intron of PIK3CD(+):2bp after exon 19	Intron of MTOR(-):479bp before exon 29		GRCh37	DELETION	10	14	Antisense Fusion	PRECISE	3to5	PIK3CD (NM_005026) - MTOR (NM_004958) Rearrangement: c.2426+2:PIK3CD_c.4254-479:MTORdel	yes	unknown	1445387	43599	41367	0	16
P-0012577-T01-IM5	SOMATIC	PIK3CD	PIK3CD	1	1	9780997	9782221	Intron of PIK3CD(+): 30bp after exon 13	Intron of PIK3CD(+): 10bp after exon 17		GRCh37	INVERSION	0	59	Antisense fusion	IMPRECISE	3to3	PIK3CD (NM_005026) rearrangement: c.1689+30_c.2234+10inv	yes	unknown	1224	8730	8778	0	54
P-0021342-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9780023	9780934	Exon 10 of PIK3CD(+)	Exon 13 of PIK3CD(+)		GRCh37	INVERSION	8	3	Antisense Fusion	PRECISE	3to3	PIK3CD (NM_005026) rearrangement: c.1287_c.1656inv	yes	unknown	911	7841	9232	0	3
P-0007098-T01-IM5	SOMATIC	PIK3CD		1	1	9786955	25533354	Intron of PIK3CD(+): 12bp before exon 24	IGR: 15Kb before SYF2(-)		GRCh37	INVERSION			PIK3CD-intragenic	PRECISE	5to5	PIK3CD (NM_005026) rearrangement : c.2998-12:PIK3CD_chr1:g.25533354inv			15746399	175978	204815	0	7
P-0040655-T01-IM6	SOMATIC	PIK3CG	CNTNAP2	7	7	106545779	147785722	Exon 11 of PIK3CG(+)	Intron of CNTNAP2(+):29Kb before exon 16		GRCh37	INVERSION	9	11	Antisense Fusion	PRECISE	3to3	PIK3CG (NM_002649) rearrangement: c.3256:PIK3CG_chr7:g.147785722inv	yes	unknown	41239943	201172	219030	0	10
P-0057856-T02-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	103542227	106524467	Intron of RELN(-):15Kb after exon 2	Intron of PIK3CG(+):132bp before exon 9		GRCh37	DELETION	7	5	PIK3CG-intragenic	PRECISE	3to5	PIK3CG (NM_002649) rearrangement: c.2761-133:PIK3CG_chr7:g.103542227del	yes	unknown	2982240	16830	19151	0	5
P-0041623-T01-IM6	SOMATIC	PIK3CG		20	7	19014680	106508538	IGR: 179Kb before SLC24A3(+)	Exon 2 of PIK3CG(+)		GRCh37	TRANSLOCATION			PIK3CG-intragenic	PRECISE	5to3	PIK3CG (NM_002649) rearrangement: t(7;20)(q22.3;p11.23)(chr7:g.106508538::chr20:g.19014680)			0	0	0	0	6
P-0067383-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	60804938	67589804	Intron of ZSWIM6(+):12Kb before exon 5	Intron of PIK3R1(+):142bp after exon 11		GRCh37	INVERSION	10	20	Antisense Fusion	PRECISE	3to3	PIK3R1 (NM_181523) rearrangement: c.1425+142:PIK3R1_chr5:g.60804938inv	yes	unknown	6784866	26696	26099	0	18
P-0047937-T01-IM6	SOMATIC	PIK3R1		6	5	76642727	67591383	Intron of IMPG1(-):2Kb before exon 15	Intron of PIK3R1(+):67bp after exon 14		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	PIK3R1 (NM_181523) rearrangement: t(5;6)(q13.1;q14.1)(chr5:g.67591383::chr6:g.76642727)			0	0	0	0	23
P-0012141-T01-IM5	SOMATIC	PIK3R1		5	5	67582583	67589535	Intron of PIK3R1(+): 6Kb before exon 7	Intron of PIK3R1(+): 2bp before exon 5		GRCh37	DELETION			Deletion of 2 exons: out of frame	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.917-5504_c.1300-2del			6952	5108	7337	0	16
P-0059230-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67591473	67599611	Intron of PIK3R1(+):157bp after exon 14	Promoter of PIK3R1(+):88Kb from tx start		GRCh37	DELETION	10	41	Deletion within transcript	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1814+157:PIK3R1_chr5:g.67599611del	yes	unknown	8138	4043	3031	0	48
P-0008429-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67585270	67591174	Intron of PIK3R1(+): 691bp after exon 1	Intron of PIK3R1(+): 22bp after exon 7		GRCh37	DUPLICATION	26	24	Duplication of 6 exons: out of frame	PRECISE	5to3	PIK3R1 (NM_181523) Rearrangement :  c.917-2817_1745+22dup	yes	unknown	5904	6517	4648	0	24
P-0073822-T01-IM7	SOMATIC	PIK3R1		5	5	67562534	67591100	Intron of PIK3R1(+):7Kb before exon 3	Exon 13 of PIK3R1(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	PIK3R1 (NM_181523) rearrangement: c.335-6684_c.1693dup			28566	12295	23300	0	54
P-0009602-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67590897	67591960	Intron of PIK3R1(+): 79bp before exon 7	Intron of PIK3R1(+): 39bp before exon 9		GRCh37	INVERSION	0	42	PIK3R1-intragenic	IMPRECISE	5to5	PIK3R1 (NM_181523) rearrangement: c.1569-79_c.1815-39inv	yes	unknown	1063	3435	4820	0	40
P-0009463-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67591217	67596244	Intron of PIK3R1(+): 31bp before exon 8	3-UTR of PIK3R1(+): 3Kb after coding stop		GRCh37	DELETION	9	6	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) Rearrangement :  c.1746-31_*2815del	yes	unknown	5027	5039	4287	0	6
P-0020793-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591324	67812667	Intron of PIK3R1(+):8bp after exon 14	IGR: 224Kb before PIK3R1(+)		GRCh37	DELETION	10	6	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1814+8_g.67812667del	yes	unknown	221343	2787	2257	0	6
P-0017533-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67589713	67593976	Intron of PIK3R1(+):51bp after exon 11	3-UTR of PIK3R1(+):71Kb after coding stop		GRCh37	DELETION	10	12	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) Rearrangement : c.1425+51_c.*547del	yes	unknown	4263	4594	8139	0	13
P-0038501-T01-IM6	SOMATIC	PIK3R1	PIK3R1	8	5	74337636	67591275	Intron of STAU2(-):3Kb before exon 14	Exon 14 of PIK3R1(+)		GRCh37	TRANSLOCATION	10	8	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: t(5;8)(q13.1;q21.11)(chr5:g.67591275::chr8:g.74337636)	yes	unknown	0	0	0	0	8
P-0038981-T01-IM6	SOMATIC	PIK3R1	PIK3R1	20	5	31923943	67588853	IGR: 23Kb before CDK5RAP1(-)	Intron of PIK3R1(+):75bp before exon 9		GRCh37	TRANSLOCATION	10	8	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: t(5;20)(q13.1;q11.21)(chr5:g.67588853::chr20:g.31923943)	yes	unknown	0	0	0	0	8
P-0039805-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67592256	67667228	Intron of PIK3R1(+):87bp after exon 15	IGR: 79Kb before PIK3R1(+)		GRCh37	INVERSION	10	19	PIK3R1-intragenic	PRECISE	3to3	PIK3R1 (NM_181523) rearrangement: c.1985+87:PIK3R1_chr5:g.67667228inv	yes	unknown	74972	1336	1503	0	19
P-0054236-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591151	67612137	Exon 13 of PIK3R1(+)	IGR: 24Kb before PIK3R1(+)		GRCh37	DELETION	10	28	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1744:PIK3R1_chr5:g.67612137del	yes	unknown	20986	2483	2139	0	28
P-0055712-T01-IM6	SOMATIC	PIK3R1	PAIP2	5	5	67591237	138673903	Intron of PIK3R1(+):10bp before exon 14	IGR: 4Kb before PAIP2(+)		GRCh37	INVERSION	10	19	PIK3R1-intragenic	PRECISE	5to5	PIK3R1 (NM_181523) rearrangement: c.1746-11:PIK3R1_chr5:g.138673903inv	yes	unknown	71082666	170071	203617	0	21
P-0057991-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67236102	67591133	IGR: 250Kb before LOC102467655(+)	Exon 13 of PIK3R1(+)		GRCh37	INVERSION	10	16	PIK3R1-intragenic	PRECISE	3to3	PIK3R1 (NM_181523) rearrangement: c.1726:PIK3R1_chr5:g.67236102inv	yes	unknown	355031	8280	13513	0	16
P-0059312-T01-IM7	SOMATIC	PIK3R1	LOC101929380	5	5	67576230	86496283	Intron of PIK3R1(+):125bp before exon 6	5-UTR of LOC101929380(+):48Kb before coding start		GRCh37	INVERSION	10	3	PIK3R1-intragenic	PRECISE	5to5	PIK3R1 (NM_181523) rearrangement: c.635-126:PIK3R1_chr5:g.86496283inv	yes	unknown	18920053	83749	100687	0	6
P-0049278-T01-IM7	SOMATIC	PIK3R1	PIK3R1	17	5	54888975	67591941	Intron of C17orf67(-):3Kb after exon 6	Intron of PIK3R1(+):57bp before exon 15		GRCh37	TRANSLOCATION	10	20	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: t(5;17)(q13.1;q22)(chr5:g.67591941::chr17:g.54888975)	yes	unknown	0	0	0	0	23
P-0070518-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67591386	67787178	Intron of PIK3R1(+):70bp after exon 14	IGR: 199Kb before PIK3R1(+)		GRCh37	DELETION	10	67	PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1814+70:PIK3R1_chr5:g.67787178del	yes	unknown	195792	4553	6099	0	72
P-0063078-T02-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67591630	67857519	Intron of PIK3R1(+):314bp after exon 14	IGR: 269Kb before PIK3R1(+)		GRCh37	INVERSION	8	8	PIK3R1-intragenic	PRECISE	3to3	PIK3R1 (NM_181523) rearrangement: c.1814+314:PIK3R1_chr5:g.67857519inv	yes	unknown	265889	3908	3693	0	7
P-0012142-T01-IM5	SOMATIC	PIK3R1		8	5	82618895	67589202	Intron of ZFAND1(-): 4Kb before exon 7	Exon 4 of PIK3R1(+)		GRCh37	TRANSLOCATION			PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: t(5;8)(q13.1;q21.13)(chr5:g.67589202::chr8:g.82618895)			0	0	0	0	32
P-0012603-T01-IM5	SOMATIC	PIK3R1		5	5	67592042	72437149	Exon 9 of PIK3R1(+)	IGR: 21Kb before TMEM171(+)		GRCh37	INVERSION			PIK3R1-intragenic	PRECISE	5to5	PIK3R1 (NM_181523) Rearrangement :  c.1858:PIK3R1_chr5:g.72437149inv			4845107	3976	5013	0	11
P-0012630-T01-IM5	SOMATIC	PIK3R1		5	5	67591142	143970832	Exon 7 of PIK3R1(+)	IGR: 420Kb before KCTD16(+)		GRCh37	INVERSION			PIK3R1-intragenic	PRECISE	3to3	PIK3R1 (NM_181523) Rearrangement : c.1735:PIK3R1_chr5:g.143970832inv			76379690	171777	221530	0	25
P-0014596-T01-IM6	SOMATIC	PIK3R1		5	5	66569460	67593184	IGR: 91Kb before CD180(-)	Intron of PIK3R1(+): 56bp before exon 10		GRCh37	INVERSION			PIK3R1-intragenic	PRECISE	5to5	PIK3R1 (NM_181523) rearrangement: c.1986-56_chr5:g.66569460inv			1023724	22146	26447	0	17
P-0015239-T01-IM6	SOMATIC	PIK3R1		6	5	158681004	67591907	IGR: 53Kb before TULP4(+)	Intron of PIK3R1(+): 92bp before exon 9		GRCh37	TRANSLOCATION			PIK3R1-intragenic	PRECISE	5to5	PIK3R1 (NM_181523) rearrangement: (5;6)(q13.1;q25.3)(chr5:g.67591907::chr6:g.158681004)			0	0	0	0	6
P-0033300-T01-IM6	SOMATIC	PIK3R1		5	5	67591142	72070476	Exon 13 of PIK3R1(+)	IGR: 42Kb before TNPO1(+)		GRCh37	DELETION			PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1735:PIK3R1_chr5:g.72070476del			4479334	3108	5205	0	5
P-0036261-T01-IM6	SOMATIC	PIK3R1		5	5	67591123	68233907	Exon 13 of PIK3R1(+)	IGR: 156Kb before SLC30A5(+)		GRCh37	DELETION			PIK3R1-intragenic	PRECISE	3to5	PIK3R1 (NM_181523) rearrangement: c.1716_chr5:g.5:68233907del			642784	2462	3250	0	14
P-0004704-T01-IM5	SOMATIC	PIK3R1	MUC	5	1	67591974	155160349	Intron of PIK3R1(+): 25bp before exon 9	Intron of MUC1(-): 15bp before exon 5		GRCh37	TRANSLOCATION			PIK3R1-MUC Fusion	IMPRECISE	5to3	PIK3R1 (NM_181523) - MUC (NM_001204287) rearrangement : t(1;5)(1q22;5q13.1)(chr1:g.155160349::chr5:g.67591974)			0	0	0	0	28
P-0081918-T01-IM7	SOMATIC	PIK3R1		5	1	67592170	20814484	Intron of PIK3R1(+):1bp after exon 15	Promoter of CAMK2N1(-):6Kb from tx start		GRCh37	TRANSLOCATION			Transcript Fusion {PIK3R1:CAMK2N1}	PRECISE	3to3	PIK3R1 (NM_181523) rearrangement: t(1;5)(p36.12;q13.1)(chr1:g.20814484::chr5:g.67592170)			0	0	0	0	23
P-0042035-T01-IM6	SOMATIC	PIK3R2	SSBP4	19	19	18279746	18529061	Intron of PIK3R2(+):40bp after exon 15	Promoter of SSBP4(+):1Kb from tx start		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	PIK3R2 (NM_005027) rearrangement: c.1979+40:PIK3R2_chr19:g.18529061inv	yes	unknown	249315	2108	2579	0	11
P-0050437-T01-IM6	SOMATIC	PIK3R2	UNC5D	19	8	18273183	35063141	Intron of PIK3R2(+):34bp before exon 9	IGR: 30Kb before UNC5D(+)		GRCh37	TRANSLOCATION	10	11	PIK3R2-intragenic	PRECISE	5to3	PIK3R2 (NM_005027) rearrangement: t(8;19)(p12;p13.11)(chr8:g.35063141::chr19:g.18273183)	yes	unknown	0	0	0	0	11
P-0057388-T02-IM6	SOMATIC	PIK3R2	ZNF486	19	19	18279802	20295084	Intron of PIK3R2(+):94bp before exon 16	Intron of ZNF486(+):80bp before exon 2		GRCh37	INVERSION	10	11	PIK3R2-intragenic	PRECISE	5to5	PIK3R2 (NM_005027) rearrangement: c.1980-95:PIK3R2_chr19:g.20295084inv	yes	unknown	2015282	103237	73507	0	13
P-0036893-T01-IM6	SOMATIC	PIK3R2		19	19	16219790	18274014	Promoter of RAB8A(+):3Kb from tx start	Intron of PIK3R2(+):57bp after exon 10		GRCh37	INVERSION			PIK3R2-intragenic	PRECISE	5to5	PIK3R2 (NM_005027) Rearrangement : c.1290+57:PIK3R2_c.-2922:RAB8Ainv			2054224	40142	36561	0	23
P-0064974-T01-IM7	SOMATIC	PIK3R2		19	14	18277130	81212808	Intron of PIK3R2(+):18bp after exon 12	Intron of CEP128(-):3Kb before exon 18		GRCh37	TRANSLOCATION			PIK3R2-intragenic	PRECISE	5to3	PIK3R2 (NM_005027) rearrangement: t(14;19)(q31.1;p13.11)(chr14:g.81212808::chr19:g.18277130)			0	0	0	0	9
P-0011321-T01-IM5	SOMATIC	PIK3R2	ZNF714	19	19	18273285	21282885	Exon 9 of PIK3R2(+)	Intron of ZNF714(+): 1Kb after exon 4		GRCh37	DELETION	39	45	Protein fusion: mid-exon (PIK3R2-ZNF714)	PRECISE	3to5	PIK3R2 (NM_005027) - ZNF714 (NM_18251) rearrangement: c.1078:PIK3R2_c.142+1169:ZNF714del	yes	unknown	3009600	39676	40593	0	33
P-0046974-T01-IM6	SOMATIC	PIK3R2	MRI1	19	19	13880962	18274231	Intron of MRI1(+):1Kb after exon 5	Intron of PIK3R2(+):33bp after exon 11		GRCh37	DUPLICATION	10	40	Protein Fusion: out of frame  {PIK3R2:MRI1}	PRECISE	5to3	PIK3R2 (NM_005027) - MRI1 (NM_001031727) rearrangement: c.1416+33:PIK3R2_c.949+1100:MRI1dup	yes	unknown	4393269	269589	448970	0	43
P-0069914-T01-IM7	SOMATIC	PIK3R2	ZNF536	19	19	18279764	30952728	Intron of PIK3R2(+):58bp after exon 15	Intron of ZNF536(+):16Kb after exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {PIK3R2:ZNF536}	PRECISE	3to5	PIK3R2 (NM_005027) - ZNF536 (NM_014717) rearrangement: c.1979+58:PIK3R2_c.2170+16089:ZNF536del	yes	unknown	12672964	136652	94062	0	11
P-0042612-T01-IM6	SOMATIC	PIK3R2	PIK3R2	20	19	25673697	18272932	5-UTR of ZNF337(-):18Kb before coding start	Intron of PIK3R2(+):71bp after exon 7		GRCh37	TRANSLOCATION	0	7	Transcript Fusion {PIK3R2:ZNF337}	IMPPRECISE	3to3	PIK3R2 (NM_005027) rearrangement: t(19;20)(p13.11;p11.1)(chr19:g.18272932::chr20:g.25673697)	yes	unknown	0	0	0	0	7
P-0037226-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46528920	46598399	Intron of PIK3R3(-):1Kb before exon 6	Promoter of PIK3R3(-):93Kb from tx start		GRCh37	DELETION	10	140	Deletion within transcript	PRECISE	3to5	PIK3R3 (NM_003629) rearrangement: c.622-1177:PIK3R3_chr1:g.46598399del	yes	unknown	69479	7899	7359	0	152
P-0033205-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46543204	46592321	Exon 3 of PIK3R3(-)	Intron of PIK3R3(-):5Kb after exon 1		GRCh37	DELETION	10	3	Deletion within transcript : mid-exon	PRECISE	3to5	PIK3R3 (NM_003629) rearrangement: c.106+5198_c.297del	yes	unknown	49117	1508	1388	0	3
P-0053554-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46521373	46538773	Intron of PIK3R3(-):93bp after exon 7	Intron of PIK3R3(-):4Kb after exon 3		GRCh37	DUPLICATION	10	21	Duplication of 4 exons : in frame	PRECISE	5to3	PIK3R3 (NM_003629) rearrangement: c.314+4414_c.941+94dup	yes	unknown	17400	2787	6841	0	23
P-0081578-T01-IM7	SOMATIC	PIK3R3		1	1	36116651	46532503	IGR: 52Kb before PSMB2(-)	Intron of PIK3R3(-):79bp after exon 4		GRCh37	DELETION			PIK3R3-intragenic	PRECISE	3to5	PIK3R3 (NM_003629) rearrangement: c.495+80:PIK3R3_chr1:g.36116651del			10415852	200286	228656	0	50
P-0020120-T01-IM6	SOMATIC	PIK3R3		1	1	46512414	56333264	Intron of PIK3R3(-):117bp before exon 8	IGR: 627Kb before PPAP2B(-)		GRCh37	INVERSION			PIK3R3-intragenic	PRECISE	3to3	PIK3R3 (NM_003629) rearrangement: c.942-117_g.56333264del			9820850	88995	109890	0	9
P-0024201-T01-IM6	SOMATIC	PIM1		6	6	37140468	37178326	Intron of PIM1(+):303bp before exon 5	Promoter of TMEM217(-):2Kb from tx start		GRCh37	DUPLICATION			PIM1-intragenic	PRECISE	5to3	PIM1 (NM_002648) rearrangement: c.608-304_chr6:g.37178326dup			37858	4769	6628	0	31
P-0053138-T01-IM6	SOMATIC	PIM1		6	2	37140471	201920381	Intron of PIM1(+):300bp before exon 5	5-UTR of FAM126B(-):74Kb before coding start		GRCh37	TRANSLOCATION			PIM1-intragenic	IMPPRECISE	5to3	PIM1 (NM_002648) rearrangement: t(2;6)(q33.1;p21.2)(chr2:g.201920381::chr6:g.37140471)			0	0	0	0	6
P-0064975-T01-IM7	SOMATIC	PITPNC1	PRKAR1A	17	17	65602905	66521791	Intron of PITPNC1(+):25Kb before exon 6	Intron of PRKAR1A(+):103bp before exon 7		GRCh37	DELETION	0	6	Protein Fusion: in frame  {PITPNC1:PRKAR1A}	IMPPRECISE	3to5	PITPNC1 (NM_012417) - PRKAR1A (NM_212471) rearrangement: c.367-25354:PITPNC1_c.550-104:PRKAR1Adel	yes	unknown	918886	12059	20743	0	6
P-0015414-T01-IM6	SOMATIC	PKD1	TRAF7	16	16	2158585	2225258	Exon 15 of PKD1(-)	Intron of TRAF7(+): 44bp before exon 16		GRCh37	DUPLICATION	13	9	Antisense fusion	PRECISE	5to3	TRAF7 (NM_032271) Rearrangement : c.6583:PKD1_c.1387-44:TRAF7dup	yes	unknown	66673	37157	42650	0	7
P-0060410-T01-IM7	SOMATIC	PKD1L1	APC	7	5	47865157	112175789	Intron of PKD1L1(-):2Kb after exon 45	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	10	44	Protein Fusion: mid-exon  {PKD1L1:APC}	PRECISE	5to5	PKD1L1 (NM_138295) - APC (NM_000038) rearrangement: t(5;7)(q22.2;p12.3)(chr5:g.112175789::chr7:g.47865157)	yes	unknown	0	0	0	0	56
P-0064027-T01-IM7	SOMATIC	PKD1L1	FBXW7	7	4	47865192	153245400	Intron of PKD1L1(-):2Kb after exon 45	Exon 11 of FBXW7(-)		GRCh37	TRANSLOCATION	10	17	Protein Fusion: mid-exon  {PKD1L1:FBXW7}	PRECISE	5to3	PKD1L1 (NM_138295) - FBXW7 (NM_033632) rearrangement: t(4;7)(q31.3;p12.3)(chr4:g.153245400::chr7:g.47865192)	yes	unknown	0	0	0	0	18
P-0056930-T01-IM6	SOMATIC	PLCB3	NRG1								GRCh37				PLCB3-NRG1 Fusion - Archer			Please See results from M20-25854.	yes	unknown					
P-0021282-T01-IM6	SOMATIC	PLCD3	TMPRSS2	21	17	42843839	43207457	Exon 10 of TMPRSS2(-)	Intron of PLCD3(-):2Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {PLCD3:TMPRSS2}	PRECISE	3to5	PLCD3 (NM_133373) - TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.43207457::chr21:g.42843839)			0	0	0	0	10
P-0050471-T01-IM6	SOMATIC	PLCG2	PLCG2	21	16	26566180	81927563	IGR: 192Kb before LINC00158(-)	Intron of PLCG2(+):164bp after exon 12		GRCh37	TRANSLOCATION			PLCG2-intragenic	PRECISE	5to3	PLCG2 (NM_002661) rearrangement: t(16;21)(q23.3;q21.2)(chr16:g.81927563::chr21:g.26566180)	yes	unknown	0	0	0		
P-0009699-T01-IM5	SOMATIC	PLCG2		16	5	81934177	103163734	Intron of PLCG2(+): 40bp before exon 14	IGR: 279Kb before NUDT12(-)		GRCh37	TRANSLOCATION			PLCG2-intragenic	IMPRECISE	5to3	PLCG2 (NM_002661) Rearrangement : t(5;16)(q21.1;q23.3)(chr5:g.103163734::chr16:g. 81934177)			0	0	0	0	21
P-0053170-T01-IM6	SOMATIC	PLCG2	LIMK2	22	16	31625396	81946475	Intron of LIMK2(+):4Kb after exon 2	Intron of PLCG2(+):154bp after exon 19		GRCh37	TRANSLOCATION	10	26	Protein Fusion: in frame  {PLCG2:LIMK2}	PRECISE	5to3	PLCG2 (NM_002661) - LIMK2 (NM_005569) rearrangement: t(16;22)(q23.3;q12.2)(chr16:g.81946475::chr22:g.31625396)	yes	unknown	0	0	0	0	27
P-0015240-T01-IM6	SOMATIC	PLCG2	EIF4G1	16	3	81968167	184034134	Intron of PLCG2(+): 31bp after exon 26	Intron of EIF4G1(+): 128bp after exon 4		GRCh37	TRANSLOCATION	21	27	Protein fusion: out of frame (PLCG2-EIF4G1)	PRECISE	3to5	PLCG2 (NM_002661) rearrangement: t(3;16)(q27.1;q23.3)(chr3:g.184034134::chr16:g.81968167)	yes	unknown	0	0	0	0	27
P-0011376-T01-IM5	SOMATIC	PLCXD2	GATA2	3	3	111421357	128200195	Intron of PLCXD2(+): 5Kb before exon 2	Intron of GATA2(-): 34bp before exon 6		GRCh37	INVERSION	17	10	Protein fusion: out of frame (PLCXD2-GATA2)	PRECISE	3to3	PLCXD2 (NM_153268) -GATA2(NM_032638) Rearrangement :  c.164-5416:PLCXD2 _c.1144-34:GATA2inv	yes	unknown	16778838	37971	60432	0	9
P-0070642-T01-IM7	SOMATIC	PLEKHA6	NTRK1	1	1	156843550	204196998	Exon 8 of NTRK1(+)	Intron of PLEKHA6(-):212bp after exon 21		GRCh37	INVERSION	10	22	Protein Fusion: mid-exon  {PLEKHA6:NTRK1}	PRECISE	5to5	PLEKHA6 (NM_014935) - NTRK1 (NM_002529) fusion: c.3031+213:PLEKHA6_c.976:NTRK1inv	yes	unknown	47353448	268075	363769	0	24
P-0054253-T01-IM6	SOMATIC	PLEKHA7	ALK	11	2	16813809	29448396	Intron of PLEKHA7(-):1Kb before exon 20	Exon 19 of ALK(-)		GRCh37	TRANSLOCATION	10	74	Protein Fusion: mid-exon  {PLEKHA7:ALK}	PRECISE	5to3	PLEKHA7 (NM_175058) - ALK (NM_004304) fusion: t(2;11)(p23.2;p15.1)(chr2:g.29448396::chr11:g.16813809)	yes	unknown	0	0	0	0	76
P-0037180-T01-IM6	SOMATIC	PLEKHA7	RPS6KA4	11	11	16948616	64128995	Intron of PLEKHA7(-):56Kb before exon 4	Exon 6 of RPS6KA4(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {PLEKHA7:RPS6KA4}	IMPPRECISE	5to5	PLEKHA7 (NM_175058) - RPS6KA4 (NM_003942) rearrangement: c.222-55887:PLEKHA7_c.625:RPS6KA4inv			47180379	94435	109164	0	7
P-0042346-T01-IM6	SOMATIC	PLEKHM3	SF3B1	2	2	198283493	208708541	Intron of SF3B1(-):181bp before exon 5	Intron of PLEKHM3(-):15Kb before exon 8		GRCh37	DELETION	10	15	Protein Fusion: out of frame  {PLEKHM3:SF3B1}	PRECISE	3to5	PLEKHM3 (NM_001080475) - SF3B1 (NM_012433) rearrangement: c.2109-15321:PLEKHM3_c.416-181:SF3B1del	yes	unknown	10425048	28180	31400	0	18
P-0004835-T01-IM5	SOMATIC	PLEKHO2	MAP2K1	15	15	65136002	66782890	Intron of PLEKHO2(+): 2Kb after exon 1	Exon 11 of MAP2K1(+)		GRCh37	DUPLICATION	25	18	Protein fusion: mid-exon (MAP2K1-PLEKHO2)	PRECISE	5to3	MAP2K1 (NM_002755) - PLEKHO2 (NM_025201) rearrangement : c.1119:MAP2K1_c.12+1775:PLEKHO2dup	yes	unknown	1646888	23177	22897	0	17
P-0048660-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57749444	57753102	Promoter of PLK2(-):365bp from tx start	Exon 7 of PLK2(-)		GRCh37	DELETION	10	32	Deletion within transcript : mid-exon	PRECISE	3to5	PLK2 (NM_006622) rearrangement: c.914:PLK2_chr5:g.57749444del	yes	unknown	3658	7385	10707	0	35
P-0046974-T01-IM6	SOMATIC	PLK2	YTHDC2	5	5	57752983	113215171	Intron of PLK2(-):24bp after exon 7	IGR: 366Kb before YTHDC2(+)		GRCh37	INVERSION	10	28	PLK2-intragenic	PRECISE	3to3	PLK2 (NM_006622) rearrangement: c.1008+25:PLK2_chr5:g.113215171inv	yes	unknown	55462188	133811	156942	0	31
P-0075995-T01-IM7	SOMATIC	PLK2	PLK2	8	5	135340275	57752169	IGR: 150Kb before ZFAT(-)	Intron of PLK2(-):149bp after exon 9		GRCh37	TRANSLOCATION	10	18	PLK2-intragenic	PRECISE	3to3	PLK2 (NM_006622) rearrangement: t(5;8)(q11.2;q24.22)(chr5:g.57752169::chr8:g.135340275)	yes	unknown	0	0	0	0	18
P-0016181-T02-IM6	SOMATIC	PLK2		13	5	30247920	57754385	IGR: 91Kb before UBL3(-)	Intron of PLK2(-):30bp before exon 4		GRCh37	TRANSLOCATION			PLK2-intragenic	PRECISE	3to3	PLK2 (NM_006622) rearrangement: t(5;13)(q11.2;q12.3)(chr5:g.57754385::chr13:g.30247920)			0	0	0	0	30
P-0030617-T01-IM6	SOMATIC	PLK2		5	5	57749990	57752679	3-UTR of PLK2(-):419bp after coding stop	Intron of PLK2(-):92bp after exon 8		GRCh37	DELETION			PLK2-intragenic	PRECISE	3to5	PLK2 (NM_006622) Rearrangement: c.*420_c.1156+93del			2689	5794	5565	0	17
P-0033492-T01-IM6	SOMATIC	PLK2		5	5	57364816	57753183	IGR: 39Kb before LOC101928569(-)	Exon 7 of PLK2(-)		GRCh37	DUPLICATION			PLK2-intragenic	PRECISE	5to3	PLK2 (NM_006622) rearrangement: c.833:PLK2_chr5:g.57364816dup			388367	9562	13186	0	10
P-0034296-T01-IM6	SOMATIC	PLK2		5	5	57189065	57753920	3-UTR of LOC101928539(-):6Kb after coding stop	Exon 5 of PLK2(-)		GRCh37	DELETION			PLK2-intragenic	PRECISE	3to5	PLK2 (NM_006622) rearrangement: c.704:PLK2_chr5:g.57189065del			564855	11858	4314	0	23
P-0072662-T01-IM7	SOMATIC	PLK2		5	5	57750776	57753344	Exon 13 of PLK2(-)	Exon 6 of PLK2(-)		GRCh37	INVERSION			PLK2-intragenic	PRECISE	3to3	PLK2 (NM_006622) rearrangement: c.780_c.1828inv			2568	10377	8351	0	26
P-0032779-T01-IM6	SOMATIC	PLK2	MYO15A	17	5	18037660	57752959	Intron of MYO15A(+):960bp after exon 11	Intron of PLK2(-):40bp before exon 8		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {PLK2:MYO15A}	PRECISE	5to5	PLK2 (NM_006622) -MYO15A (NM_016239) Rearrangement :  t(5;17)(q11.2;p11.2)(chr5:g.57752959::chr17:g.18037660)			0	0	0	0	8
P-0005216-T01-IM5	SOMATIC	PLK2	PDE4D	5	5	57754794	58851962	Intron of PLK2(-): 18bp after exon 2	Intron of PDE4D(-): 30Kb after exon 1		GRCh37	DUPLICATION	63	87	Protein fusion: out of frame (PLK2-PDE4D)	PRECISE	5to3	PLK2 (NM_006622) - PDE4D (NM_001104631) Rearrangement: c.378+18_c.455+337033dup	yes	unknown	1097168	5522	9135	0	86
P-0059032-T01-IM7	SOMATIC	PLOD3	EGFR	7	7	55179084	100849726	Intron of EGFR(+):31Kb before exon 2	Intron of PLOD3(-):9bp before exon 19		GRCh37	INVERSION	0	5	Protein Fusion: out of frame  {PLOD3:EGFR}	IMPPRECISE	5to5	PLOD3 (NM_001084) - EGFR (NM_005228) fusion: c.2062-9:PLOD3_c.89-30895:EGFRinv	yes	unknown	45670642	347447	499725	0	5
P-0025335-T01-IM6	SOMATIC	PLXDC1	AXIN2	17	17	37267041	63554239	Intron of PLXDC1(-):1Kb before exon 3	Exon 2 of AXIN2(-)		GRCh37	DUPLICATION	10	16	Protein Fusion: mid-exon  {PLXDC1:AXIN2}	PRECISE	5to3	PLXDC1 (NM_020405) - AXIN2 (NM_004655) rearrangement: c.256-1397:PLXDC1_c.500:AXIN2dup	yes	unknown	26287198	334628	569433	0	16
P-0077695-T01-IM7	SOMATIC	PLXDC1	ERBB2	17	17	37241372	37873241	Intron of PLXDC1(-):2Kb before exon 9	Intron of ERBB2(+):331bp before exon 15		GRCh37	INVERSION	10	5	Protein Fusion: out of frame  {PLXDC1:ERBB2}	PRECISE	5to5	PLXDC1 (NM_020405) - ERBB2 (NM_004448) fusion: c.908-1579:PLXDC1_c.1738-332:ERBB2inv	yes	unknown	631869	62205	675633	0	6
P-0032859-T02-IM6	SOMATIC	PMS1	PMS1	2	2	190732652	190738219	Exon 11 of PMS1(+)	Intron of PMS1(+):2bp before exon 12		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	PMS1 (NM_000534) rearrangement: c.2470_c.2474-3del	yes	unknown	5567	500	544	0	17
P-0048696-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190723155	190732689	Intron of PMS1(+):3Kb after exon 9	Intron of PMS1(+):34bp after exon 11		GRCh37	DUPLICATION	10	15	Duplication of 2 exons : out of frame	PRECISE	5to3	PMS1 (NM_000534) rearrangement: c.1856+3301_c.2473+34dup	yes	unknown	9534	2919	4180	0	15
P-0035003-T01-IM6	SOMATIC	PMS1		2	2	190670379	190675541	Exon 4 of PMS1(+)	Intron of PMS1(+):5Kb after exon 4		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	PMS1 (NM_000534)  rearrangement: c.317_c.418+5061dup			5162	648	1280	0	36
P-0040225-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190711829	190728739	Intron of PMS1(+):3Kb after exon 6	Exon 10 of PMS1(+)		GRCh37	INVERSION	0	5	PMS1-intragenic	IMPPRECISE	5to5	PMS1 (NM_000534) rearrangement: c.699+3023_c.2127inv	yes	unknown	16910	5270	7641	0	5
P-0012513-T01-IM5	SOMATIC	PMS1		2	2	183973880	190708775	IGR: 15Kb before NUP35(+)	Exon 6 of PMS1(+)		GRCh37	INVERSION			PMS1-intragenic	PRECISE	3to3	PMS1 (NM_000534) rearrangement: chr2:g.183973880_c.668:PMS1del			6734895	9423	13176	0	6
P-0060704-T02-IM7	SOMATIC	PMS2	PMS2CL	7	7	6017844	6786203	Intron of PMS2(-):382bp after exon 13	5-UTR of PMS2CL(+):5Kb before coding start		GRCh37	INVERSION	10	5	Transcript Fusion {PMS2CL:PMS2}	PRECISE	3to3	PMS2 (NM_000535) rearrangement: c.2275+383:PMS2_chr7:g.6786203inv	yes	unknown	768359	40103	105645	2	24
P-0034385-T01-IM6	SOMATIC	PNPLA7	EGFL7	9	9	139564191	140375889	Intron of EGFL7(+):18bp after exon 4	Intron of PNPLA7(-):414bp before exon 22		GRCh37	INVERSION			Protein Fusion: in frame  {PNPLA7:EGFL7}	PRECISE	5to5	PNPLA7 (NM_001098537) - EGFL7 (NM_201446) rearrangement: c.2348-414:PNPLA7_c.313+18:EGFL7inv			811698	27723	45862	0	3
P-0046026-T01-IM6	SOMATIC	PNRC1	PNRC1	6	6	89780366	89792274	IGR: 10Kb before PNRC1(+)	Intron of PNRC1(+):1Kb after exon 1		GRCh37	DELETION	8	2	PNRC1-intragenic	PRECISE	3to5	PNRC1 (NM_006813) rearrangement: c.540+1121:PNRC1_chr6:g.89780366del	yes	unknown	11908	5475	6710	0	2
P-0043277-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50186003	50902192	Intron of PRMT1(+):487bp after exon 4	Exon 2 of POLD1(+)		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	3to3	POLD1 (NM_002691) rearrangement: c.84:POLD1_chr19:g.50186003inv	yes	unknown	716189	1365	1895	0	49
P-0076400-T01-IM7	SOMATIC	POLD1	POLD1	19	19	41098502	50920683	Promoter of LTBP4(+):569bp from tx start	Intron of POLD1(+):157bp after exon 26		GRCh37	INVERSION	10	9	Antisense Fusion	PRECISE	3to3	POLD1 (NM_002691) rearrangement: c.3218+157:POLD1_chr19:g.41098502inv	yes	unknown	9822181	225899	258504	0	9
P-0007749-T01-IM5	SOMATIC	POLD1	POLD1	19	19	50902379	50905197	Intron of POLD1(+): 69bp after exon 2	Intron of POLD1(+): 16bp after exon 4		GRCh37	DUPLICATION	68	56	Duplication of 2 exons: in frame	PRECISE	5to3	POLD1 (NM_002691) rearrangement:  c.202+69_c.463+16dup	yes	unknown	2818	6408	6735	0	56
P-0029604-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50909783	50912353	Intron of POLD1(+):9bp after exon 12	Intron of POLD1(+):25bp before exon 16		GRCh37	INVERSION	6	2	POLD1-intragenic	PRECISE	5to5	POLD1 (NM_002691) rearrangement: c.1494+9_c.1893-26inv	yes	unknown	2570	5640	12089	0	2
P-0057114-T01-IM6	SOMATIC	POLD1	CAMTA1	19	1	50918915	7395199	Intron of POLD1(+):65bp before exon 22	Intron of CAMTA1(+):86Kb after exon 5		GRCh37	TRANSLOCATION	0	5	POLD1-intragenic	IMPPRECISE	5to5	POLD1 (NM_002691) rearrangement: t(1;19)(p36.23;q13.33)(chr1:g.7395199::chr19:g.50918915)	yes	unknown	0	0	0	2	9
P-0077438-T01-IM7	SOMATIC	POLD1	POLD1	19	19	50905083	50906026	Exon 4 of POLD1(+)	Intron of POLD1(+):28bp after exon 8		GRCh37	INVERSION	10	35	POLD1-intragenic	PRECISE	5to5	POLD1 (NM_002691) rearrangement: c.365_c.970+28inv	yes	unknown	943	6927	8140	0	39
P-0020165-T01-IM6	SOMATIC	POLD1		19	19	37555008	50910276	IGR: 14Kb before ZNF420(+)	Exon 13 of POLD1(+)		GRCh37	DUPLICATION			POLD1-intragenic	PRECISE	5to3	POLD1 (NM_002691) rearrangement: chr19:g.37555008_c.1531dup			13355268	255065	391977	0	34
P-0016377-T01-IM6	SOMATIC	POLD1	NDUFA3	19	19	50905302	54607080	Exon 5 of POLD1(+)	Intron of NDUFA3(+):584bp after exon 2		GRCh37	DUPLICATION	10	3	Protein Fusion: mid-exon  {NDUFA3:POLD1}	PRECISE	5to3	NDUFA3 (NM_004542) - POLD1 (NM_002691) rearrangement: c.85+584:NDUFA3_c.510:POLD1dup	yes	unknown	3701778	70226	78188	0	5
P-0063368-T01-IM7	SOMATIC	POLD1	GAU1	19	12	50912455	4809173	Exon 16 of POLD1(+)	Promoter of LOC101929549(-):409bp from tx start		GRCh37	TRANSLOCATION	10	12	Protein Fusion: mid-exon  {POLD1:LOC101929549}	PRECISE	3to3	POLD1 (NM_002691) rearrangement: t(12;19)(p13.32;q13.33)(chr12:g.4809173::chr19:g.50912455)	yes	unknown	0	0	0	0	12
P-0023588-T01-IM6	SOMATIC	POLD1	SIGLECL1	19	19	50918112	51762823	Exon 20 of POLD1(+)	5-UTR of SIGLECL1(+):10Kb before coding start		GRCh37	DELETION			Protein Fusion: mid-exon  {POLD1:SIGLECL1}	PRECISE	3to5	POLD1 (NM_002691) - SIGLECL1(NM_173635) Rearrangement : c.2429:POLD1_c.-191+1669:SIGLECL1del			844711	17739	9213	0	29
P-0030745-T01-IM6	SOMATIC	POLE	LINC01606	12	8	133256566	58136160	Exon 5 of POLE(-)	5-UTR of LOC100507651(+):9Kb before coding start		GRCh37	TRANSLOCATION	0	19	Antisense Fusion	IMPPRECISE	5to3	POLE (NM_006231) rearrangement: t(8;12)(q12.1;q24.33)(chr8:g.58136160::chr12:g.133256566)	yes	unknown	0	0	0	0	19
P-0005070-T01-IM5	SOMATIC	POLE	POLE	12	12	133201823	133219398	Intron of POLE(-): 243bp before exon 48	Intron of POLE(-): 8bp after exon 36		GRCh37	INVERSION	56	25	Antisense fusion	PRECISE	5to5	POLE (NM_006231)  Rearrangement:  c.6658-243_4728+8inv	yes	unknown	17575	22740	18040	0	26
P-0054311-T01-IM6	SOMATIC	POLE	KCNQ1	12	11	133245250	2515266	Exon 18 of POLE(-)	Intron of KCNQ1(+):34Kb before exon 2		GRCh37	TRANSLOCATION	10	18	Antisense Fusion	PRECISE	5to3	POLE (NM_006231) rearrangement: t(11;12)(p15.5;q24.33)(chr11:g.2515266::chr12:g.133245250)	yes	unknown	0	0	0	0	26
P-0059191-T01-IM7	SOMATIC	POLE	CDC123	12	10	133253931	12239955	Intron of POLE(-):17bp after exon 8	Intron of CDC123(+):748bp before exon 2		GRCh37	TRANSLOCATION	10	37	Antisense Fusion	PRECISE	5to3	POLE (NM_006231) rearrangement: t(10;12)(p13;q24.33)(chr10:g.12239955::chr12:g.133253931)	yes	unknown	0	0	0	0	37
P-0068481-T01-IM7	SOMATIC	POLE	PHYHD1	12	9	133256742	131699307	Intron of POLE(-):21bp after exon 4	Intron of PHYHD1(+):525bp after exon 5		GRCh37	TRANSLOCATION	10	27	Antisense Fusion	PRECISE	5to3	POLE (NM_006231) rearrangement: t(9;12)(q34.11;q24.33)(chr9:g.131699307::chr12:g.133256742)	yes	unknown	0	0	0	0	34
P-0046289-T01-IM6	SOMATIC	POLE	POLE	12	12	133228774	133249056	Intron of POLE(-):2Kb before exon 30	Intron of POLE(-):148bp before exon 16		GRCh37	DELETION	10	4	Deletion of 14 exons : in frame	PRECISE	3to5	POLE (NM_006231) rearrangement: c.1687-148_c.3583-2299del	yes	unknown	20282	21935	23378	0	4
P-0065060-T01-IM7	SOMATIC	POLE	POLE	12	12	133202445	133209895	Intron of POLE(-):89bp before exon 47	Intron of POLE(-):514bp before exon 44		GRCh37	DELETION	10	19	Deletion of 3 exons : out of frame	PRECISE	3to5	POLE (NM_006231) rearrangement: c.6005-514_c.6532-89del	yes	unknown	7450	9484	8376	0	22
P-0025980-T01-IM6	SOMATIC	POLE	POLE	12	12	133216982	133244941	Intron of POLE(-):1Kb before exon 40	Exon 19 of POLE(-)		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	POLE (NM_006231) Rearrangement :  c.2173+1_c.5379-1098del	yes	unknown	27959	32545	48510	0	17
P-0020365-T01-IM6	SOMATIC	POLE	POLE	12	12	133235918	133238245	Exon 26 of POLE(-)	Exon 24 of POLE(-)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	POLE (NM_006231) rearrangement: c.3238_c.2732del	yes	unknown	2327	5756	4253	0	18
P-0005518-T01-IM5	SOMATIC	POLE	POLE	12	12	133226407	133227215	Exon 30 of POLE(-)	Intron of POLE(-): 740bp before exon 30		GRCh37	DELETION	12	17	Deletion within transcript: mid-exon	PRECISE	3to5	POLE (NM_006231) Rearrangement :  c.3651_3583-740del	yes	unknown	808	620	708	0	15
P-0077061-T01-IM7	SOMATIC	POLE	POLE	12	12	133222104	133236234	Intron of POLE(-):2Kb before exon 33	Intron of POLE(-):139bp before exon 26		GRCh37	DUPLICATION	10	10	Duplication of 7 exons : in frame	PRECISE	5to3	POLE (NM_006231) rearrangement: c.3061-139_c.4150-1541dup	yes	unknown	14130	11951	18069	0	10
P-0009240-T01-IM5	SOMATIC	POLE	POLE	12	12	133219568	133222901	Exon 36 of POLE(-)	Intron of POLE(-): 2Kb before exon 33		GRCh37	DUPLICATION	24	10	Duplication within transcript: mid-exon	PRECISE	5to3	POLE (NM_006231) rearrangement: c.4150-2338_c.4566dup	yes	unknown	3333	6415	8187	0	8
P-0039306-T01-IM6	SOMATIC	POLE	POLE	12	12	76693286	133237771	IGR: 45Kb before BBS10(-)	Intron of POLE(-):21bp before exon 25		GRCh37	INVERSION	0	19	POLE-intragenic	IMPPRECISE	3to3	POLE (NM_006231) rearrangement: c.2865-21:POLE_chr12:g.76693286inv	yes	unknown	56544485	163857	222078	0	19
P-0059459-T01-IM7	SOMATIC	POLE	POLE	12	12	132024231	133257792	IGR: 171Kb before SFSWAP(+)	Exon 2 of POLE(-)		GRCh37	INVERSION	10	5	POLE-intragenic	PRECISE	3to3	POLE (NM_006231) rearrangement: c.136:POLE_chr12:g.132024231inv	yes	unknown	1233561	98191	137998	0	5
P-0074717-T01-IM7	SOMATIC	POLE	AJAP1	12	1	133249265	4926239	Exon 15 of POLE(-)	IGR: 211Kb before AJAP1(+)		GRCh37	TRANSLOCATION	0	5	POLE-intragenic	IMPPRECISE	3to3	POLE (NM_006231) rearrangement: t(1;12)(p36.32;q24.33)(chr1:g.4926239::chr12:g.133249265)	yes	unknown	0	0	0	0	8
P-0069850-T01-IM7	SOMATIC	POLE	POLE	20	12	21950141	133256944	IGR: 85Kb before LINC01432(+)	Intron of POLE(-):136bp before exon 4		GRCh37	TRANSLOCATION	0	21	POLE-intragenic	IMPPRECISE	5to3	POLE (NM_006231) rearrangement: t(12;20)(q24.33;p11.22)(chr12:g.133256944::chr20:g.21950141)	yes	unknown	0	0	0	0	21
P-0005567-T01-IM5	SOMATIC	POLE		12	12	61019594	133201301	IGR: 936Kb before SLC16A7(+)	Exon 49 of POLE(-)		GRCh37	INVERSION			POLE-intragenic	PRECISE	5to5	POLE (NM_006231) Rearrangement :  c.6843:POLE_chr12:g.61019594inv			72181707	202479	203028	0	32
P-0014235-T01-IM6	SOMATIC	POLE		12	12	126611209	133244213	IGR: 316Kb before LOC100128554(+)	Exon 20 of POLE(-)		GRCh37	DUPLICATION			POLE-intragenic	PRECISE	5to3	POLE (NM_006231) rearrangement: c.2195_chr12:g.126611209dup			6633004	82336	73888	0	20
P-0014597-T01-IM6	SOMATIC	POLE		12	12	128237816	133250299	IGR: 514Kb before TMEM132C(+)	Intron of POLE(-): 6bp before exon 13		GRCh37	INVERSION			POLE-intragenic	PRECISE	3to3	POLE (NM_006231) rearrangement: chr12:g.128237816_c.1227-6:POLEinv			5012483	84719	74859	0	12
P-0016910-T01-IM6	SOMATIC	POLE		12	12	132997799	133225532	IGR: 69Kb before FBRSL1(+)	Exon 32 of POLE(-)		GRCh37	INVERSION			POLE-intragenic	PRECISE	3to3	POLE (NM_006231) rearrangement: c.4132:POLE_chr12:g.132997799inv			227733	20461	45604	0	61
P-0018668-T01-IM6	SOMATIC	POLE		22	12	31791989	133257281	IGR: 4Kb before DRG1(+)	Intron of POLE(-):8bp before exon 3		GRCh37	TRANSLOCATION			POLE-intragenic	PRECISE	5to3	POLE (NM_006231) rearrangement: t(12;22)(q24.33;q12.2)(chr12:g.133257281::chr22:g.31791989)			0	0	0	0	39
P-0020078-T01-IM6	SOMATIC	POLE		12	12	131945557	133253906	IGR: 114Kb before LOC338797(+)	Intron of POLE(-):42bp after exon 8		GRCh37	DELETION			POLE-intragenic	PRECISE	3to5	POLE (NM_006231) rearrangement: chr12:g.131945557_c.801+43del			1308349	65160	67816	0	78
P-0032607-T01-IM6	SOMATIC	POLE		12	12	133240846	133288592	Intron of POLE(-):109bp after exon 22	Intron of PGAM5(+):939bp after exon 1		GRCh37	DELETION			POLE-intragenic	PRECISE	3to5	POLE (NM_006231) rearrangement: c.2561+110:POLE_chr12:g.133288592del			47746	32624	15819	0	11
P-0032721-T01-IM6	SOMATIC	POLE		12	12	133117647	133249816	Intron of FBRSL1(+):7Kb before exon 5	Exon 14 of POLE(-)		GRCh37	DUPLICATION			POLE-intragenic	PRECISE	5to3	POLE (NM_006231) rearrangement: chr12:g/133117647_c.1407:POLEdup			132169	49346	89694	0	32
P-0037903-T01-IM6	SOMATIC	POLE		12	2	133243918	103227722	Intron of POLE(-):170bp after exon 20	IGR: 8Kb before SLC9A2(+)		GRCh37	TRANSLOCATION			POLE-intragenic	PRECISE	5to3	POLE (NM_006231) rearrangement: t(2;12)(q12.1;q24.33)(chr2:g.103227722::chr12:g.133243918)			0	0	0	0	7
P-0051860-T01-IM6	SOMATIC	POLE		12	12	133042315	133249856	IGR: 25Kb before FBRSL1(+)	Exon 14 of POLE(-)		GRCh37	DELETION			POLE-intragenic	PRECISE	3to5	POLE (NM_006231) rearrangement: c.1367:POLE_chr12:g.133042315del			207541	79342	73925	0	8
P-0076218-T01-IM7	SOMATIC	POLE	ANKLE2	12	12	133253027	133318869	Intron of POLE(-):104bp after exon 9	Intron of ANKLE2(-):798bp before exon 7		GRCh37	DUPLICATION	8	4	Protein Fusion: in frame  {POLE:ANKLE2}	PRECISE	5to3	POLE (NM_006231) - ANKLE2 (NM_015114) rearrangement: c.909+105:POLE_c.1354-798:ANKLE2dup	yes	unknown	65842	5705	9486	0	4
P-0026830-T02-IM6	SOMATIC	POLE	CLIC5	12	6	133253101	46045382	Intron of POLE(-):30bp after exon 9	Intron of CLIC5(-):2Kb after exon 1		GRCh37	TRANSLOCATION	8	5	Protein Fusion: in frame  {POLE:CLIC5}	PRECISE	5to3	POLE (NM_006231) - CLIC5 (NM_001114086) rearrangement: t(6;12)(p21.2;q24.33)(chr6:g.46045382::chr12:g.133253101)	yes	unknown	0	0	0	0	5
P-0022377-T01-IM6	SOMATIC	POLE		12	12	132609375	133225638	5-UTR of EP400NL(+):2Kb before coding start	Exon 32 of POLE(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {POLE:EP400NL}	PRECISE	5to5	POLE (NM_006231) rearrangement: chr12:g132609375_.c.4026:POLEinv			616263	36933	40830	0	4
P-0065269-T01-IM7	SOMATIC	POLE	GALNT9	12	12	132896939	133254288	Intron of GALNT9(-):9Kb after exon 1	Exon 7 of POLE(-)		GRCh37	DELETION	10	7	Protein Fusion: mid-exon  {POLE:GALNT9}	PRECISE	3to5	POLE (NM_006231) - GALNT9 (NM_001122636) rearrangement: c.596:POLE_c.238+8613:GALNT9del	yes	unknown	357349	83481	57179	0	7
P-0071045-T01-IM7	SOMATIC	POLE	MYO6	12	6	133218847	76511468	Exon 38 of POLE(-)	5-UTR of MYO6(+):16Kb before coding start		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {POLE:MYO6}	PRECISE	5to5	POLE (NM_006231) rearrangement: t(6;12)(q14.1;q24.33)(chr6:g.76511468::chr12:g.133218847)	yes	unknown	0	0	0	0	7
P-0080627-T01-IM7	SOMATIC	POLE	P2RX2	12	12	133196214	133252250	Intron of P2RX2(+):50bp before exon 3	Intron of POLE(-):70bp after exon 11		GRCh37	INVERSION			Protein Fusion: out of frame  {POLE:P2RX2}	PRECISE	5to5	POLE (NM_006231) - P2RX2 (NM_170682) rearrangement: c.1106+71:POLE_c.310-51:P2RX2inv			56036	55063	69513	0	46
P-0069035-T01-IM7	SOMATIC	POLR2B	ARID2	12	4	46245093	57869187	Exon 15 of ARID2(+)	Intron of POLR2B(+):2Kb before exon 8		GRCh37	TRANSLOCATION	10	26	Protein Fusion: mid-exon  {POLR2B:ARID2}	PRECISE	5to3	POLR2B (NM_000938) - ARID2 (NM_152641) rearrangement: t(4;12)(q12;q12)(chr4:g.57869187::chr12:g.46245093)	yes	unknown	0	0	0	0	25
P-0050374-T01-IM7	SOMATIC	POT1	POT1	7	7	124498477	124537224	Intron of POT1(-):533bp after exon 9	Exon 5 of POT1(-)		GRCh37	DELETION	10	18	Deletion within transcript : mid-exon	PRECISE	3to5	POT1 (NM_015450) rearrangement: c.702+534_c.4del	yes	unknown	38747	8209	5147	0	18
P-0029059-T01-IM6	SOMATIC	PPA2PA	BRAF								GRCh37				PPA2PA-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: PPA2PA-BRAF fusion. Note: The rearrangement is an out of frame fusion between genes PPA2PA Exon1 (NM_003711) and BRAF Exon11 (NM_004333).	yes	unknown					
P-0044819-T01-IM6	SOMATIC	PPAP2A	BRAF								GRCh37				PPAP2A-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE CLINICALLY VALIDATED PANEL: PPAP2A-BRAF fusion. Note: The rearrangement is an out of frame fusion between genes PPAP2A Exon1 (NM_176895) and BRAF Exon11 (NM_004333).	yes	unknown					
P-0044819-T01-IM6	SOMATIC	PPAP2A	BRAF	7	5	140482123	54789192	Intron of BRAF(-):630bp before exon 11	Intron of PPAP2A(-):18Kb before exon 2		GRCh37	TRANSLOCATION	10	38	Protein Fusion: out of frame  {PPAP2A:BRAF}	PRECISE	3to5	PPAP2A (NM_176895) - BRAF (NM_004333) fusion: t(5;7)(q11.2;q34)(chr5:g.54789192::chr7:g.140482123)	yes	unknown	0	0	0	0	40
P-0022798-T01-IM6	SOMATIC	PPARG		3	3	9389622	12458249	IGR: 15Kb before THUMPD3(+)	Exon 6 of PPARG(+)		GRCh37	INVERSION			PPARG-intragenic	PRECISE	3to3	PPARG (NM_015869) Rearrangement : chr3:g.9389622_c.866:PPARGinv			3068627	27122	35779	0	13
P-0078849-T01-IM7	SOMATIC	PPFIA1	CCND1	11	11	69462657	70150350	Intron of CCND1(+):104bp before exon 4	Intron of PPFIA1(+):20Kb before exon 3		GRCh37	DUPLICATION	0	57	Protein Fusion: out of frame  {PPFIA1:CCND1}	IMPPRECISE	5to3	PPFIA1 (NM_003626) - CCND1 (NM_053056) rearrangement: c.265-20158:PPFIA1_c.575-105:CCND1dup	yes	unknown	687693	29969	153090	0	57
P-0010093-T01-IM5	SOMATIC	PPM1D	PPM1D	17	17	58739621	58740728	Intron of PPM1D(+): 735bp before exon 6	Exon 6 of PPM1D(+)		GRCh37	INVERSION	0	102	Antisense fusion	IMPRECISE	3to3	PPM1D (NM_003620) rearrangement: c.1261-735_c.1633inv	yes	unknown	1107	7623	8383	0	88
P-0019460-T01-IM6	SOMATIC	PPM1D		17	17	58678120	75766061	Exon 1 of PPM1D(+)	IGR: 47Kb before LOC100132174(-)		GRCh37	INVERSION			PPM1D-intragenic	PRECISE	3to3	PPM1D (NM_003620) rearrangement: c.345_chr17:g.75766061inv			17087941	168727	73979	0	8
P-0034236-T01-IM6	SOMATIC	PPM1D		17	17	58711289	75815341	Exon 3 of PPM1D(+)	IGR: 60Kb before FLJ45079(-)		GRCh37	INVERSION			PPM1D-intragenic	PRECISE	5to5	PPM1D (NM_003620) rearrangement: c.777_chr17:g.75815341inv			17104052	139680	320697	0	50
P-0057256-T02-IM6	SOMATIC	PPM1D		17	12	58734356	4098825	Intron of PPM1D(+):154bp after exon 5	IGR: 181Kb before PARP11(-)		GRCh37	TRANSLOCATION			PPM1D-intragenic	PRECISE	3to5	PPM1D (NM_003620) rearrangement: t(12;17)(p13.32;q23.2)(chr12:g.4098825::chr17:g.58734356)			0	0	0	0	11
P-0059311-T01-IM7	SOMATIC	PPM1D	PTPRT	20	17	41400156	58712038	Exon 5 of PTPRT(-)	Intron of PPM1D(+):700bp after exon 3		GRCh37	TRANSLOCATION	10	49	Protein Fusion: mid-exon  {PPM1D:PTPRT}	PRECISE	3to3	PPM1D (NM_003620) - PTPRT (NM_133170) rearrangement: t(17;20)(q23.2;q12)(chr17:g.58712038::chr20:g.41400156)	yes	unknown	0	0	0	0	49
P-0009689-T01-IM5	SOMATIC	PPM1D	BCAS3	17	17	58678140	59199266	Exon 1 of PPM1D(+)	Intron of BCAS3(+): 37Kb after exon 22		GRCh37	DELETION	70	22	Protein fusion: mid-exon (PPM1D-BCAS3)	PRECISE	3to5	PPM1D (NM_003620) - BCAS3 (NM_001099432) rearrangement: c.365:PPM1D_c.2470+37341:BCAS3del	yes	unknown	521126	28248	30435	0	13
P-0015640-T01-IM6	SOMATIC	PPP2R1A	ZNF468	19	19	52716189	53344778	Intron of PPP2R1A(+): 19bp before exon 6	Exon 5 of ZNF468(-)		GRCh37	DELETION	71	102	Antisense fusion	PRECISE	3to5	PPP2R1A (NM_014225) rearrangement: c.652-19_chr19:g.53344778del	yes	unknown	628589	17676	22834	0	104
P-0070716-T01-IM7	SOMATIC	PPP2R1A	PPP2R1A	19	19	52709335	52725184	Intron of PPP2R1A(+):19bp after exon 3	Intron of PPP2R1A(+):167bp before exon 13		GRCh37	INVERSION	10	131	Antisense Fusion	PRECISE	3to3	PPP2R1A (NM_014225) rearrangement: c.270+19_c.1519-168inv	yes	unknown	15849	16212	39916	0	130
P-0035896-T02-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52723487	52726779	Exon 11 of PPP2R1A(+)	Intron of PPP2R1A(+):1Kb after exon 13		GRCh37	DELETION	10	17	Deletion within transcript : mid-exon	PRECISE	3to5	PPP2R1A (NM_014225) rearrangement: c.1348_c.1661+1285del	yes	unknown	3292	3937	3594	0	17
P-0021173-T01-IM6	SOMATIC	PPP2R1A		19	19	52692916	52693603	Promoter of PPP2R1A(+):138bp from tx start	Intron of PPP2R1A(+):176bp after exon 1		GRCh37	DUPLICATION			Duplication within transcript	PRECISE	5to3	PPP2R1A (NM_014225) rearrangement: c.-434_c.78+176dup			687	3296	3061	0	6
P-0010537-T01-IM5	SOMATIC	PPP2R1A	MYOF	19	10	52724231	95055215	Intron of PPP2R1A(+): 1bp before exon 12	IGR: 11Kb before MYOF(-)		GRCh37	TRANSLOCATION	48	40	PPP2R1A-intragenic	PRECISE	5to5	PPP2R1A (NM_014225) rearrangement: t(10;19)(q23.33;q13.41)(chr10:g.95055215::chr19:g.52724231)	yes	unknown	0	0	0	0	40
P-0056896-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52483011	52719135	5-UTR of ZNF350(-):15Kb before coding start	Exon 7 of PPP2R1A(+)		GRCh37	DELETION	5	4	PPP2R1A-intragenic	PRECISE	3to5	PPP2R1A (NM_014225) rearrangement: c.911:PPP2R1A_chr19:g.52483011del	yes	unknown	236124	15617	11473	0	4
P-0021173-T01-IM6	SOMATIC	PPP2R1A		19	19	52693375	56185948	Exon 1 of PPP2R1A(+)	3-UTR of U2AF2(+):19Kb after coding stop		GRCh37	INVERSION			PPP2R1A-intragenic	PRECISE	5to5	PPP2R1A (NM_014225) rearrangement: c.26:PPP2R1A_chr19:g.56185948inv			3492573	41331	36510	0	25
P-0070624-T01-IM7	SOMATIC	PPP4R2	GBE1	3	3	73114131	82095933	Exon 8 of PPP4R2(+)	IGR: 557Kb before GBE1(-)		GRCh37	INVERSION	10	59	PPP4R2-intragenic	PRECISE	5to5	PPP4R2 (NM_174907) rearrangement: c.767:PPP4R2_chr3:g.82095933inv	yes	unknown	8981802	16580	26381	0	67
P-0016378-T01-IM6	SOMATIC	PPP4R2		20	3	55536538	73046268	IGR: 207Kb before BMP7(-)	Intron of PPP4R2(+):46bp after exon 1		GRCh37	TRANSLOCATION			PPP4R2-intragenic	PRECISE	5to3	PPP4R2 (NM_174907) rearrangement: t(3;20)(p13;q13.31)(chr3:g.73046268::chr20:g.55536538)			0	0	0	0	12
P-0024804-T01-IM6	SOMATIC	PPP4R2		6	3	70482937	73114591	Intron of LMBRD1(-):7Kb after exon 3	Exon 9 of PPP4R2(+)		GRCh37	TRANSLOCATION			PPP4R2-intragenic	PRECISE	3to5	PPP4R2 (NM_174907) rearrangement: t(3;6)(p13;q13)(chr3:g.73114591::chr6:g.70482937)			0	0	0	0	10
P-0009791-T01-IM5	SOMATIC	PPP6C	LOC100272217	9	9	127916047	133439773	Intron of PPP6C(-): 26bp before exon 6	IGR: 13Kb before LOC100272217(-)		GRCh37	INVERSION	6	7	PPP6C-intragenic	PRECISE	5to5	PPP6C (NM_002721) Rearrangement :  c.460-26:PPP6C_chr9:g.133439773inv	yes	unknown	5523726	19204	18660	0	7
P-0036433-T01-IM6	SOMATIC	PPP6R3	FGF3	11	11	68232224	69631211	5-UTR of PPP6R3(+):73Kb before coding start	Intron of FGF3(-):20bp before exon 2		GRCh37	INVERSION	8	5	Transcript Fusion {PPP6R3:FGF3}	PRECISE	3to3	FGF3 (NM_005247) rearrangement: c.221-20:FGF3_chr11:g.68232224inv	yes	unknown	1398987	39956	37278	0	5
P-0053373-T01-IM6	SOMATIC	PRAM1	STK11	19	19	1207117	8555980	Exon 1 of STK11(+)	Intron of PRAM1(-):3bp after exon 5		GRCh37	INVERSION	10	41	Protein Fusion: mid-exon  {PRAM1:STK11}	PRECISE	5to5	PRAM1 (NM_032152) - STK11 (NM_000455) rearrangement: c.1634+4:PRAM1_c.205:STK11inv	yes	unknown	7348863	428970	431991	0	42
P-0027047-T01-IM6	SOMATIC	PRDM1	PRDM1	6	6	106553457	106555034	Exon 5 of PRDM1(+)	Exon 7 of PRDM1(+)		GRCh37	DELETION	10	119	Deletion within transcript : mid-exon	PRECISE	3to5	PRDM1 (NM_001198) rearrangement: c.1422_c.2151del	yes	unknown	1577	4387	4522	0	129
P-0009546-T01-IM5	SOMATIC	PRDM1	PRDM1	6	6	106554881	106556577	Exon 7 of PRDM1(+)	3-UTR of PRDM1(+): 1Kb after coding stop		GRCh37	DELETION	32	17	PRDM1-intragenic	PRECISE	3to5	PRDM1 (NM_001198 ) Rearrangement :  c.1998_*1216del	yes	unknown	1696	2018	1582	0	17
P-0011369-T01-IM5	SOMATIC	PRDM1		6	6	101334934	106536346	IGR: 6Kb after ASCC3(-)	Intron of PRDM1(+): 22bp after exon 2		GRCh37	INVERSION			PRDM1-intragenic	PRECISE	3to3	PRDM1 (NM_001198) Rearrangement: chr6:g.101334934_c.291+22:PRDM1inv			5201412	6824	7639	0	27
P-0019068-T01-IM6	SOMATIC	PRDM1		12	6	80543892	106554248	IGR: 59Kb before OTOGL(+)	Exon 6 of PRDM1(+)		GRCh37	TRANSLOCATION			PRDM1-intragenic	PRECISE	3to5	PRDM1 (NM_001198) rearrangement: t(6;12)(q21;q21.31)(chr6:g.106554248::chr12:g.80543892)			0	0	0	0	10
P-0032719-T01-IM6	SOMATIC	PRDM11	MRE11A	11	11	45134388	94169048	5-UTR of PRDM11(+):112Kb before coding start	Exon 18 of MRE11A(-)		GRCh37	INVERSION	10	22	Protein Fusion: mid-exon  {PRDM11:MRE11A}	PRECISE	3to3	MRE11A (NM_005591) rearrangment: chr11:g.45134388_c.1944:MRE11Ainv	yes	unknown	49034660	189602	327574	0	22
P-0027047-T01-IM6	SOMATIC	PRDM14	PRDM14	8	8	70978587	70986084	Exon 5 of PRDM14(-)	Promoter of PRDM14(-):22Kb from tx start		GRCh37	INVERSION	10	99	Antisense Fusion	PRECISE	5to5	PRDM14 (NM_024504) rearrangement: c.1066_c.-2724inv	yes	unknown	7497	10466	26805	0	125
P-0061408-T01-IM7	SOMATIC	PRDM14	NIPBL	8	5	70980530	36986189	Exon 4 of PRDM14(-)	Exon 10 of NIPBL(+)		GRCh37	TRANSLOCATION	9	5	Antisense Fusion	PRECISE	5to3	PRDM14 (NM_024504) rearrangement: t(5;8)(p13.2;q13.3)(chr5:g.36986189::chr8:g.70980530)	yes	unknown	0	0	0	0	4
P-0070716-T01-IM7	SOMATIC	PRDM14	STMN2	8	8	70981532	80161035	Exon 2 of PRDM14(-)	IGR: 362Kb before STMN2(+)		GRCh37	DELETION	10	73	PRDM14-intragenic	PRECISE	3to5	PRDM14 (NM_024504) rearrangement: c.564:PRDM14_chr8:g.80161035del	yes	unknown	9179503	35687	49660	0	77
P-0071425-T01-IM7	SOMATIC	PRDM14	PRDM14	8	8	70977790	70981437	Intron of PRDM14(-):679bp after exon 5	Exon 2 of PRDM14(-)		GRCh37	INVERSION	10	14	PRDM14-intragenic	PRECISE	3to3	PRDM14 (NM_024504) rearrangement: c.659_c.1183+680inv	yes	unknown	3647	3202	5818	0	14
P-0016968-T01-IM6	SOMATIC	PRDM14		8	2	70981692	89832919	Exon 2 of PRDM14(-)	IGR: 721Kb before MIR4436A(+)		GRCh37	TRANSLOCATION			PRDM14-intragenic	PRECISE	3to5	PRDM14 (NM_024504) rearrangement: t(2;8)(p11.2;q13.3)(chr2:g.89832919::chr8:g.70981692)			0	0	0	0	7
P-0018577-T01-IM6	SOMATIC	PRDM14		8	8	70980836	93352111	Intron of PRDM14(-):69bp before exon 3	IGR: 226Kb before LOC102724710(-)		GRCh37	DELETION			PRDM14-intragenic	PRECISE	3to5	PRDM14 (NM_024504) rearrangement: c.701-69_g.93352111del			22371275	33799	89387	0	84
P-0035533-T01-IM6	SOMATIC	PRDM14		8	8	41231148	70978656	IGR: 112Kb before SFRP1(-)	Exon 5 of PRDM14(-)		GRCh37	DELETION			PRDM14-intragenic	PRECISE	3to5	PRDM14 (NM_024504) rearrangement: c.997:PRDM14_chr8:g.41231148del			29747508	98814	161703	0	18
P-0088354-T01-IM7	SOMATIC	PRDM14		8	8	70978512	70994642	Exon 5 of PRDM14(-)	IGR: 30Kb before NCOA2(-)		GRCh37	DELETION			PRDM14-intragenic	PRECISE	3to5	PRDM14 (NM_024504) rearrangement: c.1141:PRDM14_chr8:g.70994642del			16130	8638	11450	0	5
P-0028149-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69054080	69058481	Intron of PREX2(+):3Kb after exon 33	Exon 34 of PREX2(+)		GRCh37	INVERSION	10	6	Antisense Fusion	PRECISE	3to3	PREX2 (NM_024870) rearrangement: c.4087+3328_c.4125inv	yes	unknown	4401	451	583	0	6
P-0030156-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69012575	69033215	Intron of PREX2(+):497bp after exon 23	Exon 30 of PREX2(+)		GRCh37	DELETION	10	35	Deletion within transcript : mid-exon	PRECISE	3to5	PREX2 (NM_024870) Rearrangement : c.2715+497_c.3655del	yes	unknown	20640	10584	16461	0	36
P-0024692-T02-IM6	SOMATIC	PREX2		8	8	69063885	69069594	Intron of PREX2(+):5Kb after exon 34	Exon 35 of PREX2(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	PREX2 (NM_024870) rearrangement: c.4231+5298_c.4269del			5709	377	380	0	13
P-0056302-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68992925	68995398	Intron of PREX2(+):55bp before exon 17	Intron of PREX2(+):76bp before exon 18		GRCh37	DUPLICATION	0	5	Duplication of 1 exon : in frame	IMPPRECISE	5to3	PREX2 (NM_024870) rearrangement: c.1786-56_c.1879-77dup	yes	unknown	2473	866	604	0	5
P-0072530-T01-IM7	SOMATIC	PREX2	PREX2	8	8	69058390	69098086	Intron of PREX2(+):53bp before exon 34	Intron of PREX2(+):6Kb before exon 36		GRCh37	DUPLICATION	10	6	Duplication of 2 exons : out of frame	PRECISE	5to3	PREX2 (NM_024870) rearrangement: c.4088-54_c.4347-5871dup	yes	unknown	39696	1095	2026	0	6
P-0028072-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68872297	69009311	Intron of PREX2(+):8Kb after exon 1	Exon 22 of PREX2(+)		GRCh37	DUPLICATION	10	14	Duplication within transcript : mid-exon	PRECISE	5to3	PREX2 (NM_024870) rearrangement: c.141+7527_c.2428dup	yes	unknown	137014	22693	43616	0	16
P-0049789-T01-IM6	SOMATIC	PREX2	PREX2	11	8	55663374	69009227	IGR: 13Kb before TRIM51(+)	Intron of PREX2(+):24bp before exon 22		GRCh37	TRANSLOCATION	10	67	PREX2-intragenic	PRECISE	5to5	PREX2 (NM_024870) rearrangement: t(8;11)(q13.2;q11)(chr8:g.69009227::chr11:g.55663374)	yes	unknown	0	0	0	0	75
P-0069025-T01-IM7	SOMATIC	PREX2	PREX2	18	8	287994	68931800	IGR: 31Kb before COLEC12(-)	Exon 3 of PREX2(+)		GRCh37	TRANSLOCATION	10	11	PREX2-intragenic	PRECISE	5to5	PREX2 (NM_024870) rearrangement: t(8;18)(q13.2;p11.32)(chr8:g.68931800::chr18:g.287994)	yes	unknown	0	0	0	0	12
P-0033300-T01-IM6	SOMATIC	PREX2		8	8	67428722	68981973	3-UTR of C8orf46(+):23Kb after coding stop	Intron of PREX2(+):96bp before exon 13		GRCh37	INVERSION			PREX2-intragenic	IMPPRECISE	5to5	PREX2 (NM_024870) rearrangement: c.1444-97:PREX2_chr8:g.67428722inv			1553251	17933	31477	0	5
P-0039776-T02-IM7	SOMATIC	PREX2		8	8	67180527	68950553	IGR: 76Kb before LINC00967(+)	Intron of PREX2(+):26bp after exon 7		GRCh37	INVERSION			PREX2-intragenic	PRECISE	5to5	PREX2 (NM_024870) rearrangement: c.839+26:PREX2_chr8:g.67180527inv			1770026	14906	9407	0	9
P-0057591-T05-IM7	SOMATIC	PREX2		8	8	69009194	127074944	Intron of PREX2(+):57bp before exon 22	IGR: 122Kb before LINC00861(-)		GRCh37	INVERSION			PREX2-intragenic	PRECISE	5to5	PREX2 (NM_024870) rearrangement: c.2369-58:PREX2_chr8:g.127074944inv			58065750	209301	190505	0	86
P-0083200-T01-IM7	SOMATIC	PREX2		8	8	68934184	73410564	Intron of PREX2(+):86bp before exon 4	IGR: 39Kb before KCNB2(+)		GRCh37	INVERSION			PREX2-intragenic	PRECISE	5to5	PREX2 (NM_024870) rearrangement: c.337-87:PREX2_chr8:g.73410564inv			4476380	70489	140492	0	6
P-0073158-T01-IM7	SOMATIC	PREX2	PREX2	8	8	67584975	69069581	5-UTR of C8orf44-SGK3(+):121Kb before coding start	Exon 35 of PREX2(+)		GRCh37	DELETION	0	84	Protein Fusion: mid-exon  {C8orf44-SGK3:PREX2}	IMPPRECISE	3to5	PREX2 (NM_024870) rearrangement: c.4256:PREX2_chr8:g.67584975del	yes	unknown	1484606	48362	23745	0	86
P-0082765-T02-IM7	SOMATIC	PREX2	C8orf34	8	8	69031659	69333892	Intron of PREX2(+):7bp before exon 28	Intron of C8orf34(+):18Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {PREX2:C8orf34}	PRECISE	3to5	PREX2 (NM_024870) - C8orf34 (NM_052958) rearrangement: c.3422-8:PREX2_c.328-17842:C8orf34del			302233	15495	15126	0	14
P-0053739-T01-IM6	SOMATIC	PRKAG2	KMT2C	7	7	151397793	152007332	Intron of PRKAG2(-):25Kb before exon 4	Intron of KMT2C(-):172bp before exon 6		GRCh37	DUPLICATION	10	13	Protein Fusion: in frame  {PRKAG2:KMT2C}	PRECISE	5to3	PRKAG2 (NM_016203) - KMT2C (NM_170606) rearrangement: c.467-25070:PRKAG2_c.740-172:KMT2Cdup	yes	unknown	609539	90993	155945	0	13
P-0013732-T01-IM5	SOMATIC	PRKAR1A	UTRN	17	6	66526189	144894222	Intron of PRKAR1A(+): 47bp after exon 10	Intron of UTRN(+): 4Kb before exon 50		GRCh37	TRANSLOCATION	20	47	Antisense fusion	PRECISE	3to3	PRKAR1A (NM_212471) rearrangement: t(6;17)(q24.2;q24.2)(chr6:g.144894222::chr17:g.66526189)	yes	unknown	0	0	0	0	39
P-0076931-T01-IM7	SOMATIC	PRKAR1A	KCNJ2	17	17	66525345	68358411	Intron of PRKAR1A(+):213bp after exon 9	IGR: 193Kb before KCNJ2(+)		GRCh37	INVERSION	0	19	PRKAR1A-intragenic	IMPPRECISE	5to5	PRKAR1A (NM_212471) rearrangement: c.891+213:PRKAR1A_chr17:g.68358411inv	yes	unknown	1833066	7406	32987	0	19
P-0064627-T01-IM7	SOMATIC	PRKAR1A		17	17	66526142	69610794	Exon 10 of PRKAR1A(+)	IGR: 407Kb before LOC102723505(-)		GRCh37	INVERSION			PRKAR1A-intragenic	PRECISE	5to5	PRKAR1A (NM_212471) rearrangement: c.973:PRKAR1A_chr17:g.69610794inv			3084652	6054	10250	0	16
P-0052146-T02-IM6	SOMATIC	PRKAR2A	RAF1								GRCh37				PRKAR2A-RAF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PRKAR2A-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes PRKAR2A Exon4 (NM_004157) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0048864-T01-IM6	SOMATIC	PRKAR2A	RAF1								GRCh37				PRKAR2A-RAF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PRKAR2A-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes PRKAR2A Exon4 (NM_004157) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0039021-T01-IM6	SOMATIC	PRKCE	ALK	2	2	29447206	45922846	Intron of ALK(-):812bp before exon 20	Intron of PRKCE(+):43Kb after exon 1		GRCh37	INVERSION	10	39	Protein Fusion: out of frame  {PRKCE:ALK}	PRECISE	3to3	PRKCE (NM_005400) - ALK (NM_004304) fusion: c.348+43259:PRKCE_c.3173-812:ALKinv	yes	unknown	16475640	81006	103404	0	36
P-0060406-T01-IM7	SOMATIC	PRKCI	PRKCI	3	3	168083253	170009781	5-UTR of EGFEM1P(+):465Kb before coding start	Intron of PRKCI(+):52bp after exon 13		GRCh37	INVERSION	0	8	Antisense Fusion	IMPPRECISE	3to3	PRKCI (NM_002740) rearrangement: c.1291+52:PRKCI_chr3:g.168083253inv	yes	unknown	1926528	21081	36938	0	8
P-0061518-T01-IM7	SOMATIC	PRKCI	TNIK	3	3	170016874	171186451	Exon 17 of PRKCI(+)	IGR: 122Kb before TNIK(-)		GRCh37	INVERSION	7	8	PRKCI-intragenic	PRECISE	5to5	PRKCI (NM_002740) rearrangement: c.1679:PRKCI_chr3:g.171186451inv	yes	unknown	1169577	4054	6355	0	9
P-0077910-T01-IM7	SOMATIC	PRKCI	LINC00501	3	3	169988140	176999847	Intron of PRKCI(+):68bp before exon 6	IGR: 12Kb before LINC00501(+)		GRCh37	INVERSION	10	56	PRKCI-intragenic	PRECISE	5to5	PRKCI (NM_002740) rearrangement: c.451-69:PRKCI_chr3:g.176999847inv	yes	unknown	7011707	26924	53252	0	64
P-0025663-T01-IM6	SOMATIC	PRKCI		3	3	163003734	169953009	3-UTR of LINC01192(-):17Kb after coding stop	Intron of PRKCI(+):8bp before exon 2		GRCh37	INVERSION			PRKCI-intragenic	PRECISE	5to5	PRKCI (NM_002740) rearrangement: chr3:g.163003734_c.102-9:PRKCIinv			6949275	4477	5408	0	13
P-0032753-T01-IM6	SOMATIC	PRKCI		3	3	169999339	178665442	Intron of PRKCI(+):288bp after exon 10	IGR: 70Kb before ZMAT3(-)		GRCh37	DELETION			PRKCI-intragenic	IMPPRECISE	3to5	PRKCI (NM_002740) rearrangement: c.980+288:PRKCI_chr3:g.178665442del			8666103	12127	22855	0	11
P-0039644-T01-IM6	SOMATIC	PRKCI		3	3	127750434	169952891	IGR: 21Kb before SEC61A1(+)	Intron of PRKCI(+):126bp before exon 2		GRCh37	DELETION			PRKCI-intragenic	PRECISE	3to5	PRKCI (NM_002740) rearrangement: c.102-127:PRKCI_chr3:g.127750434del			42202457	210061	267152	0	13
P-0044568-T01-IM6	SOMATIC	PRKCI		3	3	169921961	170011203	IGR: 18Kb before PRKCI(+)	Exon 14 of PRKCI(+)		GRCh37	INVERSION			PRKCI-intragenic	PRECISE	5to5	PRKCI (NM_002740) rearrangement: c.1324:PRKCI_chr3:g.169921961inv			89242	11333	21203	0	30
P-0084789-T01-IM7	SOMATIC	PRKCI	LARGE	22	3	33913960	169981274	Intron of LARGE(-):47Kb after exon 6	Intron of PRKCI(+):57bp after exon 4		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {PRKCI:LARGE}	PRECISE	3to3	PRKCI (NM_002740) - LARGE (NM_133642) rearrangement: t(3;22)(q26.2;q12.3)(chr3:g.169981274::chr22:g.33913960)			0	0	0	0	47
P-0010894-T02-IM7	SOMATIC	PRKCI	SKIL	3	3	169981371	170088816	Intron of PRKCI(+):154bp after exon 4	Intron of SKIL(+):10Kb after exon 3		GRCh37	DELETION			Protein Fusion: out of frame  {PRKCI:SKIL}	PRECISE	3to5	PRKCI (NM_002740) - SKIL (NM_001248008) rearrangement: c.364+154:PRKCI_c.1098+9599:SKILdel			107445	12277	19058	0	15
P-0030953-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30047642	30330661	Intron of PRKD1(-):76bp before exon 17	Intron of PRKD1(-):66Kb after exon 1		GRCh37	DELETION	9	11	Deletion of 15 exons : out of frame	PRECISE	3to5	PRKD1 (NM_002742) rearrangement: c.2435-76_c.264+65794del	yes	unknown	283019	20250	26703	0	11
P-0066409-T02-IM7	SOMATIC	PRKD1	PRKD1	14	14	30191013	30194582	Intron of PRKD1(-):4Kb after exon 2	Intron of PRKD1(-):159bp after exon 2		GRCh37	DELETION	10	25	Deletion within intron	PRECISE	3to5	PRKD1 (NM_002742) rearrangement: c.403+160_c.403+3729del	yes	unknown	3569	53	92	0	26
P-0050537-T01-IM6	SOMATIC	PRKD1		14	14	30103186	30107808	Intron of PRKD1(-):437bp after exon 8	Intron of PRKD1(-):36bp before exon 6		GRCh37	DUPLICATION			Duplication of 3 exons : out of frame	PRECISE	5to3	PRKD1 (NM_002742) rearrangement: c.908-36_c.1314+438dup			4622	4281	4481	0	23
P-0059013-T02-IM7	SOMATIC	PRKD1	PRKD1	14	14	23924047	30068259	IGR: 15Kb before NGDN(+)	Exon 15 of PRKD1(-)		GRCh37	DELETION	10	15	PRKD1-intragenic	PRECISE	3to5	PRKD1 (NM_002742) rearrangement: c.2140:PRKD1_chr14:g.23924047del	yes	unknown	6144212	14000	19780	0	15
P-0044969-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30108149	30135014	Intron of PRKD1(-):39bp before exon 5	Intron of PRKD1(-):268bp after exon 3		GRCh37	INVERSION	0	5	PRKD1-intragenic	IMPPRECISE	3to3	PRKD1 (NM_002742) rearrangement: c.535+269_c.697-39inv	yes	unknown	26865	1514	2979	0	5
P-0073993-T01-IM7	SOMATIC	PRKD1	FBXO33	14	14	30107836	40365084	Intron of PRKD1(-):63bp after exon 5	IGR: 500Kb before FBXO33(-)		GRCh37	DELETION	10	18	PRKD1-intragenic	PRECISE	3to5	PRKD1 (NM_002742) rearrangement: c.907+64:PRKD1_chr14:g.40365084del	yes	unknown	10257248	23084	123310	0	18
P-0035167-T01-IM6	SOMATIC	PRKD1		14	14	26379764	30103427	IGR: 535Kb before NOVA1(-)	Intron of PRKD1(-):196bp after exon 8		GRCh37	INVERSION			PRKD1-intragenic	PRECISE	5to5	PRKD1 (NM_002742) rearrangement: c.1314+197:PRKD1_chr14:g.26379764inv			3723663	21669	17438	0	27
P-0035710-T01-IM6	SOMATIC	PRKD1		14	14	29876388	30194791	IGR: 20Kb before MIR548AI(-)	Exon 2 of PRKD1(-)		GRCh37	DELETION			PRKD1-intragenic	PRECISE	3to5	PRKD1 (NM_002742) rearrangement: chr14:g.29876388_c.354del			318403	23572	32118	0	16
P-0010742-T01-IM5	SOMATIC	PRMT8	APC	12	5	3608058	112175904	Intron of PRMT8(+): 7Kb after exon 1	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	0	16	Protein fusion: mid-exon (APC-PRMT8)	IMPRECISE	5to3	APC (NM_000038) - PRMT8 (NM_019854) rearrangement : t(5;12)(q22.2;p12.32)(chr5:g.112175904::chr12:g.3608058)	yes	unknown	0	0	0	0	15
P-0041973-T01-IM6	SOMATIC	PROSC	FGFR1								GRCh37				PROSC-FGFR1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PROSC-FGFR1 fusion. Note: The rearrangement is an in-frame fusion between genes PROSC Exon5 (NM_007198) and FGFR1 Exon3 (NM_015850).	yes	unknown					
P-0034643-T01-IM6	SOMATIC	PRSS57	TCF3	19	19	687673	1619041	Intron of PRSS57(-):485bp before exon 4	Intron of TCF3(-):68bp after exon 15		GRCh37	DELETION	10	15	Protein Fusion: out of frame  {TCF3:PRSS57}	PRECISE	3to5	TCF3 (NM_001136139) - PRSS57 (NM_214710) rearrangement: c.1450+69:TCF3_c.382-485:PRSSS57del	yes	unknown	931368	25185	25579	0	22
P-0066705-T01-IM7	SOMATIC	PRUNE	SETDB1	1	1	150935986	150989368	Intron of SETDB1(+):19bp before exon 20	Intron of PRUNE(+):919bp before exon 2		GRCh37	DUPLICATION	10	8	Protein Fusion: out of frame  {PRUNE:SETDB1}	PRECISE	5to3	PRUNE (NM_021222) - SETDB1 (NM_001145415) rearrangement: c.40-920:PRUNE_c.3458-20:SETDB1dup	yes	unknown	53382	4436	7805	0	8
P-0042958-T01-IM6	SOMATIC	PSMA5	SMYD3	1	1	109951264	246021970	Intron of PSMA5(-):1Kb after exon 8	Exon 10 of SMYD3(-)		GRCh37	DUPLICATION	5	2	Protein Fusion: mid-exon  {PSMA5:SMYD3}	PRECISE	5to3	PSMA5 (NM_002790) - SMYD3 (NM_001167740) rearrangement: c.648+1286:PSMA5_c.904:SMYD3dup	yes	unknown	136070706	546014	405106	0	2
P-0027021-T01-IM6	SOMATIC	PSMB8	TAP1	6	6	32809592	32814846	Intron of PSMB8(-):80bp before exon 5	Exon 10 of TAP1(-)		GRCh37	DELETION	10	12	Protein Fusion: mid-exon  {TAP1:PSMB8}	PRECISE	3to5	TAP1 (NM_000593) - PSMB8 (NM_148919) Rearrangement (TAP1 exon10 with PSMB8 exon5 ) : c.2219:TAP1_c.538-80:PSMB8del	yes	unknown	5254	2382	3719	0	11
P-0022750-T01-IM6	SOMATIC	PSMG2	TP53	18	17	12724031	7579703	Intron of PSMG2(+):466bp before exon 6	Exon 3 of TP53(-)		GRCh37	TRANSLOCATION	10	7	Protein Fusion: mid-exon  {TP53:PSMG2}	PRECISE	5to5	TP53 (NM_000546) - PSMG2 (NM_020232) rearrangement: t(17;18)(p13.1;p11.21)(chr17:g.7579703::chr18:g.12724031)	yes	unknown	0	0	0	0	10
P-0019030-T01-IM6	SOMATIC	PTCD3	BCL2L11	2	2	86352448	111883044	Intron of PTCD3(+):129bp before exon 11	Intron of BCL2L11(+):1Kb after exon 2		GRCh37	DUPLICATION	10	15	Protein Fusion: out of frame  {BCL2L11:PTCD3}	PRECISE	5to3	BCL2L11 (NM_138621) - PTCD3 (NM_017952) rearrangement: c.394+1328:BCL2L11_c.805-130:PTCD3dup	yes	unknown	25530596	86342	94548	0	15
P-0065425-T01-IM7	SOMATIC	PTCH1	PTCH1	9	9	98243076	98245245	Intron of PTCH1(-):206bp before exon 6	Intron of PTCH1(-):760bp before exon 4		GRCh37	DELETION	3	3	Deletion of 2 exons : in frame	PRECISE	3to5	PTCH1 (NM_000264) rearrangement: c.585-760_c.747-206del	yes	unknown	2169	2592	2205	0	3
P-0065276-T02-IM7	SOMATIC	PTCH1	CHMP5	9	9	33273792	98226360	Intron of CHMP5(+):3Kb after exon 5	Intron of PTCH1(-):2Kb before exon 16		GRCh37	INVERSION	9	7	Protein Fusion: out of frame  {PTCH1:CHMP5}	PRECISE	5to5	PTCH1 (NM_000264) - CHMP5 (NM_016410) rearrangement: c.2561-2080:PTCH1_c.387+2571:CHMP5inv	yes	unknown	64952568	256602	308642	0	8
P-0029944-T01-IM6	SOMATIC	PTCH1	PTCH1	9	9	98108601	98211296	IGR: 97Kb before PTCH1(-)	Intron of PTCH1(-):54bp after exon 22		GRCh37	DELETION	10	42	PTCH1-intragenic	PRECISE	3to5	PTCH1 (NM_000264) rearrangement: c.3804+55:PTCH1_chr9:g.98108601del	yes	unknown	102695	3399	3295	0	42
P-0002382-T01-IM3	SOMATIC	PTCH1		9	9	98244574	98456521	Intron of PTCH1(-): 89bp before exon 4	IGR: 112Kb before C9orf130(-)		GRCh37	DELETION			PTCH1-intragenic	PRECISE	3to5	PTCH1 (NM_000264) deletion (211947bp) :  PTCH1:c.585-89_chr9:g.98456521del			211947	11158	7560	0	8
P-0010202-T01-IM5	SOMATIC	PTCH1		9	9	98209605	104623233	Exon 23 of PTCH1(-)	IGR: 269Kb before PPP3R2(-)		GRCh37	DELETION			PTCH1-intragenic	PRECISE	3to5	PTCH1 (NM_000264) rearrangement : c.3933:PTCH1_chr9:g.104623233del			6413628	71048	68945	0	12
P-0034921-T01-IM6	SOMATIC	PTEN	RNLS	10	10	89693137	90317365	Intron of PTEN(+):129bp after exon 5	Intron of RNLS(-):15Kb after exon 4		GRCh37	DELETION	10	5	Antisense Fusion	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.492+129:PTEN_chr10:g.90317365del	yes	unknown	624228	4997	5928	0	6
P-0008682-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89711725	89720727	Intron of PTEN(+): 150bp before exon 6	Exon 8 of PTEN(+)		GRCh37	INVERSION	25	13	Antisense fusion	PRECISE	3to3	PTEN (NM_000314) rearrangement :  c.493-150_ 878inv	yes	unknown	9002	2343	2990	0	10
P-0056842-T01-IM6	SOMATIC	PTEN	PTEN	14	10	74421170	89624338	Intron of COQ6(+):898bp after exon 2	Intron of PTEN(+):33bp after exon 1		GRCh37	TRANSLOCATION	10	96	Antisense Fusion	PRECISE	3to3	PTEN (NM_000314) rearrangement: t(10;14)(q23.31;q24.3)(chr10:g.89624338::chr14:g.74421170)	yes	unknown	0	0	0	0	104
P-0073158-T01-IM7	SOMATIC	PTEN	RNLS	10	10	89624252	90153918	Exon 1 of PTEN(+)	Intron of RNLS(-):31Kb before exon 5		GRCh37	DELETION	10	15	Antisense Fusion	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.26:PTEN_chr10:g.90153918del	yes	unknown	529666	6872	2217	0	55
P-0073616-T02-IM7	SOMATIC	PTEN		10	1	89624291	204109769	Exon 1 of PTEN(+)	Intron of ETNK2(-):523bp before exon 5		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to5	PTEN (NM_000314) rearrangement: t(1;10)(q32.1;q23.31)(chr1:g.204109769::chr10:g.89624291)			0	0	0	0	16
P-0041429-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89687739	89692662	Intron of PTEN(+):2Kb after exon 3	Intron of PTEN(+):107bp before exon 5		GRCh37	DELETION	10	6	Deletion of 1 exon : out of frame	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.209+2425_c.254-108del	yes	unknown	4923	891	383	0	6
P-0073266-T02-IM7	SOMATIC	PTEN	PTEN	10	10	89691022	89694523	Intron of PTEN(+):176bp after exon 4	Intron of PTEN(+):2Kb after exon 5		GRCh37	DELETION	4	5	Deletion of 1 exon : out of frame	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.253+176_c.492+1515del	yes	unknown	3501	1256	987	0	6
P-0060260-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89626726	89720594	Intron of PTEN(+):2Kb after exon 1	Intron of PTEN(+):56bp before exon 8		GRCh37	DELETION	10	9	Deletion of 6 exons : out of frame	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.79+2421_c.802-57del	yes	unknown	93868	6270	5226	0	11
P-0081970-T01-IM7	SOMATIC	PTEN		10	10	89623254	89624923	5-UTR of PTEN(+):972bp before coding start	Intron of PTEN(+):618bp after exon 1		GRCh37	DELETION			Deletion within transcript	IMPPRECISE	3to5	PTEN (NM_000314) rearrangement: c.79+618:PTEN_chr10:g.89623254del			1669	4193	4672	0	7
P-0085029-T01-IM7	SOMATIC	PTEN		10	10	89621303	89624320	Promoter of PTEN(+):2Kb from tx start	Intron of PTEN(+):15bp after exon 1		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.79+15:PTEN_chr10:g.89621303del			3017	3908	8882	0	24
P-0016295-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89623348	89624280	5-UTR of PTEN(+):878bp before coding start	Exon 1 of PTEN(+)		GRCh37	DELETION	0	25	Deletion within transcript : mid-exon	IMPPRECISE	3to5	PTEN (NM_000314)  rearrangment : c.-879_c.54PTENdel	yes	unknown	932	606	401	0	30
P-0027593-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89692977	89694318	Exon 5 of PTEN(+)	Intron of PTEN(+):1Kb after exon 5		GRCh37	DELETION	10	3	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.461_c.492+1310del	yes	unknown	1341	616	277	0	4
P-0058800-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89709882	89711897	Intron of PTEN(+):2Kb before exon 6	Exon 6 of PTEN(+)		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.493-1993_c.515del	yes	unknown	2015	204	137	0	20
P-0059855-T02-IM7	SOMATIC	PTEN	PTEN	10	10	89653000	89653787	Intron of PTEN(+):781bp before exon 2	Exon 2 of PTEN(+)		GRCh37	DELETION	8	52	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.80-782_c.85del	yes	unknown	787	197	73	93	7
P-0061267-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89692849	89710770	Exon 5 of PTEN(+)	Intron of PTEN(+):1Kb before exon 6		GRCh37	DELETION	0	15	Deletion within transcript : mid-exon	IMPPRECISE	3to5	PTEN (NM_000314) rearrangement: c.333_c.493-1105del	yes	unknown	17921	829	999	0	18
P-0067374-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89684812	89717618	Intron of PTEN(+):457bp before exon 3	Exon 7 of PTEN(+)		GRCh37	DELETION	10	17	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.165-458_c.643del	yes	unknown	32806	4009	3721	0	18
P-0071448-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89624304	89625517	Exon 1 of PTEN(+)	Intron of PTEN(+):1Kb after exon 1		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.78_c.79+1212del	yes	unknown	1213	399	200	0	19
P-0076017-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89717615	89720025	Exon 7 of PTEN(+)	Intron of PTEN(+):625bp before exon 8		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.640_c.802-626del	yes	unknown	2410	741	528	0	11
P-0012731-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89692794	89697381	Exon 5 of PTEN(+)	Intron of PTEN(+): 4Kb after exon 5		GRCh37	DELETION	45	17	Deletion within transcript: mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.278_c.492+4373del	yes	unknown	4587	1071	676	0	17
P-0014162-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89690805	89696514	Exon 4 of PTEN(+)	Intron of PTEN(+): 4Kb after exon 5		GRCh37	DELETION	14	5	Deletion within transcript: mid-exon	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.212_c.492+3506PTENdel	yes	unknown	5709	1745	299	0	5
P-0042744-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89705244	89717813	Intron of PTEN(+):7Kb before exon 6	Intron of PTEN(+):37bp after exon 7		GRCh37	DUPLICATION	10	35	Duplication of 2 exons : in frame	PRECISE	5to3	PTEN (NM_000314) rearrangement: c.493-6631_c.801+37dup	yes	unknown	12569	1350	3012	0	42
P-0076562-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89690690	89704458	Intron of PTEN(+):112bp before exon 4	Intron of PTEN(+):7Kb before exon 6		GRCh37	DUPLICATION	10	45	Duplication of 2 exons : out of frame	PRECISE	5to3	PTEN (NM_000314) rearrangement: c.210-113_c.493-7417dup	yes	unknown	13768	2092	3280	0	45
P-0063368-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89717735	89723095	Exon 7 of PTEN(+)	Intron of PTEN(+):2Kb before exon 9		GRCh37	DUPLICATION	10	22	Duplication within transcript : mid-exon	PRECISE	5to3	PTEN (NM_000314) rearrangement: c.760_c.1027-1949dup	yes	unknown	5360	1314	1924	0	23
P-0005176-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89687559	89720702	Intron of PTEN(+): 2Kb after exon 3	Exon 8 of PTEN(+)		GRCh37	DUPLICATION	13	14	Duplication within transcript: mid-exon	PRECISE	5to3	PTEN (NM_000314) rearrangement: c.209+2245_c.853dup	yes	unknown	33143	3435	3857	0	12
P-0000447-T01-IM3	SOMATIC	PTEN	PTEN	10	10	89718714	89720711	Intron of PTEN(+): 938bp after exon 7	Exon 8 of PTEN(+)		GRCh37	DUPLICATION	38	21	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	1997	457	291	0	14
P-0014905-T01-IM6	SOMATIC	PTEN	MYOF	10	10	89720704	95203058	Exon 8 of PTEN(+)	Intron of MYOF(-): 9Kb after exon 3		GRCh37	INVERSION	92	38	Protein fusion: mid-exon (PTEN-MYOF)	PRECISE	3to3	PTEN (NM_000314)- MYOF (NM_013451) Rearrangement : c.855:PTEN_c.236+8749:MYOFinv	yes	unknown	5482354	5821	6578	0	31
P-0031891-T01-IM6	SOMATIC	PTEN	KCNB2	10	8	89690932	73786031	Intron of PTEN(+):86bp after exon 4	Intron of KCNB2(+):62Kb before exon 3		GRCh37	TRANSLOCATION	0	7	Protein Fusion: out of frame  {PTEN:KCNB2}	IMPPRECISE	3to5	PTEN (NM_000314) - KCNB2 (NM_004770) rearrangement: t(8;10)(q13.3;q23.31)(chr8:g.73786031::chr10:g.89690932)	yes	unknown	0	0	0	0	7
P-0021909-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89720760	89755903	Exon 8 of PTEN(+)	IGR: 133Kb before PTEN(+)		GRCh37	DELETION	10	4	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.911:PTEN_chr10:g.89755903del	yes	unknown	35143	1794	2489	0	16
P-0006378-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89653897	89738911	Intron of PTEN(+): 31bp after exon 2	IGR: 10Kb after PTEN(+)		GRCh37	DELETION	18	13	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) Rearrangement :  c.164+31_chr10:g.89738911del	yes	unknown	85014	7482	4597	0	12
P-0047982-T01-IM6	SOMATIC	PTEN	IL6ST	10	5	89624398	55280572	Intron of PTEN(+):93bp after exon 1	3-UTR of IL6ST(-):10Kb after coding stop		GRCh37	TRANSLOCATION	0	12	PTEN-intragenic	IMPPRECISE	3to5	PTEN (NM_000314) rearrangement: t(5;10)(q11.2;q23.31)(chr5:g.55280572::chr10:g.89624398)	yes	unknown	0	0	0	0	14
P-0049407-T01-IM6	SOMATIC	PTEN	PTEN	17	10	49865374	89711879	Intron of CA10(-):40Kb before exon 4	Exon 6 of PTEN(+)		GRCh37	TRANSLOCATION	10	38	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: t(10;17)(q23.31;q21.33)(chr10:g.89711879::chr17:g.49865374)	yes	unknown	0	0	0	0	44
P-0050249-T01-IM6	SOMATIC	PTEN	PTEN	10	10	88753165	89690709	5-UTR of AGAP11(+):8Kb before coding start	Intron of PTEN(+):93bp before exon 4		GRCh37	INVERSION	10	14	PTEN-intragenic	PRECISE	5to5	PTEN (NM_000314) rearrangement: c.210-94:PTEN_chr10:g.88753165inv	yes	unknown	937544	1763	3367	0	15
P-0052159-T01-IM6	SOMATIC	PTEN	HIPK1	10	1	89685380	114517180	Intron of PTEN(+):66bp after exon 3	3-UTR of HIPK1(+):20Kb after coding stop		GRCh37	TRANSLOCATION	10	38	PTEN-intragenic	PRECISE	3to3	PTEN (NM_000314) rearrangement: t(1;10)(p13.2;q23.31)(chr1:g.114517180::chr10:g.89685380)	yes	unknown	0	0	0	0	37
P-0053553-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89624254	89752263	Exon 1 of PTEN(+)	IGR: 129Kb before PTEN(+)		GRCh37	DELETION	10	16	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.28:PTEN_chr10:g.89752263del	yes	unknown	128009	8167	2987	0	41
P-0042971-T01-IM6	SOMATIC	PTEN	PTEN	10	10	9509369	89624240	IGR: 192Kb before LINC00709(+)	Exon 1 of PTEN(+)		GRCh37	INVERSION	10	5	PTEN-intragenic	PRECISE	5to5	PTEN (NM_000314) rearrangement: c.14:PTEN_chr10:g.9509369inv	yes	unknown	80114871	223217	149111	0	5
P-0042489-T01-IM6	SOMATIC	PTEN	RNLS	10	10	89711955	89858758	Exon 6 of PTEN(+)	IGR: 175Kb before RNLS(-)		GRCh37	DELETION	10	14	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.573:PTEN_chr10:g.89858758del	yes	unknown	146803	4284	3141	0	14
P-0061681-T01-IM7	SOMATIC	PTEN	PTEN	10	10	12235947	89720570	5-UTR of NUDT5(-):26Kb before coding start	Intron of PTEN(+):80bp before exon 8		GRCh37	DELETION	10	38	PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.802-81:PTEN_chr10:g.12235947del	yes	unknown	77484623	476524	401914	0	47
P-0065975-T01-IM7	SOMATIC	PTEN	SLC12A8	10	3	89725008	124807656	Intron of PTEN(+):35bp before exon 9	Intron of SLC12A8(-):442bp before exon 12		GRCh37	TRANSLOCATION	10	12	PTEN-intragenic	PRECISE	5to3	PTEN (NM_000314) rearrangement: t(3;10)(q21.2;q23.31)(chr3:g.124807656::chr10:g.89725008)	yes	unknown	0	0	0	0	14
P-0028792-T01-IM7	SOMATIC	PTEN		17	10	70470445	89624469	3-UTR of LINC00673(-):118Kb after coding stop	Intron of PTEN(+):164bp after exon 1		GRCh37	TRANSLOCATION			PTEN-intragenic	PRECISE	5to3	PTEN (NM_000314) rearrangement: t(10;17)(q23.31;q24.3)(chr10:g.89624469::chr17:g.70470445)			0	0	0	0	39
P-0030812-T01-IM6	SOMATIC	PTEN		10	1	89725115	151714790	Exon 9 of PTEN(+)	IGR: 17Kb before MRPL9(-)		GRCh37	TRANSLOCATION			PTEN-intragenic	PRECISE	3to3	PTEN (NM_000314) rearrangement: t(1;10)(q21.3;q23.31)(chr1:g.151714790::chr10:g.89725115)			0	0	0	0	17
P-0032801-T01-IM6	SOMATIC	PTEN		10	10	89685138	90636313	Intron of PTEN(+):131bp before exon 3	IGR: 4Kb before STAMBPL1(+)		GRCh37	INVERSION			PTEN-intragenic	PRECISE	5to5	PTEN (NM_000314) Rearrangement: c.165-132:PTEN_chr10:g.90636313inv			951175	9444	4995	0	9
P-0070907-T01-IM7	SOMATIC	PTEN		10	10	89624242	89743521	Exon 1 of PTEN(+)	IGR: 120Kb before PTEN(+)		GRCh37	DELETION			PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.16:PTEN_chr10:g.89743521del			119279	9707	7332	0	40
P-0074268-T01-IM7	SOMATIC	PTEN		10	10	89693122	89732521	Intron of PTEN(+):114bp after exon 5	IGR: 109Kb before PTEN(+)		GRCh37	DELETION			PTEN-intragenic	PRECISE	3to5	PTEN (NM_000314) rearrangement: c.492+114:PTEN_chr10:g.89732521del			39399	1972	2686	0	6
P-0027826-T01-IM6	SOMATIC	PTEN	TPST1	10	7	89692753	65698751	Intron of PTEN(+):16bp before exon 5	5-UTR of TPST1(+):7Kb before coding start		GRCh37	TRANSLOCATION	10	46	Transcript Fusion {TPST1:PTEN}	PRECISE	5to3	PTEN (NM_000314) rearrangement: t(7;10)(q11.21;q23.31)(chr7:g.65698751::chr10:g.89692753)	yes	unknown	0	0	0	0	58
P-0052291-T01-IM6	SOMATIC	PTK2	DOT1L	19	8	2222295	141713215	Exon 24 of DOT1L(+)	Intron of PTK2(-):409bp before exon 25		GRCh37	TRANSLOCATION	10	15	Protein Fusion: mid-exon  {PTK2:DOT1L}	PRECISE	5to5	PTK2 (NM_005607) - DOT1L (NM_032482) rearrangement: t(8;19)(q24.3;p13.3)(chr8:g.141713215::chr19:g.2222295)	yes	unknown	0	0	0	0	18
P-0017892-T01-IM6	SOMATIC	PTK2B	RECQL4	8	8	27181977	145741293	5-UTR of PTK2B(+):73Kb before coding start	Intron of RECQL4(-):19bp before exon 6		GRCh37	DELETION	10	10	Antisense Fusion	PRECISE	3to5	RECQL4 (NM_004260) Rearrangement : c.-1259:PTK2B_c.1132-19:RECQL4	yes	unknown	118559316	491057	583569	0	11
P-0070826-T01-IM7	SOMATIC	PTP4A1	FUT9	6	6	64289028	96540150	Intron of PTP4A1(+):95bp after exon 4	5-UTR of FUT9(+):111Kb before coding start		GRCh37	DELETION	10	37	Transcript Fusion {PTP4A1:FUT9}	PRECISE	3to5	PTP4A1 (NM_003463) rearrangement: c.329+95:PTP4A1_chr6:g.96540150del	yes	unknown	32251122	106107	76123	0	38
P-0019456-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	112915310	112920547	Intron of PTPN11(+):144bp before exon 8	Intron of PTPN11(+):538bp after exon 10		GRCh37	DUPLICATION	10	12	Duplication of 3 exons : out of frame	PRECISE	5to3	PTPN11 (NM_002834)  rearrangement: c.854-145_c.1224+538dup	yes	unknown	5237	4861	7790	0	13
P-0040588-T01-IM6	SOMATIC	PTPN11	MED13L	12	12	112924274	115772818	Intron of PTPN11(+):4bp before exon 11	IGR: 624Kb before MED13L(-)		GRCh37	DELETION	5	3	PTPN11-intragenic	PRECISE	3to5	PTPN11 (NM_002834) rearrangement: c.1225-5:PTPN11_chr12:g.115772818del	yes	unknown	2848544	32761	75373	0	3
P-0048434-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	92988526	112924299	IGR: 108Kb before C12orf74(+)	Exon 11 of PTPN11(+)		GRCh37	DELETION	10	22	PTPN11-intragenic	PRECISE	3to5	PTPN11 (NM_002834) rearrangement: c.1245:PTPN11_chr12:g.92988526del	yes	unknown	19935773	45693	62545	0	22
P-0056500-T01-IM6	SOMATIC	PTPN11	GALNTL6	12	4	112888102	172542014	Intron of PTPN11(+):19bp before exon 3	IGR: 193Kb before GALNTL6(+)		GRCh37	TRANSLOCATION	10	51	PTPN11-intragenic	PRECISE	5to3	PTPN11 (NM_002834) rearrangement: t(4;12)(q34.1;q24.13)(chr4:g.172542014::chr12:g.112888102)	yes	unknown	0	0	0	0	51
P-0024150-T01-IM6	SOMATIC	PTPN11	RPH3A	12	12	112942553	113053952	Exon 15 of PTPN11(+)	IGR: 176Kb before RPH3A(+)		GRCh37	INVERSION	9	2	PTPN11-intragenic	PRECISE	5to5	PTPN11 (NM_002834) rearrangement: c.1767_chr12:g.113053952inv	yes	unknown	111399	544	797	0	3
P-0069838-T01-IM7	SOMATIC	PTPN11	SCML4	12	6	112915700	108097526	Exon 9 of PTPN11(+)	5-UTR of SCML4(-):71Kb before coding start		GRCh37	TRANSLOCATION	10	16	PTPN11-intragenic	PRECISE	5to3	PTPN11 (NM_002834) rearrangement: t(6;12)(q21;q24.13)(chr6:g.108097526::chr12:g.112915700)	yes	unknown	0	0	0	0	18
P-0010610-T01-IM5	SOMATIC	PTPN22	VTCN1	1	1	114406772	117699038	Intron of PTPN22(-): 5Kb before exon 2	Intron of VTCN1(-): 158bp after exon 3		GRCh37	DELETION	7	6	Protein fusion: out of frame (VTCN1-PTPN22)	PRECISE	3to5	VTCN1 (NM_024626) - PTPN22 (NM_015967) rearrangement: c.445+158:VTCN1_c.88-4690:PTPN22del	yes	unknown	3292266	13332	9522	0	6
P-0045399-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8733728	10203900	Intron of PTPRD(-):51bp after exon 12	5-UTR of PTPRD(-):2Mb before coding start		GRCh37	INVERSION	10	10	Antisense Fusion	PRECISE	5to5	PTPRD (NM_002839) rearrangement: c.64+52:PTPRD_chr9:g.10203900inv	yes	unknown	1470172	1428	1093	0	10
P-0064964-T01-IM7	SOMATIC	PTPRD	MLLT3	9	9	8486178	20356930	Exon 28 of PTPRD(-)	Intron of MLLT3(-):2Kb before exon 9		GRCh37	INVERSION	10	17	Antisense Fusion	PRECISE	5to5	PTPRD (NM_002839) rearrangement: c.2639:PTPRD_chr9:g.20356930inv	yes	unknown	11870752	50283	41764	0	19
P-0072018-T02-IM7	SOMATIC	PTPRD	PTPRD	9	9	8410748	8437132	Intron of PTPRD(-):6Kb before exon 36	Intron of PTPRD(-):443bp before exon 35		GRCh37	DELETION	8	5	Deletion of 1 exon : out of frame	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.3989-443_c.4087-6088del	yes	unknown	26384	911	940	0	5
P-0020882-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8326360	8340272	Intron of PTPRD(-):5Kb after exon 44	Intron of PTPRD(-):70bp after exon 42		GRCh37	DELETION	10	2	Deletion of 2 exons : out of frame	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.5534+5222_c.5253+71del	yes	unknown	13912	3465	4752	0	4
P-0074792-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8493081	8824430	Intron of PTPRD(-):102bp before exon 27	5-UTR of PTPRD(-):507Kb before coding start		GRCh37	DELETION	10	7	Deletion within transcript	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.2350-102:PTPRD_chr9:g.8824430del	yes	unknown	331349	20347	13817	0	7
P-0020684-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8410441	8518093	Intron of PTPRD(-):6Kb before exon 36	Exon 21 of PTPRD(-)		GRCh37	DELETION	6	7	Deletion within transcript : mid-exon	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.4087-5781_c.1298del	yes	unknown	107652	33745	44728	0	7
P-0021034-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8460483	8877584	Exon 33 of PTPRD(-)	5-UTR of PTPRD(-):560Kb before coding start		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.3803_c.-104+141113del	yes	unknown	417101	48775	41993	0	9
P-0064272-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8469062	8471010	Intron of PTPRD(-):2Kb after exon 31	Exon 31 of PTPRD(-)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.3489_c.3504+1933del	yes	unknown	1948	645	348	0	8
P-0032686-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8633201	8722538	Intron of PTPRD(-):115bp after exon 14	Intron of PTPRD(-):11Kb after exon 12		GRCh37	DUPLICATION	0	16	Duplication of 2 exons : in frame	IMPPRECISE	5to3	PTPRD (NM_002839) rearrangement: c.64+11242_c.352+116dup	yes	unknown	89337	2157	2438	0	16
P-0044335-T01-IM6	SOMATIC	PTPRD		9	9	8485077	8492070	Intron of PTPRD(-):149bp after exon 29	Intron of PTPRD(-):791bp after exon 27		GRCh37	DUPLICATION			Duplication of 2 exons : out of frame	PRECISE	5to3	PTPRD (NM_002839) rearrangement: c.2467+792_c.3153+150dup			6993	2932	4384	0	20
P-0047504-T01-IM6	SOMATIC	PTPRD		9	9	8341701	8405591	Exon 40 of PTPRD(-)	Intron of PTPRD(-):931bp before exon 36		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	PTPRD (NM_002839) rearrangement: c.4087-931_c.4939dup			63890	5840	10474	0	50
P-0021626-T01-IM6	SOMATIC	PTPRD	GRM8	9	7	8338994	126480752	Exon 43 of PTPRD(-)	Intron of GRM8(-):62Kb after exon 5		GRCh37	TRANSLOCATION	10	29	Protein Fusion: mid-exon  {GRM8:PTPRD}	PRECISE	3to5	GRM8 (NM_000845) - PTPRD (NM_002839) rearrangement: t(7;9)(q31.33;p24.1)(chr7:g.126480752::chr9:g.8338994)	yes	unknown	0	0	0	0	30
P-0033171-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8208089	8485172	IGR: 106Kb before PTPRD(-)	Intron of PTPRD(-):54bp after exon 29		GRCh37	DELETION	10	11	PTPRD-intragenic	PRECISE	3to5	PTPRD (NM_002839) rearrangement: chr9:g.8208089_c.3153+55del	yes	unknown	277083	26792	22006	0	11
P-0061305-T03-IM7	SOMATIC	PTPRD	PTPRD	9	9	7700542	8338993	IGR: 96Kb before TMEM261(-)	Exon 43 of PTPRD(-)		GRCh37	DELETION	10	13	PTPRD-intragenic	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.5308:PTPRD_chr9:g.7700542del	yes	unknown	638451	7538	8368	0	13
P-0055106-T03-IM7	SOMATIC	PTPRD	TYRP1	9	9	8518493	12693322	Intron of PTPRD(-):64bp before exon 21	Promoter of TYRP1(+):63bp from tx start		GRCh37	DELETION	10	28	PTPRD-intragenic	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.962-64:PTPRD_chr9:g.12693322del	yes	unknown	4174829	18711	13824	0	55
P-0063535-T02-IM7	SOMATIC	PTPRD	FAM205BP	9	9	8331858	34864686	Intron of PTPRD(-):122bp before exon 44	IGR: 34Kb before FAM205BP(-)		GRCh37	DELETION	10	26	PTPRD-intragenic	PRECISE	3to5	PTPRD (NM_002839) rearrangement: c.5380-122:PTPRD_chr9:g.34864686del	yes	unknown	26532828	166805	199251	0	26
P-0069566-T01-IM7	SOMATIC	PTPRD	SGCD	9	5	8504298	155591091	Exon 23 of PTPRD(-)	IGR: 163Kb before SGCD(+)		GRCh37	TRANSLOCATION	10	6	PTPRD-intragenic	PRECISE	3to3	PTPRD (NM_002839) rearrangement: t(5;9)(q33.2;p24.1)(chr5:g.155591091::chr9:g.8504298)	yes	unknown	0	0	0	0	6
P-0016627-T01-IM6	SOMATIC	PTPRD		9	7	8517959	62328179	Exon 21 of PTPRD(-)	IGR: 423Kb before ZNF733P(-)		GRCh37	TRANSLOCATION			PTPRD-intragenic	PRECISE	3to3	PTPRD (NM_002839)  rearrangement: t(7;9)(q11.21;p24.1)(chr7:g.62328179::chr9:g.8517959)			0	0	0	0	16
P-0036332-T01-IM6	SOMATIC	PTPRD		9	9	1444584	8499680	IGR: 394Kb before DMRT2(+)	Exon 25 of PTPRD(-)		GRCh37	INVERSION			PTPRD-intragenic	PRECISE	5to5	PTPRD (NM_002839) Rearrangement : chr9:g.1444584_c.2289inv			7055096	82823	103069	0	18
P-0032966-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon3 (NM_032784).	yes	unknown					
P-0034040-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon7 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0036522-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon7 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0044388-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0045531-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0048933-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0050356-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0058811-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0059210-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0060922-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon7 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0034853-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0035372-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0038239-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0046018-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0046861-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0060927-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0064550-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0066749-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0066939-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0069656-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0034063-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0036261-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon7 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0037865-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon7 (NM_001135648) and RSPO3 Exon2 (NM_032784). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: MTMR2-MAML2 fusion. Note: The rearrangement is an in-frame fusion between genes MTMR2 Exon12 (NM_016156) and MAML2 Exon3 (NM_032427).	yes	unknown					
P-0038162-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0045139-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0037180-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0037968-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon13 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0060677-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0074268-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0070347-T01-IM7	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_002844) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0037571-T01-IM6	SOMATIC	PTPRK	RSPO3								GRCh37				PTPRK-RSPO3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: PTPRK-RSPO3 fusion. Note: The rearrangement is an in-frame fusion between genes PTPRK Exon1 (NM_001135648) and RSPO3 Exon2 (NM_032784).	yes	unknown					
P-0013925-T01-IM5	SOMATIC	PTPRS	PTPRS	19	19	5274143	5289206	Intron of PTPRS(-): 67bp after exon 3	5-UTR of PTPRS(-): 3Kb before coding start		GRCh37	INVERSION	9	7	Antisense fusion	PRECISE	5to5	PTPRS (NM_002850) rearrangement: c.-94-2961_c.237+67inv	yes	unknown	15063	3176	2242	0	7
P-0072348-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5273236	5274071	Intron of PTPRS(-):216bp after exon 4	Intron of PTPRS(-):138bp after exon 3		GRCh37	DELETION	0	13	Deletion of 1 exon : out of frame	IMPPRECISE	3to5	PTPRS (NM_002850) rearrangement: c.237+139_c.379+217del	yes	unknown	835	1128	1153	0	14
P-0065201-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5207765	5218200	Intron of PTPRS(-):167bp after exon 37	Intron of PTPRS(-):230bp after exon 25		GRCh37	DUPLICATION	10	25	Duplication of 12 exons : out of frame	PRECISE	5to3	PTPRS (NM_002850) rearrangement: c.4048+231_c.5778+168dup	yes	unknown	10435	22767	30893	0	25
P-0017262-T01-IM6	SOMATIC	PTPRS	FAM227B	19	15	5216740	49718958	Exon 26 of PTPRS(-)	Intron of FAM227B(-):55Kb before exon 12		GRCh37	TRANSLOCATION	10	45	Protein Fusion: mid-exon  {PTPRS:FAM227B}	PRECISE	5to3	PTPRS (NM_00285) - FAM227B (NM_152647) rearrangement: t(15;19)(q21.2;p13.3)(chr15:g.49718958::chr19:g.5216740)	yes	unknown	0	0	0	0	47
P-0005613-T01-IM5	SOMATIC	PTPRS	UNC5D	19	8	5211611	35547181	Exon 24 of PTPRS(-)	Intron of UNC5D(+): 3Kb after exon 7		GRCh37	TRANSLOCATION			Protein fusion: mid-exon (PTPRS-UNC5D)	PRECISE	5to5	PTPRS (NM_002850) - UNC5D (NM_080872) rearrangement : t(8;19)(8p12;19p13.3)(chr8:g.35547181::chr19:g.5211611)			0	0	0	0	127
P-0067779-T02-IM7	SOMATIC	PTPRS	ARID3A	19	19	955513	5225663	Intron of ARID3A(+):5Kb before exon 4	Intron of PTPRS(-):74bp after exon 17		GRCh37	INVERSION			Protein Fusion: out of frame  {PTPRS:ARID3A}	IMPPRECISE	5to5	PTPRS (NM_002850) - ARID3A (NM_005224) rearrangement: c.2494+75:PTPRS_c.694-4579:ARID3Ainv			4270150	165616	81469	0	8
P-0046209-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	2749239	5239049	IGR: 5Kb before SGTA(-)	Exon 13 of PTPRS(-)		GRCh37	INVERSION	10	66	PTPRS-intragenic	PRECISE	5to5	PTPRS (NM_002850) rearrangement: c.1730:PTPRS_chr19:g.2749239inv	yes	unknown	2489810	83502	127083	0	89
P-0042868-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	3619854	5231397	Intron of CACTIN(-):270bp after exon 4	Exon 14 of PTPRS(-)		GRCh37	INVERSION	10	250	PTPRS-intragenic	PRECISE	3to3	PTPRS (NM_002850) rearrangement: c.2079:PTPRS_chr19:g.3619854inv	yes	unknown	1611543	102596	75027	0	250
P-0066848-T01-IM7	SOMATIC	PTPRS	YJU2B	19	19	5258168	13655501	Intron of PTPRS(-):30bp before exon 8	IGR: 203Kb before CCDC130(+)		GRCh37	DELETION	10	45	PTPRS-intragenic	PRECISE	3to5	PTPRS (NM_002850) rearrangement: c.596-30:PTPRS_chr19:g.13655501del	yes	unknown	8397333	253505	430055	0	49
P-0071429-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5172309	5223237	IGR: 33Kb before PTPRS(-)	Exon 18 of PTPRS(-)		GRCh37	DELETION	0	5	PTPRS-intragenic	IMPPRECISE	3to5	PTPRS (NM_002850) rearrangement: c.2566:PTPRS_chr19:g.5172309del	yes	unknown	50928	24458	22267	0	5
P-0016398-T01-IM6	SOMATIC	PTPRS		20	19	44361214	5214669	IGR: 10Kb before SPINT4(+)	Exon 29 of PTPRS(-)		GRCh37	TRANSLOCATION			PTPRS-intragenic	IMPPRECISE	5to5	PTPRS (NM_002850) rearrangement: t(19;20)(p13.3;q13.12)(chr19:g.5214669::chr20:g.44361214)			0	0	0	0	10
P-0030169-T01-IM6	SOMATIC	PTPRS		19	14	5219993	22757521	Exon 22 of PTPRS(-)	IGR: 276Kb before DAD1(-)		GRCh37	TRANSLOCATION			PTPRS-intragenic	PRECISE	3to3	PTPRS (NM_002850) Rearrangement : t(14;19)(q11.2; p13.3)(chr14:g.22757521::chr19:g.5219993)			0	0	0	0	54
P-0047433-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	41424405	41514390	Intron of PTPRT(-):4Kb before exon 3	Intron of PTPRT(-):56bp after exon 2		GRCh37	INVERSION	10	13	Antisense Fusion	PRECISE	5to5	PTPRT (NM_133170) rearrangement: c.214+57_c.215-4299inv	yes	unknown	89985	228	350	0	13
P-0046981-T02-IM6	SOMATIC	PTPRT	PTPRT	20	20	40712676	40730809	Intron of PTPRT(-):645bp after exon 30	Exon 27 of PTPRT(-)		GRCh37	INVERSION	5	5	Antisense Fusion	PRECISE	5to5	PTPRT (NM_133170) rearrangement: c.3726_c.4193+646inv	yes	unknown	18133	5210	6978	0	5
P-0052625-T01-IM6	SOMATIC	PTPRT		20	17	41306417	4359134	Intron of PTPRT(-):88bp after exon 7	Intron of SPNS3(+):3Kb after exon 8		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	PTPRT (NM_133170) rearrangement: t(17;20)(p13.2;q12)(chr17:g.4359134::chr20:g.41306417)			0	0	0	0	14
P-0067224-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	41082319	41101222	Intron of PTPRT(-):5Kb before exon 9	Intron of PTPRT(-):20bp before exon 8		GRCh37	DELETION	10	27	Deletion of 1 exon : in frame	PRECISE	3to5	PTPRT (NM_133170) rearrangement: c.1154-20_c.1451-5350del	yes	unknown	18903	2814	2214	0	27
P-0047174-T02-IM6	SOMATIC	PTPRT	PTPRT	20	20	40719406	40733284	Intron of PTPRT(-):5Kb before exon 29	Exon 26 of PTPRT(-)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	PTPRT (NM_133170) rearrangement: c.3522_c.3904-4913del	yes	unknown	13878	5708	2930	0	8
P-0064418-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	41399992	41636920	Intron of PTPRT(-):82bp after exon 5	Intron of PTPRT(-):122Kb before exon 2		GRCh37	DUPLICATION	10	12	Duplication of 4 exons : out of frame	PRECISE	5to3	PTPRT (NM_133170) rearrangement: c.89-122348_c.684+83dup	yes	unknown	236928	6573	12156	0	12
P-0036850-T01-IM6	SOMATIC	PTPRT	C20orf203	20	20	31231021	40981149	3-UTR of C20orf203(-):7Kb after coding stop	Intron of PTPRT(-):224bp before exon 10		GRCh37	INVERSION			PTPRT-C20orf203 Fusion	PRECISE	3to3	PTPRT (NM_133170) - C20orf203 (NM_182584) rearrangement: c.1561-224:PTPRT_c.*1178-2532:C20orf203inv			9750128	109850	252571	0	12
P-0024225-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	40899116	41729844	Intron of PTPRT(-):23bp before exon 14	Intron of PTPRT(-):88Kb after exon 1		GRCh37	INVERSION	10	15	PTPRT-intragenic	PRECISE	3to3	PTPRT (NM_133170) rearrangement: c.2177-23_c.88+88442inv	yes	unknown	830728	21654	20655	0	18
P-0051758-T01-IM6	SOMATIC	PTPRT	ZFP36L1	20	14	40731110	69102171	Intron of PTPRT(-):173bp before exon 27	IGR: 152Kb before ZFP36L1(-)		GRCh37	TRANSLOCATION	10	18	PTPRT-intragenic	PRECISE	3to3	PTPRT (NM_133170) rearrangement: t(14;20)(q24.1;q12)(chr14:g.69102171::chr20:g.40731110)	yes	unknown	0	0	0	0	18
P-0045005-T01-IM6	SOMATIC	PTPRT	JARID2	20	6	40727119	14960811	Exon 28 of PTPRT(-)	IGR: 285Kb before JARID2(+)		GRCh37	TRANSLOCATION	10	16	PTPRT-intragenic	PRECISE	5to3	PTPRT (NM_133170) rearrangement: t(6;20)(p23;q12)(chr6:g.14960811::chr20:g.40727119)	yes	unknown	0	0	0	0	16
P-0024400-T01-IM6	SOMATIC	PTPRT		20	20	40727033	50196752	Intron of PTPRT(-):27bp after exon 28	IGR: 17Kb before ATP9A(-)		GRCh37	INVERSION			PTPRT-intragenic	PRECISE	5to5	PTPRT (NM_133170) rearrangement: c.3903+28_chr20:g.50196752inv			9469719	51883	36678	0	11
P-0080175-T01-IM7	SOMATIC	PTPRT		20	14	40710660	105955127	Intron of PTPRT(-):3bp before exon 31	Promoter of C14orf80(+):1Kb from tx start		GRCh37	TRANSLOCATION	0	5	Transcript Fusion {C14orf80:PTPRT}	IMPPRECISE	3to3	PTPRT (NM_133170) rearrangement: t(14;20)(q32.33;q12)(chr14:g.105955127::chr20:g.40710660)	yes	unknown	0	0	0	0	5
P-0004835-T01-IM5	SOMATIC	PTRH2	BRIP1	17	17	57784489	59770771	5-UTR of PTRH2(-): 9Kb before coding start	Intron of BRIP1(-): 20bp after exon 18		GRCh37	DELETION	92	102	Transcript fusion (BRIP1-PTRH2)	PRECISE	3to5	BRIP1 (NM_032043) - PTRH2 (NM_016077) rearrangement :  c.2575+20:BRIP1_c.-1+243:PTRH2del	yes	unknown	1986282	40790	158480	0	167
P-0005613-T01-IM5	SOMATIC	PTPRS	ACER1	19	19	5212045	6328337	Exon 23 of PTPRS(-)	Intron of ACER1(-): 5Kb after exon 1		GRCh37	INVERSION			PTRPRS-ACER1 Fusion	PRECISE	3to3	PTRPRS (NM_002850) - ACER1 (NM_133492) rearrangement : c.4986:PTPRS_c.93+5133:ACER1inv			1116292	106252	76236	0	74
P-0044077-T01-IM6	SOMATIC	PXN	MSI1	12	12	120672126	120791126	Intron of PXN(-):10Kb before exon 2	Exon 10 of MSI1(-)		GRCh37	DUPLICATION	10	23	Protein Fusion: mid-exon  {PXN:MSI1}	PRECISE	5to3	PXN (NM_001080855) - MSI1 (NM_002442) rearrangement: c.14-9946:PXN_c.709:MSI1dup	yes	unknown	119000	7973	10591	0	27
P-0050959-T01-IM6	SOMATIC	QARS1	SETD2	3	3	47161927	49133612	Exon 3 of SETD2(-)	Intron of QARS(-):100bp before exon 24		GRCh37	DELETION	10	12	Protein Fusion: mid-exon  {QARS1:SETD2}	PRECISE	3to5	QARS (NM_005051) - SETD2 (NM_014159) rearrangement: c.2278-100:QARS_c.4199:SETD2del	yes	unknown	1971685	18253	24251	0	12
P-0006646-T01-IM5	SOMATIC	RAB11FIP1	FGFR1	8	8	37730293	38275956	Exon 4 of RAB11FIP1(-)	Intron of FGFR1(-): 65bp before exon 9		GRCh37	DUPLICATION	22	12	Protein fusion: mid-exon (RAB11FIP1-FGFR1)	PRECISE	5to3	RAB11FIP1 (NM_001002814) - FGFR1 (NM_001174067) rearrangement : c.2027:RAB11FIP1_c.1378-65:FGFR1dup	yes	unknown	545663	19630	18235	0	12
P-0042168-T01-IM6	SOMATIC	RAB11FIP3	TSC2	16	16	509100	2112208	Intron of RAB11FIP3(+):2Kb before exon 2	Intron of TSC2(+):199bp after exon 12		GRCh37	DELETION	3	5	Protein Fusion: in frame  {RAB11FIP3:TSC2}	PRECISE	3to5	RAB11FIP3 (NM_014700) - TSC2 (NM_000548) rearrangement: c.715-2304:RAB11FIP3_c.1257+199:TSC2del	yes	unknown	1603108	42241	147118	0	5
P-0003390-T01-IM5	SOMATIC	RAB11FIP4	POLE	17	12	29822054	133225853	Intron of RAB11FIP4(+): 23Kb before exon 4	Intron of POLE(-): 39bp after exon 31		GRCh37	TRANSLOCATION	24	11	Protein fusion: in frame (POLE-RAB11FIP4)	PRECISE	5to5		yes	unknown	0	0	0	0	11
P-0062760-T01-IM7	SOMATIC	RAB11FIP4	NF1	17	17	29654614	29770935	Exon 37 of NF1(+)	Intron of RAB11FIP4(+):10Kb after exon 3		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {RAB11FIP4:NF1}	PRECISE	5to3	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) rearrangement: c.336+9795:RAB11FIP4_c.5366:NF1dup	yes	unknown	116321	35657	52289	0	4
P-0067075-T01-IM7	SOMATIC	RAB35	HHAT	12	1	120536971	210551324	Intron of RAB35(-):13bp before exon 4	Intron of HHAT(+):9Kb before exon 3		GRCh37	TRANSLOCATION	10	7	Antisense Fusion	PRECISE	5to3	RAB35 (NM_006861) rearrangement: t(1;12)(q32.2;q24.23)(chr1:g.210551324::chr12:g.120536971)	yes	unknown	0	0	0	0	8
P-0038513-T01-IM6	SOMATIC	RAB35	RAB35	12	12	120536685	120542911	Exon 5 of RAB35(-)	Intron of RAB35(-):1Kb before exon 3		GRCh37	DELETION	10	120	Deletion within transcript : mid-exon	PRECISE	3to5	RAB35 (NM_006861) rearrangement: c.104-1158_c.407del	yes	unknown	6226	5085	3304	0	128
P-0010600-T01-IM5	SOMATIC	RAB35	RAB35	12	12	120552810	120554441	Intron of RAB35(-): 2Kb after exon 1	Exon 1 of RAB35(-)		GRCh37	DELETION	31	19	Deletion within transcript: mid-exon	PRECISE	3to5	RAB35 (NM_006861) rearrangement: c.14_c.52+1593del	yes	unknown	1631	402	109	0	19
P-0018948-T02-IM6	SOMATIC	RAB35	COQ5	12	12	120536831	120947806	Intron of RAB35(-):2bp after exon 4	Intron of COQ5(-):13bp after exon 4		GRCh37	DUPLICATION	10	66	Protein Fusion: out of frame  {RAB35:COQ5}	PRECISE	5to3	RAB35 (NM_006861) - COQ5 (NM_032314) Rearrangement : c.352+3:RAB35_c.681+14:COQ5	yes	unknown	410975	32514	55927	0	68
P-0009556-T01-IM5	SOMATIC	RAB35	SPPL3	12	12	120536480	121212538	Intron of RAB35(-): 135bp after exon 5	Intron of SPPL3(-): 6Kb before exon 7		GRCh37	DUPLICATION	10	5	Protein fusion: out of frame (RAB35-SPPL3)	PRECISE	5to3	RAB35 (NM_006861) - SPPL3(NM_139015) Rearrangement :  c.477+135:RAB35_c.503-5676:SPPL3dup	yes	unknown	676058	13333	13776	0	4
P-0030482-T01-IM6	SOMATIC	RAB35	APOB	12	2	120536768	21445639	Intron of RAB35(-):29bp before exon 5	IGR: 221Kb before APOB(-)		GRCh37	TRANSLOCATION	10	14	RAB35-intragenic	PRECISE	3to3	RAB35 (NM_006861) rearrangement: t(2;12)(p24.1;q24.23)(chr2:g.21445639::chr12:g.120536768)	yes	unknown	0	0	0	0	14
P-0055996-T01-IM6	SOMATIC	RAB35	COL21A1	12	6	120536688	55882945	Exon 5 of RAB35(-)	IGR: 38Kb before COL21A1(-)		GRCh37	TRANSLOCATION	0	10	RAB35-intragenic	IMPPRECISE	3to3	RAB35 (NM_006861) rearrangement: t(6;12)(p12.1;q24.23)(chr6:g.55882945::chr12:g.120536688)	yes	unknown	0	0	0	0	10
P-0060677-T01-IM7	SOMATIC	RAB35		12	12	120541845	120561034	Intron of RAB35(-):92bp before exon 3	IGR: 4Kb before GCN1L1(-)		GRCh37	INVERSION			RAB35-intragenic	PRECISE	3to3	RAB35 (NM_006861) rearrangement: c.104-92:RAB35_chr12:g.120561034inv			19189	5481	4992	0	5
P-0042098-T01-IM6	SOMATIC	RAB3GAP2	AURKA	20	1	54945391	220440226	Exon 9 of AURKA(-)	Intron of RAB3GAP2(-):5Kb after exon 1		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {RAB3GAP2:AURKA}	PRECISE	3to5	RAB3GAP2 (NM_012414) - AURKA (NM_003600) rearrangement: t(1;20)(q41;q13.2)(chr1:g.220440226::chr20:g.54945391)	yes	unknown	0	0	0	0	20
P-0068553-T01-IM7	SOMATIC	RAB40C	PTPRT	20	16	41818103	644226	Intron of PTPRT(-):182bp after exon 1	Intron of RAB40C(+):4Kb after exon 1		GRCh37	TRANSLOCATION	10	10	Protein Fusion: in frame  {RAB40C:PTPRT}	PRECISE	3to3	RAB40C (NM_001172665) - PTPRT (NM_133170) rearrangement: t(16;20)(p13.3;q13.11)(chr16:g.644226::chr20:g.41818103)	yes	unknown	0	0	0	0	10
P-0027685-T01-IM6	SOMATIC	RAB5C	ALK	17	2	40279299	29447944	Intron of RAB5C(-):433bp before exon 5	Intron of ALK(-):382bp after exon 19		GRCh37	TRANSLOCATION	10	49	ALK-RAB5C fusion	PRECISE	3to3	RAB5C (NM_001252039) - ALK (NM_004304) fusion: t(2;17)(p23.2;q21.2)(chr2:g.29447944::chr17:g.40279299)	yes	unknown	0	0	0	0	49
P-0046870-T01-IM6	SOMATIC	RAC1	RAC1	7	7	6429807	6431621	Intron of RAC1(+):2Kb before exon 3	Exon 3 of RAC1(+)		GRCh37	DELETION	8	5	Deletion within transcript : mid-exon	PRECISE	3to5	RAC1 (NM_018890) rearrangement: c.108-1748_c.174del	yes	unknown	1814	306	360	0	6
P-0078536-T01-IM7	SOMATIC	RAC1	RAC1	7	7	6415291	6439763	Intron of RAC1(+):890bp after exon 1	Exon 5 of RAC1(+)		GRCh37	DELETION	10	7	Deletion within transcript : mid-exon	PRECISE	3to5	RAC1 (NM_018890) rearrangement: c.35+890_c.289del	yes	unknown	24472	3347	4505	0	8
P-0070381-T02-IM7	SOMATIC	RAC1	USP42	7	7	6173486	6414516	Intron of USP42(+):2Kb before exon 4	Intron of RAC1(+):115bp after exon 1		GRCh37	DUPLICATION	10	19	Protein Fusion: out of frame  {RAC1:USP42}	PRECISE	5to3	RAC1 (NM_018890) - USP42 (NM_032172) rearrangement: c.35+115:RAC1_c.443-1986:USP42dup	yes	unknown	241030	1382	4685	0	21
P-0057262-T01-IM6	SOMATIC	RAC1		9	7	118082958	6431625	5-UTR of DEC1(+):56Kb before coding start	Exon 3 of RAC1(+)		GRCh37	TRANSLOCATION			RAC1-intragenic	PRECISE	5to5	RAC1 (NM_018890) rearrangement: t(7;9)(p22.1;q33.1)(chr7:g.6431625::chr9:g.118082958)			0	0	0	0	61
P-0046623-T01-IM6	SOMATIC	RAC2	RAC2	22	22	36088023	37629276	IGR: 26Kb before APOL5(+)	Intron of RAC2(-):318bp before exon 3		GRCh37	INVERSION	10	9	RAC2-intragenic	PRECISE	3to3	RAC2 (NM_002872) rearrangement: c.108-318:RAC2_chr22:g.36088023inv	yes	unknown	1541253	12408	15401	0	11
P-0030417-T01-IM6	SOMATIC	RAC2		22	22	37176369	37627991	IGR: 8Kb before IFT27(-)	Exon 4 of RAC2(-)		GRCh37	INVERSION			RAC2-intragenic	PRECISE	5to5	RAC2 (NM_002872) rearrangement: c.269:RAC2_chr22:g.37176369inv			451622	5566	7228	0	5
P-0005261-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117875348	117887325	Intron of RAD21(-): 21bp after exon 3	Promoter of RAD21(-): 220bp from tx start		GRCh37	INVERSION	30	24	Antisense fusion	PRECISE	5to5	RAD21 (NM_006265) Rearrangement: c.-508_c.274+21inv	yes	unknown	11977	3843	3816	0	24
P-0010995-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117877701	117878869	Intron of RAD21(-): 1Kb after exon 2	Exon 2 of RAD21(-)		GRCh37	INVERSION	23	14	Antisense fusion	PRECISE	5to5	RAD21 (NM_006265) rearrangement: c.100_c.144+1124inv	yes	unknown	1168	2059	2357	0	10
P-0070716-T01-IM7	SOMATIC	RAD21	RAD21	8	8	93723610	117878756	Promoter of FLJ46284(-):2Kb from tx start	Intron of RAD21(-):68bp after exon 2		GRCh37	INVERSION	10	140	Antisense Fusion	PRECISE	5to5	RAD21 (NM_006265) rearrangement: c.144+69:RAD21_chr8:g.93723610inv	yes	unknown	24155146	96958	229540	0	162
P-0070882-T02-IM7	SOMATIC	RAD21	RAD21	8	8	117865094	117866631	Intron of RAD21(-):147bp before exon 10	Exon 9 of RAD21(-)		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	RAD21 (NM_006265) rearrangement: c.1014_c.1162-147del	yes	unknown	1537	559	1195	0	10
P-0011343-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117868887	117873952	Exon 7 of RAD21(-)	Intron of RAD21(-): 128bp after exon 4		GRCh37	DUPLICATION	6	5	Duplication within transcript: mid-exon	PRECISE	5to3	RAD21 (NM_006265) rearrangement: c.374+128_c.812dup	yes	unknown	5065	6668	5785	0	5
P-0009914-T01-IM5	SOMATIC	RAD21	FGF12	8	3	117866571	191588402	Exon 9 of RAD21(-)	IGR: 271Kb before FGF12(-)		GRCh37	TRANSLOCATION	44	33	FGF12-RAD21 fusion	PRECISE	5to5	RAD21 (NM_006265) - FGF12 (NM_021032) rearrangement: t(3;8)(q28;q24.11)(chr3:g.191588402::chr8:g.117866571)	yes	unknown	0	0	0	0	33
P-0049065-T01-IM6	SOMATIC	RAD21	EIF3H	8	8	117750976	117870626	Intron of EIF3H(-):13Kb before exon 2	Exon 5 of RAD21(-)		GRCh37	DELETION	10	9	Protein Fusion: mid-exon  {RAD21:EIF3H}	PRECISE	3to5	RAD21 (NM_006265) - EIF3H (NM_003756) rearrangement: c.446:RAD21_c.133-12565:EIF3Hdel	yes	unknown	119650	9376	12156	0	9
P-0020482-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117833120	117864336	IGR: 25Kb before RAD21(-)	Intron of RAD21(-):1bp before exon 11		GRCh37	DELETION	10	7	RAD21-intragenic	PRECISE	3to5	RAD21 (NM_006265) Rearrangement : c.1322-1:RAD21_chr8:g.117833120del	yes	unknown	31216	6824	7879	0	8
P-0057743-T01-IM6	SOMATIC	RAD21	SLC30A8	8	8	117866604	118086446	Exon 9 of RAD21(-)	5-UTR of SLC30A8(+):73Kb before coding start		GRCh37	DELETION	9	11	RAD21-intragenic	PRECISE	3to5	RAD21 (NM_006265) rearrangement: c.1041:RAD21_chr8:g.118086446del	yes	unknown	219842	8332	11695	0	11
P-0059084-T01-IM7	SOMATIC	RAD21	MIR3610	8	8	117878860	117896062	Exon 2 of RAD21(-)	IGR: 9Kb before MIR3610(-)		GRCh37	DELETION	10	10	RAD21-intragenic	PRECISE	3to5	RAD21 (NM_006265) rearrangement: c.109:RAD21_chr8:g.117896062del	yes	unknown	17202	686	1448	0	10
P-0028516-T01-IM6	SOMATIC	RAD21		8	1	117870582	225658395	Intron of RAD21(-):8bp after exon 5	IGR: 16Kb before ENAH(-)		GRCh37	TRANSLOCATION			RAD21-intragenic	PRECISE	5to5	RAD21 (NM_006265) rearrangement: t(1;8)(q42.11;q24.11)(chr1:g.225658395::chr8:g.117870582)			0	0	0	0	18
P-0034394-T01-IM6	SOMATIC	RAD21		8	8	83572326	117866665	IGR: 744Kb before LINC01419(+)	Exon 9 of RAD21(-)		GRCh37	INVERSION			RAD21-intragenic	PRECISE	3to3	RAD21 (NM_006265) rearrangement: c.980:RAD21_chr8:g.83572326inv			34294339	52375	62182	0	102
P-0059585-T01-IM7	SOMATIC	RAD21		8	8	117873202	117874086	Intron of RAD21(-):877bp after exon 4	Exon 4 of RAD21(-)		GRCh37	INVERSION			RAD21-intragenic	PRECISE	3to3	RAD21 (NM_006265) rearrangement: c.368_c.374+878inv			884	352	342	0	20
P-0036478-T01-IM6	SOMATIC	RAD21	RSPO2								GRCh37				RAD21-RSPO2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: RAD21-RSPO2 fusion. Note: The rearrangement is an in-frame fusion between genes RAD21 Exon1 (NM_006265) and RSPO2 Exon2 (NM_178565).	yes	unknown					
P-0054292-T01-IM6	SOMATIC	RAD50	RAD50	5	5	131939079	131939825	Exon 14 of RAD50(+)	Intron of RAD50(+):87bp after exon 15		GRCh37	DUPLICATION	10	50	Duplication within transcript : mid-exon	PRECISE	5to3	RAD50 (NM_005732) rearrangement: c.2295_c.2524+87dup	yes	unknown	746	1498	2073	0	50
P-0075480-T01-IM7	SOMATIC	RAD50	FSTL4	5	5	131925430	132808817	Exon 9 of RAD50(+)	Intron of FSTL4(-):72Kb before exon 4		GRCh37	INVERSION	10	23	Protein Fusion: mid-exon  {RAD50:FSTL4}	PRECISE	3to3	RAD50 (NM_005732) - FSTL4 (NM_015082) rearrangement: c.1353:RAD50_c.161-72139:FSTL4inv	yes	unknown	883387	12316	17112	0	23
P-0069724-T01-IM7	SOMATIC	RAD50	RAD50	5	5	55816224	131973694	Intron of LOC101928448(-):6Kb before exon 5	Intron of RAD50(+):78bp before exon 23		GRCh37	DELETION	10	14	RAD50-intragenic	PRECISE	3to5	RAD50 (NM_005732) rearrangement: c.3476-79:RAD50_chr5:g.55816224del	yes	unknown	76157470	434275	491180	0	16
P-0070164-T01-IM7	SOMATIC	RAD50	RAD50	18	5	49315190	131939765	IGR: 397Kb before LOC100287225(+)	Intron of RAD50(+):27bp after exon 15		GRCh37	TRANSLOCATION	10	6	RAD50-intragenic	PRECISE	3to5	RAD50 (NM_005732) rearrangement: t(5;18)(q31.1;q21.2)(chr5:g.131939765::chr18:g.49315190)	yes	unknown	0	0	0	0	6
P-0009109-T01-IM5	SOMATIC	RAD50		5	5	131815508	131939130	IGR: 2Kb before IRF1(-)	Exon 14 of RAD50(+)		GRCh37	DUPLICATION			RAD50-intragenic	PRECISE	5to3	RAD50 (NM_005732) rearrangement: chr5:g.131815508_c.2346:RAD50dup			123622	16410	17082	0	12
P-0032828-T01-IM6	SOMATIC	RAD50		5	5	131915115	132029280	Exon 4 of RAD50(+)	3-UTR of KIF3A(-):3Kb after coding stop		GRCh37	DELETION			RAD50-intragenic	PRECISE	3to5	RAD50 (NM_005732) rearrangement: c.472:RAD50_chr5:g.132029280del			114165	20642	16145	0	51
P-0038436-T01-IM6	SOMATIC	RAD51		15	1	41021062	220264928	Intron of RAD51(+):40bp after exon 7	5-UTR of RNU5F-1(+):28Kb before coding start		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to3	RAD51 (NM_002875) rearrangement: t(1,15)(q41;q15.1)(chr1:g.220264928::chr15:g.41021062)			0	0	0	0	50
P-0044122-T01-IM6	SOMATIC	RAD51	RAD51	15	15	40878263	40998375	IGR: 8Kb before CASC5(+)	Exon 4 of RAD51(+)		GRCh37	DELETION	4	2	RAD51-intragenic	PRECISE	3to5	RAD51 (NM_002875) rearrangement: c.226:RAD51_chr15:g.40878263del	yes	unknown	120112	4055	4881	0	2
P-0057275-T01-IM6	SOMATIC	RAD51		15	15	41001183	41001965	Intron of RAD51(+):39bp before exon 5	Intron of RAD51(+):651bp after exon 5		GRCh37	INVERSION			RAD51-intragenic	PRECISE	5to5	RAD51 (NM_002875) rearrangement: c.344-40_c.435+651inv			782	808	1343	0	26
P-0018245-T01-IM6	SOMATIC	RAD51B		14	14	68758624	68760491	Exon 8 of RAD51B(+)	Intron of RAD51B(+):2Kb after exon 8		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	RAD51B (NM_133509) rearrangement: c.780_c.853+1794inv			1867	559	860	0	7
P-0021826-T01-IM6	SOMATIC	RAD51B		14	14	68753480	68963870	Intron of RAD51B(+):5Kb before exon 8	Intron of RAD51B(+):29Kb after exon 10		GRCh37	DELETION			Deletion of 3 exons : out of frame	PRECISE	3to5	RAD51B (NM_133509) rearrangement: c.757-5121_c.1036+28903del			210390	4882	4332	0	9
P-0030823-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68347600	68353996	Intron of RAD51B(+):5Kb before exon 6	Intron of RAD51B(+):75bp after exon 7		GRCh37	DUPLICATION	10	29	Duplication of 2 exons : out of frame	PRECISE	5to3	RAD51B (NM_133509) rearrangement: c.453-4986_c.756+75dup	yes	unknown	6396	2088	3645	0	31
P-0068605-T01-IM7	SOMATIC	RAD51B	RAD51B	14	14	68595074	68944441	Intron of RAD51B(+):164Kb before exon 8	Intron of RAD51B(+):9Kb after exon 10		GRCh37	DUPLICATION	10	23	Duplication of 3 exons : out of frame	PRECISE	5to3	RAD51B (NM_133509) rearrangement: c.757-163527_c.1036+9474dup	yes	unknown	349367	4649	6737	0	24
P-0022996-T01-IM6	SOMATIC	RAD51B		14	14	68758565	68959757	Intron of RAD51B(+):35bp before exon 8	Intron of RAD51B(+):25Kb after exon 10		GRCh37	DUPLICATION			Duplication of 3 exons : out of frame	IMPPRECISE	5to3	RAD51B (NM_133509) rearrangement: c.757-36_c.1036+24790dup			201192	4465	8043	0	8
P-0065741-T01-IM7	SOMATIC	RAD51B	RAD51B	14	14	68282363	68878164	Intron of ZFYVE26(-):123bp after exon 2	Exon 9 of RAD51B(+)		GRCh37	DELETION	10	37	RAD51B-intragenic	PRECISE	3to5	RAD51B (NM_133509) rearrangement: c.877:RAD51B_chr14:g.68282363del	yes	unknown	595801	10932	9314	0	38
P-0026500-T01-IM6	SOMATIC	RAD51B		20	14	37730040	68290336	IGR: 112Kb before LOC339568(-)	Exon 2 of RAD51B(+)		GRCh37	TRANSLOCATION			RAD51B-intragenic	PRECISE	5to3	RAD51B (NM_133509) Rearrangement : t(14,20)(q24.2,q12)(chr14:g.68290336::chr20:g.37730040)			0	0	0	0	65
P-0026831-T01-IM6	SOMATIC	RAD51B		14	14	69061111	69090674	Intron of RAD51B(+):90bp before exon 11	IGR: 164Kb before ZFP36L1(-)		GRCh37	DELETION			RAD51B-intragenic	PRECISE	3to5	RAD51B (NM_133509) rearrangement: c.1037-91C:RAD51B_chr14:g.69090674del			29563	857	1393	0	2
P-0031996-T01-IM6	SOMATIC	RAD51B		14	14	68301796	68302761	Exon 4 of RAD51B(+)	Intron of RAD51B(+):848bp after exon 4		GRCh37	INVERSION			RAD51B-intragenic	PRECISE	5to5	RAD51B (NM_133509) rearrangement: c.199-1_c.315+848del			965	724	1230	0	15
P-0003353-T01-IM5	SOMATIC	RAD51C	ABCA8	17	17	56769910	66817527	Promoter of RAD51C(+): 53bp from tx start	IGR: 46Kb before ABCA8(-)		GRCh37	INVERSION	16	14	ABCA8-RAD51C fusion	PRECISE	5to5		yes	unknown	10047617	80058	106455	0	14
P-0012122-T01-IM5	SOMATIC	RAD51C	BCAS3	17	17	56809953	58779931	Intron of RAD51C(+): 48bp after exon 8	Intron of BCAS3(+): 7Kb before exon 5		GRCh37	INVERSION	31	23	Antisense fusion	PRECISE	3to3	RAD51C (NM_058216) - BCAS3 (NM_001099432) Rearrangement : c.1026+48:RAD51C_c.215-6649:BCAS3inv	yes	unknown	1969978	37233	58614	0	23
P-0047433-T01-IM6	SOMATIC	RAD51C	RAD51C	17	17	56798033	56809751	Intron of RAD51C(+):73bp before exon 6	Intron of RAD51C(+):93bp before exon 8		GRCh37	DUPLICATION	7	9	Duplication of 2 exons : out of frame	PRECISE	5to3	RAD51C (NM_058216) rearrangement: c.838-74_c.966-94dup	yes	unknown	11718	1349	3232	0	9
P-0009325-T02-IM5	SOMATIC	RAD51C	DHX40	17	17	56809882	57680376	Exon 8 of RAD51C(+)	Intron of DHX40(+): 399bp after exon 15		GRCh37	DELETION	47	35	Protein fusion: mid-exon (RAD51C-DHX40)	PRECISE	3to5	RAD51C (NM_058216) - DHX40 (NM_024612) rearrangement: c.1003:RAD51C_c.1901+399:DHX40del	yes	unknown	870494	3021	3146	0	33
P-0007014-T01-IM5	SOMATIC	RAD51C		20	17	50920486	56809889	IGR: 153Kb before ZFP64(-)	Exon 8 of RAD51C(+)		GRCh37	TRANSLOCATION			RAD51C-intragenic	PRECISE	3to5	RAD51C (NM_058216) rearrangement: t(17;20)(q22;q13.2)(chr17:g.56809889::chr20:g.50920486)			0	0	0	0	102
P-0057776-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	33428037	33435735	Exon 7 of RAD51D(-)	Intron of RAD51D(-):2Kb before exon 3		GRCh37	DELETION	4	3	Deletion within transcript : mid-exon	PRECISE	3to5	RAD51D (NM_133629) rearrangement: c.145-2235_c.586del	yes	unknown	7698	13490	6815	0	3
P-0055657-T01-IM6	SOMATIC	RAD51D	KCNJ2	17	17	33433826	68290179	Intron of RAD51D(-):326bp before exon 3	IGR: 125Kb before KCNJ2(+)		GRCh37	INVERSION	0	7	RAD51D-intragenic	IMPPRECISE	5to5	RAD51D (NM_133629) rearrangement: c.145-326:RAD51D_chr17:g.68290179inv	yes	unknown	34856353	593801	716689	0	9
P-0045313-T01-IM6	SOMATIC	RAD52	RAD52	18	12	62012153	1025842	5-UTR of LOC284294(+):79Kb before coding start	Exon 8 of RAD52(-)		GRCh37	TRANSLOCATION	10	131	Antisense Fusion	PRECISE	3to5	RAD52 (NM_134424) rearrangement: t(12;18)(p13.33;q22.1)(chr12:g.1025842::chr18:g.62012153)	yes	unknown	0	0	0	0	134
P-0022509-T01-IM6	SOMATIC	RAD52		12	12	1036447	1048185	Intron of RAD52(-):18bp before exon 6	5-UTR of RAD52(-):26Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	RAD52 (NM_134424) Rearrangement : c.-18-5943_c.349-18del			11738	7272	5259	0	40
P-0046755-T01-IM6	SOMATIC	RAD52	LINC02398	12	12	1039377	20234604	Intron of RAD52(-):67bp before exon 4	5-UTR of LOC100506393(+):17Kb before coding start		GRCh37	INVERSION	10	73	Transcript Fusion {LOC100506393:RAD52}	PRECISE	3to3	RAD52 (NM_134424) rearrangement: c.187-67:RAD52_chr12:g.20234604inv	yes	unknown	19195227	245467	133999	0	69
P-0071955-T01-IM7	SOMATIC	RAD54L	RAD54L	7	1	105671079	46743936	Intron of CDHR3(+):158bp before exon 18	Exon 19 of RAD54L(+)		GRCh37	TRANSLOCATION	10	17	Antisense Fusion	PRECISE	3to3	RAD54L (NM_001142548) rearrangement: t(1;7)(p34.1;q22.3)(chr1:g.46743936::chr7:g.105671079)	yes	unknown	0	0	0	0	17
P-0022156-T01-IM6	SOMATIC	RAD54L		1	1	46731125	46733203	Intron of RAD54L(+):2Kb before exon 10	Exon 10 of RAD54L(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	RAD54L (NM_001142548) rearrangement: c.892-2006_c.964del			2078	825	221	0	53
P-0024524-T01-IM6	SOMATIC	RAD54L	AGBL4	1	1	46738343	49003235	Exon 13 of RAD54L(+)	Intron of AGBL4(-):2Kb after exon 12		GRCh37	INVERSION	10	83	Protein Fusion: mid-exon  {AGBL4:RAD54L}	PRECISE	5to5	AGBL4 (NM_032785) - RAD54L (NM_001142548) rearrangement: c.1364+2079:AGBL4_c.1245-1:RAD54Linv	yes	unknown	2264892	11169	18297	0	94
P-0028377-T01-IM6	SOMATIC	RAD54L		1	1	46736749	213770090	Intron of RAD54L(+):292bp after exon 11	IGR: 328Kb before LINC00538(+)		GRCh37	INVERSION			RAD54L-intragenic	IMPPRECISE	3to3	RAD54L (NM_001142548) rearrangement: c.1169+292:RAD54L_chr1:g.213770090inv			167033341	570071	727087	0	7
P-0045717-T01-IM6	SOMATIC	RAD54L		1	1	46733272	60351411	Exon 10 of RAD54L(+)	IGR: 8Kb before CYP2J2(-)		GRCh37	INVERSION			RAD54L-intragenic	PRECISE	3to3	RAD54L (NM_001142548) rearrangement: c.1033:RAD54L_chr1:g.60351411inv			13618139	32201	32010	0	41
P-0054910-T01-IM6	SOMATIC	RAF1	TBL1XR1	3	3	12627098	176819498	Intron of RAF1(-):81bp after exon 14	5-UTR of TBL1XR1(-):76Kb before coding start		GRCh37	INVERSION	0	10	Antisense Fusion	IMPPRECISE	5to5	RAF1 (NM_002880) rearrangement: c.1536+82:RAF1_chr3:g.176819498inv	yes	unknown	164192400	837551	648809	0	10
P-0068453-T02-IM7	SOMATIC	RAF1	RAF1	3	3	12627289	12697793	Exon 14 of RAF1(-)	5-UTR of RAF1(-):72Kb before coding start		GRCh37	DELETION	8	6	Deletion within transcript : mid-exon	PRECISE	3to5	RAF1 (NM_002880) rearrangement: c.1427:RAF1_chr3:g.12697793del	yes	unknown	70504	14668	21457	0	6
P-0070624-T01-IM7	SOMATIC	RAF1	CAND2	3	3	12641622	12868441	Intron of RAF1(-):28bp after exon 9	Intron of CAND2(+):497bp before exon 11		GRCh37	INVERSION	10	54	Protein Fusion: in frame  {RAF1:CAND2}	PRECISE	5to5	RAF1 (NM_002880) - CAND2 (NM_001162499) rearrangement: c.990+29:RAF1_c.3211-498:CAND2inv	yes	unknown	226819	6512	13565	0	60
P-0039112-T01-IM6	SOMATIC	RAF1	PPP4R2	3	3	12641931	73058596	Intron of RAF1(-):17bp before exon 8	Intron of PPP4R2(+):11Kb after exon 2		GRCh37	INVERSION	6	2	Protein Fusion: out of frame  {RAF1:PPP4R2}	PRECISE	5to5	RAF1 (NM_002880) - PPP4R2 (NM_174907) rearrangement: c.835-17:RAF1_c.116+11287:PPP4R2inv	yes	unknown	60416665	341574	376037	0	2
P-0073984-T01-IM7	SOMATIC	RAF1		3	3	12650648	110606940	Intron of RAF1(-):83bp after exon 4	IGR: 157Kb before PVRL3-AS1(-)		GRCh37	INVERSION			RAF1-intragenic	PRECISE	5to5	RAF1 (NM_002880) rearrangement: c.423+84:RAF1_chr3:g.110606940inv			97956292	742744	974156	0	15
P-0066085-T01-IM7	SOMATIC	RAF1	HACL1	3	3	12642062	15600617	Intron of RAF1(-):148bp before exon 8	Promoter of HACL1(-):2Kb from tx start		GRCh37	DELETION	10	95	Transcript Fusion {HACL1:RAF1}	PRECISE	3to5	RAF1 (NM_002880) rearrangement: c.835-148:RAF1_chr3:g.15600617del	yes	unknown	2958555	22876	24007	0	103
P-0006137-T01-IM5	SOMATIC	RARA	APPBP2	17	17	38508602	58580489	Exon 6 of RARA(+)	Intron of APPBP2(-): 3Kb before exon 2		GRCh37	DELETION	127	48	Antisense fusion	PRECISE	3to5	RARA (NM_000964) - APPBP2 (NM_0063) rearrangement: c.650:RARA_c.139-2641:APPBP2del	yes	unknown	20071887	215686	180402	0	48
P-0048011-T01-IM6	SOMATIC	RARA	RNF213	17	17	38487931	78357317	Intron of RARA(+):283bp after exon 2	Intron of RNF213(+):159bp before exon 59		GRCh37	INVERSION	5	4	Antisense Fusion	PRECISE	3to3	RARA (NM_000964) rearrangement: c.178+283:RARA_chr17:g.78357317inv	yes	unknown	39869386	432134	865941	0	4
P-0056013-T01-IM6	SOMATIC	RARA	SPAG9	17	17	38487688	49044082	Intron of RARA(+):40bp after exon 2	Intron of SPAG9(-):334bp before exon 29		GRCh37	DELETION	10	375	Antisense Fusion	PRECISE	3to5	RARA (NM_000964) rearrangement: c.178+40:RARA_chr17:g.49044082del	yes	unknown	10556394	295418	284030	0	1628
P-0015291-T01-IM6	SOMATIC	RARA	SMURF2	17	17	38499226	62585108	Intron of RARA(+): 107bp after exon 1	Intron of SMURF2(-): 2Kb after exon 5		GRCh37	INVERSION	47	55	Protein fusion: in frame (RARA-SMURF2)	PRECISE	3to3	RARA (NM_000964) - SMURF2 (NM_022739) rearrangement: c.179-5342:RARA_c.400+2094:SMURF2inv	yes	unknown	24085882	498799	530194	0	50
P-0018577-T01-IM6	SOMATIC	RARA	GSDMC	17	8	38499355	130776535	Intron of RARA(+):5Kb before exon 3	Intron of GSDMC(-):1Kb after exon 4		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {RARA:GSDMC}	PRECISE	3to3	RARA (NM_000964) - GSDMC (NM_031415) rearrangement: t(8;17)(q24.21;q21.2)(chr8:g.130776535::chr17:g.38499355)			0	0	0	0	7
P-0065029-T02-IM7	SOMATIC	RARA	PHB1	17	17	38511575	47470878	Exon 8 of RARA(+)	IGR: 11Kb before PHB(-)		GRCh37	INVERSION	10	3	RARA-intragenic	PRECISE	5to5	RARA (NM_000964) rearrangement: c.1073:RARA_chr17:g.47470878inv	yes	unknown	8959303	228309	340406	0	3
P-0017067-T01-IM6	SOMATIC	RARA		17	17	38504641	41463829	Exon 3 of RARA(+)	3-UTR of LINC00910(-):2Kb after coding stop		GRCh37	INVERSION			RARA-intragenic	PRECISE	3to3	RARA (NM_000964) Rearrangement : c.252:RARA_chr17:g.41463829inv			2959188	141359	242392	0	11
P-0035240-T01-IM6	SOMATIC	RARA		17	17	38506231	38525291	Intron of RARA(+):54bp after exon 4	IGR: 8Kb before GJD3(-)		GRCh37	DELETION			RARA-intragenic	PRECISE	3to5	RARA (NM_000964) rearrangement: c.469+54_chr17:g.38525291del			19060	9279	7022	0	21
P-0055374-T01-IM6	SOMATIC	RARA	SMARCE1	17	17	38510797	38783681	Intron of RARA(+):39bp after exon 7	Promoter of SMARCE1(-):294bp from tx start		GRCh37	INVERSION	10	25	Transcript Fusion {RARA:SMARCE1}	PRECISE	3to3	RARA (NM_000964) rearrangement: c.1012+39:RARA_chr17:g.38783681inv	yes	unknown	272884	6071	8523	0	25
P-0035021-T01-IM6	SOMATIC	RASA1	SQSTM1	5	5	86642655	179255094	Intron of RASA1(+):114bp after exon 7	Intron of SQSTM1(+):3Kb after exon 6		GRCh37	INVERSION	10	6	Antisense Fusion	PRECISE	3to3	RASA1 (NM_002890) rearrangement: c.1102+114:RASA1_chr5:g.179255094inv	yes	unknown	92612439	364345	227252	0	6
P-0049006-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86676253	86686548	Intron of RASA1(+):72bp before exon 20	Intron of RASA1(+):68bp before exon 25		GRCh37	DELETION	10	15	Deletion of 5 exons : out of frame	PRECISE	3to5	RASA1 (NM_002890) rearrangement: c.2604-73_c.3061-69del	yes	unknown	10295	3623	4458	0	15
P-0009450-T02-IM6	SOMATIC	RASA1	RASA1	5	5	86628663	86642512	Intron of RASA1(+):204bp after exon 3	Exon 7 of RASA1(+)		GRCh37	DELETION	10	34	Deletion within transcript : mid-exon	PRECISE	3to5	RASA1 (NM_002890) Rearrangement : c.828+204_c.1073del	yes	unknown	13849	2880	3124	0	34
P-0013790-T01-IM5	SOMATIC	RASA1	RASA1	5	5	86654086	86658439	Intron of RASA1(+): 4Kb before exon 10	Exon 10 of RASA1(+)		GRCh37	DELETION	54	41	Deletion within transcript: mid-exon	PRECISE	3to5	RASA1 (NM_002890) Rearrangement : c.1333-4282_1404del	yes	unknown	4353	1200	1222	0	38
P-0010406-T01-IM5	SOMATIC	RASA1	RASA1	5	5	86679456	86685401	Intron of RASA1(+): 74bp before exon 21	Intron of RASA1(+): 57bp after exon 24		GRCh37	DUPLICATION	13	8	Duplication of 4 exons: out of frame	PRECISE	5to3	RASA1 (NM_002890) Rearrangement : c.2691-74_ 3060+57dup	yes	unknown	5945	4834	4064	0	8
P-0023310-T01-IM6	SOMATIC	RASA1	KIAA0825	5	5	86685302	93855388	Exon 24 of RASA1(+)	Intron of KIAA0825(-):564bp after exon 5		GRCh37	INVERSION	10	27	Protein Fusion: mid-exon  {RASA1:KIAA0825}	PRECISE	3to3	RASA1 (NM_002890) - KIAA0825 (NM_001145678) rearrangement: c.3018:RASA1_c.970+565:KIAA0825inv	yes	unknown	7170086	9234	9981	0	27
P-0024349-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86560571	86564719	IGR: 3Kb before RASA1(+)	Exon 1 of RASA1(+)		GRCh37	DELETION	10	50	RASA1-intragenic	PRECISE	3to5	RASA1 (NM_002890) rearrangement: c.-3698_c.451del	yes	unknown	4148	3156	1541	0	59
P-0048925-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86547885	86674186	IGR: 16Kb before RASA1(+)	Intron of RASA1(+):26bp before exon 18		GRCh37	DELETION	6	4	RASA1-intragenic	PRECISE	3to5	RASA1 (NM_002890) rearrangement: c.2345-27:RASA1_chr5:g.86547885del	yes	unknown	126301	17199	31597	0	4
P-0067780-T02-IM7	SOMATIC	RASA1	LINC01202	5	5	86659290	161387040	Exon 11 of RASA1(+)	3-UTR of LINC01202(-):41Kb after coding stop		GRCh37	DELETION	10	78	RASA1-intragenic	PRECISE	3to5	RASA1 (NM_002890) rearrangement: c.1579:RASA1_chr5:g.161387040del	yes	unknown	74727750	320968	575231	0	80
P-0017233-T01-IM6	SOMATIC	RASA1		5	5	78016439	86626760	IGR: 57Kb before ARSB(-)	Intron of RASA1(+):404bp before exon 2		GRCh37	INVERSION			RASA1-intragenic	PRECISE	5to5	RASA1 (NM_002890) rearrangement : g.78016439_c.540-405:RASA1inv			8610321	37504	42528	0	6
P-0028938-T01-IM6	SOMATIC	RASA1		5	5	42683483	86681157	Intron of GHR(+):6Kb before exon 3	Exon 22 of RASA1(+)		GRCh37	INVERSION			RASA1-intragenic	PRECISE	5to5	RASA1 (NM_002890) rearrangement: c.2798:RASA1_chr5:g.42683483inv			43997674	103997	236846	0	3
P-0044335-T01-IM6	SOMATIC	RASA1		5	5	82942092	86672065	Intron of HAPLN1(-):2Kb before exon 4	Intron of RASA1(+):144bp before exon 16		GRCh37	DELETION			RASA1-intragenic	PRECISE	3to5	RASA1 (NM_002890) rearrangement: c.2012-145:RASA1_chr5:g.82942092del			3729973	12327	12128	0	15
P-0019364-T01-IM6	SOMATIC	RASAL2	IKBKE	1	1	178420525	206652369	Intron of RASAL2(+):180bp before exon 10	Exon 10 of IKBKE(+)		GRCh37	DELETION	10	11	Protein Fusion: mid-exon  {RASAL2:IKBKE}	PRECISE	3to5	RASAL2 (NM_170692) - IKBKE(NM_014002) Rearrangement : c.1628-181:RASAL2_c.1076:IKBKEdel	yes	unknown	28231844	87746	89266	0	11
P-0041866-T01-IM6	SOMATIC	RASAL3	AXL	19	19	15563614	41754326	Exon 16 of RASAL3(-)	Intron of AXL(+):92bp before exon 13		GRCh37	INVERSION	0	12	Protein Fusion: mid-exon  {RASAL3:AXL}	IMPPRECISE	5to5	RASAL3 (NM_022904) - AXL (NM_021913) rearrangement: c.2683:RASAL3_c.1538-93:AXLinv	yes	unknown	26190712	415702	471781	0	12
P-0053739-T01-IM6	SOMATIC	RASGRP2	RELA	11	11	64498658	65429621	Intron of RASGRP2(-):992bp before exon 13	Intron of RELA(-):28bp after exon 2		GRCh37	DUPLICATION	10	6	Protein Fusion: out of frame  {RASGRP2:RELA}	PRECISE	5to3	RASGRP2 (NM_001098670) - RELA (NM_021975) rearrangement: c.1413-992:RASGRP2_c.34+29:RELAdup	yes	unknown	930963	26876	55112	0	8
P-0026289-T01-IM6	SOMATIC	RB1	RB1	13	13	48947686	48951752	Intron of RB1(+):58bp after exon 12	Intron of RB1(+):582bp after exon 13		GRCh37	DELETION	9	5	Deletion of 1 exon : in frame	PRECISE	3to5	RB1 (NM_000321) Rearrangement: c.1215+58_c.1332+582	yes	unknown	4066	535	738	0	5
P-0016809-T02-IM6	SOMATIC	RB1	RB1	13	13	48952621	48954145	Intron of RB1(+):1Kb before exon 14	Intron of RB1(+):43bp before exon 15		GRCh37	DELETION	10	11	Deletion of 1 exon : in frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.1333-1109_c.1390-44del.	yes	unknown	1524	373	135	0	12
P-0045670-T01-IM6	SOMATIC	RB1	RB1	13	13	49038106	49039264	Intron of RB1(+):135bp after exon 21	Intron of RB1(+):17bp after exon 22		GRCh37	DELETION	0	3	Deletion of 1 exon : in frame	IMPPRECISE	3to5	RB1 (NM_000321) rearrangement: c.2211+135_c.2325+17del	yes	unknown	1158	845	632	0	3
P-0029152-T01-IM6	SOMATIC	RB1	RB1	13	13	48878229	48883288	Intron of RB1(+):44bp after exon 1	Intron of RB1(+):2Kb after exon 2		GRCh37	DELETION	10	36	Deletion of 1 exon : out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.137+44_c.264+1746del	yes	unknown	5059	681	838	0	36
P-0033078-T01-IM6	SOMATIC	RB1	RB1	13	13	49003859	49030213	Intron of RB1(+):23Kb before exon 18	Intron of RB1(+):126bp before exon 19		GRCh37	DELETION	10	51	Deletion of 1 exon : out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.1696-23270_c.1815-127del	yes	unknown	26354	1778	552	0	52
P-0063799-T01-IM7	SOMATIC	RB1	RB1	13	13	49026737	49030270	Intron of RB1(+):391bp before exon 18	Intron of RB1(+):69bp before exon 19		GRCh37	DELETION	10	20	Deletion of 1 exon : out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.1696-392_c.1815-70del	yes	unknown	3533	1443	667	0	20
P-0021445-T01-IM6	SOMATIC	RB1		13	13	48878202	48881959	Intron of RB1(+):17bp after exon 1	Intron of RB1(+):417bp after exon 2		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.137+17_c.264+417del			3757	768	209	0	5
P-0012260-T01-IM5	SOMATIC	RB1	RB1	13	13	48936643	48938842	Intron of RB1(+): 308bp before exon 8	Intron of RB1(+): 188bp before exon 9		GRCh37	DELETION	8	6	Deletion of 1 exon: out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.719-308_c.862-188del	yes	unknown	2199	1521	936	0	5
P-0074778-T01-IM7	SOMATIC	RB1		13	13	48916966	49050313	Intron of RB1(+):116bp after exon 3	Intron of RB1(+):523bp before exon 25		GRCh37	DELETION			Deletion of 21 exons : out of frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.380+116_c.2521-524del			133347	15333	13465	0	15
P-0069133-T01-IM7	SOMATIC	RB1	RB1	13	13	48986758	49033986	Intron of RB1(+):31Kb after exon 17	Intron of RB1(+):17bp after exon 20		GRCh37	DELETION	10	5	Deletion of 3 exons : in frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.1695+31179_c.2106+17del	yes	unknown	47228	2547	2397	0	6
P-0076256-T01-IM7	SOMATIC	RB1	RB1	13	13	49000062	49050833	Intron of RB1(+):27Kb before exon 18	Intron of RB1(+):3bp before exon 25		GRCh37	DELETION	10	48	Deletion of 7 exons : in frame	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.1696-27067_c.2521-4del	yes	unknown	50771	5683	5674	0	50
P-0026290-T01-IM6	SOMATIC	RB1	RB1	13	13	48914657	48951064	Intron of RB1(+):2Kb before exon 3	Exon 13 of RB1(+)		GRCh37	DELETION	10	31	Deletion within transcript : mid-exon	PRECISE	3to5	B1 (NM_000321) Rearrangement : c.265-2078_c.1226del	yes	unknown	36407	5188	3158	0	31
P-0031293-T01-IM6	SOMATIC	RB1	RB1	13	13	48920174	48934185	Intron of RB1(+):839bp after exon 4	Exon 7 of RB1(+)		GRCh37	DELETION	10	31	Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.500+839_c.640del	yes	unknown	14011	2501	1950	0	33
P-0032170-T01-IM6	SOMATIC	RB1	RB1	13	13	48876391	48881417	Promoter of RB1(+):1Kb from tx start	Exon 2 of RB1(+)		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.139:RB1_chr13:g.48876391del	yes	unknown	5026	371	296	0	6
P-0040830-T01-IM6	SOMATIC	RB1	RB1	13	13	48881533	48882505	Exon 2 of RB1(+)	Intron of RB1(+):963bp after exon 2		GRCh37	DELETION	8	11	Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.255_c.264+963del	yes	unknown	972	166	121	8	4
P-0031357-T01-IM6	SOMATIC	RB1		13	13	49037920	49052441	Exon 21 of RB1(+)	Intron of RB1(+):901bp after exon 26		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.2160_c.2713+901del			14521	6049	3136	0	69
P-0034374-T01-IM6	SOMATIC	RB1		13	13	48936270	48939059	Intron of RB1(+):680bp before exon 8	Exon 9 of RB1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) Rearrangement: c.719-681_c.891del			2789	976	1411	0	10
P-0072769-T01-IM7	SOMATIC	RB1		13	13	48935759	48937031	Intron of RB1(+):1Kb before exon 8	Exon 8 of RB1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.719-1192_c.799del			1272	507	274	0	17
P-0013935-T01-IM5	SOMATIC	RB1	RB1	13	13	49033848	49049937	Exon 20 of RB1(+)	Intron of RB1(+): 900bp before exon 25		GRCh37	DELETION	13	9	Deletion within transcript: mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement:c.1985_c.2521-900del	yes	unknown	16089	8297	7160	0	9
P-0009715-T01-IM5	SOMATIC	RB1	RB1	13	13	48876093	48878176	Promoter of RB1(+): 2Kb from tx start	Exon 1 of RB1(+)		GRCh37	DELETION	50	11	Deletion within transcript: mid-exon	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.-1956_c.128del	yes	unknown	2083	781	192	0	11
P-0003925-T01-IM3	SOMATIC	RB1	RB1	13	13	48878071	48879154	Exon 1 of RB1(+)	Intron of RB1(+): 969bp after exon 1		GRCh37	DELETION	91	99	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	1083	232	89	0	118
P-0068481-T01-IM7	SOMATIC	RB1	RB1	13	13	48954404	48956448	Intron of RB1(+):27bp after exon 16	Intron of RB1(+):869bp after exon 17		GRCh37	DUPLICATION	10	41	Duplication of 1 exon : out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1498+27_c.1695+869dup	yes	unknown	2044	1836	3638	0	47
P-0040447-T01-IM6	SOMATIC	RB1	RB1	13	13	48998787	49030603	Intron of RB1(+):28Kb before exon 18	Intron of RB1(+):118bp after exon 19		GRCh37	DUPLICATION	8	10	Duplication of 2 exons : out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1696-28342_c.1960+118dup	yes	unknown	31816	1715	2120	0	10
P-0015713-T01-IM6	SOMATIC	RB1	RB1	13	13	48942648	48949434	Intron of RB1(+): 15bp before exon 11	Intron of RB1(+): 2Kb before exon 13		GRCh37	DUPLICATION	36	44	Duplication of 2 exons: out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1050-15_c.1216-1620dup	yes	unknown	6786	2100	2435	0	44
P-0040988-T01-IM6	SOMATIC	RB1		13	13	48954155	48957807	Intron of RB1(+):33bp before exon 15	Intron of RB1(+):2Kb after exon 17		GRCh37	DUPLICATION			Duplication of 3 exons : in frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1390-34_c.1695+2228dup			3652	2087	2638	0	4
P-0071205-T01-IM7	SOMATIC	RB1	RB1	13	13	48917885	48923249	Intron of RB1(+):1Kb after exon 3	Intron of RB1(+):90bp after exon 6		GRCh37	DUPLICATION	10	37	Duplication of 3 exons : out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.380+1035_c.607+90dup	yes	unknown	5364	1306	3667	0	38
P-0008538-T01-IM5	SOMATIC	RB1	RB1	13	13	48919160	48931033	Intron of RB1(+): 56bp before exon 4	Intron of RB1(+): 3Kb before exon 7		GRCh37	DUPLICATION	14	17	Duplication of 3 exons: out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement : c.381-56_608-3120dup	yes	unknown	11873	3048	3542	0	16
P-0075279-T01-IM7	SOMATIC	RB1	RB1	13	13	49014378	49038100	Intron of RB1(+):13Kb before exon 18	Intron of RB1(+):129bp after exon 21		GRCh37	DUPLICATION	9	6	Duplication of 4 exons : in frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1696-12751_c.2211+129dup	yes	unknown	23722	2822	3069	0	6
P-0047996-T02-IM6	SOMATIC	RB1	RB1	13	13	48920257	48939275	Intron of RB1(+):922bp after exon 4	Intron of RB1(+):168bp after exon 9		GRCh37	DUPLICATION	9	16	Duplication of 5 exons : out of frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.500+922_c.939+168dup	yes	unknown	19018	2966	4204	0	12
P-0059809-T01-IM7	SOMATIC	RB1	RB1	13	13	48986137	49047561	Intron of RB1(+):31Kb after exon 17	Intron of RB1(+):35bp after exon 24		GRCh37	DUPLICATION	10	33	Duplication of 7 exons : in frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.1695+30558_c.2520+35dup	yes	unknown	61424	7891	10016	0	34
P-0005176-T01-IM5	SOMATIC	RB1	RB1	13	13	48941622	48963511	Intron of RB1(+): 8bp before exon 10	Intron of RB1(+): 8Kb after exon 17		GRCh37	DUPLICATION	44	60	Duplication of 8 exons: in frame	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.940-8_c.1695+7932dup	yes	unknown	21889	6011	7560	0	56
P-0049993-T01-IM6	SOMATIC	RB1	RB1	13	13	48900538	48921971	Intron of RB1(+):16Kb before exon 3	Exon 5 of RB1(+)		GRCh37	DUPLICATION	10	20	Duplication within transcript : mid-exon	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.265-16197_c.511dup	yes	unknown	21433	1793	2922	0	26
P-0078241-T01-IM7	SOMATIC	RB1	RB1	13	13	48916800	48924196	Exon 3 of RB1(+)	Intron of RB1(+):1Kb after exon 6		GRCh37	DUPLICATION	10	35	Duplication within transcript : mid-exon	PRECISE	5to3	RB1 (NM_000321) rearrangement: c.330_c.607+1037dup	yes	unknown	7396	2171	2407	0	37
P-0019320-T01-IM6	SOMATIC	RB1	RB1	13	13	48877998	48920951	5-UTR of RB1(+):50bp before coding start	Intron of RB1(+):1Kb before exon 5		GRCh37	INVERSION	10	36	RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) rearrangement: c.-51_c.501-1010inv	yes	unknown	42953	4177	3752	0	61
P-0065975-T01-IM7	SOMATIC	RB1	LINC01031	13	1	48937930	193565088	Intron of RB1(+):837bp after exon 8	IGR: 291Kb before LINC01031(+)		GRCh37	TRANSLOCATION	10	20	RB1-intragenic	PRECISE	3to5	RB1 (NM_000321) rearrangement: t(1;13)(q31.2;q14.2)(chr1:g.193565088::chr13:g.48937930)	yes	unknown	0	0	0	0	21
P-0070400-T01-IM7	SOMATIC	RB1	MYC	13	8	49054056	128766857	Intron of RB1(+):77bp before exon 27	IGR: 19Kb before MYC(+)		GRCh37	TRANSLOCATION	10	18	RB1-intragenic	PRECISE	5to3	RB1 (NM_000321) rearrangement: t(8;13)(q24.21;q14.2)(chr8:g.128766857::chr13:g.49054056)	yes	unknown	0	0	0	0	18
P-0072496-T01-IM7	SOMATIC	RB1	RB1	13	13	48741830	48881285	IGR: 65Kb before ITM2B(+)	Intron of RB1(+):130bp before exon 2		GRCh37	DELETION	10	29	RB1-intragenic	PRECISE	3to5	RB1 (NM_000321) rearrangement: c.138-131:RB1_chr13:g.48741830del	yes	unknown	139455	2723	2337	0	29
P-0065971-T01-IM7	SOMATIC	RB1	RB1	13	13	48954114	48960263	Intron of RB1(+):74bp before exon 15	Intron of RB1(+):5Kb after exon 17		GRCh37	INVERSION	10	43	RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) rearrangement: c.1390-75_c.1695+4684inv	yes	unknown	6149	2138	4271	0	45
P-0080627-T01-IM7	SOMATIC	RB1		13	13	19362401	48954227	IGR: 46Kb before ANKRD20A9P(-)	Intron of RB1(+):7bp after exon 15		GRCh37	INVERSION			RB1-intragenic	PRECISE	3to3	RB1 (NM_000321) rearrangement: c.1421+7:RB1_chr13:g.19362401inv			29591826	325983	226460	0	38
P-0004759-T01-IM5	SOMATIC	RB1		X	13	11732599	49047485	IGR: 44Kb before MSL3(+)	Intron of RB1(+): 11bp before exon 24		GRCh37	TRANSLOCATION			RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) rearrangement : t(13;X)(13q14.2;Xp22.2)(chr13:g.49047485::chrX:g.11732599)			0	0	0	0	34
P-0014271-T01-IM6	SOMATIC	RB1		13	7	48881486	73260966	Exon 2 of RB1(+)	IGR: 4Kb after WBSCR27(-)		GRCh37	TRANSLOCATION			RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) rearrangement: t(7;13)(q11.23;q14.2)(chr7:g.73260966::chr13:g.48881486)			0	0	0	0	31
P-0023031-T01-IM6	SOMATIC	RB1		13	1	48916708	59514813	Intron of RB1(+):26bp before exon 3	5-UTR of LINC01358(+):39Kb before coding start		GRCh37	TRANSLOCATION			RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) Rearrangement : t(1;13)(p32.2;p21.2)(chr1:g.59514813::chr13:g.48916708)			0	0	0	0	61
P-0046243-T01-IM6	SOMATIC	RB1		13	13	48878049	52414371	Exon 1 of RB1(+)	3-UTR of LINC00282(-):5Kb after coding stop		GRCh37	INVERSION			RB1-intragenic	PRECISE	5to5	RB1 (NM_000321) rearrangement: c.1:RB1_chr13:g.52414371inv			3536322	33931	29632	0	41
P-0000187-T01-IM3	SOMATIC	RB1	TGFB2	13	1	48916784	218540078	Exon 3 of RB1(+)	Intron of TGFB2(+): 3Kb after exon 2		GRCh37	TRANSLOCATION	62	52	TGFB2-RB1 fusion	PRECISE	5to5		yes	unknown	0	0	0	0	47
P-0047732-T01-IM6	SOMATIC	RBM10		X	X	47038857	47042089	Exon 9 of RBM10(+)	Intron of RBM10(+):364bp after exon 17		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	RBM10 (NM_001204468) rearrangement: c.1059_c.2145+364inv			3232	16637	27298	0	15
P-0022337-T01-IM6	SOMATIC	RBM10		X	X	47043163	47044822	Intron of RBM10(+):1Kb before exon 18	Intron of RBM10(+):18bp before exon 20		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	RBM10 (NM_001204468) Rearrangement: c.2146-1291_c.2362-19del			1659	3993	2840	0	16
P-0072798-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47037487	47039545	Intron of RBM10(+):1Kb before exon 8	Intron of RBM10(+):65bp before exon 11		GRCh37	DELETION	10	11	Deletion of 3 exons : in frame	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.859-1015_c.1258-66del	yes	unknown	2058	3222	3301	0	11
P-0075087-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47043133	47045630	Intron of RBM10(+):1Kb before exon 18	Intron of RBM10(+):26bp before exon 23		GRCh37	DELETION	10	10	Deletion of 5 exons : out of frame	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.2146-1321_c.2733-27del	yes	unknown	2497	5505	6541	0	10
P-0031891-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47006856	47019554	Exon 2 of RBM10(+)	Intron of RBM10(+):9Kb before exon 3		GRCh37	DELETION	8	4	Deletion within transcript : mid-exon	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.171_c.213-9160del	yes	unknown	12698	729	947	0	4
P-0035182-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47018829	47041257	Intron of RBM10(+):10Kb before exon 3	Exon 15 of RBM10(+)		GRCh37	DELETION	10	9	Deletion within transcript : mid-exon	PRECISE	3to5	RBM10 (NM_001204468) Rearrangement : c.213-9885_c.1880del	yes	unknown	22428	30076	20479	0	9
P-0061148-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47020709	47038744	Intron of RBM10(+):8Kb before exon 3	Exon 9 of RBM10(+)		GRCh37	DELETION	10	28	Deletion within transcript : mid-exon	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.213-8005_c.946del	yes	unknown	18035	4983	4109	0	27
P-0032044-T01-IM6	SOMATIC	RBM10		X	X	47034488	47035896	Exon 6 of RBM10(+)	Intron of RBM10(+):2bp before exon 7		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.768_c.772-3del			1408	1178	910	0	3
P-0042090-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47037542	47041844	Intron of RBM10(+):959bp before exon 8	Intron of RBM10(+):119bp after exon 17		GRCh37	DUPLICATION	10	12	Duplication of 10 exons : in frame	PRECISE	5to3	RBM10 (NM_001204468) rearrangement: c.859-960_c.2145+119dup	yes	unknown	4302	26088	23129	0	11
P-0028838-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47038611	47039626	Intron of RBM10(+):49bp after exon 8	Exon 11 of RBM10(+)		GRCh37	INVERSION	0	6	RBM10-intragenic	IMPPRECISE	5to5	RBM10 (NM_001204468) rearrangement: c.919+49_c.1273inv	yes	unknown	1015	2493	4305	0	7
P-0028913-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47008314	47028890	Intron of RBM10(+):1Kb after exon 2	Exon 3 of RBM10(+)		GRCh37	INVERSION	10	30	RBM10-intragenic	PRECISE	5to5	RBM10 (NM_001204468) rearrangement: c.212+1417_c.389inv	yes	unknown	20576	940	8556	0	50
P-0062301-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47038594	47039769	Intron of RBM10(+):32bp after exon 8	Intron of RBM10(+):48bp before exon 12		GRCh37	INVERSION	0	8	RBM10-intragenic	IMPPRECISE	5to5	RBM10 (NM_001204468) rearrangement: c.919+32_c.1356-49inv	yes	unknown	1175	4557	5004	0	8
P-0069002-T02-IM7	SOMATIC	RBM10	RBM10	X	X	46931765	47040745	IGR: 6Kb before RGN(+)	Exon 13 of RBM10(+)		GRCh37	DELETION	10	15	RBM10-intragenic	PRECISE	3to5	RBM10 (NM_001204468) rearrangement: c.1575:RBM10_chrX:g.46931765del	yes	unknown	108980	13543	15551	0	18
P-0036563-T01-IM6	SOMATIC	RBM10		X	X	20502473	47041070	IGR: 334Kb before RPS6KA3(-)	Intron of RBM10(+):25bp after exon 14		GRCh37	INVERSION			RBM10-intragenic	PRECISE	3to3	RBM10 (NM_001204468) Rearrangement : c.1770+25:RBM10_chrX:g.20502473inv			26538597	116787	64641	0	34
P-0010159-T01-IM5	SOMATIC	RBM10	PHIP	X	6	47004857	79678650	5-UTR of RBM10(+): 2Kb before coding start	Intron of PHIP(-): 902bp after exon 27		GRCh37	TRANSLOCATION	5	9	Transcript fusion (RBM10-PHIP)	PRECISE	3to3	RBM10 (NM_001204468) - PHIP (NM_017934) rearrangement: t(6;X)(q14.1;p11.23)(chr6:g.79678650::chrX:g.47004857)	yes	unknown	0	0	0	0	9
P-0013859-T01-IM5	SOMATIC	RBPMS	NTRK3								GRCh37				RBPMS-NTRK3 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: RBPMS-NTRK3 fusion. Note: The rearrangement is an in-frame fusion between genes RBPM3 Exon5 (NM_001008710) and NTRK3 Exon14 (NM_002530).	yes	unknown					
P-0085029-T01-IM7	SOMATIC	RCAN1	RUNX1	21	21	35973166	36182121	Intron of RCAN1(-):14Kb after exon 1	Intron of RUNX1(-):10Kb before exon 8		GRCh37	DUPLICATION			Protein Fusion: out of frame  {RCAN1:RUNX1}	PRECISE	5to3	RCAN1 (NM_004414) - RUNX1 (NM_001754) rearrangement: c.252+13893:RCAN1_c.806-10362:RUNX1dup			208955	5666	14446	0	3
P-0046175-T02-IM6	SOMATIC	RCN1	TMPRSS2	21	11	42875275	32114150	Intron of TMPRSS2(-):5Kb after exon 1	Intron of RCN1(+):1Kb after exon 1		GRCh37	TRANSLOCATION	10	19	Protein Fusion: out of frame  {RCN1:TMPRSS2}	PRECISE	3to3	RCN1 (NM_002901) - TMPRSS2 (NM_001135099) rearrangement: t(11;21)(p13;q22.3)(chr11:g.32114150::chr21:g.42875275)	yes	unknown	0	0	0	0	19
P-0060076-T02-IM7	SOMATIC	RECQL	RECQL	12	12	21625944	21628781	Intron of RECQL(-):540bp after exon 12	Intron of RECQL(-):23bp before exon 9		GRCh37	DUPLICATION	10	5	Duplication of 4 exons : in frame	PRECISE	5to3	RECQL (NM_032941) rearrangement: c.950-23_c.1447+541dup	yes	unknown	2837	4783	3177	0	5
P-0019340-T01-IM6	SOMATIC	RECQL		16	12	1564105	21644586	Intron of IFT140(-):3Kb before exon 31	Exon 4 of RECQL(-)		GRCh37	TRANSLOCATION			RECQL-intragenic	PRECISE	3to3	RECQL (NM_032941)  rearrangement: t(12;16)(p12.1;p13.3)(chr12:g.21644586::chr16:g.1564105)			0	0	0	0	38
P-0020395-T01-IM6	SOMATIC	RECQL		12	12	21628443	24778811	Exon 11 of RECQL(-)	IGR: 59Kb before LINC00477(-)		GRCh37	DELETION			RECQL-intragenic	PRECISE	3to5	RECQL (NM_032941) rearrangement: c.1175:RECQL_chr12:g.24778811del			3150368	21406	17687	0	9
P-0015184-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	145741838	145742407	Exon 5 of RECQL4(-)	Intron of RECQL4(-): 27bp after exon 4		GRCh37	DUPLICATION	70	27	Duplication within transcript: mid-exon	PRECISE	5to3	RECQL4 (NM_004260) rearrangement: c.665_c.354+27dup	yes	unknown	569	3102	3880	0	27
P-0027448-T01-IM6	SOMATIC	RECQL4	ARHGAP39	8	8	145737590	145780761	Exon 19 of RECQL4(-)	Intron of ARHGAP39(-):182bp after exon 5		GRCh37	DELETION	10	6	Protein Fusion: mid-exon  {ARHGAP39:RECQL4}	PRECISE	3to5	ARHGAP39 (NM_025251) - RECQL4 (NM_004260) rearrangement: c.596+183:ARHGAP39_c.3173:RECQL4del	yes	unknown	43171	36606	65039	0	6
P-0067823-T01-IM7	SOMATIC	RECQL4		8	8	39203243	145737929	5-UTR of ADAM5(+):57Kb before coding start	Exon 18 of RECQL4(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {RECQL4:ADAM5}	PRECISE	5to5	RECQL4 (NM_004260) rearrangement: c.2901:RECQL4_chr8:g.39203243inv			106534686	449484	693094	0	14
P-0037180-T01-IM6	SOMATIC	RECQL4	CPSF1	8	8	145626911	145738498	Exon 4 of CPSF1(-)	Exon 16 of RECQL4(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {RECQL4:CPSF1}	PRECISE	3to5	RECQL4 (NM_004260) - CPSF1 (NM_013291) rearrangement: c.2487:RECQL4_c.219:CPSF1del			111587	13040	13219	0	46
P-0043090-T01-IM6	SOMATIC	RECQL4	CSMD3	8	8	114138459	145739383	Intron of CSMD3(-):27Kb before exon 5	Exon 12 of RECQL4(-)		GRCh37	DELETION	10	4	Protein Fusion: mid-exon  {RECQL4:CSMD3}	PRECISE	3to5	RECQL4 (NM_004260) - CSMD3 (NM_198123) rearrangement: c.1987:RECQL4_c.710-27267:CSMD3del	yes	unknown	31600924	113437	61489	0	4
P-0073963-T02-IM7	SOMATIC	RECQL4	ZFTRAF1	8	8	145677486	145737345	Intron of CYHR1(-):255bp after exon 4	Exon 20 of RECQL4(-)		GRCh37	DELETION	10	18	Protein Fusion: mid-exon  {RECQL4:ZFTRAF1}	PRECISE	3to5	RECQL4 (NM_004260) - CYHR1 (NM_138496) rearrangement: c.3343:RECQL4_c.697+256:CYHR1del	yes	unknown	59859	2985	2292	0	18
P-0023678-T01-IM6	SOMATIC	RECQL4	LRRC24	8	8	145738412	145749467	Exon 16 of RECQL4(-)	Intron of LRRC24(-):26bp after exon 4		GRCh37	DUPLICATION	10	20	Protein Fusion: mid-exon  {RECQL4:LRRC24}	PRECISE	5to3	RECQL4 (NM_004260) - LRRC24 (NM_001024678) Rearrangement : c.2574:RECQL4_c.607+2:LRRC24dup	yes	unknown	11055	33657	56702	0	20
P-0054813-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	109019097	145742762	Intron of RSPO2(-):18Kb before exon 3	Intron of RECQL4(-):35bp after exon 3		GRCh37	DELETION	10	52	Protein Fusion: out of frame  {RECQL4:RSPO2}	PRECISE	3to5	RECQL4 (NM_004260) rearrangement: c.213+36:RECQL4_chr8:g.109019097del	yes	unknown	36723665	131452	272625	0	53
P-0036181-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	145736529	145738856	Promoter of RECQL4(-):137bp from tx start	Exon 14 of RECQL4(-)		GRCh37	INVERSION	10	209	RECQL4-intragenic	PRECISE	3to3	RECQL4 (NM_004260) rearrangement: c.2209:RECQL4_chr8:g.145736529del	yes	unknown	2327	15160	21658	0	209
P-0034357-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	121672884	145742184	Intron of SNTB1(-):28Kb before exon 3	Intron of RECQL4(-):36bp before exon 5		GRCh37	INVERSION	10	21	RECQL4-intragenic	PRECISE	3to3	RECQL4 (NM_004260) rearrangement: c.355-36:RECQL4_chr8:g.121672884inv	yes	unknown	24069300	93897	153786	0	19
P-0034783-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	130007438	145738799	IGR: 221Kb before LINC00977(-)	Exon 14 of RECQL4(-)		GRCh37	INVERSION	10	51	RECQL4-intragenic	PRECISE	5to5	RECQL4 (NM_004260) rearrangement: c.2266:RECQL4_chr8:g.130007438inv	yes	unknown	15731361	59227	92772	0	73
P-0059311-T01-IM7	SOMATIC	RECQL4	RECQL4	8	8	145742441	145744114	Exon 4 of RECQL4(-)	Promoter of RECQL4(-):7Kb from tx start		GRCh37	INVERSION	10	9	RECQL4-intragenic	PRECISE	3to3	RECQL4 (NM_004260) rearrangement: c.347:RECQL4_chr8:g.145744114inv	yes	unknown	1673	4567	2893	0	9
P-0041456-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	124678791	145740262	IGR: 14Kb before ANXA13(-)	Intron of RECQL4(-):57bp after exon 9		GRCh37	INVERSION	8	5	RECQL4-intragenic	PRECISE	5to5	RECQL4 (NM_004260) rearrangement: c.1620+58:RECQL4_chr8:g.124678791inv	yes	unknown	21061471	71195	105765	0	5
P-0037642-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	143647141	145741720	IGR: 45Kb before ARC(-)	Exon 5 of RECQL4(-)		GRCh37	DELETION	10	11	RECQL4-intragenic	PRECISE	3to5	RECQL4 (NM_004260) rearrangement: c.783:RECQL4_chr8:g.143647141del	yes	unknown	2094579	44898	49604	0	11
P-0066292-T03-IM7	SOMATIC	RECQL4	RECQL4	8	8	140505569	145737508	IGR: 108Kb before KCNK9(-)	Intron of RECQL4(-):18bp after exon 19		GRCh37	INVERSION	10	49	RECQL4-intragenic	PRECISE	5to5	RECQL4 (NM_004260.3) rearrangement: c.3237+19:RECQL4_chr8:g.140505569inv	yes	unknown	5231939	65687	125702	0	54
P-0080555-T01-IM7	SOMATIC	RECQL4	RECQL4	8	8	138171353	145740301	IGR: 247Kb before LOC101927915(-)	Intron of RECQL4(-):18bp after exon 9		GRCh37	INVERSION			RECQL4-intragenic	PRECISE	5to5	RECQL4 (NM_004260) rearrangement: c.1620+19:RECQL4_chr8:g.138171353inv			7568948	64567	123629	0	93
P-0006151-T01-IM5	SOMATIC	RECQL4	ZMAT4	8	8	40459727	145742146	Intron of ZMAT4(-): 21Kb before exon 5	Exon 5 of RECQL4(-)		GRCh37	INVERSION			RECQL4-ZMAT4 Fusion	PRECISE	3to3	RECQL4 (NM_004260) - ZMAT4 (NM_024645) rearrangement : c.357:RECQL4_c.578-20947:ZMAT4inv			105282419	215174	249175	0	21
P-0001724-T01-IM3	SOMATIC	RECQL4	MYT1	20	8	62827327	145737762	5-UTR of MYT1(+): 3Kb before coding start	Intron of RECQL4(-): 13bp after exon 17		GRCh37	TRANSLOCATION	29	11	Transcript fusion (RECQL4-MYT1)	PRECISE	5to5	RECQL4 (NM_004260) - MYT1 (NM_004535) Translocation :   t(8;20)(q24.3;q13.33)(chr20:c.3055+13::chr8:c.1-2888)	yes	unknown	0	0	0	0	11
P-0069345-T01-IM7	SOMATIC	REL	REL	2	2	61144274	61149012	Intron of REL(+):122bp after exon 5	Exon 11 of REL(+)		GRCh37	DELETION	10	22	Deletion within transcript : mid-exon	PRECISE	3to5	REL (NM_002908) rearrangement: c.535+122_c.1202del	yes	unknown	4738	4721	5446	1	21
P-0055927-T02-IM6	SOMATIC	REL	FAM161A	2	2	61144087	61913680	Exon 5 of REL(+)	IGR: 138Kb before FAM161A(-)		GRCh37	DELETION	10	23	REL-intragenic	PRECISE	3to5	REL (NM_002908) rearrangement: c.470:REL_chr2:g.61913680del	yes	unknown	769593	33035	42739	0	23
P-0016180-T01-IM6	SOMATIC	REL		2	2	34704420	61128243	IGR: 198Kb before LINC01320(+)	Intron of REL(+):25bp after exon 4		GRCh37	INVERSION			REL-intragenic	PRECISE	3to3	REL (NM_002908) rearrangement : g.34704420_c.394+25:RELinv			26423823	156855	312842	10	23
P-0028994-T01-IM6	SOMATIC	REL		2	2	34704411	61128283	IGR: 198Kb before LINC01320(+)	Intron of REL(+):65bp after exon 4		GRCh37	INVERSION			REL-intragenic	IMPPRECISE	3to3	REL (NM_002908) rearrangement: c.394+65:REL_chr2:g.34704411inv			26423872	88330	252836	0	14
P-0049029-T01-IM6	SOMATIC	RELA	GNAI1	11	7	65429657	79622169	Exon 2 of RELA(-)	IGR: 142Kb before GNAI1(+)		GRCh37	TRANSLOCATION	10	7	RELA-intragenic	PRECISE	3to3	RELA (NM_021975) rearrangement: t(7;11)(q21.11;q13.1)(chr7:g.79622169::chr11:g.65429657)	yes	unknown	0	0	0	0	7
P-0022383-T01-IM6	SOMATIC	RERE	MTOR	1	1	8609439	11173046	Intron of RERE(-):7Kb after exon 6	Intron of MTOR(-):72bp before exon 54		GRCh37	DUPLICATION	10	21	Protein Fusion: out of frame  {RERE:MTOR}	PRECISE	5to3	RERE (NM_001042681) - MTOR (NM_004958) rearrangement: c.725+7095:RERE_c.7301-72:MTORdup	yes	unknown	2563607	59041	52645	0	21
P-0035226-T01-IM6	SOMATIC	RERE	SMAD2	18	1	45368323	8565611	Intron of SMAD2(-):2bp before exon 11	Intron of RERE(-):3Kb after exon 8		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {RERE:SMAD2}	IMPPRECISE	3to5	RERE (NM_001042681) - SMAD2 (NM_001003652) rearrangement: t(1;18)(p36.23;q21.1)(chr1:g.8565611::chr18:g.45368323)			0	0	0	0	8
P-0048587-T01-IM6	SOMATIC	RET	RET	10	10	43608878	43610422	Intron of RET(+):125bp before exon 10	Intron of RET(+):238bp after exon 11		GRCh37	INVERSION	7	2	Antisense Fusion	PRECISE	3to3	RET (NM_020975) rearrangement: c.1760-126_c.2136+238inv	yes	unknown	1544	15117	15814	0	2
P-0020078-T01-IM6	SOMATIC	RET		10	10	43608871	43610429	Intron of RET(+):132bp before exon 10	Intron of RET(+):245bp after exon 11		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	RET (NM_020975) rearrangement: c.1760-133_c.2136+245inv			1558	12273	17229	0	4
P-0048875-T03-IM6	SOMATIC	RET		10	10	43610184	56155858	Exon 11 of RET(+)	Intron of PCDH15(-):17Kb before exon 5		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	RET (NM_020975) rearrangement: c.2136:RET_chr10:g.56155858del			12545674	53575	64318	0	206
P-0058090-T02-IM7	SOMATIC	RET		10	10	43572446	43598098	Promoter of RET(+):70bp from tx start	Intron of RET(+):21bp after exon 3		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	RET (NM_020975) rearrangement: c.625+21:RET_chr10:g.43572446inv			25652	6586	8627	0	16
P-0065954-T02-IM7	SOMATIC	RET		10	10	43611441	43627376	Intron of RET(+):590bp before exon 12	Promoter of RET(+):55Kb from tx start		GRCh37	DUPLICATION			Duplication within transcript	PRECISE	5to3	RET (NM_020975) rearrangement: c.2137-591:RET_chr10:g.43627376dup			15935	22042	16510	0	5
P-0075285-T01-IM7	SOMATIC	RET	RET	10	10	43606844	43626503	Exon 7 of RET(+)	Promoter of RET(+):54Kb from tx start		GRCh37	DUPLICATION	10	33	Duplication within transcript : mid-exon	PRECISE	5to3	RET (NM_020975) rearrangement: c.1453:RET_chr10:g.43626503dup	yes	unknown	19659	38458	56568	0	33
P-0078424-T02-IM7	SOMATIC	RET	RET	10	10	43610146	43612862	Exon 11 of RET(+)	Intron of RET(+):683bp after exon 12		GRCh37	DUPLICATION	10	142	Duplication within transcript : mid-exon	PRECISE	5to3	RET (NM_020975) rearrangement: c.2098_c.2284+683dup	yes	unknown	2716	11932	16304	0	142
P-0071559-T01-IM7	SOMATIC	RET		10	10	43611222	115885398	Intron of RET(+):809bp before exon 12	Intron of CCDC186(-):246bp after exon 15		GRCh37	INVERSION			Protein Fusion: in frame  {CCDC186:RET}	PRECISE	5to5	RET (NM_020975) rearrangement: c.2137-810:RET_chr10:g.115885398inv			72274176	402331	257732	0	24
P-0022380-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610659	61644070	Intron of RET(+):475bp after exon 11	Intron of CCDC6(-):22Kb after exon 1		GRCh37	INVERSION	10	14	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20 ): c.303+21810:CCDC6_c.2136+475:RETinv	yes	unknown	18033411	51370	31341	0	21
P-0017365-T02-IM6	SOMATIC	RET	CCDC6	10	10	43611464	61640379	Intron of RET(+):567bp before exon 12	Intron of CCDC6(-):26Kb after exon 1		GRCh37	INVERSION	10	51	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+25501:CCDC6_c.2137-568:RETinv	yes	unknown	18028915	55147	50005	0	85
P-0027953-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611278	61644979	Intron of RET(+):753bp before exon 12	Intron of CCDC6(-):21Kb after exon 1		GRCh37	INVERSION	10	57	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+20901:CCDC6_c.2137-754:RETinv	yes	unknown	18033701	28642	43394	0	70
P-0029315-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610631	61632922	Intron of RET(+):447bp after exon 11	Intron of CCDC6(-):20Kb before exon 2		GRCh37	INVERSION	10	54	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20: c.304-20462:CCDC6_c.2136+447:RETinv	yes	unknown	18022291	40402	51208	0	61
P-0030990-T03-IM6	SOMATIC	RET	CCDC6	10	10	43611881	61654940	Intron of RET(+):150bp before exon 12	Intron of CCDC6(-):11Kb after exon 1		GRCh37	INVERSION	10	85	Protein Fusion: in frame  {CCDC6:RET}	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exon 12-20): c.303+10940:CCDC6_c.2137-151:RETinv	yes	unknown	18043059	27370	45788	0	125
P-0073813-T01-IM7	SOMATIC	RET	CCDC6	10	10	43610365	61553297	Intron of RET(+):181bp after exon 11	Intron of CCDC6(-):428bp before exon 9		GRCh37	INVERSION	10	32	Protein Fusion: in frame  {RET:CCDC6}	PRECISE	3to3	RET (NM_020975) - CCDC6 (NM_005436) rearrangement: c.2136+181:RET_c.1231-428:CCDC6inv	yes	unknown	17942932	63064	59968	0	32
P-0045809-T02-IM6	SOMATIC	RET	FBXL7	10	5	43622269	15556734	Intron of RET(+):99bp after exon 19	Intron of FBXL7(+):56Kb after exon 1		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {RET:FBXL7}	IMPPRECISE	3to5	RET (NM_020975) - FBXL7 (NM_012304) fusion: t(5;10)(p15.1;q11.21)(chr5:g.15556734::chr10:g.43622269)			0	0	0	0	5
P-0043704-T01-IM6	SOMATIC	RET	KIF5B	10	10	32306364	43610331	Intron of KIF5B(-):77bp before exon 24	Intron of RET(+):147bp after exon 11		GRCh37	INVERSION	10	26	Protein Fusion: in frame  {RET:KIF5B}	PRECISE	3to3	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.2136+147:RET_c.2545-77:KIF5Binv	yes	unknown	11303967	47062	66946	0	26
P-0015588-T01-IM6	SOMATIC	RET	C10orf118	10	10	43610308	115896803	Intron of RET(+): 124bp after exon 11	Intron of C10orf118(-): 142bp after exon 7		GRCh37	INVERSION	60	27	Protein fusion: in frame (C10orf118-RET)	PRECISE	5to5	C10orf118 (NM_018017) - RET (NM_020975) Rearrangement : c.1326+142:C10orf118_c.2136+124:RETinv	yes	unknown	72286495	306304	289067	0	25
P-0005863-T01-IM5	SOMATIC	RET	CCDC6	10	10	43610651	61636814	Intron of RET(+): 467bp after exon 11	Intron of CCDC6(-): 24Kb before exon 2		GRCh37	INVERSION	61	42	Protein fusion: in frame (CCDC6-RET)	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon1 with RET exons 12-20): c.304-24354:CCDC6_ c.2136+467:RETinv.	yes	unknown	18026163	69737	79464	0	41
P-0001898-T01-IM3	SOMATIC	RET	CCDC6	10	10	43611699	61624799	Intron of RET(+): 333bp before exon 12	Intron of CCDC6(-): 12Kb before exon 2		GRCh37	INVERSION	43	18	Protein fusion: in frame (CCDC6-RET)	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) inversion: c.304-12339_c.2137-333inv5	yes	unknown	18013100	38834	41004	0	18
P-0008955-T03-IM5	SOMATIC	RET	CCDC6	10	10	43611019	61639852	Intron of RET(+): 835bp after exon 11	Intron of CCDC6(-): 26Kb after exon 1		GRCh37	INVERSION	29	22	Protein fusion: in frame (CCDC6-RET)	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+26028:CCDC6_c.2136+835:RETinv	yes	unknown	18028833	34083	36681	0	22
P-0013023-T01-IM5	SOMATIC	RET	CCDC6	10	10	43611810	61630364	Intron of RET(+): 222bp before exon 12	Intron of CCDC6(-): 18Kb before exon 2		GRCh37	INVERSION	44	8	Protein fusion: in frame (CCDC6-RET)	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-17904:CCDC6_c.2137-222:RETinv	yes	unknown	18018554	38571	38042	0	8
P-0015435-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610969	61633826	Intron of RET(+): 785bp after exon 11	Intron of CCDC6(-): 21Kb before exon 2		GRCh37	INVERSION	60	53	Protein fusion: in frame (CCDC6-RET)	PRECISE	5to5	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exon 12): c.304-21366:CCDC6_c.2136+785:RETinv	yes	unknown	18022857	56015	53610	0	52
P-0001151-T01-IM3	SOMATIC	RET	NCOA4	10	10	43611645	51589150	Intron of RET(+): 387bp before exon 12	Intron of NCOA4(+): 75bp before exon 11		GRCh37	DUPLICATION	27	14	Protein fusion: in frame (NCOA4-RET)	PRECISE	5to3	RET (NM_020630) - NCOA4 (NM_005437) Duplication : c.2137-387_c.1840-75dup	yes	unknown	7977505	33721	35267	0	16
P-0001898-T01-IM3	SOMATIC	RET	RASSF4	10	10	43611749	45467653	Intron of RET(+): 283bp before exon 12	Intron of RASSF4(+): 357bp after exon 3		GRCh37	DELETION	21	15	Protein fusion: in frame (RET-RASSF4)	PRECISE	3to5	RET (NM_020975) - RASSF4 (NM_032023) deletion: c.2137-283_c.138+357del	yes	unknown	1855904	14419	13672	0	17
P-0030396-T02-IM6	SOMATIC	RET	DOCK1	10	10	43608320	128908913	Exon 9 of RET(+)	Intron of DOCK1(+):295bp after exon 25		GRCh37	DUPLICATION	10	110	Protein Fusion: mid-exon  {DOCK1:RET}	PRECISE	5to3	DOCK1 (NM_001380) - RET (NM_020975) Rearrangement: c.2515+295:RET_c.1668:RETdup	yes	unknown	85300593	270910	409916	0	114
P-0022818-T01-IM6	SOMATIC	RET	NCOA4	10	10	43611746	51585221	Intron of RET(+):285bp before exon 12	Exon 8 of NCOA4(+)		GRCh37	DUPLICATION	10	81	Protein Fusion: mid-exon  {NCOA4:RET}	PRECISE	5to3	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-8 fused with RET exons 12-20): c.618+42:NCOA4_c.2137-860:RETdup	yes	unknown	7973475	27535	27426	0	121
P-0030396-T02-IM6	SOMATIC	RET	RBPMS	10	8	43610018	30412656	Exon 11 of RET(+)	Intron of RBPMS(+):4Kb before exon 7		GRCh37	TRANSLOCATION	10	74	Protein Fusion: mid-exon  {RBPMS:RET}	PRECISE	5to3	RBPMS (NM_001008712) - RET (NM_020975) Rearrangement : t(8,10)(p21.1,q11.21)(chr8:g.30412656::chr10:g.43610018)	yes	unknown	0	0	0	0	73
P-0013886-T01-IM5	SOMATIC	RET	EML4	10	2	43610067	42550559	Exon 11 of RET(+)	Intron of EML4(+): 2Kb before exon 19		GRCh37	TRANSLOCATION	0	21	Protein fusion: mid-exon (EML4-RET)	IMPRECISE	5to3	EML4 (NM_019063) - RET (NM_020975) rearrangement: t(2;10)(p21;q11.21)(chr2:g.42550559::chr10:g.43610067)	yes	unknown	0	0	0	0	20
P-0071557-T01-IM7	SOMATIC	RET	ANKRD2	10	10	43608261	99342573	Intron of RET(+):39bp before exon 9	Intron of ANKRD2(+):114bp after exon 8		GRCh37	DELETION	10	2	Protein Fusion: out of frame  {RET:ANKRD2}	PRECISE	3to5	RET (NM_020975) - ANKRD2 (NM_020349) rearrangement: c.1649-40:RET_c.933+114:ANKRD2del	yes	unknown	55734312	342513	178790	0	2
P-0018069-T01-IM6	SOMATIC	RET	KIF5B	10	10	32311257	43607832	Intron of KIF5B(-):72bp before exon 17	Intron of RET(+):160bp after exon 8		GRCh37	INVERSION			Protein Fusion: out of frame  {RET:KIF5B}	PRECISE	3to3	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.1648+160:RET_c.1915-72:KIF5Binv			11296575	49281	46721	0	40
P-0019663-T01-IM6	SOMATIC	RET	LIN52	14	10	74562750	43608613	Intron of LIN52(+):62bp after exon 3	Intron of RET(+):202bp after exon 9		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {RET:LIN52}	PRECISE	5to3	RET (NM_020975) - LIN52 (NM_001024674) Rearrangement : t(10;14)(p32.1;q12)(chr10:g.43608613:chr14:g.74562750)			0	0	0	0	14
P-0053530-T01-IM6	SOMATIC	RET	SLC4A4	10	4	43610439	72412310	Intron of RET(+):255bp after exon 11	Intron of SLC4A4(+):65bp after exon 19		GRCh37	TRANSLOCATION	10	37	Protein Fusion: out of frame  {RET:SLC4A4}	PRECISE	3to5	RET (NM_020975) - SLC4A4 (NM_001134742) rearrangement: t(4;10)(q13.3;q11.21)(chr4:g.72412310::chr10:g.43610439)	yes	unknown	0	0	0	0	38
P-0042880-T01-IM6	SOMATIC	RET		10	10	43611020	51588973	Intron of RET(+):836bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7		GRCh37	DELETION			Protein Fusion: out of frame  {RET:TIMM23B}	PRECISE	3to5	RET (NM_020975) rearrangement: c.2136+836:RET_chr10:g.51588973del			7977953	25606	32533	0	60
P-0021980-T01-IM6	SOMATIC	RET	TIMM23B	10	10	43610550	51584025	Intron of RET(+):366bp after exon 11	Intron of TIMM23B(+):149Kb before exon 7		GRCh37	DUPLICATION	10	13	Protein Fusion: out of frame  {TIMM23B:RET}	PRECISE	5to3	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-8 fused to RET exons 12- 20): c.763-591:NCOA4_c.2136+366:RETdup	yes	unknown	7973475	33042	25330	0	38
P-0045460-T01-IM6	SOMATIC	RET		10	10	43610285	51588385	Intron of RET(+):101bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7		GRCh37	DUPLICATION			Protein Fusion: out of frame  {TIMM23B:RET}	PRECISE	5to3	RET (NM_020975) rearrangement: c.2136+101:RET_chr10:g.51588385dup			7978100	37973	43537	0	115
P-0045466-T01-IM6	SOMATIC	RET		10	10	43610244	51588788	Intron of RET(+):60bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7		GRCh37	DUPLICATION			Protein Fusion: out of frame  {TIMM23B:RET}	PRECISE	5to3	RET (NM_020975) rearrangement: c.2136+60:RET_chr10:g.51588788dup			7978544	35835	20386	0	49
P-0014808-T01-IM6	SOMATIC	RET	ERCC6	10	10	43611216	50725257	Intron of RET(+): 816bp before exon 12	Intron of ERCC6(-): 7Kb after exon 5		GRCh37	INVERSION	41	30	Protein fusion: out of frame (RET-ERCC6)	PRECISE	3to3	RET (NM_020975) - ERCC6 (NM_000124) rearrangement: c.2137-816:RET_c.1397+6822:ERCC6inv	yes	unknown	7114041	22613	24698	0	27
P-0019663-T01-IM6	SOMATIC	RET	ATXN2	12	10	111918446	43608640	Intron of ATXN2(-):5Kb after exon 18	Intron of RET(+):229bp after exon 9		GRCh37	TRANSLOCATION			RET-ATXN2 Fusion	PRECISE	3to5	RET (NM_020975) - ATXN2 (NM_002973) Rearrangement : t(10;12)(q11.21;q24.13)(chr10:g.43608640:chr12:g.111918446)			0	0	0	0	42
P-0034357-T01-IM6	SOMATIC	RET	RET	20	10	456852	43611134	IGR: 6Kb before CSNK2A1(-)	Intron of RET(+):897bp before exon 12		GRCh37	TRANSLOCATION	10	32	RET-intragenic	PRECISE	3to3	RET (NM_020975) rearrangement: t(10;20)(q11.21;p13)(chr10:g.43611134::chr20:g.456852)	yes	unknown	0	0	0	0	31
P-0073401-T01-IM7	SOMATIC	RET	RET	10	10	32303364	43609072	3-UTR of KIF5B(-):1Kb after coding stop	Exon 10 of RET(+)		GRCh37	INVERSION	0	5	RET-intragenic	IMPPRECISE	3to3	RET (NM_020975) rearrangement: c.1828:RET_chr10:g.32303364inv	yes	unknown	11305708	87404	12796	0	5
P-0012605-T02-IM7	SOMATIC	RET	OR13A1	10	10	43610045	45818338	Exon 11 of RET(+)	IGR: 20Kb before OR13A1(-)		GRCh37	DELETION	10	52	RET-intragenic	PRECISE	3to5	RET (NM_020975) rearrangement: c.1997:RET_chr10:g.45818338del	yes	unknown	2208293	29312	24331	0	54
P-0014844-T01-IM6	SOMATIC	RET		10	4	43606798	117039927	Exon 7 of RET(+)	IGR: 181Kb before MIR1973(+)		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	3to5	RET (NM_020975) rearrangement: t(4;10)(q26;q11.21)(chr4:g.117039927)(chr10:g.43606798)			0	0	0	0	26
P-0017724-T01-IM6	SOMATIC	RET		10	10	43149839	43606634	IGR: 19Kb before LINC01518(-)	Intron of RET(+):20bp before exon 7		GRCh37	DELETION			RET-intragenic	PRECISE	3to5	RET (NM_020975) rearrangement : g.43149839_c.1264-2:RETdel			456795	14546	13663	0	9
P-0019802-T01-IM6	SOMATIC	RET		10	8	43610696	125313999	Intron of RET(+):512bp after exon 11	IGR: 9Kb before TMEM65(-)		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	5to5	RET (NM_020975) Rearrangement : t(8;10)(q24.13;q11.21)(chr8:g.125313999::chr10:g.43610696)			0	0	0	0	20
P-0024559-T01-IM6	SOMATIC	RET		10	10	32186894	43610782	Intron of ARHGAP12(-):10Kb after exon 3	Intron of RET(+):598bp after exon 11		GRCh37	DELETION			RET-intragenic	PRECISE	3to5	RET (NM_020975) rearrangement: chr10:g.32186894_c.2136+598del			11423888	73668	56855	0	32
P-0025395-T01-IM6	SOMATIC	RET		10	10	43600382	54301305	Intron of RET(+):17bp before exon 4	IGR: 91Kb before LINC01468(-)		GRCh37	INVERSION			RET-intragenic	PRECISE	5to5	RET (NM_020975) rearrangement: c.626-18:RET_chr10:g.54301305inv			10700923	68856	114067	0	43
P-0029997-T01-IM6	SOMATIC	RET		10	10	43611268	92431103	Intron of RET(+):763bp before exon 12	IGR: 69Kb before HTR7(-)		GRCh37	DELETION			RET-intragenic	PRECISE	3to5	RET (NM_020975) rearrangement: c.2137-764:RET_chr10:g.92431103del			48819835	161199	99649	0	27
P-0033417-T02-IM6	SOMATIC	RET		10	5	43600531	2070751	Exon 4 of RET(+)	IGR: 87Kb before MIR548BA(+)		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	5to3	RET (NM_020975) rearrangement: t(5;10)(p15.33;q11.21)(chr5:g.2070751::chr10:g.43600531)			0	0	0	0	9
P-0038524-T01-IM6	SOMATIC	RET		10	10	43609421	126580357	Intron of RET(+):298bp after exon 10	IGR: 50Kb before ZRANB1(+)		GRCh37	INVERSION			RET-intragenic	PRECISE	5to5	RET (NM_020975) Rearrangement : c.1879+298:RET_chr10:g.126580357inv			82970936	218457	267038	0	157
P-0039594-T01-IM6	SOMATIC	RET		19	10	11067799	43611995	IGR: 4Kb before SMARCA4(+)	Intron of RET(+):36bp before exon 12		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	5to3	RET (NM_020975) rearrangement: t(10;19)(q11.21;p13.2)(chr10:g.43611995::chr19:g.11067799)			0	0	0	0	209
P-0039604-T01-IM6	SOMATIC	RET		10	10	43611517	54088195	Intron of RET(+):514bp before exon 12	IGR: 14Kb before DKK1(+)		GRCh37	INVERSION			RET-intragenic	PRECISE	5to5	RET (NM_020975) rearrangement: c.2137-515:RET_chr10:g.54088195inv			10476678	30186	33240	0	11
P-0046296-T01-IM6	SOMATIC	RET		13	10	22535936	43611791	IGR: 89Kb before LINC00424(-)	Intron of RET(+):240bp before exon 12		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	5to3	RET (NM_020975) rearrangement: t(10;13)(q11.21;q12.11)(chr10:g.43611791::chr13:g.22535936)			0	0	0	0	5
P-0047598-T01-IM6	SOMATIC	RET		10	6	43608320	105903895	Exon 9 of RET(+)	IGR: 178Kb before PREP(-)		GRCh37	TRANSLOCATION			RET-intragenic	PRECISE	5to3	RET (NM_020975) rearrangement: t(6;10)(q21;q11.21)(chr6:g.105903895::chr10:g.43608320)			0	0	0	0	6
P-0081618-T02-IM7	SOMATIC	RET		10	8	43611819	91302986	Intron of RET(+):212bp before exon 12	5-UTR of LINC00534(+):97Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {LINC00534:RET}	PRECISE	5to3	RET (NM_020975) rearrangement: t(8;10)(q21.3;q11.21)(chr8:g.91302986::chr10:g.43611819)			0	0	0	0	57
P-0018112-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176153746	176157265	Intron of RFWD2(-):22bp after exon 2	Intron of RFWD2(-):3Kb before exon 2		GRCh37	INVERSION	10	16	Antisense Fusion	PRECISE	5to5	RFWD2 (NM_022457) rearrangement: c.408-3437_c.467+23inv	yes	unknown	3519	982	879	0	22
P-0032044-T01-IM6	SOMATIC	RFWD2		1	1	176145143	176153769	Exon 3 of RFWD2(-)	Exon 2 of RFWD2(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RFWD2 (NM_022457) rearrangement: c.467_c.468del			8626	613	279	0	7
P-0055952-T01-IM6	SOMATIC	RFWD2	NTRK1	1	1	156851106	175937617	Intron of NTRK1(+):142bp before exon 17	Intron of RFWD2(-):18Kb after exon 18		GRCh37	INVERSION			Protein Fusion: in frame  {RFWD2:NTRK1}	PRECISE	5to5	RFWD2 (NM_022457) - NTRK1 (NM_002529) rearrangement: c.2133+18462:RFWD2_c.2206-143:NTRK1inv			19086511	78915	125077	0	5
P-0015689-T01-IM6	SOMATIC	RFWD2		1	1	176105709	180459257	Intron of RFWD2(-): 26bp before exon 7	Intron of ACBD6(-): 2Kb after exon 3		GRCh37	INVERSION			RFWD2-intragenic	PRECISE	3to3	RFWD2 (NM_022457) rearrangement : c.832-26:RFWD2_g.180459257inv			4353548	14048	18505	0	15
P-0015219-T01-IM6	SOMATIC	RFX1	MLL4	19	19	14088444	36221797	Intron of RFX1(-): 360bp after exon 8	Intron of MLL4(+): 29bp after exon 26		GRCh37	INVERSION	19	11	Protein fusion: out of frame (MLL4-RFX1)	PRECISE	3to3	MLL4 (NM_014727) - RFX1 (NM_002918) rearrangement: c.929+360:MLL4_c.5437+29:RFX1inv	yes	unknown	22133353	555463	469031	0	8
P-0074346-T01-IM7	SOMATIC	RGL4	SMARCB1	22	22	24037739	24146484	Intron of RGL4(+):533bp after exon 6	Intron of SMARCB1(+):875bp after exon 5		GRCh37	DELETION			Protein Fusion: out of frame  {RGL4:SMARCB1}	IMPPRECISE	3to5	RGL4 (NM_153615) - SMARCB1 (NM_003073) rearrangement: c.1086+533:RGL4_c.628+875:SMARCB1del			108745	14335	12558	0	19
P-0069688-T01-IM7	SOMATIC	RGS22	ERBB2	17	8	37865504	101025792	Intron of ERBB2(+):66bp before exon 4	Intron of RGS22(-):5Kb before exon 13		GRCh37	TRANSLOCATION	0	19	Protein Fusion: out of frame  {RGS22:ERBB2}	IMPPRECISE	5to5	RGS22 (NM_015668) - ERBB2 (NM_004448) fusion: t(8;17)(q22.2;q12)(chr8:g.101025792::chr17:g.37865504)	yes	unknown	0	0	0	0	20
P-0064764-T01-IM7	SOMATIC	RGS3	BRAF	9	7	116291333	140493282	Intron of RGS3(+):167bp before exon 16	Intron of BRAF(-):825bp after exon 8		GRCh37	TRANSLOCATION	10	38	Protein Fusion: out of frame  {RGS3:BRAF}	PRECISE	3to3	RGS3 (NM_144488) - BRAF (NM_004333) fusion: t(7;9)(q34;q32)(chr7:g.140493282::chr9:g.116291333)	yes	unknown	0	0	0	0	38
P-0073763-T01-IM7	SOMATIC	RGS7	FH	1	1	241484860	241663559	Intron of RGS7(-):34Kb after exon 2	Intron of FH(-):177bp after exon 9		GRCh37	INVERSION	3	6	Antisense Fusion	PRECISE	5to5	FH (NM_000143) rearrangement: c.1390+178:FH_chr1:g.241484860inv	yes	unknown	178699	1338	2030	0	6
P-0042863-T01-IM6	SOMATIC	RHEB	RHEB	7	7	151167461	151216548	Intron of RHEB(-):195bp after exon 7	Exon 1 of RHEB(-)		GRCh37	INVERSION	8	3	Antisense Fusion	PRECISE	5to5	RHEB (NM_005614) rearrangement: c.50_c.462+196inv	yes	unknown	49087	6313	4763	0	5
P-0020546-T01-IM6	SOMATIC	RHEB	RHEB	7	7	151216582	151218860	Exon 1 of RHEB(-)	Promoter of RHEB(-):56Kb from tx start		GRCh37	DELETION	10	28	Deletion within transcript : mid-exon	PRECISE	3to5	RHEB (NM_005614) rearrangment: chr7:g.151218860_c.16:RHEBdel	yes	unknown	2278	477	319	0	34
P-0064653-T01-IM7	SOMATIC	RHEB	ACTR3B	7	7	151216474	152528990	Intron of RHEB(-):71bp after exon 1	Intron of ACTR3B(+):7Kb after exon 9		GRCh37	INVERSION	10	20	Protein Fusion: out of frame  {RHEB:ACTR3B}	PRECISE	5to5	RHEB (NM_005614) - ACTR3B (NM_020445) rearrangement: c.52+72:RHEB_c.951+6783:ACTR3Binv	yes	unknown	1312516	65299	177348	0	47
P-0025823-T01-IM6	SOMATIC	RHEB	DNAJB6	7	7	151168377	157166988	Intron of RHEB(-):102bp after exon 6	Intron of DNAJB6(+):7Kb after exon 5		GRCh37	INVERSION	10	16	Protein Fusion: out of frame  {RHEB:DNAJB6}	PRECISE	5to5	RHEB (NM_005614) - DNAJB6 (NM_058246) rearrangement: c.380+103:RHEB_c.346+6811:DNAJB6inv	yes	unknown	5998611	102884	107616	0	21
P-0013867-T01-IM5	SOMATIC	RHOA	SUCLG2	3	3	49397702	67552219	Exon 5 of RHOA(-)	Intron of SUCLG2(-): 4Kb before exon 8		GRCh37	INVERSION	54	26	Antisense fusion	PRECISE	5to5	RHOA (NM_001664) Rearrangement : c.522:RHOA_c.758-3500:SUCLG2inv	yes	unknown	18154517	257825	253600	0	26
P-0044179-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	39003589	39004844	Intron of RICTOR(-):70bp after exon 4	Intron of RICTOR(-):1Kb before exon 4		GRCh37	DUPLICATION	10	34	Duplication of 1 exon : out of frame	PRECISE	5to3	RICTOR (NM_152756) rearrangement: c.196-1120_c.260+71dup	yes	unknown	1255	626	1065	0	37
P-0048875-T03-IM6	SOMATIC	RICTOR	FYB	5	5	39074209	39174771	Intron of RICTOR(-):3bp after exon 2	Intron of FYB(-):21Kb before exon 3		GRCh37	DUPLICATION			Protein Fusion: in frame  {RICTOR:FYB}	PRECISE	5to3	RICTOR (NM_152756) - FYB (NM_001243093) rearrangement: c.97+4:RICTOR_c.1166-21065:FYBdup			100562	1223	4935	0	57
P-0055380-T01-IM6	SOMATIC	RICTOR	SLC25A21	14	5	37620744	38962587	Intron of SLC25A21(-):21Kb after exon 1	Exon 18 of RICTOR(-)		GRCh37	TRANSLOCATION	10	20	Protein Fusion: mid-exon  {RICTOR:SLC25A21}	PRECISE	3to5	RICTOR (NM_152756) - SLC25A21 (NM_030631) rearrangement: t(5;14)(p13.1;q13.3)(chr5:g.38962587::chr14:g.37620744)	yes	unknown	0	0	0	0	21
P-0037971-T01-IM6	SOMATIC	RICTOR	TTC33	5	5	38946536	40729443	Intron of RICTOR(-):33bp after exon 33	Intron of TTC33(-):865bp before exon 4		GRCh37	DUPLICATION	9	4	Protein Fusion: out of frame  {RICTOR:TTC33}	PRECISE	5to3	RICTOR (NM_152756) - TTC33 (NM_012382) rearrangement: c.4399+34:RICTOR_c.304-865:TTC33dup	yes	unknown	1782907	38679	58052	0	4
P-0046552-T01-IM6	SOMATIC	RICTOR	RICTOR	20	5	50693085	39074150	IGR: 7Kb before ZFP64(-)	Intron of RICTOR(-):62bp after exon 2		GRCh37	TRANSLOCATION	8	6	RICTOR-intragenic	PRECISE	3to5	RICTOR (NM_152756) rearrangement: t(5;20)(p13.1;q13.2)(chr5:g.39074150::chr20:g.50693085)	yes	unknown	0	0	0	0	6
P-0037253-T01-IM6	SOMATIC	RICTOR	PARP8	5	5	38975633	49952642	Intron of RICTOR(-):5bp after exon 10	IGR: 9Kb before PARP8(+)		GRCh37	DELETION	10	13	RICTOR-intragenic	PRECISE	3to5	RICTOR (NM_152756) rearrangement: c.889+6:RICTOR_chr5:g.49952642del	yes	unknown	10977009	11444	15778	0	13
P-0068644-T01-IM7	SOMATIC	RICTOR	RICTOR	5	5	1751754	39074468	IGR: 43Kb before MIR4277(-)	Exon 1 of RICTOR(-)		GRCh37	INVERSION	10	17	RICTOR-intragenic	PRECISE	5to5	RICTOR (NM_152756) rearrangement: c.12:RICTOR_chr5:g.1751754inv	yes	unknown	37322714	179330	301937	0	17
P-0073294-T01-IM7	SOMATIC	RICTOR	LINC02104	5	5	38967504	39771061	Exon 13 of RICTOR(-)	IGR: 251Kb before LOC101926940(+)		GRCh37	DELETION	10	17	RICTOR-intragenic	PRECISE	3to5	RICTOR (NM_152756) rearrangement: c.1086:RICTOR_chr5:g.39771061del	yes	unknown	803557	12428	19772	0	17
P-0025207-T01-IM6	SOMATIC	RICTOR		5	5	38944608	39130440	Exon 36 of RICTOR(-)	Intron of FYB(-):251bp after exon 10		GRCh37	INVERSION			RICTOR-intragenic	PRECISE	3to3	RICTOR (NM_152756) rearrangement: c.4853:RICTOR_chr5:g.39130440inv			185832	43210	24223	0	2
P-0031005-T01-IM6	SOMATIC	RICTOR		5	5	38950470	44977508	Exon 31 of RICTOR(-)	IGR: 168Kb before MRPS30(+)		GRCh37	DELETION			RICTOR-intragenic	PRECISE	3to5	RICTOR (NM_152756) rearrangement: c.3480:RICTOR_chr5:g.44977508del			6027038	31307	55050	0	52
P-0019978-T01-IM6	SOMATIC	RIT1	NOS1AP	1	1	155880420	162106434	Intron of RIT1(-):26bp after exon 2	Intron of NOS1AP(+):18Kb before exon 2		GRCh37	INVERSION	10	22	Protein Fusion: out of frame  {RIT1:NOS1AP}	PRECISE	5to5	RIT1 (NM_006912) -  NOS1AP (NM_014697) Rearrangement: c.106+27:RIT1_c.106-17761:NOS1APinv	yes	unknown	6226014	111160	109788	0	24
P-0021826-T01-IM6	SOMATIC	RIT1	PMF1	1	1	155880066	156194609	Intron of RIT1(-):174bp after exon 3	Intron of PMF1-BGLAP(+):11Kb before exon 2		GRCh37	INVERSION			Protein Fusion: out of frame  {RIT1:PMF1-BGLAP}	PRECISE	5to5	RIT1 (NM_006912) - PMF1-BGLAP (NM_001199662) rearrangement: c.163+175:RIT1_c.162-7502:PMF1-BGLAPinv			314543	3982	14496	0	10
P-0066698-T01-IM7	SOMATIC	RIT1	RIT1	1	1	155870088	155874052	3-UTR of RIT1(-):90bp after coding stop	Intron of RIT1(-):49bp after exon 5		GRCh37	INVERSION	10	21	RIT1-intragenic	PRECISE	5to5	RIT1 (NM_006912) rearrangement: c.429+50:RIT1_chr1:g.155870088inv	yes	unknown	3964	1763	4481	0	22
P-0002075-T01-IM3	SOMATIC	RIT1		1	1	152308085	155874218	IGR: 13Kb before FLG2(-)	Exon 5 of RIT1(-)		GRCh37	DELETION			RIT1-intragenic	PRECISE	3to5	RIT1 (NM_006912) Deletion : c.313_g.152308085del			3566133	13485	23153	0	23
P-0063660-T01-IM7	SOMATIC	RLF	TMEM61								GRCh37				RLF-TMEM61 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: RLF-TMEM61 fusion. Note: The rearrangement is an in-frame fusion between genes RLF Exon1 (NM_012421) and TMEM61 Exon2 (NM_182532). Note2: The functional significance of this fusion is unknown.	yes	unknown					
P-0044768-T01-IM6	SOMATIC	RNF145	FGFR2	10	5	123243127	158598146	Intron of FGFR2(-):84bp after exon 17	Intron of RNF145(-):1Kb before exon 7		GRCh37	TRANSLOCATION	10	105	Protein Fusion: out of frame  {RNF145:FGFR2}	PRECISE	3to5	RNF145 (NM_144726) - FGFR2 (NM_000141) rearrangement: t(5;10)(q33.3;q26.13)(chr5:g.158598146::chr10:g.123243127)	yes	unknown	0	0	0	1	110
P-0068618-T01-IM7	SOMATIC	RNF175	FBXW7	4	4	153268332	154643367	Intron of FBXW7(-):109bp before exon 4	Intron of RNF175(-):1Kb after exon 5		GRCh37	DELETION	10	19	Protein Fusion: in frame  {RNF175:FBXW7}	PRECISE	3to5	RNF175 (NM_173662) - FBXW7 (NM_033632) rearrangement: c.509+1136:RNF175_c.585-109:FBXW7del	yes	unknown	1375035	8145	13087	0	19
P-0024206-T01-IM6	SOMATIC	RNF213	RPTOR	17	17	78359671	78866473	Intron of RNF213(+):250bp after exon 61	Intron of RPTOR(+):55bp before exon 19		GRCh37	DELETION	10	47	Protein Fusion: in frame  {RNF213:RPTOR}	PRECISE	3to5	RNF213 (NM_001256071) - RPTOR (NM_020761) rearrangement: c.14539+250:RNF213_c.2102-56:RPTORdel	yes	unknown	506802	33344	70022	0	48
P-0012145-T01-IM5	SOMATIC	RNF43	ALDH4A1	17	1	56434626	19206599	Intron of RNF43(-): 203bp after exon 9	Intron of ALDH4A1(-): 732bp before exon 9		GRCh37	TRANSLOCATION	23	12	Antisense fusion	PRECISE	5to5	RNF43 (NM_017763) rearrangement: t(1;17)(p36.13;q22)(chr1:g.19206599::chr17:g.56434626)	yes	unknown	0	0	0	0	12
P-0023192-T01-IM6	SOMATIC	RNF43	HSF5	17	17	56492816	56511985	Exon 2 of RNF43(-)	Intron of HSF5(-):12Kb before exon 6		GRCh37	INVERSION	9	9	Antisense Fusion	PRECISE	5to5	RNF43 (NM_017763) rearrangement: c.123:RNF43_chr17:g.56511985inv	yes	unknown	19169	686	699	0	9
P-0081578-T01-IM7	SOMATIC	RNF43		17	10	56440931	6560878	Exon 4 of RNF43(-)	5-UTR of PRKCQ(-):91Kb before coding start		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	RNF43 (NM_017763) rearrangement: t(10;17)(p15.1;q22)(chr10:g.6560878::chr17:g.56440931)			0	0	0	0	25
P-0004389-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56433547	56437466	Intron of RNF43(-): 1Kb before exon 10	Intron of RNF43(-): 44bp after exon 8		GRCh37	DELETION	4	7	Deletion of 1 exon: in frame	PRECISE	3to5	RNF43 (NM_017763) rearrangement: c.952+44_c.2309-120del	yes	unknown	3919	8400	6412	0	7
P-0070262-T01-IM7	SOMATIC	RNF43	RNF43	17	17	56428136	56434548	Promoter of RNF43(-):3Kb from tx start	Intron of RNF43(-):280bp after exon 9		GRCh37	DELETION	10	22	Deletion within transcript	PRECISE	3to5	RNF43 (NM_017763) rearrangement: c.2308+281:RNF43_chr17:g.56428136del	yes	unknown	6412	1354	578	0	28
P-0043039-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56438444	56439937	Intron of RNF43(-):139bp before exon 7	Exon 6 of RNF43(-)		GRCh37	DELETION	10	176	Deletion within transcript : mid-exon	PRECISE	3to5	RNF43 (NM_017763) rearrangement: c.655_c.688-139del	yes	unknown	1493	793	333	0	195
P-0062310-T02-IM7	SOMATIC	RNF43	RNF43	17	17	56430890	56437577	Promoter of RNF43(-):147bp from tx start	Exon 8 of RNF43(-)		GRCh37	DELETION	10	65	Deletion within transcript : mid-exon	PRECISE	3to5	RNF43 (NM_017763) rearrangement: c.885:RNF43_chr17:g.56430890del	yes	unknown	6687	14774	14917	0	65
P-0035528-T01-IM6	SOMATIC	RNF43		17	17	56435392	56462849	Exon 9 of RNF43(-)	Intron of RNF43(-):14Kb before exon 3		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	RNF43 (NM_017763)  rearrangement: c.253-14455_c.1745del			27457	14966	14230	0	37
P-0007065-T01-IM5	SOMATIC	RNF43		17	17	56435989	56485483	Exon 9 of RNF43(-)	Intron of RNF43(-): 7Kb after exon 2		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	RNF43 (NM_017763) rearrangement :  c.252+7204_c.1148del			49494	15314	13328	0	13
P-0004140-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56437948	56451892	Intron of RNF43(-): 196bp after exon 7	Intron of RNF43(-): 3Kb before exon 3		GRCh37	DUPLICATION	9	5	Duplication of 5 exons: in frame	PRECISE	5to3	RNF43(NM_017763) Rearrangement: c.849+196_253-3498dup	yes	unknown	13944	8391	8966	0	5
P-0052874-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56491504	56492925	Intron of RNF43(-):1Kb after exon 2	Exon 2 of RNF43(-)		GRCh37	DUPLICATION	10	6	Duplication within transcript : mid-exon	PRECISE	5to3	RNF43 (NM_017763) rearrangement: c.14_c.252+1183dup	yes	unknown	1421	1309	1159	0	5
P-0036857-T02-IM6	SOMATIC	RNF43	LEMD3	17	12	56434728	65633870	Intron of RNF43(-):100bp after exon 9	Intron of LEMD3(+):45bp before exon 8		GRCh37	TRANSLOCATION	10	5	Protein Fusion: in frame  {LEMD3:RNF43}	PRECISE	3to3	LEMD3 (NM_014319) - RNF43 (NM_017763) rearrangement: t(12;17)(q14.3;q22)(chr12:g.65633870::chr17:g.56434728)	yes	unknown	0	0	0	0	5
P-0072072-T01-IM7	SOMATIC	RNF43	BRIP1	17	17	56439683	59913493	Intron of RNF43(-):221bp after exon 6	Intron of BRIP1(-):11Kb after exon 6		GRCh37	DUPLICATION	9	14	Protein Fusion: in frame  {RNF43:BRIP1}	PRECISE	5to3	RNF43 (NM_017763) - BRIP1 (NM_032043) rearrangement: c.687+222:RNF43_c.627+10969:BRIP1dup	yes	unknown	3473810	42425	145019	0	14
P-0050088-T01-IM6	SOMATIC	RNF43	CLTC	17	17	56440822	57721004	Intron of RNF43(-):55bp before exon 5	Intron of CLTC(+):632bp before exon 2		GRCh37	INVERSION	0	8	Protein Fusion: in frame  {RNF43:CLTC}	IMPPRECISE	5to5	RNF43 (NM_017763) - CLTC (NM_004859) rearrangement: c.451-55:RNF43_c.43-633:CLTCinv	yes	unknown	1280182	18009	164459	0	8
P-0018948-T02-IM6	SOMATIC	RNF43	PLXDC1	17	17	37293990	56438363	Intron of PLXDC1(-):2Kb after exon 2	Intron of RNF43(-):58bp before exon 7		GRCh37	DELETION	10	8	Protein Fusion: in frame  {RNF43:PLXDC1}	PRECISE	3to5	RNF43 (NM_017763) -PLXDC1 (NM_020405) Rearrangement : c.688-58:RNF43_c.255+1917:PLXDC1del	yes	unknown	19144373	503327	829249	0	8
P-0004433-T01-IM5	SOMATIC	RNF43	BCAS3	17	17	56440006	59452393	Exon 6 of RNF43(-)	Intron of BCAS3(+): 7Kb after exon 23		GRCh37	INVERSION	41	33	Protein fusion: mid-exon (BCAS3-RNF43)	PRECISE	3to3	RNF43 (NM_017763) Rearrangement : c.586:RNF43_chr17.g.59452393inv	yes	unknown	3012387	71240	89736	0	33
P-0008868-T01-IM5	SOMATIC	RNF43	MTMR4	17	17	56492693	56579447	Exon 2 of RNF43(-)	Intron of MTMR4(-): 2Kb after exon 15		GRCh37	DELETION	24	13	Protein fusion: mid-exon (MTMR4-RNF43)	PRECISE	3to5	MTMR4 (NM_004687) - RNF43 (NM_017763) rearrangement: c.1811+1658:MTMR4_c.246:RNF43del	yes	unknown	86754	1237	759	0	12
P-0063815-T01-IM7	SOMATIC	RNF43	RNF43	17	17	21889035	56440569	IGR: 15Kb before FLJ36000(+)	Intron of RNF43(-):66bp after exon 5		GRCh37	DELETION	10	20	RNF43-intragenic	PRECISE	3to5	RNF43 (NM_017763) rearrangement: c.582+67:RNF43_chr17:g.21889035del	yes	unknown	34551534	593161	735126	0	24
P-0031535-T01-IM6	SOMATIC	RNF43		17	17	50493839	56440694	IGR: 569Kb before C17orf112(+)	Exon 5 of RNF43(-)		GRCh37	INVERSION			RNF43-intragenic	PRECISE	5to5	RNF43 (NM_017763) rearrangement: c.524:RNF43_chr17:g.50493839inv			5946855	37859	15884	0	13
P-0020484-T01-IM6	SOMATIC	RNF43	TANC2	17	17	56492944	61251625	5-UTR of RNF43(-):61Kb before coding start	Intron of TANC2(+):20Kb before exon 4		GRCh37	INVERSION	10	15	Transcript Fusion {TANC2:RNF43}	PRECISE	3to3	RNF43 (NM_017763) Rearrangement : c.-6:RNF43_chr17:g.61251625inv	yes	unknown	4758681	80576	79343	0	15
P-0006622-T01-IM5	SOMATIC	RNFT1	PPM1D	17	17	58037652	58677869	Intron of RNFT1(-): 123bp before exon 4	Exon 1 of PPM1D(+)		GRCh37	INVERSION	58	20	Protein fusion: mid-exon (RNFT1-PPM1D)	PRECISE	5to5	RNFT1 (NM_016125) - PPM1D (NM_003620) rearrangement : c.592-123:RNFT1_c.94:PPM1Dinv	yes	unknown	640217	3339	3265	0	19
P-0074150-T01-IM7	SOMATIC	RNLS	PTEN	10	10	89690841	90058729	Exon 4 of PTEN(+)	Intron of RNLS(-):15Kb after exon 6		GRCh37	INVERSION	10	22	Protein Fusion: mid-exon  {RNLS:PTEN}	PRECISE	5to5	RNLS (NM_001031709) - PTEN (NM_000314) rearrangement: c.877-13466:RNLS_c.248:PTENinv	yes	unknown	367888	4577	1708	0	25
P-0018378-T01-IM6	SOMATIC	ROCK1	NRG1								GRCh37				ROCK1-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ROCK1-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes ROCK1 Exon2 (NM_005406) and NRG1 Exon2 (NM_013956). This fusion was detected with low read support. The functional significance of this fusion unclear.	yes	unknown					
P-0000036-T01-IM3	SOMATIC	ROS1	SLC34A2	6	4	117662374	25667150	Exon 30 of ROS1(-)	Intron of SLC34A2(+): 600bp before exon 5		GRCh37	TRANSLOCATION	17	6	Antisense fusion	FFPE-PooledNormal_bc	5to3		yes	unknown	0	0	0	0	0
P-0064410-T03-IM7	SOMATIC	ROS1	ROS1	11	6	40353526	117645071	5-UTR of LRRC4C(-):218Kb before coding start	Intron of ROS1(-):423bp after exon 34		GRCh37	TRANSLOCATION	10	46	Antisense Fusion	PRECISE	5to5	ROS1 (NM_002944) rearrangement: t(6;11)(q22.1;p12)(chr6:g.117645071::chr11:g.40353526)	yes	unknown	0	0	0	0	61
P-0016175-T01-IM6	SOMATIC	ROS1		6	6	66194183	117647325	Intron of EYS(-):6Kb after exon 5	Intron of ROS1(-):61bp after exon 33		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	ROS1 (NM_002944) rearrangement: g.66194183_c.5557+62:ROS1inv			51453142	190062	234373	0	96
P-0022372-T01-IM6	SOMATIC	ROS1		6	6	117649031	117704135	Intron of ROS1(-):1Kb before exon 33	Intron of ROS1(-):344bp after exon 16		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	ROS1 (NM_002944) rearrangement: c.2496+345_c.5367-1454inv			55104	95691	54886	0	34
P-0037693-T01-IM6	SOMATIC	ROS1		6	6	117725507	117731222	Exon 5 of ROS1(-)	Intron of ROS1(-):417bp before exon 4		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	ROS1 (NM_002944) Rearrangement : c.229-417_c.374inv			5715	2682	2830	0	26
P-0056737-T01-IM6	SOMATIC	ROS1		15	6	91816192	117659699	Intron of SV2B(+):4Kb after exon 8	Intron of ROS1(-):1Kb before exon 31		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to5	ROS1 (NM_002944) rearrangement: t(6;15)(q22.1;q26.1)(chr6:g.117659699::chr15:g.91816192)			0	0	0	0	21
P-0034559-T01-IM6	SOMATIC	ROS1		6	6	117643631	117646101	Intron of ROS1(-):1Kb before exon 35	Intron of ROS1(-):523bp before exon 34		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.5558-523_c.5642-1074del			2470	16876	19017	0	26
P-0063081-T02-IM7	SOMATIC	ROS1		6	6	117661549	117681902	Intron of ROS1(-):748bp after exon 30	Intron of ROS1(-):334bp before exon 22		GRCh37	DELETION			Deletion of 9 exons : in frame	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.3382-334_c.5079+749del			20353	12971	21734	0	10
P-0068064-T02-IM7	SOMATIC	ROS1		6	6	117631669	117632362	Intron of ROS1(-):225bp before exon 40	Intron of ROS1(-):82bp before exon 39		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	ROS1 (NM_002944) rearrangement: c.6136-82_c.6234-225dup			693	711	1566	0	14
P-0024516-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117703579	117714513	Intron of ROS1(-):900bp after exon 16	Intron of ROS1(-):29bp before exon 11		GRCh37	DUPLICATION	10	43	Duplication of 6 exons : in frame	PRECISE	5to3	ROS1 (NM_002944) rearrangement: c.1165-29_c.2496+901dup	yes	unknown	10934	8651	15935	0	48
P-0021054-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647162	149783021	Intron of ROS1(-):224bp after exon 33	Intron of CD74(-):146bp before exon 7		GRCh37	TRANSLOCATION	10	94	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783021::chr6:g.117647162)	yes	unknown	0	0	0	0	102
P-0021228-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646295	149783729	Intron of ROS1(-):717bp before exon 34	Intron of CD74(-):513bp after exon 6		GRCh37	TRANSLOCATION	10	21	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43):t(5;6)(q32;q22.1)(chr5:g.149783729::chr6:g.117646295)	yes	unknown	0	0	0	0	21
P-0023617-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646444	149782946	Intron of ROS1(-):866bp before exon 34	Intron of CD74(-):71bp before exon 7		GRCh37	TRANSLOCATION	10	37	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_00102515) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149782946::chr6:g.117646444)	yes	unknown	0	0	0	0	36
P-0025107-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647170	149782204	Intron of ROS1(-):216bp after exon 33	Intron of CD74(-):16bp before exon 8		GRCh37	TRANSLOCATION	10	70	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149782204::chr6:g.117647170)	yes	unknown	0	0	0	0	70
P-0018222-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646209	149783915	Intron of ROS1(-):631bp before exon 34	Intron of CD74(-):327bp after exon 6		GRCh37	TRANSLOCATION	10	44	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783915::chr6:g.117646209)	yes	unknown	0	0	0	0	45
P-0026589-T02-IM6	SOMATIC	ROS1	CD74	6	5	117646032	149782990	Intron of ROS1(-):454bp before exon 34	Intron of CD74(-):115bp before exon 7		GRCh37	TRANSLOCATION	10	19	Protein Fusion: in frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) Fusion (CD74 exon6 fused to ROS1 exon34) : t(5;6)(q32;q22.1)(chr5:g.149782990::chr6:g.117646032)	yes	unknown	0	0	0	0	19
P-0020458-T01-IM6	SOMATIC	ROS1	EZR	6	6	117646033	159191589	Intron of ROS1(-):455bp before exon 34	Intron of EZR(-):206bp after exon 9		GRCh37	DELETION	0	24	Protein Fusion: in frame  {EZR:ROS1}	IMPPRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion (EZR exons 1-9 fused with ROS1 exons 34-43): c.1090+207:EZR_c.5558-455:ROS1del	yes	unknown	41545556	322248	208870	0	23
P-0065104-T01-IM7	SOMATIC	ROS1	CD74	6	5	117646386	149783694	Intron of ROS1(-):808bp before exon 34	Intron of CD74(-):548bp after exon 6		GRCh37	TRANSLOCATION	10	13	Protein Fusion: in frame  {ROS1:CD74}	PRECISE	5to3	ROS1 (NM_002944) - CD74 (NM_001025159) rearrangement: t(5;6)(q32;q22.1)(chr5:g.149783694::chr6:g.117646386)	yes	unknown	0	0	0	0	13
P-0012525-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647385	149783203	Intron of ROS1(-): 2bp after exon 33	Intron of CD74(-): 328bp before exon 7		GRCh37	TRANSLOCATION	21	11	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1(NM_002944) fusion (CD74 exons 1-6 with ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783203::chr6:g.117647385)	yes	unknown	0	0	0	0	3
P-0010760-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647234	149783763	Intron of ROS1(-): 153bp after exon 33	Intron of CD74(-): 480bp after exon 6		GRCh37	TRANSLOCATION	16	27	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(5q32;6q22.1)(chr5:g.149783763::chr6:g.117647234 )	yes	unknown	0	0	0	0	26
P-0004790-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646467	149782207	Intron of ROS1(-): 889bp before exon 34	Intron of CD74(-): 19bp before exon 7		GRCh37	TRANSLOCATION	21	42	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (exons 1-7 of CD74 fused to exons 34-43 of ROS1) : t(5;6)(q32;q22.1)(chr5:g.149782207::chr6:g.117646467)	yes	unknown	0	0	0	0	41
P-0008134-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646080	149783121	Intron of ROS1(-): 502bp before exon 34	Intron of CD74(-): 246bp before exon 7		GRCh37	TRANSLOCATION	27	34	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD274 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(5q32;6q22.1)(chr5:g.149783121::chr6:g.117646080  )	yes	unknown	0	0	0	0	27
P-0004336-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647249	149783071	Intron of ROS1(-): 138bp after exon 33	Intron of CD74(-): 196bp before exon 7		GRCh37	TRANSLOCATION	17	38	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 with ROS1 exons 34-43 ) : t(5;6)(5q32;6q22.1)(chr5:g.149783071::chr6:g.117647249)	yes	unknown	0	0	0	0	34
P-0007108-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646132	149783704	Intron of ROS1(-): 554bp before exon 34	Intron of CD74(-): 539bp after exon 6		GRCh37	TRANSLOCATION	41	85	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944)  fusion (CD74 exons 1 to 6 fused with ROS1 exons 34 to 43)  :  t(5;6)(chr5q32;chr6q22.1)(chr5:g.149783704::chr6:g.117646132)	yes	unknown	0	0	0	0	81
P-0002877-T01-IM3	SOMATIC	ROS1	CD74	6	5	117645870	149782435	Intron of ROS1(-): 292bp before exon 34	Intron of CD74(-): 247bp before exon 7		GRCh37	TRANSLOCATION	0	3	Protein fusion: in frame (CD74-ROS1)	IMPRECISE	3to5		yes	unknown	0	0	0	0	6
P-0000840-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646938	149783508	Intron of ROS1(-): 449bp after exon 33	Intron of CD74(-): 633bp before exon 7		GRCh37	TRANSLOCATION	5	3	Protein fusion: in frame (CD74-ROS1)	PRECISE	3to5	ROS1 (NM_002944) - CD74 (NM_001025158) Translocation:  t(6;5)(q22.1;q32)(chr6:g.117646938::chr5:g.149783508)	yes	unknown	0	0	0	0	9
P-0006047-T02-IM5	SOMATIC	ROS1	EZR	6	6	117647241	159191331	Intron of ROS1(-): 146bp after exon 33	Intron of EZR(-): 355bp before exon 10		GRCh37	DELETION	28	24	Protein fusion: in frame (EZR-ROS1)	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) fusion (EZR exons 1-9 with ROS1 exons 34-43): c.1091-355:EZR_c.5557+146:ROS1del	yes	unknown	41544090	427144	378221	0	22
P-0002707-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646946	149783660	Intron of ROS1(-): 441bp after exon 33	Intron of CD74(-): 583bp after exon 6		GRCh37	TRANSLOCATION	17	16	Protein fusion: in frame (ROS1-CD74)	PRECISE	5to3		yes	unknown	0	0	0	0	29
P-0002912-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646326	149783419	Intron of ROS1(-): 748bp before exon 34	Intron of CD74(-): 544bp before exon 7		GRCh37	TRANSLOCATION	10	4	Protein fusion: in frame (ROS1-CD74)	PRECISE	5to3		yes	unknown	0	0	0	0	17
P-0018513-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647544	149783804	Exon 33 of ROS1(-)	Intron of CD74(-):438bp after exon 6		GRCh37	TRANSLOCATION	10	116	Protein Fusion: mid-exon  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 33 to 43): t(5;6)(q32;q22.1)(chr5:g.149783804::chr6:g.117647544)	yes	unknown	0	0	0	0	126
P-0032722-T01-IM6	SOMATIC	ROS1	CD74	6	5	117645677	149782874	Intron of ROS1(-):99bp before exon 34	Exon 7 of CD74(-)		GRCh37	TRANSLOCATION	10	183	Protein Fusion: mid-exon  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944 ) fusion (CD74 exons 1-7 fused to ROS1 exons 34-43):  t(5;6)(q32;q22.1)(chr5:g.149782874::chr6:g.117645677)	yes	unknown	0	0	0	0	190
P-0004318-T01-IM5	SOMATIC	ROS1	EZR	6	6	117647543	159191783	Exon 33 of ROS1(-)	Intron of EZR(-): 13bp after exon 9		GRCh37	DELETION	15	16	Protein fusion: mid-exon (EZR-ROS1)	PRECISE	3to5	EZR (NM_003379) - ROS1 (NM_002944) rearrangement: c.1090+13:EZR_c.5401:ROS1del	yes	unknown	41544240	277853	306226	0	16
P-0016213-T01-IM6	SOMATIC	ROS1	CD74	6	5	117649786	149783418	Intron of ROS1(-):705bp after exon 32	Intron of CD74(-):543bp before exon 7		GRCh37	TRANSLOCATION	10	62	Protein Fusion: out of frame  {CD74:ROS1}	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149783418::chr6:g.117649786)	yes	unknown	0	0	0	0	63
P-0019111-T01-IM6	SOMATIC	ROS1	GOPC	6	6	117643452	117891885	Intron of ROS1(-):895bp before exon 35	Intron of GOPC(-):137bp after exon 6		GRCh37	DUPLICATION			Protein Fusion: out of frame  {ROS1:GOPC}	IMPPRECISE	5to3	ROS1 (NM_002944) - GOPC (NM_020399) rearrangement: c.5642-895:ROS1_c.912+138:GOPCdup			248433	175526	176415	0	34
P-0075785-T03-IM7	SOMATIC	ROS1	PDHX	11	6	34961506	117658780	Intron of PDHX(+):8Kb before exon 3	Intron of ROS1(-):277bp before exon 31		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {ROS1:PDHX}	IMPPRECISE	5to5	ROS1 (NM_002944) - PDHX (NM_003477) rearrangement: t(6;11)(q22.1;p13)(chr6:g.117658780::chr11:g.34961506)			0	0	0	0	7
P-0016046-T01-IM6	SOMATIC	ROS1	SLC34A2	6	4	117662059	25667671	Intron of ROS1(-):238bp after exon 30	Intron of SLC34A2(+):78bp before exon 5		GRCh37	TRANSLOCATION	10	28	Protein Fusion: out of frame  {SLC34A2:ROS1}	PRECISE	3to3	ROS1 (NM_002944) - SLC34A2(NM_006424) fusion: t(4;6) (p15;q22)(chr4:g.25667671::chr6:g.117662059)	yes	unknown	0	0	0	0	27
P-0040134-T01-IM6	SOMATIC	ROS1	TPM3	6	1	117647954	154135115	Intron of ROS1(-):377bp before exon 33	Intron of TPM3(-):5Kb before exon 7		GRCh37	TRANSLOCATION	10	51	Protein Fusion: out of frame  {TPM3:ROS1}	PRECISE	3to5	ROS1 (NM_002944) rearrangement: t(1;6)(q21.3;q22.1)(chr1:g.154135115::chr6:g.117647954)	yes	unknown	0	0	0	0	52
P-0004747-T01-IM5	SOMATIC	ROS1	CD74	6	5	117649107	149782561	Intron of ROS1(-): 1Kb after exon 32	Intron of CD74(-): 123bp after exon 7		GRCh37	TRANSLOCATION	14	13	Protein fusion: out of frame (CD74-ROS1)	PRECISE	3to5	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6) (q32;q22.1) (chr5:g.149782561::chr6:g.117649107)	yes	unknown	0	0	0	0	13
P-0001437-T01-IM3	SOMATIC	ROS1	CD74	6	5	117649412	149783504	Intron of ROS1(-): 1Kb after exon 32	Intron of CD74(-): 629bp before exon 7		GRCh37	TRANSLOCATION	12	10	Protein fusion: out of frame (CD74-ROS1)	PRECISE	3to5	None	yes	unknown	0	0	0	0	0
P-0000649-T01-IM3	SOMATIC	ROS1	CD74	6	5	117649880	149783491	Intron of ROS1(-): 612bp after exon 32	Intron of CD74(-): 616bp before exon 7		GRCh37	TRANSLOCATION	25	14	Protein fusion: out of frame (CD74-ROS1)	PRECISE	3to5		yes	unknown	0	0	0	0	0
P-0014437-T01-IM6	SOMATIC	ROS1	EZR	6	6	117650363	159191567	Intron of ROS1(-): 129bp after exon 32	Intron of EZR(-): 229bp after exon 9		GRCh37	DELETION	44	33	Protein fusion: out of frame (EZR-ROS1)	PRECISE	3to5	ROS1 (NM_002944) _EZR (NM_003379) rearrangement: c.1090+229:EZR_c.5366+129:ROS1del	yes	unknown	41541204	290568	269931	0	31
P-0003970-T01-IM5	SOMATIC	ROS1	EZR	6	6	117649698	159191654	Intron of ROS1(-): 794bp after exon 32	Intron of EZR(-): 142bp after exon 9		GRCh37	DELETION	35	24	Protein fusion: out of frame (EZR-ROS1)	PRECISE	3to5	ROS1 (NM_002944) - EZR ( NM_003379 ) rearrangement:  c.1090+142C:EZR_c.5366+794T:ROS1del	yes	unknown	41541956	268568	250331	0	30
P-0027879-T01-IM6	SOMATIC	ROS1	c.5778	6	6	47344251	117641662	IGR: 101Kb before CD2AP(+)	Intron of ROS1(-):469bp before exon 36		GRCh37	DELETION			ROS1-c.5778 Fusion	PRECISE	3to5	ROS1 (NM_002944) - c.5778-469:ROS1_chr6:g.47344251del			70297411	142972	245705	0	72
P-0007413-T01-IM5	SOMATIC	ROS1	ROS1	6	6	117663630	117671144	Exon 28 of ROS1(-)	Intron of ROS1(-): 3Kb after exon 26		GRCh37	INVERSION	45	54	ROS1-intragenic	PRECISE	3to3	ROS1(NM_002944.2) rearrangement : c.4602_c.4321+3009inv	yes	unknown	7514	2454	2301	0	51
P-0030943-T01-IM6	SOMATIC	ROS1	TBC1D32	6	6	117659596	121016948	Intron of ROS1(-):1Kb before exon 31	IGR: 384Kb before TBC1D32(-)		GRCh37	DELETION	10	48	ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.5080-1093:ROS1_chr6:g.121016948del	yes	unknown	3357352	77863	80048	0	52
P-0051159-T01-IM6	SOMATIC	ROS1	ENPP1	6	6	117658909	132216009	Intron of ROS1(-):406bp before exon 31	3-UTR of ENPP1(+):87Kb after coding stop		GRCh37	INVERSION	10	20	ROS1-intragenic	PRECISE	5to5	ROS1 (NM_002944) rearrangement: c.5080-406:ROS1_chr6:g.132216009inv	yes	unknown	14557100	54062	59440	0	22
P-0012273-T01-IM5	SOMATIC	ROS1		6	1	117650041	110685599	Intron of ROS1(-): 451bp after exon 32	IGR: 8Kb before SLC6A17(+)		GRCh37	TRANSLOCATION			ROS1-intragenic	PRECISE	5to5	ROS1 (NM_002944) rearrangement: t(1;6)(p13.3;q22.1)(chr1:g.110685599::chr6:g.117650041)			0	0	0	0	11
P-0016747-T01-IM6	SOMATIC	ROS1		6	6	117646784	126400977	Intron of ROS1(-):602bp after exon 33	IGR: 33Kb before MIR5695(-)		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) Rearrangement : c.5557+603:ROS1_chr6:g.126400977del			8754193	107108	232934	0	28
P-0016899-T01-IM6	SOMATIC	ROS1		6	6	112237905	117645775	IGR: 137Kb before WISP3(+)	Intron of ROS1(-):197bp before exon 34		GRCh37	INVERSION			ROS1-intragenic	PRECISE	5to5	ROS1 (NM_002944) rearrangement: c.5558-197:ROS1_chr6:g.112237905inv			5407870	43182	119004	0	48
P-0017459-T01-IM6	SOMATIC	ROS1		6	6	117659011	117776626	Intron of ROS1(-):508bp before exon 31	IGR: 27Kb before DCBLD1(+)		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) Rearrangement : c.5080-508:ROS1_chr6:g.117776626del			117615	61252	77399	0	3
P-0017608-T01-IM5	SOMATIC	ROS1		6	6	117643993	117886228	Intron of ROS1(-):1Kb before exon 35	Intron of DCBLD1(+):5Kb before exon 15		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.5642-1436:ROS1_chr6:g.117886228del			242235	84635	187448	0	9
P-0018378-T01-IM6	SOMATIC	ROS1		6	6	117710895	169216197	Exon 12 of ROS1(-)	IGR: 359Kb before LOC101929504(-)		GRCh37	INVERSION			ROS1-intragenic	PRECISE	3to3	ROS1 (NM_002944) Rearrangement : c.1377:ROS1_chr6:g.169216197inv			51505302	233533	185676	0	12
P-0020237-T01-IM6	SOMATIC	ROS1		6	6	30239323	117647689	3-UTR of HCG17(-):55Kb after coding stop	Intron of ROS1(-):112bp before exon 33		GRCh37	DELETION			ROS1-intragenic	IMPPRECISE	3to5	ROS1 (NM_002944) rearrangement: chr6:g.30239323_c.5367-112:ROS1del			87408366	669509	648886	0	3
P-0025103-T01-IM6	SOMATIC	ROS1		6	6	117645439	117884687	Intron of ROS1(-):55bp after exon 34	Intron of DCBLD1(+):6Kb before exon 15		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.5641+56:ROS1_chr6:g.117884687del			239248	104834	103022	0	8
P-0027411-T01-IM6	SOMATIC	ROS1		6	6	117287744	117609899	IGR: 89Kb before RFX6(+)	Exon 43 of ROS1(-)		GRCh37	INVERSION			ROS1-intragenic	PRECISE	3to3	ROS1 (NM_002944) rearrangement: c.6800:ROS1_chr6:g.117287744inv			322155	1864	2083	0	5
P-0027989-T01-IM6	SOMATIC	ROS1		18	6	46871756	117643946	Intron of DYM(-):12Kb before exon 7	Intron of ROS1(-):1Kb before exon 35		GRCh37	TRANSLOCATION			ROS1-intragenic	PRECISE	3to3	ROS1 (NM_002944) rearrangement: t(6;18)(q22.1;q21.1)(chr6:g.117643946::chr18:g.18:46871756)			0	0	0	0	5
P-0028529-T01-IM6	SOMATIC	ROS1		10	6	61807139	117658271	Intron of ANK3(-):5Kb before exon 43	Intron of ROS1(-):63bp after exon 31		GRCh37	TRANSLOCATION			ROS1-intragenic	PRECISE	3to3	ROS1 (NM_002944)  rearrangement: t(6;10)(q22.1;q21.2)(chr6:g.117658271::chr10:g.:61807139)			0	0	0	0	6
P-0028926-T01-IM6	SOMATIC	ROS1		6	6	117645958	160895908	Intron of ROS1(-):380bp before exon 34	3-UTR of LPAL2(-):36Kb after coding stop		GRCh37	INVERSION			ROS1-intragenic	PRECISE	3to3	ROS1 (NM_002944) rearrangement: c.5558-380:ROS1_chr6:g.160895908inv			43249950	257397	189052	0	5
P-0029460-T01-IM6	SOMATIC	ROS1		6	6	50511502	117632238	IGR: 170Kb before TFAP2D(+)	Exon 39 of ROS1(-)		GRCh37	INVERSION			ROS1-intragenic	PRECISE	5to5	ROS1 (NM_002944) Rearrangement:  c.6178:ROS1_chr6:g.50511502inv			67120736	140051	129008	0	10
P-0031476-T01-IM6	SOMATIC	ROS1		6	4	117642484	129304386	Exon 35 of ROS1(-)	IGR: 45Kb before LOC100507487(+)		GRCh37	TRANSLOCATION			ROS1-intragenic	IMPPRECISE	3to5	ROS1 (NM_002944) rearrangement: t(4;6)(q28.2;q22.1)(chr4:g.129304386::chr6:g.117642484)			0	0	0	0	20
P-0033315-T01-IM6	SOMATIC	ROS1		6	6	117642212	120602010	Intron of ROS1(-):209bp after exon 35	IGR: 799Kb before TBC1D32(-)		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.5777+210:ROS1_chr6:g.120602010del			2959798	134864	161361	0	28
P-0049305-T02-IM6	SOMATIC	ROS1		6	6	117715402	134256989	Exon 10 of ROS1(-)	IGR: 16Kb before TBPL1(+)		GRCh37	DELETION			ROS1-intragenic	PRECISE	3to5	ROS1 (NM_002944) rearrangement: c.1087:ROS1_chr6:g.134256989del			16541587	25812	34609	0	14
P-0049596-T01-IM6	SOMATIC	ROS1		6	1	117663729	10655707	Intron of ROS1(-):22bp before exon 28	Intron of PEX14(+):4Kb before exon 4		GRCh37	TRANSLOCATION			ROS1-intragenic	IMPPRECISE	3to5	ROS1 (NM_002944) rearrangement: t(1;6)(p36.22;q22.1)(chr1:g.10655707::chr6:g.117663729)			0	0	0	0	10
P-0058768-T01-IM7	SOMATIC	ROS1		20	6	43955067	117646105	3-UTR of SDC4(-):836bp after coding stop	Intron of ROS1(-):527bp before exon 34		GRCh37	TRANSLOCATION			ROS1-intragenic	PRECISE	5to3	ROS1 (NM_002944) rearrangement: t(6;20)(q22.1;q13.12)(chr6:g.117646105::chr20:g.43955067)			0	0	0	0	15
P-0058933-T02-IM7	SOMATIC	ROS1		6	2	117652974	112378450	Intron of ROS1(-):2Kb before exon 32	IGR: 147Kb before ANAPC1(-)		GRCh37	TRANSLOCATION			ROS1-intragenic	PRECISE	5to3	ROS1 (NM_002944) rearrangement: t(2;6)(q13;q22.1)(chr2:g.112378450::chr6:g.117652974)			0	0	0	0	7
P-0072861-T01-IM7	SOMATIC	ROS1		6	6	87788131	117658747	IGR: 7Kb before CGA(-)	Intron of ROS1(-):244bp before exon 31		GRCh37	INVERSION			ROS1-intragenic	PRECISE	5to5	ROS1 (NM_002944) rearrangement: c.5080-244:ROS1_chr6:g.87788131inv			29870616	187040	306444	0	48
P-0006921-T01-IM5	SOMATIC	ROS1	SLC34A2	6	4	117648517	25679037	Intron of ROS1(-): 940bp before exon 33	3-UTR of SLC34A2(+): 666bp after coding stop		GRCh37	TRANSLOCATION	34	51	SLC34A2-ROS1 fusion	PRECISE	3to5	ROS1 (NM_002944) - SLC34A2(NM_006424) rearrangement : t(4;6) (p15;q22)(chr4:g.25679037::chr6:g.117648517)	yes	unknown	0	0	0	0	50
P-0045550-T01-IM6	SOMATIC	ROS1		6	6	109069953	117650361	Promoter of LINC00222(+):3Kb from tx start	Intron of ROS1(-):130bp after exon 32		GRCh37	INVERSION			Transcript Fusion {LINC00222:ROS1}	PRECISE	3to3	ROS1 (NM_002944) rearrangement: c.5366+131:ROS1_chr6:g.109069953inv			8580408	104187	177520	0	98
P-0036702-T01-IM6	SOMATIC	ROS1		6	6	117711069	118032766	Intron of ROS1(-):60bp before exon 12	Promoter of NUS1(+):36Kb from tx start		GRCh37	INVERSION			Transcript Fusion {NUS1:ROS1}	IMPPRECISE	3to3	ROS1 (NM_002944) rearrangement: c.1263-60:ROS1_chr6:g.118032766inv			321697	13337	30896	0	34
P-0061804-T01-IM7	SOMATIC	ROS1	ROS1	17	6	7586142	117652132	5-UTR of TP53(-):13Kb before coding start	Intron of ROS1(-):2Kb before exon 32		GRCh37	TRANSLOCATION	10	45	Transcript Fusion {ROS1:TP53}	PRECISE	3to5	ROS1 (NM_002944) rearrangement: t(6;17)(q22.1;p13.1)(chr6:g.117652132::chr17:g.7586142)	yes	unknown	0	0	0	0	49
P-0042736-T01-IM6	SOMATIC	RPGRIP1L	FANCA	16	16	53727043	89839857	Intron of RPGRIP1L(-):767bp before exon 4	Intron of FANCA(-):65bp before exon 22		GRCh37	DUPLICATION	0	10	Protein Fusion: out of frame  {RPGRIP1L:FANCA}	IMPPRECISE	5to3	RPGRIP1L (NM_015272) - FANCA (NM_000135) rearrangement: c.231-767:RPGRIP1L_c.1901-65:FANCAdup	yes	unknown	36112814	280811	121484	0	10
P-0009813-T01-IM5	SOMATIC	RPLP0P2	RPS6KA4	11	11	61400293	64136064	5-UTR of RPLP0P2(+): 7Kb before coding start	Exon 11 of RPS6KA4(+)		GRCh37	INVERSION	42	32	Antisense fusion	PRECISE	3to3	RPS6KA4 (NM_003942) rearrangement : c.1325:RPS6KA4_chr11:g.61400293inv	yes	unknown	2735771	27428	27206	0	31
P-0032427-T01-IM6	SOMATIC	RPRD2	MCL1	1	1	150373570	150551493	Intron of RPRD2(+):17Kb before exon 2	Exon 1 of MCL1(-)		GRCh37	INVERSION	10	66	Protein Fusion: mid-exon  {RPRD2:MCL1}	PRECISE	3to3	RPRD2 (NM_015203) - MCL1 (NM_021960) rearrangement: c.206-16502:RPRD2_c.514:MCL1inv	yes	unknown	177923	4747	7704	0	78
P-0046632-T03-IM7	SOMATIC	RPS15	STK11	19	19	1219434	1438978	Intron of STK11(+):22bp after exon 3	Intron of RPS15(+):87bp after exon 2		GRCh37	DUPLICATION	0	12	Protein Fusion: in frame  {RPS15:STK11}	IMPPRECISE	5to3	RPS15 (NM_001018) - STK11 (NM_000455) rearrangement: c.89+87:RPS15_c.464+22:STK11dup	yes	unknown	219544	10533	17358	0	13
P-0014908-T01-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64043012	64137082	Intron of BAD(-): 4Kb before exon 2	Exon 13 of RPS6KA4(+)		GRCh37	DUPLICATION	81	29	Antisense fusion	PRECISE	5to3	RPS6KA4 (NM_003942) Rearrangement : c.188-3737:BAD_ c.1593:RPS6KA4dup	yes	unknown	94070	20900	24345	0	29
P-0039706-T01-IM6	SOMATIC	RPS6KA4		11	11	64132309	64136956	Intron of RPS6KA4(+):463bp before exon 9	Exon 13 of RPS6KA4(+)		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	RPS6KA4 (NM_003942) rearrangement: c.907-464_c.1467inv			4647	9545	8842	0	11
P-0012674-T01-IM5	SOMATIC	RPS6KA4	DOCK2	11	5	64135589	169409522	Intron of RPS6KA4(+): 15bp before exon 10	Intron of DOCK2(+): 550bp before exon 28		GRCh37	TRANSLOCATION	0	61	Protein fusion: in frame (DOCK2-RPS6KA4)	IMPRECISE	5to3	DOCK2 (NM_004946) - RPS6KA4 (NM_003942) rearrangement:t(5;11)(q35.1;q13.1)(chr5:g.169409522::chr11:g.64135589)	yes	unknown	0	0	0	0	61
P-0008215-T01-IM5	SOMATIC	RPS6KA4	RPS6KA4	11	11	64132691	64134809	Intron of RPS6KA4(+): 82bp before exon 9	Intron of RPS6KA4(+): 795bp before exon 10		GRCh37	INVERSION	20	17	RPS6KA4-intragenic	PRECISE	5to5	RPS6KA4 (NM_003942) rearrangement: c.907-82_c.1072-795inv	yes	unknown	2118	2178	1969	0	11
P-0023764-T01-IM6	SOMATIC	RPS6KB2	EXPH5	11	11	67200453	108447231	Exon 8 of RPS6KB2(+)	Intron of EXPH5(-):17Kb after exon 1		GRCh37	DELETION	8	2	Antisense Fusion	PRECISE	3to5	RPS6KB2 (NM_003952) rearrangement: c.647_chr11:g.108447231del	yes	unknown	41246778	284661	220720	0	2
P-0018833-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67196172	67197388	Intron of RPS6KB2(+):78bp after exon 1	Intron of RPS6KB2(+):322bp after exon 4		GRCh37	INVERSION	6	4	Antisense Fusion	PRECISE	3to3	RPS6KB2 (NM_003952) rearrangement : c.78+78_c.309+322inv	yes	unknown	1216	2395	2457	0	4
P-0019855-T01-IM6	SOMATIC	RPS6KB2	CORO1B	11	11	67200242	67209551	Exon 7 of RPS6KB2(+)	Exon 3 of CORO1B(-)		GRCh37	DUPLICATION			RPS6KB2-CORO1B Fusion	PRECISE	5to3	RPS6KB2 (NM_003952)  - CORO1B (NM_020441) rearrangement: c.550:RPS6KB2_c.210:CORO1Bdup			9309	13781	22838	0	76
P-0057758-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	59092673	67200976	IGR: 39Kb before OR5AN1(+)	Intron of RPS6KB2(+):58bp after exon 10		GRCh37	INVERSION	10	397	RPS6KB2-intragenic	PRECISE	3to3	RPS6KB2 (NM_003952) rearrangement: c.906+58:RPS6KB2_chr11:g.59092673inv	yes	unknown	8108303	101021	99043	0	396
P-0023899-T01-IM6	SOMATIC	RPS6KB2		11	11	67199260	80143138	Intron of RPS6KB2(+):274bp after exon 5	IGR: 319Kb before LOC101928944(-)		GRCh37	DELETION			RPS6KB2-intragenic	PRECISE	3to5	RPS6KB2 (NM_003952) rearrangement: c.457+274: RPS6KB2_chr11:g.80143138del			12943878	134992	146109	0	6
P-0032957-T01-IM6	SOMATIC	RPS6KB2		11	11	58202593	67199122	IGR: 4Kb before OR5B12(-)	Intron of RPS6KB2(+):136bp after exon 5		GRCh37	INVERSION			RPS6KB2-intragenic	PRECISE	3to3	RPS6KB2 (NM_003952) Rearrangement: c.457+136:RPS6KB2_chr11:g.58202593inv			8996529	57985	64168	0	28
P-0025683-T01-IM6	SOMATIC	RPTOR		17	17	74050297	78882651	Intron of SRP68(-):3Kb after exon 8	Exon 21 of RPTOR(+)		GRCh37	DUPLICATION			Antisense Fusion	IMPPRECISE	5to3	RPTOR (NM_020761) rearrangement: chr17:g.74050297_c.2442dup			4832354	33827	53816	0	5
P-0047450-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78935320	78937037	Intron of RPTOR(+):40bp after exon 31	Intron of RPTOR(+):180bp after exon 33		GRCh37	DELETION	10	188	Deletion of 2 exons : out of frame	PRECISE	3to5	RPTOR (NM_020761) rearrangement: c.3692+40_c.3939+180del	yes	unknown	1717	4798	4013	0	204
P-0033937-T01-IM6	SOMATIC	RPTOR		17	17	78563518	78923111	Intron of RPTOR(+):36Kb before exon 2	Intron of RPTOR(+):131bp before exon 28		GRCh37	DELETION			Deletion of 26 exons : out of frame	PRECISE	3to5	RPTOR (NM_020761) rearrangement: c.163-35973_c.3266-132del			359593	47462	29268	0	3
P-0037968-T01-IM6	SOMATIC	RPTOR		17	17	78919515	78926053	Exon 26 of RPTOR(+)	Intron of RPTOR(+):3Kb after exon 28		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	RPTOR (NM_020761) rearrangement: c.3074_c.3370+2706del			6538	4442	6074	0	5
P-0053220-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	65377868	78923312	Intron of PITPNC1(+):4Kb after exon 1	Exon 28 of RPTOR(+)		GRCh37	INVERSION	10	21	RPTOR-intragenic	PRECISE	5to5	RPTOR (NM_020761) rearrangement: c.3335:RPTOR_chr17:g.65377868inv	yes	unknown	13545444	111422	147875	0	27
P-0063217-T01-IM7	SOMATIC	RPTOR	RPTOR	20	17	32290912	78811809	3-UTR of PXMP4(-):5Kb after coding stop	Intron of RPTOR(+):12bp after exon 10		GRCh37	TRANSLOCATION	0	13	RPTOR-intragenic	IMPPRECISE	5to3	RPTOR (NM_020761) rearrangement: t(17;20)(q25.3;q11.22)(chr17:g.78811809::chr20:g.32290912)	yes	unknown	0	0	0	0	13
P-0069952-T01-IM7	SOMATIC	RPTOR	PSMG3	17	7	78811678	1600795	Intron of RPTOR(+):43bp before exon 10	IGR: 6Kb before PSMG3(-)		GRCh37	TRANSLOCATION	10	43	RPTOR-intragenic	PRECISE	3to3	RPTOR (NM_020761) rearrangement: t(7;17)(p22.3;q25.3)(chr7:g.1600795::chr17:g.78811678)	yes	unknown	0	0	0	0	43
P-0068291-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	69971870	78820111	IGR: 46Kb before LOC102723505(-)	Intron of RPTOR(+):161bp before exon 11		GRCh37	DELETION	10	13	RPTOR-intragenic	PRECISE	3to5	RPTOR (NM_020761) rearrangement: c.1213-162:RPTOR_chr17:g.69971870del	yes	unknown	8848241	75978	76953	0	13
P-0009434-T01-IM5	SOMATIC	RPTOR		17	15	78831704	53194795	Intron of RPTOR(+): 4bp after exon 13	IGR: 145Kb before ONECUT1(-)		GRCh37	TRANSLOCATION			RPTOR-intragenic	PRECISE	3to3	RPTOR (NM_020761) Rearrangement t(15;17)(15q21.3;17q25.3)(15:g.53194795::chr17:g.78831704)			0	0	0	0	11
P-0014506-T01-IM6	SOMATIC	RPTOR		17	17	43042059	78867562	Intron of C1QL1(-): 3Kb after exon 1	Exon 20 of RPTOR(+)		GRCh37	DELETION			RPTOR-intragenic	PRECISE	3to5	RPTOR (NM_020761) rearrangement: chr17:g.43042059_c.2298:RPTORdel			35825503	362036	399987	0	20
P-0066350-T01-IM7	SOMATIC	RPTOR		17	1	78867535	3697477	Exon 20 of RPTOR(+)	3-UTR of LRRC47(-):174bp after coding stop		GRCh37	TRANSLOCATION			RPTOR-intragenic	PRECISE	5to3	RPTOR (NM_020761) rearrangement: t(1;17)(p36.32;q25.3)(chr1:g.3697477::chr17:g.78867535)			0	0	0	0	22
P-0066911-T01-IM7	SOMATIC	RPTOR		X	17	30044108	78727803	IGR: 190Kb before MAGEB2(+)	Intron of RPTOR(+):6bp before exon 6		GRCh37	TRANSLOCATION			RPTOR-intragenic	PRECISE	3to3	RPTOR (NM_020761) rearrangement: t(17;X)(q25.3;p21.2)(chr17:g.78727803::chrX:g.30044108)			0	0	0	0	5
P-0069084-T01-IM7	SOMATIC	RPTOR		17	17	35994852	78936280	Intron of DDX52(-):1Kb before exon 3	Exon 32 of RPTOR(+)		GRCh37	DELETION			RPTOR-intragenic	PRECISE	3to5	RPTOR (NM_020761) rearrangement: c.3712:RPTOR_chr17:g.35994852del			42941428	647592	754922	0	24
P-0014973-T01-IM6	SOMATIC	RRAGC	RRAGC	1	1	39315703	39317954	Intron of RRAGC(-): 2Kb after exon 5	Intron of RRAGC(-): 92bp after exon 4		GRCh37	DELETION	15	12	Deletion of 1 exon: out of frame	PRECISE	3to5	RRAGC (NM_022157) Rearrangement : c.756+92_899+1584del	yes	unknown	2251	2568	1808	0	9
P-0061727-T01-IM7	SOMATIC	RRAGC		1	1	39325153	39343453	Exon 1 of RRAGC(-)	3-UTR of GJA9-MYCBP(-):4Kb after coding stop		GRCh37	DUPLICATION			RRAGC-intragenic	PRECISE	5to3	RRAGC (NM_022157) rearrangement: c.166:RRAGC_chr1:g.39343453dup			18300	917	1089	0	14
P-0037241-T01-IM6	SOMATIC	RRAS	KCNU1	19	8	50138888	36722354	Exon 6 of RRAS(-)	Intron of KCNU1(+):315bp after exon 19		GRCh37	TRANSLOCATION	10	6	Protein Fusion: mid-exon  {RRAS:KCNU1}	PRECISE	5to5	RRAS (NM_006270) - KCNU1 (NM_001031836) rearrangement: t(8;19)(p11.23)(q.13.33)(chr8:g.36722354::chr19:g.50138888)	yes	unknown	0	0	0	0	6
P-0059527-T02-IM7	SOMATIC	RRAS	RRAS	19	19	48281064	50139027	Promoter of SEPW1(+):777bp from tx start	Exon 5 of RRAS(-)		GRCh37	INVERSION	10	6	Protein Fusion: mid-exon  {SEPW1:RRAS}	PRECISE	3to3	RRAS (NM_006270) rearrangement: c.536:RRAS_chr19:g.48281064inv	yes	unknown	1857963	13223	24028	0	6
P-0078716-T03-IM7	SOMATIC	RRAS2	ABCC8	11	11	14320186	17457230	Intron of RRAS2(-):3Kb before exon 2	Intron of ABCC8(-):3Kb before exon 11		GRCh37	DUPLICATION	0	27	Protein Fusion: out of frame  {RRAS2:ABCC8}	IMPPRECISE	5to3	RRAS2 (NM_012250) - ABCC8 (NM_000352) rearrangement: c.109-2785:RRAS2_c.1631-3439:ABCC8dup	yes	unknown	3137044	9874	11087	0	29
P-0057601-T01-IM6	SOMATIC	RSPO3	TNFAIP3	6	6	127448640	138199647	Intron of RSPO3(+):8Kb after exon 1	Exon 7 of TNFAIP3(+)		GRCh37	DELETION			Protein Fusion: mid-exon  {RSPO3:TNFAIP3}	PRECISE	3to5	RSPO3 (NM_032784) - TNFAIP3 (NM_006290) rearrangement: c.97+8206:RSPO3_c.1065:TNFAIP3del			10751007	37216	58682	0	545
P-0020766-T01-IM6	SOMATIC	RTEL	rearrangement	20	5	62322308	18137294	Intron of RTEL1(+):8bp after exon 27	IGR: 758Kb before LOC401177(-)		GRCh37	TRANSLOCATION			RTEL- rearrangement Fusion	PRECISE	3to5	RTEL (NM_032957) - rearrangement: t(5,20)(p14.3,q13.33)(chr5:g.18137294::chr20:g.62322308)			0	0	0	0	349
P-0018660-T01-IM6	SOMATIC	RTEL1	ARFRP1	20	20	62325750	62333207	Exon 31 of RTEL1(+)	Exon 5 of ARFRP1(-)		GRCh37	DELETION	10	12	Antisense Fusion	PRECISE	3to5	RTEL1 (NM_032957) Rearrangement : c.3090:RTEL1_c.392:ARFRP1del	yes	unknown	7457	10814	15411	0	12
P-0052564-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62321977	62324733	Intron of RTEL1(+):180bp before exon 27	Intron of RTEL1(+):97bp after exon 30		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	RTEL1 (NM_032957) rearrangement: c.2486-181_c.3064+97inv	yes	unknown	2756	10125	16997	0	11
P-0076697-T02-IM7	SOMATIC	RTEL1	ASH1L	20	1	62319130	155393028	Intron of RTEL1(+):7bp after exon 17	Intron of ASH1L(-):7Kb before exon 6		GRCh37	TRANSLOCATION	10	16	Antisense Fusion	PRECISE	3to5	RTEL1 (NM_032957) rearrangement: t(1;20)(q22;q13.33)(chr1:g.155393028::chr20:g.62319130)	yes	unknown	0	0	0	0	16
P-0036312-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62309648	62322691	Exon 12 of RTEL1(+)	Intron of RTEL1(+):391bp after exon 27		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	RTEL1 (NM_032957) Rearrangement  : c.986:_c.2628+391del	yes	unknown	13043	29122	47664	0	30
P-0058481-T01-IM7	SOMATIC	RTEL1		20	20	62312567	62317014	Intron of RTEL1(+):495bp after exon 14	Intron of RTEL1(+):64bp after exon 15		GRCh37	DUPLICATION			Duplication of 1 exon : in frame	PRECISE	5to3	RTEL1 (NM_032957) rearrangement: c.1263+495_c.1338+64dup			4447	1706	4172	0	23
P-0019667-T02-IM6	SOMATIC	RTEL1	RTEL1	20	20	62311122	62316778	Intron of RTEL1(+):79bp before exon 13	Intron of RTEL1(+):97bp before exon 15		GRCh37	DUPLICATION	10	65	Duplication of 2 exons : out of frame	PRECISE	5to3	RTEL1 (NM_032957) rearrangement: c.1110-80_c.1264-98dup	yes	unknown	5656	5945	5494	0	65
P-0044707-T03-IM6	SOMATIC	RTEL1	CDH4	20	20	60150175	62305671	Intron of CDH4(+):76Kb after exon 1	Intron of RTEL1(+):225bp after exon 10		GRCh37	DUPLICATION	10	27	Protein Fusion: in frame  {RTEL1:CDH4}	PRECISE	5to3	RTEL1 (NM_032957) - CDH4 (NM_001794) rearrangement: c.991+225:RTEL1_c.170-168444:CDH4dup	yes	unknown	2155496	16058	50684	0	28
P-0041523-T01-IM6	SOMATIC	RTEL1	CPQ	20	8	62292750	98069745	Exon 3 of RTEL1(+)	Intron of CPQ(+):8Kb before exon 7		GRCh37	TRANSLOCATION	10	175	Protein Fusion: mid-exon  {RTEL1:CPQ}	PRECISE	3to5	RTEL1 (NM_032957) - CPQ (NM_016134.3) rearrangement: t(8;20)(q22.1;q13.33)(chr8:g.98069745::chr20:g.62292750)	yes	unknown	0	0	0	0	183
P-0035723-T01-IM6	SOMATIC	RTEL1	YBX2	20	17	62292480	7193375	Intron of RTEL1(+):170bp before exon 3	Exon 6 of YBX2(-)		GRCh37	TRANSLOCATION	10	8	Protein Fusion: mid-exon  {YBX2:RTEL1}	PRECISE	5to5	YBX2 (NM_015982) - RTEL1 (NM_032957) rearrangement: t(17;20)(p13.1;q13.33)(chr17:g.7193375::chr20:g.62292480)	yes	unknown	0	0	0	0	7
P-0057597-T01-IM6	SOMATIC	RTEL1	PKP2	20	12	62309782	33044173	Intron of RTEL1(+):83bp after exon 12	Intron of PKP2(-):5Kb after exon 1		GRCh37	TRANSLOCATION	10	47	Protein Fusion: out of frame  {RTEL1:PKP2}	PRECISE	3to3	RTEL1 (NM_032957) - PKP2 (NM_001005242) rearrangement: t(12;20)(p11.21;q13.33)(chr12:g.33044173::chr20:g.62309782)	yes	unknown	0	0	0	0	44
P-0031031-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	57400991	62326046	3-UTR of GNAS-AS1(-):25Kb after coding stop	Intron of RTEL1(+):47bp before exon 32		GRCh37	DELETION	10	15	RTEL1-intragenic	PRECISE	3to5	RTEL1 (NM_032957) Rearrangement: c.3182-48:RTEL1_chr20:g.57400991del	yes	unknown	4925055	67209	103127	0	15
P-0045468-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	22755561	62303851	IGR: 187Kb before LINC01384(-)	Intron of RTEL1(+):57bp before exon 9		GRCh37	INVERSION	10	31	RTEL1-intragenic	PRECISE	5to5	RTEL1 (NM_032957) rearrangement: c.772-58:RTEL1_chr20:g.22755561inv	yes	unknown	39548290	272794	277099	0	37
P-0057963-T01-IM6	SOMATIC	RTEL1	CDC14C	20	7	62325729	49273178	Exon 31 of RTEL1(+)	IGR: 309Kb before CDC14C(+)		GRCh37	TRANSLOCATION	10	72	RTEL1-intragenic	PRECISE	5to3	RTEL1 (NM_032957) rearrangement: t(7;20)(p12.2;q13.33)(chr7:g.49273178::chr20:g.62325729)	yes	unknown	0	0	0	0	73
P-0044747-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	61187778	62293272	IGR: 26Kb before MIR133A2(+)	Exon 4 of RTEL1(+)		GRCh37	INVERSION	5	3	RTEL1-intragenic	PRECISE	5to5	RTEL1 (NM_032957) rearrangement: c.371:RTEL1_chr20:g.61187778inv	yes	unknown	1105494	4145	6619	0	3
P-0076495-T01-IM7	SOMATIC	RTEL1	RTEL1	20	20	23029382	62292992	Exon 1 of THBD(-)	Intron of RTEL1(+):143bp after exon 3		GRCh37	DELETION	9	7	RTEL1-intragenic	PRECISE	3to5	RTEL1 (NM_032957) rearrangement: c.301+143:RTEL1_chr20:g.23029382del	yes	unknown	39263610	363747	895687	0	7
P-0025187-T01-IM6	SOMATIC	RTEL1		20	8	62323185	36806047	Exon 28 of RTEL1(+)	IGR: 164Kb before KCNU1(+)		GRCh37	TRANSLOCATION			RTEL1-intragenic	PRECISE	3to3	RTEL1 (NM_032957) rearrangement: t(8;20)(p11.23;q13.33)(chr8:g.36806047::chr20:g.62323185)			0	0	0	0	108
P-0034920-T01-IM6	SOMATIC	RTEL1		20	20	52416941	62324107	IGR: 74Kb before SUMO1P1(-)	Intron of RTEL1(+):50bp before exon 29		GRCh37	DELETION			RTEL1-intragenic	PRECISE	3to5	RTEL1 (NM_032957) rearrangement: c.2725-51:RTEL1_chr20:g.52416941del			9907166	77191	136277	0	40
P-0036368-T01-IM6	SOMATIC	RTEL1		20	20	48618565	62319781	IGR: 19Kb before SNAI1(+)	Intron of RTEL1(+):42bp after exon 20		GRCh37	INVERSION			RTEL1-intragenic	PRECISE	5to5	RTEL1 (NM_032957) rearrangement: c.1794+42:RTEL1_chr20:g.48618565inv			13701216	73786	141898	0	11
P-0040834-T01-IM6	SOMATIC	RUNX1	GRIK2	21	6	36259248	102047418	Exon 4 of RUNX1(-)	Intron of GRIK2(+):22Kb before exon 2		GRCh37	TRANSLOCATION	10	35	Antisense Fusion	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: t(6;21)(q16.3;q22.12)(chr6:g.102047418::chr21:g.36259248)	yes	unknown	0	0	0	0	36
P-0014502-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36194075	36228297	Intron of RUNX1(-): 82bp before exon 5	Intron of RUNX1(-): 3Kb after exon 3		GRCh37	DELETION	13	11	Deletion of 1 exon: in frame	PRECISE	3to5	RUNX1 (NM_001754) rearrangement: c.613+3474_c.805+12632del	yes	unknown	34222	4349	4435	0	11
P-0048992-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36175602	36206904	Intron of RUNX1(-):4Kb before exon 8	Intron of RUNX1(-):6bp before exon 7		GRCh37	DUPLICATION	10	18	Duplication of 1 exon : in frame	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.614-6_c.806-3843dup	yes	unknown	31302	4063	11178	0	57
P-0052879-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36206637	36240113	Intron of RUNX1(-):69bp after exon 7	Intron of RUNX1(-):8Kb before exon 6		GRCh37	DUPLICATION	0	5	Duplication of 2 exons : in frame	IMPPRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.509-8238_c.805+70dup	yes	unknown	33476	3245	5195	0	5
P-0075870-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	36199694	36231962	Intron of RUNX1(-):7Kb after exon 7	Intron of RUNX1(-):87bp before exon 6		GRCh37	DUPLICATION	10	41	Duplication of 2 exons : in frame	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.509-87_c.805+7013dup	yes	unknown	32268	5205	10846	0	41
P-0048104-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36251672	36259206	Intron of RUNX1(-):1Kb after exon 5	Exon 4 of RUNX1(-)		GRCh37	DUPLICATION	9	4	Duplication within transcript : mid-exon	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.285_c.508+1182dup	yes	unknown	7534	1785	2656	0	4
P-0079747-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	36252367	36252912	Intron of RUNX1(-):486bp after exon 5	Exon 5 of RUNX1(-)		GRCh37	DUPLICATION	10	8	Duplication within transcript : mid-exon	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.450_c.508+487dup	yes	unknown	545	420	762	0	8
P-0004893-T01-IM5	SOMATIC	RUNX1	RUNX1	21	21	36237272	36253000	Intron of RUNX1(-): 5Kb before exon 3	Exon 2 of RUNX1(-)		GRCh37	DUPLICATION	58	57	Duplication within transcript: mid-exon	PRECISE	5to3	RUNX1(NM_001754) rearrangement: c.362_c.509-5397dup.	yes	unknown	15728	2155	2832	0	57
P-0072091-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	18818416	36259341	5-UTR of LINC01549(+):3Kb before coding start	Exon 4 of RUNX1(-)		GRCh37	INVERSION	10	55	Protein Fusion: mid-exon  {LINC01549:RUNX1}	PRECISE	3to3	RUNX1 (NM_001754) rearrangement: c.150:RUNX1_chr21:g.18818416inv	yes	unknown	17440925	83272	94029	0	58
P-0019933-T01-IM6	SOMATIC	RUNX1	LINC02743	21	11	36259357	133681309	Exon 4 of RUNX1(-)	Promoter of LOC646522(-):28Kb from tx start		GRCh37	TRANSLOCATION	10	41	Protein Fusion: mid-exon  {RUNX1:LOC646522}	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: t(11;21)(q25;q22.12)(chr11:g.133681309::chr21:g.36259357)	yes	unknown	0	0	0	0	42
P-0043825-T01-IM6	SOMATIC	RUNX1	TBX3	21	12	36191404	115118933	Intron of RUNX1(-):15Kb after exon 7	Exon 2 of TBX3(-)		GRCh37	TRANSLOCATION	10	40	Protein Fusion: mid-exon  {RUNX1:TBX3}	PRECISE	5to3	RUNX1 (NM_001754) - TBX3 (NM_016569) rearrangement: t(12;21)(q24.21;q22.12)(chr12:g.115118933::chr21:g.36191404)	yes	unknown	0	0	0	0	42
P-0038501-T01-IM6	SOMATIC	RUNX1	LIMCH1	21	4	36164904	41311832	Exon 9 of RUNX1(-)	IGR: 50Kb before LIMCH1(+)		GRCh37	TRANSLOCATION	10	8	RUNX1-intragenic	PRECISE	5to5	RUNX1 (NM_001754) rearrangement: t(4;21)(p13;q22.12)(chr4:g.41311832::chr21:g.36164904)	yes	unknown	0	0	0	0	7
P-0040834-T01-IM6	SOMATIC	RUNX1	DYRK1A	21	21	36265254	38804697	Exon 3 of RUNX1(-)	Intron of DYRK1A(+):12Kb after exon 1		GRCh37	DELETION	10	37	RUNX1-intragenic	PRECISE	3to5	RUNX1 (NM_001754) rearrangement: c.65:RUNX1_chr21:g.38804697del	yes	unknown	2539443	3679	5372	0	37
P-0077793-T01-IM7	SOMATIC	RUNX1	RUNX1-IT1	21	21	36171732	36573356	Exon 8 of RUNX1(-)	IGR: 163Kb before RUNX1-IT1(-)		GRCh37	INVERSION	10	92	RUNX1-intragenic	PRECISE	3to3	RUNX1 (NM_001754) rearrangement: c.833:RUNX1_chr21:g.36573356inv	yes	unknown	401624	9976	21127	0	89
P-0030449-T01-IM6	SOMATIC	RUNX1		X	21	46136512	36206846	IGR: 49Kb before LINC01186(-)	Exon 7 of RUNX1(-)		GRCh37	TRANSLOCATION			RUNX1-intragenic	PRECISE	3to5	RUNX1 (NM_001754) rearrangement: t(21;X)(q22.12;p11.3)(chr21:g.36206846::chrX:g.46136512)			0	0	0	0	13
P-0033845-T01-IM6	SOMATIC	RUNX1		21	21	36253106	38829898	Intron of RUNX1(-):96bp before exon 5	Intron of DYRK1A(+):15Kb before exon 2		GRCh37	DELETION			RUNX1-intragenic	PRECISE	3to5	RUNX1 (NM_001754) rearrangement: c.352-96:RUNX1_chr21:g.38829898del			2576792	5610	8049	0	16
P-0048170-T01-IM6	SOMATIC	RUNX1		21	21	20859351	36171911	IGR: 926Kb before LOC101927797(-)	Intron of RUNX1(-):152bp before exon 8		GRCh37	INVERSION			RUNX1-intragenic	IMPPRECISE	3to3	RUNX1 (NM_001754) rearrangement: c.806-152:RUNX1_chr21:g.20859351inv			15312560	11530	13405	0	5
P-0055716-T01-IM6	SOMATIC	RUNX1		21	21	35760606	36259283	3-UTR of SMIM11(+):9Kb after coding stop	Exon 4 of RUNX1(-)		GRCh37	DUPLICATION			RUNX1-intragenic	PRECISE	5to3	RUNX1 (NM_001754) rearrangement: c.208:RUNX1_chr21:g.35760606dup			498677	15596	27684	0	45
P-0086381-T01-IM7	SOMATIC	RUNX1		21	3	36171497	193803831	Intron of RUNX1(-):100bp after exon 8	IGR: 50Kb before HES1(+)		GRCh37	TRANSLOCATION			RUNX1-intragenic	IMPPRECISE	5to5	RUNX1 (NM_001754) rearrangement: t(3;21)(q29;q22.12)(chr3:g.193803831::chr21:g.36171497)			0	0	0	0	87
P-0015129-T01-IM6	SOMATIC	RXRA	RXRA	9	9	137324830	137326085	Intron of RXRA(+): 988bp after exon 8	Intron of RXRA(+): 32bp after exon 9		GRCh37	INVERSION	4	5	Antisense fusion	PRECISE	3to3	RXRA (NM_002957) rearrangement : c.1135+988_c.1241+32inv	yes	unknown	1255	2734	2015	0	4
P-0050730-T01-IM6	SOMATIC	RXRA	RXRA	9	9	137272401	137300770	Intron of RXRA(+):21Kb before exon 2	Intron of RXRA(+):15bp before exon 4		GRCh37	DELETION	7	7	Deletion of 2 exons : in frame	PRECISE	3to5	RXRA (NM_002957) rearrangement: c.29-21077_c.431-16del	yes	unknown	28369	5105	4338	0	7
P-0048245-T01-IM6	SOMATIC	RXRA	RXRA	9	9	93395613	137325998	5-UTR of DIRAS2(-):20Kb before coding start	Exon 9 of RXRA(+)		GRCh37	INVERSION	0	7	Protein Fusion: mid-exon  {DIRAS2:RXRA}	IMPPRECISE	5to5	RXRA (NM_002957) rearrangement: c.1186:RXRA_chr9:g.93395613inv	yes	unknown	43930385	237664	301879	0	13
P-0006767-T02-IM6	SOMATIC	RXRA	UBAP2L	9	1	137308782	154242365	Intron of RXRA(+):221bp before exon 5	Intron of UBAP2L(+):310bp before exon 27		GRCh37	TRANSLOCATION	10	12	Protein Fusion: out of frame  {UBAP2L:RXRA}	PRECISE	5to3	UBAP2L (NM_014847) - RXRA (NM_002957) rearrangement: t(1;9)(q21.3;q34.2)(chr1:g.154242365::chr9:g.137308782)	yes	unknown	0	0	0	0	12
P-0057760-T01-IM6	SOMATIC	RYBP	SHQ1	3	3	72427728	72623084	Exon 4 of RYBP(-)	IGR: 175Kb before SHQ1(-)		GRCh37	DELETION	10	103	RYBP-intragenic	PRECISE	3to5	RYBP (NM_012234) rearrangement: c.465:RYBP_chr3:g.72623084del	yes	unknown	195356	6514	5038	0	106
P-0063900-T01-IM7	SOMATIC	RYBP	BDH1	3	3	72455985	197197972	Intron of RYBP(-):27Kb before exon 2	IGR: 39Kb before BDH1(-)		GRCh37	DELETION	7	3	RYBP-intragenic	PRECISE	3to5	RYBP (NM_012234) rearrangement: c.129-27407:RYBP_chr3:g.197197972del	yes	unknown	124741987	583519	726595	0	3
P-0033465-T01-IM6	SOMATIC	RYBP		3	1	72455938	168626981	Intron of RYBP(-):27Kb before exon 2	IGR: 38Kb before DPT(-)		GRCh37	TRANSLOCATION			RYBP-intragenic	PRECISE	5to5	RYBP (NM_012234) rearrangemnet: t(1;3)(q24.2;p13)(chr1:g.168626981::chr3:g.72455938)			0	0	0	0	110
P-0044843-T01-IM6	SOMATIC	RYBP		3	3	72025951	72495717	IGR: 59Kb before LINC00877(-)	Exon 1 of RYBP(-)		GRCh37	DELETION			RYBP-intragenic	PRECISE	3to5	RYBP (NM_012234) rearrangement: c.58:RYBP_chr3:g.72025951del			469766	7761	6282	0	33
P-0004133-T01-IM5	SOMATIC	SBNO2	JAK3	19	19	1109693	17955035	Exon 27 of SBNO2(-)	Intron of JAK3(-): 8bp after exon 2		GRCh37	DELETION	36	24	Protein fusion: mid-exon (JAK3-SBNO2)	PRECISE	3to5	JAK3 (NM_000215) -SBNO2 (NM_014963) Rearrangement :  c.184+8:JAK3_c.3112:SBNO2del	yes	unknown	16845342	746214	660414	0	25
P-0007518-T01-IM5	SOMATIC	SBNO2	STK11	19	19	1108469	1219265	Exon 32 of SBNO2(-)	Intron of STK11(+): 58bp before exon 3		GRCh37	INVERSION	49	18	Protein fusion: mid-exon (SBNO2-STK11)	PRECISE	5to5	SBNO2 (NM_014963) - STK11 (NM_000455)  Rearrangement  : c.3851:SBNO2_c.375-58:STK11inv	yes	unknown	110796	4294	4835	0	18
P-0014976-T01-IM6	SOMATIC	SCAF11	ARID2	12	12	46298094	46347258	Intron of ARID2(+): 623bp before exon 21	Intron of SFRS2IP(-): 2Kb before exon 4		GRCh37	INVERSION			Protein fusion: out of frame (SFRS2IP-ARID2)	PRECISE	5to5	SCAF11 (NM_004719) - ARID2 (NM_152641) Rearrangement : c.220-1748:SCAF11_c.5364-623:ARID2inv			49164	1405	2164	0	18
P-0079769-T01-IM7	SOMATIC	SCG5	GREM1	15	15	32942014	32994760	Intron of SCG5(+):6Kb after exon 2	IGR: 15Kb before GREM1(+)		GRCh37	DELETION	10	14	SCG5-intragenic	PRECISE	3to5	SCG5 (NM_001144757) rearrangement: c.226+5995:SCG5_chr15:g.32994760del	yes	unknown	52746	7095	5627	1	13
P-0059773-T01-IM7	SOMATIC	SCN4A	CD79B	17	17	62006833	62043886	Exon 5 of CD79B(-)	Exon 7 of SCN4A(-)		GRCh37	DELETION	10	30	Protein Fusion: mid-exon  {SCN4A:CD79B}	PRECISE	3to5	SCN4A (NM_000334) - CD79B (NM_001039933) rearrangement: c.1055:SCN4A_c.555:CD79Bdel	yes	unknown	37053	6828	4937	0	30
P-0022284-T01-IM6	SOMATIC	SCNN1B	PALB2	16	16	23378821	23625246	Intron of SCNN1B(+):355bp before exon 5	Intron of PALB2(-):78bp after exon 11		GRCh37	DELETION	10	82	Antisense Fusion	PRECISE	3to5	PALB2 (NM_024675) - SCNN1B (NM_000336) rearrangement: c.3201+79:PALB2_c.777-356:SCNN1Bdel	yes	unknown	246425	3861	6604	0	83
P-0044467-T01-IM6	SOMATIC	SCP2	NTRK1	1	1	53495722	156844773	Intron of SCP2(+):2Kb after exon 12	Exon 11 of NTRK1(+)		GRCh37	DELETION	10	107	Protein Fusion: mid-exon  {SCP2:NTRK1}	PRECISE	3to5	SCP2 (NM_002979) - NTRK1 (NM_002529) fusion: c.1338+1979:SCP2_c.1327:NTRK1del	yes	unknown	103349051	289989	510066	0	613
P-0044467-T01-IM6	SOMATIC	SCP2	NTRK1								GRCh37				SCP2-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SCP2-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes SCP2 Exon13 (NM_002979) and NTRK1 Exon11 (NM_002529). Note: A 136bp intronic sequence from SCP2 intro13 was included in the detected SCP2-NTRK1 transcript	yes	unknown					
P-0022578-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962266	117652158	Intron of SDC4(-):557bp before exon 3	Intron of ROS1(-):2Kb before exon 32		GRCh37	TRANSLOCATION	10	7	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117652158::chr20:g.43962266)	yes	unknown	0	0	0	0	9
P-0016504-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43961904	117650681	Intron of SDC4(-):195bp before exon 3	Intron of ROS1(-):72bp before exon 32		GRCh37	TRANSLOCATION	10	79	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117650681::chr20:g.43961904)	yes	unknown	0	0	0	0	84
P-0017325-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43963860	117654375	Intron of SDC4(-):561bp after exon 2	Intron of ROS1(-):4Kb before exon 32		GRCh37	TRANSLOCATION	10	10	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117654375::chr20:g.43963860)	yes	unknown	0	0	0	0	9
P-0027630-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962429	117651891	Intron of SDC4(-):720bp before exon 3	Intron of ROS1(-):1Kb before exon 32		GRCh37	TRANSLOCATION	10	16	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117651891::chr20:g.43962429)	yes	unknown	0	0	0	0	36
P-0038394-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43961742	117654360	Intron of SDC4(-):33bp before exon 3	Intron of ROS1(-):4Kb before exon 32		GRCh37	TRANSLOCATION	8	9	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) rearrangement: t(6;20)(q22.1;q13.12)(chr6:g.117654360::chr20:g.43961742)	yes	unknown	0	0	0	0	9
P-0043938-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962372	117651208	Intron of SDC4(-):663bp before exon 3	Intron of ROS1(-):599bp before exon 32		GRCh37	TRANSLOCATION	10	8	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117651208::chr20:g.43962372)	yes	unknown	0	0	0	0	17
P-0042285-T05-IM7	SOMATIC	SDC4	ROS1	20	6	43963020	117650740	Intron of SDC4(-):1Kb before exon 3	Intron of ROS1(-):131bp before exon 32		GRCh37	TRANSLOCATION	10	138	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117650740::chr20:g.43963020)	yes	unknown	0	0	0	0	143
P-0064541-T01-IM7	SOMATIC	SDC4	ROS1	20	6	43962537	117650669	Intron of SDC4(-):828bp before exon 3	Intron of ROS1(-):60bp before exon 32		GRCh37	TRANSLOCATION	10	126	Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117650669::chr20:g.43962537)	yes	unknown	0	0	0	0	128
P-0084802-T02-IM7	SOMATIC	SDC4	ROS1	20	6	43963222	117650706	Intron of SDC4(-):1Kb after exon 2	Intron of ROS1(-):97bp before exon 32		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117650706::chr20:g.43963222)			0	0	0	0	24
P-0001840-T01-IM3	SOMATIC	SDC4	ROS1	20	6	43962892	117650688	Intron of SDC4(-): 1Kb before exon 3	Intron of ROS1(-): 79bp before exon 32		GRCh37	TRANSLOCATION	54	54	Protein fusion: in frame (SDC4-ROS1)	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) Translocation :  t(20;6)(q13.12;q22.1)(chr20:43962892::chr6:117650688)	yes	unknown	0	0	0	0	0
P-0004946-T02-IM5	SOMATIC	SDC4	ROS1	20	6	43962011	117651013	Intron of SDC4(-): 302bp before exon 3	Intron of ROS1(-): 404bp before exon 32		GRCh37	TRANSLOCATION	8	27	Protein fusion: in frame (SDC4-ROS1)	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117651013::chr20:g.43962011)	yes	unknown	0	0	0	0	18
P-0004414-T01-IM5	SOMATIC	SDC4	ROS1	20	6	43957039	117651952	Intron of SDC4(-): 984bp before exon 5	Intron of ROS1(-): 1Kb before exon 32		GRCh37	TRANSLOCATION	0	8	Protein fusion: in frame (SDC4-ROS1)	IMPRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-4 fused with ROS1 exons 32-43): t(6;20) (q22.1; q13.12)(chr6:g.117651952::chr20:g.43957039)	yes	unknown	0	0	0	0	8
P-0012008-T01-IM5	SOMATIC	SDC4	ROS1	20	6	43964016	117652119	Intron of SDC4(-): 406bp after exon 2	Intron of ROS1(-): 2Kb before exon 32		GRCh37	TRANSLOCATION	6	16	Protein fusion: in frame (SDC4-ROS1)	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) reciprocal fusion (SDC4 exons 1-2 with ROS1 exons 32-43): t(6;20) (q22.1; q13.12) (chr6:g.117652119::chr20:g.43964016 )	yes	unknown	0	0	0	0	12
P-0054419-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43955928	117645734	Exon 5 of SDC4(-)	Intron of ROS1(-):156bp before exon 34		GRCh37	TRANSLOCATION	10	61	Protein Fusion: mid-exon  {SDC4:ROS1}	PRECISE	5to3	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117645734::chr20:g.43955928)	yes	unknown	0	0	0	0	60
P-0022765-T01-IM6	SOMATIC	SDC4	NRG1								GRCh37				SDC4-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SDC4-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes SDC4 Exon2 (NM_002999) and NRG1 Exon6  (NM_004495).	yes	unknown					
P-0027375-T02-IM7	SOMATIC	SDC4	NRG1								GRCh37				SDC4-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SDC4-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes SDC4 Exon4 (NM_002999) and NRG1 Exon6 (NM_004495).	yes	unknown					
P-0058768-T01-IM7	SOMATIC	SDC4	ROS1								GRCh37				SDC4-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SDC4-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SDC4 Exon5 (NM_002999) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0010504-T01-IM5	SOMATIC	SDCCAG8	AKT3	1	1	243661258	243663054	Intron of SDCCAG8(+): 2Kb before exon 18	Exon 13 of AKT3(-)		GRCh37	DELETION	17	11	Antisense fusion	PRECISE	3to5	AKT3 (NM_181690) rearrangement: c.1389_*6+1781del	yes	unknown	1796	686	670	0	10
P-0065337-T02-IM7	SOMATIC	SDHA	SLC9A3	5	5	218632	497530	Intron of SDHA(+):99bp after exon 1	Intron of SLC9A3(-):5Kb before exon 2		GRCh37	DELETION	10	13	Antisense Fusion	PRECISE	3to5	SDHA (NM_004168) rearrangement: c.63+99:SDHA_chr5:g.497530del	yes	unknown	278898	25392	45606	0	18
P-0061760-T01-IM7	SOMATIC	SDHA	PLEKHG4B	5	5	159010	256437	Intron of PLEKHG4B(+):2Kb after exon 9	Intron of SDHA(+):11bp before exon 15		GRCh37	DUPLICATION	10	10	Protein Fusion: in frame  {SDHA:PLEKHG4B}	PRECISE	5to3	SDHA (NM_004168) - PLEKHG4B (NM_052909) rearrangement: c.1909-12:SDHA_c.1419+1984:PLEKHG4Bdup	yes	unknown	97427	24823	31189	0	14
P-0070542-T02-IM7	SOMATIC	SDHA	AHRR	5	5	231037	313784	Exon 7 of SDHA(+)	Intron of AHRR(+):9Kb after exon 1		GRCh37	DELETION	9	4	Protein Fusion: mid-exon  {SDHA:AHRR}	PRECISE	3to5	SDHA (NM_004168) - AHRR (NM_001242412) rearrangement: c.817:SDHA_c.2+9448:AHRRdel	yes	unknown	82747	15619	27025	0	4
P-0082319-T01-IM7	SOMATIC	SDHA		5	5	256428	445554	Intron of SDHA(+):20bp before exon 15	5-UTR of EXOC3(+):766bp before coding start		GRCh37	INVERSION			SDHA-intragenic	PRECISE	5to5	SDHA (NM_004168) rearrangement: c.1909-21:SDHA_chr5:g.445554inv			189126	2704	5048	0	17
P-0079920-T02-IM7	SOMATIC	SDHAF2		11	11	47885541	61200990	IGR: 86Kb before NUP160(-)	Intron of SDHAF2(+):3Kb after exon 1		GRCh37	DELETION			SDHAF2-intragenic	PRECISE	3to5	SDHAF2 (NM_017841) rearrangement: c.36+3336:SDHAF2_chr11:g.47885541del			13315449	59955	48419	0	18
P-0014952-T01-IM6	SOMATIC	SDHB		1	1	17371455	18019595	Intron of SDHB(-): 72bp before exon 2	Intron of ARHGEF10L(+): 2Kb before exon 28		GRCh37	DELETION			SDHB-intragenic	PRECISE	3to5	SDHB (NM_003000) rearrangement: c.73-72:SDHB_chr1:g.18019595del			648140	2339	1814	0	10
P-0074150-T01-IM7	SOMATIC	SDHB	SDHB	1	1	9939692	17349077	5-UTR of CTNNBIP1(-):29Kb before coding start	Intron of SDHB(-):25bp after exon 7		GRCh37	DELETION	10	10	Transcript Fusion {SDHB:CTNNBIP1}	PRECISE	3to5	SDHB (NM_003000) rearrangement: c.765+26:SDHB_chr1:g.9939692del	yes	unknown	7409385	150463	93886	0	11
P-0064661-T01-IM7	SOMATIC	SDHC		1	1	161298186	245005286	Exon 3 of SDHC(+)	Exon 2 of COX20(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {COX20:SDHC}	IMPPRECISE	5to3	SDHC (NM_003001) rearrangement: c.78:SDHC_chr1:g.245005286dup			83707100	408325	588693	0	6
P-0040730-T02-IM6	SOMATIC	SDHD	SDHD	21	11	34852395	111957758	Promoter of TMEM50B(-):31Kb from tx start	Intron of SDHD(+):75bp after exon 1		GRCh37	TRANSLOCATION	10	13	Antisense Fusion	PRECISE	5to3	SDHD (NM_003002) rearrangement: t(11;21)(q23.1;q22.11)(chr11:g.111957758::chr21:g.34852395)	yes	unknown	0	0	0	0	13
P-0043184-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139362217	139397404	Intron of SEC16A(-):649bp after exon 5	Intron of NOTCH1(-):229bp after exon 27		GRCh37	DUPLICATION	0	16	Protein Fusion: in frame  {SEC16A:NOTCH1}	IMPPRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3802+650:SEC16A_c.5167+230:NOTCH1dup	yes	unknown	35187	28745	44831	0	17
P-0016246-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377707	139390620	5-UTR of SEC16A(-):42Kb before coding start	Exon 34 of NOTCH1(-)		GRCh37	DELETION	10	61	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	PRECISE	3to5	NOTCH1 (NM_017617)- SEC16A (NM_014866) Rearrangement : c.7571:NOTCH1_c.-509:SEC16Adel	yes	unknown	12913	819	312	0	66
P-0031726-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139342217	139396839	Intron of SEC16A(-):85bp before exon 26	Exon 28 of NOTCH1(-)		GRCh37	DUPLICATION	10	33	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	PRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) Rearrangement: c.6448-85:SEC16A_c.5269:NOTCH1dup	yes	unknown	54622	32044	26905	0	33
P-0034268-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139347276	139403372	Intron of SEC16A(-):603bp after exon 22	Exon 19 of NOTCH1(-)		GRCh37	DUPLICATION	10	14	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	PRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.6159+604:SEC16A_c.3121:NOTCH1dup	yes	unknown	56096	40004	53204	0	15
P-0052383-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139354634	139397029	Intron of SEC16A(-):59bp before exon 14	Intron of NOTCH1(-):89bp before exon 28		GRCh37	DUPLICATION			Protein Fusion: out of frame  {SEC16A:NOTCH1}	PRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.4992-59:SEC16A_c.5168-89:NOTCH1dup			42395	34672	81334	0	26
P-0052383-T01-IM6	SOMATIC	SEC16A	NOTCH1								GRCh37				SEC16A-NOTCH1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SEC16A-NOTCH1 fusion. Note: The rearrangement is an in-frame fusion between genes SEC16A Exon13 (NM_014866) and NOTCH1 Exon29 (NM_017617.3).	yes	unknown					
P-0017011-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377731	139397456	5-UTR of SEC16A(-):42Kb before coding start	Intron of NOTCH1(-):177bp after exon 27		GRCh37	DUPLICATION	10	11	Transcript Fusion {SEC16A:NOTCH1}	PRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) Rearrangement : c.-533:SEC16A_c.5167+178:NOTCH1dup	yes	unknown	19725	19712	29196	0	12
P-0024450-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377385	139397969	5-UTR of SEC16A(-):41Kb before coding start	Intron of NOTCH1(-):187bp before exon 27		GRCh37	DUPLICATION			Transcript Fusion {SEC16A:NOTCH1}	PRECISE	5to3	SEC16A (NM_014866) - NOTCH1 (NM_017617) fusion (SEC16A exon 1 fused to NOTCH1 exons 27-34): c.-192+5:SEC16A_c.5019-187:NOTCH1dup			20584	29672	57623	0	19
P-0019179-T01-IM6	SOMATIC	SEC22B	NOTCH2								GRCh37				SEC22B-NOTCH2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SEC22B-NOTCH2 fusion. Note: The rearrangement is a fusion between genes SEC22B Exon1 (NM_004892) and NOTCH2 Exon27 (NM_024408). The functional significance of this fusion is unclear.	yes	unknown					
P-0048892-T01-IM6	SOMATIC	SEC31A	CDK12	17	4	37682432	83761890	Exon 13 of CDK12(+)	Intron of SEC31A(-):1Kb after exon 20		GRCh37	TRANSLOCATION	0	17	Protein Fusion: mid-exon  {SEC31A:CDK12}	IMPPRECISE	5to5	SEC31A (NM_014933) - CDK12 (NM_016507) rearrangement: t(4;17)(q21.22;q12)(chr4:g.83761890::chr17:g.37682432)	yes	unknown	0	0	0	0	26
P-0074199-T01-IM7	SOMATIC	SEC61A1	RAF1								GRCh37				SEC61A1-RAF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SEC61A1-RAF1 fusion. Note: The rearrangement is an in-frame fusion between genes SEC61A1 Exon8 (NM_013336) and RAF1 Exon8 (NM_002880).	yes	unknown					
P-0030910-T01-IM6	SOMATIC	SEL1L	EGFR	14	7	81986576	55222485	Intron of SEL1L(-):6Kb after exon 3	Intron of EGFR(+):640bp after exon 7		GRCh37	TRANSLOCATION	10	131	Protein Fusion: in frame  {SEL1L:EGFR}	PRECISE	5to5	SEL1L (NM_005065) - EGFR (NM_005228) rearrangement: t(7;14)(p11.2;q31.1)(chr7:g.55222485::chr14:g.81986576)	yes	unknown	0	0	0	0	148
P-0020223-T01-IM6	SOMATIC	SESN1	NDST3	6	4	109323487	119064248	Exon 2 of SESN1(-)	Intron of NDST3(+):462bp before exon 6		GRCh37	TRANSLOCATION	10	41	Protein Fusion: mid-exon  {NDST3:SESN1}	PRECISE	3to3	NDST3 (NM_004784) - SESN1 (NM_014454) rearrangement: t(10;11)(q26;q21)(chr10:g.126280260::chr11:g.17734059)	yes	unknown	0	0	0	0	41
P-0035726-T01-IM6	SOMATIC	SESN1	INPP5D	6	2	109415104	234003013	Exon 1 of SESN1(-)	Intron of INPP5D(+):8Kb after exon 5		GRCh37	TRANSLOCATION	0	6	Protein Fusion: mid-exon  {SESN1:INPP5D}	IMPPRECISE	5to5	SESN1 (NM_014454) - INPP5D (NM_005541) rearrangement: t(2;6)(q37.1;q21)(chr2:g.234003013::chr6:g.109415104)	yes	unknown	0	0	0	0	6
P-0024800-T01-IM6	SOMATIC	SESN1	PPIL6	6	6	109319641	109742685	Intron of SESN1(-):74bp after exon 5	Intron of PPIL6(-):2Kb before exon 6		GRCh37	DUPLICATION	6	5	Protein Fusion: out of frame  {SESN1:PPIL6}	PRECISE	5to3	SESN1 (NM_014454) - PPIL6 (NM_001111298) rearrangement: c.972+75:SESN1_c.632-2239:PPIL6dup	yes	unknown	423044	8685	13836	0	6
P-0075562-T01-IM7	SOMATIC	SESN1	CTGF	6	6	109312173	132247591	Intron of SESN1(-):135bp before exon 8	IGR: 22Kb before CTGF(-)		GRCh37	INVERSION	0	6	SESN1-intragenic	IMPPRECISE	3to3	SESN1 (NM_014454) rearrangement: c.1234-135:SESN1_chr6:g.132247591inv	yes	unknown	22935418	227592	356848	0	6
P-0076888-T01-IM7	SOMATIC	SESN1	SESN1	17	6	49631053	109330420	IGR: 77Kb before CA10(-)	Intron of SESN1(-):7Kb before exon 2		GRCh37	TRANSLOCATION	10	52	SESN1-intragenic	PRECISE	5to5	SESN1 (NM_014454) rearrangement: t(6;17)(q21;q21.33)(chr6:g.109330420::chr17:g.49631053)	yes	unknown	0	0	0	0	55
P-0073056-T01-IM7	SOMATIC	SESN2	RCC1	1	1	28601519	28856844	Exon 8 of SESN2(+)	Intron of RCC1(+):393bp after exon 4		GRCh37	DELETION	10	22	Protein Fusion: mid-exon  {SESN2:RCC1}	PRECISE	3to5	SESN2 (NM_031459) - RCC1 (NM_001048194) rearrangement: c.1204:SESN2_c.74-191:RCC1del	yes	unknown	255325	3092	6256	0	24
P-0070030-T01-IM7	SOMATIC	SESN2	SESN2	1	1	2727141	28601209	IGR: 154Kb before TTC34(-)	Intron of SESN2(+):126bp before exon 8		GRCh37	DELETION	10	23	SESN2-intragenic	PRECISE	3to5	SESN2 (NM_031459) rearrangement: c.1021-127:SESN2_chr1:g.2727141del	yes	unknown	25874068	529372	393783	0	24
P-0035965-T01-IM6	SOMATIC	SESN2		1	1	28600160	95817451	Intron of SESN2(+):141bp after exon 6	IGR: 118Kb before RWDD3(+)		GRCh37	INVERSION			SESN2-intragenic	PRECISE	3to3	SESN2 (NM_031459) rearrangement: c.901+141:SESN2_chr1:g.95817451inv			67217291	312048	293849	0	7
P-0022084-T01-IM6	SOMATIC	SESN3		11	11	94911024	94920278	Exon 8 of SESN3(-)	Intron of SESN3(-):2Kb before exon 5		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	SESN3 (NM_144665) Rearrangement: c.526-1622_c.1106del			9254	7427	4658	0	135
P-0030305-T01-IM6	SOMATIC	SESN3	PDE11A	11	2	94917667	178814762	Exon 6 of SESN3(-)	Intron of PDE11A(-):45Kb before exon 3		GRCh37	TRANSLOCATION	10	6	Protein Fusion: mid-exon  {PDE11A:SESN3}	PRECISE	3to5	PDE11A (NM_016953) - SESN3 (NM_144665) rearrangement: t(2;11)(q31.2;q21)(chr2:g.178814762::chr11:g.94917667)	yes	unknown	0	0	0	0	6
P-0053993-T01-IM6	SOMATIC	SESN3	MMP13	11	11	94926675	102811473	Exon 2 of SESN3(-)	Promoter of MMP13(-):2Kb from tx start		GRCh37	INVERSION	0	15	SESN3-intragenic	IMPPRECISE	3to3	SESN3 (NM_144665) rearrangement: c.90:SESN3_chr11:g.102811473inv	yes	unknown	7884798	61951	45404	0	14
P-0064741-T01-IM7	SOMATIC	SESN3	PDK4	11	7	94908591	95269958	Intron of SESN3(-):70bp after exon 9	IGR: 57Kb before PDK4(-)		GRCh37	TRANSLOCATION	10	31	SESN3-intragenic	PRECISE	5to5	SESN3 (NM_144665) rearrangement: t(7;11)(q21.3;q21)(chr7:g.95269958::chr11:g.94908591)	yes	unknown	0	0	0	0	33
P-0065039-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47042242	47139515	Intron of NBEAL2(+):248bp before exon 28	Exon 9 of SETD2(-)		GRCh37	DELETION	10	29	Antisense Fusion	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.5072:SETD2_chr3:g.47042242del	yes	unknown	97273	26196	26446	0	29
P-0075464-T02-IM7	SOMATIC	SETD2	SETD2	3	3	47147188	47148098	Intron of SETD2(-):298bp after exon 6	Intron of SETD2(-):488bp before exon 6		GRCh37	DELETION	7	28	Deletion of 1 exon : out of frame	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.4716-488_c.4839+299del	yes	unknown	910	1574	1901	0	30
P-0067195-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47161831	47181466	Exon 3 of SETD2(-)	Intron of SETD2(-):13Kb before exon 2		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.72-13313_c.4295del	yes	unknown	19635	21895	17977	0	5
P-0075919-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47125600	47127112	Exon 12 of SETD2(-)	Intron of SETD2(-):572bp after exon 11		GRCh37	DELETION	10	127	Deletion within transcript : mid-exon	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.5397+573_c.5670del	yes	unknown	1512	1103	518	0	132
P-0077405-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47158808	47162670	Intron of SETD2(-):564bp before exon 4	Exon 3 of SETD2(-)		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.3456_c.4455-564del	yes	unknown	3862	6103	6883	0	5
P-0068715-T01-IM7	SOMATIC	SETD2		3	3	47085620	47088031	Intron of SETD2(-):1Kb before exon 17	Exon 16 of SETD2(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	SETD2 (NM_014159) rearrangement: c.7044_c.7099-1430del			2411	468	849	0	6
P-0065575-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47102329	47103932	Intron of SETD2(-):1Kb after exon 14	Intron of SETD2(-):96bp before exon 14		GRCh37	DUPLICATION	10	21	Duplication of 1 exon : out of frame	PRECISE	5to3	SETD2 (NM_014159) rearrangement: c.6110-96_c.6293+1324dup	yes	unknown	1603	1406	1617	0	21
P-0025988-T01-IM6	SOMATIC	SETD2		3	3	47127721	47135727	Exon 11 of SETD2(-)	Intron of SETD2(-):4Kb after exon 9		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	SETD2 (NM_014159): c.5361SETD2_c.5142+3718dup			8006	1965	4400	0	51
P-0070353-T01-IM7	SOMATIC	SETD2	ARIH2	3	3	47088048	49023787	Exon 16 of SETD2(-)	Promoter of ARIH2(+):68Kb from tx start		GRCh37	INVERSION	10	73	Protein Fusion: mid-exon  {SETD2:ARIH2}	PRECISE	5to5	SETD2 (NM_014159) rearrangement: c.7027:SETD2_chr3:g.49023787inv	yes	unknown	1935739	38846	95205	0	86
P-0016886-T01-IM6	SOMATIC	SETD2	GNB4	3	3	47139459	179162435	Exon 9 of SETD2(-)	5-UTR of GNB4(-):43Kb before coding start		GRCh37	DUPLICATION	10	25	Protein Fusion: mid-exon  {SETD2:GNB4}	PRECISE	5to3	SETD2 (NM_014159) - GNB4 (NM_021629) Rearrangement : c.5128:SETD2_c.-43+6699:GNB4dup	yes	unknown	132022976	474245	739780	0	27
P-0052969-T01-IM6	SOMATIC	SETD2	SMARCC1	3	3	47147353	47723401	Intron of SETD2(-):133bp after exon 6	Intron of SMARCC1(-):1Kb before exon 15		GRCh37	DUPLICATION	10	38	Protein Fusion: out of frame  {SETD2:SMARCC1}	PRECISE	5to3	SETD2 (NM_014159) - SMARCC1 (NM_003074) rearrangement: c.4839+134:SETD2_c.1386-1403:SMARCC1dup	yes	unknown	576048	26453	43334	0	39
P-0011183-T01-IM5	SOMATIC	SETD2	MAP4	3	3	47127805	47928372	Intron of SETD2(-): 1bp before exon 11	Intron of MAP4(-): 9Kb before exon 9		GRCh37	DELETION	12	8	Protein fusion: out of frame (MAP4-SETD2)	PRECISE	3to5	MAP4 (NM_002375) - SETD2 (NM_014159) rearrangement: c.2000-9359:MAP4_c.5278-1:SETD2del	yes	unknown	800567	62276	58584	0	8
P-0004455-T01-IM5	SOMATIC	SETD2	SETD2	3	3	47131668	47165098	Intron of SETD2(-): 2Kb before exon 10	Exon 3 of SETD2(-)		GRCh37	INVERSION	17	18	SETD2-intragenic	PRECISE	3to3	SETD2 (NM_014159) rearrangement event : c.1028_5143-1931inv	yes	unknown	33430	37662	42956	0	18
P-0012895-T03-IM6	SOMATIC	SETD2	PTPN23	3	3	47129778	47398715	Intron of SETD2(-):41bp before exon 10	IGR: 24Kb before PTPN23(+)		GRCh37	DELETION	9	7	SETD2-intragenic	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.5143-41:SETD2_chr3:g.47398715del	yes	unknown	268937	16616	21896	0	7
P-0066680-T01-IM7	SOMATIC	SETD2	PDZRN3	3	3	47098326	73407327	Exon 15 of SETD2(-)	IGR: 24Kb before PDZRN3(-)		GRCh37	INVERSION	10	12	SETD2-intragenic	PRECISE	3to3	SETD2 (NM_014159) rearrangement: c.6948:SETD2_chr3:g.73407327inv	yes	unknown	26309001	350813	666732	0	12
P-0073061-T01-IM7	SOMATIC	SETD2	SETD2	6	3	122068247	47164777	IGR: 312Kb before GJA1(+)	Exon 3 of SETD2(-)		GRCh37	TRANSLOCATION	10	32	SETD2-intragenic	PRECISE	5to5	SETD2 (NM_014159) rearrangement: t(3;6)(p21.31;q22.31)(chr3:g.47164777::chr6:g.122068247)	yes	unknown	0	0	0	0	36
P-0013032-T01-IM5	SOMATIC	SETD2		12	3	68312811	47084233	IGR: 236Kb before IFNG(-)	Intron of SETD2(-): 43bp before exon 17		GRCh37	TRANSLOCATION			SETD2-intragenic	PRECISE	3to3	SETD2 (NM_014159) rearrangement: t(3;12)(p21.31;q15)(chr3:g.47084233::chr12:g.68312811)			0	0	0	0	9
P-0021826-T01-IM6	SOMATIC	SETD2		3	3	47155551	47362971	Intron of SETD2(-):57bp before exon 5	Intron of KLHL18(+):1Kb before exon 3		GRCh37	DELETION			SETD2-intragenic	PRECISE	3to5	SETD2 (NM_014159) rearrangement: c.4587-57:SETD2_chr3:g.47362971del			207420	28010	30117	0	17
P-0006603-T01-IM5	SOMATIC	SETD4	TMPRSS2	21	21	37428600	42869417	Intron of SETD4(-): 807bp after exon 3	Intron of TMPRSS2(-): 629bp after exon 2		GRCh37	DUPLICATION	62	78	Protein fusion: out of frame (SETD4-TMPRSS2)	PRECISE	5to3	SETD4 (NM_017438) - TMPRSS2 (NM_001135099) rearrangement: c.169+807:SETD4_c.126+629:TMPRSS2del	yes	unknown	5440817	65666	99122	0	74
P-0028792-T01-IM7	SOMATIC	SETDB1		7	1	89150502	150900228	IGR: 361Kb before STEAP2-AS1(-)	Exon 2 of SETDB1(+)		GRCh37	TRANSLOCATION			SETDB1-intragenic	PRECISE	5to3	SETDB1 (NM_001145415) rearrangement: t(1;7)(q21;q21.13)(chr1:g.150900228::chr7:g.89150502)			0	0	0	0	56
P-0072667-T01-IM7	SOMATIC	SETDB1		1	1	150935105	231143631	Exon 18 of SETDB1(+)	IGR: 11Kb before FAM89A(-)		GRCh37	INVERSION			SETDB1-intragenic	PRECISE	3to3	SETDB1 (NM_001145415) rearrangement: c.3201:SETDB1_chr1:g.231143631inv			80208526	597994	605367	0	23
P-0089121-T01-IM7	SOMATIC	SETDB1		1	1	150936667	159324645	Intron of SETDB1(+):55bp before exon 22	IGR: 41Kb before OR10J3(-)		GRCh37	INVERSION			SETDB1-intragenic	PRECISE	5to5	SETDB1 (NM_001145415) rearrangement: c.3759-56:SETDB1_chr1:g.159324645inv			8387978	139022	119346	0	4
P-0047762-T01-IM6	SOMATIC	SF3B1	PLCL1	2	2	198257830	198794918	Exon 24 of SF3B1(-)	Intron of PLCL1(+):125Kb after exon 1		GRCh37	DUPLICATION	10	4	Antisense Fusion	PRECISE	5to3	SF3B1 (NM_012433) rearrangement: c.3622:SF3B1_chr2:g.198794918dup	yes	unknown	537088	27942	26483	0	4
P-0008709-T01-IM5	SOMATIC	SF3B1	PDE1A	2	2	183386885	198283154	Intron of PDE1A(-): 118bp after exon 1	Intron of SF3B1(-): 79bp after exon 5		GRCh37	DELETION			Protein fusion: out of frame (SF3B1-PDE1A)	PRECISE	3to5	SF3B1 (NM_012433) - PDE1A (NM_005019) rearrangement: c.495+79:SF3B1_c.101+118:PDE1Adel			14896269	102318	106667	0	43
P-0017846-T01-IM6	SOMATIC	SF3B1		2	2	196301398	198283286	IGR: 220Kb before SLC39A10(+)	Exon 5 of SF3B1(-)		GRCh37	INVERSION			SF3B1-intragenic	PRECISE	3to3	SF3B1 (NM_012433) Rearrangement : chr2:g.196301398_c.442:SF3B1inv			1981888	20468	50183	0	13
P-0079778-T01-IM7	SOMATIC	SF3B1	MAP2	2	2	198262598	210490443	Intron of SF3B1(-):110bp after exon 22	5-UTR of MAP2(+):27Kb before coding start		GRCh37	INVERSION	10	20	Transcript Fusion {SF3B1:MAP2}	PRECISE	5to5	SF3B1 (NM_012433) rearrangement: c.3266+111:SF3B1_chr2:g.210490443inv	yes	unknown	12227845	98767	124263	0	19
P-0043823-T01-IM6	SOMATIC	SFTA3	NUF2	14	1	36956644	163309186	Intron of SFTA3(-):4Kb after exon 2	Exon 8 of NUF2(+)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {SFTA3:NUF2}	PRECISE	5to5	SFTA3 (NM_001101341) - NUF2 (NM_031423) rearrangement: t(1;14)(q23.3;q13.3)(chr1:g.163309186::chr14:g.36956644)			0	0	0	0	6
P-0061991-T02-IM7	SOMATIC	SFTPB	CRYZL1	21	2	34977252	85885488	Intron of CRYZL1(-):1Kb before exon 7	3-UTR of SFTPB(-):3Kb after coding stop		GRCh37	TRANSLOCATION	10	76	CRYZL1-SFTPB fusion	PRECISE	3to3	SFTPB (NM_198843) - CRYZL1 (NM_145858) rearrangement: t(2;21)(p11.2;q22.11)(chr2:g.85885488::chr21:g.34977252)	yes	unknown	0	0	0	0	77
P-0077230-T01-IM7	SOMATIC	SFTPB	ALK	2	2	29450633	85895034	Intron of ALK(-):95bp before exon 17	Intron of SFTPB(-):105bp before exon 3		GRCh37	DELETION	10	70	Protein Fusion: in frame  {SFTPB:ALK}	PRECISE	3to5	SFTPB (NM_198843) - ALK (NM_004304) fusion: c.104-105:SFTPB_c.2816-95:ALKdel	yes	unknown	56444401	457625	552902	0	72
P-0069025-T01-IM7	SOMATIC	SFTPB	SFTPB	2	2	85885489	85895120	3-UTR of SFTPB(-):3Kb after coding stop	Intron of SFTPB(-):119bp after exon 2		GRCh37	INVERSION	10	9	SFTPB-intragenic	PRECISE	5to5	SFTPB (NM_198843) rearrangement: c.103+120_c.*509del	yes	unknown	9631	7270	8271	0	13
P-0056782-T01-IM7	SOMATIC	SFTPB		2	2	85885631	85888942	3-UTR of SFTPB(-):3Kb after coding stop	Intron of SFTPB(-):209bp after exon 10		GRCh37	DELETION			SFTPB-intragenic	PRECISE	3to5	SFTPB (NM_198843) rearrangement: c.1083+210_c.*367del			3311	8556	12741	0	81
P-0071548-T03-IM7	SOMATIC	SFTPB		2	2	85883638	85885157	Promoter of SFTPB(-):801bp from tx start	3-UTR of SFTPB(-):3Kb after coding stop		GRCh37	DELETION			SFTPB-intragenic	PRECISE	3to5	SFTPB (NM_000542) rearrangement:			1519	2906	2482	0	16
P-0070133-T02-IM7	SOMATIC	SFXN5	DNMT3A	2	2	25505363	73261476	Exon 4 of DNMT3A(-)	Intron of SFXN5(-):7Kb after exon 3		GRCh37	DELETION	10	13	Protein Fusion: mid-exon  {SFXN5:DNMT3A}	PRECISE	3to5	SFXN5 (NM_144579) - DNMT3A (NM_022552) rearrangement: c.249+6507:SFXN5_c.395:DNMT3Adel	yes	unknown	47756113	400434	538760	0	14
P-0053493-T01-IM6	SOMATIC	SGCG	FLT3	13	13	23835556	28599245	Intron of SGCG(+):11Kb after exon 4	Intron of FLT3(-):165bp before exon 18		GRCh37	INVERSION	10	10	Protein Fusion: out of frame  {SGCG:FLT3}	PRECISE	3to3	SGCG (NM_000231) - FLT3 (NM_004119) rearrangement: c.385+10700:SGCG_c.2208-165:FLT3inv	yes	unknown	4763689	26103	36733	0	10
P-0028897-T01-IM6	SOMATIC	SH2B3	KAZN	12	1	111885908	14987055	Exon 8 of SH2B3(+)	Intron of KAZN(+):61Kb after exon 1		GRCh37	TRANSLOCATION	8	8	Antisense Fusion	PRECISE	3to3	SH2B3 (NM_005475) rearrangement: t(1;12)(p36.21;q24.12)(chr1:g.14987055::chr12:g.111885908)	yes	unknown	0	0	0	0	8
P-0070654-T01-IM7	SOMATIC	SH2B3	ATXN2	12	12	111856757	111912051	Intron of SH2B3(+):76bp after exon 2	Intron of ATXN2(-):4Kb before exon 19		GRCh37	DELETION	10	19	Antisense Fusion	PRECISE	3to5	SH2B3 (NM_005475) rearrangement: c.732+76:SH2B3_chr12:g.111912051del	yes	unknown	55294	7592	10530	0	19
P-0009542-T01-IM5	SOMATIC	SH2B3	TMEM116	12	12	111856489	112379170	Exon 2 of SH2B3(+)	Intron of TMEM116(-): 2Kb after exon 7		GRCh37	INVERSION	0	6	Protein fusion: mid-exon (TMEM116-SH2B3)	IMPRECISE	5to5	TMEM116 (NM_001193531) -SH2B3 (NM_005475) Rearrangement : c.315+1899:TMEM116_ c.540:SH2B3_inv	yes	unknown	522681	30681	30678	0	6
P-0076449-T01-IM7	SOMATIC	SH2B3	RAN	12	12	111856047	131354719	Exon 2 of SH2B3(+)	Promoter of RAN(+):2Kb from tx start		GRCh37	INVERSION	10	19	SH2B3-intragenic	PRECISE	5to5	SH2B3 (NM_005475) rearrangement: c.98:SH2B3_chr12:g.131354719inv	yes	unknown	19498672	155658	191226	0	24
P-0009240-T01-IM5	SOMATIC	SH2D1A	SH2D1A	X	X	123499635	123505840	Exon 2 of SH2D1A(+)	3-UTR of SH2D1A(+): 599bp after coding stop		GRCh37	DUPLICATION	60	32	SH2D1A-intragenic	PRECISE	5to3	SH2D1A (NM_002351) rearrangement: c.162_c.*599dup	yes	unknown	6205	5859	4274	0	30
P-0020624-T01-IM6	SOMATIC	SH2D1A	SH2D1A	X	X	123504214	123506403	Intron of SH2D1A(+):44bp after exon 3	3-UTR of SH2D1A(+):26Kb after coding stop		GRCh37	DELETION	6	2	SH2D1A-intragenic	PRECISE	3to5	SH2D1A (NM_002351) rearrangement: c.346+44_c.*1162del	yes	unknown	2189	1208	494	0	2
P-0024635-T01-IM6	SOMATIC	SH2D1A		X	9	123505266	29112796	3-UTR of SH2D1A(+):25Kb after coding stop	5-UTR of LINGO2(-):1Mb before coding start		GRCh37	TRANSLOCATION			SH2D1A-intragenic	PRECISE	3to3	SH2D1A (NM_002351) rearrangement: t(X;9)(q25;p21.2)(chrX:g.123505266::chr9:g.29112796)			0	0	0	0	34
P-0029843-T01-IM6	SOMATIC	SH3BGR	TMPRSS2	21	21	40845925	42872212	Intron of SH3BGR(+):1Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	15	Protein Fusion: out of frame  {SH3BGR:TMPRSS2}	PRECISE	3to3	SH3BGR (NM_007341) - TMPRSS2 (NM_001135099) rearrangement: c.421-1136:SH3BGR_c.56-2096:TMPRSS2inv	yes	unknown	2026287	39490	21227	0	15
P-0012976-T01-IM5	SOMATIC	SH3PXD2B	PDGFRB	5	5	149510161	171857484	Exon 9 of PDGFRB(-)	Intron of SH3PXD2B(-): 8Kb before exon 2		GRCh37	DELETION			Protein fusion: mid-exon (SH3PXD2B-PDGFRB)	PRECISE	3to5	SH3PXD2B (NM_001017995) - PDGFRB (NM_002609) rearrangement: c.76-7984:SH3PXD2B_c.1308:PDGFRBdel			22347323	57882	73109	0	7
P-0031882-T01-IM6	SOMATIC	SHANK2	INPPL1	11	11	70501515	71942656	Intron of SHANK2(-):4Kb after exon 2	Exon 13 of INPPL1(+)		GRCh37	DUPLICATION	10	42	Antisense Fusion	PRECISE	5to3	INPPL1 (NM_001567) rearrangement: c.1612:INPPL1_chr11:g.70501515dup	yes	unknown	1441141	29081	36866	0	44
P-0023014-T01-IM6	SOMATIC	SHOC2	SHOC2	10	10	112760221	112761112	Exon 4 of SHOC2(+)	Intron of SHOC2(+):809bp after exon 4		GRCh37	INVERSION	10	66	Antisense Fusion	PRECISE	3to3	SHOC2 (NM_007373) rearrangement: c.890_c.972+809inv	yes	unknown	891	740	587	0	66
P-0034877-T01-IM6	SOMATIC	SHOC2	TSC22D1	13	10	45064416	112769116	Intron of TSC22D1(-):56Kb before exon 2	Exon 7 of SHOC2(+)		GRCh37	TRANSLOCATION	10	46	Protein Fusion: mid-exon  {SHOC2:TSC22D1}	PRECISE	3to3	SHOC2 (NM_007373) - TSC22D1 (NM_183422) rearrangement: t(10;13)(q25.2;q14.11)(chr10:g.112769116::chr13:g.45064416)	yes	unknown	0	0	0	0	46
P-0065845-T01-IM7	SOMATIC	SHQ1	SHQ1	3	3	72020705	72866251	IGR: 64Kb before LINC00877(-)	Intron of SHQ1(-):129bp after exon 7		GRCh37	DELETION	10	21	SHQ1-intragenic	PRECISE	3to5	SHQ1 (NM_018130) rearrangement: c.882+130:SHQ1_chr3:g.72020705del	yes	unknown	845546	14066	16979	0	21
P-0077707-T01-IM7	SOMATIC	SHQ1	SHQ1	3	3	70177766	72866548	IGR: 129Kb before LINC01212(+)	Intron of SHQ1(-):13bp before exon 7		GRCh37	INVERSION	10	32	SHQ1-intragenic	PRECISE	3to3	SHQ1 (NM_018130) rearrangement: c.728-13:SHQ1_chr3:g.70177766inv	yes	unknown	2688782	28998	39974	0	31
P-0027645-T01-IM6	SOMATIC	SHQ1		3	3	72799596	72810722	Exon 11 of SHQ1(-)	Intron of SHQ1(-):11Kb before exon 11		GRCh37	INVERSION			SHQ1-intragenic	PRECISE	3to3	SHQ1 (NM_018130) rearrangement: c.1182-10735_c.1573inv			11126	2173	2300	0	26
P-0085606-T02-IM7	SOMATIC	SHQ1		3	3	72800184	72853839	Intron of SHQ1(-):197bp before exon 11	Intron of SHQ1(-):8Kb after exon 9		GRCh37	INVERSION			SHQ1-intragenic	PRECISE	3to3	SHQ1 (NM_018130) rearrangement: c.1060+7983_c.1182-197inv			53655	1145	1200	0	5
P-0004299-T02-IM5	SOMATIC	SIPA1L1	MLL	14	11	71995903	118361950	Promoter of SIPA1L1(+): 139bp from tx start	Exon 14 of MLL(+)		GRCh37	TRANSLOCATION	6	7	Antisense fusion	PRECISE	3to3	MLL (NM_001197104) rearrangement: t(11;14)(q23.3;q24.2)(chr11:g.118361950::chr14:g.71995903)	yes	unknown	0	0	0	0	7
P-0044246-T01-IM6	SOMATIC	SIPA1L3	KDM5C	X	19	53231096	38649964	Exon 13 of KDM5C(-)	Intron of SIPA1L3(+):3Kb before exon 14		GRCh37	TRANSLOCATION	10	17	Protein Fusion: mid-exon  {SIPA1L3:KDM5C}	PRECISE	3to3	SIPA1L3 (NM_015073) - KDM5C (NM_004187) rearrangement: t(19;X)(q13.13;p11.22)(chr19:g.38649964::chrX:g.53231096)	yes	unknown	0	0	0	0	18
P-0043243-T01-IM6	SOMATIC	SIRT2	ANKRD11	19	16	39372774	89351636	Intron of SIRT2(-):643bp before exon 10	Exon 9 of ANKRD11(-)		GRCh37	TRANSLOCATION	10	9	Protein Fusion: mid-exon  {SIRT2:ANKRD11}	PRECISE	5to3	SIRT2 (NM_012237) - ANKRD11 (NM_013275) rearrangement: t(16;19)(q24.3;q13.2)(chr16:g.89351636::chr19:g.39372774)	yes	unknown	0	0	0	0	9
P-0039058-T01-IM6	SOMATIC	SKIL	PRKCI	3	3	170013696	170094627	Intron of PRKCI(+):2bp before exon 15	Intron of SKIL(+):4Kb before exon 4		GRCh37	DUPLICATION	10	30	Protein Fusion: out of frame  {SKIL:PRKCI}	PRECISE	5to3	SKIL (NM_001248008) - PRKCI (NM_002740) rearrangement: c.1099-4405:SKIL_c.1418-3:PRKCIdup	yes	unknown	80931	3650	4840	0	32
P-0059756-T01-IM7	SOMATIC	SLC13A3	ERBB4	20	2	45265989	212537951	Intron of SLC13A3(-):14Kb after exon 1	Exon 14 of ERBB4(-)		GRCh37	TRANSLOCATION	10	22	Protein Fusion: mid-exon  {SLC13A3:ERBB4}	PRECISE	5to3	SLC13A3 (NM_022829) - ERBB4 (NM_005235) rearrangement: t(2;20)(q34;q13.12)(chr2:g.212537951::chr20:g.45265989)	yes	unknown	0	0	0	0	24
P-0017989-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37483962	38061669	Intron of SLC25A21(-):140Kb before exon 2	Exon 2 of FOXA1(-)		GRCh37	DUPLICATION	10	12	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	PRECISE	5to3	SLC25A21 (NM_030631) - FOXA1 (NM_00449) rearrangement: c.71-139753:SLC25A21_c.320:FOXA1dup	yes	unknown	577707	10996	14967	0	12
P-0034676-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37582786	38061813	Intron of SLC25A21(-):59Kb after exon 1	Exon 2 of FOXA1(-)		GRCh37	DUPLICATION	5	4	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	PRECISE	5to3	SLC25A21(NM_030631) -  FOXA1 (NM_004496) rearrangement: c.70+58700:SLC25A21_c.176:FOXA1dup	yes	unknown	479027	11413	16570	0	4
P-0030109-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37310353	38064146	Intron of SLC25A21(-):27Kb before exon 3	Exon 1 of FOXA1(-)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {SLC25A21:FOXA1}	PRECISE	5to3	SLC25A21 (NM_030631) - FOXA1 (NM_004496) rearrangement: c.120-27147:SLC25A21_c.32:FOXA1dup			753793	9695	12158	0	4
P-0081656-T01-IM7	SOMATIC	SLC25A21	NKX2-1	14	14	36989298	37195893	Exon 1 of NKX2-1(-)	Intron of SLC25A21(-):1Kb before exon 6		GRCh37	DELETION			Protein Fusion: mid-exon  {SLC25A21:NKX2-1}	PRECISE	3to5	SLC25A21 (NM_030631) - NKX2-1 (NM_001079668) rearrangement: c.331-1011:SLC25A21_c.37:NKX2-1del			206595	4130	4885	0	10
P-0027418-T01-IM6	SOMATIC	SLC30A6	MSH6	2	2	32398951	48027664	Intron of SLC30A6(+):180bp before exon 2	Exon 4 of MSH6(+)		GRCh37	INVERSION	10	14	Antisense Fusion	PRECISE	3to3	MSH6 (NM_000179) rearrangement: c.2542:MSH6_chr2:g.32398951inv	yes	unknown	15628713	128590	192803	0	14
P-0041866-T01-IM6	SOMATIC	SLC34A1	NSD1	5	5	176722298	176817240	Exon 23 of NSD1(+)	Intron of SLC34A1(+):2Kb after exon 8		GRCh37	DUPLICATION	9	2	Protein Fusion: mid-exon  {SLC34A1:NSD1}	PRECISE	5to3	SLC34A1 (NM_003052) - NSD1 (NM_022455) rearrangement: c.936+1867:SLC34A1_c.7929:NSD1dup	yes	unknown	94942	1227	988	0	2
P-0019612-T01-IM6	SOMATIC	SLC34A2	ROS1								GRCh37				SLC34A2-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC34A2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC34A2 Exon13 (NM_006424) and ROS1 Exon32 (NM_002944).	yes	unknown					
P-0014177-T01-IM5	SOMATIC	SLC34A2	ROS1								GRCh37				SLC34A2-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC34A2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC34A2 Exon13 (NM_006424) and ROS1 Exon32 (NM_002944).	yes	unknown					
P-0017752-T01-IM6	SOMATIC	SLC34A2	ROS1								GRCh37				SLC34A2-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC34A2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC34A2 Exon13 (NM_006424) and ROS1 Exon32 (NM_002944).	yes	unknown					
P-0027612-T02-IM7	SOMATIC	SLC34A2	ROS1								GRCh37				SLC34A2-ROS1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC34A2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC34A2 Exon13 (NM_006424) and ROS1 Exon32 (NM_002944).	yes	unknown					
P-0058933-T02-IM7	SOMATIC	SLC34A2	ROS1								GRCh37				SLC34A2-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SLC34A2-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC34A2 Exon13 (NM_006424) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0025836-T01-IM6	SOMATIC	SLC3A2	NRG1								GRCh37				SLC3A2-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC3A2-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC3A2 Exon4 (NM_002394) and NRG1 Exon6 (NM_004495).	yes	unknown					
P-0051251-T01-IM6	SOMATIC	SLC3A2	NRG1								GRCh37				SLC3A2-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC3A2-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC3A2 Exon5 (NM_002394) and NRG1 Exon6 (NM_004495).	yes	unknown					
P-0016313-T01-IM6	SOMATIC	SLC45A3	BRAF								GRCh37				SLC45A3-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC45A3-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SLC45A3 Exon1 (NM_033102) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0061935-T01-IM7	SOMATIC	SLC45A3	BRAF								GRCh37				SLC45A3-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC45A3-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SLC45A3 Exon1 (NM_033102) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0073868-T01-IM7	SOMATIC	SLC45A3	BRAF								GRCh37				SLC45A3-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SLC45A3-BRAF fusion. Note: The rearrangement is a fusion between genes SLC45A3 Exon1 (5' UTR, NM_033102) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0025718-T01-IM6	SOMATIC	SLC45A3	ERG								GRCh37				SLC45A3-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SLC45A3-ERG fusion. Note: The rearrangement is an in-frame fusion between genes SLC45A3 Exon1 (NM_033102) and ERG Exon2 (NM_182918).	yes	unknown					
P-0045690-T01-IM6	SOMATIC	SLC45A3	ETV1								GRCh37				SLC45A3-ETV1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC45A3-ETV1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC45A3 Exon1 (NM_033102) and ETV1 Exon6 (NM_004956).	yes	unknown					
P-0016313-T01-IM6	SOMATIC	SLC45A3	BRAF	7	1	140486608	205638452	Intron of BRAF(-):739bp after exon 9	5-UTR of SLC45A3(-):10Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {SLC45A3:BRAF}	PRECISE	3to5	SLC45A3 (NM_033102) - BRAF (NM_004333) fusion (SLC45A3 exons 1 fused to BRAF exons 10-18): t(1;7)(q32.1;q34)(chr1:g.205638452::chr7:g.140486608)			0	0	0	0	66
P-0026387-T01-IM6	SOMATIC	SLC4A4	NRG1								GRCh37				SLC4A4-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SLC4A4-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes SLC4A4 Exon14 (NM_001134742) and NRG1 Exon2 (NM_004495).	yes	unknown					
P-0024065-T01-IM6	SOMATIC	SLC4A7	MLH1	3	3	27506127	37090330	Intron of SLC4A7(-):12Kb before exon 2	Intron of MLH1(+):64bp before exon 18		GRCh37	INVERSION	6	4	Protein Fusion: in frame  {SLC4A7:MLH1}	PRECISE	5to5	SLC4A7 (NM_003615) - MLH1 (NM_000249) Rearrangement : c.61-12138:SLC4A7_c.1990-65:MLH1inv	yes	unknown	9584203	48478	43224	0	4
P-0075029-T01-IM7	SOMATIC	SLC7A6	CTCF	16	16	67645476	68313687	Exon 3 of CTCF(+)	Intron of SLC7A6(+):5Kb after exon 4		GRCh37	DUPLICATION	10	31	Protein Fusion: mid-exon  {SLC7A6:CTCF}	PRECISE	5to3	SLC7A6 (NM_003983) - CTCF (NM_006565) rearrangement: c.523+4535:SLC7A6_c.741:CTCFdup	yes	unknown	668211	17124	22713	0	33
P-0070557-T02-IM7	SOMATIC	SLCO1B3	PIK3C2G	12	12	18576750	21022986	Intron of PIK3C2G(+):128bp before exon 17	Intron of SLCO1B3(+):5Kb before exon 9		GRCh37	DUPLICATION	4	5	Protein Fusion: out of frame  {SLCO1B3:PIK3C2G}	PRECISE	5to3	SLCO1B3 (NM_019844) - PIK3C2G (NM_004570) rearrangement: c.728-5183:SLCO1B3_c.2287-129:PIK3C2Gdup	yes	unknown	2446236	26711	22245	0	5
P-0020964-T01-IM6	SOMATIC	SLCO2B1	MSH3	11	5	74883584	80149840	Exon 7 of SLCO2B1(+)	Intron of MSH3(+):108bp before exon 21		GRCh37	TRANSLOCATION	10	8	Protein Fusion: mid-exon  {SLCO2B1:MSH3}	PRECISE	3to5	SLCO2B1 (NM_007256) - MSH3 (NM_002439) rearrangement: t(5;11)(q14.1;q13.4)(chr5:g.80149840::chr11:g.74883584)	yes	unknown	0	0	0	0	8
P-0045135-T01-IM6	SOMATIC	SLX4	NACA	16	12	3632534	57113613	Exon 15 of SLX4(-)	Exon 3 of NACA(-)		GRCh37	TRANSLOCATION	0	14	Antisense Fusion	IMPPRECISE	5to5	SLX4 (NM_032444) rearrangement: t(12;16)(q13.3;p13.3)(chr12:g.57113613::chr16:g.3632534)	yes	unknown	0	0	0	0	14
P-0043220-T01-IM6	SOMATIC	SLX4	SNTG1	16	8	3639778	51449271	Exon 12 of SLX4(-)	Exon 11 of SNTG1(+)		GRCh37	TRANSLOCATION	10	32	Antisense Fusion	PRECISE	5to3	SLX4 (NM_032444) rearrangement: t(8;16)(q11.21;p13.3)(chr8:g.51449271::chr16:g.3639778)	yes	unknown	0	0	0	0	32
P-0031643-T01-IM6	SOMATIC	SLX4	SLX4	16	16	3629949	3640075	Promoter of SLX4(-):1Kb from tx start	Exon 12 of SLX4(-)		GRCh37	DELETION	10	46	Deletion within transcript : mid-exon	PRECISE	3to5	SLX4 (NM_032444) Rearrangement: c.*2394_c.3564del	yes	unknown	10126	17812	21804	0	96
P-0057369-T01-IM6	SOMATIC	SLX4	MGRN1	16	16	3644545	4738720	Exon 10 of SLX4(-)	Intron of MGRN1(+):76bp before exon 17		GRCh37	INVERSION	10	23	Protein Fusion: mid-exon  {SLX4:MGRN1}	PRECISE	5to5	SLX4 (NM_032444) - MGRN1 (NM_015246) rearrangement: c.2069:SLX4_c.1619-77:MGRN1inv	yes	unknown	1094175	117381	137944	0	30
P-0065700-T02-IM7	SOMATIC	SLX4	RBFOX1	16	16	3650959	7516832	Intron of SLX4(-):20bp after exon 5	Intron of RBFOX1(+):51Kb before exon 3		GRCh37	DELETION	10	14	SLX4-intragenic	PRECISE	3to5	SLX4 (NM_032444) rearrangement: c.1163+21:SLX4_chr16:g.7516832del	yes	unknown	3865873	85304	179121	0	15
P-0029141-T01-IM6	SOMATIC	SLX4		16	16	3617116	3639988	3-UTR of NLRC3(-):10Kb after coding stop	Exon 12 of SLX4(-)		GRCh37	DELETION			SLX4-intragenic	PRECISE	3to5	SLX4 (NM_032444) rearrangement: c.3651:SLX4_chr16:g.3617116del			22872	17169	20172	0	25
P-0078097-T01-IM7	SOMATIC	SLX4	SLX4	19	16	37372577	3656776	5-UTR of ZNF345(+):12Kb before coding start	Intron of SLX4(-):77bp before exon 3		GRCh37	TRANSLOCATION	10	9	Transcript Fusion {ZNF345:SLX4}	PRECISE	3to3	SLX4 (NM_032444) rearrangement: t(16;19)(p13.3;q13.12)(chr16:g.3656776::chr19:g.37372577)	yes	unknown	0	0	0	0	9
P-0038658-T01-IM6	SOMATIC	SMAD2	SMAD2	20	18	25540026	45377627	5-UTR of NINL(-):106Kb before coding start	Intron of SMAD2(-):17bp after exon 7		GRCh37	TRANSLOCATION	10	15	Antisense Fusion	PRECISE	5to5	SMAD2 (NM_001003652) Rearrangement : t(18,20)(q21.1; p11.1) (chr12:g.56481635::chr7:g.83729009)	yes	unknown	0	0	0	0	15
P-0007664-T01-IM5	SOMATIC	SMAD2	SMAD2	18	18	45380596	45395526	Intron of SMAD2(-): 3Kb before exon 7	Intron of SMAD2(-): 88bp after exon 4		GRCh37	DELETION	28	18	Deletion of 2 exons: in frame	PRECISE	3to5	SMAD2 (NM_001003652) rearrangement: c.520+88_c.731-2898del	yes	unknown	14930	4753	4888	0	18
P-0007664-T01-IM5	SOMATIC	SMAD2	SMAD2	18	18	45395717	45397285	Exon 4 of SMAD2(-)	Intron of SMAD2(-): 350bp before exon 3		GRCh37	DELETION	51	41	Deletion within transcript: mid-exon	PRECISE	3to5	SMAD2 (NM_001003652) rearrangement: c.237-350_c.417del	yes	unknown	1568	2813	2211	0	41
P-0076672-T03-IM7	SOMATIC	SMAD2	SMAD2	18	18	45422845	45423837	Intron of SMAD2(-):46bp after exon 2	5-UTR of SMAD2(-):56Kb before coding start		GRCh37	DUPLICATION	10	86	Duplication within transcript	PRECISE	5to3	SMAD2 (NM_001003652) rearrangement: c.236+47:SMAD2_chr18:g.45423837dup	yes	unknown	992	997	2523	1	86
P-0067327-T01-IM7	SOMATIC	SMAD2		18	12	45372140	42143644	Exon 9 of SMAD2(-)	IGR: 312Kb before PDZRN4(+)		GRCh37	TRANSLOCATION			SMAD2-intragenic	PRECISE	5to5	SMAD2 (NM_001003652) rearrangement: t(12;18)(q12;q21.1)(chr12:g.42143644::chr18:g.45372140)			0	0	0	0	15
P-0035586-T01-IM6	SOMATIC	SMAD3		15	15	67430421	67497181	Intron of SMAD3(+):27Kb before exon 2	Intron of AAGAB(-):695bp before exon 8		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	SMAD3 (NM_005902) rearrangement: c.207-26812:SMAD3_chr15:g.67497181del			66760	12984	13893	0	30
P-0020845-T02-IM6	SOMATIC	SMAD3		15	15	67454627	67457430	Intron of SMAD3(+):3Kb before exon 2	Intron of SMAD3(+):4bp after exon 2		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	SMAD3 (NM_005902) rearrangement: c.207-2606_c.400+4dup			2803	1879	3691	0	125
P-0086232-T01-IM7	SOMATIC	SMAD3		15	15	67368027	67482794	Intron of SMAD3(+):9Kb after exon 1	Exon 9 of SMAD3(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	SMAD3 (NM_005902) rearrangement: c.206+9329_c.1198dup			114767	9617	29157	0	115
P-0044827-T01-IM6	SOMATIC	SMAD3	ASPSCR1	17	15	79944678	67482866	Intron of ASPSCR1(+):1Kb after exon 4	Exon 9 of SMAD3(+)		GRCh37	TRANSLOCATION	10	55	Protein Fusion: mid-exon  {SMAD3:ASPSCR1}	PRECISE	5to3	SMAD3 (NM_005902) - ASPSCR1 (NM_001251888) rearrangement: t(15;17)(q22.33;q25.3)(chr15:g.67482866::chr17:g.79944678)	yes	unknown	0	0	0	0	54
P-0015244-T01-IM6	SOMATIC	SMAD3	FBXW7	15	4	67479765	153290194	Exon 8 of SMAD3(+)	Intron of FBXW7(-): 13Kb after exon 1		GRCh37	TRANSLOCATION	17	8	Protein fusion: mid-exon (FBXW7-SMAD3)	PRECISE	5to5	FBXW7 (NM_033632) - SMAD3 (NM_005902) rearrangement: t(4;15)(q31.3;q22.33)(chr4:g.153290194::chr15:g.67479765)	yes	unknown	0	0	0	0	8
P-0007793-T01-IM5	SOMATIC	SMAD3	IQCH	15	15	67482771	67664883	Exon 9 of SMAD3(+)	Exon 9 of IQCH(+)		GRCh37	DELETION	30	16	Protein fusion: mid-exon (SMAD3-IQCH)	PRECISE	3to5	SMAD3 (NM_005902) - IQCH (NM_001031715) Rearrangement : c.1175:SMAD3_c.1188:IQCHdel	yes	unknown	182112	591	551	0	16
P-0032311-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67353055	67457104	IGR: 5Kb before SMAD3(+)	Intron of SMAD3(+):128bp before exon 2		GRCh37	DELETION	0	7	SMAD3-intragenic	IMPPRECISE	3to5	SMAD3 (NM_005902) rearrangement: c.207-129:SMAD3_chr15:g.67353055del	yes	unknown	104049	2393	727	0	7
P-0037028-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67333415	67457554	IGR: 25Kb before SMAD3(+)	Intron of SMAD3(+):36bp before exon 3		GRCh37	DELETION	10	72	SMAD3-intragenic	PRECISE	3to5	SMAD3 (NM_005902) rearrangement: c.401-37:SMAD3_chr15:g.67333415del	yes	unknown	124139	4809	5071	0	74
P-0069809-T01-IM7	SOMATIC	SMAD3	SMAD3	15	15	58163024	67482850	IGR: 83Kb before ALDH1A2(-)	Exon 9 of SMAD3(+)		GRCh37	INVERSION	0	8	SMAD3-intragenic	IMPPRECISE	3to3	SMAD3 (NM_005902) rearrangement: c.1254:SMAD3_chr15:g.58163024inv	yes	unknown	9319826	42173	106281	0	8
P-0021630-T01-IM6	SOMATIC	SMAD3		15	15	67479883	80014264	Intron of SMAD3(+):36bp after exon 8	IGR: 122Kb before MTHFS(-)		GRCh37	INVERSION			SMAD3-intragenic	PRECISE	3to3	SMAD3 (NM_005902) rearrangement: c.1154+36:SMAD3_chr15:g.80014264inv			12534381	35503	27563	0	12
P-0033383-T01-IM6	SOMATIC	SMAD3		15	15	62843216	67457608	IGR: 86Kb before MGC15885(-)	Exon 3 of SMAD3(+)		GRCh37	INVERSION			SMAD3-intragenic	PRECISE	3to3	SMAD3 (NM_005902) Rearrangement: c.418:SMAD3_chr15:g.62843216inv			4614392	35407	48912	0	57
P-0030749-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48578903	48592061	Intron of SMAD4(+):2Kb before exon 5	Intron of SMAD4(+):85bp after exon 9		GRCh37	INVERSION	10	7	Antisense Fusion	PRECISE	3to3	SMAD4 (NM_005359) rearrangement:  c.455-2248_c.1139+85inv	yes	unknown	13158	4085	4609	0	7
P-0046474-T02-IM6	SOMATIC	SMAD4	SERPINB7	18	18	48575163	61422486	Exon 3 of SMAD4(+)	5-UTR of SERPINB7(+):27Kb before coding start		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	SMAD4 (NM_005359) rearrangement: c.357:SMAD4_chr18:g.61422486inv	yes	unknown	12847323	42056	11613	0	12
P-0018529-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48564646	48591896	5-UTR of SMAD4(+):9Kb before coding start	Exon 9 of SMAD4(+)		GRCh37	INVERSION	10	29	Antisense Fusion	PRECISE	3to3	SMAD4 (NM_005359) rearrangement: c.1059:SMAD4_chr18:g.48564646inv	yes	unknown	27250	7670	8672	0	29
P-0057653-T01-IM6	SOMATIC	SMAD4		18	18	48601293	48604507	Intron of SMAD4(+):2Kb before exon 11	Intron of SMAD4(+):118bp before exon 12		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1309-1715_c.1448-119del			3214	1518	1142	0	26
P-0075243-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48578627	48584628	Intron of SMAD4(+):3Kb before exon 5	Intron of SMAD4(+):14bp after exon 6		GRCh37	DELETION	10	22	Deletion of 2 exons : in frame	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.455-2524_c.787+14del	yes	unknown	6001	2071	1890	0	22
P-0083447-T01-IM7	SOMATIC	SMAD4		18	18	48573761	48577697	Intron of SMAD4(+):96bp after exon 2	Intron of SMAD4(+):2Kb after exon 4		GRCh37	DELETION			Deletion of 2 exons : out of frame	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.249+96_c.454+2003del			3936	1921	940	0	13
P-0042018-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48575887	48589541	Intron of SMAD4(+):193bp after exon 4	Intron of SMAD4(+):2Kb before exon 9		GRCh37	DELETION	8	9	Deletion of 4 exons : in frame	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.454+193_c.956-2252del	yes	unknown	13654	4391	2319	0	8
P-0063588-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48589246	48591962	Intron of SMAD4(+):3Kb before exon 9	Exon 9 of SMAD4(+)		GRCh37	DELETION	0	6	Deletion within transcript : mid-exon	IMPPRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.956-2547_c.1125del	yes	unknown	2716	1109	1810	0	6
P-0069329-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48584592	48586906	Exon 6 of SMAD4(+)	Intron of SMAD4(+):620bp after exon 8		GRCh37	DELETION	10	42	Deletion within transcript : mid-exon	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.765_c.955+620del	yes	unknown	2314	2201	1262	0	43
P-0076708-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48591973	48593386	Exon 9 of SMAD4(+)	Intron of SMAD4(+):2bp before exon 10		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1136_c.1140-3del	yes	unknown	1413	465	827	0	5
P-0063289-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48593443	48595666	Exon 10 of SMAD4(+)	Intron of SMAD4(+):2Kb after exon 10		GRCh37	DELETION	10	14	Deletion within transcript : mid-exon	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1194_c.1308+2109del	yes	unknown	2223	648	570	0	14
P-0061622-T01-IM7	SOMATIC	SMAD4		18	18	48592566	48593497	Intron of SMAD4(+):590bp after exon 9	Exon 10 of SMAD4(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1139+590_c.1248del			931	634	635	0	6
P-0003008-T01-IM3	SOMATIC	SMAD4	SMAD4	18	18	48573692	48584923	Intron of SMAD4(+): 27bp after exon 2	Intron of SMAD4(+): 97bp after exon 7		GRCh37	DUPLICATION	9	6	Duplication of 5 exons: out of frame	PRECISE	5to3		yes	unknown	11231	5135	3848	0	6
P-0069357-T02-IM7	SOMATIC	SMAD4	SMAD4	18	18	48575574	48597040	Intron of SMAD4(+):90bp before exon 4	Intron of SMAD4(+):3Kb after exon 10		GRCh37	DUPLICATION	10	52	Duplication of 7 exons : out of frame	PRECISE	5to3	SMAD4 (NM_005359) rearrangement: c.425-91_c.1308+3483dup	yes	unknown	21466	6055	15740	0	52
P-0023385-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48562072	48593612	5-UTR of SMAD4(+):11Kb before coding start	Intron of SMAD4(+):55bp after exon 10		GRCh37	DUPLICATION	10	4	Duplication within transcript	PRECISE	5to3	SMAD4 (NM_005359) rearrangement: c.-128+5079_c.1308+55dup	yes	unknown	31540	14554	12712	0	4
P-0078997-T01-IM7	SOMATIC	SMAD4	SND1	18	7	48591950	127291317	Exon 9 of SMAD4(+)	Promoter of SND1(+):884bp from tx start		GRCh37	TRANSLOCATION	10	16	Protein Fusion: mid-exon  {SMAD4:SND1}	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: t(7;18)(q32.1;q21.2)(chr7:g.127291317::chr18:g.48591950)	yes	unknown	0	0	0	0	16
P-0012505-T01-IM5	SOMATIC	SMAD4	UNC13C	18	15	48584727	54879988	Exon 7 of SMAD4(+)	Intron of UNC13C(+): 20Kb after exon 28		GRCh37	TRANSLOCATION	34	58	Protein fusion: mid-exon (SMAD4-UNC13C)	PRECISE	3to5	SMAD4 (NM_005359) - UNC13C (NM_001080534) rearrangement: t(15;18)(q21.3;q21.2)(chr15:g.54879988::chr18:g.48584727)	yes	unknown	0	0	0	0	57
P-0012673-T02-IM6	SOMATIC	SMAD4	CARD8	19	18	48739416	48575787	Intron of CARD8(-):2Kb before exon 6	Intron of SMAD4(+):93bp after exon 4		GRCh37	TRANSLOCATION	0	12	Protein Fusion: out of frame  {SMAD4:CARD8}	IMPPRECISE	3to3	SMAD4 (NM_005359) - CARD8 (NM_001184901) rearrangement: t(18;19)(q21.2;q13.33)(chr18:g.48575787::chr19:g.48739416)	yes	unknown	0	0	0	0	12
P-0046202-T01-IM6	SOMATIC	SMAD4	TTC28	22	18	29065731	48592015	Intron of TTC28(-):10Kb after exon 1	Intron of SMAD4(+):39bp after exon 9		GRCh37	TRANSLOCATION	0	11	Protein Fusion: out of frame  {SMAD4:TTC28}	IMPPRECISE	3to3	SMAD4 (NM_005359) - TTC28 (NM_001145418) rearrangement: t(18;22)(q21.2;q12.1)(chr18:g.48592015::chr22:g.29065731)	yes	unknown	0	0	0	0	11
P-0019880-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48531265	48573453	IGR: 25Kb before SMAD4(+)	Exon 2 of SMAD4(+)		GRCh37	DELETION	10	8	SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: chr18:g.48531265_c.37:SMAD4del	yes	unknown	42188	273	168	0	10
P-0038557-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48486870	48581112	IGR: 8Kb before ELAC1(+)	Intron of SMAD4(+):38bp before exon 5		GRCh37	DELETION	9	8	SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) Rearrangement : chr18:g.48486870_c.455-39del	yes	unknown	94242	2985	951	0	9
P-0002488-T01-IM3	SOMATIC	SMAD4	SMAD4	18	18	48604772	48606495	Exon 12 of SMAD4(+)	3-UTR of SMAD4(+): 2Kb after coding stop		GRCh37	DELETION	99	71	SMAD4-intragenic	PRECISE	3to5		yes	unknown	1723	581	122	0	122
P-0051782-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48601020	48604893	Intron of SMAD4(+):2Kb before exon 11	3-UTR of SMAD4(+):31Kb after coding stop		GRCh37	DELETION	0	12	SMAD4-intragenic	IMPPRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1309-1988:SMAD4_chr18:g.48604893del	yes	unknown	3873	2021	1052	0	12
P-0040725-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48566953	48584741	5-UTR of SMAD4(+):6Kb before coding start	Exon 7 of SMAD4(+)		GRCh37	INVERSION	7	4	SMAD4-intragenic	PRECISE	5to5	SMAD4 (NM_005359) rearrangement: c.819:SMAD4_chr18:g.48566953inv	yes	unknown	17788	4361	6064	0	4
P-0062055-T02-IM7	SOMATIC	SMAD4	SMAD4	18	18	48573540	48621397	Exon 2 of SMAD4(+)	IGR: 65Kb before SMAD4(+)		GRCh37	DELETION	10	9	SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.124:SMAD4_chr18:g.48621397del	yes	unknown	47857	11692	18985	0	18
P-0064342-T01-IM7	SOMATIC	SMAD4	SLC16A7	18	12	48592039	60365836	Intron of SMAD4(+):63bp after exon 9	IGR: 283Kb before SLC16A7(+)		GRCh37	TRANSLOCATION	10	10	SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: t(12;18)(q14.1;q21.2)(chr12:g.60365836::chr18:g.48592039)	yes	unknown	0	0	0	0	10
P-0066862-T01-IM7	SOMATIC	SMAD4	MEX3C	18	18	48591917	48687453	Exon 9 of SMAD4(+)	IGR: 13Kb before MEX3C(-)		GRCh37	DELETION	10	11	SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: c.1080:SMAD4_chr18:g.48687453del	yes	unknown	95536	4437	3941	0	11
P-0069202-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	9058526	48604793	IGR: 44Kb before NDUFV2(+)	Exon 12 of SMAD4(+)		GRCh37	INVERSION	10	22	SMAD4-intragenic	PRECISE	3to3	SMAD4 (NM_005359) rearrangement: c.1615:SMAD4_chr18:g.9058526inv	yes	unknown	39546267	146644	179184	0	22
P-0008283-T01-IM5	SOMATIC	SMAD4		18	6	48591962	153659215	Exon 9 of SMAD4(+)	IGR: 327Kb before RGS17(-)		GRCh37	TRANSLOCATION			SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: t(6;18)(q36.2;q21.2)(chr6:g.153659215::chr18:g.48591962)			0	0	0	0	18
P-0026123-T01-IM6	SOMATIC	SMAD4		18	17	48591841	25550206	Exon 9 of SMAD4(+)	IGR: 71Kb before MIR4522(-)		GRCh37	TRANSLOCATION			SMAD4-intragenic	PRECISE	3to5	SMAD4 (NM_005359) rearrangement: t(17;18)(q11.1;q21.1)(chr17:g.:25550206::chr18:g.48591841)			0	0	0	0	11
P-0029022-T01-IM6	SOMATIC	SMAD4		18	12	48584555	96912182	Exon 6 of SMAD4(+)	IGR: 240Kb before CDK17(-)		GRCh37	TRANSLOCATION			SMAD4-intragenic	PRECISE	5to3	SMAD4 (NM_005359) Rearrangement : t(12,18)(q23.1,q21.2)(chr12:g.96912182::chr18:g.48584555)			0	0	0	0	12
P-0048161-T01-IM6	SOMATIC	SMAD4		18	18	48593480	48835676	Exon 10 of SMAD4(+)	IGR: 83Kb before LOC100287225(+)		GRCh37	INVERSION			SMAD4-intragenic	PRECISE	3to3	SMAD4 (NM_005359) rearrangement: c.1231:SMAD4_chr18:g.48835676inv			242196	2583	1629	0	32
P-0087373-T01-IM7	SOMATIC	SMAD4		18	18	48557064	54135304	5-UTR of SMAD4(+):16Kb before coding start	IGR: 135Kb before TXNL1(-)		GRCh37	INVERSION			SMAD4-intragenic	PRECISE	5to5	SMAD4 (NM_005359) rearrangement: c.-128+71:SMAD4_chr18:g.54135304inv			5578240	24434	32620	0	10
P-0085962-T02-IM7	SOMATIC	SMARCA2		9	9	2114360	2119602	Intron of SMARCA2(+):1Kb before exon 25	Intron of SMARCA2(+):67bp after exon 26		GRCh37	DUPLICATION			Duplication of 2 exons : in frame	PRECISE	5to3	SMARCA2 (NM_003070) rearrangement: c.3457-1462_c.3762+67dup			5242	2908	5093	0	4
P-0020402-T01-IM6	SOMATIC	SMARCA2	EWSR1	22	9	29684038	2157696	Intron of EWSR1(+):556bp before exon 9	Intron of SMARCA2(+):4Kb before exon 28		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {SMARCA2:EWSR1}	PRECISE	5to3	SMARCA2 (NM_003070) - EWSR1 (NM_013986) rearragement: t(9;22)(p24.3;q12.2)(chr9:g.2157696::chr22:g.29684038)			0	0	0	0	16
P-0067013-T01-IM7	SOMATIC	SMARCA2	IZUMO3	9	9	2186397	24749444	Intron of SMARCA2(+):169bp after exon 32	IGR: 206Kb before IZUMO3(-)		GRCh37	DELETION	8	12	SMARCA2-intragenic	PRECISE	3to5	SMARCA2 (NM_003070) rearrangement: c.4594+169:SMARCA2_chr9:g.2479444del	yes	unknown	22563047	245993	257919	0	12
P-0078393-T01-IM7	SOMATIC	SMARCA2	FAM154A	9	9	2096631	18916049	Intron of SMARCA2(+):25bp before exon 20	IGR: 12Kb before FAM154A(-)		GRCh37	INVERSION	10	24	SMARCA2-intragenic	PRECISE	5to5	SMARCA2 (NM_003070) rearrangement: c.2884-26: SMARCA2_chr9:g.18916049inv	yes	unknown	16819418	158805	249615	0	32
P-0012895-T03-IM6	SOMATIC	SMARCA4	VPS13A	19	9	11144367	79802479	Intron of SMARCA4(+):75bp before exon 27	Intron of VPS13A(+):10Kb after exon 1		GRCh37	TRANSLOCATION	10	7	Antisense Fusion	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: t(9;19)(q21.2;p13.2)(chr9:g.79802479::chr19:g.11144367)	yes	unknown	0	0	0	0	7
P-0050906-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11165926	11170934	Intron of SMARCA4(+):3Kb before exon 31	Intron of SMARCA4(+):71bp after exon 34		GRCh37	INVERSION	10	49	Antisense Fusion	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: c.4425-3005_c.4911+71inv	yes	unknown	5008	9125	4006	0	55
P-0069848-T01-IM7	SOMATIC	SMARCA4	PRR35	19	16	11118938	611205	Intron of SMARCA4(+):239bp after exon 14	5-UTR of PRR35(+):2Kb before coding start		GRCh37	TRANSLOCATION	10	8	Antisense Fusion	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: t(16;19)(p13.3;p13.2)(chr16:g.611205::chr19:g.11118938)	yes	unknown	0	0	0	0	8
P-0083851-T01-IM7	SOMATIC	SMARCA4		19	19	10834195	11095170	Intron of DNM2(+):5Kb after exon 1	Intron of SMARCA4(+):121bp after exon 2		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: c.222+121:SMARCA4_chr19:g.10834195inv			260975	25014	65748	0	58
P-0012400-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11144964	11147873	Intron of SMARCA4(+): 88bp after exon 26	Intron of SMARCA4(+): 2Kb after exon 27		GRCh37	DELETION	25	21	Deletion of 1 exon: in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.3951+88_c.4170+2065del	yes	unknown	2909	3035	2330	0	20
P-0071752-T01-IM7	SOMATIC	SMARCA4		19	19	11111083	11141611	Intron of SMARCA4(+):3Kb before exon 12	Intron of SMARCA4(+):42bp after exon 25		GRCh37	DELETION			Deletion of 14 exons : in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1813-2622_c.3546+42del			30528	21361	25107	0	9
P-0040366-T01-IM6	SOMATIC	SMARCA4		19	19	11143056	11144702	Intron of SMARCA4(+):909bp before exon 26	Intron of SMARCA4(+):96bp before exon 28		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.3547-910_c.3874-97del			1646	2688	2888	0	7
P-0033183-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11101786	11170345	Intron of SMARCA4(+):39bp before exon 8	Intron of SMARCA4(+):83bp before exon 33		GRCh37	DELETION	10	38	Deletion of 25 exons : in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1246-40_c.4636-84del	yes	unknown	68559	49191	33394	0	39
P-0069605-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11169068	11171903	Intron of SMARCA4(+):29bp after exon 32	Intron of SMARCA4(+):556bp before exon 36		GRCh37	DELETION	10	31	Deletion of 3 exons : in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.4533+29_c.4912-557del	yes	unknown	2835	3791	5414	0	31
P-0054225-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11110164	11118720	Intron of SMARCA4(+):3Kb after exon 11	Intron of SMARCA4(+):21bp after exon 14		GRCh37	DELETION	5	3	Deletion of 3 exons : out of frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1812+2944_c.2123+21del	yes	unknown	8556	4635	4434	0	3
P-0058086-T02-IM6	SOMATIC	SMARCA4		19	19	11135194	11150253	Intron of SMARCA4(+):80bp after exon 21	Intron of SMARCA4(+):2Kb before exon 30		GRCh37	DELETION			Deletion of 8 exons : in frame	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.3081+80_c.4171-1730del			15059	20324	16510	0	85
P-0031881-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11093573	11170417	5-UTR of SMARCA4(+):1Kb before coding start	Intron of SMARCA4(+):11bp before exon 33		GRCh37	DELETION	10	41	Deletion within transcript	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.-31-1224_c.4636-12del	yes	unknown	76844	95261	58929	0	45
P-0070426-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11088240	11123486	5-UTR of SMARCA4(+):7Kb before coding start	Intron of SMARCA4(+):138bp before exon 16		GRCh37	DELETION	10	25	Deletion within transcript	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.2275-139:SMARCA4_chr19:g.11088240del	yes	unknown	35246	28250	29525	0	25
P-0019607-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11169386	11170461	Intron of SMARCA4(+):77bp before exon 32	Exon 33 of SMARCA4(+)		GRCh37	DELETION	0	18	Deletion within transcript : mid-exon	IMPPRECISE	3to5	SMARCA4 (NM_003072) Rearrangement : c.4534-78_c.4668del	yes	unknown	1075	2090	3652	0	18
P-0048114-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11106966	11108801	Exon 10 of SMARCA4(+)	Intron of SMARCA4(+):2Kb after exon 11		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1671_c.1812+1581del	yes	unknown	1835	2235	3116	0	10
P-0051651-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11095794	11097667	Intron of SMARCA4(+):154bp before exon 3	Exon 5 of SMARCA4(+)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.223-155_c.847del	yes	unknown	1873	8363	8548	0	8
P-0052791-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11084200	11105641	5-UTR of SMARCA4(+):11Kb before coding start	Exon 9 of SMARCA4(+)		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1557:SMARCA4_chr19:g.11084200del	yes	unknown	21441	23999	18446	0	6
P-0041298-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11086045	11132550	5-UTR of SMARCA4(+):9Kb before coding start	Exon 19 of SMARCA4(+)		GRCh37	DELETION	7	8	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.2766:SMARCA4_chr19:g.11086045del	yes	unknown	46505	32355	24616	0	8
P-0061711-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11170861	11172458	Exon 35 of SMARCA4(+)	Intron of SMARCA4(+):1bp before exon 36		GRCh37	DELETION	3	3	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.4909_c.4912-2del	yes	unknown	1597	916	1211	0	3
P-0039219-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11110660	11113812	Intron of SMARCA4(+):3Kb before exon 12	Exon 12 of SMARCA4(+)		GRCh37	DELETION	10	21	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1813-3045_c.1920del	yes	unknown	3152	1159	901	0	23
P-0071584-T02-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11095360	11097247	Intron of SMARCA4(+):311bp after exon 2	Exon 4 of SMARCA4(+)		GRCh37	DELETION	10	25	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.222+311_c.738del	yes	unknown	1887	2908	2409	0	26
P-0082584-T01-IM7	SOMATIC	SMARCA4		19	19	11147683	11168972	Intron of SMARCA4(+):2Kb after exon 29	Exon 32 of SMARCA4(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.4170+1875_c.4466del			21289	4309	1962	0	88
P-0017224-T01-IM6	SOMATIC	SMARCA4		19	19	11143148	11145772	Intron of SMARCA4(+):817bp before exon 26	Exon 29 of SMARCA4(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.3547-818_c.4134del			2624	6592	5795	0	21
P-0014430-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11075863	11123718	5-UTR of SMARCA4(+): 19Kb before coding start	Exon 15 of SMARCA4(+)		GRCh37	DELETION	28	22	Deletion within transcript: mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.-32+4013_c.2368del	yes	unknown	47855	41618	28318	0	22
P-0007125-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11083179	11098368	5-UTR of SMARCA4(+): 12Kb before coding start	Exon 5 of SMARCA4(+)		GRCh37	DELETION	43	16	Deletion within transcript: mid-exon	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.-32+11329_c.886del	yes	unknown	15189	17534	15210	0	15
P-0041007-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11116690	11144276	Intron of SMARCA4(+):2Kb before exon 14	Intron of SMARCA4(+):83bp after exon 26		GRCh37	DUPLICATION	10	45	Duplication of 13 exons : in frame	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.2002-1888_c.3774+83dup	yes	unknown	27586	25796	28838	0	50
P-0076134-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11122149	11134663	Intron of SMARCA4(+):942bp after exon 15	Intron of SMARCA4(+):343bp before exon 21		GRCh37	DUPLICATION	6	5	Duplication of 5 exons : in frame	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.2274+942_c.2974-344dup	yes	unknown	12514	8633	12306	0	5
P-0023453-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11095773	11107671	Intron of SMARCA4(+):175bp before exon 3	Intron of SMARCA4(+):451bp after exon 11		GRCh37	DUPLICATION	8	8	Duplication of 9 exons : in frame	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.223-176_c.1812+451dup	yes	unknown	11898	24543	34902	0	8
P-0056128-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11096064	11143947	Exon 3 of SMARCA4(+)	Intron of SMARCA4(+):18bp before exon 26		GRCh37	DUPLICATION	10	8	Duplication within transcript : mid-exon	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.338_c.3547-19dup	yes	unknown	47883	62557	40576	0	8
P-0066306-T01-IM7	SOMATIC	SMARCA4		19	19	11145775	11162264	Exon 29 of SMARCA4(+)	Intron of SMARCA4(+):7Kb before exon 32		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.4137_c.4425-6667dup			16489	3921	4000	0	3
P-0011343-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11107003	11112038	Exon 9 of SMARCA4(+)	Intron of SMARCA4(+): 2Kb before exon 11		GRCh37	DUPLICATION	6	8	Duplication within transcript: mid-exon	PRECISE	5to3	SMARCA4 (NM_003072) rearrangement: c.1708_c.1813-1667dup	yes	unknown	5035	1392	1715	0	7
P-0003063-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11123236	11134227	Intron of SMARCA4(+): 389bp before exon 15	Exon 19 of SMARCA4(+)		GRCh37	DUPLICATION	34	36	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	10991	12866	11082	0	36
P-0076354-T01-IM7	SOMATIC	SMARCA4	C19orf38	19	19	10977189	11114074	Intron of C19orf38(+):3Kb before exon 7	Intron of SMARCA4(+):1bp after exon 13		GRCh37	DUPLICATION	6	4	Protein Fusion: in frame  {SMARCA4:C19orf38}	PRECISE	5to3	SMARCA4 (NM_003072) - C19orf38 (NM_001136482) rearrangement: c.2001+1:SMARCA4_c.544-2705:C19orf38dup	yes	unknown	136885	43013	42607	0	4
P-0025693-T01-IM6	SOMATIC	SMARCA4	PLIN4	19	19	4513773	11102090	Intron of PLIN4(-):57bp before exon 3	Intron of SMARCA4(+):91bp after exon 8		GRCh37	INVERSION			Protein Fusion: in frame  {SMARCA4:PLIN4}	PRECISE	3to3	SMARCA4 (NM_003072) - PLIN4 (NM_001080400) rearrangement: c.1419+91:SMARCA4_c.214-57:PLIN4inv			6588317	179376	207831	0	12
P-0025693-T01-IM6	SOMATIC	SMARCA4	YJEFN3	19	19	11132765	19645800	Intron of SMARCA4(+):122bp after exon 19	Intron of YJEFN3(+):42bp before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {SMARCA4:YJEFN3}	PRECISE	3to5	SMARCA4 (NM_003072) - YJEFN3 (NM_001190328) rearrangement:  c.2859+122:SMARCA4_c.169-43C:YJEFN3del			8513035	238146	265904	0	8
P-0077073-T02-IM7	SOMATIC	SMARCA4	CARM1	19	19	11022443	11096961	Intron of CARM1(+):416bp before exon 5	Exon 4 of SMARCA4(+)		GRCh37	DUPLICATION	6	3	Protein Fusion: mid-exon  {SMARCA4:CARM1}	PRECISE	5to3	SMARCA4 (NM_003072) - CARM1 (NM_199141) rearrangement: c.452:SMARCA4_c.559-417:CARM1dup	yes	unknown	74518	24121	26866	0	3
P-0027011-T01-IM6	SOMATIC	SMARCA4	CARM1	19	19	11022910	11153127	Exon 5 of CARM1(+)	Intron of SMARCA4(+):891bp after exon 30		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {SMARCA4:CARM1}	PRECISE	5to3	SMARCA4 (NM_003072) - CARM1 (NM_199141) Rearrangement :  c.4424+891:SMARCA4_c.609:CARM1dup			130217	60797	75946	0	34
P-0066435-T01-IM7	SOMATIC	SMARCA4	LDLR	19	19	11150186	11225334	Exon 30 of SMARCA4(+)	Intron of LDLR(+):896bp after exon 10		GRCh37	DELETION	10	10	Protein Fusion: mid-exon  {SMARCA4:LDLR}	PRECISE	3to5	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.4171-1797:SMARCA4_c.1586+896:LDLRdel	yes	unknown	75148	9032	8338	0	10
P-0019776-T01-IM6	SOMATIC	SMARCA4	CARM1	19	19	11031264	11096611	Intron of CARM1(+):15bp after exon 11	Intron of SMARCA4(+):253bp before exon 4		GRCh37	DUPLICATION			Protein Fusion: out of frame  {SMARCA4:CARM1}	PRECISE	5to3	SMARCA4 (NM_003072) - CARM1 (NM_199141) rearrangement: c.356-254:SMARCA4_c.1334+15:CARM1dup			65347	13348	14936	0	9
P-0008334-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11165486	11169536	Intron of SMARCA4(+): 3Kb before exon 29	Exon 30 of SMARCA4(+)		GRCh37	INVERSION	22	11	SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement : c.4425-3445_4606inv	yes	unknown	4050	4407	4316	0	11
P-0039805-T01-IM6	SOMATIC	SMARCA4	LOC101928804	19	19	11137099	55276048	Intron of SMARCA4(+):77bp after exon 23	IGR: 5Kb before LOC101928804(-)		GRCh37	INVERSION	10	33	SMARCA4-intragenic	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: c.3215+77:SMARCA4_chr19:g.55276048inv	yes	unknown	44138949	1109014	1026394	0	34
P-0046289-T01-IM6	SOMATIC	SMARCA4	ZIC4	19	3	11094870	147002061	Exon 2 of SMARCA4(+)	IGR: 102Kb before ZIC4(-)		GRCh37	TRANSLOCATION	10	68	SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: t(3;19)(q24;p13.2)(chr3:g.147002061::chr19:g.11094870)	yes	unknown	0	0	0	0	97
P-0052366-T02-IM6	SOMATIC	SMARCA4	YJU2B	19	19	11169080	13658770	Intron of SMARCA4(+):41bp after exon 31	IGR: 200Kb before CCDC130(+)		GRCh37	DELETION	0	14	SMARCA4-intragenic	IMPPRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.4533+41:SMARCA4_chr19:g.13658770del	yes	unknown	2489690	23010	14748	0	14
P-0061969-T03-IM7	SOMATIC	SMARCA4	LUZP2	19	11	11118901	25191479	Intron of SMARCA4(+):202bp after exon 14	IGR: 673Kb before LUZP2(+)		GRCh37	TRANSLOCATION	10	16	SMARCA4-intragenic	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: t(11;19)(p14.3;p13.2)(chr11:g.25191479::chr19:g.11118901)	yes	unknown	0	0	0	0	16
P-0025573-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11092136	11098306	5-UTR of SMARCA4(+):3Kb before coding start	Intron of SMARCA4(+):35bp before exon 6		GRCh37	INVERSION	10	53	SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: c.-31-2661_c.860-36inv	yes	unknown	6170	12248	15199	0	84
P-0044246-T01-IM6	SOMATIC	SMARCA4	LINC01782	19	19	11105689	32708379	Intron of SMARCA4(+):12bp after exon 9	IGR: 115Kb before LOC101927411(-)		GRCh37	DELETION	10	147	SMARCA4-intragenic	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.1593+12:SMARCA4_chr19:g.32708379del	yes	unknown	21602690	340810	458251	0	416
P-0069956-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11101791	11106030	Intron of SMARCA4(+):34bp before exon 8	Intron of SMARCA4(+):353bp after exon 9		GRCh37	INVERSION	5	6	SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: c.1246-35_c.1593+353inv	yes	unknown	4239	2510	5056	0	6
P-0080705-T02-IM7	SOMATIC	SMARCA4		19	19	11056736	11144770	IGR: 15Kb before SMARCA4(+)	Intron of SMARCA4(+):28bp before exon 28		GRCh37	INVERSION			SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: c.3874-29:SMARCA4_chr19:g.11056736inv			88034	40874	27445	0	16
P-0014860-T01-IM6	SOMATIC	SMARCA4		19	4	11121062	118193638	Exon 14 of SMARCA4(+)	IGR: 189Kb before TRAM1L1(-)		GRCh37	TRANSLOCATION			SMARCA4-intragenic	PRECISE	5to5	SMARCA4 (NM_003072) rearrangement: t(4;19)(q26;p13.2)(chr4:g.118193638::chr19:g.11121062)			0	0	0	0	30
P-0022049-T01-IM6	SOMATIC	SMARCA4		19	19	6645388	11144538	IGR: 18Kb before TNFSF14(-)	Exon 27 of SMARCA4(+)		GRCh37	INVERSION			SMARCA4-intragenic	PRECISE	3to3	SMARCA4 (NM_003072) rearrangement: g.6645388_c.3870inv			4499150	221252	249622	0	93
P-0048489-T01-IM6	SOMATIC	SMARCA4		19	19	10922887	11169307	Intron of DNM2(+):52bp before exon 14	Intron of SMARCA4(+):156bp before exon 32		GRCh37	INVERSION			SMARCA4-intragenic	IMPPRECISE	5to5	SMARCA4 (NM_003072) rearrangement: c.4534-157:SMARCA4_chr19:g.10922887inv			246420	94256	123904	0	12
P-0044418-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	4645778	11096798	5-UTR of TNFAIP8L1(+):6Kb before coding start	Intron of SMARCA4(+):66bp before exon 4		GRCh37	DELETION	10	57	Transcript Fusion {TNFAIP8L1:SMARCA4}	PRECISE	3to5	SMARCA4 (NM_003072) rearrangement: c.356-67:SMARCA4_chr19:g.4645778del	yes	unknown	6451020	259837	342082	0	61
P-0023477-T01-IM6	SOMATIC	SMARCB1	SEZ6L	22	22	24167456	26677149	Exon 7 of SMARCB1(+)	Intron of SEZ6L(+):11Kb before exon 2		GRCh37	DELETION	10	30	Protein Fusion: mid-exon  {SMARCB1:SEZ6L}	PRECISE	3to5	SMARCB1 (NM_003073) - SEZ6L (NM_021115) rearrangement: c.840:SMARCB1_c.95-11223:SEZ6Ldel	yes	unknown	2509693	23413	39987	0	34
P-0076542-T01-IM7	SOMATIC	SMARCB1	BPIFC	22	22	24143075	32832420	Intron of SMARCB1(+):55bp before exon 4	Intron of BPIFC(-):553bp before exon 8		GRCh37	INVERSION	10	8	Protein Fusion: out of frame  {SMARCB1:BPIFC}	PRECISE	3to3	SMARCB1 (NM_003073) - BPIFC (NM_174932) rearrangement: c.363-56:SMARCB1_c.748-553:BPIFCinv	yes	unknown	8689345	163432	355533	0	11
P-0040725-T01-IM6	SOMATIC	SMARCB1	FLJ43879	22	2	24133878	239860155	Intron of SMARCB1(+):64bp before exon 2	IGR: 19Kb before FLJ43879(-)		GRCh37	TRANSLOCATION	8	9	SMARCB1-intragenic	PRECISE	5to3	SMARCB1 (NM_003073) rearrangement: t(2;22)(q37.3;q11.23)(chr2:g.239860155::chr22:g.24133878)	yes	unknown	0	0	0	0	9
P-0071114-T01-IM7	SOMATIC	SMARCB1	APOL2	22	22	24133897	36607362	Intron of SMARCB1(+):45bp before exon 2	IGR: 15Kb before APOL2(-)		GRCh37	DELETION	10	11	SMARCB1-intragenic	PRECISE	3to5	SMARCB1 (NM_003073) rearrangement: c.94-46:SMARCB1_chr22:g.36607362del	yes	unknown	12473465	68505	390458	0	12
P-0060320-T02-IM7	SOMATIC	SMARCB1		22	22	24051328	24145702	3-UTR of GUSBP11(-):8Kb after coding stop	Intron of SMARCB1(+):93bp after exon 5		GRCh37	INVERSION			SMARCB1-intragenic	IMPPRECISE	3to3	SMARCB1 (NM_003073) rearrangement: c.628+93:SMARCB1_chr22:g.24051328inv			94374	13478	15161	0	6
P-0069404-T01-IM7	SOMATIC	SMARCB1		22	22	24130028	43062225	Intron of SMARCB1(+):579bp after exon 1	IGR: 26Kb before A4GALT(-)		GRCh37	DUPLICATION			SMARCB1-intragenic	PRECISE	5to3	SMARCB1 (NM_003073) rearrangement: c.93+579:SMARCB1_chr22:g.43062225dup			18932197	211677	248258	0	4
P-0014509-T01-IM6	SOMATIC	SMARCB1		22	22	20196291	24167458	IGR: 231bp after LOC150197(+)	Exon 7 of SMARCB1(+)		GRCh37	INVERSION			SMARCB1-intragenic	PRECISE	5to5	SMARCB1 (NM_003073) rearrangement: chr22:g.20196291_c.842:SMARCB1inv			3971167	41309	43606	0	16
P-0006225-T01-IM5	SOMATIC	SMARCD1	SMARCD1	12	12	50482479	50483869	Intron of SMARCD1(+): 59bp after exon 6	Intron of SMARCD1(+): 101bp after exon 7		GRCh37	DELETION	39	38	Deletion of 1 exon: in frame	PRECISE	3to5	SMARCD1 (NM_003076) rearrangement: c.771+59_c.873+101del	yes	unknown	1390	2045	2265	0	37
P-0063673-T01-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50479405	50481135	Intron of SMARCD1(+):76bp after exon 1	Intron of SMARCD1(+):10bp before exon 5		GRCh37	DELETION	10	15	Deletion of 3 exons : in frame	PRECISE	3to5	SMARCD1 (NM_003076) rearrangement: c.177+76_c.532-11del	yes	unknown	1730	4840	5105	0	16
P-0023599-T01-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	50483319	50484120	Intron of SMARCD1(+):347bp before exon 7	Exon 8 of SMARCD1(+)		GRCh37	DELETION	0	13	Deletion within transcript : mid-exon	IMPPRECISE	3to5	SMARCD1 (NM_003076) Rearrangement : c.772-348_c.970del	yes	unknown	801	2878	1954	0	18
P-0046827-T02-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	46300876	50479356	3-UTR of ARID2(+):177Kb after coding stop	Intron of SMARCD1(+):27bp after exon 1		GRCh37	INVERSION	10	150	SMARCD1-intragenic	PRECISE	3to3	SMARCD1 (NM_003076) rearrangement: c.177+27:SMARCD1_chr12:g.46300876inv	yes	unknown	4178480	239541	358162	0	150
P-0027041-T02-IM6	SOMATIC	SMARCD1	NAB1	12	2	50483942	191478633	Intron of SMARCD1(+):81bp before exon 8	IGR: 35Kb before NAB1(+)		GRCh37	TRANSLOCATION	10	57	SMARCD1-intragenic	PRECISE	5to3	SMARCD1 (NM_003076) rearrangement: t(2;12)(q32.2;q13.12)(chr2:g.191478633::chr12:g.50483942)	yes	unknown	0	0	0	0	57
P-0059913-T01-IM7	SOMATIC	SMARCD1	HOXC13-AS	12	12	50484117	54293971	Exon 8 of SMARCD1(+)	IGR: 35Kb before HOXC13-AS(-)		GRCh37	INVERSION	7	3	SMARCD1-intragenic	PRECISE	5to5	SMARCD1 (NM_003076) rearrangement: c.967:SMARCD1_chr12:g.54293971inv	yes	unknown	3809854	35099	24065	0	3
P-0077786-T01-IM7	SOMATIC	SMARCD1	LETMD1	12	12	50488130	51441881	Intron of SMARCD1(+):89bp before exon 10	Promoter of LETMD1(+):200bp from tx start		GRCh37	INVERSION	6	5	SMARCD1-intragenic	PRECISE	5to5	SMARCD1 (NM_003076) rearrangement: c.1134-90:SMARCD1_chr12:g.51441881inv	yes	unknown	953751	8090	17596	0	5
P-0067582-T02-IM7	SOMATIC	SMARCD1	TMPRSS12	12	12	50490571	51229534	Intron of SMARCD1(+):61bp before exon 11	IGR: 7Kb before TMPRSS12(+)		GRCh37	DELETION	10	13	SMARCD1-intragenic	PRECISE	3to5	SMARCD1 (NM_003076) rearrangement: c.1270-62:SMARCD1_chr12:g.51229534del	yes	unknown	738963	6099	10310	0	13
P-0069804-T01-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50372367	50482535	Promoter of AQP6(+):6Kb from tx start	Intron of SMARCD1(+):115bp after exon 6		GRCh37	DUPLICATION	10	21	Transcript Fusion {SMARCD1:AQP6}	PRECISE	5to3	SMARCD1 (NM_003076) rearrangement: c.771+115:SMARCD1_chr12:g.50372367dup	yes	unknown	110168	6925	18427	0	21
P-0072775-T01-IM7	SOMATIC	SMARCD1		12	12	49762094	50488017	5-UTR of SPATS2(+):93Kb before coding start	Intron of SMARCD1(+):202bp before exon 10		GRCh37	DELETION			Transcript Fusion {SPATS2:SMARCD1}	PRECISE	3to5	SMARCD1 (NM_003076) rearrangement: c.1134-203:SMARCD1_chr12:g.49762094del			725923	14024	29591	0	10
P-0053667-T01-IM6	SOMATIC	SMARCD2	CD79B	17	17	61915279	62009532	Intron of SMARCD2(-):294bp before exon 2	Intron of CD79B(-):22bp after exon 1		GRCh37	DUPLICATION	7	3	Protein Fusion: out of frame  {SMARCD2:CD79B}	PRECISE	5to3	SMARCD2 (NM_001098426) - CD79B (NM_001039933) rearrangement: c.217-294:SMARCD2_c.67+23:CD79Bdup	yes	unknown	94253	9936	10630	0	3
P-0068038-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	17	38792722	38794095	Exon 6 of SMARCE1(-)	Intron of SMARCE1(-):271bp before exon 5		GRCh37	INVERSION	10	21	Antisense Fusion	PRECISE	5to5	SMARCE1 (NM_003079) rearrangement: c.157-271_c.294inv	yes	unknown	1373	2175	4612	0	25
P-0075137-T01-IM7	SOMATIC	SMARCE1	NLGN1	17	3	38793653	173829430	Intron of SMARCE1(-):90bp after exon 5	Intron of NLGN1(+):164Kb before exon 5		GRCh37	TRANSLOCATION	10	26	Antisense Fusion	PRECISE	5to3	SMARCE1 (NM_003079) rearrangement: t(3;17)(q26.31;q21.2)(chr3:g.173829430::chr17:g.38793653)	yes	unknown	0	0	0	0	26
P-0070625-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	17	38787890	38797534	Exon 9 of SMARCE1(-)	Intron of SMARCE1(-):1Kb after exon 4		GRCh37	DELETION	10	14	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCE1 (NM_003079)  rearrangement: c.156+1173_c.770del	yes	unknown	9644	3725	2180	0	14
P-0074580-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	17	38798780	38801995	Exon 4 of SMARCE1(-)	Intron of SMARCE1(-):52bp after exon 2		GRCh37	DELETION	10	59	Deletion within transcript : mid-exon	PRECISE	3to5	SMARCE1 (NM_003079) rearrangement: c.83_c.7+53del	yes	unknown	3215	1001	1351	0	68
P-0072574-T01-IM7	SOMATIC	SMARCE1		17	17	38785245	38786966	Exon 11 of SMARCE1(-)	Exon 10 of SMARCE1(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	SMARCE1 (NM_003079) rearrangement: c.1027_c.1028del			1721	756	922	0	16
P-0077947-T01-IM7	SOMATIC	SMARCE1	KIAA0556	17	16	38786928	27709847	Intron of SMARCE1(-):37bp after exon 10	Intron of KIAA0556(+):26bp after exon 9		GRCh37	TRANSLOCATION	10	31	Protein Fusion: out of frame  {SMARCE1:KIAA0556}	PRECISE	5to5	SMARCE1 (NM_003079) rearrangement: t(16;17)(p12.1;q21.2)(chr16:g.27709847::chr17:g.38786928)	yes	unknown	0	0	0	0	38
P-0079651-T01-IM7	SOMATIC	SMARCE1	LINC00838	17	10	38786972	34176316	Exon 10 of SMARCE1(-)	IGR: 128Kb before LINC00838(-)		GRCh37	TRANSLOCATION	10	77	SMARCE1-intragenic	PRECISE	5to3	SMARCE1 (NM_003079) rearrangement: t(10;17)(q21.2;q21.2)(chr10:g.34176316::chr17:g.34176316)	yes	unknown	0	0	0	0	82
P-0039478-T01-IM6	SOMATIC	SMIM19	FGFR1								GRCh37				SMIM19-FGFR1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SMIM19-FGFR1 fusion. Note: The rearrangement is a fusion between genes SMIM19 Exon1 (NM_138436) and FGFR1 Exon7 (NM_015850).	yes	unknown					
P-0004996-T02-IM5	SOMATIC	SMO	MKRN1	7	7	128845246	140164005	Exon 3 of SMO(+)	Intron of MKRN1(-): 4Kb before exon 3		GRCh37	DELETION	17	12	Antisense fusion	PRECISE	3to5	SMO (NM_005631) - MKRN1 (NM_013446) rearrangement : c.740:SMO_c.315-4269:MKRN1del	yes	unknown	11318759	45508	44672	0	11
P-0017421-T01-IM6	SOMATIC	SMO		7	7	128845599	128849256	Exon 4 of SMO(+)	Intron of SMO(+):18bp after exon 8		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	SMO (NM_005631) rearrangement: c.896_c.1466+18dup			3657	4642	11517	0	15
P-0053924-T01-IM6	SOMATIC	SMURF2	FGFR2								GRCh37				SMURF2-FGFR2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SMURF2-FGFR2 fusion. Note: The rearrangement is an in-frame fusion between genes SMURF2 Exon1 (NM_022739) and FGFR2 Exon2 (NM_000141.4). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0060077-T02-IM7	SOMATIC	SMURF2	PRKCA								GRCh37				SMURF2-PRKCA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SMURF2-PRKCA fusion. Note: The rearrangement is an in-frame fusion between genes SMURF2 Exon5 (NM_022739) and PRKCA Exon3 (NM_002737). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0045460-T01-IM6	SOMATIC	SMYD3		1	1	245806197	246021906	Intron of KIF26B(+):3Kb before exon 10	Exon 10 of SMYD3(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	SMYD3 (NM_001167740) rearrangement: c.968:SMYD3_chr1:g.245806197del			215709	3495	4210	0	4
P-0048692-T01-IM6	SOMATIC	SMYD3		1	1	2301777	246490520	Intron of MORN1(-):2Kb after exon 8	Exon 5 of SMYD3(-)		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	SMYD3 (NM_001167740) rearrangement: c.514:SMYD3_chr1:g.2301777inv			244188743	1097287	1623942	0	24
P-0086223-T02-IM7	SOMATIC	SMYD3		1	1	246091381	246326095	Intron of SMYD3(-):46bp before exon 7	Intron of SMYD3(-):164Kb after exon 5		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	SMYD3 (NM_001167740) rearrangement: c.531+164408_c.600-46del			234714	1748	2715	0	37
P-0060531-T01-IM7	SOMATIC	SMYD3		1	1	246518185	246544150	Intron of SMYD3(-):147bp after exon 2	Intron of SMYD3(-):26Kb before exon 2		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	SMYD3 (NM_001167740) rearrangement: c.165-25754_c.228+148dup			25965	1035	1984	0	5
P-0063607-T01-IM7	SOMATIC	SMYD3	HHAT	1	1	210782890	246498605	Intron of HHAT(+):14Kb before exon 10	Intron of SMYD3(-):63bp after exon 3		GRCh37	INVERSION	0	6	Protein Fusion: in frame  {SMYD3:HHAT}	IMPPRECISE	5to5	SMYD3 (NM_001167740) - HHAT (NM_001122834) rearrangement: c.336+64:SMYD3_c.1246-13980:HHATinv	yes	unknown	35715715	232732	239929	0	6
P-0042121-T01-IM6	SOMATIC	SMYD3	ZNF124	1	1	246670337	247310040	Intron of SMYD3(-):18bp after exon 1	Intron of ZNF124(-):12Kb after exon 3		GRCh37	DUPLICATION	10	9	Protein Fusion: in frame  {SMYD3:ZNF124}	PRECISE	5to3	SMYD3 (NM_001167740) rearrangement: c.164+19:SMYD3_chr1:g.247310040dup	yes	unknown	639703	1751	1167	0	9
P-0060676-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	187826862	246078944	IGR: 765Kb before LINC01036(+)	Intron of SMYD3(-):2bp before exon 8		GRCh37	DELETION	10	16	SMYD3-intragenic	PRECISE	3to5	SMYD3 (NM_001167740) rearrangement: c.703-2:SMYD3_chr1:g.187826862del	yes	unknown	58252082	337353	623344	0	18
P-0073022-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	170051112	246021764	IGR: 64Kb before METTL11B(+)	Intron of SMYD3(-):33bp after exon 10		GRCh37	INVERSION	10	16	SMYD3-intragenic	PRECISE	5to5	SMYD3 (NM_001167740) rearrangement: c.1076+34:SMYD3_chr1:g.170051112inv	yes	unknown	75970652	379572	586076	0	19
P-0074824-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	246078854	246252291	Exon 8 of SMYD3(-)	Intron of SMYD3(-):159Kb before exon 6		GRCh37	INVERSION	10	17	SMYD3-intragenic	PRECISE	3to3	SMYD3 (NM_001167740) rearrangement: c.532-159052_c.791inv	yes	unknown	173437	2729	2952	0	17
P-0078086-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	245130425	246498702	3-UTR of LOC101928068(-):4Kb after coding stop	Exon 3 of SMYD3(-)		GRCh37	DELETION	10	7	SMYD3-intragenic	PRECISE	3to5	SMYD3 (NM_001167740) rearrangement: c.303:SMYD3_chr1:g.245130425del	yes	unknown	1368277	10992	16255	0	7
P-0066350-T01-IM7	SOMATIC	SNAP23	MGA	15	15	42003490	42811587	Exon 8 of MGA(+)	Intron of SNAP23(+):4Kb after exon 5		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {SNAP23:MGA}	PRECISE	5to3	SNAP23 (NM_003825) - MGA (NM_001164273) rearrangement: c.266+4035:SNAP23_c.3027:MGAdup			808097	41377	77014	0	31
P-0048950-T01-IM6	SOMATIC	SND1	BRAF	7	7	127391491	140492033	Intron of SND1(+):30Kb after exon 10	Intron of BRAF(-):2Kb after exon 8		GRCh37	INVERSION	10	99	Protein Fusion: in frame  {SND1:BRAF}	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1152+30037:SND1_c.1140+2075:BRAFinv	yes	unknown	13100542	98474	140429	0	97
P-0068194-T01-IM7	SOMATIC	SND1	BRAF	7	7	127379140	140489175	Intron of SND1(+):18Kb after exon 10	Intron of BRAF(-):2Kb before exon 9		GRCh37	INVERSION	10	14	Protein Fusion: in frame  {SND1:BRAF}	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1152+17686:SND1_c.1141-1791:BRAFinv	yes	unknown	13110035	125143	98576	0	13
P-0077083-T01-IM7	SOMATIC	SND1	BRAF	7	7	127545785	140482049	Intron of SND1(+):913bp after exon 14	Intron of BRAF(-):556bp before exon 11		GRCh37	INVERSION	10	11	Protein Fusion: in frame  {SND1:BRAF}	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1527+913:SND1_c.1315-556:BRAFinv	yes	unknown	12936264	70713	103974	0	12
P-0002197-T01-IM3	SOMATIC	SND1	BRAF	7	7	127560808	140488303	Intron of SND1(+): 8Kb before exon 15	Intron of BRAF(-): 919bp before exon 9		GRCh37	INVERSION	85	78	Protein fusion: in frame (BRAF-SND1)	PRECISE	5to5	c.1528-8436:SND1_c.1141-922:BRAFinv	yes	unknown	12927495	101078	91247	0	102
P-0009619-T01-IM5	SOMATIC	SND1	BRAF	7	7	127717136	140482494	Intron of SND1(+): 2Kb after exon 17	Intron of BRAF(-): 327bp after exon 10		GRCh37	INVERSION	52	37	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) rearrangement: c.1968+2394:SND1_ c.1314+327:BRAFinv	yes	unknown	12765358	85031	84979	0	35
P-0007533-T01-IM5	SOMATIC	SND1	BRAF	7	7	127393192	140482226	Intron of SND1(+): 32Kb after exon 10	Intron of BRAF(-): 595bp after exon 10		GRCh37	INVERSION	102	102	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-10 with BRAF exons 11-18)  : c.1152+31738:SND1_c.1314+595:BRAFinv	yes	unknown	13089034	67415	105853	0	199
P-0008140-T01-IM5	SOMATIC	SND1	BRAF	7	7	127357492	140489439	Intron of SND1(+): 4Kb before exon 10	Intron of BRAF(-): 2Kb before exon 9		GRCh37	INVERSION	84	102	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-9 fused with BRAF exons 9-18) :  c.1039-3849:SND1_c.1141-2055:BRAFinv	yes	unknown	13131947	127953	151550	0	172
P-0004103-T01-IM5	SOMATIC	SND1	BRAF	7	7	127353500	140481685	Intron of SND1(+): 6Kb after exon 9	Intron of BRAF(-): 192bp before exon 11		GRCh37	INVERSION	27	25	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) -  BRAF (NM_004333) rearrangement: c.1038+5799:SND1_c.1315-192:BRAFinv.	yes	unknown	13128185	65280	56508	0	25
P-0001687-T01-IM3	SOMATIC	SND1	BRAF	7	7	127389835	140490224	Intron of SND1(+): 28Kb after exon 10	Intron of BRAF(-): 3Kb before exon 9		GRCh37	INVERSION	71	87	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) inversion:  c.1152+28381_c.1141-2840inv	yes	unknown	13100389	102710	105481	0	85
P-0012395-T01-IM5	SOMATIC	SND1	BRAF	7	7	127388628	140493527	Intron of SND1(+): 27Kb after exon 10	Intron of BRAF(-): 581bp after exon 8		GRCh37	INVERSION	24	14	Protein fusion: in frame (SND1-BRAF)	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) rearrangement: c.1152+27174:SND1_c.1140+581:BRAFinv	yes	unknown	13104899	154620	189356	0	13
P-0052299-T04-IM6	SOMATIC	SND1	BRAF	7	7	127350630	140482935	Intron of SND1(+):3Kb after exon 9	Exon 10 of BRAF(-)		GRCh37	INVERSION	10	82	Protein Fusion: mid-exon  {SND1:BRAF}	PRECISE	3to3	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1038+2929:SND1_c.1200:BRAFinv	yes	unknown	13132305	73859	146421	0	83
P-0052299-T04-IM6	SOMATIC	SND1	BRAF								GRCh37				SND1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SND1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SND1 Exon9 (NM_014390) and BRAF Exon10 (NM_004333). POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7)  PMID: 19117982	yes	unknown					
P-0064764-T01-IM7	SOMATIC	SND1	BRAF								GRCh37				SND1-BRAF Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SND1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SND1 Exon9 (NM_014390) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0042036-T01-IM6	SOMATIC	SND1	BRAF								GRCh37				SND1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SND1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SND1 Exon10 (NM_014390) and BRAF Exon11 (NM_004333).	yes	unknown					
P-0024554-T01-IM6	SOMATIC	SOCS1	SOCS1	16	16	11349288	11350457	Exon 2 of SOCS1(-)	Promoter of SOCS1(-):2Kb from tx start		GRCh37	INVERSION	7	3	Antisense Fusion	PRECISE	5to5	SOCS1 (NM_003745) rearrangement: c.-572_c.48inv	yes	unknown	1169	877	1022	0	3
P-0037903-T01-IM6	SOMATIC	SOCS1		16	16	11348944	11350617	Exon 2 of SOCS1(-)	Promoter of SOCS1(-):2Kb from tx start		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	SOCS1 (NM_003745) rearrangement: c.392:SOCS1_chr16:g.11350617inv			1673	1175	1820	0	2
P-0006071-T01-IM5	SOMATIC	SOCS1	SOCS1	16	16	11350036	11350841	5-UTR of SOCS1(-): 701bp before coding start	Promoter of SOCS1(-): 802bp from tx start		GRCh37	DELETION	0	49	Deletion within transcript	IMPRECISE	3to5	SOCS1 (NM_003745) rearrangment : c.-956_-151del	yes	unknown	805	1039	559	0	48
P-0051973-T01-IM6	SOMATIC	SOCS6	MAML2								GRCh37				SOCS6-MAML2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SOCS6-MAML2 fusion. Note: The rearrangement is a fusion between genes SOCS6 5'UTR (NM_004232) and MAML2 Exon2 (NM_032427). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0002997-T01-IM3	SOMATIC	SORBS2	FAT1	4	4	186650802	187522408	5-UTR of SORBS2(-): 39Kb before coding start	Intron of FAT1(-): 15bp after exon 21		GRCh37	INVERSION	37	25	Antisense fusion	PRECISE	5to5		yes	unknown	871606	14449	19315	0	25
P-0063713-T01-IM7	SOMATIC	SOS1	SOS1	4	2	26407551	39213141	Intron of RBPJ(+):245bp before exon 4	Exon 23 of SOS1(-)		GRCh37	TRANSLOCATION	10	14	Antisense Fusion	PRECISE	3to5	SOS1 (NM_005633) rearrangement: t(2;4)(p22.1;p15.2)(chr2:g.39213141::chr4:g.26407551)	yes	unknown	0	0	0	0	14
P-0076527-T01-IM7	SOMATIC	SOS1	MAP4K3	2	2	39234236	39505296	Exon 16 of SOS1(-)	Intron of MAP4K3(-):251bp after exon 24		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {SOS1:MAP4K3}	PRECISE	5to3	SOS1 (NM_005633) - MAP4K3 (NM_003618) rearrangement: c.2609:SOS1_c.1794+252:MAP4K3dup	yes	unknown	271060	17109	11903	0	8
P-0049006-T01-IM6	SOMATIC	SOS1	FBXO11	2	2	39262249	48045098	Intron of SOS1(-):103bp after exon 8	Intron of FBXO11(-):819bp after exon 16		GRCh37	DUPLICATION	10	4	Protein Fusion: out of frame  {SOS1:FBXO11}	PRECISE	5to3	SOS1 (NM_005633) - FBXO11 (NM_001190274) rearrangement: c.1074+104:SOS1_c.2006+820:FBXO11dup	yes	unknown	8782849	110558	136070	0	7
P-0069681-T01-IM7	SOMATIC	SOS1	SERPINI1	3	2	167525299	39239230	Intron of SERPINI1(+):170bp after exon 6	Intron of SOS1(-):36bp after exon 14		GRCh37	TRANSLOCATION	0	15	Protein Fusion: out of frame  {SOS1:SERPINI1}	IMPPRECISE	5to5	SOS1 (NM_005633) - SERPINI1 (NM_001122752) rearrangement: t(2;3)(p22.1;q26.1)(chr2:g.39239230::chr3:g.167525299)	yes	unknown	0	0	0	0	15
P-0063578-T01-IM7	SOMATIC	SOS1	SOS1	2	2	37665268	39278285	IGR: 94Kb before QPCT(+)	Exon 6 of SOS1(-)		GRCh37	DELETION	10	30	SOS1-intragenic	PRECISE	3to5	SOS1 (NM_005633) rearrangement: c.864:SOS1_chr2:g.37665268del	yes	unknown	1613017	36048	38366	0	31
P-0052609-T03-IM6	SOMATIC	SOS1		7	2	143641474	39239441	IGR: 9Kb before OR2F2(+)	Exon 14 of SOS1(-)		GRCh37	TRANSLOCATION			SOS1-intragenic	IMPPRECISE	5to3	SOS1 (NM_005633) rearrangement: t(2;7)(p22.1;q35)(chr2:g.39239441::chr7:g.143641474)			0	0	0	0	5
P-0005152-T01-IM5	SOMATIC	SOX17	XKR4	8	8	55371023	56152192	Intron of SOX17(+): 18bp after exon 1	Intron of XKR4(+): 118Kb before exon 2		GRCh37	DELETION	14	8	Protein fusion: out of frame (SOX17-XKR4)	PRECISE	3to5	SOX17 (NM_022454) - XKR4 (NM_052898) Rearrangement: c.307+18:SOX17_c.807-118046:XKR4del	yes	unknown	781169	5929	8616	0	8
P-0012055-T01-IM5	SOMATIC	SOX17	SOX17	8	8	55366186	55367502	IGR: 4Kb before SOX17(+)	Promoter of SOX17(+): 3Kb from tx start		GRCh37	INVERSION	45	28	SOX17-intragenic	PRECISE	3to3	SOX17 (NM_022454) rearrangement: c.-4513_c.-3197inv	yes	unknown	1316	1443	2705	0	28
P-0076182-T04-IM7	SOMATIC	SOX17		8	8	55370728	55372043	Exon 1 of SOX17(+)	Exon 2 of SOX17(+)		GRCh37	INVERSION			SOX17-intragenic	IMPPRECISE	5to5	SOX17 (NM_022454) rearrangement: c.30_c.733inv			1315	5245	7514	0	5
P-0058477-T01-IM7	SOMATIC	SOX2	LINC01206	3	3	181430765	181716431	Exon 1 of SOX2(+)	5-UTR of LINC01206(+):12Kb before coding start		GRCh37	DUPLICATION	10	17	Protein Fusion: mid-exon  {LINC01206:SOX2}	PRECISE	5to3	SOX2 (NM_003106) rearrangement: c.617:SOX2_chr3:g.181716431dup	yes	unknown	285666	5628	8146	0	17
P-0037666-T01-IM6	SOMATIC	SOX2	PIK3C2G	12	3	18665844	181430991	Intron of PIK3C2G(+):7Kb after exon 23	Exon 1 of SOX2(+)		GRCh37	TRANSLOCATION	10	36	Protein Fusion: mid-exon  {SOX2:PIK3C2G}	PRECISE	5to3	SOX2 (NM_003106) -PIK3C2G (NM_004570) rearrangement: t(3;12)(q26.33;p12.3)(chr3:g.181430991::chr12:g.18665844)	yes	unknown	0	0	0	0	37
P-0070197-T01-IM7	SOMATIC	SOX2		3	3	181430738	181439386	Exon 1 of SOX2(+)	5-UTR of SOX2-OT(+):21Kb before coding start		GRCh37	DELETION			Protein Fusion: mid-exon  {SOX2:SOX2-OT}	PRECISE	3to5	SOX2 (NM_003106) rearrangement: c.590:SOX2_chr3:g.181439386del			8648	4616	6682	0	28
P-0005353-T01-IM5	SOMATIC	SOX2	SOX2OT	3	3	181430417	181432493	Exon 1 of SOX2(+)	5-UTR of SOX2OT(+): 27Kb before coding start		GRCh37	DELETION	72	31	Protein fusion: mid-exon (SOX2-SOX2OT)	PRECISE	3to5	SOX2 (NM_003106) rearrangement: c.269_chr3:g.181432493del	yes	unknown	2076	4704	3560	0	27
P-0010172-T01-IM5	SOMATIC	SOX2		3	3	181430988	181432224	Exon 1 of SOX2(+)	5-UTR of SOX2OT(+): 27Kb before coding start		GRCh37	DELETION			Protein fusion: mid-exon (SOX2-SOX2OT)	IMPRECISE	3to5	SOX2 (NM_003106) rearrangement: c.840_c.*1122del			1236	451	785	0	12
P-0035533-T01-IM6	SOMATIC	SOX9		17	17	58643537	70119231	5-UTR of LOC388406(+):20Kb before coding start	Intron of SOX9(+):118bp after exon 2		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	SOX9 (NM_000346) rearrangement: c.685+118:SOX9_chr17:g.58643537inv			11475694	91347	211643	0	14
P-0049524-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70118988	70120367	Exon 2 of SOX9(+)	Exon 3 of SOX9(+)		GRCh37	DELETION	10	49	Deletion within transcript : mid-exon	PRECISE	3to5	SOX9 (NM_000346) rearrangement: c.560_c.1369del	yes	unknown	1379	4844	3817	0	51
P-0066073-T01-IM7	SOMATIC	SOX9	SOX9	17	17	70119236	70120468	Intron of SOX9(+):123bp after exon 2	Exon 3 of SOX9(+)		GRCh37	DELETION	10	13	Deletion within transcript : mid-exon	PRECISE	3to5	SOX9 (NM_000346) rearrangement: c.685+123_c.1470del	yes	unknown	1232	4812	5830	0	13
P-0013704-T01-IM5	SOMATIC	SOX9	SOX9	17	17	70119369	70120475	Intron of SOX9(+): 256bp after exon 2	Exon 3 of SOX9(+)		GRCh37	DUPLICATION	63	70	Duplication within transcript: mid-exon	PRECISE	5to3	SOX9 (NM_000346) rearrangement: c.685+256_c.1477dup	yes	unknown	1106	6716	7051	0	69
P-0017760-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70120198	70140019	Exon 3 of SOX9(+)	IGR: 23Kb before SOX9(+)		GRCh37	DELETION	10	15	SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) Rearrangement : c.1200_chr17:g.70140019del	yes	unknown	19821	5806	3882	0	15
P-0006023-T02-IM5	SOMATIC	SOX9	SOX9	17	17	70119010	70121927	Exon 2 of SOX9(+)	3-UTR of SOX9(+): 1Kb after coding stop		GRCh37	DELETION	66	41	SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) rearrangement: c.582_c.*1399del	yes	unknown	2917	7197	5837	0	41
P-0033856-T01-IM6	SOMATIC	SOX9	LINC00673	17	17	70120494	70485069	Exon 3 of SOX9(+)	3-UTR of LINC00673(-):104Kb after coding stop		GRCh37	DELETION	8	5	SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) rearrangement: c.1496:SOX9_chr17:g.70485069del	yes	unknown	364575	2486	4652	0	5
P-0044656-T01-IM6	SOMATIC	SOX9	LINC00673	17	17	70117898	70359850	Exon 1 of SOX9(+)	IGR: 40Kb before LINC00673(-)		GRCh37	INVERSION	9	2	SOX9-intragenic	PRECISE	3to3	SOX9 (NM_000346) rearrangement: c.366:SOX9_chr17:g.70359850inv	yes	unknown	241952	12203	15276	0	2
P-0076447-T01-IM7	SOMATIC	SOX9	SOX9	17	17	70119932	70121114	Exon 3 of SOX9(+)	3-UTR of SOX9(+):4Kb after coding stop		GRCh37	DELETION	0	67	SOX9-intragenic	IMPPRECISE	3to5	SOX9 (NM_000346) rearrangement: c.934:SOX9_chr17:g.70121114del	yes	unknown	1182	3867	1853	0	74
P-0004918-T01-IM5	SOMATIC	SOX9		17	17	70120231	78453501	Exon 3 of SOX9(+)	IGR: 3Kb after NPTX1(-)		GRCh37	INVERSION			SOX9-intragenic	PRECISE	5to5	SOX9(NM_000346) Rearrangement : c.1233:SOX9_chr17:g.78453501inv			8333270	10625	17793	0	8
P-0010084-T01-IM5	SOMATIC	SOX9		17	17	35352875	70122378	Intron of AATF(+): 5Kb after exon 8	3-UTR of SOX9(+): 2Kb after coding stop		GRCh37	DELETION			SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) rearrangement: chr17:g. 35352875_c.*1850:SOX9del			34769503	427378	591540	0	17
P-0012223-T02-IM6	SOMATIC	SOX9		17	17	69532781	70120449	IGR: 439Kb before CASC17(-)	Exon 3 of SOX9(+)		GRCh37	DELETION			SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) rearrangement: chr17:g.69532781_c.1451del			587668	11766	23049	0	110
P-0018416-T01-IM6	SOMATIC	SOX9		17	17	69803812	70119786	IGR: 214Kb before LOC102723505(-)	Exon 3 of SOX9(+)		GRCh37	DELETION			SOX9-intragenic	PRECISE	3to5	SOX9 (NM_000346) rearrangement: chr17:g.69803812_c.788del			315974	8421	10189	0	68
P-0049316-T01-IM7	SOMATIC	SOX9		17	3	70120416	145723784	Exon 3 of SOX9(+)	IGR: 63Kb before PLOD2(-)		GRCh37	TRANSLOCATION			SOX9-intragenic	PRECISE	5to3	SOX9 (NM_000346) rearrangement: t(3;17)(q24;q24.3)(chr3:g.145723784::chr17:g.70120416)			0	0	0	0	47
P-0046624-T01-IM6	SOMATIC	SPATA2L	FANCA	16	16	89765309	89869723	Intron of SPATA2L(-):596bp before exon 3	Exon 8 of FANCA(-)		GRCh37	DUPLICATION	10	12	Protein Fusion: mid-exon  {SPATA2L:FANCA}	PRECISE	5to3	SPATA2L (NM_152339) - FANCA (NM_000135) rearrangement: c.304-596:SPATA2L_c.736:FANCAdup	yes	unknown	104414	61572	59956	0	21
P-0026614-T01-IM6	SOMATIC	SPECC1L	RET	22	10	24740413	43611575	Intron of SPECC1L(+):3Kb before exon 11	Intron of RET(+):456bp before exon 12		GRCh37	TRANSLOCATION	10	116	Protein Fusion: in frame  {SPECC1L:RET}	PRECISE	3to5	SPECC1L (NM_001145468) - RET (NM_020975) fusion (SPECC1L exons 1-10 fused to RET exons 12-20): t(10;22)(10q11.21;22q11.23)(chr10:g.43611575::chr22:g.24740413)	yes	unknown	0	0	0	0	133
P-0026614-T01-IM6	SOMATIC	SPECC1L	RET								GRCh37				SPECC1L-RET Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: SPECC1L-RET fusion. Note: The rearrangement is an in-frame fusion between genes SPECC1L Exon9 (NM_001145468) and RET Exon12 (NM_020975).	yes	unknown					
P-0035267-T01-IM6	SOMATIC	SPEN	LCK	1	1	16257959	32731249	Exon 11 of SPEN(+)	5-UTR of LCK(+):9Kb before coding start		GRCh37	INVERSION	10	75	Antisense Fusion	PRECISE	3to3	SPEN (NM_015001) rearrangement: c.5224_chr1:g.32731249inv	yes	unknown	16473290	170792	154869	0	75
P-0040055-T01-IM6	SOMATIC	SPEN	ZBTB17	1	1	16263688	16281610	Exon 12 of SPEN(+)	5-UTR of ZBTB17(-):13Kb before coding start		GRCh37	DELETION	10	6	Antisense Fusion	PRECISE	3to5	SPEN (NM_015001) rearrangement: c.10057:SPEN_chr1:g.16281610del	yes	unknown	17922	7003	10940	0	9
P-0034603-T01-IM6	SOMATIC	SPEN	SPEN	1	1	15589791	16260698	Intron of FHAD1(+):9Kb before exon 3	Exon 11 of SPEN(+)		GRCh37	INVERSION	6	5	Antisense Fusion	PRECISE	3to3	SPEN (NM_015001) rearrangement: c.7963:SPEN_chr1:g.15589791inv	yes	unknown	670907	51076	67844	0	4
P-0057493-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16198146	16200647	Intron of SPEN(+):1Kb before exon 2	Intron of SPEN(+):1Kb after exon 2		GRCh37	DELETION	6	3	Deletion of 1 exon : in frame	PRECISE	3to5	SPEN (NM_015001) rearrangement: c.84-1165_c.404+1016del	yes	unknown	2501	3144	1939	0	3
P-0036333-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16173769	16174570	Promoter of SPEN(+):589bp from tx start	Exon 1 of SPEN(+)		GRCh37	DELETION	0	9	Deletion within transcript : mid-exon	IMPPRECISE	3to5	SPEN (NM_015001) Rearrangement : c.-794_c.8del	yes	unknown	801	125	90	0	9
P-0001664-T01-IM3	SOMATIC	SPEN	SPEN	1	1	16202161	16202892	Intron of SPEN(+): 536bp before exon 3	Exon 3 of SPEN(+)		GRCh37	DELETION	60	18	Deletion within transcript: mid-exon	PRECISE	3to5	SPEN (NM_015001) intragenic deletion: c.405-536_c.600del	yes	unknown	731	2696	1841	0	62
P-0012605-T02-IM7	SOMATIC	SPEN	CAPZB	1	1	16262468	19785520	Exon 11 of SPEN(+)	Intron of CAPZB(-):25Kb after exon 1		GRCh37	INVERSION	10	21	Protein Fusion: mid-exon  {SPEN:CAPZB}	PRECISE	3to3	SPEN (NM_015001) - CAPZB (NM_001206540) rearrangement: c.9733:SPEN_c.3+26410:CAPZBinv	yes	unknown	3523052	55509	54108	0	21
P-0033800-T01-IM6	SOMATIC	SPEN	DDI2	1	1	15966805	16255727	Intron of DDI2(+):2Kb after exon 5	Exon 11 of SPEN(+)		GRCh37	DUPLICATION	10	5	Protein Fusion: mid-exon  {SPEN:DDI2}	PRECISE	5to3	SPEN (NM_015001) - DDI2 (NM_032341) rearrangement: c.2992:SPEN_c.760+1876:DDI2dup	yes	unknown	288922	20661	27565	0	6
P-0060134-T01-IM7	SOMATIC	SPEN	IL23R	1	1	16203146	67680474	Exon 3 of SPEN(+)	Intron of IL23R(+):5Kb before exon 7		GRCh37	DELETION	10	10	Protein Fusion: mid-exon  {SPEN:IL23R}	PRECISE	3to5	SPEN (NM_015001) - IL23R (NM_144701) rearrangement: c.854:SPEN_c.799-4783:IL23Rdel	yes	unknown	51477328	740070	883057	0	12
P-0049927-T01-IM6	SOMATIC	SPEN	RSC1A1	1	1	15987862	16254650	Exon 1 of RSC1A1(+)	Exon 11 of SPEN(+)		GRCh37	DUPLICATION	10	49	Protein Fusion: mid-exon  {SPEN:RSC1A1}	PRECISE	5to3	SPEN (NM_015001) - RSC1A1 (NM_006511) rearrangement: c.1915:SPEN_c.1499:RSC1A1dup	yes	unknown	266788	18459	29131	0	50
P-0019022-T02-IM6	SOMATIC	SPEN	ZCCHC11	1	1	16202966	52985135	Exon 3 of SPEN(+)	Intron of ZCCHC11(-):3Kb before exon 3		GRCh37	INVERSION			Protein Fusion: mid-exon  {SPEN:ZCCHC11}	PRECISE	3to3	SPEN (NM_015001) - ZCCHC11 (NM_001009881) rearrangement : c.674:SPEN_c.719-3409:ZCCHC11inv			36782169	474661	530868	0	2
P-0002707-T01-IM3	SOMATIC	SPEN	USP48	1	1	16256478	22013292	Exon 11 of SPEN(+)	Intron of USP48(-): 392bp after exon 25		GRCh37	INVERSION	25	29	Protein fusion: mid-exon (SPEN-USP48)	PRECISE	3to3		yes	unknown	5756814	79004	61147	0	29
P-0075282-T01-IM7	SOMATIC	SPEN	KAZN	1	1	15097166	16265189	Intron of KAZN(+):171Kb after exon 1	Intron of SPEN(+):23bp before exon 14		GRCh37	DUPLICATION	10	19	Protein Fusion: out of frame  {SPEN:KAZN}	PRECISE	5to3	SPEN (NM_015001) - KAZN (NM_201628) rearrangement: c.10705-24:SPEN_c.226+171447:KAZNdup	yes	unknown	1168023	63388	126070	0	19
P-0057856-T02-IM6	SOMATIC	SPEN	SPEN	1	1	10958462	16258482	IGR: 48Kb before C1orf127(-)	Exon 11 of SPEN(+)		GRCh37	INVERSION	10	13	SPEN-intragenic	PRECISE	5to5	SPEN (NM_015001) rearrangement: c.5747:SPEN_chr1:g.10958462inv	yes	unknown	5300020	126502	182160	0	14
P-0037674-T01-IM6	SOMATIC	SPEN	SPEN	1	1	5804200	16259285	IGR: 119Kb before MIR4689(-)	Exon 11 of SPEN(+)		GRCh37	INVERSION	10	13	SPEN-intragenic	PRECISE	3to3	SPEN (NM_015001) rearrangement: c.6550:SPEN_chr1:g.5804200inv	yes	unknown	10455085	129343	210318	0	13
P-0013526-T01-IM5	SOMATIC	SPEN		1	1	16259669	16477281	Exon 11 of SPEN(+)	Intron of EPHA2(-): 110bp after exon 2		GRCh37	DUPLICATION			SPEN-intragenic	PRECISE	5to3	SPEN (NM_015001) Rearrangement : c.6934:SPEN_c.153+110:EPHA2			217612	29954	32294	0	12
P-0031490-T01-IM6	SOMATIC	SPEN		1	1	15748399	16258467	Intron of EFHD2(+):4Kb before exon 2	Exon 11 of SPEN(+)		GRCh37	INVERSION			SPEN-intragenic	PRECISE	5to5	SPEN (NM_015001) Rearrangement: c.5732:SPEN_chr1:g.15748399inv			510068	37113	44454	0	61
P-0002707-T01-IM3	SOMATIC	SPEN	ZBTB40	1	1	16254600	22804072	Exon 11 of SPEN(+)	5-UTR of ZBTB40(+): 12Kb before coding start		GRCh37	INVERSION	25	37	ZBTB40-SPEN fusion	PRECISE	5to5		yes	unknown	6549472	93218	73228	0	26
P-0042066-T03-IM7	SOMATIC	SPNS2	RPTOR	17	17	4415679	78811600	Intron of SPNS2(+):862bp before exon 2	Intron of RPTOR(+):121bp before exon 10		GRCh37	DELETION	5	7	Protein Fusion: out of frame  {SPNS2:RPTOR}	PRECISE	3to5	SPNS2 (NM_001124758) - RPTOR (NM_020761) rearrangement: c.371-863:SPNS2_c.1137-122:RPTORdel	yes	unknown	74395921	931747	1112338	0	7
P-0029981-T01-IM6	SOMATIC	SPOCK1	BRAF								GRCh37				SPOCK1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SPOCK1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes SPOCK1 Exon6 (NM_004598) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0077775-T01-IM7	SOMATIC	SPOP	SPAG9	17	17	47699445	49149059	Intron of SPOP(-):16bp before exon 3	Intron of SPAG9(-):8Kb after exon 2		GRCh37	DUPLICATION	10	25	Protein Fusion: out of frame  {SPOP:SPAG9}	PRECISE	5to3	SPOP (NM_001007228) - SPAG9 (NM_001130528) rearrangement: c.79-16:SPOP_c.424+7886:SPAG9dup	yes	unknown	1449614	9452	26703	3	22
P-0065499-T02-IM7	SOMATIC	SPOP	SPOP	17	17	47693932	47696389	Intron of SPOP(-):2Kb after exon 5	Exon 5 of SPOP(-)		GRCh37	INVERSION	10	38	SPOP-intragenic	PRECISE	3to3	SPOP (NM_001007228) rearrangement: c.434_c.480+2411inv	yes	unknown	2457	436	1029	0	37
P-0016912-T01-IM6	SOMATIC	SPOP		17	17	47502627	47688854	IGR: 21Kb before PHB(-)	Intron of SPOP(-):35bp before exon 6		GRCh37	INVERSION			SPOP-intragenic	PRECISE	3to3	SPOP (NM_001007228) rearrangement: g.47502627_c.481-35:SPOPinv			186227	4789	9471	0	11
P-0085617-T01-IM7	SOMATIC	SPOP	MSI2	17	17	47684772	55639886	Intron of SPOP(-):38bp before exon 8	Intron of MSI2(+):33Kb after exon 7		GRCh37	DELETION			SPOP-MSI2 Fusion	PRECISE	3to5	SPOP (NM_001007228) - MSI2 (NM_138962) rearrangement: c.715-38:SPOP_c.454+32801:MSI2del			7955114	40376	53365	0	7
P-0041882-T01-IM6	SOMATIC	SPPL2B	DOT1L	19	19	2227932	2346308	Intron of DOT1L(+):806bp after exon 27	Intron of SPPL2B(+):980bp after exon 13		GRCh37	DUPLICATION	10	6	Protein Fusion: in frame  {SPPL2B:DOT1L}	PRECISE	5to3	SPPL2B (NM_152988) - DOT1L (NM_032482) rearrangement: c.1353+980:SPPL2B_c.4606+806:DOT1Ldup	yes	unknown	118376	6062	6959	0	6
P-0083073-T01-IM7	SOMATIC	SPRED1		15	15	38595368	38616946	Intron of SPRED1(+):4Kb after exon 2	Intron of SPRED1(+):17bp before exon 4		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	SPRED1 (NM_152594) rearrangement: c.207+3620_c.377-18del			21578	668	1124	0	13
P-0056867-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	38621898	38641730	Intron of SPRED1(+):5Kb after exon 4	Intron of SPRED1(+):6bp after exon 6		GRCh37	DUPLICATION	10	57	Duplication of 2 exons : in frame	PRECISE	5to3	SPRED1 (NM_152594) rearrangement: c.423+4888_c.684+6dup	yes	unknown	19832	2390	2779	0	60
P-0069028-T01-IM7	SOMATIC	SPRED1	SPRED1	15	15	36132467	38631851	5-UTR of DPH6-AS1(+):19Kb before coding start	Intron of SPRED1(+):86bp before exon 5		GRCh37	DELETION	10	29	Transcript Fusion {DPH6-AS1:SPRED1}	PRECISE	3to5	SPRED1 (NM_152594) rearrangement: c.424-87:SPRED1_chr15:g.36132467del	yes	unknown	2499384	9974	10532	0	32
P-0040601-T01-IM6	SOMATIC	SPRYD3	KMT2D	12	12	49422643	53461041	Exon 45 of KMT2D(-)	Intron of SPRYD3(-):390bp after exon 8		GRCh37	DELETION	10	37	Protein Fusion: mid-exon  {SPRYD3:KMT2D}	PRECISE	3to5	SPRYD3 (NM_032840) - KMT2D (NM_003482) rearrangement: c.901+391:SPRYD3_c.14350:KMT2Ddel	yes	unknown	4038398	152495	235157	0	37
P-0045724-T01-IM6	SOMATIC	SPTBN1	ALK	2	2	29446796	54848081	Intron of ALK(-):402bp before exon 20	Intron of SPTBN1(+):455bp before exon 8		GRCh37	INVERSION	10	63	Protein Fusion: in frame  {SPTBN1:ALK}	PRECISE	3to3	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.764-456:SPTBN1_c.3173-402:ALKinv	yes	unknown	25401285	171072	166309	0	63
P-0048893-T01-IM6	SOMATIC	SPTBN1	ALK	2	2	29448346	54846847	Exon 19 of ALK(-)	Intron of SPTBN1(+):2Kb after exon 7		GRCh37	INVERSION	10	97	Protein Fusion: mid-exon  {SPTBN1:ALK}	PRECISE	3to3	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.763+1517:SPTBN1_c.3153:ALKinv	yes	unknown	25398501	184256	307176	0	97
P-0053963-T02-IM6	SOMATIC	SPTBN1	ALK	2	2	29448345	54847414	Exon 19 of ALK(-)	Intron of SPTBN1(+):1Kb before exon 8		GRCh37	INVERSION	10	149	Protein Fusion: mid-exon  {SPTBN1:ALK}	PRECISE	3to3	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.764-1123:SPTBN1_c.3154:ALKinv	yes	unknown	25399069	265881	294144	0	149
P-0045724-T01-IM6	SOMATIC	SPTBN1	ALK								GRCh37				SPTBN1-ALK Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE CLINICALLY VALIDATED PANEL: SPTBN1-ALK fusion. Note: The rearrangement is an in-frame fusion between genes SPTBN1 Exon7 (NM_003128) and ALK Exon20 (NM_004304).	yes	unknown					
P-0042596-T01-IM6	SOMATIC	SQSTM1	ALK	5	2	179254603	29446511	Intron of SQSTM1(+):2Kb after exon 6	Intron of ALK(-):117bp before exon 20		GRCh37	TRANSLOCATION	10	28	Protein Fusion: in frame  {SQSTM1:ALK}	PRECISE	3to3	SQSTM1 (NM_003900) - ALK (NM_004304) fusion: t(2;5)(p23.2;q35.3)(chr2:g.29446511::chr5:g.179254603)	yes	unknown	0	0	0	0	30
P-0064837-T01-IM7	SOMATIC	SRC	SRC	20	20	36028247	36031758	Intron of SRC(+):270bp before exon 10	Exon 14 of SRC(+)		GRCh37	INVERSION	10	11	Antisense Fusion	PRECISE	3to3	SRC (NM_198291) rearrangement: c.860-271_c.1587inv	yes	unknown	3511	11471	4434	0	14
P-0017929-T01-IM6	SOMATIC	SRC	PGA3	20	11	36012632	60972308	Exon 4 of SRC(+)	Intron of PGA3(+):567bp after exon 2		GRCh37	TRANSLOCATION	10	20	Protein Fusion: mid-exon  {SRC:PGA3}	PRECISE	3to5	SRC (NM_198291) - PGA3 (NM_001079807) rearrangement: t(11;20)(q12.2;q11.23)(chr11:g.60972308::chr20:g.36012632)	yes	unknown	0	0	0	0	32
P-0045718-T01-IM6	SOMATIC	SRC	TGFB2-OT1	20	1	36014517	218901995	Exon 5 of SRC(+)	IGR: 286Kb before TGFB2-OT1(+)		GRCh37	TRANSLOCATION	10	45	SRC-intragenic	PRECISE	5to3	SRC (NM_198291) rearrangement: t(1;20)(q41;q11.23)(chr1:g.218901995::chr20:g.36014517)	yes	unknown	0	0	0	0	46
P-0054497-T01-IM6	SOMATIC	SRC	SRC	20	20	6760346	36031107	3-UTR of BMP2(+):10Kb after coding stop	Intron of SRC(+):44bp before exon 13		GRCh37	INVERSION	8	6	SRC-intragenic	PRECISE	5to5	SRC (NM_198291) rearrangement: c.1271-45:SRC_chr20:g.6760346inv	yes	unknown	29270761	154379	184395	0	7
P-0043336-T01-IM6	SOMATIC	SRC	BLCAP	20	20	36024939	36135046	Intron of SRC(+):225bp after exon 8	IGR: 11Kb before BLCAP(-)		GRCh37	DELETION	7	13	SRC-intragenic	PRECISE	3to5	SRC (NM_198291) rearrangement: c.703+225:SRC_chr20:g.36135046del	yes	unknown	110107	11875	12917	0	14
P-0048660-T02-IM7	SOMATIC	SRC	LINC00489	20	20	36024676	36271523	Exon 8 of SRC(+)	IGR: 24Kb before LINC00489(-)		GRCh37	INVERSION	10	44	SRC-intragenic	PRECISE	5to5	SRC (NM_198291) rearrangement: c.665:SRC_chr20:g.36271523inv	yes	unknown	246847	10410	13574	0	48
P-0008104-T01-IM5	SOMATIC	SRC		20	20	35971263	36971011	Promoter of SRC(+): 2Kb from tx start	IGR: 4Kb before LBP(+)		GRCh37	DELETION			SRC-intragenic	PRECISE	3to5	SRC (NM_198291) rearrangement : c.-3642_chr20:g.36971011del			999748	20493	29813	0	48
P-0060320-T02-IM7	SOMATIC	SRC		20	12	36024376	114248294	Intron of SRC(+):188bp before exon 8	IGR: 6Kb before RBM19(-)		GRCh37	TRANSLOCATION			SRC-intragenic	PRECISE	5to5	SRC (NM_198291) rearrangement: t(12;20)(q24.13;q11.23)(chr12:g.114248294::chr20:g.36024376)			0	0	0	0	5
P-0016468-T01-IM6	SOMATIC	SRCIN1	MAP3K14	17	17	36699037	43363880	Intron of SRCIN1(-):1Kb after exon 18	Exon 5 of MAP3K14(-)		GRCh37	DELETION	10	40	Protein Fusion: mid-exon  {MAP3K14:SRCIN1}	PRECISE	3to5	MAP3K14 (NM_003954) - SRCIN1 (NM_025248) rearrangement: c.1069:MAP3K14_c.3417+1021:SRCIN1del	yes	unknown	6664843	281178	407450	0	42
P-0021845-T01-IM6	SOMATIC	SRRM1	ARID1A	1	1	24987090	27087890	Intron of SRRM1(+):119bp before exon 10	Exon 6 of ARID1A(+)		GRCh37	DELETION	10	57	Protein Fusion: mid-exon  {SRRM1:ARID1A}	PRECISE	3to5	SRRM1 (NM_005839) - ARID1A (NM_006015) rearrangement: c.1316-120:SRRM1_c.2177:ARID1Adel	yes	unknown	2100800	16315	26957	0	61
P-0055311-T02-IM6	SOMATIC	SRSF2	CNTN5	17	11	74732435	99250545	Exon 2 of SRSF2(-)	5-UTR of CNTN5(+):176Kb before coding start		GRCh37	TRANSLOCATION	10	20	Antisense Fusion	PRECISE	5to3	SRSF2 (NM_003016) rearrangement: t(11;17)(q22.1;q25.1)(chr11:g.99250545::chr17:g.74732435)	yes	unknown	0	0	0	0	20
P-0031712-T01-IM6	SOMATIC	SRSF2	SRSF2	17	17	74733165	74733986	Exon 1 of SRSF2(-)	Promoter of SRSF2(-):4Kb from tx start		GRCh37	DELETION	0	25	Deletion within transcript : mid-exon	IMPPRECISE	3to5	SRSF2 (NM_003016) Rearrangement : c.-744_c.78:SRSF2del	yes	unknown	821	764	882	0	25
P-0059678-T01-IM7	SOMATIC	SRSF2	TPD52	17	8	74732996	81002240	Exon 1 of SRSF2(-)	Intron of TPD52(-):25Kb before exon 2		GRCh37	TRANSLOCATION	10	24	Protein Fusion: mid-exon  {SRSF2:TPD52}	PRECISE	5to3	SRSF2 (NM_003016) rearrangement: t(8;17)(q21.13;q25.1)(chr8:g.81002240::chr17:g.74732996)	yes	unknown	0	0	0	0	23
P-0062868-T01-IM7	SOMATIC	SS18	PRELID3A								GRCh37				SS18-PRELID3A Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SS18-PRELID3A fusion. Note: The rearrangement is an out of frame fusion between genes SS18 Exon4 (NM_001007559) and PRELID3A Exon2 (NM_006553). Note2: The functional significance of this fusion is unknown.	yes	unknown					
P-0067712-T01-IM7	SOMATIC	SS18	SSX1								GRCh37				SS18-SSX1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: SS18-SSX1 fusion. Note: The rearrangement is an in-frame fusion between genes SS18 Exon10 (NM_001007559) and SSX1 Exon6 (NM_005635). Note1: Pending investigation	yes	unknown					
P-0017262-T01-IM6	SOMATIC	SSTR3	MGA	22	15	37609650	42042118	Promoter of SSTR3(-):9Kb from tx start	Exon 17 of MGA(+)		GRCh37	TRANSLOCATION	10	51	Protein Fusion: mid-exon  {MGA:SSTR3}	PRECISE	3to3	MGA (NM_001164273) rearrangement: t(15;22)(q15.1;q13.1)(chr15:g.42042118::chr22:g.37609650)	yes	unknown	0	0	0	0	49
P-0062784-T01-IM7	SOMATIC	ST3GAL2	NOTCH1	16	9	70423524	139417319	Intron of ST3GAL2(-):1Kb before exon 4	Exon 4 of NOTCH1(-)		GRCh37	TRANSLOCATION	10	34	Protein Fusion: mid-exon  {ST3GAL2:NOTCH1}	PRECISE	5to3	ST3GAL2 (NM_006927) - NOTCH1 (NM_017617) rearrangement: t(9;16)(q34.3;q22.1)(chr9:g.139417319::chr16:g.70423524)	yes	unknown	0	0	0	0	40
P-0053547-T01-IM6	SOMATIC	ST7	MET	7	7	116339229	116781156	Exon 2 of MET(+)	Intron of ST7(+):3Kb after exon 9		GRCh37	DUPLICATION	7	3	Protein Fusion: mid-exon  {ST7:MET}	PRECISE	5to3	ST7 (NM_021908) - MET (NM_000245) fusion: c.963+2570:ST7_c.91:METdup	yes	unknown	441927	49527	128966	0	3
P-0037751-T01-IM6	SOMATIC	ST7	MET	7	7	116399527	116756324	Exon 10 of MET(+)	Intron of ST7(+):3Kb before exon 3		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {ST7:MET}	PRECISE	5to3	ST7 (NM_021908) - MET (NM_000245) Rearrangement: c.235-3291:ST7_c.2347:METdel			356797	57740	102002	0	52
P-0033178-T01-IM6	SOMATIC	ST7	MET	7	7	116339441	116693004	Exon 2 of MET(+)	Intron of ST7(+):47Kb before exon 2		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {ST7:MET}	PRECISE	5to3	ST7 (NM_021908) - MET (NM_000245) rearrangement: c.152-46812:ST7_c.303:METdup			353563	54167	71952	0	4
P-0065419-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123159808	123173507	Intron of STAG2(+):40bp after exon 4	Intron of STAG2(+):2Kb after exon 6		GRCh37	DELETION	8	4	Deletion of 2 exons : out of frame	PRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.123+40_c.385+2034del	yes	unknown	13699	2683	2520	0	4
P-0015301-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123194178	123200138	Intron of STAG2(+): 896bp before exon 15	Intron of STAG2(+): 26bp after exon 21		GRCh37	DELETION	15	12	Deletion of 7 exons: in frame	PRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.1417-896_c.2184+26del	yes	unknown	5960	9741	11870	0	11
P-0068064-T02-IM7	SOMATIC	STAG2		X	X	123126057	123181107	5-UTR of STAG2(+):30Kb before coding start	Intron of STAG2(+):96bp before exon 9		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.668-97:STAG2_chrX:g.123126057del			55050	2320	5396	0	11
P-0051249-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123194314	123202474	Intron of STAG2(+):759bp before exon 16	Exon 24 of STAG2(+)		GRCh37	DUPLICATION	5	3	Duplication within transcript : mid-exon	PRECISE	5to3	STAG2 (NM_001042749) rearrangement: c.1417-760_c.2326dup	yes	unknown	8160	3014	6488	0	3
P-0080149-T01-IM7	SOMATIC	STAG2		X	X	123211855	123220762	Exon 27 of STAG2(+)	Intron of STAG2(+):142bp after exon 30		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	STAG2 (NM_001042749) rearrangement: c.2722_c.3277+142dup			8907	5916	8458	0	25
P-0052121-T01-IM6	SOMATIC	STAG2	GALK2	X	15	123202486	49527913	Exon 24 of STAG2(+)	Intron of GALK2(+):134bp before exon 4		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {STAG2:GALK2}	PRECISE	3to5	STAG2 (NM_001042749) - GALK2 (NM_002044) rearrangement: t(15;X)(q21.2;q25)(chr15:g.49527913::chrX:g.123202486)			0	0	0	0	5
P-0046582-T01-IM6	SOMATIC	STAG2	STAG2	X	X	122976403	123190021	IGR: 17Kb before XIAP(+)	Exon 14 of STAG2(+)		GRCh37	INVERSION	10	25	STAG2-intragenic	PRECISE	5to5	STAG2 (NM_001042749) rearrangement: c.1240:STAG2_chrX:g.122976403inv	yes	unknown	213618	24312	38357	0	30
P-0066345-T01-IM7	SOMATIC	STAG2	PRR32	X	X	123184236	126184145	Intron of STAG2(+):77bp after exon 11	IGR: 230Kb before PRR32(+)		GRCh37	DELETION	0	5	STAG2-intragenic	IMPPRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.1017+77:STAG2_chrX:g.126184145del	yes	unknown	2999909	50209	38739	0	5
P-0075328-T01-IM7	SOMATIC	STAG2	STAG2	X	X	69802918	123191710	Intron of TEX11(-):9Kb after exon 25	Intron of STAG2(+):5bp before exon 15		GRCh37	DELETION	0	6	STAG2-intragenic	IMPPRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.1305-6:STAG2_chrX:g.69802918del	yes	unknown	53388792	157888	249222	0	6
P-0004999-T01-IM5	SOMATIC	STAG2		X	X	123199716	130653015	Intron of STAG2(+): 10bp before exon 20	IGR: 25Kb before OR13H1(+)		GRCh37	INVERSION			STAG2-intragenic	PRECISE	5to5	STAG2(NM_001042749)  Rearrangement : c.2026-10:STAG2_chrX:g.130653015			7453299	28456	26673	0	17
P-0008171-T01-IM5	SOMATIC	STAG2		X	X	123224802	129436158	Exon 32 of STAG2(+)	IGR: 38Kb before SLC25A14(+)		GRCh37	DELETION			STAG2-intragenic	PRECISE	3to5	STAG2 (NM_001042749) rearrangement: c.3566:STAG2_chrX:g.129436158del.			6211356	7959	11831	0	14
P-0016171-T01-IM6	SOMATIC	STAG2		X	X	123179049	124276665	Exon 8 of STAG2(+)	IGR: 177Kb before LOC100129520(+)		GRCh37	DUPLICATION			STAG2-intragenic	PRECISE	5to3	STAG2 (NM_001042749) rearrangement: c.498:STAG2_g.124276665dup			1097616	21490	38262	0	23
P-0025763-T01-IM6	SOMATIC	STAG2		X	5	123178980	85708121	Intron of STAG2(+):33bp before exon 8	IGR: 130Kb before NBPF22P(+)		GRCh37	TRANSLOCATION			STAG2-intragenic	PRECISE	5to5	STAG2 (NM_001042749) Rearrangement : t(X;5)(q25;q14.2)(chrX:g.123178980::chr5:g.85708121)			0	0	0	0	34
P-0034177-T01-IM6	SOMATIC	STARD4	APC	5	5	110839674	112157723	Intron of STARD4(-):2Kb before exon 4	Intron of APC(+):35bp after exon 11		GRCh37	INVERSION	0	5	Protein Fusion: out of frame  {APC:STARD4}	IMPPRECISE	3to3	APC (NM_000038) - STARD4 (NM_139164) rearrangement: c.1408+35:APC_c.156-1888:STARD4inv	yes	unknown	1318049	16003	21505	0	5
P-0023049-T01-IM6	SOMATIC	STAT3	FAM134C	17	17	40481692	40749768	Intron of STAT3(-):27bp before exon 13	Intron of FAM134C(-):6Kb before exon 2		GRCh37	INVERSION	10	26	Antisense Fusion	PRECISE	5to5	STAT3 (NM_139276) rearrangement: c.1140-27:STAT3_chr17:g.40749768inv	yes	unknown	268076	17326	29548	0	39
P-0051162-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40466303	40468746	Promoter of STAT5A(+):27Kb from tx start	Intron of STAT3(-):60bp after exon 23		GRCh37	DELETION	10	9	Antisense Fusion	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.2257+61:STAT3_chr17:g.40466303del	yes	unknown	2443	922	1198	0	10
P-0064070-T01-IM7	SOMATIC	STAT3	STAT3	17	17	40483004	40490849	Intron of STAT3(-):485bp after exon 11	Intron of STAT3(-):19bp before exon 6		GRCh37	INVERSION	7	4	Antisense Fusion	PRECISE	5to5	STAT3 (NM_139276) rearrangement: c.469-19_c.1109+486inv	yes	unknown	7845	6072	10350	0	4
P-0043243-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40491441	40498154	Intron of STAT3(-):14bp before exon 5	Intron of STAT3(-):432bp after exon 3		GRCh37	DELETION	10	6	Deletion of 1 exon : in frame	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.273+433_c.373-14del	yes	unknown	6713	1891	2799	0	6
P-0023321-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40496534	40500432	Intron of STAT3(-):1Kb after exon 4	Exon 2 of STAT3(-)		GRCh37	DELETION	10	40	Deletion within transcript : mid-exon	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.372+1043_c.103del	yes	unknown	3898	5095	4370	0	42
P-0034063-T01-IM6	SOMATIC	STAT3		17	17	40479640	40497576	Intron of STAT3(-):1Kb before exon 15	Exon 4 of STAT3(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	STAT3(NM_139276) Rearrangement: c.372+1_c.1282-1423			17936	8881	8183	0	22
P-0044549-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40480827	40491507	Intron of STAT3(-):600bp after exon 14	Intron of STAT3(-):80bp before exon 5		GRCh37	DUPLICATION	10	54	Duplication of 10 exons : in frame	PRECISE	5to3	STAT3 (NM_139276) rearrangement: c.373-80_c.1281+601dup	yes	unknown	10680	7806	29718	0	92
P-0041666-T01-IM6	SOMATIC	STAT3		17	17	40474675	40491525	Intron of STAT3(-):163bp before exon 21	Intron of STAT3(-):98bp before exon 5		GRCh37	DUPLICATION			Duplication of 16 exons : out of frame	PRECISE	5to3	STAT3 (NM_139276) rearrangement: c.373-98_c.1889-163dup			16850	23156	23890	0	13
P-0059971-T01-IM7	SOMATIC	STAT3	STAT3	17	17	40481105	40490834	Intron of STAT3(-):322bp after exon 14	Intron of STAT3(-):4bp before exon 6		GRCh37	DUPLICATION	10	58	Duplication of 9 exons : in frame	PRECISE	5to3	STAT3 (NM_139276) rearrangement: c.469-4_c.1281+323dup	yes	unknown	9729	12168	18291	0	59
P-0016246-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40481248	40489572	Intron of STAT3(-):179bp after exon 14	Exon 8 of STAT3(-)		GRCh37	DUPLICATION	10	104	Duplication within transcript : mid-exon	PRECISE	5to3	STAT3 (NM_139276) Rearrangement : c.678_c.1281+180del	yes	unknown	8324	5123	14697	0	118
P-0016171-T01-IM6	SOMATIC	STAT3	EZH1	17	17	40489839	40881610	Exon 7 of STAT3(-)	5-UTR of EZH1(-):27Kb before coding start		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {STAT3:EZH1}	PRECISE	5to3	STAT3 (NM_139276) - EZH1 (NM_001991) rearrangement: c.587:STAT3_c.-11-640:EZH1dup			391771	37437	47873	0	10
P-0060084-T02-IM7	SOMATIC	STAT3	STAT3	17	17	39131715	40478135	Promoter of KRT40(-):2Kb from tx start	Exon 15 of STAT3(-)		GRCh37	DELETION	6	4	Protein Fusion: mid-exon  {STAT3:KRT40}	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.1364:STAT3_chr17:g.39131715del	yes	unknown	1346420	81296	161476	0	4
P-0034944-T01-IM6	SOMATIC	STAT3	STAT5A	17	17	40461471	40484229	Exon 19 of STAT5A(+)	Intron of STAT3(-):680bp before exon 11		GRCh37	INVERSION	10	52	Protein Fusion: mid-exon  {STAT3:STAT5A}	PRECISE	5to5	STAT3 (NM_139276) - STAT5A (NM_003152) rearrangement: c.1050-680:STAT3_c.2191:STAT5Ainv	yes	unknown	22758	18274	32994	0	71
P-0005879-T01-IM5	SOMATIC	STAT3	RGS9	17	17	40476809	63200520	Exon 17 of STAT3(-)	Intron of RGS9(+): 101bp after exon 15		GRCh37	INVERSION	70	90	Protein fusion: mid-exon (RGS9-STAT3)	PRECISE	3to3	RGS9  (NM_003835) - STAT3 (NM_139276) Rearrangement :  c.1203+101:RGS9_c.1520:STAT3inv	yes	unknown	22723711	285002	318633	0	86
P-0046881-T01-IM6	SOMATIC	STAT3	PRKAG2	17	7	40477132	151490268	Intron of STAT3(-):53bp before exon 16	Intron of PRKAG2(-):7Kb before exon 2		GRCh37	TRANSLOCATION	10	112	STAT3-intragenic	PRECISE	3to3	STAT3 (NM_139276) rearrangement: t(7;17)(q36.1;q21.2)(chr7:g.151490268::chr17:g.40477132)	yes	unknown	0	0	0	0	110
P-0051353-T01-IM6	SOMATIC	STAT3	ROCR	17	17	40485910	69894661	Exon 9 of STAT3(-)	IGR: 123Kb before LOC102723505(-)		GRCh37	INVERSION	10	5	STAT3-intragenic	PRECISE	3to3	STAT3 (NM_139276) rearrangement: c.955:STAT3_chr17:g.69894661inv	yes	unknown	29408751	320303	355324	0	5
P-0004999-T01-IM5	SOMATIC	STAT3		17	13	40490706	31343786	Intron of STAT3(-): 43bp after exon 6	IGR: 5Kb after ALOX5AP(+)		GRCh37	TRANSLOCATION			STAT3-intragenic	PRECISE	5to5	STAT3(NM_139276) Rearrangement  : t(17;13)(17q21.2;13p12.3)(chr17:g.40490706::chr13:g.31343786)			0	0	0	0	12
P-0034385-T01-IM6	SOMATIC	STAT3		17	17	40498956	59012270	Intron of STAT3(-):225bp before exon 3	Intron of BCAS3(+):10Kb after exon 13		GRCh37	DELETION			STAT3-intragenic	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.129-225:STAT3_chr17:g.59012270del			18513314	225845	674027	0	5
P-0035013-T01-IM6	SOMATIC	STAT3		17	17	40469336	55289920	Intron of STAT3(-):94bp before exon 22	IGR: 44Kb before MSI2(+)		GRCh37	DELETION			STAT3-intragenic	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.2102-94:STAT3_chr17:g.55289920del			14820584	175273	242636	0	15
P-0089265-T01-IM7	SOMATIC	STAT3		17	17	40485905	40595683	Intron of STAT3(-):3bp after exon 9	IGR: 15Kb before ATP6V0A1(+)		GRCh37	DELETION			STAT3-intragenic	PRECISE	3to5	STAT3 (NM_139276) rearrangement: c.956+4:STAT3_chr17:g.40595683del			109778	11680	21436	0	13
P-0015196-T01-IM6	SOMATIC	STAT3		17	4	40469189	116733547	Intron of STAT3(-): 11bp after exon 22	IGR: 487Kb before MIR1973(+)		GRCh37	TRANSLOCATION			STAT3-intragenic	PRECISE	3to3	STAT3 (NM_139276) rearrangement: t(4;7)(q26;q21.2)(chr4:g.116733547::chr17:g.40469189)			0	0	0	0	12
P-0040834-T01-IM6	SOMATIC	STAT3	STAT3	21	17	31721063	40485875	Promoter of KRTAP23-1(-):347bp from tx start	Intron of STAT3(-):33bp after exon 9		GRCh37	TRANSLOCATION	10	19	Transcript Fusion {KRTAP23-1:STAT3}	PRECISE	5to3	STAT3 (NM_139276) rearrangement: t(17;21)(q21.2;q22.11)(chr17:g.40485875::chr21:g.31721063)	yes	unknown	0	0	0	0	20
P-0077762-T01-IM7	SOMATIC	STAT3	ASH1L	17	1	40475540	155500714	Intron of STAT3(-):50bp after exon 18	5-UTR of ASH1L(-):193Kb before coding start		GRCh37	TRANSLOCATION	10	40	Transcript Fusion {STAT3:ASH1L}	PRECISE	5to3	STAT3 (NM_139276) rearrangement: t(1;17)(q22;q21.2)(chr1:g.155500714::chr17:g.40475540)	yes	unknown	0	0	0	0	40
P-0030717-T01-IM6	SOMATIC	STAT5A	EZH1	17	17	40439374	40855660	Promoter of STAT5A(+):190bp from tx start	Intron of EZH1(-):97bp after exon 19		GRCh37	DELETION	10	52	Antisense Fusion	PRECISE	3to5	EZH1 (NM_001991) rearrangement: c.2098+98:EZH1_chr17:g.40439374del	yes	unknown	416286	68863	48665	0	53
P-0042214-T01-IM6	SOMATIC	STAT5A	GAST	17	17	39872004	40451887	Intron of GAST(+):25bp before exon 3	Exon 7 of STAT5A(+)		GRCh37	DUPLICATION	10	17	Protein Fusion: mid-exon  {STAT5A:GAST}	PRECISE	5to3	STAT5A (NM_003152) - GAST (NM_000805) rearrangement: c.669:STAT5A_c.212-26:GASTdup	yes	unknown	579883	43120	48480	0	24
P-0038299-T01-IM6	SOMATIC	STAT5A	TTC7B	17	14	40458420	91189253	Exon 14 of STAT5A(+)	Intron of TTC7B(-):7Kb after exon 5		GRCh37	TRANSLOCATION	10	8	Protein Fusion: mid-exon  {STAT5A:TTC7B}	PRECISE	3to3	STAT5A (NM_003152) - TTC7B (NM_001010854) rearrangement: t(14;17)(q32.11;q21.2)(chr14:g.91189253::chr17:g.40458420)	yes	unknown	0	0	0	0	7
P-0076204-T01-IM7	SOMATIC	STAT5A	TUBD1	17	17	40460340	57948086	Exon 17 of STAT5A(+)	Intron of TUBD1(-):4Kb after exon 6		GRCh37	INVERSION	7	5	Protein Fusion: mid-exon  {STAT5A:TUBD1}	PRECISE	3to3	STAT5A (NM_003152) - TUBD1 (NM_016261) rearrangement: c.2051:STAT5A_c.934+3814:TUBD1inv	yes	unknown	17487746	353875	367882	0	5
P-0009356-T01-IM5	SOMATIC	STAT5A	CA10	17	17	40453449	49913044	Exon 10 of STAT5A(+)	Intron of CA10(-): 88Kb before exon 4		GRCh37	INVERSION	92	40	Protein fusion: mid-exon (CA10-STAT5A)	PRECISE	5to5	CA10 (NM_001082533) - STAT5A (NM_003152) rearrangement: c.280-87866:CA10_c.1146:STAT5Ainv	yes	unknown	9459595	175636	157922	0	40
P-0015204-T01-IM6	SOMATIC	STAT5A	STAT3	17	17	40460286	40466320	Exon 17 of STAT5A(+)	3-UTR of STAT3(-): 1Kb after coding stop		GRCh37	DELETION			STAT5A-STAT3 Fusion	PRECISE	3to5	STAT5A (NM_003152) - STAT3 (NM_139276) rearrangement: c.1997:STAT5A_c.*1443:STAT3del			6034	5770	6897	0	9
P-0015059-T01-IM6	SOMATIC	STAT5B		17	17	40362151	40365340	Intron of STAT5B(-): 38bp after exon 15	Intron of STAT5B(-): 1Kb before exon 13		GRCh37	INVERSION			Antisense fusion	PRECISE	5to5	STAT5B (NM_012448) rearrangement: c.1474-1132_c.1906+38inv			3189	6800	5329	0	6
P-0069296-T01-IM7	SOMATIC	STAT5B	STAT5B	17	17	40372129	40386021	Intron of STAT5B(-):269bp before exon 6	5-UTR of STAT5B(-):32Kb before coding start		GRCh37	DELETION	10	7	Deletion within transcript	PRECISE	3to5	STAT5B (NM_012448) rearrangement: c.551-269:STAT5B_chr17:g.40386021del	yes	unknown	13892	5335	6772	0	9
P-0043297-T01-IM6	SOMATIC	STAT5B	ETV4	17	17	40375506	41626578	Exon 5 of STAT5B(-)	Promoter of ETV4(-):21Kb from tx start		GRCh37	DELETION	10	143	Protein Fusion: mid-exon  {ETV4:STAT5B}	PRECISE	3to5	STAT5B (NM_012448) rearrangement: c.444:STAT5B_chr17:g.41626578del	yes	unknown	1251072	167007	233856	0	249
P-0066823-T02-IM7	SOMATIC	STAT5B	KRT12	17	17	39025869	40384073	Promoter of KRT12(-):8Kb from tx start	Exon 2 of STAT5B(-)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {KRT12:STAT5B}	PRECISE	5to3	STAT5B (NM_012448) - KRT12 (NM_000223) rearrangement: c.73: STAT5B_c.-2431: KRT12dup			1358204	27360	21210	0	24
P-0048837-T01-IM6	SOMATIC	STAT5B	GSDMA	17	17	38130912	40359518	Intron of GSDMA(+):232bp after exon 9	Intron of STAT5B(-):57bp after exon 16		GRCh37	INVERSION	0	12	Protein Fusion: out of frame  {STAT5B:GSDMA}	IMPPRECISE	5to5	STAT5B (NM_012448) - GSDMA (NM_178171) rearrangement: c.2077+58:STAT5B_c.906+232:GSDMAinv	yes	unknown	2228606	25322	97158	0	12
P-0049986-T01-IM6	SOMATIC	STAT5B	CLEC3B	17	3	40384144	45058637	Exon 2 of STAT5B(-)	IGR: 9Kb before CLEC3B(+)		GRCh37	TRANSLOCATION	10	11	STAT5B-intragenic	PRECISE	3to3	STAT5B (NM_012448) rearrangement: t(3;17)(p21.31;q21.2)(chr3:g.45058637::chr17:g.40384144)	yes	unknown	0	0	0	0	11
P-0052429-T01-IM6	SOMATIC	STAT5B	LINC01212	17	3	40379376	70193186	Intron of STAT5B(-):170bp after exon 3	IGR: 144Kb before LINC01212(+)		GRCh37	TRANSLOCATION	10	14	STAT5B-intragenic	PRECISE	5to5	STAT5B (NM_012448) rearrangement: t(3;17)(p13;q21.2)(chr3:g.70193186::chr17:g.40379376)	yes	unknown	0	0	0	0	14
P-0052448-T02-IM6	SOMATIC	STAT5B	LOC101927166	17	17	40354939	46524723	Intron of STAT5B(-):113bp before exon 17	5-UTR of LOC101927166(+):19Kb before coding start		GRCh37	DELETION	10	23	STAT5B-intragenic	PRECISE	3to5	STAT5B (NM_012448) rearrangement: c.2078-113:STAT5B_chr17:g.46524723del	yes	unknown	6169784	185581	284115	1	38
P-0017448-T01-IM6	SOMATIC	STAU1	RTEL1	20	20	47757080	62325877	Intron of STAU1(-):5Kb before exon 6	Intron of RTEL1(+):36bp after exon 31		GRCh37	INVERSION	10	17	Protein Fusion: out of frame  {RTEL1:STAU1}	PRECISE	3to3	RTEL1 (NM_032957) - STAU1 (NM_017453) rearrangement: c.3181+36:RTEL1_c.511-4612:STAU1inv	yes	unknown	14568797	76162	276681	0	17
P-0048702-T01-IM6	SOMATIC	STIP1	RPS6KA4	11	11	63967033	64137333	Intron of STIP1(+):378bp before exon 9	Exon 14 of RPS6KA4(+)		GRCh37	DELETION	10	58	Protein Fusion: mid-exon  {STIP1:RPS6KA4}	PRECISE	3to5	STIP1 (NM_006819) - RPS6KA4 (NM_003942) rearrangement: c.1024-379:STIP1_c.1765:RPS6KA4del	yes	unknown	170300	22828	23983	0	68
P-0009856-T01-IM5	SOMATIC	STK11	C19orf26	19	19	1219350	1231272	Exon 3 of STK11(+)	Exon 9 of C19orf26(-)		GRCh37	DELETION	73	68	Antisense fusion	PRECISE	3to5	STK11 (NM_000455) rearrangement : c.402_*3697del	yes	unknown	11922	13670	8768	0	68
P-0035516-T01-IM6	SOMATIC	STK11	STK11	19	19	1220576	1222933	Intron of STK11(+):3bp before exon 5	Intron of STK11(+):50bp before exon 8		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	3to3	STK11 (NM_000455) rearrangement: c.598-4_c.921-51inv	yes	unknown	2357	4634	6867	0	15
P-0070381-T02-IM7	SOMATIC	STK11	STK11	19	19	1113302	1220831	Intron of SBNO2(-):231bp after exon 19	Intron of STK11(+):115bp after exon 5		GRCh37	DUPLICATION	10	23	Antisense Fusion	PRECISE	5to3	STK11 (NM_000455) rearrangement: c.734+115:STK11_chr19:g.1113302dup	yes	unknown	107529	6520	15282	0	23
P-0077786-T01-IM7	SOMATIC	STK11	CACNA1A	19	19	1221635	13383573	Intron of STK11(+):296bp after exon 6	Intron of CACNA1A(-):3Kb after exon 24		GRCh37	DELETION	10	9	Antisense Fusion	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.862+296:STK11_chr19:g.13383573del	yes	unknown	12161938	323799	430270	0	9
P-0071389-T02-IM7	SOMATIC	STK11		19	19	1219387	1223767	Exon 3 of STK11(+)	Intron of STK11(+):596bp after exon 8		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	STK11 (NM_000455) rearrangement: c.439_c.1108+596inv			4380	5406	11222	0	13
P-0086117-T01-IM7	SOMATIC	STK11		19	19	1206295	1222075	5-UTR of STK11(+):617bp before coding start	Intron of STK11(+):70bp after exon 7		GRCh37	INVERSION			Antisense Fusion	IMPPRECISE	3to3	STK11 (NM_000455) rearrangement: c.920+70:STK11_chr19:g.1206295inv			15780	11456	22953	0	12
P-0058859-T01-IM7	SOMATIC	STK11		19	19	1218957	1220178	Intron of STK11(+):365bp before exon 3	Intron of STK11(+):193bp before exon 4		GRCh37	DELETION			Deletion of 1 exon : in frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.375-366_c.465-194del			1221	1840	1348	0	8
P-0025917-T02-IM6	SOMATIC	STK11	STK11	19	19	1221607	1222950	Intron of STK11(+):268bp after exon 6	Intron of STK11(+):33bp before exon 8		GRCh37	DELETION	10	25	Deletion of 1 exon : out of frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.862+268_c.921-34del	yes	unknown	1343	828	573	0	25
P-0039650-T01-IM6	SOMATIC	STK11		19	19	1222095	1224177	Intron of STK11(+):90bp after exon 7	Intron of STK11(+):1Kb after exon 8		GRCh37	DELETION			Deletion of 1 exon : out of frame	IMPPRECISE	3to5	STK11 (NM_000455) rearrangement: c.920+90_c.1108+1006del			2082	2871	1975	0	13
P-0005914-T01-IM5	SOMATIC	STK11	STK11	19	19	1217930	1219293	Intron of STK11(+): 486bp before exon 2	Intron of STK11(+): 30bp before exon 3		GRCh37	DELETION	5	5	Deletion of 1 exon: in frame	PRECISE	3to5	STK11 (NM_000455) rearrangement : c.291-486_375-30del	yes	unknown	1363	2161	1718	0	5
P-0077289-T02-IM7	SOMATIC	STK11	STK11	19	19	1221579	1225862	Intron of STK11(+):240bp after exon 6	Intron of STK11(+):590bp before exon 9		GRCh37	DELETION	10	21	Deletion of 2 exons : in frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.862+240_c.1109-591del	yes	unknown	4283	3526	3046	0	21
P-0086544-T01-IM7	SOMATIC	STK11		19	19	1218957	1220736	Intron of STK11(+):365bp before exon 3	Intron of STK11(+):20bp after exon 5		GRCh37	DELETION			Deletion of 3 exons : in frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.375-366_c.734+20del			1779	3463	1793	0	9
P-0036810-T01-IM6	SOMATIC	STK11	STK11	19	19	1220534	1222036	Intron of STK11(+):30bp after exon 4	Intron of STK11(+):31bp after exon 7		GRCh37	DELETION	10	49	Deletion of 3 exons : out of frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.597+30_c.920+31del	yes	unknown	1502	4643	1848	0	49
P-0051685-T01-IM6	SOMATIC	STK11		19	19	1216843	1220550	Intron of STK11(+):2Kb before exon 2	Intron of STK11(+):29bp before exon 5		GRCh37	DELETION			Deletion of 3 exons : out of frame	IMPPRECISE	3to5	STK11 (NM_000455) rearrangement: c.291-1573_c.598-30del			3707	3381	1962	0	83
P-0004335-T01-IM5	SOMATIC	STK11	STK11	19	19	1217895	1220540	Intron of STK11(+): 521bp before exon 2	Intron of STK11(+): 36bp after exon 4		GRCh37	DELETION	5	7	Deletion of 3 exons: out of frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.291-521_597+36del	yes	unknown	2645	4064	2921	0	7
P-0063348-T02-IM7	SOMATIC	STK11		19	19	1219518	1222762	Intron of STK11(+):106bp after exon 3	Intron of STK11(+):221bp before exon 8		GRCh37	DELETION			Deletion of 4 exons : in frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.464+106_c.921-222del			3244	12945	5710	0	69
P-0010507-T01-IM5	SOMATIC	STK11		19	19	1218719	1221946	Intron of STK11(+): 220bp after exon 2	Intron of STK11(+): 2bp before exon 7		GRCh37	DELETION			Deletion of 4 exons: out of frame	PRECISE	3to5	STK11 (NM_000455) rearrangement : c.374+220_863-2del			3227	7741	6045	0	17
P-0069103-T01-IM7	SOMATIC	STK11		19	19	1216395	1221756	Intron of STK11(+):2Kb before exon 2	Intron of STK11(+):191bp before exon 7		GRCh37	DELETION			Deletion of 5 exons : out of frame	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.291-2021_c.863-192del			5361	5592	5101	0	20
P-0031241-T01-IM6	SOMATIC	STK11	STK11	19	19	1206879	1207995	5-UTR of STK11(+):33bp before coding start	Intron of STK11(+):793bp after exon 1		GRCh37	DELETION	10	5	Deletion within transcript	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.-34_c.290+793del	yes	unknown	1116	2478	1106	0	5
P-0016792-T01-IM6	SOMATIC	STK11	STK11	19	19	1205213	1220690	Promoter of STK11(+):584bp from tx start	Exon 5 of STK11(+)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) Rearrangement : c.-1700_c.708del	yes	unknown	15477	6095	7287	0	16
P-0027889-T01-IM6	SOMATIC	STK11	STK11	19	19	1205538	1207181	Promoter of STK11(+):259bp from tx start	Exon 1 of STK11(+)		GRCh37	DELETION	10	10	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearragement: c.269:STK11_chr19:g.1205538del	yes	unknown	1643	2582	3186	0	11
P-0028676-T01-IM6	SOMATIC	STK11	STK11	19	19	1220465	1229314	Exon 4 of STK11(+)	Promoter of STK11(+):24Kb from tx start		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.558_c.*1739del	yes	unknown	8849	8985	4506	0	5
P-0032513-T01-IM6	SOMATIC	STK11	STK11	19	19	1207034	1209544	Exon 1 of STK11(+)	Intron of STK11(+):2Kb after exon 1		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) Rearrangement : c.122_c.290+2342del	yes	unknown	2510	1663	1556	0	21
P-0035009-T01-IM6	SOMATIC	STK11	STK11	19	19	1207134	1222364	Exon 1 of STK11(+)	Intron of STK11(+):359bp after exon 7		GRCh37	DELETION	10	82	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.222_c.920+359del	yes	unknown	15230	6862	3233	0	90
P-0041900-T01-IM6	SOMATIC	STK11	STK11	19	19	1207005	1212009	Exon 1 of STK11(+)	Intron of STK11(+):5Kb after exon 1		GRCh37	DELETION	10	16	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.93_c.290+4807del	yes	unknown	5004	3134	1748	0	17
P-0052423-T01-IM6	SOMATIC	STK11	STK11	19	19	1221277	1226618	Exon 6 of STK11(+)	Exon 9 of STK11(+)		GRCh37	DELETION	10	79	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.800_c.1274del	yes	unknown	5341	7760	6309	0	82
P-0064033-T01-IM7	SOMATIC	STK11	STK11	19	19	1205334	1207172	Promoter of STK11(+):463bp from tx start	Exon 1 of STK11(+)		GRCh37	DELETION	10	42	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.260:STK11_chr19:g.1205334del	yes	unknown	1838	1864	1570	0	43
P-0067317-T01-IM7	SOMATIC	STK11	STK11	19	19	1217050	1221957	Intron of STK11(+):1Kb before exon 2	Exon 7 of STK11(+)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.291-1366_c.872del	yes	unknown	4907	6558	4920	0	9
P-0070824-T01-IM7	SOMATIC	STK11	STK11	19	19	1220394	1221838	Exon 4 of STK11(+)	Intron of STK11(+):109bp before exon 7		GRCh37	DELETION	10	22	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.487_c.863-110del	yes	unknown	1444	4319	3632	0	22
P-0064017-T01-IM7	SOMATIC	STK11	STK11	19	19	1207095	1209947	Exon 1 of STK11(+)	Intron of STK11(+):3Kb after exon 1		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.183_c.290+2745del	yes	unknown	2852	941	781	0	24
P-0033884-T01-IM6	SOMATIC	STK11		19	19	1220496	1222339	Exon 4 of STK11(+)	Intron of STK11(+):334bp after exon 7		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.589_c.920+334del			1843	4680	1782	0	127
P-0087617-T01-IM7	SOMATIC	STK11		19	19	1205588	1207011	Promoter of STK11(+):209bp from tx start	Exon 1 of STK11(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.99:STK11_chr19:g.1205588del			1423	791	383	0	51
P-0008715-T01-IM5	SOMATIC	STK11	STK11	19	19	1220618	1222740	Exon 5 of STK11(+)	Intron of STK11(+): 244bp before exon 8		GRCh37	DELETION	51	31	Deletion within transcript: mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.636_c.921-244del	yes	unknown	2122	4152	1852	0	29
P-0004759-T01-IM5	SOMATIC	STK11		19	19	1221542	1226485	Intron of STK11(+): 203bp after exon 6	Exon 9 of STK11(+)		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	STK11 (NM_000455) rearrangement : c.862+203_1141del			4943	5009	2600	0	18
P-0011303-T01-IM5	SOMATIC	STK11	STK11	19	19	1218939	1221207	Intron of STK11(+): 384bp before exon 3	Intron of STK11(+): 5bp before exon 6		GRCh37	DUPLICATION	75	65	Duplication of 3 exons: in frame	PRECISE	5to3	STK11 (NM_000455) rearrangement: c.375-384_c.735-5dup	yes	unknown	2268	12348	11202	0	59
P-0061672-T01-IM7	SOMATIC	STK11	STK11	19	19	1214753	1221930	Intron of STK11(+):4Kb before exon 2	Intron of STK11(+):17bp before exon 7		GRCh37	DUPLICATION	10	9	Duplication of 5 exons : out of frame	PRECISE	5to3	STK11 (NM_000455) rearrangement: c.291-3663_c.863-18dup	yes	unknown	7177	10342	11706	0	9
P-0013355-T01-IM5	SOMATIC	STK11	STK11	19	19	1219880	1221259	Intron of STK11(+): 468bp after exon 3	Exon 6 of STK11(+)		GRCh37	DUPLICATION	14	7	Duplication within transcript: mid-exon	PRECISE	5to3	STK11 (NM_000455) rearrangement: c.464+468_c.782dup	yes	unknown	1379	5705	5165	0	7
P-0022800-T01-IM6	SOMATIC	STK11	ARID3A	19	19	925726	1206992	Promoter of ARID3A(+):310bp from tx start	Exon 1 of STK11(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {STK11:ARID3A}	PRECISE	5to3	STK11 (NM_000455) - ARID3A (NM_005224) Rearrangement : c.80:STK11_c.-601:ARID3Adup			281266	1364	1615	0	7
P-0023682-T01-IM6	SOMATIC	STK11	CDC42	19	1	1221235	22405880	Exon 6 of STK11(+)	Intron of CDC42(+):804bp after exon 2		GRCh37	TRANSLOCATION	10	33	Protein Fusion: mid-exon  {STK11:CDC42}	PRECISE	3to5	STK11 (NM_000455) - CDC42 (NM_001791) Rearrangement : t(1,19)(p13.3; p36.13)(chr1:g.22405880::chr19:g.1221235)	yes	unknown	0	0	0	0	44
P-0045304-T01-IM6	SOMATIC	STK11	MIDN	19	19	1223023	1256987	Exon 8 of STK11(+)	Intron of MIDN(+):6bp before exon 8		GRCh37	DELETION	10	8	Protein Fusion: mid-exon  {STK11:MIDN}	PRECISE	3to5	STK11 (NM_000455) - MIDN (NM_177401) rearrangement: c.960:STK11_c.1130-7:MIDNdel	yes	unknown	33964	4381	4543	0	9
P-0007338-T01-IM5	SOMATIC	STK11	REEP6	19	19	1219408	1495314	Exon 3 of STK11(+)	Exon 2 of REEP6(+)		GRCh37	DELETION	36	25	Protein fusion: mid-exon (STK11-REEP6)	PRECISE	3to5	STK11 (NM_000455) - REEP6 (NM_138393) rearrangement : c.460:STK11_c.137:REEP6del	yes	unknown	275906	9392	8980	0	25
P-0005191-T01-IM5	SOMATIC	STK11	MIDN	19	19	1223177	1252151	Intron of STK11(+): 6bp after exon 8	Intron of MIDN(+): 251bp after exon 4		GRCh37	DELETION	22	6	Protein fusion: out of frame (STK11-MIDN)	PRECISE	3to5	STK11 (NM_000455) - MIDN (NM_177401) Rearrangement :  c.1108+6:STK11_c.384+251:MIDNdel	yes	unknown	28974	2020	1276	0	6
P-0007518-T01-IM5	SOMATIC	STK11	STK11	19	19	1221227	1226791	Exon 6 of STK11(+)	3-UTR of STK11(+): 145bp after coding stop		GRCh37	INVERSION	113	58	STK11-intragenic	PRECISE	3to3	STK11 (NM_000455) Rearrangement : c.*16+129_750inv	yes	unknown	5564	6147	7200	0	58
P-0036000-T01-IM6	SOMATIC	STK11	STK11	19	19	1192835	1220313	IGR: 13Kb before STK11(+)	Intron of STK11(+):58bp before exon 4		GRCh37	DELETION	0	7	STK11-intragenic	IMPPRECISE	3to5	STK11 (NM_000455) Rearrangement: chr19:g.1192835_c.465-59del	yes	unknown	27478	5368	3406	0	7
P-0051899-T01-IM6	SOMATIC	STK11	STK11	19	19	1199493	1226407	IGR: 6Kb before STK11(+)	Intron of STK11(+):45bp before exon 9		GRCh37	DELETION	10	37	STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.1109-46:STK11_chr19:g.1199493del	yes	unknown	26914	18453	7640	0	38
P-0043153-T01-IM6	SOMATIC	STK11	STK11	19	19	1202211	1218398	IGR: 4Kb before STK11(+)	Intron of STK11(+):17bp before exon 2		GRCh37	DELETION	10	57	STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.291-18:STK11_chr19:g.1202211del	yes	unknown	16187	4429	3039	0	60
P-0075734-T02-IM7	SOMATIC	STK11	STK11	19	19	1193859	1220674	IGR: 12Kb before STK11(+)	Exon 5 of STK11(+)		GRCh37	DELETION	10	42	STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.692:STK11_chr19:g.1193859del	yes	unknown	26815	6720	3148	0	44
P-0076438-T01-IM7	SOMATIC	STK11	STK11	19	19	1189322	1207254	IGR: 16Kb before STK11(+)	Intron of STK11(+):52bp after exon 1		GRCh37	INVERSION	5	3	STK11-intragenic	PRECISE	3to3	STK11 (NM_000455) rearrangement: c.290+52:STK11_chr19:g.1189322inv	yes	unknown	17932	2092	2692	0	3
P-0019436-T02-IM7	SOMATIC	STK11		19	19	1204970	1207034	Promoter of STK11(+):827bp from tx start	Exon 1 of STK11(+)		GRCh37	INVERSION			STK11-intragenic	PRECISE	5to5	STK11 (NM_000455) rearrangement: c.122:STK11_chr19:g.1204970inv			2064	587	934	0	78
P-0021375-T01-IM6	SOMATIC	STK11		19	19	1189248	1223044	IGR: 17Kb before STK11(+)	Exon 8 of STK11(+)		GRCh37	DELETION			STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: chr19:g.1189248_c.981del			33796	19824	10281	0	70
P-0030013-T01-IM6	SOMATIC	STK11		19	4	1206948	115304519	Exon 1 of STK11(+)	IGR: 215Kb before UGT8(+)		GRCh37	TRANSLOCATION			STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) Rearrangement : t(4,19)(q26; p13.3)(chr4:g.115304519::chr19:g.1206948)			0	0	0	0	31
P-0055173-T02-IM6	SOMATIC	STK11		19	19	1138510	1226384	Intron of SBNO2(-):9Kb after exon 4	Intron of STK11(+):68bp before exon 9		GRCh37	DELETION			STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.1109-69:STK11_chr19:g.1138510del			87874	13417	16066	0	38
P-0061462-T01-IM7	SOMATIC	STK11		19	17	1221275	33451024	Exon 6 of STK11(+)	Intron of FNDC8(+):2Kb after exon 1		GRCh37	TRANSLOCATION			STK11-intragenic	PRECISE	5to5	STK11 (NM_000455) rearrangement: t(17;19)(q12;p13.3)(chr17:g.33451024::chr19:g.1221275)			0	0	0	0	52
P-0067056-T02-IM7	SOMATIC	STK11		19	19	1154571	1218502	5-UTR of SBNO2(-):46Kb before coding start	Intron of STK11(+):3bp after exon 2		GRCh37	DELETION			STK11-intragenic	PRECISE	3to5	STK11 (NM_000455) rearrangement: c.374+3:STK11_chr19:g.1154571del			63931	4450	2841	0	37
P-0083424-T01-IM7	SOMATIC	STK11		19	19	1198800	1222952	IGR: 7Kb before STK11(+)	Intron of STK11(+):31bp before exon 8		GRCh37	INVERSION			STK11-intragenic	PRECISE	5to5	STK11 (NM_000455) rearrangement: c.921-32:STK11_chr19:g.1198800inv			24152	9361	15538	0	22
P-0002758-T01-IM3	SOMATIC	STK11	MIDN	19	19	1219420	1249122	Intron of STK11(+): 8bp after exon 3	5-UTR of MIDN(+): 1Kb before coding start		GRCh37	DELETION	28	10	Transcript fusion (STK11-MIDN)	PRECISE	3to5		yes	unknown	29702	7150	4686	0	11
P-0043250-T01-IM6	SOMATIC	STK19	STK19	6	6	31948330	31981147	Intron of STK19(+):5bp after exon 6	Promoter of STK19(+):370bp from tx start		GRCh37	DELETION	10	38	Deletion within transcript	PRECISE	3to5	STK19 (NM_004197) rearrangement: c.901+5:STK19_chr6:g.31981147del	yes	unknown	32817	1029	847	68	80
P-0039853-T01-IM6	SOMATIC	STK19		6	6	31948359	31981147	Intron of STK19(+):34bp after exon 6	Promoter of STK19(+):370bp from tx start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	STK19 (NM_004197) rearrangement: c.901+34:STK19_chr6:g.31981147del			32788	1052	1669	85	168
P-0061731-T01-IM7	SOMATIC	STK19	STK19	19	6	6088880	31947212	5-UTR of RFX2(-):94Kb before coding start	Exon 5 of STK19(+)		GRCh37	TRANSLOCATION	0	16	Protein Fusion: mid-exon  {RFX2:STK19}	IMPPRECISE	5to5	STK19 (NM_004197) rearrangement: t(6;19)(p21.33;p13.3)(chr6:g.31947212::chr19:g.6088880)	yes	unknown	0	0	0	0	19
P-0077073-T02-IM7	SOMATIC	STK19	STK19	6	6	31907656	31940226	Intron of C2(+):559bp after exon 7	Exon 2 of STK19(+)		GRCh37	DUPLICATION	10	34	Protein Fusion: mid-exon  {STK19:C2}	PRECISE	5to3	STK19 (NM_004197) - C2 (NM_000063) rearrangement: c.368:STK19_c.1219+559:C2dup	yes	unknown	32570	2705	5224	0	38
P-0068718-T01-IM7	SOMATIC	STK40	CSF3R	1	1	36812974	36938081	Intron of STK40(-):1Kb after exon 8	Intron of CSF3R(-):36bp after exon 7		GRCh37	DUPLICATION	9	7	Protein Fusion: out of frame  {STK40:CSF3R}	PRECISE	5to3	STK40 (NM_032017) - CSF3R (NM_000760) rearrangement: c.739+1327:STK40_c.843+37:CSF3Rdup	yes	unknown	125107	19743	31560	0	7
P-0048102-T03-IM6	SOMATIC	STRN	ALK	2	2	29447056	37140460	Intron of ALK(-):662bp before exon 20	Intron of STRN(-):3Kb after exon 3		GRCh37	DELETION	10	27	Protein Fusion: in frame  {STRN:ALK}	PRECISE	3to5	STRN (NM_003162) - ALK (NM_004304) fusion: c.412+2761:STRN_c.3173-662:ALKdel	yes	unknown	7693404	69682	43770	0	29
P-0075800-T02-IM7	SOMATIC	STRN	ALK	2	2	29447803	37133692	Intron of ALK(-):523bp after exon 19	Intron of STRN(-):931bp before exon 4		GRCh37	DELETION	10	73	Protein Fusion: in frame  {STRN:ALK}	PRECISE	3to5	STRN (NM_003162) - ALK (NM_004304) fusion: c.413-931:STRN_c.3172+524:ALKdel	yes	unknown	7685889	64815	95957	0	102
P-0033066-T01-IM6	SOMATIC	STRN	ALK	2	2	29448365	37133845	Exon 19 of ALK(-)	Intron of STRN(-):1Kb before exon 4		GRCh37	DELETION	10	71	Protein Fusion: mid-exon  {STRN:ALK}	PRECISE	3to5	STRN (NM_003162) - ALK (NM_004304) fusion( STRN exons 1-3 fused to ALK exons 19-29): c.413-1084:STRN_c.3134:ALKdel	yes	unknown	7685480	48833	45642	0	83
P-0048102-T03-IM6	SOMATIC	STRN	ALK								GRCh37				STRN-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: STRN-ALK fusion. Note: The rearrangement is an in-frame fusion between genes STRN Exon3 (NM_003162) and ALK Exon20 (NM_004304).	yes	unknown					
P-0033066-T01-IM6	SOMATIC	STRN	ALK								GRCh37				STRN-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: STRN-ALK fusion. Note: The rearrangement is an in-frame fusion between genes STRN Exon3 (NM_003162) and ALK Exon20 (NM_004304).	yes	unknown					
P-0021124-T01-IM6	SOMATIC	STRN	NTRK2								GRCh37				STRN-NTRK2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: STRN-NTRK2 fusion. Note: The rearrangement is an in-frame fusion between genes STRN Exon3 (NM_003162) and NTRK2 Exon16 (NM_006180).	yes	unknown					
P-0016785-T01-IM6	SOMATIC	STXBP2	STK11	19	19	1218399	7708193	Intron of STK11(+):16bp before exon 2	Intron of STXBP2(+):62bp after exon 13		GRCh37	DUPLICATION			Protein Fusion: out of frame  {STXBP2:STK11}	PRECISE	5to3	STXBP2 (NM_006949) - STK11 (NM_000455)  rearrangement: c.1107+62:STXBP2_c.291-17:STK11dup			6489794	233914	286162	0	26
P-0077488-T01-IM7	SOMATIC	STXBP3	CDK8	13	1	26978137	109307225	Exon 13 of CDK8(+)	Intron of STXBP3(+):5Kb after exon 6		GRCh37	TRANSLOCATION	10	16	Protein Fusion: mid-exon  {STXBP3:CDK8}	PRECISE	5to3	STXBP3 (NM_007269) - CDK8 (NM_001260) rearrangement: t(1;13)(p13.3;q12.13)(chr1:g.109307225::chr13:g.26978137)	yes	unknown	0	0	0	0	17
P-0003819-T01-IM5	SOMATIC	SUFU	TRIM8	10	10	104386863	104409596	Intron of SUFU(+): 69bp before exon 11	Intron of TRIM8(+): 5Kb after exon 1		GRCh37	DUPLICATION	42	35	Protein fusion: in frame (TRIM8-SUFU)	PRECISE	5to3	TRIM8 (NM_030912) - SUFU (NM_016169) rearrangement : c.570+4652:TRIM8_c.1297-69:SUFUdup	yes	unknown	22733	3490	6731	0	47
P-0016171-T01-IM6	SOMATIC	SUFU		10	10	102943066	104359256	5-UTR of LINC01514(+):11Kb before coding start	Exon 8 of SUFU(+)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {SUFU:LINC01514}	PRECISE	5to3	SUFU (NM_016169) rearrangement: g.102943066_c.977:SUFUdup			1416190	11843	17080	0	21
P-0038428-T01-IM6	SOMATIC	SUFU	SUFU	10	10	102987961	104359167	Intron of LBX1(-):286bp after exon 1	Intron of SUFU(+):22bp before exon 8		GRCh37	DELETION	6	3	SUFU-intragenic	PRECISE	3to5	SUFU (NM_016169) rearrangement: c.911-23:SUFU_chr10:g.102987961del	yes	unknown	1371206	15225	17039	0	3
P-0065407-T01-IM7	SOMATIC	SUFU	LINC00959	10	10	104268947	131857574	Exon 2 of SUFU(+)	IGR: 5Kb before LINC00959(-)		GRCh37	INVERSION	6	2	SUFU-intragenic	PRECISE	5to5	SUFU (NM_016169) rearrangement: c.204:SUFU_chr10:g.131857574inv	yes	unknown	27588627	196084	258450	0	2
P-0045809-T02-IM6	SOMATIC	SUFU		10	3	104389884	85786435	Exon 12 of SUFU(+)	Intron of CADM2(+):65Kb before exon 2		GRCh37	TRANSLOCATION			SUFU-intragenic	PRECISE	5to5	SUFU (NM_016169) rearrangement: t(3;10)(p12.1;q24.32)(chr3:g.85786435::chr10:g.104389884)			0	0	0	0	6
P-0034605-T01-IM6	SOMATIC	SUGP1	BRD4	19	19	15367031	19408092	Exon 9 of BRD4(-)	Exon 8 of SUGP1(-)		GRCh37	DELETION	10	16	Protein Fusion: mid-exon  {SUGP1:BRD4}	PRECISE	3to5	SUGP1 (NM_172231) - BRD4 (NM_058243) rearrangement: c.949:SUGP1_c.1595:BRD4del	yes	unknown	4041061	184670	253198	0	16
P-0005824-T01-IM5	SOMATIC	SUPT4H1	RNF43	17	17	56427277	56434771	Intron of SUPT4H1(-): 1Kb after exon 2	Intron of RNF43(-): 58bp after exon 9		GRCh37	DUPLICATION	68	40	Protein fusion: out of frame (SUPT4H1-RNF43)	PRECISE	5to3	SUPT4H1 (NM_003168) - RNF43 (NM_017763) rearrangement event : :SUPT4H1_:RNF43dup	yes	unknown	7494	4933	6049	0	40
P-0033924-T01-IM6	SOMATIC	SUZ12		17	17	30264646	34136244	Intron of SUZ12(+):107bp after exon 1	Promoter of TAF15(+):214bp from tx start		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	SUZ12 (NM_015355) rearrangement: c.274+107_chr17:g.34136244inv			3871598	41717	77270	0	35
P-0084662-T02-IM7	SOMATIC	SUZ12		17	17	30304634	30315200	Intron of SUZ12(+):1Kb after exon 8	Intron of SUZ12(+):138bp before exon 10		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	SUZ12 (NM_015355) rearrangement: c.917+1001_c.1024-139del			10566	345	328	0	13
P-0048907-T01-IM6	SOMATIC	SUZ12	SHISA6	17	17	11363648	30323950	Intron of SHISA6(+):81Kb after exon 3	Intron of SUZ12(+):54bp after exon 15		GRCh37	DUPLICATION	10	23	Protein Fusion: out of frame  {SUZ12:SHISA6}	PRECISE	5to3	SUZ12 (NM_015355) - SHISA6 (NM_207386) rearrangement: c.1874+54:SUZ12_c.895+80822:SHISA6dup	yes	unknown	18960302	174928	279878	0	26
P-0054150-T01-IM6	SOMATIC	SUZ12	KIF2B	17	17	30302771	52350640	Intron of SUZ12(+):39bp after exon 7	IGR: 450Kb before KIF2B(+)		GRCh37	DELETION	10	29	SUZ12-intragenic	PRECISE	3to5	SUZ12 (NM_015355) rearrangement: c.823+39:SUZ12_chr17:g.52350640del	yes	unknown	22047869	533447	747027	0	50
P-0020702-T01-IM6	SOMATIC	SUZ12		17	17	30302430	65717654	Intron of SUZ12(+):70bp before exon 7	Intron of NOL11(+):12bp after exon 4		GRCh37	INVERSION			SUZ12-intragenic	PRECISE	5to5	SUZ12 (NM_015355) rearrangement: c.592-71_g.65717654inv			35415224	918551	843997	0	6
P-0058859-T01-IM7	SOMATIC	SUZ12		17	17	28067931	30322580	Intron of SSH2(-):38Kb before exon 3	Intron of SUZ12(+):2bp before exon 14		GRCh37	DELETION			SUZ12-intragenic	PRECISE	3to5	SUZ12 (NM_015355) rearrangement: c.1596-3:SUZ12_chr17:g.28067931del			2254649	122764	113159	0	14
P-0085318-T02-IM7	SOMATIC	SYBU	BRAF	8	7	110587348	140494849	Exon 6 of SYBU(-)	Intron of BRAF(-):582bp before exon 8		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {SYBU:BRAF}	PRECISE	5to3	SYBU (NM_001099754) - BRAF (NM_004333) fusion: t(7;8)(q34;q23.2)(chr7:g.140494849::chr8:g.110587348)			0	0	0	0	78
P-0085754-T01-IM7	SOMATIC	SYK		9	9	93603989	93650161	5-UTR of SYK(+):2Kb before coding start	Exon 12 of SYK(+)		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	SYK (NM_003177) rearrangement: c.1712:SYK_chr9:g.93603989inv			46172	16096	29386	0	54
P-0089490-T01-IM7	SOMATIC	SYK	VTA1	9	6	93629409	142510118	Intron of SYK(+):3bp before exon 7	Intron of VTA1(+):444bp before exon 4		GRCh37	TRANSLOCATION			Protein Fusion: in frame  {SYK:VTA1}	PRECISE	3to5	SYK (NM_003177) - VTA1 (NM_016485) rearrangement: t(6;9)(q24.1;q22.2)(chr6:g.142510118::chr9:g.93629409)			0	0	0	0	42
P-0057842-T01-IM6	SOMATIC	SYK	C9or	9	9	93606437	96116053	Exon 2 of SYK(+)	IGR: 36Kb before C9orf129(-)		GRCh37	INVERSION	10	37	SYK-intragenic	PRECISE	5to5	SYK (NM_003177) rearrangement: c.257:SYK_chr9:g.96116053inv	yes	unknown	2509616	17673	21687	0	45
P-0020165-T01-IM6	SOMATIC	SYMPK	CD79A	19	19	42383071	46326866	Exon 2 of CD79A(+)	Intron of SYMPK(-):136bp before exon 20		GRCh37	INVERSION			Protein Fusion: mid-exon  {SYMPK:CD79A}	PRECISE	5to5	SYMPK (NM_004819) - CD79A (NM_001783) rearrangement: c.2600-136:SYMPK_c.91:CD79Ainv			3943795	131590	205844	0	53
P-0023014-T01-IM6	SOMATIC	SYNGR3	TSC2	16	16	2040648	2112559	Intron of SYNGR3(+):446bp after exon 1	Exon 13 of TSC2(+)		GRCh37	DUPLICATION	8	3	Protein Fusion: mid-exon  {TSC2:SYNGR3}	PRECISE	5to3	TSC2 (NM_000548) - SYNGR3 (NM_004209) rearrangement: c.1319:TSC2_c.99+446:SYNGR3dup	yes	unknown	71911	38530	44166	0	3
P-0010965-T02-IM6	SOMATIC	SYS1	NCOA3	20	20	43996497	46275932	Intron of SYS1(+):2Kb after exon 3	Exon 18 of NCOA3(+)		GRCh37	INVERSION	10	24	Antisense Fusion	PRECISE	3to3	NCOA3 (NM_181659) rearrangement: c.3368:NCOA3_chr20:g.43996497inv	yes	unknown	2279435	21934	29101	0	23
P-0037029-T01-IM6	SOMATIC	SYT16	AKT1	14	14	62562584	105246431	Intron of SYT16(+):5Kb before exon 6	Exon 3 of AKT1(-)		GRCh37	INVERSION	10	34	Protein Fusion: mid-exon  {SYT16:AKT1}	PRECISE	3to3	SYT16 (NM_031914) - AKT1 (NM_001014431) rearrangement: c.1625-4528:SYT16_c.169:AKT1inv	yes	unknown	42683847	150651	161490	0	34
P-0040889-T01-IM6	SOMATIC	TACC1	FGFR1								GRCh37				TACC1-FGFR1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TACC1-FGFR1 fusion. Note: The rearrangement is predicted to be an in-frame fusion between genes TACC1 Exon1 (NM_001146216) and FGFR1 Exon2 (NM_015850).	yes	unknown					
P-0015984-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737391	1809007	Intron of TACC3(+):66bp before exon 8	3-UTR of FGFR3(+):13Kb after coding stop		GRCh37	DUPLICATION	0	5	FGFR3-TACC3 fusion	IMPPRECISE	5to3	TACC3 (NM_006342) - FGFR3 (NM_000142) Rearrangement : c.1645-67:TACC3_c.*18:FGFR3dup	yes	unknown	71616	29923	46056	0	5
P-0014530-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1732847	1808715	Intron of TACC3(+): 52bp before exon 6	Intron of FGFR3(+): 54bp after exon 17		GRCh37	DUPLICATION	23	18	Protein fusion: in frame (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion (FGFR3 exons 1-17 fused with TACC3 exons 6-16) : c.2274+54:FGFR3_c.1462-52:TACC3dup	yes	unknown	75868	54881	48243	0	17
P-0012373-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739255	1808730	Intron of TACC3(+): 70bp before exon 10	Intron of FGFR3(+): 69bp after exon 17		GRCh37	DUPLICATION	25	33	Protein fusion: in frame (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 with TACC3 exons 10-16 ): c.2274+69:FGFR3_c.1837-70:TACC3dup	yes	unknown	69475	28715	28324	0	32
P-0007131-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739228	1808764	Intron of TACC3(+): 97bp before exon 10	Intron of FGFR3(+): 79bp before exon 18		GRCh37	DUPLICATION	22	18	Protein fusion: in frame (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 with TACC3 exons 10-16) : c.2275-79:FGFR3_c.1837-97:TACC3dup	yes	unknown	69536	20757	21104	0	17
P-0015195-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737430	1808757	Intron of TACC3(+): 28bp before exon 8	Intron of FGFR3(+): 86bp before exon 18		GRCh37	DUPLICATION	25	32	Protein fusion: in frame (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exon17 fused to TACC3 exon8): c.2275-86:FGFR3_c.1645-28:TACC3dup	yes	unknown	71327	48685	61511	0	31
P-0002351-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1737028	1808871	Exon 7 of TACC3(+)	Exon 18 of FGFR3(+)		GRCh37	DUPLICATION	47	21	Protein fusion: mid-exon (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142)  and TACC3 (NM_006342) duplication (71843bp):  FGFR3:c.2303_TACC3:c.1620dup	yes	unknown	71843	34321	42233	0	22
P-0000289-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1735129	1806109	Intron of TACC3(+): 2Kb before exon 7	Exon 9 of FGFR3(+)		GRCh37	DUPLICATION	21	12	Protein fusion: mid-exon (FGFR3-TACC3)	PRECISE	5to3	FGFR3 (NM_000142)  TACC3 (NM_006342) Duplication (c.1128_c.1592-1871dup)	yes	unknown	70980	10007	9020	0	13
P-0004934-T01-IM5	SOMATIC	TAOK1	NF1	17	17	27793394	29527419	Intron of TAOK1(+): 769bp before exon 3	Intron of NF1(+): 21bp before exon 9		GRCh37	DELETION	4	5	Protein fusion: in frame (TAOK1-NF1)	PRECISE	3to5	TAOK1 (NM_020791) - NF1 (NM_001042492) rearrangement : c.133-769:TAOK1_c.889-21:NF1del	yes	unknown	1734025	19477	22841	0	5
P-0020627-T01-IM6	SOMATIC	TAP1	SASH1	6	6	32815768	148725771	Exon 8 of TAP1(-)	Intron of SASH1(+):14Kb after exon 2		GRCh37	DUPLICATION	10	73	Antisense Fusion	PRECISE	5to3	TAP1 (NM_000593) rearrangement: c.1848_g.148725771dup	yes	unknown	115910003	629390	448017	0	120
P-0016625-T01-IM6	SOMATIC	TAP1	TAP1	6	6	32818967	32821124	Intron of TAP1(-):41bp before exon 4	Exon 1 of TAP1(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	TAP1 (NM_000593) rearrangement: c.1025-41_c.470del	yes	unknown	2157	7547	15337	0	23
P-0038369-T01-IM6	SOMATIC	TAP1	TAP1	6	6	27816456	32821162	IGR: 10Kb before HIST1H2BN(+)	Exon 1 of TAP1(-)		GRCh37	INVERSION	10	50	TAP1-intragenic	PRECISE	5to5	TAP1 (NM_000593) rearrangement: c.432:TAP1_chr6:g.27816456inv	yes	unknown	5004706	280271	341665	0	61
P-0015600-T01-IM6	SOMATIC	TAP1		6	6	32813321	33152555	3-UTR of TAP1(-): 35bp after coding stop	Intron of COL11A2(-): 214bp after exon 6		GRCh37	DUPLICATION			TAP1-intragenic	PRECISE	5to3	TAP1 (NM_000593) Rearrangement : c.*35:TAP1_c.939+214:COL11A2dup			339234	40171	46038	0	62
P-0041386-T01-IM6	SOMATIC	TAP2	TAP2	6	6	27423075	32796607	Intron of ZNF184(-):2Kb after exon 5	Intron of TAP2(-):569bp after exon 11		GRCh37	INVERSION	0	6	Antisense Fusion	IMPPRECISE	5to5	TAP2 (NM_018833) rearrangement: c.1932+570:TAP2_chr6:g.27423075inv	yes	unknown	5373532	244664	408125	0	6
P-0038589-T01-IM6	SOMATIC	TAP2	TAP2	6	6	32801727	32803114	Intron of TAP2(-):1Kb before exon 6	Exon 5 of TAP2(-)		GRCh37	DUPLICATION	10	16	Duplication within transcript : mid-exon	PRECISE	5to3	TAP2 (NM_018833) Rearrangement : c.762_c.946-1126dup	yes	unknown	1387	1449	1553	0	17
P-0021290-T01-IM6	SOMATIC	TAP2		6	6	32764970	32802920	IGR: 16Kb before HLA-DOB(-)	Intron of TAP2(-):10bp after exon 5		GRCh37	INVERSION			TAP2-intragenic	IMPPRECISE	5to5	TAP2 (NM_018833) rearrangement: g.32764970_c.945+11inv			37950	17370	11123	0	29
P-0025988-T01-IM6	SOMATIC	TBC1D10C	CCND1	11	11	67175484	69456082	Intron of TBC1D10C(+):965bp before exon 9	Exon 1 of CCND1(+)		GRCh37	DELETION			Protein Fusion: mid-exon  {TBC1D10C:CCND1}	PRECISE	3to5	TBC1D10C (NM_198517) - CCND1 (NM_053056) fusion (TBC1D10C exons 1-8 with CCND1 exons 1-5): c.839-966TBC1D10C_c.1CCND1del.			2280598	23699	46567	0	83
P-0040579-T01-IM6	SOMATIC	TBC1D24	TSC2	16	16	2131633	2549287	Exon 31 of TSC2(+)	Intron of TBC1D24(+):70bp before exon 5		GRCh37	DUPLICATION	10	12	Protein Fusion: mid-exon  {TBC1D24:TSC2}	PRECISE	5to3	TBC1D24 (NM_001199107) - TSC2 (NM_000548) rearrangement: c.1143-71:TBC1D24_c.3648:TSC2dup	yes	unknown	417654	69010	50863	0	13
P-0041371-T01-IM6	SOMATIC	TBKBP1	CDK12	17	17	37648975	45778439	Intron of CDK12(+):28bp before exon 4	Intron of TBKBP1(+):1Kb after exon 6		GRCh37	DUPLICATION	0	6	Protein Fusion: in frame  {TBKBP1:CDK12}	IMPPRECISE	5to3	TBKBP1 (NM_014726) - CDK12 (NM_016507) rearrangement: c.872+1376:TBKBP1_c.2109-29:CDK12dup	yes	unknown	8129464	325491	394297	0	6
P-0047490-T01-IM6	SOMATIC	TBL1XR1	PIK3CA								GRCh37				TBL1XR1-PIK3CA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TBL1XR1-PIK3CA fusion. Note: The rearrangement is an in-frame fusion between genes TBL1XR1 Exon2 (NM_024665) and PIK3CA Exon2 (NM_006218).	yes	unknown					
P-0057027-T01-IM6	SOMATIC	TBL1XR1	PIK3CA								GRCh37				TBL1XR1-PIK3CA Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TBL1XR1-PIK3CA fusion. Note: The rearrangement is an in-frame fusion between genes TBL1XR1 Exon1 (NM_024665) and PIK3CA Exon2 (NM_006218).  Note: Though detected with  low read support, this fusion has been previously described: PMID: 25204415.	yes	unknown					
P-0076189-T01-IM7	SOMATIC	TBX3	TBX3	12	12	112388107	115120735	Intron of TMEM116(-):7Kb before exon 5	Exon 1 of TBX3(-)		GRCh37	INVERSION	10	4	Antisense Fusion	PRECISE	5to5	TBX3 (NM_016569) rearrangement: c.271:TBX3_chr12:g.112388107inv	yes	unknown	2732628	29234	76346	0	6
P-0032154-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115120826	115122356	Exon 1 of TBX3(-)	Promoter of TBX3(-):14Kb from tx start		GRCh37	DELETION	6	4	Deletion within transcript : mid-exon	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.180:TBX3_chr12:g.115122356del	yes	unknown	1530	881	724	0	4
P-0052121-T01-IM6	SOMATIC	TBX3		12	12	115112020	115122501	Exon 7 of TBX3(-)	Promoter of TBX3(-):14Kb from tx start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.1720:TBX3_chr12:g.115122501del			10481	12289	10354	0	8
P-0049183-T01-IM6	SOMATIC	TBX3		12	12	115114531	115115604	Intron of TBX3(-):256bp before exon 6	Intron of TBX3(-):143bp before exon 5		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	TBX3 (NM_016569) rearrangement: c.865-143_c.942-256dup			1073	1235	1741	0	9
P-0052121-T01-IM6	SOMATIC	TBX3		12	9	115109985	14323800	Exon 8 of TBX3(-)	Intron of NFIB(-):16Kb before exon 2		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {TBX3:NFIB}	PRECISE	5to3	TBX3 (NM_016569) rearrangement: t(9;12)(p22.3;q24.21)(chr9:g.14323800::chr12:g.115109985)			0	0	0	0	15
P-0051908-T01-IM6	SOMATIC	TBX3	TACC1	12	8	115109963	38647047	Exon 8 of TBX3(-)	Intron of TACC1(+):710bp after exon 2		GRCh37	TRANSLOCATION	10	36	Protein Fusion: mid-exon  {TBX3:TACC1}	PRECISE	5to5	TBX3 (NM_016569) - TACC1 (NM_006283) rearrangement: t(8;12)(p11.22;q24.21)(chr8:g.38647047::chr12:g.115109963)	yes	unknown	0	0	0	0	48
P-0015742-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115117497	115489107	Intron of TBX3(-): 41bp before exon 3	IGR: 381Kb before TBX3(-)		GRCh37	DELETION	39	27	TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: chr12:g.115489107_c.718-41del	yes	unknown	371610	7538	4162	0	27
P-0051910-T01-IM6	SOMATIC	TBX3	DNAH10	12	12	115120794	124271972	Exon 1 of TBX3(-)	Intron of DNAH10(+):378bp before exon 10		GRCh37	DELETION	10	7	TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.212:TBX3_chr12:g.124271972del	yes	unknown	9151178	66016	63320	0	7
P-0054998-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115115437	115188747	Exon 5 of TBX3(-)	IGR: 81Kb before TBX3(-)		GRCh37	DELETION	10	16	TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.889:TBX3_chr12:g.115188747del	yes	unknown	73310	8243	10154	0	17
P-0060600-T01-IM7	SOMATIC	TBX3	MED13L	12	12	115112542	116235237	Exon 7 of TBX3(-)	IGR: 161Kb before MED13L(-)		GRCh37	DELETION	0	60	TBX3-intragenic	IMPPRECISE	3to5	TBX3 (NM_016569) rearrangement: c.1198:TBX3_chr12:g.116235237del	yes	unknown	1122695	15546	15905	0	64
P-0040126-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115118868	115140428	Exon 2 of TBX3(-)	IGR: 32Kb before TBX3(-)		GRCh37	DELETION	10	48	TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.473:TBX3_chr12:g.115140428del	yes	unknown	21560	3587	3579	0	48
P-0045237-T01-IM6	SOMATIC	TBX3	MED13L	12	12	115112475	116583171	Exon 7 of TBX3(-)	Intron of MED13L(-):34Kb before exon 3		GRCh37	INVERSION	10	10	TBX3-intragenic	PRECISE	3to3	TBX3 (NM_016569) rearrangement: c.1265:TBX3_chr12:g.116583171inv	yes	unknown	1470696	12508	14034	0	10
P-0063728-T01-IM7	SOMATIC	TBX3	TBX3	12	12	115117897	115121502	Intron of TBX3(-):120bp before exon 3	5-UTR of TBX3(-):12Kb before coding start		GRCh37	INVERSION	10	23	TBX3-intragenic	PRECISE	3to3	TBX3 (NM_016569) rearrangement: c.658-120:TBX3_chr12:g.115121502inv	yes	unknown	3605	9064	10823	0	23
P-0069200-T01-IM7	SOMATIC	TBX3	FAM8A1	12	6	115120622	17561879	Exon 1 of TBX3(-)	IGR: 39Kb before FAM8A1(+)		GRCh37	TRANSLOCATION	10	40	TBX3-intragenic	PRECISE	5to5	TBX3 (NM_016569) rearrangement: t(6;12)(p22.3;q24.21)(chr6:g.17561879::chr12:g.115120622)	yes	unknown	0	0	0	0	47
P-0021751-T01-IM6	SOMATIC	TBX3		14	12	86219398	115110076	IGR: 182Kb before LOC101928767(+)	Exon 8 of TBX3(-)		GRCh37	TRANSLOCATION			TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: t(12;14)(q24.21;q31.3)(chr12:g.115110076::chr14:g.86219398)			0	0	0	0	10
P-0028344-T01-IM6	SOMATIC	TBX3		12	12	115114257	116070739	Exon 6 of TBX3(-)	IGR: 326Kb before MED13L(-)		GRCh37	DELETION			TBX3-intragenic	PRECISE	3to5	TBX3 (NM_016569) rearrangement: c.960:TBX3_chr12:g.116070739del			956482	7268	12070	0	81
P-0020845-T02-IM6	SOMATIC	TCEB1		18	8	4459373	74859058	IGR: 195Kb before DLGAP1-AS5(+)	Intron of TCEB1(-):3bp before exon 4		GRCh37	TRANSLOCATION			TCEB1-intragenic	PRECISE	3to3	TCEB1 (NM_005648) rearrangement: t(8;18)(q21.11;p11.31)(chr8:g.74859058::chr18:g.4459373)			0	0	0	0	49
P-0051780-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1058110	1619340	Intron of ABCA7(+):34bp before exon 37	Exon 14 of TCF3(-)		GRCh37	DELETION	10	14	Antisense Fusion	PRECISE	3to5	TCF3 (NM_001136139) rearrangement: c.1301_c.5026-35del	yes	unknown	561230	28596	38002	0	14
P-0026691-T01-IM6	SOMATIC	TCF3	CDKN2A	19	9	1619713	21972496	Intron of TCF3(-):3Kb before exon 6	Intron of CDKN2Ap16INK4A(-):1kb before exon 2		GRCh37	TRANSLOCATION	10	65	CDKN2Ap16INK4A-TCF3 fusion	PRECISE	5to3	TCF3 (NM_001136139) - CDKN2Ap16INK4A (NM_000077) rearrangement:t(9;19)(chr9:g.21972496::chr19:g.1619713)	yes	unknown	0	0	0		
P-0004759-T01-IM5	SOMATIC	TCF3		19	19	1615369	1624051	Exon 18 of TCF3(-)	Intron of TCF3(-): 52bp before exon 7		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	TCF3 (NM_001136139) rearrangement : c.500-52_1586+316del			8682	21586	9639	0	14
P-0057597-T01-IM6	SOMATIC	TCF3	FBRSL1	19	12	1623791	133117068	Intron of TCF3(-):158bp after exon 7	Intron of FBRSL1(+):8Kb before exon 5		GRCh37	TRANSLOCATION	10	6	Protein Fusion: in frame  {TCF3:FBRSL1}	PRECISE	5to5	TCF3 (NM_001136139) - FBRSL1 (NM_001142641) rearrangement: t(12;19)(q24.33;p13.3)(chr12:g.133117068::chr19:g.1623791)	yes	unknown	0	0	0	0	8
P-0048063-T01-IM6	SOMATIC	TCF3	SBNO2	19	19	1153109	1650224	Intron of SBNO2(-):1Kb after exon 2	Exon 1 of TCF3(-)		GRCh37	DELETION	0	13	Protein Fusion: mid-exon  {TCF3:SBNO2}	IMPPRECISE	3to5	TCF3 (NM_001136139) - SBNO2 (NM_014963) rearrangement: c.24:TCF3_c.93+1074:SBNO2del	yes	unknown	497115	60783	43930	0	14
P-0088996-T02-IM7	SOMATIC	TCF3	ATP8B3	19	19	1625448	1811192	Intron of TCF3(-):126bp after exon 6	Intron of ATP8B3(-):295bp after exon 2		GRCh37	DUPLICATION			Protein Fusion: out of frame  {TCF3:ATP8B3}	PRECISE	5to3	TCF3 (NM_001136139) - ATP8B3 (NM_001178002) rearrangement: c.499+127:TCF3_c.89+296:ATP8B3dup			185744	8471	18811	0	35
P-0019727-T01-IM6	SOMATIC	TCF3		19	19	1627426	7615432	Intron of TCF3(-):1bp before exon 5	Exon 19 of PNPLA6(+)		GRCh37	DELETION			TCF3-intragenic	PRECISE	3to5	TCF3 (NM_001136139) rearrangement: c.299-1_g.7615432del			5988006	289819	381481	0	105
P-0072370-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	78127963	114889667	Intron of C10orf11(+):44Kb after exon 5	Intron of TCF7L2(+):11Kb before exon 6		GRCh37	INVERSION	10	16	Antisense Fusion	PRECISE	3to3	TCF7L2 (NM_001146274) rearrangement: c.553-11276:TCF7L2_chr10:g.78127963inv	yes	unknown	36761704	200297	153869	0	16
P-0062258-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114916366	114919610	Intron of TCF7L2(+):1Kb before exon 12	Intron of TCF7L2(+):767bp before exon 13		GRCh37	DELETION	10	19	Deletion of 1 exon : out of frame	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.1270-1414_c.1319-768del	yes	unknown	3244	2795	3256	0	19
P-0006136-T01-IM5	SOMATIC	TCF7L2	TCF7L2	10	10	114905949	114921370	Intron of TCF7L2(+): 93bp after exon 7	Intron of TCF7L2(+): 920bp after exon 13		GRCh37	DELETION	19	17	Deletion of 6 exons: in frame	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.875+93_c.1391+920del	yes	unknown	15421	20856	18862	0	17
P-0066779-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114799883	114919820	Exon 5 of TCF7L2(+)	Intron of TCF7L2(+):557bp before exon 13		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.550_c.1319-558del	yes	unknown	119937	16260	10242	0	14
P-0030471-T01-IM6	SOMATIC	TCF7L2		10	10	114909810	114910818	Intron of TCF7L2(+):946bp before exon 9	Exon 9 of TCF7L2(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.876-947_c.937del			1008	760	1069	0	9
P-0068270-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114903792	114923376	Intron of TCF7L2(+):8bp after exon 7	Intron of TCF7L2(+):2Kb before exon 14		GRCh37	DUPLICATION	10	4	Duplication of 6 exons : in frame	PRECISE	5to3	TCF7L2 (NM_001146274) rearrangement: c.788+8_c.1392-1938dup	yes	unknown	19584	11695	10799	0	4
P-0045713-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114813082	114918483	Intron of TCF7L2(+):13Kb after exon 5	Intron of TCF7L2(+):655bp after exon 12		GRCh37	DUPLICATION	6	5	Duplication of 7 exons : out of frame	PRECISE	5to3	TCF7L2 (NM_001146274) rearrangement: c.552+13197_c.1318+655dup	yes	unknown	105401	8964	9942	0	5
P-0028143-T01-IM6	SOMATIC	TCF7L2	FAM204A	10	10	114912160	120075005	Exon 11 of TCF7L2(+)	Intron of FAM204A(-):4Kb before exon 7		GRCh37	INVERSION	10	45	Protein Fusion: mid-exon  {FAM204A:TCF7L2}	PRECISE	5to5	FAM204A (NM_001134672) - TCF7L2 (NM_001146274) rearrangement: c.544-4180:FAM204A_c.1230:TCF7L2	yes	unknown	5162845	15207	21253	0	50
P-0021177-T01-IM6	SOMATIC	TCF7L2	HABP2	10	10	114918419	115131344	Intron of TCF7L2(+):591bp after exon 12	IGR: 179Kb before HABP2(+)		GRCh37	DELETION	10	16	TCF7L2-intragenic	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.1318+591:TCF7L2_chr10:g.115131344del	yes	unknown	212925	10853	8104	0	16
P-0045280-T01-IM6	SOMATIC	TCF7L2	LOC101927692	10	10	114919874	116507504	Intron of TCF7L2(+):503bp before exon 13	IGR: 17Kb before LOC101927692(+)		GRCh37	DELETION	10	18	TCF7L2-intragenic	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.1319-504:TCF7L2_chr10:g.116507504del	yes	unknown	1587630	9103	5310	0	21
P-0065425-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	89514847	114889339	Intron of ATAD1(-):283bp before exon 10	Intron of TCF7L2(+):12Kb before exon 6		GRCh37	DELETION	10	7	TCF7L2-intragenic	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.553-11604:TCF7L2_chr10:g.89514847del	yes	unknown	25374492	172925	146476	0	7
P-0071776-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114925335	114947489	Exon 14 of TCF7L2(+)	IGR: 237Kb before TCF7L2(+)		GRCh37	DELETION	10	36	TCF7L2-intragenic	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.1413:TCF7L2_chr10:g.114947489del	yes	unknown	22154	1946	1556	0	37
P-0005792-T01-IM5	SOMATIC	TCF7L2		10	10	114724315	127151116	Exon 4 of TCF7L2(+)	IGR: 112Kb before LOC100169752(+)		GRCh37	DUPLICATION			TCF7L2-intragenic	PRECISE	5to3	TCF7L2 (NM_001146274) rearrangement: c.382:TCF7L2_chr10:g.127151116dup			12426801	214725	172301	0	156
P-0023776-T01-IM6	SOMATIC	TCF7L2		10	10	114889529	115137987	Intron of TCF7L2(+):11Kb before exon 6	IGR: 173Kb before HABP2(+)		GRCh37	INVERSION			TCF7L2-intragenic	PRECISE	5to5	TCF7L2 (NM_001146274) rearrangement: c.553-11414_chr10:g.115137987inv			248458	13284	10215	0	4
P-0024249-T01-IM6	SOMATIC	TCF7L2		10	10	114917851	115014274	Intron of TCF7L2(+):23bp after exon 12	IGR: 296Kb before HABP2(+)		GRCh37	DELETION			TCF7L2-intragenic	PRECISE	3to5	TCF7L2 (NM_001146274) rearrangement: c.1318+23_chr10:g.115014274del			96423	10866	4714	0	23
P-0032124-T01-IM6	SOMATIC	TCF7L2	PPP2CA	10	5	114920515	133531112	Intron of TCF7L2(+):65bp after exon 13	Promoter of PPP2CA(-):1Kb from tx start		GRCh37	TRANSLOCATION	10	29	Transcript Fusion {TCF7L2:PPP2CA}	PRECISE	3to3	TCF7L2 (NM_001146274) - PPP2CA (NM_002715) Rearrangement : t(5;10)(q31.1;q25.2)(chr5:g.133531112::chr10:g.114920515)	yes	unknown	0	0	0	0	28
P-0020218-T01-IM6	SOMATIC	TECRL	EPHA5	4	4	65266846	66280062	Intron of TECRL(-):8Kb after exon 1	Exon 7 of EPHA5(-)		GRCh37	DUPLICATION	10	29	Protein Fusion: mid-exon  {TECRL:EPHA5}	PRECISE	5to3	TECRL (NM_001010874) - EPHA5 (NM_004439) rearrangement: c.234+7990:TECRL_c.1627:EPHA5dup	yes	unknown	1013216	16871	26043	0	30
P-0038625-T01-IM6	SOMATIC	TEK	TEK	9	9	27184640	27185578	Intron of TEK(+):842bp before exon 9	Exon 9 of TEK(+)		GRCh37	INVERSION	10	83	Antisense Fusion	PRECISE	3to3	TEK (NM_000459) rearrangement: c.1183-843_c.1278inv	yes	unknown	938	926	1280	0	83
P-0066663-T02-IM7	SOMATIC	TEK	C9or	9	9	27172730	27548766	Exon 5 of TEK(+)	Intron of C9orf72(-):102bp before exon 10		GRCh37	DELETION	10	13	Antisense Fusion	PRECISE	3to5	TEK (NM_000459) rearrangement: c.745:TEK_chr9:g.27548766del	yes	unknown	376036	25437	32992	0	13
P-0082444-T01-IM7	SOMATIC	TEK		12	9	15864975	27202820	5-UTR of EPS8(-):91Kb before coding start	Exon 13 of TEK(+)		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	TEK (NM_000459) rearrangement: t(9;12)(p21.2;p12.3)(chr9:g.27202820::chr12:g.15864975)			0	0	0	0	20
P-0067692-T01-IM7	SOMATIC	TEK	TEK	9	9	27203154	27209483	Intron of TEK(+):37bp after exon 13	Intron of TEK(+):254bp after exon 16		GRCh37	DELETION	10	3	Deletion of 3 exons : in frame	PRECISE	3to5	TEK (NM_000459) rearrangement: c.2209+37_c.2686+254del	yes	unknown	6329	5026	3715	0	3
P-0038013-T01-IM6	SOMATIC	TEK	TEK	9	9	16340059	27169375	IGR: 69Kb before BNC2(-)	Intron of TEK(+):99bp before exon 4		GRCh37	INVERSION	10	34	TEK-intragenic	PRECISE	5to5	TEK (NM_000459) Rearrangment: c.476-100:TEK_chr9:g.16340059inv	yes	unknown	10829316	21110	20747	0	34
P-0038940-T01-IM6	SOMATIC	TEK	EYA1	9	8	27202916	72419718	Exon 13 of TEK(+)	IGR: 310Kb before EYA1(-)		GRCh37	TRANSLOCATION	10	69	TEK-intragenic	PRECISE	3to3	TEK (NM_000459) rearrangement: t(8;9)(q13.3;p21.2)(chr8:g.72419718::chr9:g.27202916)	yes	unknown	0	0	0	0	68
P-0070503-T01-IM7	SOMATIC	TEK	LINC01242	9	9	27190712	31016885	Intron of TEK(+):24bp after exon 10	IGR: 628Kb before LINC01242(-)		GRCh37	INVERSION	4	6	TEK-intragenic	PRECISE	3to3	TEK (NM_000459) rearrangement: c.1489+24:TEK_chr9:g.31016885inv	yes	unknown	3826173	22918	19760	0	6
P-0079387-T02-IM7	SOMATIC	TEK	TEK	9	9	18049979	27158061	IGR: 424Kb before ADAMTSL1(+)	Exon 2 of TEK(+)		GRCh37	DELETION	10	10	TEK-intragenic	PRECISE	3to5	TEK (NM_000459) rearrangement: c.285:TEK_chr9:g.18049979del	yes	unknown	9108082	57102	70036	0	11
P-0032702-T01-IM6	SOMATIC	TEK		X	9	140560188	27217610	IGR: 31Kb before SPANXA2-OT1(+)	Intron of TEK(+):75bp before exon 19		GRCh37	TRANSLOCATION			TEK-intragenic	PRECISE	3to5	TEK (NM_000459) rearrangement: t(9;X)(p21.2;q27.2)(chr9:g.27217610::chrX:g.140560188)			0	0	0	0	14
P-0012792-T02-IM7	SOMATIC	TEK		9	9	21059720	27217584	IGR: 17Kb before IFNB1(-)	Intron of TEK(+):101bp before exon 19		GRCh37	DELETION			TEK-intragenic	PRECISE	3to5	TEK (NM_000459) rearrangement: c.2992-102:TEK_chr9:g.21059720del			6157864	82624	51638	0	56
P-0018397-T01-IM6	SOMATIC	TENM2	ATR	5	3	166988538	142168296	Intron of TENM2(+):186Kb after exon 2	Exon 47 of ATR(-)		GRCh37	TRANSLOCATION	10	7	Protein Fusion: mid-exon  {TENM2:ATR}	PRECISE	3to3	TENM2 (NM_001122679) - ATR () Rearrangement : t(5;3)(q34;q23)(chr5:g.166988538::chr3:g.142168296)	yes	unknown	0	0	0	0	7
P-0016642-T01-IM6	SOMATIC	TENM4	ATM	11	11	78443927	108124711	Intron of TENM4(-):305bp before exon 21	Exon 13 of ATM(+)		GRCh37	INVERSION	10	52	Protein Fusion: mid-exon  {ATM:TENM4}	PRECISE	3to3	ATM (NM_000051) - TENM4 (NM_001098816) rearrangement : c.2069:ATM_c.2877-305:TENM4inv	yes	unknown	29680784	100759	138575	0	52
P-0006963-T01-IM5	SOMATIC	TERT	TERT	5	5	1295363	1296461	Promoter of TERT(-): 201bp from tx start	Promoter of TERT(-): 1Kb from tx start		GRCh37	DELETION	23	19	Deletion within transcript	PRECISE	3to5	TERT (NM_198253) rearrangement : c.-1357_-259del	yes	unknown	1098	4	9	0	19
P-0070314-T01-IM7	SOMATIC	TERT	TERT	5	5	1260751	1266396	Intron of TERT(-):36bp before exon 12	Intron of TERT(-):182bp after exon 10		GRCh37	DUPLICATION	10	8	Duplication of 1 exon : in frame	PRECISE	5to3	TERT (NM_198253) rearrangement: c.2654+183_c.2844-36dup	yes	unknown	5645	2559	2990	0	8
P-0052826-T01-IM6	SOMATIC	TERT	CTNND2	5	5	1272350	11788950	Exon 7 of TERT(-)	Intron of CTNND2(-):57Kb before exon 2		GRCh37	DUPLICATION	10	80	Protein Fusion: mid-exon  {TERT:CTNND2}	PRECISE	5to3	TERT (NM_198253) - CTNND2 (NM_001332) rearrangement: c.2332:TERT_c.38-56566:CTNND2dup	yes	unknown	10516600	24319	264130	0	132
P-0029151-T01-IM6	SOMATIC	TERT	SLC6A3	5	5	1264648	1412032	Exon 11 of TERT(-)	Intron of SLC6A3(-):562bp before exon 9		GRCh37	DUPLICATION	10	8	Protein Fusion: mid-exon  {TERT:SLC6A3}	PRECISE	5to3	TERT (NM_198253) - SLC6A3 (NM_001044) rearrangement: c.2714:TERT_c.1157-562:SLC6A3dup	yes	unknown	147384	21048	35226	0	14
P-0086681-T01-IM7	SOMATIC	TERT	CLPTM1L	5	5	1264414	1337639	Intron of TERT(-):104bp after exon 11	Intron of CLPTM1L(-):379bp after exon 5		GRCh37	DUPLICATION			Protein Fusion: out of frame  {TERT:CLPTM1L}	PRECISE	5to3	TERT (NM_198253) - CLPTM1L (NM_030782) rearrangement: c.2843+105:TERT_c.678+380:CLPTM1Ldup			73225	40253	68559	0	58
P-0049807-T01-IM6	SOMATIC	TERT	ADCY2	5	5	1271501	7735518	Intron of TERT(-):182bp before exon 8	Intron of ADCY2(+):8Kb after exon 14		GRCh37	DELETION	5	10	TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: c.2383-182:TERT_chr5:g.7735518del	yes	unknown	6464017	38057	38079	0	10
P-0049308-T02-IM6	SOMATIC	TERT	CDH18	5	5	1264721	20081454	Intron of TERT(-):14bp before exon 11	5-UTR of CDH18(-):608Kb before coding start		GRCh37	INVERSION	10	11	TERT-intragenic	PRECISE	3to3	TERT (NM_198253) rearrangement: c.2655-14:TERT_chr5:g.20081454inv	yes	unknown	18816733	62094	51472	0	11
P-0067815-T01-IM7	SOMATIC	TERT	MIR6075	5	5	1295570	1533497	Promoter of TERT(-):42Kb from tx start	IGR: 23Kb before MIR6075(-)		GRCh37	DELETION	10	24	TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: c.-466:TERT_chr5:g.1533497dup	yes	unknown	237927	5577	7900	0	24
P-0068922-T01-IM7	SOMATIC	TERT	TERT	14	5	53256281	1253826	5-UTR of GNPNAT1(-):11Kb before coding start	3-UTR of TERT(-):16bp after coding stop		GRCh37	TRANSLOCATION	10	18	TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: t(5;14)(p15.33;q22.1)(chr5:g.1253826::chr14:g.53256281)	yes	unknown	0	0	0	0	19
P-0026697-T02-IM7	SOMATIC	TERT	MIR6075	5	5	1295360	1541041	Promoter of TERT(-):42Kb from tx start	IGR: 30Kb before MIR6075(-)		GRCh37	DELETION	10	34	TERT-intragenic	PRECISE	3to5	TERT (NM_198253)  rearrangement: g.1295360_g.1541041del	yes	unknown	245681	7298	8084	0	35
P-0008960-T01-IM5	SOMATIC	TERT		5	5	1295580	30794048	Promoter of TERT(-): 418bp from tx start	IGR: 400Kb before CDH6(+)		GRCh37	DELETION			TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: c.-476_chr5:g.30794048del			29498468	43911	44393	0	4
P-0011192-T01-IM5	SOMATIC	TERT		5	5	1295442	1536135	Promoter of TERT(-): 280bp from tx start	IGR: 36Kb before SDHAP3(-)		GRCh37	DELETION			TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: c.-338:TERT_chr5:g.1536135del			240693	247	497	0	47
P-0011331-T01-IM5	SOMATIC	TERT		5	5	23741	1272471	IGR: 117Kb before PLEKHG4B(+)	Intron of TERT(-): 76bp before exon 7		GRCh37	INVERSION			TERT-intragenic	PRECISE	3to3	TERT (NM_198253) Rearrangement :  chr5:g.23741_c.2287-76:TERTinv			1248730	35790	42340	0	5
P-0024203-T01-IM6	SOMATIC	TERT		21	5	17011913	1279360	IGR: 90Kb before USP25(+)	Intron of TERT(-):45bp after exon 5		GRCh37	TRANSLOCATION			TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: t(5;21)(p15.33;q21.1)(chr5:g.1279360::chr21:g.17011913)			0	0	0	0	140
P-0049363-T01-IM6	SOMATIC	TERT		8	5	52991942	1279525	IGR: 31Kb before ST18(-)	Exon 5 of TERT(-)		GRCh37	TRANSLOCATION			TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: t(5;8)(p15.33;q11.23)(chr5:g.1279525::chr8:g.52991942)			0	0	0	0	21
P-0072861-T01-IM7	SOMATIC	TERT		5	5	1255726	1426459	Intron of TERT(-):200bp before exon 14	Intron of SLC6A3(-):4Kb before exon 5		GRCh37	INVERSION			TERT-intragenic	PRECISE	3to3	TERT (NM_198253) rearrangement: c.3033-200:TERT_chr5:g.1426459inv			170733	33070	63747	0	9
P-0086866-T01-IM7	SOMATIC	TERT		5	5	1295853	1535304	Promoter of TERT(-):43Kb from tx start	IGR: 24Kb before MIR6075(-)		GRCh37	DELETION			TERT-intragenic	PRECISE	3to5	TERT (NM_198253) rearrangement: c.-749:TERT_chr5:g.1535304del			239451	2221	4290	0	165
P-0068093-T01-IM7	SOMATIC	TET1	TET1	19	10	40097514	70411820	Intron of LGALS13(+):348bp before exon 4	Intron of TET1(+):127bp after exon 5		GRCh37	TRANSLOCATION	10	28	Antisense Fusion	PRECISE	3to3	TET1 (NM_030625) rearrangement: t(10;19)(q21.3;q13.2)(chr10:g.70411820::chr19:g.40097514)	yes	unknown	0	0	0	0	28
P-0021679-T01-IM6	SOMATIC	TET1		10	10	70406065	70407777	Exon 4 of TET1(+)	Intron of TET1(+):1Kb after exon 4		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	TET1 (NM_030625) rearrangement: c.3579_c.4276+1015inv			1712	7377	7831	0	69
P-0034085-T02-IM6	SOMATIC	TET1	TET1	10	10	70442698	70448459	Exon 10 of TET1(+)	Intron of TET1(+):2Kb after exon 11		GRCh37	DELETION	0	5	Deletion within transcript : mid-exon	IMPPRECISE	3to5	TET1 (NM_030625) rearrangement: c.5020_c.5404+1995del	yes	unknown	5761	2536	2402	0	5
P-0076922-T01-IM7	SOMATIC	TET1	TET1	10	10	70332740	70344327	Exon 2 of TET1(+)	Intron of TET1(+):10Kb after exon 2		GRCh37	DUPLICATION	3	2	Duplication within transcript : mid-exon	PRECISE	5to3	TET1 (NM_030625) rearrangement: c.645_c.1914+10318dup	yes	unknown	11587	4495	9819	0	2
P-0023121-T01-IM6	SOMATIC	TET1		10	10	70333148	70433415	Exon 2 of TET1(+)	Intron of TET1(+):613bp after exon 8		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	TET1 (NM_030625) rearrangement: c.1053_c.4824+613dup			100267	32548	33013	0	7
P-0002915-T01-IM3	SOMATIC	TET1	TET1	10	10	70332166	70339609	Exon 2 of TET1(+)	Intron of TET1(+): 6Kb after exon 2		GRCh37	DUPLICATION	13	14	Duplication within transcript: mid-exon	PRECISE	5to3		yes	unknown	7443	14392	11191	0	15
P-0048977-T01-IM6	SOMATIC	TET1	SUPV3L1	10	10	70441397	70960990	Intron of TET1(+):152bp after exon 9	Intron of SUPV3L1(+):735bp after exon 12		GRCh37	DELETION	7	12	Protein Fusion: in frame  {TET1:SUPV3L1}	PRECISE	3to5	TET1 (NM_030625) - SUPV3L1 (NM_003171) rearrangement: c.4914+152:TET1_c.1518+735:SUPV3L1del	yes	unknown	519593	8516	13574	0	12
P-0069719-T01-IM7	SOMATIC	TET1	COX20	10	1	70392362	245006349	Intron of TET1(+):12Kb before exon 4	Exon 4 of COX20(+)		GRCh37	TRANSLOCATION	10	5	Protein Fusion: mid-exon  {COX20:TET1}	PRECISE	5to3	TET1 (NM_030625) rearrangement: t(1;10)(q44;q21.3)(chr1:g.245006349::chr10:g.70392362)	yes	unknown	0	0	0	16	16
P-0063354-T02-IM7	SOMATIC	TET1	C10orf11	10	10	70446364	77592560	Exon 11 of TET1(+)	Intron of C10orf11(+):50Kb after exon 1		GRCh37	DELETION	7	6	Protein Fusion: mid-exon  {TET1:C10orf11}	PRECISE	3to5	TET1 (NM_030625) - C10orf11 (NM_032024) rearrangement: c.5304:TET1_c.47+49780:C10orf11del	yes	unknown	7146196	36600	65386	0	6
P-0018785-T01-IM6	SOMATIC	TET1	CTNNA3	10	10	67822713	70404575	Intron of CTNNA3(-):6Kb after exon 15	Exon 4 of TET1(+)		GRCh37	INVERSION			Protein Fusion: mid-exon  {TET1:CTNNA3}	PRECISE	3to3	TET1 (NM_030625) - CTNNA3 (NM_013266) rearrangement: c.2089:TET1_c.2159+6353:CTNNA3inv			2581862	16889	36620	0	88
P-0043336-T01-IM6	SOMATIC	TET1	CTNNBIP1	10	1	70360699	9933952	Intron of TET1(+):38bp before exon 3	5-UTR of CTNNBIP1(-):23Kb before coding start		GRCh37	TRANSLOCATION	10	58	TET1-intragenic	PRECISE	5to3	TET1 (NM_030625) rearrangement: t(1;10)(p36.22;q21.3)(chr1:g.9933952::chr10:g.70360699)	yes	unknown	0	0	0	0	57
P-0066883-T02-IM7	SOMATIC	TET1	HNRNPU-AS1	10	1	70392408	245006567	Intron of TET1(+):12Kb before exon 4	3-UTR of HNRNPU-AS1(-):4Kb after coding stop		GRCh37	TRANSLOCATION	6	11	TET1-intragenic	PRECISE	5to3	TET1 (NM_030625) rearrangement: t(1;10)(q44;q21.3)(chr1:g.245006567::chr10:g.70392408)	yes	unknown	0	0	0	28	40
P-0030872-T01-IM6	SOMATIC	TET1		10	3	70446541	156287710	Intron of TET1(+):77bp after exon 11	IGR: 30Kb before SSR3(-)		GRCh37	TRANSLOCATION			TET1-intragenic	PRECISE	3to5	TET1 (NM_030625) rearrangement: t(3;10)(q25.31;q21.3)(chr3:g.156287710::chr10:g.70446541)			0	0	0	0	17
P-0041409-T01-IM6	SOMATIC	TET2	TET2	22	4	48672816	106156620	Promoter of MIR3201(+):3Kb from tx start	Exon 3 of TET2(+)		GRCh37	TRANSLOCATION	10	101	Antisense Fusion	PRECISE	3to3	TET2 (NM_001127208) rearrangement: t(4;22)(q24;q13.32)(chr4:g.106156620::chr22:g.48672816)	yes	unknown	0	0	0	0	100
P-0060849-T01-IM7	SOMATIC	TET2	TET2	4	4	106153884	106158049	5-UTR of TET2(+):1Kb before coding start	Exon 3 of TET2(+)		GRCh37	DELETION	10	34	Deletion within transcript : mid-exon	PRECISE	3to5	TET2 (NM_001127208) rearrangement: c.2950:TET2_chr4:g.106153884del	yes	unknown	4165	22329	24827	0	34
P-0014313-T01-IM6	SOMATIC	TET2	TET2	4	4	106155213	106185151	Exon 3 of TET2(+)	Intron of TET2(+): 2Kb after exon 8		GRCh37	DUPLICATION	17	12	Duplication within transcript: mid-exon	PRECISE	5to3	TET2 (NM_001127208) rearrangement: c.114_c.4044+2146dup	yes	unknown	29938	31799	39629	0	12
P-0002778-T01-IM3	SOMATIC	TET2	PAPSS1	4	4	106156573	108499812	Exon 3 of TET2(+)	IGR: 35Kb before PAPSS1(-)		GRCh37	DUPLICATION	30	13	PAPSS1-TET2 fusion	PRECISE	5to3		yes	unknown	2343239	45890	46395	0	15
P-0011348-T01-IM5	SOMATIC	TET2	NR3C2	4	4	106155458	149276942	Exon 3 of TET2(+)	Intron of NR3C2(-): 79Kb after exon 2		GRCh37	INVERSION	15	9	Protein fusion: mid-exon (NR3C2-TET2)	PRECISE	5to5	NR3C2 (NM_000901) - TET2 (NM_001127208) rearrangement: c.1757+79314:NR3C2_c.359:TET2inv	yes	unknown	43121484	83074	98713	0	9
P-0019819-T02-IM6	SOMATIC	TET2	ARHGEF38	4	4	106180736	106494264	Intron of TET2(+):39bp before exon 7	Intron of ARHGEF38(+):16Kb before exon 2		GRCh37	DUPLICATION	10	27	Protein Fusion: out of frame  {ARHGEF38:TET2}	PRECISE	5to3	ARHGEF38 (NM_001242729) - TET2 (NM_001127208) rearrangement: c.197-16141:ARHGEF38_c.3804-40:TET2dup	yes	unknown	313528	10578	18385	0	27
P-0002778-T01-IM3	SOMATIC	TET2	SEC24B	4	4	106156519	110351841	Exon 3 of TET2(+)	IGR: 3Kb before SEC24B(+)		GRCh37	DELETION	61	28	SEC24B-TET2 fusion	PRECISE	3to5		yes	unknown	4195322	48312	50902	0	32
P-0043868-T01-IM6	SOMATIC	TET2	TET2	4	4	105889922	106197249	IGR: 177Kb before TET2(+)	Exon 11 of TET2(+)		GRCh37	DELETION	6	5	TET2-intragenic	PRECISE	3to5	TET2 (NM_001127208) rearrangement: c.5582:TET2_chr4:g.105889922del	yes	unknown	307327	23947	22563	0	5
P-0070017-T01-IM7	SOMATIC	TET2	ARHGEF38	4	4	106162453	106457591	Intron of TET2(+):42bp before exon 4	IGR: 16Kb before ARHGEF38(+)		GRCh37	INVERSION	3	4	TET2-intragenic	PRECISE	5to5	TET2 (NM_001127208) rearrangement: c.3410-43:TET2_chr4:g.106457591inv	yes	unknown	295138	17207	17499	0	4
P-0007647-T01-IM5	SOMATIC	TET2		4	4	104768006	106164817	IGR: 257Kb before TACR3(-)	Exon 6 of TET2(+)		GRCh37	DUPLICATION			TET2-intragenic	PRECISE	5to3	TET2 (NM_001127208) rearrangement: chr4:g.104768006 _c.3685dup			1396811	38581	48942	0	25
P-0020823-T01-IM6	SOMATIC	TET2		4	4	63484452	106193783	IGR: 547Kb before LPHN3-AS1(-)	Exon 10 of TET2(+)		GRCh37	DELETION			TET2-intragenic	PRECISE	3to5	TET2 (NM_001127208) rearrangement: chr4:g.63484452_c.4245:TET2del			42709331	110437	91930	0	3
P-0066862-T01-IM7	SOMATIC	TEX14	RNF43	17	17	56441116	56635715	Intron of RNF43(-):155bp before exon 4	Intron of TEX14(-):504bp before exon 31		GRCh37	DELETION	10	25	Protein Fusion: out of frame  {TEX14:RNF43}	PRECISE	3to5	TEX14 (NM_001201457) - RNF43 (NM_017763) rearrangement: c.4406-504:TEX14_c.376-155:RNF43del	yes	unknown	194599	3864	16525	0	26
P-0026351-T01-IM6	SOMATIC	TFE3		X	X	48890315	48895321	Intron of TFE3(-):664bp after exon 8	Intron of TFE3(-):213bp after exon 5		GRCh37	DUPLICATION			Duplication of 3 exons : out of frame	PRECISE	5to3	TFE3 (NM_006521) rearrangement: c.885+214_c.1136+665dup			5006	7297	14149	0	14
P-0016869-T04-IM7	SOMATIC	TFE3	TFE3	X	X	47437503	48896354	Intron of SYN1(-):603bp before exon 6	Intron of TFE3(-):277bp after exon 3		GRCh37	INVERSION	5	2	TFE3-intragenic	PRECISE	3to3	TFE3 (NM_006521) rearrangement: c.534+278:TFE3_chrX:g.47437503inv	yes	unknown	1458851	15670	27738	0	2
P-0056626-T01-IM6	SOMATIC	TFE3	TFE3	X	X	47051560	48892259	5-UTR of UBA1(+):7Kb before coding start	Intron of TFE3(-):493bp before exon 6		GRCh37	INVERSION	10	4	Transcript Fusion {TFE3:UBA1}	PRECISE	5to5	TFE3 (NM_006521) rearrangement: c.886-493:TFE3_chrX:g.47051560inv	yes	unknown	1840699	47406	73346	0	5
P-0066243-T01-IM7	SOMATIC	TFG	ADGRG7								GRCh37				TFG-ADGRG7 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-ADGRG7 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and ADGRG7 (GPR128)  Exon2 (NM_032787). Note1: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732.	yes	unknown					
P-0073824-T01-IM7	SOMATIC	TFG	ADGRG7								GRCh37				TFG-ADGRG7 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-ADGRG7 (GPR128)  fusion. Note1: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and ADGRG7 Exon2 (NM_032787). PMID: 19797732 Note2: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0037972-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787).	yes	unknown					
P-0042556-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_001195478) and GPR128 Exon2 (NM_032787). Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). Note2: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0042625-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). Note2: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0044077-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_001195478) and GPR128 Exon2 (NM_032787). PMID: 19797732  Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0046544-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787).PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0048063-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). Note2: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0049749-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0050581-T02-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787).  Note1: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0054065-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited. PMID: 19797732	yes	unknown					
P-0055365-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0058657-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID: 19797732  Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0035647-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID: 19797732	yes	unknown					
P-0044708-T02-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited and any role it has in the pathogenesis of lymphoma remains uncertain. PMID: 19797732	yes	unknown					
P-0048058-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited. PMID: 19797732	yes	unknown					
P-0049192-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited. PMID: 19797732	yes	unknown					
P-0051177-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited  PMID: 19797732	yes	unknown					
P-0058865-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787).  PMID: 19797732  Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0063916-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL:   TFG-GPR128 fusion.  Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 (ADGRG7) Exon2 (NM_032787). PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0070925-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). Note1: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0072711-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL:   TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 (ADGRG7) Exon2 (NM_032787). PMID: 19797732   Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0060951-T01-IM7	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 (ADGRG7) Exon2 (NM_032787). PMID: 19797732  Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0043422-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). Note1: This is a known structural germline polymorphism seen in healthy individuals. PMID: 19797732	yes	unknown					
P-0050837-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion. Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). This has been described as a polymorphic fusion seen in up to 2% of healthy population. However, functional studies on this fusion are limited  PMID: 19797732	yes	unknown					
P-0039739-T01-IM6	SOMATIC	TFG	GPR128								GRCh37				TFG-GPR128 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TFG-GPR128 fusion.  Note: The rearrangement is an in-frame fusion between genes TFG Exon3 (NM_006070) and GPR128 Exon2 (NM_032787). PMID: 19797732  Note1: This is a known structural germline polymorphism seen in healthy individuals.	yes	unknown					
P-0084904-T01-IM7	SOMATIC	TGFBR1		9	9	101867462	103220682	5-UTR of TGFBR1(+):25bp before coding start	Intron of MSANTD3-TMEFF1(+):16Kb after exon 1		GRCh37	INVERSION			Antisense Fusion	PRECISE	3to3	TGFBR1 (NM_004612) : rearrangement:  c.-26:TGFBR1_g.103220682del			1353220	16761	25977	0	41
P-0013866-T01-IM5	SOMATIC	TGFBR1	TGFBR1	9	9	101867536	101869667	Exon 1 of TGFBR1(+)	Intron of TGFBR1(+): 2Kb after exon 1		GRCh37	DELETION	29	9	Deletion within transcript: mid-exon	PRECISE	3to5	TGFBR1 (NM_004612) Rearrangement : c.49_97+2083del	yes	unknown	2131	0	2	0	9
P-0015108-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101858947	101894853	IGR: 8Kb before TGFBR1(+)	Exon 3 of TGFBR1(+)		GRCh37	DELETION	32	20	TGFBR1-intragenic	PRECISE	3to5	TGFBR1(NM_004612) Rearrangement : chr9:101858947_c.406:TGFBR1del	yes	unknown	35906	3927	3020	0	20
P-0059492-T01-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101135054	101867650	Intron of GABBR2(-):1Kb before exon 12	Intron of TGFBR1(+):66bp after exon 1		GRCh37	DELETION	10	61	TGFBR1-intragenic	PRECISE	3to5	TGFBR1 (NM_004612) rearrangement: c.97+66:TGFBR1_chr9:g.101135054del	yes	unknown	732596	4132	2181	0	63
P-0026786-T01-IM6	SOMATIC	TGFBR2	PDE4B	3	1	30664833	66741811	Intron of TGFBR2(+):68bp after exon 2	Intron of PDE4B(+):10Kb after exon 6		GRCh37	TRANSLOCATION	10	15	Antisense Fusion	PRECISE	3to3	TGFBR2 (NM_001024847) Rearrangement : t(1;3)(q11.2;p23)(chr1:g.66741811::chr3:g.30664833)	yes	unknown	0	0	0	0	15
P-0044856-T01-IM6	SOMATIC	TGFBR2	GADL1	3	3	30713383	30808859	Exon 5 of TGFBR2(+)	Intron of GADL1(-):11Kb after exon 14		GRCh37	DELETION	7	8	Antisense Fusion	PRECISE	3to5	TGFBR2 (NM_001024847) rearrangement: c.783:TGFBR2_chr3:g.30808859del	yes	unknown	95476	4708	7977	0	8
P-0038083-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30709768	30713554	Intron of TGFBR2(+):3Kb before exon 5	Exon 5 of TGFBR2(+)		GRCh37	DELETION	10	36	Deletion within transcript : mid-exon	PRECISE	3to5	TGFBR2 (NM_001024847) rearrangement: c.530-3362_c.954del	yes	unknown	3786	2528	3286	0	36
P-0043661-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30713871	30716745	Exon 5 of TGFBR2(+)	Intron of TGFBR2(+):1Kb after exon 6		GRCh37	DELETION	10	24	Deletion within transcript : mid-exon	PRECISE	3to5	TGFBR2 (NM_001024847) rearrangement: c.1271_c.1471+1007del	yes	unknown	2874	1562	2176	0	24
P-0007287-T01-IM5	SOMATIC	TGFBR2	GADL1	3	3	30648382	30799354	Exon 1 of TGFBR2(+)	Intron of GADL1(-): 20Kb after exon 14		GRCh37	INVERSION	43	10	Protein fusion: mid-exon (GADL1-TGFBR2)	PRECISE	5to5	GALD1 (NM_207359) - TGFBR2 (NM_001024847) rearrangement: c.1392+20317:GALD1_c.7:TGFBR2inv	yes	unknown	150972	7626	9128	0	10
P-0063708-T01-IM7	SOMATIC	TGFBR2	TGFBR2	6	3	45684417	30729769	IGR: 182Kb before CLIC5(-)	Intron of TGFBR2(+):106bp before exon 6		GRCh37	TRANSLOCATION	10	32	TGFBR2-intragenic	PRECISE	5to5	TGFBR2 (NM_001024847) rearrangement: t(3;6)(p24.1;p21.1)(chr3:g.30729769::chr6:g.45684417)	yes	unknown	0	0	0	0	32
P-0025947-T01-IM6	SOMATIC	TGFBR2		3	3	30648377	30703237	Exon 1 of TGFBR2(+)	Intron of TGFBR2(+):10Kb before exon 5		GRCh37	INVERSION			TGFBR2-intragenic	PRECISE	5to5	TGFBR2 (NM_001024847) Rearrangement : c.2_c.530-9893inv			54860	3412	2932	0	64
P-0060918-T01-IM7	SOMATIC	THADA	FAM136A								GRCh37				THADA-FAM136A Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: THADA-FAM136A fusion. Note: The rearrangement is an in-frame fusion between genes THADA Exon29 (NM_022065) and FAM136A Exon2 (NM_032822). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0023453-T01-IM6	SOMATIC	THOC2	EIF4A2	X	3	122823360	186506986	Intron of THOC2(-):3Kb before exon 8	Exon 11 of EIF4A2(+)		GRCh37	TRANSLOCATION	10	19	Antisense Fusion	PRECISE	5to3	EIF4A2 (NM_001967) rearrangement: t(X;3)(q25;q27.3)(chrX:g.122823360::chr3:g.186506986)	yes	unknown	0	0	0	0	23
P-0019377-T01-IM6	SOMATIC	TIAM1	NOTCH2	21	1	32851230	120510065	5-UTR of TIAM1(-):359Kb before coding start	Exon 8 of NOTCH2(-)		GRCh37	TRANSLOCATION	10	9	Protein Fusion: mid-exon  {NOTCH2:TIAM1}	PRECISE	3to5	NOTCH2 (NM_024408) rearrangement: t(1;21)(p21;q22.11)(chr1:g.120510065::chr21:g.32851230)	yes	unknown	0	0	0	0	9
P-0034868-T01-IM6	SOMATIC	TLK2	BRIP1	17	17	59761015	60672260	Exon 20 of BRIP1(-)	Intron of TLK2(+):2Kb before exon 18		GRCh37	INVERSION	10	9	Protein Fusion: mid-exon  {TLK2:BRIP1}	PRECISE	3to3	TLK2 (NM_006852) - BRIP1 (NM_032043) rearrangement: c.1461-1686:TLK2_c.3392:BRIP1inv	yes	unknown	911245	17770	28987	0	8
P-0049138-T02-IM6	SOMATIC	TMBIM4	KMT2C	12	7	66536216	151845234	Intron of TMBIM4(-):3Kb after exon 5	Exon 52 of KMT2C(-)		GRCh37	TRANSLOCATION	10	7	Protein Fusion: mid-exon  {TMBIM4:KMT2C}	PRECISE	5to3	TMBIM4 (NM_016056) - KMT2C (NM_170606) rearrangement: t(7;12)(q36.1;q14.3)(chr7:g.151845234::chr12:g.66536216)	yes	unknown	0	0	0	0	7
P-0026676-T01-IM6	SOMATIC	TMEM117	PIK3R1	12	5	44739711	67522870	Intron of TMEM117(+):31Kb before exon 7	Intron of PIK3R1(+):33bp after exon 2		GRCh37	TRANSLOCATION	10	6	Protein Fusion: out of frame  {PIK3R1:TMEM117}	PRECISE	5to3	PIK3R1 (NM_181523) - TMEM117 (NM_032256) rearrangement: t(5;12)(5q13.1;12q12)(chr5:g.67522870::chr12:g.44739711)	yes	unknown	0	0	0	0	6
P-0039696-T01-IM6	SOMATIC	TMEM145	CIC	19	19	42795884	42823873	Exon 11 of CIC(+)	Intron of TMEM145(+):595bp before exon 13		GRCh37	DUPLICATION	10	4	Protein Fusion: mid-exon  {TMEM145:CIC}	PRECISE	5to3	TMEM145 (NM_173633) - CIC (NM_015125) rearrangement: c.1074-596:TMEM145_c.2873:CICdup	yes	unknown	27989	33463	16483	0	5
P-0023526-T01-IM6	SOMATIC	TMIE	SETD2	3	3	46747620	47165971	Intron of TMIE(+):223bp after exon 2	Exon 3 of SETD2(-)		GRCh37	INVERSION	10	36	Protein Fusion: mid-exon  {SETD2:TMIE}	PRECISE	5to5	SETD2 (NM_014159) - TMIE (NM_147196) rearrangement: c.155:SETD2_c.211+223:TMIEinv	yes	unknown	418351	62532	43552	0	38
P-0025988-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42870515	140484791	Intron of TMPRSS2(-):399bp before exon 2	Intron of BRAF(-):2Kb before exon 10		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) - BRAF (NM_004333) rearrangement: t(7;21)(q34;q22.3)(chr7:g.140484791::chr21:g.42870515)			0	0	0	0	153
P-0016548-T01-IM6	SOMATIC	TMPRSS2	RSL24D1	21	15	42876875	55490150	Intron of TMPRSS2(-):3Kb after exon 1	Promoter of RSL24D1(-):17Kb from tx start		GRCh37	TRANSLOCATION	10	72	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q21.3;q22.3)(chr15:g.55490150::chr21:g.42876875)	yes	unknown	0	0	0	0	87
P-0007547-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42842020	42871317	Intron of TMPRSS2(-): 555bp after exon 11	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	INVERSION	64	57	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) Rearrangement :  c.56-1201_1282+555inv	yes	unknown	29297	45703	25362	0	53
P-0023249-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845757	42872436	Intron of TMPRSS2(-):334bp before exon 9	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	18	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) Rearrangement : c.56-2320_c.839-334inv	yes	unknown	26679	49046	14609	0	22
P-0006247-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42855218	42872286	Intron of TMPRSS2(-): 3Kb before exon 6	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	INVERSION	35	13	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) Rearrangement : c.56-2170_557-2689inv	yes	unknown	17068	43113	40359	0	13
P-0019324-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42867424	42872183	Intron of TMPRSS2(-):919bp before exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	61	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2067_c.127-919inv	yes	unknown	4759	42747	31395	0	73
P-0027216-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845441	42871641	Intron of TMPRSS2(-):18bp before exon 9	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	25	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-1525_c.839-18del	yes	unknown	26200	36987	25871	0	35
P-0039499-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42858719	42866629	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):124bp before exon 3		GRCh37	INVERSION	10	10	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.127-124_c.556+1602inv	yes	unknown	7910	6183	1857	0	12
P-0011515-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859816	42871070	Intron of TMPRSS2(-): 505bp after exon 5	Intron of TMPRSS2(-): 954bp before exon 2		GRCh37	INVERSION	36	22	Antisense fusion	PRECISE	5to5	TMPRSS2 (NM_001135099)  Rearrangement : c.56-954_c.556+505inv	yes	unknown	11254	35790	28513	0	12
P-0042346-T01-IM6	SOMATIC	TMPRSS2	HMGN2P46	21	15	42873873	45823222	Intron of TMPRSS2(-):4Kb before exon 2	5-UTR of HMGN2P46(+):26Kb before coding start		GRCh37	TRANSLOCATION	10	75	Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q21.1;q22.3)(chr15:g.45823222::chr21:g.42873873)	yes	unknown	0	0	0	0	84
P-0052092-T01-IM6	SOMATIC	TMPRSS2	LINC01252	21	12	42873895	11710254	Intron of TMPRSS2(-):4Kb before exon 2	5-UTR of LINC01252(+):7Kb before coding start		GRCh37	TRANSLOCATION	10	214	Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(12;21)(p13.2;q22.3)(chr12:g.11710254::chr21:g.42873895)	yes	unknown	0	0	0	0	220
P-0037664-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857943	42870416	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):300bp before exon 2		GRCh37	INVERSION	10	74	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-300_c.556+2378inv	yes	unknown	12473	17320	22317	0	80
P-0060684-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42854578	42867024	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):519bp before exon 3		GRCh37	INVERSION	10	31	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.127-519_c.557-2049inv	yes	unknown	12446	6534	3855	0	32
P-0060907-T01-IM7	SOMATIC	TMPRSS2	KLK2	21	19	42876201	51385322	Intron of TMPRSS2(-):4Kb after exon 1	Promoter of KLK2(+):9Kb from tx start		GRCh37	TRANSLOCATION	10	44	Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.33;q22.3)(chr19:g.51385322::chr21:g.42876201)	yes	unknown	0	0	0	0	44
P-0043565-T01-IM6	SOMATIC	TMPRSS2	MEIS2	21	15	42874936	37245374	Intron of TMPRSS2(-):5Kb before exon 2	Intron of MEIS2(-):3Kb before exon 9		GRCh37	TRANSLOCATION	10	63	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q14;q22.3)(chr15:g.37245374::chr21:g.42874936)	yes	unknown	0	0	0	0	72
P-0037132-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42868242	42872257	Intron of TMPRSS2(-):2Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	4	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2141_c.127-1737inv	yes	unknown	4015	30060	29504	0	4
P-0064110-T01-IM7	SOMATIC	TMPRSS2	SSR1	21	6	42842465	7316283	Intron of TMPRSS2(-):109bp after exon 11	Promoter of SSR1(-):35Kb from tx start		GRCh37	TRANSLOCATION	10	23	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(p24.3;q22.3)(chr6:g.7316283::chr21:g.42842465)	yes	unknown	0	0	0	0	23
P-0066767-T01-IM7	SOMATIC	TMPRSS2	SLC12A2	21	5	42874674	127508513	Intron of TMPRSS2(-):5Kb before exon 2	Intron of SLC12A2(+):1Kb after exon 19		GRCh37	TRANSLOCATION	10	13	Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(5;21)(q23.3;q22.3)(chr5:g.127508513::chr21:g.42874674)	yes	unknown	0	0	0	0	13
P-0069345-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42862244	42866536	Intron of TMPRSS2(-):724bp before exon 4	Intron of TMPRSS2(-):31bp before exon 3		GRCh37	INVERSION	0	12	Antisense Fusion	IMPPRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.127-31_c.350-724inv	yes	unknown	4292	1503	1758	0	13
P-0072598-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42770395	42845277	Intron of MX2(+):428bp before exon 9	Exon 9 of TMPRSS2(-)		GRCh37	DELETION	10	38	Antisense Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.985:TMPRSS2_chr21:g.42770395del	yes	unknown	74882	6095	9020	0	39
P-0076711-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42853544	42866436	Intron of TMPRSS2(-):1Kb before exon 6	Exon 3 of TMPRSS2(-)		GRCh37	INVERSION	10	6	Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.196_c.557-1015inv	yes	unknown	12892	2920	4823	0	6
P-0017882-T01-IM6	SOMATIC	TMPRSS2		21	17	42870483	7790479	Intron of TMPRSS2(-):367bp before exon 2	Intron of CHD3(+):2Kb after exon 1		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(p13.1;q22.3)(chr17:g.7790479::chr21:g.42870483)			0	0	0	0	85
P-0046736-T01-IM6	SOMATIC	TMPRSS2		21	21	42863592	42874116	Intron of TMPRSS2(-):2Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4000_c.350-2072inv			10524	39457	31687	0	12
P-0047795-T01-IM6	SOMATIC	TMPRSS2		21	21	42855586	42875071	Intron of TMPRSS2(-):3Kb before exon 6	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.55+4806_c.557-3057inv			19485	42156	38431	0	56
P-0061934-T01-IM7	SOMATIC	TMPRSS2		21	5	42868051	132239622	Intron of TMPRSS2(-):2Kb before exon 3	Intron of AFF4(-):437bp after exon 6		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(5;21)(q31.1;q22.3)(chr5:g.132239622::chr21:g.42868051)			0	0	0	0	7
P-0068638-T01-IM7	SOMATIC	TMPRSS2		21	21	42843016	42867852	Intron of TMPRSS2(-):346bp before exon 11	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.127-1347_c.1187-346inv			24836	10949	12657	0	31
P-0080895-T01-IM7	SOMATIC	TMPRSS2		21	21	35963304	42873680	Intron of RCAN1(-):24Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	INVERSION			Antisense Fusion	IMPPRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-3564:TMPRSS2_chr21:g.35963304inv			6910376	128940	96481	0	19
P-0084895-T01-IM7	SOMATIC	TMPRSS2		21	21	42845450	43302143	Intron of TMPRSS2(-):27bp before exon 9	Promoter of PRDM15(-):84Kb from tx start		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.839-27:TMPRSS2_chr21:g.43302143inv			456693	47371	37976	0	2
P-0088143-T01-IM7	SOMATIC	TMPRSS2		21	4	42871830	99361604	Intron of TMPRSS2(-):2Kb before exon 2	Intron of RAP1GDS1(+):2Kb before exon 14		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(4;21)(q23;q22.3)(chr4:g.99361604::chr21:g.42871830)			0	0	0	0	55
P-0022179-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869454	42870251	Intron of TMPRSS2(-):591bp after exon 2	Intron of TMPRSS2(-):135bp before exon 2		GRCh37	DELETION	10	58	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-135_c.126+592del	yes	unknown	797	6851	4484	0	68
P-0023546-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869250	42877268	Intron of TMPRSS2(-):795bp after exon 2	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	72	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+796_c.55+2609del	yes	unknown	8018	59955	27452	0	78
P-0016594-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42868628	42872891	Intron of TMPRSS2(-):1Kb after exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	37	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+1418_c.56-2775del	yes	unknown	4263	25393	23820	0	39
P-0030029-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869973	42875772	Intron of TMPRSS2(-):72bp after exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	79	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement: c.126+73_c.55+4105del	yes	unknown	5799	31224	27500	0	88
P-0039234-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869408	42872788	Intron of TMPRSS2(-):637bp after exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	107	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2672_c.126+638del	yes	unknown	3380	23025	24781	0	255
P-0046775-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864232	42867125	Intron of TMPRSS2(-):2Kb after exon 3	Intron of TMPRSS2(-):620bp before exon 3		GRCh37	DELETION	10	8	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-620_c.349+2051del	yes	unknown	2893	3124	2225	0	9
P-0065827-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42843925	42845753	Intron of TMPRSS2(-):17bp before exon 10	Intron of TMPRSS2(-):330bp before exon 9		GRCh37	DELETION	10	76	Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.839-330_c.1011-17del	yes	unknown	1828	2232	1739	0	77
P-0043422-T01-IM6	SOMATIC	TMPRSS2		21	21	42863128	42868186	Intron of TMPRSS2(-):2Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-1681_c.350-1608del			5058	7452	5624	0	20
P-0055491-T01-IM6	SOMATIC	TMPRSS2		21	21	42862220	42867133	Intron of TMPRSS2(-):700bp before exon 4	Intron of TMPRSS2(-):628bp before exon 3		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-628_c.350-700del			4913	3245	1910	0	22
P-0019918-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864160	42873623	Intron of TMPRSS2(-):2Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	12	Deletion of 2 exons : in frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-3507_c.349+2123del	yes	unknown	9463	41643	20394	0	12
P-0061879-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42839938	42843292	Intron of TMPRSS2(-):125bp before exon 13	Intron of TMPRSS2(-):440bp after exon 10		GRCh37	DELETION	10	13	Deletion of 2 exons : out of frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.1186+441_c.1426-125del	yes	unknown	3354	2945	1177	0	13
P-0005895-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42860977	42879628	Intron of TMPRSS2(-): 457bp after exon 4	Intron of TMPRSS2(-): 249bp after exon 1		GRCh37	DELETION	38	23	Deletion of 3 exons: in frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+249_c.436+457del	yes	unknown	18651	98443	143663	0	22
P-0039805-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42847808	42872972	Intron of TMPRSS2(-):695bp after exon 8	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	71	Deletion of 7 exons : in frame	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2856_c.838+696del	yes	unknown	25164	63165	40089	0	71
P-0042144-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42874842	42876014	Intron of TMPRSS2(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	0	30	Deletion within intron	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+3863_c.56-4726del	yes	unknown	1172	9321	7291	0	32
P-0043817-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42836304	42845179	Promoter of TMPRSS2(-):173bp from tx start	Intron of TMPRSS2(-):72bp after exon 9		GRCh37	DELETION	0	15	Deletion within transcript	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.1010+73:TMPRSS2_chr21:g.42836304del	yes	unknown	8875	5576	3750	0	15
P-0035219-T01-IM6	SOMATIC	TMPRSS2		21	21	42836406	42871834	Promoter of TMPRSS2(-):71bp from tx start	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-1718_c.*1663del			35428	35995	38064	0	40
P-0053002-T01-IM6	SOMATIC	TMPRSS2		21	21	42836202	42866514	Promoter of TMPRSS2(-):275bp from tx start	Intron of TMPRSS2(-):9bp before exon 3		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-9:TMPRSS2_chr21:g.42836202del			30312	22227	18075	0	18
P-0061622-T01-IM7	SOMATIC	TMPRSS2		21	21	42870930	42883008	Intron of TMPRSS2(-):814bp before exon 2	Promoter of TMPRSS2(-):47Kb from tx start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-814:TMPRSS2_chr21:g.42883008del			12078	45816	32145	0	21
P-0086791-T02-IM7	SOMATIC	TMPRSS2		21	21	42834975	42842378	Promoter of TMPRSS2(-):2Kb from tx start	Intron of TMPRSS2(-):196bp after exon 11		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.1282+197:TMPRSS2_chr21:g.42834975del			7403	4520	2523	0	8
P-0022406-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42834909	42842636	Promoter of TMPRSS2(-):2Kb from tx start	Exon 11 of TMPRSS2(-)		GRCh37	DELETION	10	23	Deletion within transcript : mid-exon	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.1221_c.*3160del	yes	unknown	7727	7960	7067	0	38
P-0047882-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857881	42868697	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DUPLICATION	10	46	Duplication of 3 exons : out of frame	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: c.126+1349_c.556+2440dup	yes	unknown	10816	9917	17370	0	47
P-0047937-T01-IM6	SOMATIC	TMPRSS2		21	21	42854129	42867987	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DUPLICATION			Duplication of 3 exons : out of frame	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: c.127-1482_c.557-1600dup			13858	7247	8557	0	78
P-0014935-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859468	42876271	Intron of TMPRSS2(-): 853bp after exon 5	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DUPLICATION	56	66	Duplication of 4 exons: in frame	PRECISE	5to3	TMPRSS2 (NM_001135099) Rearrangement : c.55+3606_556+853dup	yes	unknown	16803	120566	126084	0	63
P-0006108-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42849497	42866553	Intron of TMPRSS2(-): 950bp before exon 8	Intron of TMPRSS2(-): 48bp before exon 3		GRCh37	DUPLICATION	43	76	Duplication of 5 exons: out of frame	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement : c.127-48_795-950dup	yes	unknown	17056	14819	14235	0	72
P-0057126-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39988093	42877786	3-UTR of ERG(-):46Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	80	ERG-TMPRSS2 fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2091:TMPRSS2_c.-149-31224:ERGdel	yes	unknown	2889693	74686	117488	0	88
P-0041584-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	40027774	42870352	3-UTR of ERG(-):6Kb after coding stop	Intron of TMPRSS2(-):236bp before exon 2		GRCh37	DELETION	0	23	ERG-TMPRSS2 fusion	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) (TMPRSS2 exon 1 fused to ERG exon 2-11): c.56-236:TMPRSS2_c.-150+5808:ERGdel	yes	unknown	2842578	31671	54552	0	24
P-0042174-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39954054	42876470	3-UTR of ERG(-):80Kb after coding stop	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	29	ERG-TMPRSS2 fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449)rearrangement: c.55+3407:TMPRSS2_ c.-48+2714:ERGdel	yes	unknown	2922416	93085	94164	0	31
P-0066863-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	40018979	42867115	3-UTR of ERG(-):15Kb after coding stop	Intron of TMPRSS2(-):610bp before exon 3		GRCh37	DELETION	10	72	ERG-TMPRSS2 fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-610:TMPRSS2_c.-150+14603:ERGdel	yes	unknown	2848136	27826	25563	0	74
P-0073005-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39990390	42867180	3-UTR of ERG(-):43Kb after coding stop	Intron of TMPRSS2(-):675bp before exon 3		GRCh37	DELETION	10	23	ERG-TMPRSS2 fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-675:TMPRSS2_c.-149-33521:ERGdel	yes	unknown	2876790	29069	34229	0	26
P-0060615-T01-IM7	SOMATIC	TMPRSS2	ETV4	21	17	42867024	41642479	Intron of TMPRSS2(-):519bp before exon 3	IGR: 37Kb before ETV4(-)		GRCh37	TRANSLOCATION	10	24	ETV4-TMPRSS2 fusion	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV4 (NM_001261437) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41642479::chr21:g.42867024)	yes	unknown	0	0	0	0	24
P-0024686-T01-IM6	SOMATIC	TMPRSS2	PLCD3	21	17	42840366	43208249	Exon 12 of TMPRSS2(-)	Intron of PLCD3(-):1Kb after exon 1		GRCh37	TRANSLOCATION	10	44	PLCD3-TMPRSS2 fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - PLCD3 (NM_133373) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.43208249::chr21:g.42840366)	yes	unknown	0	0	0	0	44
P-0034865-T01-IM6	SOMATIC	TMPRSS2	OSBPL1A	21	18	42874744	21746075	Intron of TMPRSS2(-):5Kb before exon 2	Intron of OSBPL1A(-):467bp after exon 14		GRCh37	TRANSLOCATION	10	33	Protein Fusion: in frame  {OSBPL1A:TMPRSS2}	PRECISE	3to5	OSBPL1A (NM_080597) - TMPRSS2 (NM_001135099) rearrangement: t(18;21)(q11.2;q22.3)(chr18:g.21746075::chr21:g.42874744)	yes	unknown	0	0	0	0	34
P-0025823-T01-IM6	SOMATIC	TMPRSS2	SIMC1	21	5	42870360	175765852	Intron of TMPRSS2(-):244bp before exon 2	Intron of SIMC1(+):2Kb after exon 8		GRCh37	TRANSLOCATION	10	183	Protein Fusion: in frame  {SIMC1:TMPRSS2}	PRECISE	3to3	TMPRSS2 (NM_023034) - SIMC1 (NM_001308195) rearrangement: t(5;21)(q35.2;q22.3)(chr5:g.175765852::chr21:g.42870360)	yes	unknown	0	0	0	0	182
P-0022778-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42878796	140483147	Intron of TMPRSS2(-):1Kb after exon 1	Intron of BRAF(-):190bp before exon 10		GRCh37	TRANSLOCATION	10	51	Protein Fusion: in frame  {TMPRSS2:BRAF}	PRECISE	5to3	TMPRSS2 (NM_001135099) - BRAF (NM_004333) Rearrangement : t(7;21)(q34;q22.3)(chr7:g.140483147::chr21:g.42878796)	yes	unknown	0	0	0	0	56
P-0051214-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42867846	140502592	Intron of TMPRSS2(-):1Kb before exon 3	Intron of BRAF(-):1Kb before exon 6		GRCh37	TRANSLOCATION	10	6	Protein Fusion: in frame  {TMPRSS2:BRAF}	PRECISE	5to3	TMPRSS2 (NM_001135099) - BRAF (NM_004333) fusion: t(7;21)(q34;q22.3)(chr7:g.140502592::chr21:g.42867846)	yes	unknown	0	0	0	0	6
P-0038012-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39936477	42870000	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):45bp after exon 2		GRCh37	DELETION	10	18	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+46:TMPRSS2_c.39+11109:ERGdel	yes	unknown	2933523	34488	34287	0	18
P-0038299-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896349	42867555	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	5	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1050:TMPRSS2_c.39+51237:ERGdel	yes	unknown	2971206	23215	10081	0	5
P-0038584-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831874	42867855	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	50	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon2 fused with ERG exon2 ):c.127-1350:TMPRSS2_c.40-14330:ERGdel	yes	unknown	3035981	27203	29569	0	50
P-0021561-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874362	42867576	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	42	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exon4) :  c.127-1071:TMPRSS2_c.40-56818:ERGdel	yes	unknown	2993214	28535	39786	0	43
P-0039238-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864537	42866985	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):480bp before exon 3		GRCh37	DELETION	0	6	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-480:TMPRSS2_c.18+5750:ERGdel	yes	unknown	3002448	23234	28409	0	6
P-0020843-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878087	42868436	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	44	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.126+1610:TMPRSS2_c.40-60543:ERGdel	yes	unknown	2990349	46877	28818	0	50
P-0041610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39833385	42869118	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):927bp after exon 2		GRCh37	DELETION	10	135	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+928:TMPRSS2_c.19-15841:ERGdel	yes	unknown	3035733	32117	26401	0	141
P-0042990-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39890168	42868022	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	74	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1517:TMPRSS2_c.39+57418:ERGdel	yes	unknown	2977854	34382	22876	0	77
P-0044256-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39848108	42869107	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):938bp after exon 2		GRCh37	DELETION	10	87	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+939:TMPRSS2_c.18+22179:ERGdel	yes	unknown	3020999	35448	35994	0	162
P-0045146-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861396	42869703	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):342bp after exon 2		GRCh37	DELETION	10	223	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon2 fused with ERG exon2): c.126+343:TMPRSS2_c.18+8891:ERGdel	yes	unknown	3008307	32286	55590	0	337
P-0046569-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39837344	42869520	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):525bp after exon 2		GRCh37	DELETION	10	23	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+526:TMPRSS2_c.19-19800:ERGdel	yes	unknown	3032176	32358	23136	0	23
P-0047287-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39859217	42867215	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):710bp before exon 3		GRCh37	DELETION	10	14	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-710:TMPRSS2_c.18+11070:ERGdel	yes	unknown	3007998	25718	21379	0	14
P-0047959-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870113	42868491	Intron of ERG(-):173bp after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	0	39	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1555:TMPRSS2_c.18+174:ERGdel	yes	unknown	2998378	29235	11449	0	43
P-0047763-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854232	42867176	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):671bp before exon 3		GRCh37	DELETION	10	25	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-671:TMPRSS2_c.18+16055:ERGdel	yes	unknown	3012944	27211	16088	0	26
P-0048507-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896265	42867504	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):999bp before exon 3		GRCh37	DELETION	10	15	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-999:TMPRSS2_c.39+51321:ERGdel	yes	unknown	2971239	19877	18774	0	15
P-0049068-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868631	42867241	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):736bp before exon 3		GRCh37	DELETION	6	5	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-736:TMPRSS2_c.18+1656:ERGdel	yes	unknown	2998610	24348	36157	0	4
P-0051162-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39836080	42868272	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	29	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1767:TMPRSS2_c.19-18536:ERGdel	yes	unknown	3032192	19527	31099	0	29
P-0051942-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39830301	42869100	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):945bp after exon 2		GRCh37	DELETION	7	4	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+946:TMPRSS2_c.19-12757:ERGdel	yes	unknown	3038799	28765	20648	0	4
P-0052272-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876052	42867101	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):596bp before exon 3		GRCh37	DELETION	0	38	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-596:TMPRSS2_c.40-58508:ERGdel	yes	unknown	2991049	27119	28191	0	38
P-0052346-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39899935	42869271	Intron of ERG(-):48Kb after exon 3	Intron of TMPRSS2(-):774bp after exon 2		GRCh37	DELETION	10	10	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+775:TMPRSS2_c.39+47651:ERGdel	yes	unknown	2969336	61212	16246	0	10
P-0053728-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39833473	42869499	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):546bp after exon 2		GRCh37	DELETION	10	97	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+547:TMPRSS2_c.19-15929:ERGdel	yes	unknown	3036026	32575	54957	0	99
P-0053926-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39884116	42866932	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):427bp before exon 3		GRCh37	DELETION	10	59	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-427:TMPRSS2_c.39+63470:ERGdel	yes	unknown	2982816	25481	16246	0	60
P-0054068-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39881858	42868507	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	14	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+1539:TMPRSS2_c.40-64314:ERGdel	yes	unknown	2986649	28913	19924	0	14
P-0054785-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39856174	42868194	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	16	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1689:TMPRSS2_c.18+14113:ERGdel	yes	unknown	3012020	35473	36042	0	17
P-0055009-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873792	42867688	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	0	32	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1183:TMPRSS2_c.40-56248:ERGdel	yes	unknown	2993896	21031	28057	0	33
P-0054566-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877343	42867035	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):530bp before exon 3		GRCh37	DELETION	10	64	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-530:TMPRSS2_c.40-59799:ERGdel	yes	unknown	2989692	30939	26868	0	67
P-0055270-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39944377	42869553	Intron of ERG(-):3Kb after exon 3	Intron of TMPRSS2(-):492bp after exon 2		GRCh37	DELETION	10	78	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+493:TMPRSS2_c.39+3209:ERGdel	yes	unknown	2925176	35586	38630	0	82
P-0056177-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39908577	42869025	Intron of ERG(-):39Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	3	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1021:TMPRSS2_c.39+39009:ERGdel	yes	unknown	2960448	40274	11317	0	4
P-0056701-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39929766	42867533	Intron of ERG(-):18Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	0	5	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1028:TMPRSS2_c.39+17820:ERGdel	yes	unknown	2937767	30944	8814	0	5
P-0056943-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39917013	42866635	Intron of ERG(-):31Kb after exon 3	Intron of TMPRSS2(-):130bp before exon 3		GRCh37	DELETION	10	26	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-130:TMPRSS2_c.39+30573:ERGdel	yes	unknown	2949622	31710	31123	0	27
P-0058214-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39817601	42868322	Intron of ERG(-):57bp before exon 2	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	22	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1724:TMPRSS2_c.19-57:ERGdel	yes	unknown	3050721	32813	25065	0	24
P-0059314-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39868193	42869587	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):458bp after exon 2		GRCh37	DELETION	10	75	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+459:TMPRSS2_c.18+2094:ERGdel	yes	unknown	3001394	46634	47503	0	79
P-0059595-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831258	42866993	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):488bp before exon 3		GRCh37	DELETION	10	10	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-488:TMPRSS2_c.19-13714:ERGdel	yes	unknown	3035735	25623	14545	0	11
P-0041461-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854544	42868395	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	34	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1651:TMPRSS2_c.18+15743:ERGdel	yes	unknown	3013851	29691	48976	0	35
P-0043489-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870177	42868685	Intron of ERG(-):109bp after exon 1	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	66	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1361:TMPRSS2_c.18+110:ERGdel	yes	unknown	2998508	28046	26188	0	70
P-0041549-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853771	42867111	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):606bp before exon 3		GRCh37	DELETION	10	40	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-606:TMPRSS2_c.18+16516:ERGdel	yes	unknown	3013340	25707	13573	0	41
P-0060655-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39851784	42869305	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):740bp after exon 2		GRCh37	DELETION	10	23	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+741:TMPRSS2_c.18+18503:ERGdel	yes	unknown	3017521	40964	31834	0	23
P-0060676-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39846686	42867913	Intron of ERG(-):24Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	34	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1408:TMPRSS2_c.18+23601:ERGdel	yes	unknown	3021227	29931	34535	0	36
P-0015673-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39851634	42868022	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	8	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1517:TMPRSS2_c.18+18653:ERGdel	yes	unknown	3016388	23816	17539	0	8
P-0037960-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39911122	42868304	Intron of ERG(-):36Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	70	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1742:TMPRSS2_c.39+36464:ERGdel	yes	unknown	2957182	38009	53663	0	73
P-0040611-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941733	42867713	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	36	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1208:TMPRSS2_c.39+5853:ERGdel	yes	unknown	2925980	25237	27935	0	37
P-0061686-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39927460	42867946	Intron of ERG(-):20Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	26	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1441:TMPRSS2_c.39+20126:ERGdel	yes	unknown	2940486	39609	34308	0	26
P-0037029-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39829127	42868331	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	101	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1715:TMPRSS2_c.19-11583:ERGdel	yes	unknown	3039204	36730	31157	0	115
P-0040749-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39884198	42867570	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	10	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1065:TMPRSS2_c.39+63388:ERGdel	yes	unknown	2983372	32086	9450	0	10
P-0062408-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39880351	42869183	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):862bp after exon 2		GRCh37	DELETION	10	8	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+863:TMPRSS2_c.40-62807:ERGdel	yes	unknown	2988832	39065	29145	0	8
P-0062464-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39822689	42868359	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	90	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1687:TMPRSS2_c.19-5145:ERGdel	yes	unknown	3045670	39776	33247	0	93
P-0063222-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39893842	42867008	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):503bp before exon 3		GRCh37	DELETION	0	11	Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-503:TMPRSS2_c.39+53744:ERGdel	yes	unknown	2973166	35345	27308	0	10
P-0063590-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39839375	42868026	Intron of ERG(-):22Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	44	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1521:TMPRSS2_c.19-21831:ERGdel	yes	unknown	3028651	33032	17816	0	45
P-0063708-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39852169	42867718	Intron of ERG(-):18Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	69	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1213:TMPRSS2_c.18+18118:ERGdel	yes	unknown	3015549	29752	29368	0	70
P-0063894-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39849990	42867841	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	62	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1336:TMPRSS2_c.18+20297:ERGdel	yes	unknown	3017851	25082	16241	0	66
P-0064394-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39819835	42867817	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	69	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1312:TMPRSS2_c.19-2291:ERGdel	yes	unknown	3047982	34901	58445	0	71
P-0065407-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865598	42866632	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):127bp before exon 3		GRCh37	DELETION	10	32	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-127:TMPRSS2_c.18+4689:ERGdel	yes	unknown	3001034	33106	30213	0	33
P-0065554-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882468	42868212	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	74	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1707:TMPRSS2_c.40-64924:ERGdel	yes	unknown	2985744	40923	39930	0	77
P-0065869-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831304	42869355	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):690bp after exon 2		GRCh37	DELETION	10	16	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+691:TMPRSS2_c.19-13760:ERGdel	yes	unknown	3038051	39461	26164	0	16
P-0066769-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39874991	42869929	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):116bp after exon 2		GRCh37	DELETION	10	21	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099)  -ERG ()rearrangement: c.126+117:TMPRSS2_c.40-57447:ERGdel	yes	unknown	2994938	29526	39845	0	22
P-0066733-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39860642	42868387	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	62	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1659:TMPRSS2_c.18+9645:ERGdel	yes	unknown	3007745	35828	42043	0	64
P-0066737-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39885930	42868636	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	37	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1410:TMPRSS2_c.39+61656:ERGdel	yes	unknown	2982706	30923	28539	0	40
P-0066853-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865400	42868519	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	50	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1527:TMPRSS2_c.18+4887:ERGdel	yes	unknown	3003119	28240	31232	0	50
P-0067318-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39877052	42866686	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):181bp before exon 3		GRCh37	DELETION	10	6	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-181:TMPRSS2_c.40-59508:ERGdel	yes	unknown	2989634	24795	29877	0	6
P-0062493-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935362	42867594	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	31	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1089:TMPRSS2_c.39+12224:ERGdel	yes	unknown	2932232	21808	16945	0	31
P-0069200-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39863490	42868105	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	118	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1600:TMPRSS2_c.18+6797:ERGdel	yes	unknown	3004615	24166	35841	0	119
P-0070276-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39821724	42869395	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):650bp after exon 2		GRCh37	DELETION	10	66	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+651:TMPRSS2_c.19-4180:ERGdel	yes	unknown	3047671	39110	62221	0	66
P-0071193-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39910649	42869497	Intron of ERG(-):37Kb after exon 3	Intron of TMPRSS2(-):548bp after exon 2		GRCh37	DELETION	10	25	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+549:TMPRSS2_c.39+36937:ERGdel	yes	unknown	2958848	29810	33568	0	25
P-0063078-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882839	42869050	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):995bp after exon 2		GRCh37	DELETION	10	159	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+996:TMPRSS2_c.39+64747:ERGdel	yes	unknown	2986211	41018	27464	0	164
P-0073160-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39867891	42867943	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	8	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1438:TMPRSS2_c.18+2396:ERGdel	yes	unknown	3000052	45583	18826	0	9
P-0072906-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39866480	42867053	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):548bp before exon 3		GRCh37	DELETION	10	14	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-548:TMPRSS2_c.18+3807:ERGdel	yes	unknown	3000573	26149	25707	0	14
P-0074282-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39886149	42867093	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):588bp before exon 3		GRCh37	DELETION	10	6	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-588:TMPRSS2_c.39+61437:ERGdel	yes	unknown	2980944	24407	11774	0	9
P-0074951-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39936083	42866570	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):65bp before exon 3		GRCh37	DELETION	10	76	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-65:TMPRSS2_c.39+11503:ERGdel	yes	unknown	2930487	18196	22662	0	81
P-0073182-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875220	42868031	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	9	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1526:TMPRSS2_c.40-57676:ERGdel	yes	unknown	2992811	27014	35419	0	10
P-0077716-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39859836	42868225	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	3	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1720:TMPRSS2_c.18+10451:ERGdel	yes	unknown	3008389	44039	21039	0	3
P-0077910-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39859183	42868039	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	84	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1534:TMPRSS2_c.18+11104:ERGdel	yes	unknown	3008856	32327	53742	0	87
P-0076030-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39863613	42867910	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION	10	17	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1405:TMPRSS2_c.18+6674:ERGdel	yes	unknown	3004297	20981	26647	0	17
P-0077575-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876709	42869576	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):469bp after exon 2		GRCh37	DELETION	10	65	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+470:TMPRSS2_c.40-59165:ERGdel	yes	unknown	2992867	40158	51527	0	67
P-0081157-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39887611	42868030	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1525:TMPRSS2_c.39+59975:ERGdel			2980419	24280	28732	0	47
P-0081499-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39857156	42867140	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):635bp before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-635:TMPRSS2_c.18+13131:ERGdel			3009984	29374	19098	0	40
P-0081688-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39928257	42867935	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1430:TMPRSS2_c.39+19329:ERGdel			2939678	25400	21009	0	15
P-0016296-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864325	42867024	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):519bp before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1 with ERG exons 2-10) : c.40-46781:TMPRSS2_c.18+5962:ERGdel			3002699	28434	33851	0	25
P-0027454-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861313	42869338	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):707bp after exon 2		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.126+708:TMPRSS2_c.18+8974:ERGdel			3008025	27075	46169	0	23
P-0030109-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875207	42867208	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):703bp before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2838:TMPRSS2_c.40-58598:ERGdel			2992001	20623	16413	0	9
P-0030812-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874424	42867559	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1054:TMPRSS2_c.40-56880:ERGdel			2993135	33707	18920	0	21
P-0083691-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39846191	42867946	Intron of ERG(-):24Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1441:TMPRSS2_c.18+24096:ERGdel			3021755	41125	34678	0	27
P-0081918-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39863290	42868401	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1645:TMPRSS2_c.18+6997:ERGdel			3005111	35853	38137	0	34
P-0084613-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39848100	42866665	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):160bp before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-160:TMPRSS2_c.18+22187:ERGdel			3018565	27361	17439	0	8
P-0084999-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39888859	42868264	Intron of ERG(-):59Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1759:TMPRSS2_c.39+58727:ERGdel			2979405	38414	37157	0	17
P-0085172-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39877997	42867578	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1073:TMPRSS2_c.40-60453:ERGdel			2989581	32765	17759	0	15
P-0081460-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39874622	42869222	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):823bp after exon 2		GRCh37	DELETION			Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+824:TMPRSS2_c.40-57078:ERGdel			2994600	39680	28988	0	19
P-0026152-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42872732	14017550	Intron of TMPRSS2(-):3Kb before exon 2	Intron of ETV1(-):445bp before exon 5		GRCh37	TRANSLOCATION	10	87	Protein Fusion: in frame  {TMPRSS2:ETV1}	PRECISE	5to3	TMPRSS2 (NM_005656) and ETV1 (NM_001163147) Fusion (TMPRSS2 exon2 with ETV1 exon5) : t(7;21)(p21.3;q22.2)(chr7:g.14017550::chr21:g.42872732)	yes	unknown	0	0	0	0	91
P-0049966-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42872833	14007075	Intron of TMPRSS2(-):3Kb before exon 2	Intron of ETV1(-):10Kb after exon 5		GRCh37	TRANSLOCATION	0	27	Protein Fusion: in frame  {TMPRSS2:ETV1}	IMPPRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14007075::chr21:g.42872833)	yes	unknown	0	0	0	0	28
P-0065149-T01-IM7	SOMATIC	TMPRSS2	ETV1	21	7	42872304	14018849	Intron of TMPRSS2(-):2Kb before exon 2	Intron of ETV1(-):2Kb before exon 5		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {TMPRSS2:ETV1}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14018849::chr21:g.42872304)	yes	unknown	0	0	0	0	11
P-0075312-T01-IM7	SOMATIC	TMPRSS2	ETV1	21	7	42875469	14016703	Intron of TMPRSS2(-):4Kb after exon 1	Intron of ETV1(-):348bp after exon 5		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {TMPRSS2:ETV1}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14016703::chr21:g.42875469)	yes	unknown	0	0	0	0	12
P-0050644-T01-IM6	SOMATIC	TMPRSS2	ETV5	21	3	42874002	185800964	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ETV5(-):2Kb before exon 6		GRCh37	TRANSLOCATION	10	48	Protein Fusion: in frame  {TMPRSS2:ETV5}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) fusion: t(3;21)(q27.2;q22.3)(chr3:g.185800964::chr21:g.42874002)	yes	unknown	0	0	0	0	48
P-0061363-T01-IM7	SOMATIC	TMPRSS2	ETV5	21	3	42871463	185809171	Intron of TMPRSS2(-):1Kb before exon 2	Intron of ETV5(-):10Kb before exon 6		GRCh37	TRANSLOCATION	10	81	Protein Fusion: in frame  {TMPRSS2:ETV5}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) fusion: t(3;21)(q27.2;q22.3)(chr3:g.185809171::chr21:g.42871463)	yes	unknown	0	0	0	0	81
P-0052122-T01-IM6	SOMATIC	TMPRSS2	MGA	21	15	42851086	41968006	Intron of TMPRSS2(-):12bp after exon 7	Intron of MGA(+):6Kb after exon 2		GRCh37	TRANSLOCATION	10	12	Protein Fusion: in frame  {TMPRSS2:MGA}	PRECISE	5to5	TMPRSS2 (NM_001135099) - MGA (NM_001164273) rearrangement: t(15;21)(q15.1;q22.3)(chr15:g.41968006::chr21:g.42851086)	yes	unknown	0	0	0	0	16
P-0044288-T01-IM6	SOMATIC	TMPRSS2	MPP5	21	14	42869498	67791033	Intron of TMPRSS2(-):547bp after exon 2	Intron of MPP5(+):504bp after exon 14		GRCh37	TRANSLOCATION	10	201	Protein Fusion: in frame  {TMPRSS2:MPP5}	PRECISE	5to5	TMPRSS2 (NM_001135099) - MPP5 (NM_022474) rearrangement: t(14;21)(q23.3;q22.3)(chr14:g.67791033::chr21:g.42869498)	yes	unknown	0	0	0	0	251
P-0045039-T01-IM6	SOMATIC	TMPRSS2	SH3GL3	21	15	42872075	84263952	Intron of TMPRSS2(-):2Kb before exon 2	Intron of SH3GL3(+):6Kb after exon 11		GRCh37	TRANSLOCATION	10	17	Protein Fusion: in frame  {TMPRSS2:SH3GL3}	PRECISE	5to5	TMPRSS2 (NM_001135099) - SH3GL3 (NM_003027) rearrangement: t(15;21)(q25.2;q22.3)(chr15:g.84263952::chr21:g.42872075)	yes	unknown	0	0	0	0	17
P-0006837-T01-IM5	SOMATIC	TMPRSS2	NLGN1	21	3	42872495	173935988	Intron of TMPRSS2(-): 2Kb before exon 2	Intron of NLGN1(+): 57Kb before exon 5		GRCh37	TRANSLOCATION	21	12	Protein fusion: in frame (NLGN1-TMPRSS2)	PRECISE	3to3	TMPRSS2(NM_001135099.1) - NLGN1(NM_014932.2) translocation :  t(3;21)(q26.31;q22.3)(c.647-57117:NLGN1::c.56-2379:TMPRSS2)	yes	unknown	0	0	0	0	12
P-0000224-T01-IM3	SOMATIC	TMPRSS2	RIPK4	21	21	42871370	43169120	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of RIPK4(-): 194bp after exon 4		GRCh37	DELETION			Protein fusion: in frame (RIPK4-TMPRSS2)	PRECISE	3to5	TMPRSS2 (NM_001135099) - RIPK4 (NM_012309) 297750bp Deletion:  c.56-1254G_c.1632-813del			297750	18360	27110	0	11
P-0014395-T01-IM6	SOMATIC	TMPRSS2	ARHGAP26	21	5	42868024	142324441	Intron of TMPRSS2(-): 2Kb before exon 3	Intron of ARHGAP26(+): 13Kb after exon 11		GRCh37	TRANSLOCATION	31	24	Protein fusion: in frame (TMPRSS2-ARHGAP26)	PRECISE	5to5	TMPRSS2 (NM_001135099) - ARHGAP26 (NM_015071) fusion (TMPRSS2 exons 1-2 fused in-frame to ARHGAP26 exons 12-23): t(5;21)(q31.3;q22.3)(chr5:g.142324441::chr21:g.42868024)	yes	unknown	0	0	0	0	24
P-0006603-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39820342	42869492	Intron of ERG(-): 3Kb before exon 4	Intron of TMPRSS2(-): 554bp after exon 2		GRCh37	DELETION	64	96	Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-10): c.126+554:TMPRSS2_c.40-2798:ERGdel	yes	unknown	3049150	43363	67013	0	87
P-0008928-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39886642	42867842	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION	0	59	Protein fusion: in frame (TMPRSS2-ERG)	IMPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion ()TMPRSS2 exons 1-2 fused with ERG exons 4-11) :  c.127-1337:TMPRSS2_c.39+60944:ERGdel	yes	unknown	2981200	54738	47687	0	56
P-0008960-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39885570	42867649	Intron of ERG(-): 62Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3		GRCh37	DELETION			Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11): c.127-1144:TMPRSS2_c.39+62016:ERGdel			2982079	41750	26859	0	48
P-0009786-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39878096	42869553	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 493bp after exon 2		GRCh37	DELETION			Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2(NM_001135099)  -ERG (NM_004449)Fusion (TMPRS22 exon1 fused with ERG exons  4-10) :  c.126+493:TMPRSS2_c.40-60552:ERGdel			2991457	47750	42106	0	56
P-0010071-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39835555	42869039	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2		GRCh37	DELETION			Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 to 2 fused to ERG exons 3 to 10) : c.126+1007:TMPRSS2_c.19-18011:ERGdel			3033484	44049	38597	0	16
P-0012914-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39863191	42869111	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 935bp after exon 2		GRCh37	DELETION			Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10): c.126+935:TMPRSS2_c.18+7096:ERGdel			3005920	63270	76384	0	85
P-0013791-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39882496	42869530	Intron of ERG(-): 65Kb before exon 4	Intron of TMPRSS2(-): 516bp after exon 2		GRCh37	DELETION			Protein fusion: in frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.126+516:TMPRSS2_c.40-64952:ERGdel			2987034	34532	30074	0	4
P-0001449-T01-IM3	SOMATIC	TMPRSS2	ETV1	21	7	42871486	14003133	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of ETV1(-): 14Kb after exon 6		GRCh37	TRANSLOCATION	22	14	Protein fusion: in frame (TMPRSS2-ETV1)	PRECISE	5to3	None	yes	unknown	0	0	0	0	0
P-0008669-T01-IM5	SOMATIC	TMPRSS2	ETV1	21	7	42872919	13999067	Intron of TMPRSS2(-): 3Kb before exon 2	Intron of ETV1(-): 18Kb after exon 6		GRCh37	TRANSLOCATION	0	7	Protein fusion: in frame (TMPRSS2-ETV1)	IMPRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) in frame fusion (TMPRSS2 exon 1 fused with ETV1 exons 7-12): t(7;21)(p21.2;q22.3)(chr7:g.13999067::chr21:g.42872919)	yes	unknown	0	0	0	0	7
P-0006689-T01-IM5	SOMATIC	TMPRSS2	MLLT4	21	6	42875775	168293792	Intron of TMPRSS2(-): 4Kb after exon 1	Intron of MLLT4(+): 750bp before exon 9		GRCh37	TRANSLOCATION			Protein fusion: in frame (TMPRSS2-MLLT4)	PRECISE	5to5	TMPRSS2 (NM_001135099) - MLLT4 (NM_001207008) rearrangement : t(6;21)(q27;q22.3)(chr6:168293792::chr21:42875775)			0	0	0	0	14
P-0015850-T01-IM6	SOMATIC	TMPRSS2	SGMS2	21	4	42840444	108828375	Exon 12 of TMPRSS2(-)	Intron of SGMS2(+):1Kb before exon 6		GRCh37	TRANSLOCATION	105	49	Protein Fusion: mid-exon  {SGMS2:TMPRSS2}	PRECISE	3to3		yes	unknown	0	0	0		
P-0060028-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39817492	42870301	Exon 2 of ERG(-)	Intron of TMPRSS2(-):185bp before exon 2		GRCh37	DELETION	10	133	Protein Fusion: mid-exon  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-185:TMPRSS2_c.71:ERGdel	yes	unknown	3052809	22333	65798	0	147
P-0053329-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39823286	42866336	Intron of ERG(-):6Kb before exon 2	Exon 3 of TMPRSS2(-)		GRCh37	DELETION	10	33	Protein Fusion: mid-exon  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.296:TMPRSS2_c.19-5742:ERGdel	yes	unknown	3043050	24364	14352	0	40
P-0022117-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862243	42866328	Intron of ERG(-):8Kb after exon 1	Exon 3 of TMPRSS2(-)		GRCh37	DELETION			Protein Fusion: mid-exon  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-3 fused to ERG exons 2-10): c.304:TMPRSS2_c.18+8044:ERGdel			3004085	24314	5357	0	50
P-0073278-T01-IM7	SOMATIC	TMPRSS2	ETV1	21	7	42870095	14007004	Exon 2 of TMPRSS2(-)	Intron of ETV1(-):10Kb after exon 5		GRCh37	TRANSLOCATION	10	168	Protein Fusion: mid-exon  {TMPRSS2:ETV1}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14007004::chr21:g.42870095)	yes	unknown	0	0	0	0	183
P-0024686-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42840400	41615041	Exon 12 of TMPRSS2(-)	Intron of ETV4(-):1Kb before exon 5		GRCh37	TRANSLOCATION	10	15	Protein Fusion: mid-exon  {TMPRSS2:ETV4}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV4 (NM_001986) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41615041::chr21:g.42840400)	yes	unknown	0	0	0	0	17
P-0072907-T01-IM7	SOMATIC	TMPRSS2		21	6	42843872	57299292	Exon 10 of TMPRSS2(-)	Intron of PRIM2(+):52Kb after exon 7		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {TMPRSS2:PRIM2}	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(p11.2;q22.3)(chr6:g.57299292::chr21:g.42843872)			0	0	0	0	15
P-0073847-T01-IM7	SOMATIC	TMPRSS2	SP3	21	2	42843841	174817715	Exon 10 of TMPRSS2(-)	Intron of SP3(-):2Kb after exon 2		GRCh37	TRANSLOCATION	9	6	Protein Fusion: mid-exon  {TMPRSS2:SP3}	PRECISE	5to3	TMPRSS2 (NM_001135099) - SP3 (NM_003111) rearrangement: t(2;21)(q31.1;q22.3)(chr2:g.174817715::chr21:g.42843841)	yes	unknown	0	0	0	0	6
P-0008304-T01-IM5	SOMATIC	TMPRSS2	MYL5	21	4	42871261	674327	Intron of TMPRSS2(-): 1Kb before exon 2	Exon 5 of MYL5(+)		GRCh37	TRANSLOCATION	17	24	Protein fusion: mid-exon (MYL5-TMPRSS2)	PRECISE	3to3	MYL5 (NM_002477) - TMPRSS2 (NM_001135099) rearrangement : t(4;21)(p16.3;q22.3)(chr4:g.674327::chr21:g.42871261)	yes	unknown	0	0	0	0	24
P-0017987-T01-IM6	SOMATIC	TMPRSS2	C1orf112	21	1	42871817	169817552	Intron of TMPRSS2(-):2Kb before exon 2	Intron of C1orf112(+):608bp after exon 20		GRCh37	TRANSLOCATION	10	170	Protein Fusion: out of frame  {C1orf112:TMPRSS2}	PRECISE	3to3	C1orf112 (NM_018186) - TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q24.2;q22.3)(chr1:g.169817552::chr21:g.42871817)	yes	unknown	0	0	0	0	169
P-0018122-T01-IM6	SOMATIC	TMPRSS2	ABCG1	21	21	42851084	43627952	Intron of TMPRSS2(-):14bp after exon 7	Intron of ABCG1(+):6Kb after exon 2		GRCh37	INVERSION	10	38	Protein Fusion: out of frame  {TMPRSS2:ABCG1}	PRECISE	5to5	TMPRSS2 (NM_001135099) - ABCG1 (NM_207627) Rearrangement: c.794+15:TMPRSS2_c.48+6119:ABCG1inv	yes	unknown	776868	115502	161419	0	48
P-0064697-T01-IM7	SOMATIC	TMPRSS2	ARRB1	21	11	42877301	75013239	Intron of TMPRSS2(-):3Kb after exon 1	Intron of ARRB1(-):12Kb before exon 2		GRCh37	TRANSLOCATION	10	11	Protein Fusion: out of frame  {TMPRSS2:ARRB1}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ARRB1 (NM_004041) rearrangement: t(11;21)(q13.4;q22.3)(chr11:g.75013239::chr21:g.42877301)	yes	unknown	0	0	0	0	11
P-0018524-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42873801	140490337	Intron of TMPRSS2(-):4Kb before exon 2	Intron of BRAF(-):3Kb before exon 9		GRCh37	TRANSLOCATION	10	89	Protein Fusion: out of frame  {TMPRSS2:BRAF}	PRECISE	5to3	TMPRSS2 (NM_001135099) - BRAF (NM_004333) Rearrangement : t(21;7)(q22.3;q34)(chr21:g.42873801::chr7:g.140490337)	yes	unknown	0	0	0	0	98
P-0022953-T01-IM6	SOMATIC	TMPRSS2	CERS6	21	2	42873665	169560626	Intron of TMPRSS2(-):4Kb before exon 2	Intron of CERS6(+):9Kb after exon 6		GRCh37	TRANSLOCATION	10	14	Protein Fusion: out of frame  {TMPRSS2:CERS6}	PRECISE	5to5	TMPRSS2 (NM_001135099) - CERS6 (NM_203463) rearrangement: t(2;21)(q24.3;q22.3)(chr2:g.169560626::chr21:g.42873665)	yes	unknown	0	0	0	0	33
P-0038348-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877054	42875885	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	156	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+3992:TMPRSS2_c.40-59510:ERGdel	yes	unknown	2998831	87369	82713	0	164
P-0038415-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39832393	42877782	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	90	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2095:TMPRSS2_c.19-14849:ERGdel	yes	unknown	3045389	126384	74397	0	92
P-0038808-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39845127	42876795	Intron of ERG(-):25Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	115	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon2) :c.55+3082:TMPRSS2_c.18+25160:ERGdel	yes	unknown	3031668	10603	50363	0	126
P-0039047-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862212	42874349	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	47	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4233:TMPRSS2_c.18+8075:ERGdel	yes	unknown	3012137	66945	69329	0	47
P-0039508-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39840410	42845230	Intron of ERG(-):23Kb before exon 2	Intron of TMPRSS2(-):21bp after exon 9		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.1010+22:TMPRSS2_c.19-22866:ERGdel	yes	unknown	3004820	14804	8464	0	33
P-0020984-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861827	42871570	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	53	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-1454:TMPRSS2_c.18+8460:ERGdel	yes	unknown	3009743	65465	47999	0	57
P-0021297-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39803320	42869175	Intron of ERG(-):8Kb before exon 3	Intron of TMPRSS2(-):870bp after exon 2		GRCh37	DELETION	10	27	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exons 1-2 fused with ERG exons 3-10):c.126+871:TMPRSS2_c.237-7837:ERGdel	yes	unknown	3065855	53435	16854	0	29
P-0039698-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866680	42874374	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	3	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4258:TMPRSS2_c.18+3607:ERGdel	yes	unknown	3007694	88259	32619	0	3
P-0039689-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39818672	42870319	Intron of ERG(-):1Kb before exon 2	Intron of TMPRSS2(-):203bp before exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-203:TMPRSS2_c.19-1128:ERGdel	yes	unknown	3051647	42480	31644	0	11
P-0000631-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39889111	42872632	Intron of ERG(-):58Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	100	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2516:TMPRSS2_c.39+58475:ERGdel	yes	unknown	2983521	77383	55278	0	106
P-0039771-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39883192	42872655	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	74	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2539:TMPRSS2_c.39+64394:ERGdel	yes	unknown	2989463	63679	66250	0	77
P-0034079-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887273	42872293	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2177:TMPRSS2_c.39+60313:ERGdel	yes	unknown	2985020	69570	16172	0	12
P-0034686-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877430	42875062	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 with ERG exon1) : c.55+4815:TMPRSS2_c.40-59886:ERGdel	yes	unknown	2997632	70379	47511	0	30
P-0040595-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868848	42870360	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):244bp before exon 2		GRCh37	DELETION	10	35	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-244:TMPRSS2_c.18+1439:ERGdel	yes	unknown	3001512	55452	23396	0	39
P-0040610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876990	42877236	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	6	2	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2641:TMPRSS2_c.40-59446:ERGdel	yes	unknown	3000246	99728	110036	0	2
P-0030384-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39934109	42871372	Intron of ERG(-):13Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	0	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1256:TMPRSS2_c.39+13477:ERGdel	yes	unknown	2937263	54589	18612	0	30
P-0030645-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39930064	42870774	Intron of ERG(-):18Kb after exon 3	Intron of TMPRSS2(-):658bp before exon 2		GRCh37	DELETION	10	27	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-658:TMPRSS2_c.39+17522:ERGdel	yes	unknown	2940710	38722	38541	0	29
P-0042826-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855768	42870856	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):740bp before exon 2		GRCh37	DELETION	10	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-740:TMPRSS2_c.18+14519:ERGdel	yes	unknown	3015088	49916	41115	0	32
P-0043029-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39857064	42878149	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	67	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1728:TMPRSS2_c.18+13223:ERGdel	yes	unknown	3021085	107925	110951	0	72
P-0043416-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831305	42873916	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	24	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3800:TMPRSS2_c.19-13761:ERGdel	yes	unknown	3042611	66043	77485	0	25
P-0045291-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861989	42875700	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	63	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4177:TMPRSS2_c.18+8298:ERGdel	yes	unknown	3013711	81780	67006	0	65
P-0046315-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878565	42878705	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	24	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+1172:TMPRSS2_c.40-61021:ERGdel	yes	unknown	3000140	84968	45854	0	24
P-0046362-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875970	42877789	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	47	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2088:TMPRSS2_c.40-58426:ERGdel	yes	unknown	3001819	86337	85361	0	52
P-0046586-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39832188	42873563	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3447:TMPRSS2_c.19-14644:ERGdel	yes	unknown	3041375	57427	7089	0	12
P-0046713-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874989	42870458	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):342bp before exon 2		GRCh37	DELETION	10	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-342:TMPRSS2_c.40-57445:ERGdel	yes	unknown	2995469	39726	25273	0	8
P-0046838-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39835864	42870435	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):319bp before exon 2		GRCh37	DELETION	10	69	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-319:TMPRSS2_c.19-18320:ERGdel	yes	unknown	3034571	35877	53506	0	71
P-0046881-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855402	42877358	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	194	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+2519:TMPRSS2_c.18+14885:ERGdel	yes	unknown	3021956	75920	137441	0	210
P-0047211-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868509	42875942	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	56	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+3935:TMPRSS2_c.18+1778:ERGdel	yes	unknown	3007433	75644	29807	0	58
P-0047288-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874515	42877016	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	0	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2861:TMPRSS2_c.40-56971:ERGdel	yes	unknown	3002501	91583	44418	0	20
P-0048072-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39888058	42870118	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2bp before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-2:TMPRSS2_c.39+59528:ERGdel	yes	unknown	2982060	41981	34802	0	31
P-0048610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874432	42866183	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):99bp after exon 3		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.349+100:TMPRSS2_c.40-56888:ERGdel	yes	unknown	2991751	29152	15718	0	20
P-0048955-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39800474	42868979	Intron of ERG(-):5Kb before exon 3	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	10	34	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1067:TMPRSS2_c.237-4991:ERGdel	yes	unknown	3068505	31412	50752	0	35
P-0048998-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39820671	42872870	Intron of ERG(-):3Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	9	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2754:TMPRSS2_c.19-3127:ERGdel	yes	unknown	3052199	52798	62319	0	9
P-0049411-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39859042	42871333	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	21	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1217:TMPRSS2_c.18+11245:ERGdel	yes	unknown	3012291	41058	38317	0	21
P-0050249-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39837619	42878888	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):988bp after exon 1		GRCh37	DELETION	10	58	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+989:TMPRSS2_c.19-20075:ERGdel	yes	unknown	3041269	85523	101891	0	60
P-0050285-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39893957	42870262	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):146bp before exon 2		GRCh37	DELETION	10	45	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-146:TMPRSS2_c.39+53629:ERGdel	yes	unknown	2976305	40383	26223	0	45
P-0050289-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876747	42872737	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	73	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-2621:TMPRSS2_c.40-59203:ERGdel	yes	unknown	2995990	54324	72899	0	74
P-0050352-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39936486	42875305	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4572:TMPRSS2_c.39+11100:ERGdel	yes	unknown	2938819	28529	66405	0	20
P-0050445-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864235	42874836	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	0	9	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-4720:TMPRSS2_c.18+6052:ERGdel	yes	unknown	3010601	58625	34170	0	10
P-0050552-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853015	42872979	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	0	59	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2863:TMPRSS2_c.18+17272:ERGdel	yes	unknown	3019964	69842	46447	0	63
P-0050705-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39879367	42873192	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	22	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3076:TMPRSS2_c.40-61823:ERGdel	yes	unknown	2993825	61051	43578	0	25
P-0050970-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39946387	42871401	Intron of ERG(-):1Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	140	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1285:TMPRSS2_c.39+1199:ERGdel	yes	unknown	2925014	45434	51393	0	147
P-0051550-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862623	42871766	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	8	5	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1650:TMPRSS2_c.18+7664:ERGdel	yes	unknown	3009143	57808	46833	0	5
P-0051585-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39883668	42878040	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+1837:TMPRSS2_c.39+63918:ERGdel	yes	unknown	2994372	92529	105836	0	18
P-0051599-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39869883	42875395	Intron of ERG(-):403bp after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	8	4	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4482:TMPRSS2_c.18+404:ERGdel	yes	unknown	3005512	74179	97203	0	4
P-0051999-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882655	42873584	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	87	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3468:TMPRSS2_c.39+64931:ERGdel	yes	unknown	2990929	70555	86678	0	92
P-0051820-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39850444	42870953	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):837bp before exon 2		GRCh37	DELETION	10	26	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-837:TMPRSS2_c.18+19843:ERGdel	yes	unknown	3020509	44910	31895	0	26
P-0051910-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831547	42870829	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):713bp before exon 2		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-713:TMPRSS2_c.19-14003:ERGdel	yes	unknown	3039282	38608	33596	0	17
P-0051912-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39848605	42870878	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):762bp before exon 2		GRCh37	DELETION	10	31	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-762:TMPRSS2_c.18+21682:ERGdel	yes	unknown	3022273	51859	38752	0	32
P-0052131-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39812936	42872211	Intron of ERG(-):4Kb after exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	21	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2095:TMPRSS2_c.236+4391:ERGdel	yes	unknown	3059275	62217	42715	0	23
P-0052511-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914902	42874197	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4081:TMPRSS2_c.39+32684:ERGdel	yes	unknown	2959295	81492	76322	0	8
P-0053046-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39922280	42871329	Intron of ERG(-):25Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	0	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1213:TMPRSS2_c.39+25306:ERGdel	yes	unknown	2949049	59587	58737	0	16
P-0052970-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39842017	42873941	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	103	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-3825:TMPRSS2_c.19-24473:ERGdel	yes	unknown	3031924	94891	102112	0	107
P-0052999-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862239	42872729	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	43	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2613:TMPRSS2_c.18+8048:ERGdel	yes	unknown	3010490	72677	66125	0	43
P-0053406-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39856865	42878668	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	68	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1209:TMPRSS2_c.18+13422:ERGdel	yes	unknown	3021803	123028	87762	0	76
P-0053239-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896065	42873661	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3545:TMPRSS2_c.39+51521:ERGdel	yes	unknown	2977596	65004	72066	0	12
P-0053704-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864944	42878585	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1292:TMPRSS2_c.18+5343:ERGdel	yes	unknown	3013641	95215	127380	0	12
P-0053849-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864104	42870841	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):725bp before exon 2		GRCh37	DELETION	10	26	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-725:TMPRSS2_c.18+6183:ERGdel	yes	unknown	3006737	50851	46434	0	26
P-0054040-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39946095	42874257	Intron of ERG(-):1Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	124	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4141:TMPRSS2_c.39+1491:ERGdel	yes	unknown	2928162	83452	77027	0	128
P-0054445-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39834004	42875935	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	92	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3942:TMPRSS2_c.19-16460:ERGdel	yes	unknown	3041931	71897	88024	0	111
P-0054652-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877183	42874927	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	44	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4811:TMPRSS2_c.40-59639:ERGdel	yes	unknown	2997744	66413	85885	0	44
P-0054692-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39828714	42875604	Intron of ERG(-):11Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4273:TMPRSS2_c.19-11170:ERGdel	yes	unknown	3046890	147174	33578	0	27
P-0054972-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39808001	42878690	Intron of ERG(-):9Kb after exon 2	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1187:TMPRSS2_c.236+9326:ERGdel	yes	unknown	3070689	86869	92554	0	14
P-0055059-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866010	42870783	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):667bp before exon 2		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-667:TMPRSS2_c.40-48466:ERGdel	yes	unknown	3004773	48703	43264	0	47
P-0055138-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876085	42875130	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	35	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4747:TMPRSS2_c.40-58541:ERGdel	yes	unknown	2999045	84678	78042	0	35
P-0054077-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39827435	42876255	Intron of ERG(-):10Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	8	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3622:TMPRSS2_c.19-9891:ERGdel	yes	unknown	3048820	91527	33690	0	9
P-0055707-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876892	42874865	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	72	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4749:TMPRSS2_c.40-59348:ERGdel	yes	unknown	2997973	89030	74375	0	74
P-0055712-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39834430	42875362	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	65	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4515:TMPRSS2_c.19-16886:ERGdel	yes	unknown	3040932	81312	70496	0	66
P-0055380-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853252	42872164	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	21	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2048:TMPRSS2_c.18+17035:ERGdel	yes	unknown	3018912	64565	56613	0	24
P-0056372-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39822698	42872199	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2083:TMPRSS2_c.19-5154:ERGdel	yes	unknown	3049501	55441	53610	0	12
P-0056686-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914298	42872567	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	67	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2451:TMPRSS2_c.39+33288:ERGdel	yes	unknown	2958269	57184	49534	0	71
P-0056842-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39928395	42871428	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	101	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1312:TMPRSS2_c.39+19191:ERGdel	yes	unknown	2943033	53379	23761	0	106
P-0057447-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39858400	42874176	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	77	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4060:TMPRSS2_c.18+11887:ERGdel	yes	unknown	3015776	83070	76044	0	82
P-0057757-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39826159	42871050	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):934bp before exon 2		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-934:TMPRSS2_c.19-8615:ERGdel	yes	unknown	3044891	56574	40119	0	12
P-0057793-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864374	42871271	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	75	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1155:TMPRSS2_c.18+5913:ERGdel	yes	unknown	3006897	35748	42788	0	78
P-0058200-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854724	42870336	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):220bp before exon 2		GRCh37	DELETION	10	177	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-220:TMPRSS2_c.18+15563:ERGdel	yes	unknown	3015612	48977	64620	0	191
P-0058957-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39804701	42871565	Intron of ERG(-):9Kb before exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	60	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1449:TMPRSS2_c.237-9218:ERGdel	yes	unknown	3066864	42466	38310	0	62
P-0059425-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39836774	42874735	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	92	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4619:TMPRSS2_c.19-19230:ERGdel	yes	unknown	3037961	98244	66875	0	114
P-0059628-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39915317	42874796	Intron of ERG(-):32Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	31	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4680:TMPRSS2_c.39+32269:ERGdel	yes	unknown	2959479	48283	64585	0	32
P-0059796-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39899208	42872204	Intron of ERG(-):48Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	8	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2088:TMPRSS2_c.39+48378:ERGdel	yes	unknown	2972996	54335	46219	0	7
P-0059769-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39913759	42874733	Intron of ERG(-):34Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4617:TMPRSS2_c.39+33827:ERGdel	yes	unknown	2960974	60608	48608	0	10
P-0060161-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935300	42877348	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	0	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2529:TMPRSS2_c.39+12286:ERGdel	yes	unknown	2942048	90231	41334	0	26
P-0060207-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39868977	42871230	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1114:TMPRSS2_c.18+1310:ERGdel	yes	unknown	3002253	45191	26201	0	27
P-0060408-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39841878	42876301	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	44	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3576:TMPRSS2_c.19-24334:ERGdel	yes	unknown	3034423	86831	71765	0	46
P-0015058-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861753	42870567	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):451bp before exon 2		GRCh37	DELETION	10	173	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-451:TMPRSS2_c.18+8534:ERGdel	yes	unknown	3008814	34660	42623	0	178
P-0040180-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39818937	42873885	Intron of ERG(-):1Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	3	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3769:TMPRSS2_c.19-1393:ERGdel	yes	unknown	3054948	55697	43700	0	4
P-0041602-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39940597	42875730	Intron of ERG(-):7Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	87	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4147:TMPRSS2_c.39+6989:ERGdel	yes	unknown	2935133	75837	87930	0	88
P-0044288-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866826	42875413	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	132	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4464:TMPRSS2_c.18+3461:ERGdel	yes	unknown	3008587	60146	119414	0	141
P-0037151-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39835707	42876100	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	56	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 with ERG exon2): c.55+3777:TMPRSS2_c.40-18163::ERGdel	yes	unknown	3040393	57361	52755	0	62
P-0037177-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39826705	42871794	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	56	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1678:TMPRSS2_c.19-9161:ERGdel	yes	unknown	3045089	53807	27932	0	57
P-0043904-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39807153	42870229	Intron of ERG(-):10Kb after exon 2	Intron of TMPRSS2(-):113bp before exon 2		GRCh37	DELETION	0	8	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-113:TMPRSS2_c.236+10174:ERGdel	yes	unknown	3063076	37324	34025	0	8
P-0059934-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882213	42875622	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	54	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4255:TMPRSS2_c.40-64669:ERGdel	yes	unknown	2993409	96579	82615	0	55
P-0060653-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935118	42879091	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):785bp after exon 1		GRCh37	DELETION	10	93	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+786:TMPRSS2_c.39+12468:ERGdel	yes	unknown	2943973	96913	93631	0	95
P-0060407-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864188	42872597	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2481:TMPRSS2_c.18+6099:ERGdel	yes	unknown	3008409	53297	61874	0	30
P-0059855-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865680	42877029	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	14	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2848:TMPRSS2_c.18+4607:ERGdel	yes	unknown	3011349	113775	54871	0	15
P-0037283-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39823481	42872457	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	15	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2450:TMPRSS2_c.19-5937:ERGdel	yes	unknown	3048976	65011	53142	0	17
P-0039753-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887474	42871357	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	49	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1241:TMPRSS2_c.39+60112:ERGdel	yes	unknown	2983883	44262	38723	0	51
P-0042341-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39880122	42874194	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4078:TMPRSS2_c.40-62578:ERGdel	yes	unknown	2994072	57355	26785	0	47
P-0043336-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831828	42875193	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	165	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4684:TMPRSS2_c.19-14284:ERGdel	yes	unknown	3043365	73859	90154	0	171
P-0045358-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39799430	42873613	Intron of ERG(-):4Kb before exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	95	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3497:TMPRSS2_c.237-3947:ERGdel	yes	unknown	3074183	66940	70364	0	98
P-0045546-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875013	42870517	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):401bp before exon 2		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-401:TMPRSS2_c.40-57469:ERGdel	yes	unknown	2995504	31765	29212	0	32
P-0042252-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39841609	42873520	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	0	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3404:TMPRSS2_c.19-24065:ERGdel	yes	unknown	3031911	38082	79740	0	11
P-0044258-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39927543	42876582	Intron of ERG(-):20Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3295:TMPRSS2_c.39+20043:ERGdel	yes	unknown	2949039	83627	93040	0	6
P-0061669-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39909116	42874913	Intron of ERG(-):38Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4797:TMPRSS2_c.39+38470:ERGdel	yes	unknown	2965797	67363	64570	0	29
P-0061675-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876719	42875811	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4066:TMPRSS2_c.40-59175:ERGdel	yes	unknown	2999092	106319	74507	0	46
P-0037750-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861145	42876260	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3617:TMPRSS2_c.18+9142:ERGdel	yes	unknown	3015115	107912	38570	0	19
P-0041027-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39869219	42875665	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	105	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4212:TMPRSS2_c.18+1068:ERGdel	yes	unknown	3006446	61551	55310	0	106
P-0042378-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853572	42877942	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1935:TMPRSS2_c.18+16715:ERGdel	yes	unknown	3024370	94492	58996	0	20
P-0044811-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39816407	42875267	Intron of ERG(-):919bp after exon 2	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	7	3	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4610:TMPRSS2_c.236+920:ERGdel	yes	unknown	3058860	77771	80906	0	3
P-0021782-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39917211	42872868	Intron of ERG(-):30Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	125	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon4) : c.56-2752:TMPRSS2_c.39+30375:ERGdel	yes	unknown	2955657	80541	93088	0	138
P-0037423-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39805396	42873112	Intron of ERG(-):10Kb before exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	16	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2996:TMPRSS2_c.237-9913:ERGdel	yes	unknown	3067716	71140	38792	0	16
P-0037701-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39798230	42869522	Intron of ERG(-):3Kb before exon 3	Intron of TMPRSS2(-):523bp after exon 2		GRCh37	DELETION	0	62	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+524:TMPRSS2_c.237-2747:ERGdel	yes	unknown	3071292	43754	45067	0	65
P-0040509-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941156	42874439	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	48	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4323:TMPRSS2_c.39+6430:ERGdel	yes	unknown	2933283	54467	59984	0	54
P-0041196-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878073	42875776	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	6	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4101:TMPRSS2_c.40-60529:ERGdel	yes	unknown	2997703	79649	91903	0	7
P-0042276-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855504	42873029	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	89	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2913:TMPRSS2_c.18+14783:ERGdel	yes	unknown	3017525	59680	67766	0	93
P-0042711-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876629	42870659	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):543bp before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-543:TMPRSS2_c.40-59085:ERGdel	yes	unknown	2994030	50424	28522	0	31
P-0044218-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39863913	42871786	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	22	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1670:TMPRSS2_c.18+6374:ERGdel	yes	unknown	3007873	50586	63483	0	25
P-0045237-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865172	42873544	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	0	5	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-3428:TMPRSS2_c.18+5115:ERGdel	yes	unknown	3008372	60055	72919	0	5
P-0061879-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39879951	42874018	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	34	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3902:TMPRSS2_c.40-62407:ERGdel	yes	unknown	2994067	60353	44265	0	33
P-0058564-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39853119	42871142	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	82	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1026:TMPRSS2_c.18+17168:ERGdel	yes	unknown	3018023	38188	46284	0	85
P-0061625-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864927	42871937	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	54	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1821:TMPRSS2_c.18+5360:ERGdel	yes	unknown	3007010	57685	53280	0	56
P-0062080-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39869224	42875577	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	96	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4300:TMPRSS2_c.18+1063:ERGdel	yes	unknown	3006353	86158	63982	0	102
P-0062534-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39914614	42872238	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	24	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2122:TMPRSS2_c.39+32972:ERGdel	yes	unknown	2957624	72972	72222	0	26
P-0042048-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39888009	42873768	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	28	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3652:TMPRSS2_c.39+59577:ERGdel	yes	unknown	2985759	72171	56462	0	34
P-0044656-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868977	42873818	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	79	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3702:TMPRSS2_c.18+1310:ERGdel	yes	unknown	3004841	64815	57129	0	81
P-0063099-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875198	42870306	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):190bp before exon 2		GRCh37	DELETION	10	56	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449): c.56-190:TMPRSS2_c.40-57654:ERGdel	yes	unknown	2995108	34714	49928	0	58
P-0063149-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39869552	42876365	Intron of ERG(-):734bp after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	52	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3512:TMPRSS2_c.18+735:ERGdel	yes	unknown	3006813	100698	43274	0	54
P-0064154-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876198	42872449	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	0	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2333:TMPRSS2_c.40-58654:ERGdel	yes	unknown	2996251	56949	51102	0	7
P-0062737-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39850206	42875106	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4771:TMPRSS2_c.18+20081:ERGdel	yes	unknown	3024900	83911	74825	0	17
P-0064458-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39926092	42876244	Intron of ERG(-):21Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	72	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3633:TMPRSS2_c.39+21494:ERGdel	yes	unknown	2950152	101434	84128	0	75
P-0064547-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831448	42875108	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	208	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4769:TMPRSS2_c.19-13904:ERGdel	yes	unknown	3043660	79044	91014	0	214
P-0065216-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935376	42870322	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):206bp before exon 2		GRCh37	DELETION	0	9	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-206:TMPRSS2_c.39+12210:ERGdel	yes	unknown	2934946	44210	34353	0	10
P-0065246-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39844276	42873470	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	41	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3354:TMPRSS2_c.18+26011:ERGdel	yes	unknown	3029194	77622	11078	0	41
P-0065269-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39806325	42872269	Intron of ERG(-):11Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2153:TMPRSS2_c.237-10842:ERGdel	yes	unknown	3065944	69245	47506	0	7
P-0064546-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39834314	42875978	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	27	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3899:TMPRSS2_c.19-16770:ERGdel	yes	unknown	3041664	83911	45964	0	28
P-0065845-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39854043	42873982	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	28	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3866:TMPRSS2_c.18+16244:ERGdel	yes	unknown	3019939	53711	87218	0	28
P-0066052-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39860896	42875678	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4199:TMPRSS2_c.18+9391:ERGdel	yes	unknown	3014782	92634	68955	0	12
P-0067290-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39906782	42873135	Intron of ERG(-):41Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	46	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3019:TMPRSS2_c.39+40804:ERGdel	yes	unknown	2966353	48592	58479	0	46
P-0061332-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882285	42872834	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2718:TMPRSS2_c.40-64741:ERGdel	yes	unknown	2990549	45408	16668	0	5
P-0067989-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39884552	42871568	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	4	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1452:TMPRSS2_c.39+63034:ERGdel	yes	unknown	2987016	51095	21599	0	3
P-0067541-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39848100	42877906	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	111	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1971:TMPRSS2_c.18+22187:ERGdel	yes	unknown	3029806	64547	89839	0	115
P-0068632-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875840	42875852	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4025:TMPRSS2_c.40-58296:ERGdel	yes	unknown	3000012	49215	54391	0	21
P-0069054-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39867710	42874700	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	12	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4584:TMPRSS2_c.18+2577:ERGdel	yes	unknown	3006990	52928	60119	0	12
P-0069271-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864823	42874617	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	52	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4501:TMPRSS2_c.18+5464:ERGdel	yes	unknown	3009794	58632	45492	0	54
P-0069761-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39942444	42877306	Intron of ERG(-):5Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	13	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2571:TMPRSS2_c.39+5142:ERGdel	yes	unknown	2934862	46529	57616	0	13
P-0069777-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39834640	42873938	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	40	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3822:TMPRSS2_c.19-17096:ERGdel	yes	unknown	3039298	39601	66869	0	40
P-0069846-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39834995	42872385	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	163	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2269:TMPRSS2_c.19-17451:ERGdel	yes	unknown	3037390	60494	44177	0	174
P-0069968-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876117	42860187	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):133bp after exon 5		GRCh37	DELETION	10	35	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.556+134:TMPRSS2_c.40-58573:ERGdel	yes	unknown	2984070	19757	37614	0	39
P-0070312-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39852479	42874867	Intron of ERG(-):18Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	0	25	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4751:TMPRSS2_c.18+17808:ERGdel	yes	unknown	3022388	64161	52432	0	26
P-0070518-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39877446	42875432	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	70	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4445:TMPRSS2_c.40-59902:ERGdel	yes	unknown	2997986	85832	116495	0	72
P-0067529-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39878867	42873987	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	31	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3871:TMPRSS2_c.40-61323:ERGdel	yes	unknown	2995120	80031	43036	0	32
P-0068815-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39885653	42870188	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):72bp before exon 2		GRCh37	DELETION	10	34	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-72:TMPRSS2_c.39+61933:ERGdel	yes	unknown	2984535	38483	29268	0	34
P-0070626-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39886197	42874859	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	36	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4743:TMPRSS2_c.39+61389:ERGdel	yes	unknown	2988662	51943	37959	1	36
P-0070945-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39835151	42872124	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2008:TMPRSS2_c.19-17607:ERGdel	yes	unknown	3036973	47402	75460	0	19
P-0071048-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39926712	42874933	Intron of ERG(-):21Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	64	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4817:TMPRSS2_c.39+20874:ERGdel	yes	unknown	2948221	60367	41127	0	67
P-0071448-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864076	42878532	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	70	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1345:TMPRSS2_c.18+6211:ERGdel	yes	unknown	3014456	77138	119858	0	71
P-0071452-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39824811	42874001	Intron of ERG(-):7Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	4	2	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3885:TMPRSS2_c.19-7267:ERGdel	yes	unknown	3049190	43540	48059	0	2
P-0071497-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39826302	42873198	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	18	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3082:TMPRSS2_c.19-8758:ERGdel	yes	unknown	3046896	32097	33881	0	20
P-0071803-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864183	42874735	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	30	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4619:TMPRSS2_c.18+6104:ERGdel	yes	unknown	3010552	67403	63573	0	31
P-0071888-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39924034	42872661	Intron of ERG(-):24Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	29	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2545:TMPRSS2_c.39+23552:ERGdel	yes	unknown	2948627	53235	42297	0	31
P-0071925-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39879953	42871455	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	9	2	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1339:TMPRSS2_c.40-62409:ERGdel	yes	unknown	2991502	19353	30734	0	2
P-0063999-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876472	42877770	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	65	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2107:TMPRSS2_c.40-58928:ERGdel	yes	unknown	3001298	85006	63628	0	67
P-0067186-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39885934	42877315	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	86	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2562:TMPRSS2_c.39+61652:ERGdel	yes	unknown	2991381	68635	79331	0	91
P-0072029-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39879646	42874373	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	62	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4257:TMPRSS2_c.40-62102:ERGdel	yes	unknown	2994727	56566	61784	0	63
P-0072149-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831468	42872248	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	36	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2132:TMPRSS2_c.19-13924:ERGdel	yes	unknown	3040780	64491	52883	0	37
P-0072233-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39809501	42868233	Intron of ERG(-):8Kb after exon 2	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	97	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1728:TMPRSS2_c.236+7826:ERGdel	yes	unknown	3058732	38408	35340	0	103
P-0072370-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39920883	42877700	Intron of ERG(-):27Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	8	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2177:TMPRSS2_c.39+26703:ERGdel	yes	unknown	2956817	73716	13964	0	11
P-0055211-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39821418	42876010	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	135	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3867:TMPRSS2_c.19-3874:ERGdel	yes	unknown	3054592	51951	98907	0	139
P-0072705-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39858687	42873155	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	7	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3039:TMPRSS2_c.18+11600:ERGdel	yes	unknown	3014468	59766	50326	0	8
P-0072779-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39920388	42870696	Intron of ERG(-):27Kb after exon 3	Intron of TMPRSS2(-):580bp before exon 2		GRCh37	DELETION	10	58	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-580:TMPRSS2_c.39+27198:ERGdel	yes	unknown	2950308	30985	52668	0	60
P-0073134-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882929	42872909	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	95	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2793:TMPRSS2_c.39+64657:ERGdel	yes	unknown	2989980	53997	57906	0	95
P-0073171-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39866546	42876921	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	24	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2956:TMPRSS2_c.18+3741:ERGdel	yes	unknown	3010375	92490	56240	0	25
P-0072675-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39855182	42870816	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):700bp before exon 2		GRCh37	DELETION	10	45	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-700:TMPRSS2_c.18+15105:ERGdel	yes	unknown	3015634	43004	69849	0	47
P-0073374-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39838070	42872866	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	23	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2750:TMPRSS2_c.19-20526:ERGdel	yes	unknown	3034796	68549	34781	0	24
P-0073008-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39843837	42872613	Intron of ERG(-):26Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	39	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2497:TMPRSS2_c.19-26293:ERGdel	yes	unknown	3028776	55973	41936	0	42
P-0074812-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39841728	42874674	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	26	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4558:TMPRSS2_c.19-24184:ERGdel	yes	unknown	3032946	81740	44537	0	27
P-0074150-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875093	42874630	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	67	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4514:TMPRSS2_c.40-57549:ERGdel	yes	unknown	2999537	43781	34098	0	70
P-0075448-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39896578	42875667	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	72	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4210:TMPRSS2_c.39+51008:ERGdel	yes	unknown	2979089	71081	114594	0	74
P-0075419-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39836073	42871753	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	10	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1637:TMPRSS2_c.19-18529:ERGdel	yes	unknown	3035680	62989	43524	0	10
P-0074492-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39878182	42876379	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	50	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3498:TMPRSS2_c.40-60638:ERGdel	yes	unknown	2998197	67355	54509	1	51
P-0075694-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39839081	42875061	Intron of ERG(-):22Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	11	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4816:TMPRSS2_c.19-21537:ERGdel	yes	unknown	3035980	49001	22613	0	12
P-0075912-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39853152	42872678	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	54	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2562:TMPRSS2_c.18+17135:ERGdel	yes	unknown	3019526	51164	84953	0	58
P-0012605-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876843	42875064	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	51	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4813:TMPRSS2_c.40-59299:ERGdel	yes	unknown	2998221	54528	64115	0	55
P-0077088-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831465	42872558	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	76	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2442:TMPRSS2_c.19-13921:ERGdel	yes	unknown	3041093	40106	56409	0	78
P-0077786-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39858964	42873005	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	89	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2889:TMPRSS2_c.18+11323:ERGdel	yes	unknown	3014041	38068	53835	0	90
P-0078618-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39939533	42878429	Intron of ERG(-):8Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION	10	97	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+1448:TMPRSS2_c.39+8053:ERGdel	yes	unknown	2938896	69656	153734	0	98
P-0077280-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39861455	42870197	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):81bp before exon 2		GRCh37	DELETION	10	20	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-81:TMPRSS2_c.18+8832:ERGdel	yes	unknown	3008742	39155	42153	0	21
P-0077973-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39854608	42874277	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	17	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4161:TMPRSS2_c.18+15679:ERGdel	yes	unknown	3019669	57767	18012	0	18
P-0079132-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39874067	42874685	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	0	37	Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4569:TMPRSS2_c.40-56523:ERGdel	yes	unknown	3000618	53925	49905	0	39
P-0077713-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39925426	42874805	Intron of ERG(-):22Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	28	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4689:TMPRSS2_c.39+22160:ERGdel	yes	unknown	2949379	53730	43584	0	29
P-0079299-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39863173	42875716	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	72	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4161:TMPRSS2_c.18+7114:ERGdel	yes	unknown	3012543	56935	84898	0	73
P-0059530-T07-IM7	SOMATIC	TMPRSS2	ERG	21	21	39867894	42871562	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1446:TMPRSS2_c.18+2393:ERGdel			3003668	40549	28523	0	14
P-0074960-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39830577	42875908	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3969:TMPRSS2_c.19-13033:ERGdel			3045331	77692	61279	0	22
P-0078355-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39850722	42871036	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):920bp before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-920:TMPRSS2_c.18+19565:ERGdel			3020314	53426	45372	0	154
P-0037751-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941388	42872642	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG(NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 4 - 10) : c.56-2526:TMPRSS2_c.39+6198:ERG del			2931254	83269	60109	1	163
P-0081404-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39892014	42875878	Intron of ERG(-):56Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3999:TMPRSS2_c.39+55572:ERGdel			2983864	85766	66595	0	45
P-0078854-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39880561	42873758	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3642:TMPRSS2_c.40-63017:ERGdel			2993197	58888	85256	0	37
P-0082376-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39866834	42878230	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1647:TMPRSS2_c.18+3453:ERGdel			3011396	85787	54402	0	20
P-0078621-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39898146	42878063	Intron of ERG(-):49Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+1814:TMPRSS2_c.39+49440:ERGdel			2979917	62194	29533	0	3
P-0020078-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39814317	42872724	Intron of ERG(-):3Kb after exon 2	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-2608:TMPRSS2_c.236+3010:ERGdel			3058407	63289	78400	0	57
P-0023404-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876598	42873536	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-3420:TMPRSS2_c.40-59054:ERGdel			2996938	75311	40678	0	23
P-0023629-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39835019	42872019	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.-56-1903:TMPRSS2_c.19-17475:ERGdel			3037000	57973	41411	0	7
P-0024217-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39928235	42874589	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-4473:TMPRSS2_c.39+19351:ERGdel			2946354	67382	43009	0	10
P-0024249-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39890681	42870724	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):608bp before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion ( TMPRSS2 exon 1 fused to ERG exons 4 -11): c.56-608:TMPRSS2_c.39+56905:ERGdel			2980043	60804	41084	0	105
P-0025139-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39910579	42872490	Intron of ERG(-):37Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.-56-2374:TMPRSS2_c.39+3700:ERGdel			2961911	52733	48078	0	122
P-0025571-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39867317	42872864	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10 ):  c.56-2748:TMPRSS2_c.18+2970:ERGdel			3005547	65171	58042	0	94
P-0026409-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39848311	42878494	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.55+1383:TMPRSS2_c.18+21976:ERGdel			3030183	124747	126590	0	126
P-0027453-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39890597	42872283	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2167:TMPRSS2_c.39+56989:ERGdel			2981686	68499	70733	0	96
P-0030872-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39858126	42872678	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2562:TMPRSS2_c.18+12161:ERGdel			3014552	51346	79428	0	13
P-0032801-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39829912	42870711	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):595bp before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-595:TMPRSS2_c.19-12368:ERGdel			3040799	43262	19667	0	73
P-0033226-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865084	42871204	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exon2) : c.56-1088:TMPRSS2_c.40-47540:ERGdel			3006120	47389	20474	0	47
P-0033300-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39830404	42878752	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 1		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1125:TMPRSS2_c.19-12860:ERGdel			3048348	118274	145024	0	23
P-0034296-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876482	42871419	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1303:TMPRSS2_c.40-58938:ERGdel			2994937	53283	31758	0	7
P-0037022-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887929	42872219	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2103:TMPRSS2_c.39+59657:ERGdel			2984290	61023	82972	0	54
P-0082775-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39886017	42870147	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):31bp before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-31:TMPRSS2_c.39+61569:ERGdel			2984130	65580	38553	0	48
P-0083138-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39830374	42871907	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1791:TMPRSS2_c.19-12830:ERGdel			3041533	42824	48518	0	41
P-0083718-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39861293	42872728	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2612:TMPRSS2_c.18+8994:ERGdel			3011435	61058	66152	0	71
P-0079108-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39829315	42874378	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4262:TMPRSS2_c.19-11771:ERGdel			3045063	60075	62917	0	17
P-0071180-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39868065	42871994	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1878:TMPRSS2_c.18+2222:ERGdel			3003929	54767	24744	0	18
P-0084240-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39855518	42873782	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3666:TMPRSS2_c.18+14769:ERGdel			3018264	54948	53559	0	107
P-0030845-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876623	42870695	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):579bp before exon 2		GRCh37	DELETION			Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10): c.56-579:TMPRSS2_c.40-59079:ERGdel			2994072	44031	47653	0	79
P-0073551-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39873758	42874667	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	35	Protein Fusion: out of frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4551:TMPRSS2_c.40-56214:ERGdel	yes	unknown	3000909	66066	76247	0	35
P-0022557-T01-IM6	SOMATIC	TMPRSS2	FOXP1	21	3	42869050	71060348	Intron of TMPRSS2(-):995bp after exon 2	Intron of FOXP1(-):4Kb after exon 8		GRCh37	TRANSLOCATION	10	61	Protein Fusion: out of frame  {TMPRSS2:FOXP1}	PRECISE	5to3	TMPRSS2 (NM_001135099) - FOXP1 (NM_001244814) rearrangement: t(3;21)(p13;q22.3)(chr3:g.71060348::chr21:g.:42869050)	yes	unknown	0	0	0	0	61
P-0042680-T01-IM6	SOMATIC	TMPRSS2	GCOM1	21	15	42877616	57940741	Intron of TMPRSS2(-):2Kb after exon 1	Intron of GCOM1(+):9Kb after exon 10		GRCh37	TRANSLOCATION	10	48	Protein Fusion: out of frame  {TMPRSS2:GCOM1}	PRECISE	5to5	TMPRSS2 (NM_001135099) - GCOM1 (NM_001018090) rearrangement: t(15;21)(q21.3;q22.3)(chr15:g.57940741::chr21:g.42877616)	yes	unknown	0	0	0	0	58
P-0073410-T01-IM7	SOMATIC	TMPRSS2	GPHN	21	14	42867978	67124512	Intron of TMPRSS2(-):1Kb before exon 3	Intron of GPHN(+):23Kb before exon 2		GRCh37	TRANSLOCATION	10	84	Protein Fusion: out of frame  {TMPRSS2:GPHN}	PRECISE	5to5	TMPRSS2 (NM_001135099) - GPHN (NM_020806) rearrangement: t(14;21)(q23.3;q22.3)(chr14:g.67124512::chr21:g.42867978)	yes	unknown	0	0	0	0	95
P-0030872-T01-IM6	SOMATIC	TMPRSS2	POLDIP3	22	21	43009989	42867864	Intron of POLDIP3(-):815bp after exon 1	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {TMPRSS2:POLDIP3}	PRECISE	3to5	TMPRSS2 (NM_001135099) - POLDIP3 (NM_032311) rearrangement: t(21;22)(q22.3;q13.2)(chr21:g.:42867864::chr22:g.43009989)			0	0	0	0	32
P-0077707-T01-IM7	SOMATIC	TMPRSS2	RUNX1	21	21	36281204	42867090	Intron of RUNX1(-):16Kb before exon 3	Intron of TMPRSS2(-):585bp before exon 3		GRCh37	DELETION	10	39	Protein Fusion: out of frame  {TMPRSS2:RUNX1}	PRECISE	3to5	TMPRSS2 (NM_001135099) - RUNX1 (NM_001754) rearrangement: c.127-585:TMPRSS2_c.59-15944:RUNX1del	yes	unknown	6585886	39002	55062	0	40
P-0020013-T01-IM6	SOMATIC	TMPRSS2	SEPTIN11	21	4	42872227	77953453	Intron of TMPRSS2(-):2Kb before exon 2	Intron of SEPT11(+):1Kb after exon 9		GRCh37	TRANSLOCATION	10	6	Protein Fusion: out of frame  {TMPRSS2:SEPT11}	PRECISE	5to5	TMPRSS2 (NM_001135099) - SEPT11 (NM_018243) rearrangement: t(4;21)(q21.1;q22.3)(chr4:g.77953453::chr21:g.42872227)	yes	unknown	0	0	0	0	10
P-0066629-T01-IM7	SOMATIC	TMPRSS2	ZNF827	21	4	42868560	146791927	Intron of TMPRSS2(-):1Kb after exon 2	Intron of ZNF827(-):297bp before exon 5		GRCh37	TRANSLOCATION	10	60	Protein Fusion: out of frame  {TMPRSS2:ZNF827}	PRECISE	5to3	TMPRSS2 (NM_001135099) - ZNF827 (NM_178835) rearrangement: t(4;21)(q31.21;q22.3)(chr4:g.146791927::chr21:g.42868560)	yes	unknown	0	0	0	0	62
P-0002398-T01-IM3	SOMATIC	TMPRSS2	ARF4	21	3	42867618	57572612	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ARF4(-): 2Kb before exon 2		GRCh37	TRANSLOCATION	13	5	Protein fusion: out of frame (ARF4-TMPRSS2)	PRECISE	3to5	ARF4 (NM_001660) - TMPRSS2 (NM_001135099) Translocation :   t(3;21)(p14.3;q22.3)(chr3:g.57572612::chr21:g.42867618)	yes	unknown	0	0	0	0	0
P-0012695-T01-IM5	SOMATIC	TMPRSS2	DENND3	21	8	42873872	142204112	Intron of TMPRSS2(-): 4Kb before exon 2	Intron of DENND3(+): 20bp before exon 23		GRCh37	TRANSLOCATION	34	40	Protein fusion: out of frame (DENND3-TMPRSS2)	PRECISE	3to3	DENND3 - TMPRSS2 rearrangement: t(8;21)(q24.3;q22.3)(chr8:g.142204112::chr21:g.42873872)	yes	unknown	0	0	0	0	40
P-0002901-T01-IM3	SOMATIC	TMPRSS2	NR3C2	21	4	42869155	149213311	Intron of TMPRSS2(-): 891bp after exon 2	Intron of NR3C2(-): 32Kb before exon 3		GRCh37	TRANSLOCATION	23	25	Protein fusion: out of frame (NR3C2-TMPRSS2)	PRECISE	3to5		yes	unknown	0	0	0	0	0
P-0013729-T01-IM5	SOMATIC	TMPRSS2	CASZ1	21	1	42868002	10703925	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of CASZ1(-): 557bp before exon 19		GRCh37	TRANSLOCATION			Protein fusion: out of frame (TMPRSS2-CASZ1)	IMPRECISE	5to3	TMPRSS2 (NM_001135099) - CASZ1 (NM_001079843) rearrangement: t(1;21)(p36.22;q22.3)(chr1:g.10703925::chr21:g.42868002)			0	0	0	0	18
P-0014629-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914889	42874227	Intron of ERG(-): 33Kb after exon 3	Intron of TMPRSS2(-): 4Kb before exon 2		GRCh37	DELETION	47	81	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused to ERG exon3): c.56-4111:TMPRSS2_c.39+32697:ERGdel	yes	unknown	2959338	91507	56254	0	70
P-0008769-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	39852370	42872367	Intron of ERG(-): 18Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	41	47	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11) : c.56-2251:TMPRSS2_c.40-34826:ERGdel	yes	unknown	3019997	65887	38696	0	43
P-0005596-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39826323	42872344	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	DELETION	72	102	Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10): c.56-2228:TMPRSS2_c.19-8779:ERGdel	yes	unknown	3046021	86704	88870	0	130
P-0004539-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39867904	42876969	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION			Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fuses with ERG exons 2-10): c.55+2908:TMPRSS2_c.40-50360:ERGdel			3009065	97772	100578	0	45
P-0013729-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39868842	42876881	Intron of ERG(-): 1Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1		GRCh37	DELETION			Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+2996:TMPRSS2_c.18+1445:ERGdel			3008039	118017	84075	0	71
P-0014004-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39876954	42876049	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1		GRCh37	DELETION			Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3828_c.40-59410del			2999095	115686	81909	0	244
P-0004345-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39863561	42870767	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 651bp before exon 2		GRCh37	DELETION			Protein fusion: out of frame (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.56-651:TMPRSS2_c.18+6726:ERGdel			3007206	37101	34929	0	9
P-0009640-T01-IM5	SOMATIC	TMPRSS2	ETV1	21	7	42867532	14024122	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 2Kb after exon 1		GRCh37	TRANSLOCATION	0	14	Protein fusion: out of frame (TMPRSS2-ETV1)	IMPRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion (TMPRSS2 exons 1-2 fused with ETV1 exons 2-12): t(7;21)(p21.2;q22.3)(chr7:g.14024122::chr21:g.42867532)	yes	unknown	0	0	0	0	14
P-0002398-T01-IM3	SOMATIC	TMPRSS2	ETV1	21	7	42867877	13988492	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 10Kb before exon 7		GRCh37	TRANSLOCATION	35	25	Protein fusion: out of frame (TMPRSS2-ETV1)	PRECISE	5to3	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) Translocation :   t(21;7)(q22.3;p21.2)(chr21:g.42867877::chr7:g.13988492)	yes	unknown	0	0	0	0	0
P-0012030-T01-IM5	SOMATIC	TMPRSS2	RBPMS2	21	15	42870183	65037007	Intron of TMPRSS2(-): 67bp before exon 2	Intron of RBPMS2(-): 4Kb before exon 7		GRCh37	TRANSLOCATION	0	31	Protein fusion: out of frame (TMPRSS2-RBPMS2)	IMPRECISE	5to3	TMPRSS2 (NM_001135099) - RBPMS2 (NM_194272) rearrangement : t(15;21)(q22.31;q22.3)(chr15:g.65037007::chr21:g.42870183)	yes	unknown	0	0	0	0	31
P-0003001-T01-IM3	SOMATIC	TMPRSS2	SIK1	21	21	42870635	44843452	Intron of TMPRSS2(-): 519bp before exon 2	Intron of SIK1(-): 2Kb before exon 4		GRCh37	DUPLICATION	8	5	Protein fusion: out of frame (TMPRSS2-SIK1)	PRECISE	5to3		yes	unknown	1972817	29300	32724	0	5
P-0015026-T01-IM6	SOMATIC	TMPRSS2	U2AF1	21	21	42871248	44526473	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of U2AF1(-): 1Kb after exon 1		GRCh37	DUPLICATION	50	31	Protein fusion: out of frame (TMPRSS2-U2AF1)	PRECISE	5to3	TMPRSS2 (NM_001135099) - U2AF1 (NM_006758) rearrangement: c.56-1132:TMPRSS2_c.44+1088:U2AF1dup	yes	unknown	1655225	104825	110579	0	29
P-0051214-T01-IM6	SOMATIC	TMPRSS2	BRAF								GRCh37				TMPRSS2-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon2 (NM_005656) and BRAF Exon6 (NM_004333).	yes	unknown					
P-0018524-T01-IM6	SOMATIC	TMPRSS2	BRAF								GRCh37				TMPRSS2-BRAF Fusion - Archer			SAMPLE NEEDS A NOTE about low sample quality and low sequencing coverage. POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_001135099) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0025988-T01-IM6	SOMATIC	TMPRSS2	BRAF								GRCh37				TMPRSS2-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_001135099) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0041041-T02-IM7	SOMATIC	TMPRSS2	DNAH2								GRCh37				TMPRSS2-DNAH2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-DNAH2 fusion. Note: The rearrangement is an out of frame fusion between genes TMPRSS2 Exon5 (NM_005656) and DNAH2 Exon31 (NM_020877). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0010731-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39880628	42872447	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement : c.56-2331:TMPRSS2_c.40-63084:ERGinv			2991819	52966	53653	0	26
P-0016218-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39995997	42868504	3-UTR of ERG(-):38Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 2 with ERG exons 3-11) : c.126+1542:TMPRSS2_c.-150+37585:ERGdel			2872507	25550	38181	0	50
P-0016307-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	40033047	42872621	3-UTR of ERG(-):657bp after coding stop	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 2-11) : c.56-2505:TMPRSS2_c.-150+535:ERGdel			2839574	67896	99873	0	98
P-0016883-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39958056	42871231	3-UTR of ERG(-):76Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG(NM_004449) Rearrangement : c.56-1115:TMPRSS2_c.-149-1187:ERGdel			2913175	48236	49004	0	116
P-0018297-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39993769	42875935	3-UTR of ERG(-):40Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 2-11):c.55+3942:TMPRSS2_c.-149-36900:ERGdel			2882166	71808	138085	0	21
P-0019420-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39966101	42872884	3-UTR of ERG(-):68Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 2-11):c.56-2768:TMPRSS2_c.-149-9232:ERGdel			2906783	76509	76343	0	102
P-0020111-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39943514	42866752	Intron of ERG(-):4Kb after exon 3	Intron of TMPRSS2(-):247bp before exon 3		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement : c.127-247:TMPRSS2_c.39+4072:ERGinv			2923238	24392	26716	0	10
P-0022067-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868149	42872882	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2776:TMPRSS2_c.18+2138:ERGdel			3004733	65597	82599	0	2
P-0022420-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39976055	42871772	3-UTR of ERG(-):58Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1656:TMPRSS2_c.-149-19186:ERGdel			2895717	78190	29132	0	87
P-0023961-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39950968	42868036	3-UTR of ERG(-):83Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 3-11):c.127-1531:TMPRSS2_c.-47-3297:ERGdel			2917068	37880	35394	0	316
P-0024169-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876657	42870901	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):785bp before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement : c.56-785:TMPRSS2_c.40-59113:ERGinv			2994244	40571	32779	0	14
P-0024598-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39821951	42870153	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):37bp before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-37:TMPRSS2_c.19-4407:ERGinv			3048202	52074	35157	0	37
P-0026072-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39986557	42873866	3-UTR of ERG(-):47Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 fused to ERG exons 2-11): c.56-3750:TMPRSS2_c.-149-29688:ERG			2887309	74241	61363	0	149
P-0027245-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868705	42872225	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2109:TMPRSS2_c.18+1582:ERGinv			3003520	58230	78114	0	22
P-0027293-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39894658	42870542	Intron of ERG(-):53Kb after exon 3	Intron of TMPRSS2(-):426bp before exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-426:TMPRSS2_c.39+52928:ERGinv			2975884	41204	52601	0	18
P-0027645-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39950793	42866580	3-UTR of ERG(-):83Kb after coding stop	Intron of TMPRSS2(-):75bp before exon 3		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1-2 fused to ERG exons 3-11):c.127-75:TMPRSS2_c.-47-3122:ERGdel			2915787	18275	20000	0	12
P-0031270-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39964618	42867616	3-UTR of ERG(-):69Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement: c.127-1111:TMPRSS2_c.-149-7749:ERGdel			2902998	33832	18636	0	53
P-0032951-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	40021734	42875759	3-UTR of ERG(-):12Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4118;TMPRSS2_c.-150+11848:ERGdel			2854025	84588	57654	0	98
P-0034298-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39961095	42873083	3-UTR of ERG(-):73Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2967:TMPRSS2_c.-149-4226:ERGdel			2911988	76186	53655	0	53
P-0048510-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39989387	42870264	3-UTR of ERG(-):44Kb after coding stop	Intron of TMPRSS2(-):148bp before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-148:TMPRSS2_c.-149-32518:ERGdel			2880877	28442	25436	0	78
P-0066350-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39969858	42875946	3-UTR of ERG(-):64Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+3931:TMPRSS2_c.-149-12989:ERGdel			2906088	59792	63209	0	67
P-0068638-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	40025725	42874726	3-UTR of ERG(-):8Kb after coding stop	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION			TMPRSS2-ERG Fusion	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG(NM_004449) fusion: c.56-4610:TMPRSS2_c.-150+7857:ERGdel			2849001	47837	59195	0	42
P-0073670-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39962022	42869473	3-UTR of ERG(-):72Kb after coding stop	Intron of TMPRSS2(-):572bp after exon 2		GRCh37	INVERSION			TMPRSS2-ERG Fusion	PRECISE	5to5	TMPRSS2  (NM_001135099) -ERG (NM_004449)rearrangement: c.126+573:TMPRSS2_c.-149-5153ERGinv			2907451	27716	58264	0	77
P-0021025-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0024220-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSIONS IN THE CLINICALLY VALIDATED PANEL: CAST-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes CAST Exon3 (NM_001042440) and BRAF Exon9 (NM_004333). TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449). SLC45A3-ERG fusion. Note: The rearrangement is an in-frame fusion between genes SLC45A3 Exon1 (NM_033102) and ERG Exon4 (NM_004449). The clinical significance of this event is unknown.  TMPRSS2-BRAF fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon2 (NM_001135099) and BRAF Exon10 (NM_004333). The clinical significance of this event is unknown.	yes	unknown					
P-0029843-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449). POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: GRHL2-RSPO2 fusion. Note: The rearrangement is a fusion between genes GRHL2 Exon9 (NM_024915) and RSPO2 Exon2 (NM_178565). https://link.springer.com/content/pdf/10.1007%2Fs11033-014-3409-x.pdf	yes	unknown					
P-0034897-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0042680-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0048498-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon3 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0049439-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0055009-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449). POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:     AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0057179-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449). POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL:    AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982 , 26554309	yes	unknown					
P-0020013-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449).	yes	unknown					
P-0007887-T02-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0020078-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_0056569) and ERG Exon5 (NM_004449).	yes	unknown					
P-0024679-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_182918).	yes	unknown					
P-0036960-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_182918). DIAGNOSTIC INTERPRETATION: POSITIVE FOR THE FOLLOWING ISOFORM IN THE INVESTIGATIONAL PANEL: AR (NM_000044) Variant 7 (AR V-7) PMID: 19117982	yes	unknown					
P-0037022-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449).	yes	unknown					
P-0038349-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0043583-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_001135099) and ERG Exon4 (NM_004449).	yes	unknown					
P-0047795-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0058368-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449). Note2: RNA quality was sub-optimal leading to a low number of unique sequencing reads.	yes	unknown					
P-0019663-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656 and ERG Exon4 (NM_004449). NOte-low read support.	yes	unknown					
P-0040965-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449).	yes	unknown					
P-0046943-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon2 (NM_004449).	yes	unknown					
P-0047937-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0053002-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0061934-T01-IM7	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449). Note2: The overall quality of this sample was sub-optimal.	yes	unknown					
P-0072907-T01-IM7	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon2 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0073020-T01-IM7	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0034876-T01-IM6	SOMATIC	TMPRSS2	ERG								GRCh37				TMPRSS2-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TMPRSS2-ERG fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ERG Exon4 (NM_004449).	yes	unknown					
P-0039657-T01-IM6	SOMATIC	TMPRSS2	ETV4								GRCh37				TMPRSS2-ETV4 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-ETV4 fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon1 (NM_005656) and ETV4 Exon3 (NM_001986).	yes	unknown					
P-0021282-T01-IM6	SOMATIC	TMPRSS2	ETV4								GRCh37				TMPRSS2-ETV4 Fusion - Archer			See Results of M17-20664	yes	unknown					
P-0015026-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42871193	42903820	Intron of TMPRSS2(-): 1Kb before exon 2	IGR: 24Kb after TMPRSS2(-)		GRCh37	DELETION	52	47	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: chr21:g.42903820_c.56-1077del	yes	unknown	32627	89824	93789	0	42
P-0006905-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864886	42871214	Intron of TMPRSS2(-): 1Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	INVERSION	87	102	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement : c.56-1098_349+1397inv	yes	unknown	6328	41434	26554	0	133
P-0002583-T01-IM3	SOMATIC	TMPRSS2	TMPRSS2	21	21	42838033	42875108	3-UTR of TMPRSS2(-): 36bp after coding stop	Intron of TMPRSS2(-): 5Kb after exon 1		GRCh37	INVERSION	23	14	TMPRSS2-intragenic	PRECISE	3to3		yes	unknown	37075	33453	34252	0	13
P-0016548-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42856934	42871774	Intron of TMPRSS2(-):3Kb after exon 5	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	10	95	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.56-1658_c.556+3387inv	yes	unknown	14840	29748	54096	0	95
P-0027600-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857235	42877216	Intron of TMPRSS2(-):3Kb after exon 5	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	INVERSION	10	13	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2: (NM_001135099) rearrangement: c.556+3086_c.55+2661inv	yes	unknown	19981	73138	118902	0	13
P-0038198-T01-IM6	SOMATIC	TMPRSS2	EFCAB14	21	1	42872071	47143557	Intron of TMPRSS2(-):2Kb before exon 2	3-UTR of EFCAB14(-):575bp after coding stop		GRCh37	TRANSLOCATION	10	120	TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(p33;q22.3)(chr1:g.47143557::chr21:g.42872071)	yes	unknown	0	0	0	0	136
P-0034518-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42872555	41636514	Intron of TMPRSS2(-):2Kb before exon 2	IGR: 31Kb before ETV4(-)		GRCh37	TRANSLOCATION	10	200	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41636514::chr21:g.:42872555)	yes	unknown	0	0	0	0	212
P-0041103-T01-IM6	SOMATIC	TMPRSS2	SIPA1L3	21	19	42871994	38571571	Intron of TMPRSS2(-):2Kb before exon 2	5-UTR of SIPA1L3(+):634bp before coding start		GRCh37	TRANSLOCATION	10	21	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.13;q22.3)(chr19:g.38571571::chr21:g.42871994)	yes	unknown	0	0	0	0	22
P-0044414-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39982152	42875260	3-UTR of ERG(-):52Kb after coding stop	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	11	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+4617:TMPRSS2_chr21:g.39982152del	yes	unknown	2893108	72610	35062	0	11
P-0045412-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39987066	42876602	3-UTR of ERG(-):47Kb after coding stop	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	10	60	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+3275:TMPRSS2_chr21:g.39987066del	yes	unknown	2889536	62400	39483	0	164
P-0048980-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42868674	41631175	Intron of TMPRSS2(-):1Kb after exon 2	IGR: 26Kb before ETV4(-)		GRCh37	TRANSLOCATION	10	89	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41631175::chr21:g.42868674)	yes	unknown	0	0	0	0	94
P-0049590-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42433155	42879866	IGR: 80Kb before LINC00323(-)	Intron of TMPRSS2(-):10bp after exon 1		GRCh37	DUPLICATION	10	73	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: c.55+11:TMPRSS2_chr21:g.42433155dup	yes	unknown	446711	118120	233181	0	81
P-0049963-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42854321	42872734	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	INVERSION	10	4	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.56-2618_c.557-1792inv	yes	unknown	18413	39387	18635	0	4
P-0050123-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40094251	42867209	IGR: 17Kb before LINC00114(-)	Intron of TMPRSS2(-):704bp before exon 3		GRCh37	DELETION	10	28	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-704:TMPRSS2_chr21:g.40094251del	yes	unknown	2772958	26779	24223	0	36
P-0051311-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40086924	42871971	IGR: 24Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	59	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-1855:TMPRSS2_chr21:g.40086924del	yes	unknown	2785047	45240	56597	0	61
P-0052688-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40104594	42870382	IGR: 6Kb before LINC00114(-)	Intron of TMPRSS2(-):266bp before exon 2		GRCh37	DELETION	10	55	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-266:TMPRSS2_chr21:g.40104594del	yes	unknown	2765788	59066	36184	0	64
P-0054042-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39973227	42875257	3-UTR of ERG(-):60Kb after coding stop	Intron of TMPRSS2(-):5Kb after exon 1		GRCh37	DELETION	10	46	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+4620:TMPRSS2_chr21:g.39973227del	yes	unknown	2902030	65650	76130	0	47
P-0054218-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40540504	42874210	IGR: 7Kb before PSMG1(-)	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	89	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4094:TMPRSS2_chr21:g.40540504del	yes	unknown	2333706	77600	75291	0	92
P-0054503-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39976221	42871992	3-UTR of ERG(-):57Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	27	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-1876:TMPRSS2_chr21:g.39976221del	yes	unknown	2895771	70352	28176	0	35
P-0055939-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40410380	42872375	IGR: 64Kb before LOC101928435(-)	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION	0	6	TMPRSS2-intragenic	IMPPRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2259:TMPRSS2_chr21:g.40410380inv	yes	unknown	2461995	13884	18561	0	7
P-0057845-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39987775	42873646	3-UTR of ERG(-):46Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	14	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-3530:TMPRSS2_chr21:g.39987775del	yes	unknown	2885871	66428	46476	0	15
P-0060209-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42838823	42839675	Intron of TMPRSS2(-):743bp before exon 14	Exon 13 of TMPRSS2(-)		GRCh37	INVERSION	10	42	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.1564_c.1579-743inv	yes	unknown	852	725	1094	0	42
P-0041957-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39964163	42878060	3-UTR of ERG(-):70Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	32	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+1817:TMPRSS2_chr21:g.39964163del	yes	unknown	2913897	100608	71399	0	32
P-0042971-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40014900	42874211	3-UTR of ERG(-):19Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	86	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4095:TMPRSS2_chr21:g.40014900del	yes	unknown	2859311	71898	55833	0	91
P-0037021-T01-IM6	SOMATIC	TMPRSS2	UMODL1	21	21	42868723	43538595	Intron of TMPRSS2(-):1Kb after exon 2	Intron of UMODL1(+):625bp before exon 15		GRCh37	DELETION	10	30	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+1323:TMPRSS2_chr21:g.43538595del	yes	unknown	669872	74913	75787	0	31
P-0040834-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40357633	42869222	IGR: 11Kb before LOC101928435(-)	Intron of TMPRSS2(-):823bp after exon 2		GRCh37	INVERSION	10	42	TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.126+824:TMPRSS2_chr21:g.40357633inv	yes	unknown	2511589	32165	40870	0	44
P-0060675-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39956960	42869447	3-UTR of ERG(-):77Kb after coding stop	Intron of TMPRSS2(-):598bp after exon 2		GRCh37	INVERSION	6	3	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.126+599:TMPRSS2_chr21:g.39956960inv	yes	unknown	2912487	50229	36104	0	3
P-0061264-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	30297812	42868819	Promoter of LTN1(-):3Kb from tx start	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	INVERSION	0	6	TMPRSS2-intragenic	IMPPRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.126+1227:TMPRSS2_chr21:g.30297812inv	yes	unknown	12571007	109049	167660	0	6
P-0042583-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39962828	42869922	3-UTR of ERG(-):71Kb after coding stop	Intron of TMPRSS2(-):123bp after exon 2		GRCh37	DELETION	10	37	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+124:TMPRSS2_chr21:g.39962828del	yes	unknown	2907094	41065	22977	0	40
P-0037612-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42868077	41635523	Intron of TMPRSS2(-):2Kb before exon 3	IGR: 30Kb before ETV4(-)		GRCh37	TRANSLOCATION	10	24	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: (17;21)(q21.31;q22.3)(chr17:g.41635523::chr21:g.42868077)	yes	unknown	0	0	0	0	33
P-0043671-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40039999	42878373	IGR: 71Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	47	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+1504:TMPRSS2_chr21:g.40039999del	yes	unknown	2838374	105048	61549	0	50
P-0062239-T01-IM7	SOMATIC	TMPRSS2	ANK3	21	10	42842889	62393788	Intron of TMPRSS2(-):219bp before exon 11	Intron of ANK3(-):19Kb before exon 2		GRCh37	TRANSLOCATION	10	11	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: t(10;21)(q21.2;q22.3)(chr10:g.62393788::chr21:g.42842889)	yes	unknown	0	0	0	0	11
P-0062344-T01-IM7	SOMATIC	TMPRSS2	RGS2	21	1	42875473	192773963	Intron of TMPRSS2(-):4Kb after exon 1	IGR: 4Kb before RGS2(+)		GRCh37	TRANSLOCATION	10	16	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q31.2;q22.3)(chr1:g.192773963::chr21:g.42875473)	yes	unknown	0	0	0	0	15
P-0055220-T01-IM7	SOMATIC	TMPRSS2	UMODL1	21	21	42872980	43515020	Intron of TMPRSS2(-):3Kb before exon 2	Intron of UMODL1(+):4Kb before exon 7		GRCh37	DELETION	10	16	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2864:TMPRSS2_chr21:g.43515020del	yes	unknown	642040	44071	24513	0	16
P-0065258-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39965808	42870376	3-UTR of ERG(-):68Kb after coding stop	Intron of TMPRSS2(-):260bp before exon 2		GRCh37	DELETION	10	53	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-260:TMPRSS2_chr21:g.39965808del	yes	unknown	2904568	45207	27536	0	59
P-0065940-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40001528	42873544	3-UTR of ERG(-):32Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	14	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-3428:TMPRSS2_chr21:g.40001528del	yes	unknown	2872016	50385	49916	0	14
P-0066680-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	38926898	42877882	IGR: 70Kb before KCNJ6(-)	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	INVERSION	10	10	TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.55+1995:TMPRSS2_chr21:g.38926898inv	yes	unknown	3950984	94864	167534	0	10
P-0068449-T01-IM7	SOMATIC	TMPRSS2	ZNF415	21	19	42851201	53638525	Exon 7 of TMPRSS2(-)	Promoter of ZNF415(-):27Kb from tx start		GRCh37	TRANSLOCATION	10	30	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.42;q22.3)(chr19:g.53638525::chr21:g.42851201)	yes	unknown	0	0	0	0	34
P-0069051-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40103665	42872430	IGR: 7Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	10	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2314:TMPRSS2_chr21:g.40103665del	yes	unknown	2768765	47912	47032	0	12
P-0069185-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	28005695	42877943	IGR: 167Kb before CYYR1(-)	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	15	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+1934:TMPRSS2_chr21:g.28005695del	yes	unknown	14872248	157107	374278	0	15
P-0069770-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	36628174	42868435	IGR: 117Kb before LOC100506403(-)	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	INVERSION	10	43	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.126+1611:TMPRSS2_chr21:g.36628174inv	yes	unknown	6240261	40695	105138	0	43
P-0071447-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40093485	42875712	IGR: 17Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION	10	41	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+4165:TMPRSS2_chr21:g.40093485del	yes	unknown	2782227	53521	63786	0	43
P-0073859-T01-IM7	SOMATIC	TMPRSS2	ATE1	21	10	42874692	123378617	Intron of TMPRSS2(-):5Kb before exon 2	IGR: 121Kb before ATE1(-)		GRCh37	TRANSLOCATION	10	13	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(10;21)(q26.13;q22.3)(chr10:g.123378617::chr21:g.42874692)	yes	unknown	0	0	0	0	13
P-0075269-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40099585	42870417	IGR: 11Kb before LINC00114(-)	Intron of TMPRSS2(-):301bp before exon 2		GRCh37	DELETION	0	21	TMPRSS2-intragenic	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-301:TMPRSS2_chr21:g.40099585del	yes	unknown	2770832	40469	31139	0	21
P-0073675-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39952613	42870900	3-UTR of ERG(-):81Kb after coding stop	Intron of TMPRSS2(-):784bp before exon 2		GRCh37	DELETION	9	3	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-784:TMPRSS2_chr21:g.39952613del	yes	unknown	2918287	48046	71591	0	3
P-0075501-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39961728	42870106	3-UTR of ERG(-):72Kb after coding stop	Exon 2 of TMPRSS2(-)		GRCh37	DELETION	10	14	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.66:TMPRSS2_chr21:g.39961728del	yes	unknown	2908378	47355	19641	0	15
P-0077755-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39991112	42877868	3-UTR of ERG(-):43Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	14	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+2009:TMPRSS2_chr21:g.39991112del	yes	unknown	2886756	83781	65977	0	16
P-0046029-T03-IM7	SOMATIC	TMPRSS2	LINC00111	21	21	42873641	43025964	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 73Kb before LINC00111(+)		GRCh37	INVERSION	10	13	TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.56-3525:TMPRSS2_chr21:g.43025964inv	yes	unknown	152323	9304	40904	0	12
P-0077216-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	37498199	42868517	3-UTR of LOC100133286(-):739bp after coding stop	Intron of TMPRSS2(-):2Kb after exon 2		GRCh37	DELETION	10	16	TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+1529:TMPRSS2_chr21:g.37498199del	yes	unknown	5370318	54185	60576	0	17
P-0077211-T02-IM7	SOMATIC	TMPRSS2	ETV4	21	17	42869527	41632546	Intron of TMPRSS2(-):518bp after exon 2	IGR: 27Kb before ETV4(-)		GRCh37	TRANSLOCATION	10	10	TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41632546::chr21:g.42869527)	yes	unknown	0	0	0	0	10
P-0074960-T01-IM7	SOMATIC	TMPRSS2	WDR27	21	6	42852439	170095000	Exon 6 of TMPRSS2(-)	5-UTR of WDR27(-):237Kb before coding start		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(q27;q22.3)(chr6:g.170095000::chr21:g.42852439)			0	0	0	0	18
P-0000224-T01-IM3	SOMATIC	TMPRSS2		21	20	42873074	44383097	Intron of TMPRSS2(-): 3Kb before exon 2	IGR: 20Kb before WFDC3(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) Translocation  t(21;20)(q13.12;q22.3)(g.42873074_g.44383097)			0	0	0	0	0
P-0005047-T01-IM5	SOMATIC	TMPRSS2		21	17	42875052	41635162	Intron of TMPRSS2(-): 5Kb after exon 1	IGR: 30Kb before ETV4(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	IMPRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement : t(17;21)(17q21.31;21q22.3)(chr17:g.41635162::chr21:g.42875052)			0	0	0	0	47
P-0005428-T01-IM5	SOMATIC	TMPRSS2		21	3	42874720	186488282	Intron of TMPRSS2(-): 5Kb before exon 2	IGR: 13Kb before EIF4A2(+)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) Rearrangement : t(21;3)(q22.3;q27.3)(chr21:g.42874720::chr3:g.186488282)			0	0	0	0	29
P-0007267-T01-IM5	SOMATIC	TMPRSS2		21	21	40058491	42871324	IGR: 52Kb before NCRNA00114(-)	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement : c.56-1208:TMPRSS2_chr21:g.40058491del			2812833	64506	48862	0	36
P-0007887-T02-IM6	SOMATIC	TMPRSS2		21	21	40087546	42869732	IGR: 23Kb before LINC00114(-)	Intron of TMPRSS2(-):313bp after exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: g.40087546_c.126+314del			2782186	45059	29563	0	19
P-0011525-T01-IM5	SOMATIC	TMPRSS2		21	21	42852553	43616717	Intron of TMPRSS2(-): 24bp before exon 6	IGR: 3Kb before ABCG1(+)		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement :  c.557-24:TMPRSS2_chr21:g.43616717del			764164	121710	121007	0	5
P-0012275-T01-IM5	SOMATIC	TMPRSS2		21	6	42869596	145232571	Intron of TMPRSS2(-): 450bp after exon 2	IGR: 58Kb after UTRN(+)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	IMPRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(q24.2;q22.3)(chr6:g.145232571::chr21:g.42869596)			0	0	0	0	33
P-0014467-T01-IM6	SOMATIC	TMPRSS2		21	21	38949621	42861602	IGR: 47Kb before KCNJ6(-)	Intron of TMPRSS2(-): 82bp before exon 4		GRCh37	DUPLICATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) Rearrangement : c.350-82:TMPRSS2_chr21:g.38949621dup			3911981	63583	77509	0	14
P-0014701-T01-IM6	SOMATIC	TMPRSS2		21	15	42843748	80623299	Exon 10 of TMPRSS2(-)	IGR: 73Kb before ARNT2(+)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	IMPRECISE	5to3	TMPRSS2 (NM_001135099) Rearrangement: t(15,21)(q25.1,q22.3)(chr15:g.15:80623299::chr21:g.42843748)			0	0	0	0	88
P-0015012-T01-IM6	SOMATIC	TMPRSS2		21	8	42877101	96904156	Intron of TMPRSS2(-): 3Kb after exon 1	IGR: 250Kb before GDF6(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099)  rearrangement: t(8;21)(q22.1;q22.3)(chr8:g.96904156::chr21:g.42877101)			0	0	0	0	11
P-0017493-T01-IM6	SOMATIC	TMPRSS2		21	21	34285242	42869534	IGR: 113Kb before OLIG2(+)	Intron of TMPRSS2(-):511bp after exon 2		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.126+512_chr21:g.34285242inv			8584292	60070	118544	0	57
P-0017774-T01-IM6	SOMATIC	TMPRSS2		21	21	40091030	42875842	IGR: 20Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement : chr21:g.40091030_c.55+4035:TMPRSS2del			2784812	77663	68516	0	18
P-0021711-T01-IM6	SOMATIC	TMPRSS2		21	21	40054074	42870684	IGR: 57Kb before LINC00114(-)	Intron of TMPRSS2(-):568bp before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-568_chr21:g.40054074del			2816610	54178	41083	0	9
P-0022437-T01-IM6	SOMATIC	TMPRSS2		21	15	42874076	70805740	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 102Kb before SALRNA3(+)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q23;q22.3)(chr15:g.70805740::chr21:g.42874076)			0	0	0	0	94
P-0024097-T01-IM6	SOMATIC	TMPRSS2		21	19	42872775	52343327	Intron of TMPRSS2(-):3Kb before exon 2	IGR: 16Kb before ZNF577(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.41;q22.3)(chr19:g.52343327::chr21:g.42872775)			0	0	0	0	10
P-0024119-T01-IM6	SOMATIC	TMPRSS2		21	21	39992544	42871213	3-UTR of ERG(-):41Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-1097:TMPRSS2_chr21:g.39992544del			2878669	74733	33223	0	15
P-0024534-T01-IM6	SOMATIC	TMPRSS2		21	21	40083159	42870678	IGR: 28Kb before LINC00114(-)	Intron of TMPRSS2(-):562bp before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-562:TMPRSS2_chr21:g.40083159del			2787519	46351	65099	0	170
P-0024898-T01-IM6	SOMATIC	TMPRSS2		21	1	42873896	205610270	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 17Kb before SLC45A3(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement : t(21;1)(q22.3;q32.1)(chr21:42873896::chr1:205610270)			0	0	0	0	35
P-0025017-T01-IM6	SOMATIC	TMPRSS2		21	13	42879521	63655835	Intron of TMPRSS2(-):355bp after exon 1	IGR: 101Kb before LINC00376(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(13;21)(q21.31;q22.3)(chr13:g.63655835::chr21:g.42879521)			0	0	0	0	8
P-0026123-T01-IM6	SOMATIC	TMPRSS2		21	21	42266771	42843898	IGR: 247Kb before LINC00323(-)	Exon 10 of TMPRSS2(-)		GRCh37	INVERSION			TMPRSS2-intragenic	IMPPRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: chr21:g.42266771_c.1021inv			577127	4039	7548	0	30
P-0027453-T01-IM6	SOMATIC	TMPRSS2		21	18	42860348	62539742	Exon 5 of TMPRSS2(-)	IGR: 659Kb before LINC01538(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(18;21)(q22.1;q22.3)(chr18:g.62539742::chr21:g.42860348)			0	0	0	0	62
P-0027454-T01-IM6	SOMATIC	TMPRSS2		21	14	42869346	23791333	Intron of TMPRSS2(-):699bp after exon 2	Intron of PABPN1(+):56bp before exon 2		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: t(14;21)(q11.2;q22.3)(chr14:g.23791333::chr21:g.42869346)			0	0	0	0	7
P-0027823-T01-IM6	SOMATIC	TMPRSS2		21	21	40053392	42869556	IGR: 57Kb before LINC00114(-)	Intron of TMPRSS2(-):489bp after exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+490:TMPRSS2_chr21:g.40053392del			2816164	35900	47376	0	79
P-0029183-T01-IM6	SOMATIC	TMPRSS2		21	21	40098936	42875841	IGR: 12Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb after exon 1		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+4036:TMPRSS2_chr21:g.40098936del			2776905	87271	100092	0	67
P-0029216-T01-IM6	SOMATIC	TMPRSS2		21	21	40100480	42871755	IGR: 10Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement: c.56-1639:TMPRSS2_chr21:g.40100480del			2771275	52341	70153	0	4
P-0030792-T01-IM6	SOMATIC	TMPRSS2		21	21	40102198	42867718	IGR: 9Kb before LINC00114(-)	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement: c.127-1213:TMPRSS2_chr21:g.40102198del			2765520	22710	32494	0	43
P-0032478-T01-IM6	SOMATIC	TMPRSS2		21	10	42861302	45577774	Intron of TMPRSS2(-):131bp after exon 4	IGR: 17Kb before RSU1P2(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) Rearrangement : t(10;21)(q11.21;q22.2)(chr10:g.45577774::chr21:g.42861302)			0	0	0	0	15
P-0033126-T01-IM6	SOMATIC	TMPRSS2		21	21	40082965	42874530	IGR: 28Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement : c.56-4414:TMPRSS2_chr21:g.40082965del			2791565	64976	94059	0	54
P-0035270-T01-IM6	SOMATIC	TMPRSS2		21	21	39975032	42869918	3-UTR of ERG(-):59Kb after coding stop	Intron of TMPRSS2(-):127bp after exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2:NM_001135099 - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 2-11):			2894886	31248	31723	0	74
P-0036349-T01-IM6	SOMATIC	TMPRSS2		21	21	40097824	42871487	IGR: 13Kb before LINC00114(-)	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement : c.56-1371:TMPRSS2_chr21:g.40097824del			2773663	50816	31876	0	142
P-0036573-T01-IM6	SOMATIC	TMPRSS2		21	21	40068238	42870653	IGR: 43Kb before LINC00114(-)	Intron of TMPRSS2(-):537bp before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) Rearrangement : c.56-537_chr21:g.40068238del			2802415	44258	54112	0	45
P-0038349-T01-IM6	SOMATIC	TMPRSS2		21	21	33128749	42874772	IGR: 85Kb before SCAF4(-)	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: chr21:g.33128749_c.56-4656inv			9746023	127610	44099	0	7
P-0039657-T01-IM6	SOMATIC	TMPRSS2		21	17	42871753	41632313	Intron of TMPRSS2(-):2Kb before exon 2	IGR: 27Kb before ETV4(-)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41632313::chr21:g.42871753)			0	0	0	0	79
P-0040965-T01-IM6	SOMATIC	TMPRSS2		21	21	39968609	42874875	3-UTR of ERG(-):65Kb after coding stop	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4759:TMPRSS2_chr21:g.39968609del			2906266	80207	61578	0	66
P-0046943-T01-IM6	SOMATIC	TMPRSS2		21	21	40030286	42879400	3-UTR of ERG(-):3Kb after coding stop	Intron of TMPRSS2(-):476bp after exon 1		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.55+477:TMPRSS2_chr21:g.40030286del			2849114	72918	65010	0	55
P-0058368-T01-IM6	SOMATIC	TMPRSS2		21	21	18739845	42873170	IGR: 71Kb before LINC01549(+)	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DUPLICATION			TMPRSS2-intragenic	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: c.56-3054:TMPRSS2_chr21:g.18739845dup			24133325	105846	86739	0	4
P-0073020-T01-IM7	SOMATIC	TMPRSS2		21	21	41798882	42872407	Intron of DSCAM(-):58Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.56-2291:TMPRSS2_chr21:g.41798882inv			1073525	37738	73097	0	50
P-0073670-T01-IM7	SOMATIC	TMPRSS2		21	21	42839246	42869513	Intron of TMPRSS2(-):414bp after exon 13	Intron of TMPRSS2(-):532bp after exon 2		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.126+533_c.1578+415inv			30267	18508	40611	0	15
P-0081917-T01-IM7	SOMATIC	TMPRSS2		21	16	42869335	12977757	Intron of TMPRSS2(-):710bp after exon 2	IGR: 18Kb before SHISA9(+)		GRCh37	TRANSLOCATION			TMPRSS2-intragenic	IMPPRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(16;21)(p13.12;q22.3)(chr16:g.12977757::chr21:g.42869335)			0	0	0	0	33
P-0082790-T01-IM7	SOMATIC	TMPRSS2		21	21	42876761	45406354	Intron of TMPRSS2(-):3Kb after exon 1	3-UTR of AGPAT3(+):27Kb after coding stop		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: c.55+3116:TMPRSS2_chr21:g.45406354inv			2529593	31985	69169	0	90
P-0085841-T01-IM7	SOMATIC	TMPRSS2		21	21	40035901	42877208	Promoter of ERG(-):284Kb from tx start	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	INVERSION			TMPRSS2-intragenic	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.55+2669:TMPRSS2_chr21:g.40035901inv			2841307	87174	54592	0	56
P-0085630-T01-IM7	SOMATIC	TMPRSS2		21	21	39985230	42867901	3-UTR of ERG(-):48Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 3		GRCh37	DELETION			TMPRSS2-intragenic	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-1396:TMPRSS2_chr21:g.39985230del			2882671	33703	15177	0	20
P-0023626-T01-IM6	SOMATIC	TMPRSS2	JAZF1								GRCh37				TMPRSS2-JAZF1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-JAZF1 fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon1 (NM_005656) and JAZF1 Exon3 (NM_175061). The functional significance of this fusion is unknown.	yes	unknown					
P-0016386-T01-IM6	SOMATIC	TMPRSS2	KMT2C	21	7	42872510	151900703	Intron of TMPRSS2(-):2Kb before exon 2	Intron of KMT2C(-):554bp before exon 26		GRCh37	TRANSLOCATION			TMPRSS2-KMT2C Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099) - KMT2C (NM_170606) rearrangement: t(7;21)(q36.1;q22.3)(chr7:g.151900703::chr21:g.42872453)			0	0	0	0	65
P-0055491-T01-IM6	SOMATIC	TMPRSS2	RCAN3								GRCh37				TMPRSS2-RCAN3 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-RCAN3 fusion. Note: The rearrangement is a fusion between genes TMPRSS2 Exon5 (NM_005656) and RCAN3 Exon1 (5'UTR, NM_013441). Note2: The functional significance of this event is unknown.	yes	unknown					
P-0022189-T01-IM6	SOMATIC	TMPRSS2	SKIL								GRCh37				TMPRSS2-SKIL Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TMPRSS2-SKIL fusion. Note: The rearrangement is an in-frame fusion between genes TMPRSS2 Exon2 (NM_001135099) and SKIL Exon1 (NM_001248008).							
P-0004539-T01-IM5	SOMATIC	TMPRSS2	ZNF295	21	21	42876881	43407557	Intron of TMPRSS2(-): 3Kb after exon 1	3-UTR of ZNF295(-): 3Kb after coding stop		GRCh37	INVERSION			TMPRSS2-ZNF295 Fusion	PRECISE	3to3	TMPRSS2 (NM_001135099)  - ZNF295 (NM_020727) rearrangement (530676 bp) : c.55+2996_c.*3447:ZNF295inv			530676	19155	20809	0	13
P-0012630-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39951997	42871597	5-UTR of ERG(-): 4Kb before coding start	Intron of TMPRSS2(-): 1Kb before exon 2		GRCh37	DELETION			Transcript fusion (TMPRSS2-ERG)	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 3-11) : c.56-1481:TMPRSS2_c.-47-4326:ERG_del			2919600	50997	52877	0	6
P-0011198-T01-IM5	SOMATIC	TMPRSS2	ETV5	21	3	42867761	185827438	Intron of TMPRSS2(-): 1Kb before exon 3	Promoter of ETV5(-): 537bp from tx start		GRCh37	TRANSLOCATION	0	13	Transcript fusion (TMPRSS2-ETV5)	IMPRECISE	5to3	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) rearrangement : t(3;21)(q27.2;q22.3)(chr3:g.185827438::chr21:g.42867761)	yes	unknown	0	0	0	0	13
P-0049438-T01-IM6	SOMATIC	TMPRSS2	ETV5	21	3	42861570	185825058	Intron of TMPRSS2(-):50bp before exon 4	5-UTR of ETV5(-):59Kb before coding start		GRCh37	TRANSLOCATION	10	11	Transcript Fusion {ETV5:TMPRSS2}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: t(3;21)(q27.2;q22.3)(chr3:g.185825058::chr21:g.42861570)	yes	unknown	0	0	0	0	11
P-0016877-T01-IM6	SOMATIC	TMPRSS2	NSUN4	21	1	42866769	46831834	Intron of TMPRSS2(-):264bp before exon 3	Promoter of NSUN4(+):26Kb from tx start		GRCh37	TRANSLOCATION	10	14	Transcript Fusion {NSUN4:TMPRSS2}	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(p33;q22.3)(chr1:g.46831834::chr21:g.42866769)	yes	unknown	0	0	0	0	13
P-0049520-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40822873	42874915	5-UTR of SH3BGR(+):12Kb before coding start	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	INVERSION	9	11	Transcript Fusion {SH3BGR:TMPRSS2}	PRECISE	3to3	TMPRSS2 (NM_001135099) rearrangement: c.56-4799:TMPRSS2_chr21:g.40822873inv	yes	unknown	2052042	57942	86183	0	11
P-0068097-T01-IM7	SOMATIC	TMPRSS2	SLX4	21	16	42878895	3664384	Intron of TMPRSS2(-):981bp after exon 1	Promoter of SLX4(-):33Kb from tx start		GRCh37	TRANSLOCATION	10	14	Transcript Fusion {SLX4:TMPRSS2}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: t(16;21)(p13.3;q22.3)(chr16:g.3664384::chr21:g.42878895)	yes	unknown	0	0	0	0	15
P-0016386-T01-IM6	SOMATIC	TMPRSS2		21	7	42872453	2452854	Intron of TMPRSS2(-):2Kb before exon 2	5-UTR of CHST12(+):19Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {TMPRSS2:CHST12}	PRECISE	5to5	TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p22.3;q22.3)(chr7:g.2452854::chr21:g.42872453)			0	0	0	0	46
P-0040519-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872356	42871163	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	0	6	Transcript Fusion {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1047:TMPRSS2_c.40-54812:ERGdel	yes	unknown	2998807	13067	47005	0	6
P-0040754-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872498	42870317	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):201bp before exon 2		GRCh37	DELETION	10	114	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-201:TMPRSS2_c.40-54954:ERGdel	yes	unknown	2997819	49737	52074	0	116
P-0044245-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871301	42874614	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	83	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4498:TMPRSS2_c.40-53757:ERGdel	yes	unknown	3003313	36886	58690	0	86
P-0046463-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871198	42874938	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	90	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4822:TMPRSS2_c.40-53654:ERGdel	yes	unknown	3003740	64501	51270	0	94
P-0046798-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871048	42877051	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb after exon 1		GRCh37	DELETION	0	5	Transcript Fusion {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2826:TMPRSS2_c.40-53504:ERGdel	yes	unknown	3006003	81488	41438	0	5
P-0024459-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873052	42869581	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):464bp after exon 2		GRCh37	DELETION	10	87	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+465:TMPRSS2_c.40-55508:ERGdel	yes	unknown	2996529	39358	36611	0	109
P-0054521-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872057	42873849	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	53	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3733:TMPRSS2_c.40-54513:ERGdel	yes	unknown	3001792	61933	72467	0	55
P-0048103-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872429	42873703	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	48	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449): c.56-3587:TMPRSS2_c.40-54885:ERGdel	yes	unknown	3001274	61870	49200	0	51
P-0057760-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872881	42871840	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	100	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449 rearrangement: c.56-1724:TMPRSS2_chr21:c.40-55337del	yes	unknown	2998959	68036	55810	0	102
P-0037691-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871604	42871198	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	0	90	Transcript Fusion {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon1): c.56-1082:TMPRSS2_c.-1300:ERGdel	yes	unknown	2999594	47685	34283	0	93
P-0042830-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871188	42873124	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	23	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3008:TMPRSS2_c.40-53644:ERGdel	yes	unknown	3001936	68269	14157	0	26
P-0062518-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39870672	42872973	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	65	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2857:TMPRSS2_c.40-53128:ERGdel	yes	unknown	3002301	66771	86569	0	70
P-0067735-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39872791	42868218	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 3		GRCh37	DELETION	10	10	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1713:TMPRSS2_c.40-55247:ERGdel	yes	unknown	2995427	23845	15065	0	11
P-0070297-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39873427	42871170	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2		GRCh37	DELETION	10	18	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2857:TMPRSS2_c.40-53128:ERGdel	yes	unknown	2997743	38491	61034	0	18
P-0077825-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39871242	42870925	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):809bp before exon 2		GRCh37	DELETION	10	103	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-809:TMPRSS2_c.40-53698:ERGdel	yes	unknown	2999683	37561	40748	0	104
P-0063543-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39870833	42867228	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):723bp before exon 3		GRCh37	DELETION	10	24	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11): c.127-723:TMPRSS2_c.40-53289:ERGdel	yes	unknown	2996395	30672	62030	0	25
P-0079100-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39872076	42878179	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):2Kb after exon 1		GRCh37	DELETION	10	20	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion: c.55+1698:TMPRSS2_c.40-54532:ERGdel	yes	unknown	3006103	99260	29718	0	20
P-0024679-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872360	42874863	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION			Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) -  ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exon 4-11 ) : c.56-4747:TMPRSS2_c.40-54816:ERGdel			3002503	72131	66064	0	35
P-0060504-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872608	42872552	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2		GRCh37	DELETION	10	48	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2436:TMPRSS2_chr21:g.39872608del	yes	unknown	2999944	103707	63226	0	49
P-0060673-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39870977	42874673	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2		GRCh37	DELETION	10	13	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4557:TMPRSS2_chr21:g.39870977del	yes	unknown	3003696	83757	30877	0	13
P-0061562-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872497	42867077	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):572bp before exon 3		GRCh37	DELETION	10	19	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-572:TMPRSS2_chr21:g.39872497del	yes	unknown	2994580	32128	17287	0	19
P-0065904-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39871527	42867117	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):612bp before exon 3		GRCh37	DELETION	10	24	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.127-612:TMPRSS2_chr21:g.39871527del	yes	unknown	2995590	26770	35237	0	24
P-0071763-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39871077	42869118	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):927bp after exon 2		GRCh37	DELETION	10	24	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+928:TMPRSS2_chr21:g.39871077del	yes	unknown	2998041	28261	27468	0	28
P-0075595-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872474	42873099	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	0	15	Transcript Fusion {TMPRSS2:ERG}	IMPPRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-2983:TMPRSS2_chr21:g.39872474del	yes	unknown	3000625	75939	64112	0	16
P-0076010-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39870983	42869026	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):1Kb after exon 2		GRCh37	DELETION	8	10	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.126+1020:TMPRSS2_chr21:g.39870983del	yes	unknown	2998043	27943	32540	0	10
P-0076320-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39871554	42874456	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2		GRCh37	DELETION	10	56	Transcript Fusion {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-4340:TMPRSS2_chr21:g.39871554del	yes	unknown	3002902	40275	24918	0	57
P-0075182-T01-IM7	SOMATIC	TMPRSS2	ETV1	21	7	42869829	14031012	Intron of TMPRSS2(-):216bp after exon 2	Promoter of ETV1(-):100Kb from tx start		GRCh37	TRANSLOCATION	10	58	Transcript Fusion {TMPRSS2:ETV1}	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p21.2;q22.3)(chr7:g.14031012::chr21:g.42869829)	yes	unknown	0	0	0	0	58
P-0066691-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40108692	42873224	Promoter of LINC00114(-):2Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2		GRCh37	DELETION	10	15	Transcript Fusion {TMPRSS2:LINC00114}	PRECISE	3to5	TMPRSS2 (NM_001135099) rearrangement: c.56-3108:TMPRSS2_chr21:g.40108692del	yes	unknown	2764532	57231	64504	0	19
P-0068968-T01-IM7	SOMATIC	TMPRSS2	NCOA2	21	8	42876025	71148799	Intron of TMPRSS2(-):4Kb after exon 1	5-UTR of NCOA2(-):123Kb before coding start		GRCh37	TRANSLOCATION	10	82	Transcript Fusion {TMPRSS2:NCOA2}	PRECISE	5to3	TMPRSS2 (NM_001135099) rearrangement: t(8;21)(q13.3;q22.3)(chr8:g.71148799::chr21:g.42876025)	yes	unknown	0	0	0	0	82
P-0048761-T01-IM6	SOMATIC	TMPRSS2	ETV5	21	3	42873899	185800235	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ETV5(-):1Kb before exon 6		GRCh37	TRANSLOCATION	10	11	Protein Fusion: in frame  {TMPRSS2:ETV5}	PRECISE	5to3	TMPRSS2 exon 1 to ETV5 exon 6	yes	unknown	0	0	0	0	12
P-0048597-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39882599	42869694	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):351bp after exon 2		GRCh37	DELETION	10	28	Protein Fusion: in frame  {TMPRSS2:ERG}	PRECISE	3to5	TMPRSS2 exon 2 with ERG exon 4	yes	unknown	2987095	44460	32008	0	28
P-0024889-T01-IM6	SOMATIC	TMTC2	TEK	12	9	83239788	27168693	Intron of TMTC2(+):11Kb before exon 2	Intron of TEK(+):90bp after exon 3		GRCh37	TRANSLOCATION	10	6	Protein Fusion: out of frame  {TEK:TMTC2}	PRECISE	5to3	TEK (NM_000459) - TMTC2 (NM_152588) rearrangement: t(9;12)(p21.2;q21.31)(chr9:g.27168693::chr12:g.83239788)	yes	unknown	0	0	0	0	7
P-0002178-T01-IM3	SOMATIC	TNFAIP3	TNFAIP3	6	6	138195467	138196055	Intron of TNFAIP3(+): 515bp before exon 3	Exon 3 of TNFAIP3(+)		GRCh37	DELETION	59	39	Deletion within transcript: mid-exon	PRECISE	3to5		yes	unknown	588	978	1059	0	43
P-0052802-T01-IM6	SOMATIC	TNFAIP3	TNFAIP3	6	6	135837820	138192499	5-UTR of LINC00271(+):174Kb before coding start	Exon 2 of TNFAIP3(+)		GRCh37	INVERSION	10	19	TNFAIP3-intragenic	PRECISE	5to5	TNFAIP3 (NM_006290) rearrangement: c.135:TNFAIP3_chr6:g.135837820inv	yes	unknown	2354679	20212	19706	0	21
P-0030439-T01-IM6	SOMATIC	TNFAIP3		6	2	138199514	39456472	Intron of TNFAIP3(+):54bp before exon 7	Intron of CDKL4(-):33bp after exon 1		GRCh37	TRANSLOCATION			TNFAIP3-intragenic	PRECISE	5to3	TNFAIP3 (NM_006290) rearrangement: t(2;6)(p22.1;q23.3)(chr2:g.39456472::chr6:g.138199514)			0	0	0	0	19
P-0067380-T01-IM7	SOMATIC	TNFRSF10B	MET								GRCh37				TNFRSF10B-MET Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TNFRSF10B-MET fusion. Note: The rearrangement is an in-frame fusion between genes TNFRSF10B Exon1 (NM_003842) and MET Exon13 (NM_000245). https://ascopubs.org/doi/full/10.1200/PO.20.00265	yes	unknown					
P-0028405-T01-IM6	SOMATIC	TNFRSF14	CNKSR1	1	1	2493316	26512742	Intron of TNFRSF14(+):62bp after exon 6	Intron of CNKSR1(+):916bp before exon 15		GRCh37	INVERSION	10	20	Antisense Fusion	PRECISE	3to3	TNFRSF14 (NM_003820) rearrangement: c.694+62_chr1:g.26512742inv	yes	unknown	24019426	242745	250684	0	18
P-0076654-T01-IM7	SOMATIC	TNFRSF14	TNFRSF14	1	1	2492285	2494376	Intron of TNFRSF14(+):132bp after exon 5	Intron of TNFRSF14(+):41bp after exon 7		GRCh37	DELETION	10	88	Deletion of 2 exons : out of frame	PRECISE	3to5	TNFRSF14 (NM_003820) rearrangement: c.551+132_c.726+41del	yes	unknown	2091	1809	1780	0	89
P-0037914-T01-IM6	SOMATIC	TNFRSF14	PLXNA2	1	1	2489056	208364734	Intron of TNFRSF14(+):108bp before exon 2	Intron of PLXNA2(-):19Kb after exon 3		GRCh37	INVERSION	5	3	Protein Fusion: in frame  {TNFRSF14:PLXNA2}	PRECISE	3to3	TNFRSF14 (NM_003820) - PLXNA2 (NM_025179) rearrangement: c.70-109:TNFRSF14_c.1371+18891:PLXNA2inv	yes	unknown	205875678	1144773	1193281	0	3
P-0015531-T01-IM6	SOMATIC	TNFRSF14	PLCH2	1	1	2430635	2488204	Exon 19 of PLCH2(+)	Intron of TNFRSF14(+): 32bp after exon 1		GRCh37	DUPLICATION			Protein fusion: mid-exon (TNFRSF14-PLCH2)	PRECISE	5to3	TNFRSF14 (NM_003820) - PLCH2 (NM_014638)  rearrangement: c.2547:PLCH2_c.69+32:TNFRSF14dup			57569	1943	1760	0	72
P-0053618-T02-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2479968	2491388	Promoter of LOC115110(-):1Kb from tx start	Exon 4 of TNFRSF14(+)		GRCh37	DELETION	7	5	TNFRSF14-intragenic	PRECISE	3to5	TNFRSF14 (NM_003820) rearrangement: c.431:TNFRSF14_chr1:g.2479968del	yes	unknown	11420	3449	8716	0	5
P-0015825-T01-IM6	SOMATIC	TNFRSF14	RC3H1	1	1	2494624	173990228	Exon 8 of TNFRSF14(+)	IGR: 90Kb before RC3H1(-)		GRCh37	INVERSION	10	7	TNFRSF14-intragenic	PRECISE	3to3	TNFRSF14 (NM_003820) rearrangement: c.764_chr1:g.173990228inv	yes	unknown	171495604	839694	1910321	0	8
P-0014004-T01-IM5	SOMATIC	TNFRSF14		19	1	54979682	2494783	5-UTR of CDC42EP5(-): 3Kb before coding start	3-UTR of TNFRSF14(+): 71bp after coding stop		GRCh37	TRANSLOCATION			TNFRSF14-intragenic	IMPRECISE	5to3	TNFRSF14 (NM_003820) rearrangement: t(1;19)(p36.32; q13.42)(chr1:g.2494783::chr19:g.54979682)			0	0	0	0	99
P-0035965-T01-IM6	SOMATIC	TNFRSF14		1	1	2493299	53064323	Intron of TNFRSF14(+):45bp after exon 6	IGR: 4Kb before GPX7(+)		GRCh37	INVERSION			TNFRSF14-intragenic	PRECISE	3to3	TNFRSF14 (NM_003820) rearrangement: c.694+45:TNFRSF14_chr1:g.53064323inv			50571024	565103	428773	0	33
P-0010075-T01-IM5	SOMATIC	TNFRSF19	RB1	13	13	24150799	48916680	5-UTR of TNFRSF19(+): 14Kb before coding start	Intron of RB1(+): 55bp before exon 3		GRCh37	DELETION	10	8	Transcript fusion (TNFRSF19-RB1)	PRECISE	3to5	RB1 (NM_000321) Rearrangement : chr13:g.24150799_c.265-55:RB1del	yes	unknown	24765881	232838	226270	0	8
P-0041466-T01-IM6	SOMATIC	TNK1	ERG	21	17	39795493	7286632	Intron of ERG(-):10bp before exon 3	Exon 3 of TNK1(+)		GRCh37	TRANSLOCATION	10	9	Protein Fusion: mid-exon  {TNK1:ERG}	PRECISE	3to3	TNK1 (NM_001251902) - ERG (NM_182918) rearrangement: t(17;21)(p13.1;q22.2)(chr17:g.7286632::chr21:g.39795493)	yes	unknown	0	0	0	0	9
P-0024800-T01-IM6	SOMATIC	TNKS	NRG1								GRCh37				TNKS-NRG1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TNKS-NRG1 fusion. Note: The rearrangement is an in-frame fusion between genes TNKS Exon3 (NM_003747) and NRG1 Exon 2 (NM_004495).	yes	unknown					
P-0003722-T01-IM5	SOMATIC	TNS3	EGFR	7	7	46674498	55259561	IGR: 640Kb before TNS3(-)	Exon 21 of EGFR(+)		GRCh37	INVERSION			TNS3-EGFR Fusion	PRECISE	3to3	TNS3 (NM_022748) - EGFR (NM_005228) inversion (8585063bp) : g.46674498:TNS3_c.2619:EGFRinv			8585063	74660	122282	0	43
P-0044733-T01-IM7	SOMATIC	TOB1	NOTCH2								GRCh37				TOB1-NOTCH2 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TOB1-NOTCH2 fusion. Note: The rearrangement is a fusion between genes TOB1 Exon1 (NM_005749) and NOTCH2 Exon26 (NM_024408). PMID: 22101766	yes	unknown					
P-0006074-T01-IM5	SOMATIC	TOP1	SLC13A3	20	20	39745023	45193574	Exon 17 of TOP1(+)	Intron of SLC13A3(-): 1Kb after exon 11		GRCh37	DELETION	81	40	Antisense fusion	PRECISE	3to5	TOP1 (NM_003286) - SLC13A3 (NM_022829) rearrangement event : c.1813:TOP1_c.1494+1294: SLC13A3del	yes	unknown	5448551	69661	53438	0	37
P-0054459-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39672461	39742754	Intron of TOP1(+):14Kb after exon 2	Exon 15 of TOP1(+)		GRCh37	INVERSION	10	70	Antisense Fusion	PRECISE	3to3	TOP1 (NM_003286) rearrangement: c.58+14366_c.1597inv	yes	unknown	70293	11338	17069	0	70
P-0063379-T01-IM7	SOMATIC	TOP1	MYBL2	20	20	39657740	42315445	Exon 1 of TOP1(+)	Intron of MYBL2(+):46bp before exon 5		GRCh37	INVERSION	10	55	Antisense Fusion	PRECISE	3to3	TOP1 (NM_003286) rearrangement: c.33:TOP1_chr20:g.42315445inv	yes	unknown	2657705	90881	147668	0	55
P-0065142-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39708883	39713566	Intron of TOP1(+):63bp after exon 6	Intron of TOP1(+):358bp after exon 8		GRCh37	DELETION	10	8	Deletion of 2 exons : in frame	PRECISE	3to5	TOP1 (NM_003286) rearrangement: c.431+63_c.614+358del	yes	unknown	4683	2025	3388	0	8
P-0048373-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39728672	39750690	Intron of TOP1(+):23bp before exon 12	Exon 20 of TOP1(+)		GRCh37	DELETION	9	5	Deletion within transcript : mid-exon	PRECISE	3to5	TOP1 (NM_003286) rearrangement: c.976-24_c.2090del	yes	unknown	22018	7520	10553	0	6
P-0014509-T01-IM6	SOMATIC	TOP1		20	20	39734194	39744951	Intron of TOP1(+): 4Kb after exon 13	Exon 17 of TOP1(+)		GRCh37	DUPLICATION			Duplication within transcript: mid-exon	PRECISE	5to3	TOP1 (NM_003286) rearrangement: c.1308+4201_c.1741dup			10757	4776	6546	0	14
P-0029559-T01-IM6	SOMATIC	TOP1	PTPRG	20	3	39708821	61957689	Intron of TOP1(+):1bp after exon 6	Intron of PTPRG(+):18Kb before exon 3		GRCh37	TRANSLOCATION	10	54	Protein Fusion: out of frame  {TOP1:PTPRG}	PRECISE	3to5	TOP1 (NM_003286) - PTPRG (NM_002841) rearrangement: t(3;20)(p14.2;q12)(chr3:g.61957689::chr20:g.39708821)	yes	unknown	0	0	0	0	54
P-0039859-T01-IM6	SOMATIC	TOP1	TOP1	20	20	37815818	39750460	IGR: 27Kb before LOC339568(-)	Intron of TOP1(+):30bp after exon 19		GRCh37	INVERSION	8	2	TOP1-intragenic	PRECISE	3to3	TOP1 (NM_003286) rearrangement: c.2045+30:TOP1_chr20:g.37815818inv	yes	unknown	1934642	21771	19385	0	2
P-0042958-T01-IM6	SOMATIC	TOP1	LNX2	20	13	39658076	28121662	Exon 2 of TOP1(+)	3-UTR of LNX2(-):809bp after coding stop		GRCh37	TRANSLOCATION	10	26	TOP1-intragenic	PRECISE	3to3	TOP1 (NM_003286) rearrangement: t(13;20)(q12.2;q12)(chr13:g.28121662::chr20:g.39658076)	yes	unknown	0	0	0	0	25
P-0051960-T03-IM7	SOMATIC	TOP1	PTPRT	20	20	39726743	40649293	Intron of TOP1(+):111bp before exon 11	IGR: 52Kb before PTPRT(-)		GRCh37	INVERSION	7	7	TOP1-intragenic	PRECISE	5to5	TOP1 (NM_003286) rearrangement: c.853-112:TOP1_chr20:g.40649293inv	yes	unknown	922550	15825	17195	0	7
P-0071526-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39709845	39710675	Exon 7 of TOP1(+)	Intron of TOP1(+):795bp after exon 7		GRCh37	INVERSION	10	13	TOP1-intragenic	PRECISE	5to5	TOP1 (NM_003286) rearrangement: c.472_c.507+795inv	yes	unknown	830	364	1097	0	16
P-0020579-T01-IM6	SOMATIC	TOP1		20	11	39706279	58574196	Intron of TOP1(+):2bp after exon 5	IGR: 27Kb before GLYATL2(-)		GRCh37	TRANSLOCATION			TOP1-intragenic	PRECISE	3to5	TOP1 (NM_003286) rearrangement: t(11;20)(q12.2;q12)(chr11:g.58574196::chr20:g.39706279)			0	0	0	0	6
P-0056854-T01-IM6	SOMATIC	TOP1		20	20	38343636	39744025	IGR: 289Kb before LINC01370(+)	Exon 16 of TOP1(+)		GRCh37	DELETION			TOP1-intragenic	IMPPRECISE	3to5	TOP1 (NM_003286) rearrangement: c.1653:TOP1_chr20:g.38343636del			1400389	17143	17040	0	6
P-0002855-T01-IM3	SOMATIC	TOP1MT	RECQL4	8	8	144394753	145742055	Intron of TOP1MT(-): 2Kb before exon 13	Exon 5 of RECQL4(-)		GRCh37	DELETION	22	17	Protein fusion: mid-exon (RECQL4-TOP1MT)	PRECISE	3to5		yes	unknown	1347302	33564	30408	0	19
P-0074786-T01-IM7	SOMATIC	TP53	NCOR1	17	17	7579196	16009687	Intron of TP53(-):115bp after exon 4	Intron of NCOR1(-):2Kb after exon 19		GRCh37	INVERSION	10	5	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) - NCOR1 (NM_006311) rearrangement: c.375+116:TP53_c.2182+2413:NCOR1inv	yes	unknown	8430491	137634	71290	0	5
P-0009687-T01-IM5	SOMATIC	TP53	SPG11	17	15	7579206	44943476	Intron of TP53(-): 106bp after exon 4	Intron of SPG11(-): 213bp after exon 6		GRCh37	TRANSLOCATION	16	16	Antisense fusion	PRECISE	5to5	TP53 (NM_000546) - SPG11 (NM_025137) rearrangement: t(15;17)(q21.1;p13.1)(chr15:g.44943476::chr17:g.7579206)	yes	unknown	0	0	0	0	16
P-0050153-T01-IM6	SOMATIC	TP53	TP53	17	17	7577001	7581384	Intron of TP53(-):17bp after exon 8	5-UTR of TP53(-):8Kb before coding start		GRCh37	INVERSION	10	15	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.919+18:TP53_chr17:g.7581384inv	yes	unknown	4383	15318	17803	0	22
P-0059719-T01-IM7	SOMATIC	TP53	GAS7	17	17	7579493	9861802	Exon 4 of TP53(-)	Intron of GAS7(-):716bp after exon 1		GRCh37	INVERSION	10	50	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.194:TP53_chr17:g.9861802inv	yes	unknown	2282309	77597	63960	0	60
P-0043158-T01-IM6	SOMATIC	TP53	TP53	17	17	1926474	7576832	Intron of RTN4RL1(-):2Kb after exon 1	Intron of TP53(-):20bp after exon 9		GRCh37	INVERSION	10	59	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.993+21:TP53_chr17:g.1926474inv	yes	unknown	5650358	24135	17572	0	70
P-0035825-T01-IM6	SOMATIC	TP53	PTPRJ	17	11	7578421	48110744	Exon 5 of TP53(-)	Intron of PTPRJ(+):21Kb before exon 2		GRCh37	TRANSLOCATION	10	47	Antisense Fusion	PRECISE	5to3	TP53 (NM_000546) Rearrangement : t(11,17)(p11.2,p13.1)(chr11:g.48110744::chr17:g.7578421)	yes	unknown	0	0	0	0	48
P-0041432-T01-IM6	SOMATIC	TP53	TP53	17	17	687501	7572936	Intron of RNMTL1(+):934bp after exon 2	Exon 11 of TP53(-)		GRCh37	DELETION	10	122	Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.1173:TP53_chr17:g.687501del	yes	unknown	6885435	21894	29314	0	130
P-0061915-T01-IM7	SOMATIC	TP53	TP53	17	17	7576015	7579188	Intron of TP53(-):837bp after exon 9	Intron of TP53(-):123bp after exon 4		GRCh37	INVERSION	0	17	Antisense Fusion	IMPPRECISE	5to5	TP53 (NM_000546) rearrangement: c.375+124_c.993+838inv	yes	unknown	3173	8754	6469	0	17
P-0069670-T01-IM7	SOMATIC	TP53	TBK1	17	12	7579837	64898580	Intron of TP53(-):1bp after exon 2	Promoter of TBK1(+):53Kb from tx start		GRCh37	TRANSLOCATION	10	71	Antisense Fusion	PRECISE	5to3	TP53 (NM_000546) rearrangement: t(12;17)(q14.2;p13.1)(chr12:g.64898580::chr17:g.7579837)	yes	unknown	0	0	0	0	72
P-0070706-T01-IM7	SOMATIC	TP53	TP53	17	17	7573908	7579908	Intron of TP53(-):18bp after exon 10	Exon 2 of TP53(-)		GRCh37	INVERSION	10	25	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.5_c.1100+19inv	yes	unknown	6000	12285	8160	0	27
P-0073864-T01-IM7	SOMATIC	TP53	TP53	17	17	7587536	7591181	5-UTR of TP53(-):15Kb before coding start	Promoter of TP53(-):19Kb from tx start		GRCh37	INVERSION	10	128	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.-515_c.-29+3159inv	yes	unknown	3645	10946	19724	0	136
P-0074123-T01-IM7	SOMATIC	TP53	TP53	17	17	7487574	7581484	Intron of MPDU1(+):291bp after exon 1	5-UTR of TP53(-):9Kb before coding start		GRCh37	DELETION	10	17	Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-1544:TP53_chr17:g.7487574del	yes	unknown	93910	20827	21474	0	17
P-0062386-T01-IM7	SOMATIC	TP53	TP53	17	17	7559104	7578063	Exon 7 of ATP1B2(+)	Intron of TP53(-):113bp after exon 6		GRCh37	DELETION	10	38	Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.672+114:TP53_chr17:g.7559104del	yes	unknown	18959	13796	12642	0	39
P-0076666-T03-IM7	SOMATIC	TP53	TP53	17	17	7578984	7588276	Intron of TP53(-):327bp after exon 4	5-UTR of TP53(-):15Kb before coding start		GRCh37	INVERSION	10	38	Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.375+328:TP53_chr17:g.7588276inv	yes	unknown	9292	19912	28167	0	52
P-0081157-T01-IM7	SOMATIC	TP53		17	3	7577540	184562339	Exon 7 of TP53(-)	Intron of VPS8(+):5Kb before exon 8		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to3	TP53 (NM_000546) rearrangement: t(3;17)(q27.2;p13.1)(chr3:g.184562339::chr17:g.7577540)			0	0	0	0	11
P-0024631-T01-IM6	SOMATIC	TP53		17	17	7554166	7579903	Promoter of ATP1B2(+):87bp from tx start	Exon 2 of TP53(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: chr17:g.7554166_c.10del			25737	17747	11897	0	13
P-0060483-T01-IM7	SOMATIC	TP53		17	17	7529040	7572950	5-UTR of SHBG(+):5Kb before coding start	Exon 11 of TP53(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.1159:TP53_chr17:g.7529040del			43910	4342	5115	0	51
P-0084613-T01-IM7	SOMATIC	TP53		17	1	7587831	230464401	5-UTR of TP53(-):15Kb before coding start	Intron of PGBD5(-):3Kb before exon 6		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(1;17)(q42.13;p13.1)(chr1:g.230464401::chr17:g.7587831)			0	0	0	0	10
P-0010894-T02-IM7	SOMATIC	TP53		17	17	7575244	7587434	Intron of TP53(-):1Kb before exon 10	5-UTR of TP53(-):15Kb before coding start		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.994-1211:TP53_chr17:g.7587434inv			12190	20364	23589	0	8
P-0038184-T01-IM6	SOMATIC	TP53	TP53	17	17	7577243	7578113	Intron of TP53(-):88bp before exon 8	Intron of TP53(-):63bp after exon 6		GRCh37	DELETION	10	68	Deletion of 1 exon : out of frame	PRECISE	3to5	TP53 (NM_000546) Rearrangement: c.672+64_c.783-88del	yes	unknown	870	2723	1932	0	70
P-0068134-T02-IM7	SOMATIC	TP53	TP53	17	17	7575102	7576932	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):6bp before exon 9		GRCh37	DELETION	10	95	Deletion of 1 exon : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.920-6_c.994-1069del	yes	unknown	1830	867	393	0	99
P-0068749-T01-IM7	SOMATIC	TP53		17	17	7573914	7575618	Intron of TP53(-):12bp after exon 10	Intron of TP53(-):1Kb after exon 9		GRCh37	DELETION			Deletion of 1 exon : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.993+1235_c.1100+13del			1704	749	534	0	8
P-0087994-T02-IM7	SOMATIC	TP53		17	17	7577930	7579204	Intron of TP53(-):246bp after exon 6	Intron of TP53(-):107bp after exon 4		GRCh37	DELETION			Deletion of 2 exons : in frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+108_c.672+247del			1274	3956	906	0	72
P-0045964-T01-IM6	SOMATIC	TP53	TP53	17	17	7579094	7579724	Intron of TP53(-):217bp after exon 4	Intron of TP53(-):3bp before exon 3		GRCh37	DELETION	10	19	Deletion of 2 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.75-3_c.375+218del	yes	unknown	630	3147	3320	0	19
P-0044782-T01-IM6	SOMATIC	TP53	TP53	17	17	7575137	7577390	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):108bp after exon 7		GRCh37	DELETION	10	25	Deletion of 2 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.782+109_c.994-1104del	yes	unknown	2253	3865	3587	0	26
P-0020884-T01-IM6	SOMATIC	TP53		17	17	7576934	7577695	Intron of TP53(-):8bp before exon 9	Intron of TP53(-):87bp before exon 7		GRCh37	DELETION			Deletion of 2 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.920-8_c.673-87del			761	4419	2641	0	33
P-0044296-T01-IM6	SOMATIC	TP53	TP53	17	17	7573260	7577362	Intron of TP53(-):252bp before exon 11	Intron of TP53(-):136bp after exon 7		GRCh37	DELETION	10	28	Deletion of 3 exons : in frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.782+137_c.1101-252del	yes	unknown	4102	4793	3638	0	29
P-0064140-T01-IM7	SOMATIC	TP53	TP53	17	17	7577837	7579670	Intron of TP53(-):229bp before exon 7	Intron of TP53(-):29bp after exon 3		GRCh37	DELETION	10	30	Deletion of 3 exons : in frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.96+30_c.673-229del	yes	unknown	1833	6747	3128	0	43
P-0082974-T01-IM7	SOMATIC	TP53		17	17	7576403	7577822	Intron of TP53(-):449bp after exon 9	Intron of TP53(-):214bp before exon 7		GRCh37	DELETION			Deletion of 3 exons : in frame	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.673-214_c.993+450del			1419	5117	6223	0	11
P-0030493-T01-IM6	SOMATIC	TP53	TP53	17	17	7574999	7578335	Intron of TP53(-):966bp before exon 10	Intron of TP53(-):35bp after exon 5		GRCh37	DELETION	10	150	Deletion of 4 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.559+36_c.994-966del	yes	unknown	3336	6301	2232	0	157
P-0041157-T01-IM6	SOMATIC	TP53	TP53	17	17	7576254	7578333	Intron of TP53(-):598bp after exon 9	Intron of TP53(-):37bp after exon 5		GRCh37	DELETION	10	36	Deletion of 4 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.559+38_c.993+599del	yes	unknown	2079	7939	4999	0	58
P-0051534-T02-IM7	SOMATIC	TP53	TP53	17	17	7573765	7578119	Intron of TP53(-):161bp after exon 10	Intron of TP53(-):57bp after exon 6		GRCh37	DELETION	0	7	Deletion of 4 exons : out of frame	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.672+58_c.1100+162del	yes	unknown	4354	6330	1393	0	9
P-0072072-T01-IM7	SOMATIC	TP53	TP53	17	17	7574365	7579291	Intron of TP53(-):332bp before exon 10	Intron of TP53(-):20bp after exon 4		GRCh37	DELETION	10	44	Deletion of 5 exons : in frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+21_c.994-332del	yes	unknown	4926	5229	6722	0	52
P-0075363-T02-IM7	SOMATIC	TP53	TP53	17	17	7575431	7579125	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):186bp after exon 4		GRCh37	DELETION	10	17	Deletion of 5 exons : in frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+187_c.994-1398del	yes	unknown	3694	4859	4598	0	18
P-0079082-T02-IM7	SOMATIC	TP53	TP53	17	17	7576412	7579192	Intron of TP53(-):440bp after exon 9	Intron of TP53(-):119bp after exon 4		GRCh37	DELETION	0	8	Deletion of 5 exons : in frame	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+120_c.993+441del	yes	unknown	2780	8066	7993	0	9
P-0050976-T01-IM6	SOMATIC	TP53	TP53	17	17	7577003	7579626	Intron of TP53(-):15bp after exon 8	Intron of TP53(-):36bp before exon 4		GRCh37	DELETION	10	105	Deletion of 5 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.97-36_c.919+16del	yes	unknown	2623	11067	6290	0	117
P-0026701-T01-IM6	SOMATIC	TP53	TP53	17	17	7574891	7579632	Intron of TP53(-):858bp before exon 10	Intron of TP53(-):42bp before exon 4		GRCh37	DELETION	10	18	Deletion of 6 exons : in frame	PRECISE	3to5	TP53 (NM_000546):c.97-42_c.994-858del	yes	unknown	4741	12586	7232	0	83
P-0054158-T01-IM6	SOMATIC	TP53	TP53	17	17	7573237	7579259	Intron of TP53(-):229bp before exon 11	Intron of TP53(-):52bp after exon 4		GRCh37	DELETION	10	51	Deletion of 6 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+53_c.1101-229del	yes	unknown	6022	17815	17908	0	53
P-0050516-T01-IM6	SOMATIC	TP53	TP53	17	17	7576928	7579727	Intron of TP53(-):2bp before exon 9	Intron of TP53(-):6bp before exon 3		GRCh37	DELETION	10	88	Deletion of 6 exons : out of frame	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.75-6_c.920-2del	yes	unknown	2799	9391	10871	0	95
P-0004827-T01-IM5	SOMATIC	TP53	TP53	17	17	7579591	7581279	Intron of TP53(-): 1bp before exon 4	5-UTR of TP53(-): 1Kb before coding start		GRCh37	DELETION	25	20	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement : c.-28-1339_97-1del	yes	unknown	1688	3850	3681	0	19
P-0020406-T01-IM6	SOMATIC	TP53	TP53	17	17	7569610	7574378	Promoter of TP53(-):2Kb from tx start	Intron of TP53(-):345bp before exon 10		GRCh37	DELETION	10	17	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement:  c.994-345_c.*3317del	yes	unknown	4768	3158	726	0	65
P-0050152-T01-IM6	SOMATIC	TP53	TP53	17	17	7577694	7582323	Intron of TP53(-):86bp before exon 7	5-UTR of TP53(-):9Kb before coding start		GRCh37	DELETION	0	15	Deletion within transcript	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.673-86:TP53_chr17:g.7582323del	yes	unknown	4629	11077	8035	0	22
P-0058293-T02-IM7	SOMATIC	TP53	TP53	17	17	7579152	7590879	Intron of TP53(-):159bp after exon 4	Promoter of TP53(-):19Kb from tx start		GRCh37	DELETION	10	7	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+160:TP53_chr17:g.7590879del	yes	unknown	11727	27549	14925	0	7
P-0065705-T01-IM7	SOMATIC	TP53	TP53	17	17	7578072	7582678	Intron of TP53(-):104bp after exon 6	5-UTR of TP53(-):10Kb before coding start		GRCh37	DELETION	10	10	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.672+105:TP53_chr17:g.7582678del	yes	unknown	4606	12363	1186	0	10
P-0066623-T01-IM7	SOMATIC	TP53	TP53	17	17	7570824	7579287	Promoter of TP53(-):895bp from tx start	Intron of TP53(-):24bp after exon 4		GRCh37	DELETION	10	59	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+25:TP53_chr17:g.7570824del	yes	unknown	8463	16905	7371	0	59
P-0067339-T02-IM7	SOMATIC	TP53	TP53	17	17	7575699	7589630	Intron of TP53(-):1Kb after exon 9	5-UTR of TP53(-):17Kb before coding start		GRCh37	DELETION	10	6	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.993+1154:TP53_chr17:g.7589630del	yes	unknown	13931	44845	52138	0	8
P-0072746-T01-IM7	SOMATIC	TP53	TP53	17	17	7581946	7583781	5-UTR of TP53(-):9Kb before coding start	5-UTR of TP53(-):11Kb before coding start		GRCh37	DELETION	10	10	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-3841_c.-28-2006del	yes	unknown	1835	2764	6061	0	10
P-0073920-T02-IM7	SOMATIC	TP53	TP53	17	17	7585550	7593192	5-UTR of TP53(-):13Kb before coding start	Promoter of TP53(-):21Kb from tx start		GRCh37	DELETION	0	6	Deletion within transcript	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.-29+5145_c.-2526del	yes	unknown	7642	18367	23050	0	7
P-0077804-T01-IM7	SOMATIC	TP53	TP53	17	17	7577742	7580387	Intron of TP53(-):134bp before exon 7	5-UTR of TP53(-):7Kb before coding start		GRCh37	DELETION	0	4	Deletion within transcript	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.673-134:TP53_chr17:g.7580387del	yes	unknown	2645	3578	4723	0	4
P-0077997-T01-IM7	SOMATIC	TP53	TP53	17	17	7569469	7586339	Promoter of TP53(-):2Kb from tx start	5-UTR of TP53(-):13Kb before coding start		GRCh37	DELETION	10	35	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.*3458:TP53_chr17:g.7586339del	yes	unknown	16870	28263	21699	0	44
P-0077575-T02-IM7	SOMATIC	TP53	TP53	17	17	7581688	7591503	5-UTR of TP53(-):9Kb before coding start	Promoter of TP53(-):20Kb from tx start		GRCh37	DELETION	10	27	Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement : c.-837_c.-28-1748del	yes	unknown	9815	23771	15495	0	27
P-0048828-T01-IM6	SOMATIC	TP53		17	17	7578616	7581327	Intron of TP53(-):62bp before exon 5	5-UTR of TP53(-):8Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.376-62:TP53_chr17:g.7581327del			2711	5632	5725	0	64
P-0049764-T01-IM6	SOMATIC	TP53		17	17	7577703	7581798	Intron of TP53(-):95bp before exon 7	5-UTR of TP53(-):9Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.673-95:TP53_chr17:g.7581798del			4095	11355	7800	0	13
P-0070629-T01-IM7	SOMATIC	TP53		17	17	7576436	7582895	Intron of TP53(-):416bp after exon 9	5-UTR of TP53(-):10Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.993+417:TP53_chr17:g.7582895del			6459	17886	15178	0	25
P-0072894-T01-IM7	SOMATIC	TP53		17	17	7580484	7582153	5-UTR of TP53(-):8Kb before coding start	5-UTR of TP53(-):9Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-2213_c.-28-544del			1669	4669	5122	0	19
P-0075812-T03-IM7	SOMATIC	TP53		17	17	7579023	7584325	Intron of TP53(-):288bp after exon 4	5-UTR of TP53(-):11Kb before coding start		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+289:TP53_chr17:g.7584325del			5302	13754	9282	0	14
P-0018462-T01-IM6	SOMATIC	TP53	TP53	17	17	7577044	7578533	Exon 8 of TP53(-)	Exon 5 of TP53(-)		GRCh37	DELETION	10	37	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.397_c.894del	yes	unknown	1489	5844	7188	0	40
P-0036760-T01-IM6	SOMATIC	TP53	TP53	17	17	7576780	7578413	Intron of TP53(-):72bp after exon 9	Exon 5 of TP53(-)		GRCh37	DELETION	10	34	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.517_c.993+73del	yes	unknown	1633	5981	3659	0	106
P-0039063-T01-IM6	SOMATIC	TP53	TP53	17	17	7577129	7579498	Exon 8 of TP53(-)	Exon 4 of TP53(-)		GRCh37	DELETION	10	56	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.189_c.809del	yes	unknown	2369	7544	6551	0	60
P-0045498-T02-IM6	SOMATIC	TP53	TP53	17	17	7576262	7578410	Intron of TP53(-):590bp after exon 9	Exon 5 of TP53(-)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.520_c.993+591del	yes	unknown	2148	7899	9707	0	19
P-0056185-T01-IM6	SOMATIC	TP53	TP53	17	17	7579564	7580741	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start		GRCh37	DELETION	10	220	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.123:TP53_chr17:g.7580741del	yes	unknown	1177	4142	2954	0	245
P-0057798-T01-IM6	SOMATIC	TP53	TP53	17	17	7572933	7576463	Exon 11 of TP53(-)	Intron of TP53(-):389bp after exon 9		GRCh37	DELETION	10	4	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.993+390_c.1176del	yes	unknown	3530	2720	3115	0	4
P-0042223-T01-IM6	SOMATIC	TP53	TP53	17	17	7577139	7579765	Exon 8 of TP53(-)	Intron of TP53(-):44bp before exon 3		GRCh37	DELETION	10	51	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.75-44_c.799del	yes	unknown	2626	11720	8113	0	54
P-0040042-T01-IM6	SOMATIC	TP53	TP53	17	17	7575746	7577526	Intron of TP53(-):1Kb after exon 9	Exon 7 of TP53(-)		GRCh37	DELETION	10	25	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.755_c.993+1107del	yes	unknown	1780	4386	4808	0	29
P-0064364-T01-IM7	SOMATIC	TP53	TP53	17	17	7578303	7579899	Intron of TP53(-):14bp before exon 6	Exon 2 of TP53(-)		GRCh37	DELETION	10	26	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.14_c.560-14del	yes	unknown	1596	5634	3397	0	27
P-0066303-T02-IM7	SOMATIC	TP53	TP53	17	17	7578395	7580402	Exon 5 of TP53(-)	5-UTR of TP53(-):7Kb before coding start		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.535:TP53_chr17:g.7580402del	yes	unknown	2007	7415	8918	0	7
P-0068443-T01-IM7	SOMATIC	TP53	TP53	17	17	7578256	7581857	Exon 6 of TP53(-)	5-UTR of TP53(-):9Kb before coding start		GRCh37	DELETION	10	27	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.593:TP53_chr17:g.7581857del	yes	unknown	3601	10947	12996	0	29
P-0069685-T01-IM7	SOMATIC	TP53	TP53	17	17	7574638	7579365	Intron of TP53(-):605bp before exon 10	Exon 4 of TP53(-)		GRCh37	DELETION	10	50	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.322_c.994-605del	yes	unknown	4727	7807	10173	0	51
P-0074647-T01-IM7	SOMATIC	TP53	TP53	17	17	7579546	7584596	Exon 4 of TP53(-)	5-UTR of TP53(-):12Kb before coding start		GRCh37	DELETION	0	16	Deletion within transcript : mid-exon	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.141:TP53_chr17:g.7584596del	yes	unknown	5050	15567	15906	0	19
P-0075081-T02-IM7	SOMATIC	TP53	TP53	17	17	7573996	7575377	Exon 10 of TP53(-)	Intron of TP53(-):1Kb before exon 10		GRCh37	DELETION	7	7	Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.994-1344_c.1031del	yes	unknown	1381	408	396	0	7
P-0077027-T01-IM7	SOMATIC	TP53	TP53	17	17	7576905	7578053	Exon 9 of TP53(-)	Intron of TP53(-):123bp after exon 6		GRCh37	DELETION	0	14	Deletion within transcript : mid-exon	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.672+124_c.941del	yes	unknown	1148	2479	2805	0	14
P-0051593-T01-IM6	SOMATIC	TP53		17	17	7578265	7580180	Exon 6 of TP53(-)	5-UTR of TP53(-):7Kb before coding start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.584:TP53_chr17:g.7580180del			1915	6944	10034	0	43
P-0059659-T03-IM7	SOMATIC	TP53		17	17	7575679	7578470	Intron of TP53(-):1Kb after exon 9	Exon 5 of TP53(-)		GRCh37	DELETION			Deletion within transcript : mid-exon	IMPPRECISE	3to5	TP53 (NM_000546) rearrangement: c.460_c.993+1174del			2791	4506	125	0	12
P-0012925-T01-IM5	SOMATIC	TP53	TP53	17	17	7579480	7581627	Exon 4 of TP53(-)	5-UTR of TP53(-): 2Kb before coding start		GRCh37	DELETION	16	14	Deletion within transcript: mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-1687_c.207del	yes	unknown	2147	4231	869	0	14
P-0014511-T01-IM6	SOMATIC	TP53	TP53	17	17	7577530	7579480	Exon 7 of TP53(-)	Exon 4 of TP53(-)		GRCh37	DELETION	80	79	Deletion within transcript: mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.207_c.751del	yes	unknown	1950	13381	8817	0	77
P-0006793-T01-IM5	SOMATIC	TP53	TP53	17	17	7579438	7581047	Exon 4 of TP53(-)	5-UTR of TP53(-): 1Kb before coding start		GRCh37	DELETION	44	20	Deletion within transcript: mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-1107_c.249del.	yes	unknown	1609	7135	6089	0	19
P-0004387-T02-IM5	SOMATIC	TP53	TP53	17	17	7579511	7580798	Exon 4 of TP53(-)	5-UTR of TP53(-): 886bp before coding start		GRCh37	DELETION	20	6	Deletion within transcript: mid-exon	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-858_c.176del	yes	unknown	1287	3684	2921	0	6
P-0064244-T01-IM7	SOMATIC	TP53	TP53	17	17	7577965	7578573	Intron of TP53(-):211bp after exon 6	Intron of TP53(-):19bp before exon 5		GRCh37	DUPLICATION	10	70	Duplication of 2 exons : in frame	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.376-19_c.672+212dup	yes	unknown	608	3894	4169	0	71
P-0077045-T01-IM7	SOMATIC	TP53	TP53	17	17	7577945	7578982	Intron of TP53(-):231bp after exon 6	Intron of TP53(-):329bp after exon 4		GRCh37	DUPLICATION	5	5	Duplication of 2 exons : in frame	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.375+330_c.672+232dup	yes	unknown	1037	2910	4153	0	5
P-0066245-T01-IM7	SOMATIC	TP53	TP53	17	17	7578948	7580575	Intron of TP53(-):363bp after exon 4	5-UTR of TP53(-):8Kb before coding start		GRCh37	DUPLICATION	10	31	Duplication within transcript	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.375+364:TP53_chr17:g.7580575dup	yes	unknown	1627	5282	9645	0	32
P-0077891-T01-IM7	SOMATIC	TP53	TP53	17	17	7578715	7580256	Intron of TP53(-):161bp before exon 5	5-UTR of TP53(-):7Kb before coding start		GRCh37	DUPLICATION	10	46	Duplication within transcript	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.376-161:TP53_chr17:g.7580256dup	yes	unknown	1541	3882	7346	0	56
P-0038819-T01-IM6	SOMATIC	TP53		17	17	7578110	7582525	Intron of TP53(-):66bp after exon 6	5-UTR of TP53(-):10Kb before coding start		GRCh37	DUPLICATION			Duplication within transcript	IMPPRECISE	5to3	TP53 (NM_000546) Rearrangement : c.-28-2585_c.672+67dup			4415	10146	12650	0	8
P-0085831-T02-IM7	SOMATIC	TP53		17	17	7577769	7590813	Intron of TP53(-):161bp before exon 7	5-UTR of TP53(-):18Kb before coding start		GRCh37	DUPLICATION			Duplication within transcript	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.673-161:TP53_chr17:g.7590813dup			13044	25332	61361	1	30
P-0019365-T01-IM6	SOMATIC	TP53	TP53	17	17	7577066	7588780	Exon 8 of TP53(-)	5-UTR of TP53(-):16Kb before coding start		GRCh37	DUPLICATION	10	9	Duplication within transcript : mid-exon	PRECISE	5to3	TP53 (NM_000546) Rearrangement : c.-29+1915_c.872dup	yes	unknown	11714	15761	21214	0	9
P-0031409-T01-IM6	SOMATIC	TP53	TP53	17	17	7577127	7581801	Exon 8 of TP53(-)	5-UTR of TP53(-):9Kb before coding start		GRCh37	DUPLICATION	10	19	Duplication within transcript : mid-exon	PRECISE	5to3	TP53 (NM_000546) Rearrangement : c.-28-1861_c.811dup	yes	unknown	4674	13293	14712	0	20
P-0075517-T01-IM7	SOMATIC	TP53	TP53	17	17	7578511	7580923	Exon 5 of TP53(-)	5-UTR of TP53(-):8Kb before coding start		GRCh37	DUPLICATION	10	77	Duplication within transcript : mid-exon	PRECISE	5to3	TP53 (NM_000546) rearrangement: c.419:TP53_chr17:g.7580923dup	yes	unknown	2412	7861	13013	0	81
P-0014583-T01-IM6	SOMATIC	TP53		17	17	7576943	7579700	Intron of TP53(-): 17bp before exon 9	Exon 3 of TP53(-)		GRCh37	DUPLICATION			Duplication within transcript: mid-exon	IMPRECISE	5to3	TP53 (NM_000546) rearrangement: c.96_c.920-17dup.			2757	13998	9792	0	18
P-0035483-T01-IM6	SOMATIC	TP53	EXOC6B	17	2	7578081	72450142	Intron of TP53(-):95bp after exon 6	Intron of EXOC6B(-):39Kb before exon 21		GRCh37	TRANSLOCATION	0	5	Protein Fusion: in frame  {TP53:EXOC6B}	IMPPRECISE	5to3	TP53 (NM_000546) - EXOC6B (NM_015189) rearrangement: t(2;17)(p13.2;p13.1)(chr2:g.72450142::chr17:g.7578081)	yes	unknown	0	0	0	0	5
P-0026009-T01-IM6	SOMATIC	TP53	GAS7	17	17	7574031	9978085	Exon 10 of TP53(-)	Intron of GAS7(-):55Kb before exon 2		GRCh37	DELETION	10	39	Protein Fusion: mid-exon  {GAS7:TP53}	PRECISE	3to5	GAS7 (NM_201433) - TP53 (NM_000546) rearrangement: c.184-54871:GAS7_c.996:TP53del	yes	unknown	2404054	57594	66058	0	40
P-0030800-T01-IM6	SOMATIC	TP53	DNAH2	17	17	7576827	7710160	Intron of TP53(-):25bp after exon 9	Intron of DNAH2(+):307bp before exon 61		GRCh37	INVERSION	10	42	Protein Fusion: out of frame  {TP53:DNAH2}	PRECISE	5to5	TP53 (NM_000546) - DNAH2 (NM_020877) Rearrangement : c.993+26:TP53_c.9443-308:DNAH2inv	yes	unknown	133333	15339	15368	0	56
P-0053607-T02-IM6	SOMATIC	TP53	NF1	17	17	7577448	29436090	Intron of TP53(-):50bp after exon 7	Intron of NF1(+):14Kb after exon 1		GRCh37	INVERSION	10	89	Protein Fusion: out of frame  {TP53:NF1}	PRECISE	5to5	TP53 (NM_000546) - NF1 (NM_001042492) rearrangement: c.782+51:TP53_c.60+13703:NF1inv	yes	unknown	21858642	185473	176592	0	98
P-0045740-T01-IM6	SOMATIC	TP53	UNC13D	17	17	7576800	73833059	Intron of TP53(-):52bp after exon 9	Intron of UNC13D(-):60bp before exon 13		GRCh37	DUPLICATION	10	5	Protein Fusion: out of frame  {TP53:UNC13D}	PRECISE	5to3	TP53 (NM_000546) - UNC13D (NM_199242) rearrangement: c.993+53:TP53_c.1056-60:UNC13Ddup	yes	unknown	66256259	541574	638667	0	6
P-0023741-T01-IM6	SOMATIC	TP53	AFAP1L2	17	10	7580804	116100904	5-UTR of TP53(-):8Kb before coding start	Intron of AFAP1L2(-):414bp before exon 2		GRCh37	TRANSLOCATION			TP53- AFAP1L2 Fusion	PRECISE	3to3	TP53 (NM_000546) - AFAP1L2 (NM_001001936) rearrangement: t(10;17)(q25.3;p13.1)(chr10:g.116100904::chr17:g.7580804)			0	0	0	0	14
P-0007169-T01-IM5	SOMATIC	TP53	TP53	17	17	7571803	7577114	3-UTR of TP53(-): 1Kb after coding stop	Exon 8 of TP53(-)		GRCh37	DELETION	126	64	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.824_c.*1124del	yes	unknown	5311	10677	5710	0	64
P-0004113-T01-IM5	SOMATIC	TP53	TP53	17	17	7573088	7574530	Intron of TP53(-): 80bp before exon 11	Intron of TP53(-): 497bp before exon 10		GRCh37	INVERSION	8	7	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement event: c.994-497_1101-80inv	yes	unknown	1442	2297	1695	0	6
P-0010243-T01-IM5	SOMATIC	TP53	TP53	17	17	7572510	7579231	3-UTR of TP53(-): 417bp after coding stop	Intron of TP53(-): 81bp after exon 4		GRCh37	DELETION	19	14	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) Rearrangement :  c.375+81_c.*417del	yes	unknown	6721	12504	10782	0	12
P-0016643-T01-IM6	SOMATIC	TP53	TP53	17	17	7572418	7574101	3-UTR of TP53(-):508bp after coding stop	Intron of TP53(-):68bp before exon 10		GRCh37	INVERSION	10	85	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546)  rearrangement : chr17:g.7572418_c.994-68:TP53inv	yes	unknown	1683	1857	3814	0	85
P-0045213-T01-IM6	SOMATIC	TP53	FRK	17	6	7579873	116160774	Exon 2 of TP53(-)	IGR: 102Kb before FRK(-)		GRCh37	TRANSLOCATION	10	28	TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(6;17)(q22.1;p13.1)(chr6:g.116160774::chr17:g.7579873)	yes	unknown	0	0	0	0	42
P-0045619-T01-IM6	SOMATIC	TP53	PTCD3	17	2	7576703	86353784	Intron of TP53(-):149bp after exon 9	Intron of PTCD3(+):499bp before exon 13		GRCh37	TRANSLOCATION	10	21	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: t(2;17)(p11.2;p13.1)(chr2:g.86353784::chr17:g.7576703)	yes	unknown	0	0	0	0	21
P-0045906-T01-IM6	SOMATIC	TP53	LINC02239	17	5	7578066	25413095	Intron of TP53(-):110bp after exon 6	IGR: 578Kb before LOC340107(-)		GRCh37	TRANSLOCATION	0	9	TP53-intragenic	IMPPRECISE	5to5	TP53 (NM_000546) rearrangement: t(5;17)(p14.1;p13.1)(chr5:g.25413095::chr17:g.7578066)	yes	unknown	0	0	0	0	9
P-0043100-T02-IM6	SOMATIC	TP53	TP53	17	17	7575719	7577036	Intron of TP53(-):1Kb after exon 9	Exon 8 of TP53(-)		GRCh37	INVERSION	10	20	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.902_c.993+1134inv	yes	unknown	1317	2427	1709	0	28
P-0050143-T01-IM6	SOMATIC	TP53	NDEL1	17	17	7574037	8374380	Intron of TP53(-):4bp before exon 10	Promoter of NDEL1(+):35Kb from tx start		GRCh37	DELETION	10	32	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.994-4:TP53_chr17:g.8374380del	yes	unknown	800343	54800	70221	0	34
P-0053072-T01-IM6	SOMATIC	TP53	TP53	20	17	57221188	7578162	IGR: 5Kb before STX16-NPEPL1(+)	Intron of TP53(-):14bp after exon 6		GRCh37	TRANSLOCATION	10	108	TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.32)(chr17:g.7578162::chr20:g.57221188)	yes	unknown	0	0	0	0	132
P-0059678-T01-IM7	SOMATIC	TP53	WNT5A	17	3	7576503	55393069	Intron of TP53(-):349bp after exon 9	IGR: 107Kb before WNT5A(-)		GRCh37	TRANSLOCATION	10	10	TP53-intragenic	PRECISE	5to3	TP53 (NM_000546) rearrangement: t(3;17)(p14.3;p13.1)(chr3:g.55393069::chr17:g.7576503)	yes	unknown	0	0	0	0	10
P-0021318-T01-IM6	SOMATIC	TP53	TP53	17	17	7572407	7573997	3-UTR of TP53(-):519bp after coding stop	Exon 10 of TP53(-)		GRCh37	DELETION	10	43	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.*520_c.1030del	yes	unknown	1590	2600	1777	0	46
P-0049188-T01-IM6	SOMATIC	TP53	ARHGEF15	17	17	7573962	8205033	Exon 10 of TP53(-)	IGR: 9Kb before ARHGEF15(+)		GRCh37	DELETION	10	82	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.1065:TP53_chr17:g.8205033del	yes	unknown	631071	75640	77255	0	106
P-0071497-T01-IM7	SOMATIC	TP53	TP53	17	17	7579109	7582191	Intron of TP53(-):202bp after exon 4	5-UTR of TP53(-):9Kb before coding start		GRCh37	INVERSION	10	14	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.375+203:TP53_chr17:g.7582191inv	yes	unknown	3082	5598	5513	0	13
P-0072906-T01-IM7	SOMATIC	TP53	TP53	17	17	7201101	7577614	IGR: 9Kb before EIF5A(+)	Intron of TP53(-):6bp before exon 7		GRCh37	DELETION	10	5	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.673-6:TP53_chr17:g.7201101del	yes	unknown	376513	24335	23278	0	6
P-0073564-T01-IM7	SOMATIC	TP53	TP53	20	17	33794996	7587738	IGR: 20Kb before MMP24(+)	5-UTR of TP53(-):15Kb before coding start		GRCh37	TRANSLOCATION	10	7	TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement:  t(17;20)(q13.3;q24.1)(chr17:g.7587738::chr20:g.33794996)	yes	unknown	0	0	0	0	7
P-0074951-T01-IM7	SOMATIC	TP53	CELA2B	17	1	7583667	15817849	5-UTR of TP53(-):11Kb before coding start	3-UTR of CELA2B(+):15Kb after coding stop		GRCh37	TRANSLOCATION	10	78	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: t(1;17)(p36.21;q13.1)(chr1:g.15817849::chr17:g.7583667)	yes	unknown	0	0	0	0	79
P-0075269-T01-IM7	SOMATIC	TP53	ALOX12B	17	17	7589189	7960093	5-UTR of TP53(-):16Kb before coding start	IGR: 16Kb before ALOX12B(-)		GRCh37	DELETION	10	25	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-29+1506:TP53_chr17:g.7960093del	yes	unknown	370904	10453	9278	0	26
P-0075569-T01-IM7	SOMATIC	TP53	TP53	19	17	36825744	7586082	3-UTR of ZFP14(-):5Kb after coding stop	5-UTR of TP53(-):13Kb before coding start		GRCh37	TRANSLOCATION	10	26	TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(17;19)(p13.1;q13.12)(chr17:g.7586082::chr19:g.36825744)	yes	unknown	0	0	0	0	27
P-0075285-T01-IM7	SOMATIC	TP53	SCO1	17	17	7588588	10568428	5-UTR of TP53(-):16Kb before coding start	IGR: 15Kb before SCO1(-)		GRCh37	INVERSION	10	104	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.-29+2107:TP53_chr17:g.10568428inv	yes	unknown	2979840	50408	53377	0	102
P-0075492-T01-IM7	SOMATIC	TP53	TP53	17	17	5409494	7583853	Intron of NLRP1(-):4Kb before exon 16	5-UTR of TP53(-):11Kb before coding start		GRCh37	INVERSION	0	5	TP53-intragenic	IMPPRECISE	3to3	TP53 (NM_000546) rearrangement: c.-28-3913:TP53_c.4070-4302:NLRP1inv	yes	unknown	2174359	60074	75570	0	8
P-0075089-T02-IM7	SOMATIC	TP53	TP53	17	17	7574097	7582753	Intron of TP53(-):64bp before exon 10	5-UTR of TP53(-):10Kb before coding start		GRCh37	INVERSION	10	5	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.994-64:TP53_chr17:g.7582753inv	yes	unknown	8656	15239	22213	0	6
P-0077930-T01-IM7	SOMATIC	TP53	TP53	19	17	53723353	7578554	IGR: 7Kb before ZNF818P(+)	Exon 5 of TP53(-)		GRCh37	TRANSLOCATION	10	33	TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: t(17;19)(p13.1;q13.42)(chr17:g.7578554::chr19:g.53723353)	yes	unknown	0	0	0	0	33
P-0077216-T01-IM7	SOMATIC	TP53	TP53	17	17	7539928	7580883	IGR: 7Kb before SHBG(+)	5-UTR of TP53(-):8Kb before coding start		GRCh37	DELETION	10	12	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-943:TP53_chr17:539928del	yes	unknown	40955	17559	14361	0	12
P-0076092-T01-IM7	SOMATIC	TP53	TP53	17	17	7572299	7577465	3-UTR of TP53(-):627bp after coding stop	Intron of TP53(-):33bp after exon 7		GRCh37	DELETION	10	81	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.782+34:TP53_chr17:g.7572299del	yes	unknown	5166	5251	3864	0	85
P-0079739-T01-IM7	SOMATIC	TP53	TP53	17	17	6170298	7588726	IGR: 157Kb before AIPL1(-)	5-UTR of TP53(-):16Kb before coding start		GRCh37	DELETION	10	15	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement : c.-29+1969:TP53_chr17:g.6170298del	yes	unknown	1418428	70306	61266	0	15
P-0081499-T01-IM7	SOMATIC	TP53		17	6	7579444	12712993	Exon 4 of TP53(-)	IGR: 4Kb before PHACTR1(+)		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	5to3	TP53 (NM_000546) rearrangement: t(6;17)(p24.1;p13.1)(chr6:g.12712993::chr17:g.7579444)			0	0	0	0	51
P-0080005-T01-IM7	SOMATIC	TP53		17	17	7578270	7953909	Exon 6 of TP53(-)	Promoter of ALOX15B(+):12Kb from tx start		GRCh37	DELETION	10	77	TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.579:TP53_chr17:g.7953909del	yes	unknown	375639	34834	25636	0	81
P-0002304-T01-IM3	SOMATIC	TP53		17	17	7541002	7579659	IGR: 8Kb before SHBG(+)	Intron of TP53(-): 41bp after exon 3		GRCh37	DELETION			TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) Deletion : g.7541002_c.96+41del			38657	22073	12098	0	35
P-0009702-T01-IM5	SOMATIC	TP53		17	2	7578268	162135135	Exon 6 of TP53(-)	IGR: 30Kb before PSMD14(+)		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) Rearrangement :t(2;17)(q24.2;p13.1)(chr2:g.162135135::chr17:g.7578268)			0	0	0	0	15
P-0009786-T01-IM5	SOMATIC	TP53		17	2	7576603	155642294	Intron of TP53(-): 19bp before exon 6	Intron of KCNJ3(+): 69Kb before exon 3		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) Rearrangement :  t(2;17)(q24.1;p13.1)(chr2:g.155642294::chr17:g. 7576603 )			0	0	0	0	52
P-0015479-T01-IM6	SOMATIC	TP53		17	17	7576610	62224960	Intron of TP53(-): 26bp before exon 6	3-UTR of TEX2(-): 1Kb after coding stop		GRCh37	INVERSION			TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.993+243_chr17:g.62224960inv			54648350	617121	613849	0	7
P-0023404-T01-IM6	SOMATIC	TP53		22	17	50604157	7576891	IGR: 5Kb before PANX2(+)	Exon 9 of TP53(-)		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(17;22)(p13.1;q13.33)(chr17:g.7576891::chr22:g.50604157)			0	0	0	0	15
P-0030109-T01-IM6	SOMATIC	TP53		17	17	3605902	7579246	IGR: 12Kb before ITGAE(-)	Intron of TP53(-):65bp after exon 4		GRCh37	DELETION			TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.375+66:TP53_chr17:g.3605902del			3973344	24419	20872	0	29
P-0033226-T01-IM6	SOMATIC	TP53		17	17	7578324	75261748	Intron of TP53(-):35bp before exon 6	IGR: 16Kb before SEPT9(+)		GRCh37	INVERSION			TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) Rearrangement : chr17:g.75261748_c.560-35inv			67683424	820163	389052	0	29
P-0081761-T02-IM7	SOMATIC	TP53		17	17	7571891	7590860	3-UTR of TP53(-):1Kb after coding stop	5-UTR of TP53(-):18Kb before coding start		GRCh37	DELETION			TP53-intragenic	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.*1036G_c.-194Gdel			18969	46088	14075	0	6
P-0084037-T01-IM7	SOMATIC	TP53		17	6	7586173	141203465	5-UTR of TP53(-):13Kb before coding start	IGR: 199Kb before MIR4465(+)		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: t(6;17)(q24.1;p13.1)(chr6:g.141203465::chr17:g.7586173)			0	0	0	0	36
P-0085275-T01-IM7	SOMATIC	TP53		17	17	7576448	7577694	Intron of TP53(-):404bp after exon 9	Intron of TP53(-):86bp before exon 7		GRCh37	INVERSION			TP53-intragenic	PRECISE	3to3	TP53 (NM_000546) rearrangement: c.673-86_c.993+405inv			1246	4017	6185	0	2
P-0088623-T01-IM7	SOMATIC	TP53		X	17	87307408	7580245	IGR: 535Kb before KLHL4(+)	5-UTR of TP53(-):7Kb before coding start		GRCh37	TRANSLOCATION			TP53-intragenic	PRECISE	3to3	TP53 (NM000546) rearrangement: t(X;17)(q21.31,q13.1)(chrX:g.87307408::chr17:g.7580245)			0	0	0	0	28
P-0085318-T02-IM7	SOMATIC	TP53		17	17	7577370	35162125	Intron of TP53(-):128bp after exon 7	IGR: 133Kb before LHX1(+)		GRCh37	INVERSION			TP53-intragenic	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.782+129:TP53_chr17:g.35162125inv			27584755	507711	580366	0	35
P-0073996-T01-IM7	SOMATIC	TP53	ACADVL	17	17	7125711	7583609	Intron of ACADVL(+):90bp after exon 9	5-UTR of TP53(-):11Kb before coding start		GRCh37	INVERSION	10	10	Transcript Fusion {ACADVL:TP53}	PRECISE	3to3	TP53 (NM_000546) - ACADVL (NM_000018) rearrangement: c.878+90:ACADVL_c.-28-3669:TP53inv	yes	unknown	457898	41457	43144	0	10
P-0077973-T01-IM7	SOMATIC	TP53	DNAH2	17	17	7587783	7650824	5-UTR of TP53(-):15Kb before coding start	Intron of DNAH2(+):4Kb after exon 11		GRCh37	INVERSION	5	4	Transcript Fusion {DNAH2:TP53}	PRECISE	3to3	TP53 (NM_000546) rearrangement: chr17:g.7650824_c.-29+2912:TP53inv	yes	unknown	63041	11867	6532	0	4
P-0052869-T01-IM6	SOMATIC	TP53	ELOVL5	17	6	7574171	53161654	Intron of TP53(-):138bp before exon 10	5-UTR of ELOVL5(-):3Kb before coding start		GRCh37	TRANSLOCATION	10	7	Transcript Fusion {ELOVL5:TP53}	PRECISE	3to5	TP53 (NM_000546) rearrangement: t(6;17)(p12.1;p13.1)(chr6:g.53161654::chr17:g.7574171)	yes	unknown	0	0	0	0	7
P-0086870-T01-IM7	SOMATIC	TP53		17	4	7587368	81197374	5-UTR of TP53(-):14Kb before coding start	Intron of FGF5(+):1Kb after exon 2		GRCh37	TRANSLOCATION			Transcript Fusion {FGF5:TP53}	PRECISE	3to3	TP53 (NM_000546) rearrangement: t(4;17)(q21.21;p13.1)(chr4:g.81197374:chr17:7587368)			0	0	0	0	13
P-0054972-T01-IM6	SOMATIC	TP53	TP53	17	17	7168876	7576814	Promoter of CLDN7(-):6Kb from tx start	Intron of TP53(-):38bp after exon 9		GRCh37	DELETION	8	2	Transcript Fusion {TP53:CLDN7}	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.993+39:TP53_chr17:g.7168876del	yes	unknown	407938	15052	17049	0	3
P-0084999-T01-IM7	SOMATIC	TP53		19	17	1079239	7587566	Intron of HMHA1(+):462bp before exon 11	5-UTR of TP53(-):15Kb before coding start		GRCh37	TRANSLOCATION			Transcript Fusion {TP53:HMHA1}	PRECISE	5to5	TP53 (NM_000546) rearrangement: t(17;19)(p13.1;q13.3)(chr17:g.7587566::chr19:1079239)			0	0	0	0	15
P-0070375-T01-IM7	SOMATIC	TP53	NPEPPS	17	17	7587950	45678738	5-UTR of TP53(-):15Kb before coding start	Intron of NPEPPS(+):235bp before exon 15		GRCh37	INVERSION	10	53	Transcript Fusion {TP53:NPEPPS}	PRECISE	5to5	TP53 (NM_000546) rearrangement: c.-29+2745_chr17:g.45678738inv	yes	unknown	38090788	898983	854820	0	63
P-0076387-T01-IM7	SOMATIC	TP53	TP53	17	17	7530674	7581261	Intron of SAT2(-):6bp after exon 2	5-UTR of TP53(-):8Kb before coding start		GRCh37	DELETION	10	8	Transcript Fusion {TP53:SAT2}	PRECISE	3to5	TP53 (NM_000546) rearrangement: c.-28-1321:TP53_chr17:g.7530674del	yes	unknown	50587	22281	16655	0	10
P-0025024-T01-IM6	SOMATIC	TP53BP1		15	15	43701119	44950938	Exon 26 of TP53BP1(-)	Intron of SPG11(-):338bp after exon 3		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	TP53BP1 (NM_001141980) rearrangement: c.5576:TP53BP1_chr15:g.44950938inv			1249819	33951	66505	0	16
P-0078334-T01-IM7	SOMATIC	TP53BP1	TP53BP1	15	15	43731411	43733733	Intron of TP53BP1(-):797bp before exon 16	Exon 15 of TP53BP1(-)		GRCh37	DELETION	10	36	Deletion within transcript : mid-exon	PRECISE	3to5	TP53BP1 (NM_001141980) rearrangement: c.3089_c.3099-797del	yes	unknown	2322	422	177	0	36
P-0032500-T01-IM6	SOMATIC	TP53BP1		15	15	43772881	43778152	Intron of TP53BP1(-):211bp after exon 5	Intron of TP53BP1(-):5Kb before exon 5		GRCh37	DUPLICATION			Duplication of 1 exon : out of frame	PRECISE	5to3	TP53BP1 (NM_001141980) Rearrangement : c.141-38_c.499+212del			5271	2158	2561	0	13
P-0040894-T01-IM6	SOMATIC	TP53BP1	PPIP5K1	15	15	43784112	43833910	Intron of TP53BP1(-):87bp after exon 3	Intron of PPIP5K1(-):2Kb before exon 28		GRCh37	DUPLICATION	10	17	Protein Fusion: in frame  {TP53BP1:PPIP5K1}	PRECISE	5to3	TP53BP1 (NM_001141980) - PPIP5K1 (NM_014659) rearrangement: c.286+88:TP53BP1_c.3311-2129:PPIP5K1dup	yes	unknown	49798	3035	3786	0	18
P-0017031-T01-IM6	SOMATIC	TP53BP1	WDR72	15	15	43767945	53843592	Intron of TP53BP1(-):53bp before exon 9	Intron of WDR72(-):28Kb before exon 19		GRCh37	DELETION	10	3	Protein Fusion: in frame  {WDR72:TP53BP1}	PRECISE	3to5	WDR72 (NM_182758) - TP53BP1 (NM_001141980) rearrangement: c.3149-28073:WDR72_c.956-53:TP53BP1del	yes	unknown	10075647	20397	40492	0	3
P-0071584-T02-IM7	SOMATIC	TP53BP1	TUBGCP4	15	15	43685408	43713267	Intron of TUBGCP4(+):2Kb before exon 10	Exon 20 of TP53BP1(-)		GRCh37	INVERSION	10	45	Protein Fusion: mid-exon  {TP53BP1:TUBGCP4}	PRECISE	5to5	TP53BP1 (NM_001141980) - TUBGCP4 (NM_014444) rearrangement: c.4206:TP53BP1_c.1015-1897:TUBGCP4inv	yes	unknown	27859	12318	23324	0	55
P-0058318-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43609857	43748359	IGR: 10Kb before LCMT2(-)	Exon 12 of TP53BP1(-)		GRCh37	DELETION	0	5	TP53BP1-intragenic	IMPPRECISE	3to5	TP53BP1 (NM_001141980) rearrangement: c.2447:TP53BP1_chr15:g.43609857del	yes	unknown	138502	43531	51036	0	5
P-0037760-T01-IM6	SOMATIC	TP53BP1	RNU6-28P	15	15	43785386	43810133	Promoter of TP53BP1(-):86Kb from tx start	5-UTR of RNU6-28P(+):85Kb before coding start		GRCh37	DELETION	0	9	TP53BP1-intragenic	IMPPRECISE	3to5	TP53BP1(NM_001141980) Rearrangement: c.-145:TP53BP1_chr15:g.43810133	yes	unknown	24747	179	260	0	9
P-0067297-T01-IM7	SOMATIC	TP53BP1	TP53BP1	16	15	32548331	43783909	IGR: 137Kb before TP53TG3(-)	Exon 4 of TP53BP1(-)		GRCh37	TRANSLOCATION	10	10	TP53BP1-intragenic	PRECISE	5to3	TP53BP1 (NM_001141980) rearrangement: t(15;16)(q15.3;p11.2)(chr15:g.43783909::chr16:g.32548331)	yes	unknown	0	0	0	0	10
P-0036170-T01-IM6	SOMATIC	TP53BP1		18	15	44342571	43738717	IGR: 47Kb before PIAS2(-)	Exon 14 of TP53BP1(-)		GRCh37	TRANSLOCATION			TP53BP1-intragenic	PRECISE	5to3	TP53BP1 (NM_001141980) rearrangement: t(15;18)(q15.3;q21.1)(chr15:g.43738717::chr18:g.44342571)			0	0	0	0	6
P-0014583-T01-IM6	SOMATIC	TP63		3	3	189608694	189612106	Intron of TP63(+): 23bp after exon 13	Exon 14 of TP63(+)		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	TP63 (NM_003722) rearrangement: c.1746+23_c.1858del			3412	1447	1080	0	56
P-0035031-T01-IM6	SOMATIC	TP63		3	3	189483203	189526294	Intron of TP63(+):27Kb after exon 3	Exon 4 of TP63(+)		GRCh37	DUPLICATION			Duplication within transcript : mid-exon	PRECISE	5to3	TP63 (NM_003722) Rearrangement : c.324+26640_c.558dup			43091	2568	3017	0	3
P-0009647-T01-IM5	SOMATIC	TP63	LEPREL1	3	3	189456639	189799964	Intron of TP63(+): 76bp after exon 3	Intron of LEPREL1(-): 38Kb after exon 1		GRCh37	INVERSION	0	13	Protein fusion: in frame (TP63-LEPREL1)	IMPRECISE	3to3	TP63 (NM_003722) - LEPREL1 (NM_018192) rearrangement: c.324+76:TP63_c.480+38077:LEPREL1inv	yes	unknown	343325	29302	36802	0	10
P-0049520-T01-IM6	SOMATIC	TP63	OSTN	3	3	189455554	190865940	Exon 2 of TP63(+)	IGR: 64Kb before OSTN(+)		GRCh37	DELETION	7	7	TP63-intragenic	PRECISE	3to5	TP63 (NM_003722) rearrangement: c.88:TP63_chr3:g.190865940del	yes	unknown	1410386	19248	29441	0	7
P-0052369-T02-IM6	SOMATIC	TP63	TP63	3	3	185353883	189585723	IGR: 8Kb before IGF2BP2(-)	Exon 7 of TP63(+)		GRCh37	DELETION	9	5	TP63-intragenic	PRECISE	3to5	TP63 (NM_003722) rearrangement: c.984:TP63_chr3:g.185353883del	yes	unknown	4231840	43536	51572	0	7
P-0039702-T01-IM6	SOMATIC	TP63	TP63	17	3	76788637	189586502	IGR: 4Kb before USP36(-)	Exon 8 of TP63(+)		GRCh37	TRANSLOCATION	10	5	TP63-intragenic	PRECISE	5to3	TP63 (NM_003722) rearrangement: t(3;17)(q28;q25.3)(chr3:g.189586502::chr17:g.76788637)	yes	unknown	0	0	0	0	6
P-0030872-T01-IM6	SOMATIC	TSPAN4	TMPRSS2	21	11	42867997	865773	Intron of TMPRSS2(-):1Kb before exon 3	Exon 7 of TSPAN4(+)		GRCh37	TRANSLOCATION			Protein Fusion: mid-exon  {TSPAN4:TMPRSS2}	PRECISE	3to3	TPAN4 (NM_001025238) - TMPRSS2 (NM_001135099) rearrangement: t(11;21)(p15.5;q22.3)(chr11:g.:865773::chr21:g.42867997)			0	0	0	0	16
P-0032514-T01-IM6	SOMATIC	TPM1	ALK								GRCh37				TPM1-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TPM1-ALK fusion. Note: The rearrangement is an in-frame fusion between genes TPM1 Exon2 (NM_001018020) and ALK Exon20 (NM_004304).	yes	unknown					
P-0074933-T01-IM7	SOMATIC	TPM3	NTRK1	1	1	154136917	156844882	Intron of TPM3(-):6Kb after exon 6	Intron of NTRK1(+):82bp after exon 11		GRCh37	INVERSION	10	30	Protein Fusion: in frame  {TPM3:NTRK1}	PRECISE	5to5	TPM3 (NM_001278190) - NTRK1 (NM_002529) fusion: c.601+5959:TPM3_c.1354+82:NTRK1inv	yes	unknown	2707965	78096	64223	0	35
P-0072069-T01-IM7	SOMATIC	TPM3	ROS1	6	1	117647029	154130457	Intron of ROS1(-):357bp after exon 33	Intron of TPM3(-):260bp before exon 7		GRCh37	TRANSLOCATION	10	35	Protein Fusion: in frame  {TPM3:ROS1}	PRECISE	3to5	TPM3 (NM_001278191) - ROS1 (NM_002944) fusion: t(1;6)(q21.3;q22.1)(chr1:g.154130457::chr6:g.117647029)	yes	unknown	0	0	0	0	35
P-0054381-T02-IM7	SOMATIC	TPM3	NTRK1								GRCh37				TPM3-NTRK1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TPM3-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes TPM3 Exon7 (NM_153649) and NTRK1 Exon12 (NM_002529).	yes	unknown					
P-0072069-T01-IM7	SOMATIC	TPM3	ROS1								GRCh37				TPM3-ROS1 Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TPM3-ROS1 fusion. Note: The rearrangement is an in-frame fusion between genes TPM3 Exon8 (NM_152263) and ROS1 Exon34 (NM_002944).	yes	unknown					
P-0011157-T01-IM5	SOMATIC	TPPP	TERT	5	5	682643	1293416	5-UTR of TPPP(-): 4Kb before coding start	Intron of TERT(-): 12bp after exon 2		GRCh37	DELETION	10	8	Transcript fusion (TERT-TPPP)	PRECISE	3to5	TERT (NM_198253) rearrangement: c.1573+12:TERT_chr5:g.682643del	yes	unknown	610773	33883	33398	0	8
P-0065034-T02-IM7	SOMATIC	TPR	NTRK1	1	1	156843651	186317102	Exon 8 of NTRK1(+)	Intron of TPR(-):512bp before exon 22		GRCh37	INVERSION	10	26	Protein Fusion: mid-exon  {TPR:NTRK1}	PRECISE	5to5	TPR (NM_003292) - NTRK1 (NM_002529) fusion: c.2777-512:TPR_c.1077:NTRK1inv	yes	unknown	29473451	170752	286248	0	38
P-0065034-T02-IM7	SOMATIC	TPR	NTRK1								GRCh37				TPR-NTRK1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TPR-NTRK1 fusion. Note: The rearrangement is an in-frame fusion between genes TPR Exon21 (NM_003292) and NTRK1 Exon10 (NM_002529).	yes	unknown					
P-0043836-T01-IM6	SOMATIC	TRA2B	BRAF	7	3	140491978	185650761	Intron of BRAF(-):2Kb after exon 8	Intron of TRA2B(-):5Kb after exon 1		GRCh37	TRANSLOCATION	10	22	Protein Fusion: in frame  {TRA2B:BRAF}	PRECISE	3to5	TRA2B (NM_004593) - BRAF (NM_004333) fusion: t(3;7)(q27.2;q34)(chr3:g.185650761::chr7:g.140491978)	yes	unknown	0	0	0	0	20
P-0043836-T01-IM6	SOMATIC	TRA2B	BRAF								GRCh37				TRA2B-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: TRA2B-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes TRA2B Exon1 (NM_004593) and BRAF Exon9 (NM_004333).	yes	unknown					
P-0049596-T01-IM6	SOMATIC	TRAF2		9	9	139815624	139938255	Exon 9 of TRAF2(+)	Intron of NPDC1(-):730bp before exon 2		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	TRAF2 (NM_021138) rearrangement: c.1095:TRAF2_chr9:g.139938255del			122631	8002	3360	2	301
P-0065195-T01-IM7	SOMATIC	TRAF2	TRAF2	9	9	139819227	139820309	Intron of TRAF2(+):775bp after exon 10	Exon 11 of TRAF2(+)		GRCh37	DELETION	10	29	Deletion within transcript : mid-exon	PRECISE	3to5	TRAF2 (NM_021138) rearrangement: c.1287+775_c.1462del	yes	unknown	1082	773	1675	0	29
P-0035991-T01-IM6	SOMATIC	TRAF2	TRAF2	9	9	139793905	139801365	Intron of TRAF2(+):140bp before exon 3	Intron of TRAF2(+):1Kb before exon 5		GRCh37	DUPLICATION	10	27	Duplication of 2 exons : out of frame	PRECISE	5to3	TRAF2 (NM_021138) rearrangement: c.189-141_c.367-1157dup	yes	unknown	7460	3995	4410	0	28
P-0070716-T01-IM7	SOMATIC	TRAF2	TRAF2	9	9	139802722	139816376	Intron of TRAF2(+):39bp after exon 5	Intron of TRAF2(+):709bp after exon 9		GRCh37	INVERSION	10	10	TRAF2-intragenic	PRECISE	5to5	TRAF2 (NM_021138) rearrangement: c.528+39_c.1138+709inv	yes	unknown	13654	7681	11703	0	12
P-0085754-T01-IM7	SOMATIC	TRAF2		9	9	139772786	139795086	IGR: 8Kb before TRAF2(+)	Intron of TRAF2(+):114bp after exon 4		GRCh37	INVERSION			TRAF2-intragenic	PRECISE	5to5	TRAF2 (NM_021138) rearrangement: c.366+114:TRAF2_chr9:g.139772786inv			22300	4519	7827	0	16
P-0054554-T01-IM6	SOMATIC	TRAF7	NRXN1	16	2	2225963	51136872	Intron of TRAF7(+):9bp after exon 18	Intron of NRXN1(-):13Kb after exon 4		GRCh37	TRANSLOCATION	10	49	Antisense Fusion	PRECISE	3to5	TRAF7 (NM_032271) rearrangement: t(2;16)(p16.3;p13.3)(chr2:g.51136872::chr16:g.2225963)	yes	unknown	0	0	0	0	50
P-0071549-T02-IM7	SOMATIC	TRAF7	TRAF7	16	16	2215862	2217881	Intron of TRAF7(+):17bp before exon 3	Intron of TRAF7(+):196bp before exon 4		GRCh37	DELETION	10	27	Deletion of 1 exon : out of frame	PRECISE	3to5	TRAF7 (NM_032271) rearrangement: c.82-18_c.140-197del	yes	unknown	2019	556	974	0	31
P-0039223-T01-IM6	SOMATIC	TRAF7	TRAF7	20	16	40221310	2221580	5-UTR of CHD6(-):188Kb before coding start	Exon 7 of TRAF7(+)		GRCh37	TRANSLOCATION	10	14	Protein Fusion: mid-exon  {TRAF7:CHD6}	PRECISE	3to3	TRAF7 (NM_032271) rearrangement: t(16;20)(p13.3;q12)(chr16:g.2221580::chr20:g.40221310)	yes	unknown	0	0	0	0	14
P-0025810-T01-IM6	SOMATIC	TRAF7	TMEM114	16	16	2225458	8294757	Intron of TRAF7(+):40bp after exon 16	IGR: 282Kb before TMEM114(-)		GRCh37	INVERSION	10	5	TRAF7-intragenic	PRECISE	3to3	TRAF7 (NM_032271) rearrangement: c.1503+40:TRAF7_chr16:g.8294757inv	yes	unknown	6069299	84456	165381	0	5
P-0077358-T01-IM7	SOMATIC	TRAF7	ABCA3	16	16	2221550	2342858	Intron of TRAF7(+):22bp before exon 7	Intron of ABCA3(-):619bp before exon 19		GRCh37	DUPLICATION	10	7	TRAF7-intragenic	PRECISE	5to3	TRAF7 (NM_032271) rearrangement: c.442-23:TRAF7_chr16:g.2342858dup	yes	unknown	121308	20084	18210	0	7
P-0016358-T01-IM6	SOMATIC	TRAF7		16	16	2223748	30884849	Intron of TRAF7(+):40bp before exon 12	Intron of BCL7C(-):15Kb after exon 5		GRCh37	DUPLICATION			TRAF7-intragenic	PRECISE	5to3	TRAF7 (NM_032271) Rearrangement : c.1087-41:TRAF7_chr16:g.30884849dup			28661101	265954	407773	0	21
P-0040350-T03-IM6	SOMATIC	TRAF7		16	16	2225227	4374860	Intron of TRAF7(+):74bp before exon 16	3-UTR of GLIS2-AS1(-):3Kb after coding stop		GRCh37	DELETION			TRAF7-intragenic	PRECISE	3to5	TRAF7 (NM_032271) rearrangement: c.1387-75:TRAF7_chr16:g.4374860del			2149633	177555	141814	0	30
P-0031293-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3733757	3778712	Intron of TRAP1(-):2Kb after exon 3	Exon 31 of CREBBP(-)		GRCh37	DELETION	8	3	Protein Fusion: mid-exon  {CREBBP:TRAP1}	PRECISE	3to5	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.6336:CREBBP_c.471+2240:TRAP1del	yes	unknown	44955	8344	9580	0	3
P-0053969-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3755151	3807811	Intron of TRAP1(-):12Kb after exon 1	Exon 18 of CREBBP(-)		GRCh37	DUPLICATION	8	2	Protein Fusion: mid-exon  {TRAP1:CREBBP}	PRECISE	5to3	TRAP1 (NM_016292) - CREBBP (NM_004380) rearrangement: c.88+12271:TRAP1_c.3608:CREBBPdup	yes	unknown	52660	39207	72119	0	4
P-0002323-T01-IM3	SOMATIC	TRAP1	CREBBP	16	16	3736917	3779150	Intron of TRAP1(-): 780bp before exon 4	Exon 31 of CREBBP(-)		GRCh37	DUPLICATION	39	16	Protein fusion: mid-exon (TRAP1-CREBBP)	PRECISE	5to3	TRAP1 (NM_016292) and CREBBP (NM_004380) duplication (42233bp):    TRAP1:c.331-780_CREBBP:c.5898dup	yes	unknown	42233	11964	11036	0	17
P-0037339-T01-IM6	SOMATIC	TRAPPC10	ERG								GRCh37				TRAPPC10-ERG Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TRAPPC10-ERG fusion. Note: The rearrangement is a fusion between genes TRAPPC10 Exon13 (NM_003274) and ERG Exon4 (NM_004449). The functional significance of this event is unknown.	yes	unknown					
P-0059084-T01-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141183930	141561500	Intron of TRAPPC9(-):48Kb after exon 17	Exon 11 of AGO2(-)		GRCh37	DUPLICATION	10	19	Protein Fusion: mid-exon  {TRAPPC9:AGO2}	PRECISE	5to3	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.2850+47628:TRAPPC9_c.1305:AGO2dup	yes	unknown	377570	15040	46538	0	18
P-0019967-T01-IM6	SOMATIC	TRAPPC9	AGO2	8	8	140948477	141542713	Intron of TRAPPC9(-):26Kb before exon 20	Exon 18 of AGO2(-)		GRCh37	DUPLICATION			Protein Fusion: mid-exon  {TRAPPC9:AGO2}	PRECISE	5to3	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.3105-25933:TRAPPC9_c.2273:AGO2dup			594236	4678	7137	0	5
P-0032569-T01-IM6	SOMATIC	TRIM24	BRAF	7	7	138256539	140487936	Intron of TRIM24(+):791bp after exon 11	Intron of BRAF(-):552bp before exon 9		GRCh37	INVERSION	10	57	Protein Fusion: in frame  {TRIM24:BRAF}	PRECISE	3to3	TRIM24 (NM_015905) - BRAF (NM_004333) Rearrangement : c.1878+791:TRIM24_c.1141-552inv	yes	unknown	2231397	41645	45976	0	55
P-0045111-T01-IM6	SOMATIC	TRIM24	BRAF	7	7	138263189	140488049	Intron of TRIM24(+):759bp before exon 15	Intron of BRAF(-):665bp before exon 9		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {TRIM24:BRAF}	PRECISE	3to3	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.2257-760:TRIM24_c.1141-665:BRAFinv	yes	unknown	2224860	51713	48667	0	24
P-0066835-T01-IM7	SOMATIC	TRIM24	BRAF	7	7	138257750	140490589	Intron of TRIM24(+):501bp before exon 12	Intron of BRAF(-):3Kb before exon 9		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {TRIM24:BRAF}	PRECISE	3to3	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.1879-502:TRIM24_c.1141-3205:BRAFinv	yes	unknown	2232839	56865	58671	0	24
P-0069867-T01-IM7	SOMATIC	TRIM24	BRAF	7	7	138203731	140486553	Intron of TRIM24(+):202bp before exon 4	Intron of BRAF(-):794bp after exon 9		GRCh37	INVERSION	10	24	Protein Fusion: in frame  {TRIM24:BRAF}	PRECISE	3to3	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.632-203:TRIM24_c.1177+795:BRAFinv	yes	unknown	2282822	34695	64877	0	24
P-0068155-T02-IM7	SOMATIC	TRIM24	ALK								GRCh37				TRIM24-ALK Fusion - Archer			POSITIVE FOR THE FOLLOWING GENE FUSION IN THE CLINICALLY VALIDATED PANEL: TRIM24-ALK fusion. Note: The rearrangement is an in-frame fusion between genes TRIM24 Exon12 (NM_003852) and ALK Exon20 (NM_004304). Note1: The fusion includes the kinase domain of ALK.	yes	unknown					
P-0031439-T01-IM6	SOMATIC	TRIM33	CSDE1	1	1	114975180	115273042	Intron of TRIM33(-):1Kb after exon 5	Exon 13 of CSDE1(-)		GRCh37	DUPLICATION	10	20	Protein Fusion: mid-exon  {TRIM33:CSDE1}	PRECISE	5to3	TRIM33 (NM_015906) - CSDE1(NM_001130523.2): Rearrangement: c.1040+1059:TRIM33_c.1238:CSDE1dup	yes	unknown	297862	16441	26339	0	35
P-0029948-T01-IM6	SOMATIC	TRIM33	NUF2	1	1	114969117	163310171	Intron of TRIM33(-):681bp after exon 8	Exon 9 of NUF2(+)		GRCh37	INVERSION	10	38	Protein Fusion: mid-exon  {TRIM33:NUF2}	PRECISE	5to5	TRIM33 (NM_015906) - NUF2 (NM_031423) rearrangement: c.1420+682:TRIM33_c.624:NUF2inv	yes	unknown	48341054	258820	280919	0	39
P-0076764-T02-IM7	SOMATIC	TRIP13	CLPTM1L	5	5	900847	1342583	Intron of TRIP13(+):183bp after exon 4	Intron of CLPTM1L(-):608bp before exon 3		GRCh37	INVERSION	10	28	Protein Fusion: out of frame  {TRIP13:CLPTM1L}	PRECISE	3to3	TRIP13 (NM_004237) rearrangement: c.444+183_g.1342583inv	yes	unknown	441736	69991	146915	0	28
P-0063713-T01-IM7	SOMATIC	TRIP13	TRIP13	5	5	893229	895749	Intron of TRIP13(+):24bp after exon 1	Intron of TRIP13(+):682bp after exon 2		GRCh37	INVERSION	10	15	TRIP13-intragenic	PRECISE	5to5	TRIP13 (NM_004237) rearrangement: c.92+24_c.258+682inv	yes	unknown	2520	1534	1738	0	16
P-0036885-T01-IM6	SOMATIC	TRMT1	BRD4	19	19	13217717	15349291	Intron of TRMT1(-):670bp after exon 12	Intron of BRD4(-):35bp before exon 20		GRCh37	DUPLICATION	10	2	Protein Fusion: out of frame  {TRMT1:BRD4}	PRECISE	5to3	TRMT1 (NM_001136035) - BRD4 (NM_058243) rearrangement: c.1583+671_c.4021-35dup	yes	unknown	2131574	102895	62948	0	18
P-0048251-T01-IM6	SOMATIC	TRMT1L	FH	1	1	185113306	241663571	Intron of TRMT1L(-):145bp before exon 6	Intron of FH(-):165bp after exon 9		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	FH (NM_000143) rearrangement: c.1390+166:FH_chr1:g.185113306inv			56550265	174968	271655	0	18
P-0008945-T01-IM5	SOMATIC	TRPC6	YAP1	11	11	101401349	102033282	Intron of TRPC6(-): 26Kb before exon 2	Exon 3 of YAP1(+)		GRCh37	INVERSION	61	53	Protein fusion: mid-exon (YAP1-TRPC6)	PRECISE	3to3	YAP1 (NM_001130145) - TRPC6 (NM_004621) Rearrangement :  c.668:YAP1_c.171-25820:TRPC6inv	yes	unknown	631933	5140	3758	0	52
P-0013299-T01-IM5	SOMATIC	TSC1	COL5A1	9	9	135804243	137690051	Exon 3 of TSC1(-)	Intron of COL5A1(+): 203bp before exon 37		GRCh37	DELETION	46	54	COL5A1-TSC1 fusion	PRECISE	3to5	TSC1 (NM_000368) - COL5A1 (NM_000093) rearrangement: c.17:TSC1_c.2899-203:COL5A1del	yes	unknown	1885808	3619	3238	0	53
P-0039226-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135784269	135786290	Intron of TSC1(-):2Kb before exon 13	Intron of TSC1(-):98bp after exon 11		GRCh37	DELETION	10	35	Deletion of 1 exon : out of frame	PRECISE	3to5	TSC1 (NM_000368) rearrangement: c.1141+99_c.1264-1512del	yes	unknown	2021	2385	1258	0	35
P-0063043-T01-IM7	SOMATIC	TSC1	TSC1	9	9	135783479	135786330	Intron of TSC1(-):722bp before exon 13	Intron of TSC1(-):58bp after exon 11		GRCh37	DUPLICATION	9	3	Duplication of 1 exon : out of frame	PRECISE	5to3	TSC1 (NM_000368) rearrangement: c.1141+59_c.1264-722dup	yes	unknown	2851	2217	8034	0	3
P-0087951-T01-IM7	SOMATIC	TSC1	SWI5	9	9	131044070	135785768	Intron of SWI5(+):3Kb before exon 3	Intron of TSC1(-):189bp after exon 12		GRCh37	INVERSION			Protein Fusion: in frame  {TSC1:SWI5}	PRECISE	5to5	TSC1 (NM_000368) - SWI5 (NM_001040011) rearrangement: c.1263+190:TSC1_c.427-2719:SWI5inv			4741698	59309	94301	0	6
P-0048041-T01-IM6	SOMATIC	TSC1	AK8	9	9	135684743	135772792	Intron of AK8(-):5Kb after exon 10	Intron of TSC1(-):17bp after exon 21		GRCh37	DELETION	10	22	Protein Fusion: out of frame  {TSC1:AK8}	PRECISE	3to5	TSC1 (NM_000368) - AK8 (NM_152572) rearrangement: c.2813+18:TSC1_c.979+5282:AK8del	yes	unknown	88049	4075	4288	0	22
P-0059163-T01-IM7	SOMATIC	TSC1	PPAP2B	9	1	135779292	56602679	Intron of TSC1(-):88bp before exon 17	IGR: 358Kb before PPAP2B(-)		GRCh37	TRANSLOCATION	10	46	TSC1-intragenic	PRECISE	3to3	TSC1 (NM_000368) rearrangement: t(1;9)(p32.2;q34.13)(chr1:g.56602679::chr9:g.135779292)	yes	unknown	0	0	0	0	34
P-0010071-T01-IM5	SOMATIC	TSC1		9	9	78358260	135781001	IGR: 20Kb after MIR548H3(-)	Exon 15 of TSC1(-)		GRCh37	INVERSION			TSC1-intragenic	PRECISE	3to3	TSC1 (NM_000368) Rearrangement :  chr9:g.78358260_c.1964:TSC1inv			57422741	303752	296453	0	15
P-0067352-T01-IM7	SOMATIC	TSC1		9	9	95901371	135781379	IGR: 18Kb before NINJ1(-)	Exon 15 of TSC1(-)		GRCh37	INVERSION			TSC1-intragenic	PRECISE	3to3	TSC1 (NM_000368) rearrangement: c.1586:TSC1_chr9:g.95901371inv			39880008	391887	392002	0	53
P-0052092-T01-IM6	SOMATIC	TSC2	PKD1	16	16	2135325	2143167	Intron of TSC2(+):2bp after exon 36	Intron of PKD1(-):73bp before exon 38		GRCh37	DELETION	10	35	Antisense Fusion	PRECISE	3to5	TSC2 (NM_000548) rearrangement: c.4662+2:TSC2_chr16:g.2143167del	yes	unknown	7842	15179	18634	0	36
P-0023771-T01-IM6	SOMATIC	TSC2		16	16	2111895	11886752	Exon 12 of TSC2(+)	5-UTR of ZC3H7A(-):42Kb before coding start		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	TSC2 (NM_000548) rearrangement: c.1143_chr16:g.11886752del			9774857	202985	335863	0	33
P-0041623-T01-IM6	SOMATIC	TSC2		16	4	2126001	99223910	Intron of TSC2(+):67bp before exon 24	Intron of RAP1GDS1(+):9Kb after exon 2		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	3to3	TSC2 (NM_000548) rearrangement: t(4;16)(q23;p13.3)(chr4:g.99223910::chr16:g.2126001)			0	0	0	0	11
P-0056854-T01-IM6	SOMATIC	TSC2		16	16	2113152	2116756	Intron of TSC2(+):98bp after exon 14	Intron of TSC2(+):1Kb after exon 16		GRCh37	DELETION			Deletion of 2 exons : in frame	IMPPRECISE	3to5	TSC2 (NM_000548) rearrangement: c.1443+98_c.1716+1120del			3604	7257	3341	0	7
P-0038811-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2116747	2129569	Intron of TSC2(+):1Kb after exon 16	Exon 29 of TSC2(+)		GRCh37	DELETION	9	6	Deletion within transcript : mid-exon	PRECISE	3to5	TSC2 (NM_000548) Rearrangement : c.1716+1111_c.3296del	yes	unknown	12822	23695	20644	0	6
P-0004967-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2125903	2127674	Intron of TSC2(+): 10bp after exon 23	Exon 26 of TSC2(+)		GRCh37	DELETION	143	102	Deletion within transcript: mid-exon	PRECISE	3to5	TSC2 (NM_000548) rearrangement : c.2639+10_2913del	yes	unknown	1771	6443	4119	0	154
P-0062530-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2132380	2136575	Intron of TSC2(+):56bp before exon 32	Intron of TSC2(+):157bp before exon 38		GRCh37	DUPLICATION	10	18	Duplication of 6 exons : in frame	PRECISE	5to3	TSC2 (NM_000548) rearrangement: c.3815-57_c.4850-158dup	yes	unknown	4195	17158	28736	0	20
P-0053065-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2103369	2110815	Exon 4 of TSC2(+)	Intron of TSC2(+):1bp after exon 11		GRCh37	DUPLICATION	10	56	Duplication within transcript : mid-exon	PRECISE	5to3	TSC2 (NM_000548) rearrangement: c.252_c.1119+1dup	yes	unknown	7446	14556	21276	0	57
P-0037474-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2121556	2131830	Exon 18 of TSC2(+)	Intron of TSC2(+):31bp after exon 31		GRCh37	DUPLICATION	10	186	Duplication within transcript : mid-exon	PRECISE	5to3	TSC2 (NM_000548) Rearrangement : c.1885_c.3814+31dup	yes	unknown	10274	35837	39022	0	208
P-0058815-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2126675	2131648	Intron of TSC2(+):89bp after exon 25	Exon 31 of TSC2(+)		GRCh37	DUPLICATION	10	21	Duplication within transcript : mid-exon	PRECISE	5to3	TSC2 (NM_000548) rearrangement: c.2837+89_c.3663dup	yes	unknown	4973	13334	15760	0	21
P-0080166-T01-IM7	SOMATIC	TSC2	PKD1	16	16	2129461	2146636	Intron of TSC2(+):32bp after exon 28	Intron of PKD1(-):512bp after exon 34		GRCh37	INVERSION	10	49	Protein Fusion: in frame  {TSC2:PKD1}	PRECISE	3to3	TSC2 (NM_000548) - PKD1 (NM_001009944) rearrangement: c.3284+32:TSC2_c.10499+513:PKD1inv	yes	unknown	17175	22067	31059	0	49
P-0031712-T01-IM6	SOMATIC	TSC2	RNPS1	16	16	2130400	2311390	Intron of TSC2(+):22bp after exon 30	Intron of RNPS1(-):888bp after exon 6		GRCh37	INVERSION	10	19	Protein Fusion: in frame  {TSC2:RNPS1}	PRECISE	3to3	TSC2 (NM_000548) - RNPS1 (NM_006711) Rearrangement : c.3610+22:TSC2_c.676+889:RNPS1inv	yes	unknown	180990	55637	68544	0	19
P-0017476-T01-IM6	SOMATIC	TSC2	CERS5	16	12	2136162	50529417	Intron of TSC2(+):31bp before exon 37	Intron of CERS5(-):97bp after exon 8		GRCh37	TRANSLOCATION	10	5	Protein Fusion: out of frame  {CERS5:TSC2}	PRECISE	5to5	CERS5 (NM_147190) - TSC2 (NM_000548) Rearrangement :  t(12,16)(q13.12,p13.3)(chr12:g.131062050::chr16:g.143130066)	yes	unknown	0	0	0	0	5
P-0074840-T01-IM7	SOMATIC	TSC2	TSC2	21	16	35554185	2130113	5-UTR of LINC00310(+):8Kb before coding start	Intron of TSC2(+):52bp before exon 30		GRCh37	TRANSLOCATION	10	114	Transcript Fusion {LINC00310:TSC2}	PRECISE	3to5	TSC2 (NM_000548) rearrangement: t(16;21)(p13.3;q22.11)(chr16:g.2130113::chr21:g.35554185)	yes	unknown	0	0	0	0	120
P-0004454-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2088970	2127535	3-UTR of SLC9A3R2(+): 985bp after coding stop	Intron of TSC2(+): 64bp before exon 26		GRCh37	DELETION	8	8	TSC2-intragenic	PRECISE	3to5	TSC2 (NM_000548) rearrangement : chr16:g.2088970_c.2838-64:TSC2del	yes	unknown	38565	30643	26528	0	8
P-0045042-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2052248	2121451	Exon 7 of ZNF598(-)	Intron of TSC2(+):59bp before exon 18		GRCh37	DELETION	5	6	TSC2-intragenic	PRECISE	3to5	TSC2 (NM_000548) rearrangement: c.1840-60:TSC2_chr16:g.2052248del	yes	unknown	69203	34979	18780	0	7
P-0067938-T01-IM7	SOMATIC	TSC2	TSC2	19	16	32630405	2120637	IGR: 37Kb before LOC101927411(-)	Intron of TSC2(+):58bp after exon 17		GRCh37	TRANSLOCATION	10	11	TSC2-intragenic	PRECISE	5to3	TSC2 (NM_000548) rearrangement: t(16;19)(p13.3;q13.11)(chr16:g.2120637::chr19:g.32630405)	yes	unknown	0	0	0	0	11
P-0070083-T01-IM7	SOMATIC	TSC2	TSC2	16	16	1102026	2100404	IGR: 12Kb before SSTR5-AS1(-)	Exon 3 of TSC2(+)		GRCh37	INVERSION	10	49	TSC2-intragenic	PRECISE	5to5	TSC2 (NM_000548) rearrangement: c.142:TSC2_chr16:g.1102026inv	yes	unknown	998378	13540	54412	0	117
P-0070425-T01-IM7	SOMATIC	TSC2	EIF3IP1	16	7	2114361	109895715	Exon 15 of TSC2(+)	IGR: 296Kb before EIF3IP1(-)		GRCh37	TRANSLOCATION	10	10	TSC2-intragenic	PRECISE	5to3	TSC2 (NM_000548) rearrangement: t(7;16)(q31.1;p13.3)(chr7:g.109895715::chr16:g.2114361)	yes	unknown	0	0	0	0	10
P-0072421-T02-IM7	SOMATIC	TSC2	TSC2	X	16	40909087	2136960	IGR: 36Kb before USP9X(+)	Intron of TSC2(+):88bp after exon 38		GRCh37	TRANSLOCATION	4	5	TSC2-intragenic	PRECISE	3to3	TSC2 (NM_000548) rearrangement: t(16;X)(p13.3;p11.4)(chr16:g.2136960::chrX:g.40909087)	yes	unknown	0	0	0	0	5
P-0079644-T01-IM7	SOMATIC	TSC2	GABRB2	16	5	2110610	160606354	Intron of TSC2(+):60bp before exon 11	IGR: 109Kb before GABRB2(-)		GRCh37	TRANSLOCATION	0	32	TSC2-intragenic	IMPPRECISE	5to5	TSC2 (NM_000548) rearrangement: t(5;16)(q34;p13.3)(chr5:g.160606354::chr16:g.2110610)	yes	unknown	0	0	0	0	38
P-0067395-T01-IM7	SOMATIC	TSC2		20	16	30314317	2115526	IGR: 13Kb before TPX2(+)	Exon 16 of TSC2(+)		GRCh37	TRANSLOCATION			TSC2-intragenic	IMPPRECISE	3to3	TSC2 (NM_000548) rearrangement: t(16;20)(p13.3;q11.21)(chr16:g.2115526::chr20:g.30314317)			0	0	0	0	5
P-0088996-T02-IM7	SOMATIC	TSC2		16	16	2066407	2131881	IGR: 3Kb before NPW(+)	Intron of TSC2(+):82bp after exon 31		GRCh37	INVERSION			TSC2-intragenic	PRECISE	3to3	TSC2 (NM_000548) rearrangement: c.3814+82:TSC2_chr16:g.2066407inv			65474	50604	145252	0	122
P-0052605-T01-IM6	SOMATIC	TSHR	TSHR	14	14	81415233	81422128	IGR: 7Kb before TSHR(+)	Exon 1 of TSHR(+)		GRCh37	INVERSION	10	106	TSHR-intragenic	PRECISE	5to5	TSHR (NM_000369) rearrangement: c.104:TSHR_chr14:g.81415233inv	yes	unknown	6895	1034	407	0	125
P-0029594-T01-IM6	SOMATIC	TSHR		14	8	81609711	72056267	Exon 10 of TSHR(+)	IGR: 53Kb before EYA1(-)		GRCh37	TRANSLOCATION			TSHR-intragenic	PRECISE	3to5	TSHR (NM_000369) rearrangement: t(8;14)(q13.3;q31.1)(chr8:g.72056267::chr14:g.81609711)			0	0	0	0	9
P-0017298-T01-IM6	SOMATIC	TSNARE1	RECQL4	8	8	143348789	145740822	Intron of TSNARE1(-):7Kb after exon 12	Exon 7 of RECQL4(-)		GRCh37	DUPLICATION	10	27	Protein Fusion: mid-exon  {TSNARE1:RECQL4}	PRECISE	5to3	TSNARE1 (NM_145003) - RECQL4 (NM_004260) rearrangement: c.1446+7353:TSNARE1_c.1278:RECQL4dup	yes	unknown	2392033	22019	30054	0	29
P-0044801-T01-IM6	SOMATIC	TSPAN9	TEK	12	9	3328633	27192473	Intron of TSPAN9(+):18Kb after exon 2	Intron of TEK(+):13bp before exon 11		GRCh37	TRANSLOCATION	0	5	Protein Fusion: out of frame  {TSPAN9:TEK}	IMPPRECISE	3to5	TSPAN9 (NM_001168320) - TEK (NM_000459) rearrangement: t(9;12)(p21.2;p13.32)(chr9:g.27192473::chr12:g.3328633)	yes	unknown	0	0	0	0	5
P-0029988-T01-IM6	SOMATIC	TTBK2	TP53BP1	15	15	43207625	43712791	5-UTR of TTBK2(-):170Kb before coding start	Exon 21 of TP53BP1(-)		GRCh37	DUPLICATION	10	194	Protein Fusion: mid-exon  {TTBK2:TP53BP1}	PRECISE	5to3	TTBK2(NM_173500) - TP53BP1 (NM_005657) Rearrangement: c.-68+5011:TTBK2_c.4378:TP53BP1dup	yes	unknown	505166	13637	39285	0	216
P-0058164-T01-IM6	SOMATIC	TTC28	APC	22	5	29065471	112175467	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	10	46	Protein Fusion: mid-exon  {TTC28:APC}	PRECISE	5to5	TTC28 (NM_001145418) - APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112175467::chr22:g.29065471)	yes	unknown	0	0	0	0	64
P-0024219-T01-IM6	SOMATIC	TTC7A	MSH6	2	2	47194380	48023056	Intron of TTC7A(+):8Kb before exon 4	Exon 3 of MSH6(+)		GRCh37	DELETION	10	3	Protein Fusion: mid-exon  {TTC7A:MSH6}	PRECISE	3to5	TTC7A (NM_020458) - MSH6 (NM_000179) rearrangement: c.518-7732:TTC7A_c.481:MSH6del	yes	unknown	828676	48122	22685	0	4
P-0039225-T01-IM6	SOMATIC	TTYH2	RPS6KA4	17	11	72227047	64128889	Exon 3 of TTYH2(+)	Intron of RPS6KA4(+):51bp before exon 6		GRCh37	TRANSLOCATION	10	76	Protein Fusion: mid-exon  {TTYH2:RPS6KA4}	PRECISE	3to5	TTYH2 (NM_032646) - RPS6KA4 (NM_003942) rearrangement: t(11;17)(q13.1;q25.1)(chr11:g.64128889::chr17:g.72227047)	yes	unknown	0	0	0	0	79
P-0040083-T01-IM6	SOMATIC	TTYH2	SOX9	17	17	70118690	72255415	Intron of SOX9(+):169bp before exon 2	Intron of TTYH2(+):852bp before exon 14		GRCh37	DUPLICATION	9	4	Protein Fusion: out of frame  {TTYH2:SOX9}	PRECISE	5to3	TTYH2 (NM_032646) - SOX9 (NM_000346) rearrangement: c.1525-853:TTYH2_c.432-170:SOX9dup	yes	unknown	2136725	12237	24103	0	4
P-0009647-T01-IM5	SOMATIC	TUBGCP3	BRCA2	13	13	32906232	113176627	Intron of BRCA2(+): 177bp before exon 10	Intron of TUBGCP3(-): 7bp after exon 14		GRCh37	INVERSION	9	7	Protein fusion: out of frame (TUBGCP3-BRCA2)	PRECISE	5to5	TUBGCP3 (NM_006322) - BRCA2 (NM_000059) rearrangement: c.1745+7:TUBGCP3_c.794-177:BRCA2inv	yes	unknown	80270395	437275	496125	0	5
P-0086599-T01-IM7	SOMATIC	U2AF1		21	21	44512636	44514722	Promoter of U2AF1(-):429bp from tx start	Intron of U2AF1(-):42bp after exon 6		GRCh37	DELETION			Deletion within transcript	PRECISE	3to5	U2AF1 (NM_006758) rearrangement: c.482+43:U2AF1_chr21:g.44512636del			2086	2684	3762	0	11
P-0028754-T01-IM6	SOMATIC	U2AF1	FGF12	21	3	44513280	192445271	Exon 8 of U2AF1(-)	5-UTR of FGF12(-):583Kb before coding start		GRCh37	TRANSLOCATION	10	37	Protein Fusion: mid-exon  {FGF12:U2AF1}	PRECISE	3to5	U2AF1 (NM_006758) rearrangement: t(3;21)(q28-29;q22.3)(chr3:g.192445271::chr21:g.44513280)	yes	unknown	0	0	0	0	64
P-0015960-T01-IM6	SOMATIC	U2AF2	HIST1H3B	19	6	56181895	26032161	Intron of U2AF2(+):837bp after exon 11	Exon 1 of HIST1H3B(-)		GRCh37	TRANSLOCATION	10	40	Protein Fusion: mid-exon  {U2AF2:HIST1H3B}	PRECISE	3to3	U2AF2 (NM_007279) - HIST1H3B (NM_003537) rearrangement: t(6;19)(p22.2;q13.42)(chr6:g.26032161::chr19:g.56181895)	yes	unknown	0	0	0	0	133
P-0046202-T01-IM6	SOMATIC	UBA2	CEBPA	19	19	33792314	34923410	Exon 1 of CEBPA(-)	Intron of UBA2(+):574bp after exon 3		GRCh37	INVERSION	10	537	Protein Fusion: mid-exon  {UBA2:CEBPA}	PRECISE	3to3	UBA2 (NM_005499) - CEBPA (NM_004364) rearrangement: c.293+574:UBA2_c.1007:CEBPAinv	yes	unknown	1131096	7648	11189	0	537
P-0010208-T01-IM5	SOMATIC	UBAC1	NOTCH1	9	9	138844044	139393554	Intron of UBAC1(-): 1Kb after exon 3	Intron of NOTCH1(-): 10bp after exon 32		GRCh37	INVERSION	23	11	Antisense fusion	PRECISE	5to5	NOTCH1 (NM_017617) - UBAC1 (NM_016172) rearrangement : c.6082+10:NOTCH1_c.333+1482:UBAC1inv	yes	unknown	549510	15773	14174	0	10
P-0062512-T01-IM7	SOMATIC	UBASH3A	ERG	21	21	39775548	43835766	Exon 4 of ERG(-)	Intron of UBASH3A(+):784bp before exon 6		GRCh37	INVERSION	10	21	Protein Fusion: mid-exon  {UBASH3A:ERG}	PRECISE	3to3	UBASH3A (NM_001001895) - ERG (NM_182918) rearrangement: c.554-785:UBASH3A_c.472:ERGinv	yes	unknown	4060218	112143	71152	0	21
P-0071030-T01-IM7	SOMATIC	UBE3C	DNMT1	19	7	10257225	156939910	Intron of DNMT1(-):25bp before exon 27	Intron of UBE3C(+):8Kb after exon 1		GRCh37	TRANSLOCATION	10	86	Protein Fusion: out of frame  {UBE3C:DNMT1}	PRECISE	3to3	UBE3C (NM_014671) - DNMT1 (NM_001379) rearrangement: t(7;19)(q36.3;p13.2)(chr7:g.156939910::chr19:g.10257225)	yes	unknown	0	0	0	0	86
P-0068367-T01-IM7	SOMATIC	UBTF	ETV4								GRCh37				UBTF-ETV4 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: UBTF-ETV4 fusion. Note: The rearrangement is an in-frame fusion between genes UBTF Exon2 (NM_001076683) and ETV4 Exon6 (NM_001986).	yes	unknown					
P-0072775-T01-IM7	SOMATIC	UNC5D	FGFR1	8	8	35149555	38274877	Intron of UNC5D(+):56Kb after exon 1	Exon 13 of FGFR1(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {UNC5D:FGFR1}	PRECISE	3to3	UNC5D (NM_080872) - FGFR1 (NM_001174067) rearrangement: c.103+56150:UNC5D_c.1703:FGFR1inv			3125322	59953	77717	0	11
P-0040684-T01-IM6	SOMATIC	UNK	H3F3B	17	17	73774762	73782813	Exon 4 of H3F3B(-)	Intron of UNK(+):2Kb after exon 1		GRCh37	INVERSION	10	2	Protein Fusion: mid-exon  {UNK:H3F3B}	PRECISE	3to3	UNK (NM_001080419) - H3F3B (NM_005324) rearrangement: c.104+1748:UNK_c.325:H3F3Binv	yes	unknown	8051	3331	5770	0	4
P-0033491-T01-IM6	SOMATIC	UPF1	DOCK2	19	5	18964185	169159363	Intron of UPF1(+):26bp after exon 8	Intron of DOCK2(+):14Kb after exon 22		GRCh37	TRANSLOCATION	10	7	Antisense Fusion	PRECISE	3to3	UPF1 (NM_002911) rearrangement: t(5;19)(q35.1;p13.11)(chr5:g.169159363::chr19:g.18964185)	yes	unknown	0	0	0	0	7
P-0052981-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18975776	18976904	Intron of UPF1(+):321bp before exon 21	Exon 23 of UPF1(+)		GRCh37	DELETION	10	30	Deletion within transcript : mid-exon	PRECISE	3to5	UPF1 (NM_002911) rearrangement: c.2858-322_c.3289del	yes	unknown	1128	8507	5425	0	33
P-0054356-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18962994	18963842	Exon 6 of UPF1(+)	Exon 7 of UPF1(+)		GRCh37	DELETION	10	11	Deletion within transcript : mid-exon	PRECISE	3to5	UPF1 (NM_002911) rearrangement: c.861_c.1019del	yes	unknown	848	2033	4822	0	12
P-0059970-T01-IM7	SOMATIC	UPF1	UPF1	19	19	18946631	18957139	Intron of UPF1(+):3Kb after exon 1	Intron of UPF1(+):211bp after exon 2		GRCh37	DUPLICATION	10	33	Duplication of 1 exon : out of frame	PRECISE	5to3	UPF1 (NM_002911) rearrangement: c.231+3382_c.371+211dup	yes	unknown	10508	2448	4975	0	34
P-0032482-T01-IM6	SOMATIC	UPF1	CEP89	19	19	18968053	33385263	Intron of UPF1(+):75bp before exon 15	Intron of CEP89(-):5Kb after exon 16		GRCh37	INVERSION	10	74	Protein Fusion: in frame  {CEP89:UPF1}	PRECISE	5to5	CEP89 (NM_032816) - UPF1(NM_002911) Rearrangement : c.1875+5500:CEP89_c.1969-76:UPF1inv	yes	unknown	14417210	54928	99299	0	83
P-0025693-T01-IM6	SOMATIC	UPF1		19	19	18703364	18972787	Promoter of C19orf60(+):4Kb from tx start	Intron of UPF1(+):31bp before exon 18		GRCh37	DELETION			Transcript Fusion {C19orf60:UPF1}	PRECISE	3to5	UPF1 (NM_002911) rearrangement: chr19:g.18703364_c.2458-32del			269423	21757	22610	0	24
P-0039229-T01-IM6	SOMATIC	UPF1	UPF1	19	19	16454164	18976270	IGR: 12Kb before EPS15L1(-)	Intron of UPF1(+):11bp after exon 21		GRCh37	INVERSION	7	5	UPF1-intragenic	PRECISE	3to3	UPF1 (NM_002911) rearrangement: c.3019+11:UPF1_chr19:g.16454164inv	yes	unknown	2522106	129825	187209	0	5
P-0052542-T01-IM6	SOMATIC	UPF1	ZNF676	19	19	18965785	22414804	Exon 10 of UPF1(+)	IGR: 53Kb before ZNF676(-)		GRCh37	INVERSION	7	3	UPF1-intragenic	PRECISE	5to5	UPF1 (NM_002911) rearrangement: c.1363:UPF1_chr19:g.22414804inv	yes	unknown	3449019	51472	56471	0	3
P-0067017-T01-IM7	SOMATIC	UPK3A	EP300	22	22	41572752	45682724	Intron of EP300(+):24bp before exon 31	Intron of UPK3A(+):747bp after exon 2		GRCh37	DUPLICATION	10	22	Protein Fusion: out of frame  {UPK3A:EP300}	PRECISE	5to3	UPK3A (NM_006953) - EP300 (NM_001429) rearrangement: c.209-329:UPK3A_c.5062-25:EP300dup	yes	unknown	4109972	39395	54909	0	22
P-0022444-T01-IM6	SOMATIC	USHBP1	KDM5A	19	12	17358572	459868	Promoter of USHBP1(-):2Kb from tx start	Exon 10 of KDM5A(-)		GRCh37	TRANSLOCATION	10	47	Antisense Fusion	PRECISE	5to5	KDM5A (NM_001042603) rearrangement: t(12;19)(p13.33;p13.11)(chr12:g.459868::chr19:g.17358572)	yes	unknown	0	0	0	0	67
P-0057999-T01-IM6	SOMATIC	USP10	RAF1	16	3	84768336	12641786	Intron of USP10(+):1Kb after exon 2	Intron of RAF1(-):8bp before exon 9		GRCh37	TRANSLOCATION	10	167	Protein Fusion: out of frame  {USP10:RAF1}	PRECISE	3to3	USP10 (NM_005153) - RAF1 (NM_002880) rearrangement: t(3;16)(p25.2;q24.1)(chr3:g.12641786::chr16:g.84768336)	yes	unknown	0	0	0	0	166
P-0077409-T01-IM7	SOMATIC	USP34	XPO1	2	2	61693000	61720013	Intron of USP34(-):5Kb after exon 1	Intron of XPO1(-):36bp after exon 13		GRCh37	DUPLICATION	10	26	Protein Fusion: in frame  {USP34:XPO1}	PRECISE	5to3	USP34 (NM_014709) - XPO1 (NM_003400) rearrangement: c.43+4785:USP34_c.1384+37:XPO1dup	yes	unknown	27013	15056	39789	0	34
P-0004827-T01-IM5	SOMATIC	USP34	XPO1	2	2	61438080	61726809	Intron of USP34(-): 827bp after exon 69	Intron of XPO1(-): 39bp after exon 7		GRCh37	DELETION	19	15	Protein fusion: in frame (XPO1-USP34)	PRECISE	3to5	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement : c.590+39:XPO1_c.8840+827:USP34del	yes	unknown	288729	31492	26278	0	15
P-0010581-T01-IM5	SOMATIC	USP34	XPO1	2	2	61695483	61753449	Intron of USP34(-): 2Kb after exon 1	Intron of XPO1(-): 106bp after exon 3		GRCh37	DELETION	7	5	Protein fusion: out of frame (XPO1-USP34)	PRECISE	3to5	XPO1(NM_003400) - USP34 (NM_014709 )Rearrangement : c.228+106:XPO1_c.43+2302:USP34del	yes	unknown	57966	36033	23624	0	5
P-0019776-T01-IM6	SOMATIC	USP6	CDK12	17	17	5065709	37673592	Intron of USP6(+):469bp before exon 25	Intron of CDK12(+):100bp before exon 10		GRCh37	DELETION			Protein Fusion: in frame  {USP6:CDK12}	PRECISE	3to5	USP6 (NM_004505) - CDK12 (NM_016507) rearrangement: c.2916-470:USP6_c.2847-101:CDK12del			32607883	319242	307251	0	33
P-0060504-T01-IM7	SOMATIC	USP8	VIMP	15	15	50786319	101818180	Exon 16 of USP8(+)	Promoter of VIMP(-):6Kb from tx start		GRCh37	INVERSION	10	31	Protein Fusion: mid-exon  {USP8:VIMP}	PRECISE	3to3	USP8 (NM_005154) rearrangement: c.2500:USP8_chr15:g.101818180inv	yes	unknown	51031861	652062	466883	0	31
P-0072989-T03-IM7	SOMATIC	USP8	USP8	15	15	37658851	50741563	IGR: 394Kb before MIR8063(-)	Intron of USP8(+):33bp before exon 4		GRCh37	INVERSION	8	8	USP8-intragenic	PRECISE	5to5	USP8 (NM_005154) rearrangement: c.250-34:UPS8_chr15:g.37658851inv	yes	unknown	13082712	155616	239656	0	8
P-0018695-T01-IM6	SOMATIC	UTRN	PREX2	8	6	69143556	144991818	Intron of PREX2(+):11bp before exon 40	Intron of UTRN(+):8Kb before exon 51		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {UTRN:PREX2}	PRECISE	5to3	UTRN (NM_007124) - PREX2 (NM_024870) rearrangement: t(6;8)(q24.2;q13.2)(chr6:g.144991818::chr8:g.69143556)			0	0	0	0	51
P-0007050-T01-IM5	SOMATIC	VANGL2	NTRK1	1	1	156845141	160375115	Intron of NTRK1(+): 171bp before exon 12	5-UTR of VANGL2(+): 11Kb before coding start		GRCh37	DUPLICATION			Transcript fusion (VANGL2-NTRK1)	PRECISE	5to3	VANGL2 (NM_020335) - NTRK1(NM_002529) rearrangement : c.-191+4456:VANGL2_c.1355-171:NTRK1dup			3529974	23485	20463	0	59
P-0024660-T01-IM6	SOMATIC	VEGFA	TXNDC12	6	1	43748572	52516077	Exon 6 of VEGFA(+)	Intron of TXNDC12(-):5Kb after exon 1		GRCh37	TRANSLOCATION	10	55	Antisense Fusion	PRECISE	3to5	VEGFA (NM_001171623) rearrangement: t(1;6)(p32.3;p21.1)(chr1:g.52516077::chr6:g.43748572)	yes	unknown	0	0	0	0	59
P-0065439-T01-IM7	SOMATIC	VEGFA	VEGFA	6	6	43738491	43748501	5-UTR of VEGFA(+):492bp before coding start	Exon 6 of VEGFA(+)		GRCh37	INVERSION	10	98	Antisense Fusion	PRECISE	3to3	VEGFA (NM_001171623) rearrangement: c.455:VEGFA_chr6:g.43738491inv	yes	unknown	10010	11972	11431	0	98
P-0030964-T01-IM6	SOMATIC	VEGFA	VEGFA	6	6	43738659	43742102	5-UTR of VEGFA(+):324bp before coding start	Exon 2 of VEGFA(+)		GRCh37	DELETION	10	32	Deletion within transcript : mid-exon	PRECISE	3to5	VEGFA (NM_001171623) rearrangement: c.-325_c.91del	yes	unknown	3443	1403	2383	0	32
P-0015668-T01-IM6	SOMATIC	VEGFA	CAPN11	6	6	43748451	44147781	Intron of VEGFA(+): 18bp before exon 6	Exon 14 of CAPN11(+)		GRCh37	DUPLICATION	26	25	Protein fusion: mid-exon (CAPN11-VEGFA)	PRECISE	5to3	CAPN11 (NM_007058) - VEGFA (NM_001171625) Rearrangement : c.1521:CAPN11_c.423-18:VEGFAdup	yes	unknown	399330	3804	4886	0	25
P-0012821-T01-IM5	SOMATIC	VEGFA	VEGFA	6	6	43746536	43797417	Intron of VEGFA(+): 90bp before exon 5	IGR: 59Kb before VEGFA(+)		GRCh37	DUPLICATION	21	26	VEGFA-intragenic	PRECISE	5to3	VEGFA (NM_001171623) rearrangement : g.43797417_c.393-90:VEGFAdup	yes	unknown	50881	16109	20203	0	26
P-0030363-T01-IM6	SOMATIC	VEGFA		6	6	43749796	51159019	Exon 7 of VEGFA(+)	IGR: 321Kb before PKHD1(-)		GRCh37	DELETION			VEGFA-intragenic	PRECISE	3to5	VEGFA (NM_001171623) Rearrangement : c.649:VEGFA_chr6:g.51159019del			7409223	7501	11138	0	46
P-0082661-T01-IM7	SOMATIC	VEGFA		6	4	43749542	111518209	Intron of VEGFA(+):150bp before exon 7	IGR: 20Kb before PITX2(-)		GRCh37	TRANSLOCATION			VEGFA-intragenic	IMPPRECISE	5to5	VEGFA (NM_001171623) rearrangement: t(4;6)(q25;p21.1)(chr4:g.111518209::chr6:g.43749542)			0	0	0	0	18
P-0068217-T01-IM7	SOMATIC	VHL	BALR6	3	3	10183653	17793134	Exon 1 of VHL(+)	IGR: 211Kb before LOC339862(+)		GRCh37	DELETION	10	10	VHL-intragenic	PRECISE	3to5	VHL (NM_000551) rearrangement: c.122:VHL_chr3:g.17793134del	yes	unknown	7609481	60196	109857	0	15
P-0082962-T01-IM7	SOMATIC	VHL		3	3	10191574	99177368	Exon 3 of VHL(+)	IGR: 96Kb before MIR548G(-)		GRCh37	INVERSION			VHL-intragenic	PRECISE	5to5	VHL (NM_000551) rearrangement: c.567:VHL_chr3:g.99177368inv			88985794	795740	1069746	0	5
P-0059578-T01-IM7	SOMATIC	VMP1	CDK12	17	17	37618564	57844246	Exon 1 of CDK12(+)	Intron of VMP1(+):2Kb after exon 6		GRCh37	DUPLICATION	10	57	Protein Fusion: mid-exon  {VMP1:CDK12}	PRECISE	5to3	VMP1 (NM_030938) - CDK12 (NM_016507) rearrangement: c.582+1747:VMP1_c.240:CDK12dup	yes	unknown	20225682	469117	1800177	0	61
P-0021788-T01-IM6	SOMATIC	VPS26A	FGFR2	10	10	70891619	123242226	Intron of VPS26A(+):1Kb before exon 2	Intron of FGFR2(-):985bp after exon 17		GRCh37	INVERSION	10	88	Protein Fusion: in frame  {VPS26A:FGFR2}	PRECISE	3to3	VPS26A (NM_004896) - FGFR2 (NM_000141) Rearrangement : c.4-1035:VPS26A_c.2301+986:FGFR2inv	yes	unknown	52350607	168576	228966	0	88
P-0048907-T01-IM6	SOMATIC	VPS41	APC	7	5	38866198	112173605	Intron of VPS41(-):4Kb after exon 5	Exon 16 of APC(+)		GRCh37	TRANSLOCATION	10	13	Protein Fusion: mid-exon  {VPS41:APC}	PRECISE	5to5	VPS41 (NM_014396) - APC (NM_000038) rearrangement: t(5;7)(q22.2;p14.1)(chr5:g.112173605::chr7:g.38866198)	yes	unknown	0	0	0	0	13
P-0077083-T01-IM7	SOMATIC	VTI1A	TCF7L2	10	10	114546088	114711140	Intron of VTI1A(+):29Kb before exon 8	Intron of TCF7L2(+):101bp before exon 3		GRCh37	DELETION	0	53	Protein Fusion: out of frame  {VTI1A:TCF7L2}	IMPPRECISE	3to5	VTI1A (NM_145206) - TCF7L2 (NM_001146274) rearrangement: c.561-28961:VTI1A_c.257-102:TCF7L2del	yes	unknown	165052	2108	2451	0	53
P-0004121-T01-IM5	SOMATIC	VWA3B	INPP4A	2	2	98908378	99193528	Intron of VWA3B(+): 1Kb after exon 23	Exon 25 of INPP4A(+)		GRCh37	DUPLICATION	62	29	Protein fusion: mid-exon (INPP4A-VWA3B)	PRECISE	5to3	INPP4A(NM_001134224) - VWA3B (NM_144992) Rearrangement : c.2723:INPP4A_c.3157+1293:VWA3Bdup	yes	unknown	285150	34050	37673	0	33
P-0028994-T01-IM6	SOMATIC	WDR27	GRIN2A	16	6	9892332	170002277	Intron of GRIN2A(-):11bp before exon 11	Intron of WDR27(-):37bp after exon 20		GRCh37	TRANSLOCATION			Protein Fusion: out of frame  {WDR27:GRIN2A}	PRECISE	3to5	WDR27 (NM_182552) - GRIN2A (NM_001134407) Rearrangement : t(6,16)(q27,p13.2)(chr6:g.170002277::chr16:g.989233)			0	0	0	0	23
P-0036423-T01-IM6	SOMATIC	WDR7	MALT1	18	18	54686372	56338906	Intron of WDR7(+):2Kb before exon 26	Exon 1 of MALT1(+)		GRCh37	DUPLICATION	7	6	Protein Fusion: mid-exon  {MALT1:WDR7}	PRECISE	5to3	MALT1 (NM_006785) - WDR7 (NM_015285) rearrangement: c.31:MALT1_c.4165-1604:WDR7dup	yes	unknown	1652534	3085	3922	0	6
P-0038241-T01-IM6	SOMATIC	WHSC1	WHSC1	17	4	47043304	1978321	Intron of GIP(-):1Kb after exon 2	Exon 21 of WHSC1(+)		GRCh37	TRANSLOCATION	10	21	Antisense Fusion	PRECISE	5to3	WHSC1 (NM_001042424) rearrangement: t(4;17)(p16.3;q21.32)(chr4:g.1978321::chr17:g.47043304)	yes	unknown	0	0	0	0	21
P-0019136-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1941503	1944064	Exon 9 of WHSC1(+)	Intron of WHSC1(+):3Kb after exon 9		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.1879_c.1881+2559del	yes	unknown	2561	725	601	0	10
P-0051651-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1907086	1919928	Intron of WHSC1(+):981bp after exon 3	Exon 5 of WHSC1(+)		GRCh37	DELETION	10	24	Deletion within transcript : mid-exon	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.760+981_c.988del	yes	unknown	12842	2076	3007	0	24
P-0060918-T01-IM7	SOMATIC	WHSC1		4	4	1901176	1902946	5-UTR of WHSC1(+):1Kb before coding start	Exon 2 of WHSC1(+)		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.565:WHSC1_chr4:g.1901176del			1770	3683	3909	0	10
P-0057377-T02-IM6	SOMATIC	WHSC1	WHSC1	4	4	1959696	1962223	Exon 16 of WHSC1(+)	Intron of WHSC1(+):538bp before exon 18		GRCh37	DUPLICATION	8	5	Duplication within transcript : mid-exon	PRECISE	5to3	WHSC1 (NM_001042424) rearrangement: c.2918_c.3256-539dup	yes	unknown	2527	3181	3509	0	5
P-0082380-T01-IM7	SOMATIC	WHSC1		4	4	1976933	1991932	Intron of WHSC1(+):87bp before exon 20	Intron of NELFA(-):336bp before exon 3		GRCh37	INVERSION			Protein Fusion: in frame  {NELFA:WHSC1}	PRECISE	5to5	WHSC1 (NM_001042424) rearrangement: c.3515-88:WHSC1_chr4:g.1991932inv			14999	4978	18810	0	140
P-0038972-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	119207	1936688	Intron of ZNF718(+):35Kb before exon 5	Intron of WHSC1(+):182bp before exon 7		GRCh37	DELETION	10	7	Protein Fusion: in frame  {ZNF718:WHSC1}	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.1556-183:WHSC1_chr4:g.119207del	yes	unknown	1817481	61371	95480	0	7
P-0032410-T01-IM6	SOMATIC	WHSC1		4	4	1977168	2480077	Intron of WHSC1(+):41bp after exon 20	5-UTR of RNF4(+):12Kb before coding start		GRCh37	DELETION			Transcript Fusion {WHSC1:RNF4}	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.3621+41:WHSC1_chr4:g.2480077del			502909	5631	5474	0	6
P-0074955-T01-IM7	SOMATIC	WHSC1	WHSC1	4	4	1842817	1976774	Intron of LETM1(-):256bp after exon 3	Intron of WHSC1(+):43bp after exon 19		GRCh37	DELETION	10	13	WHSC1-intragenic	PRECISE	3to5	WHSC1 (NM_001042424) rearrangement: c.3514+43:WHSC1_chr4:g.1842817del	yes	unknown	133957	22075	19209	0	14
P-0045950-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38161944	38166224	Intron of WHSC1L1(-):160bp after exon 14	Intron of WHSC1L1(-):3Kb before exon 13		GRCh37	INVERSION	10	4	Antisense Fusion	PRECISE	5to5	WHSC1L1 (NM_023034) rearrangement: c.2243-3261_c.2611+161inv	yes	unknown	4280	2542	4231	0	4
P-0028576-T01-IM6	SOMATIC	WHSC1L1		8	8	32505812	38156883	Exon 1 of NRG1(+)	Intron of WHSC1L1(-):78bp after exon 15		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: c.2758+79:WHSC1L1_chr8:g.32505812del			5651071	16218	21135	0	43
P-0043532-T01-IM6	SOMATIC	WHSC1L1		8	8	38170867	38176320	Intron of WHSC1L1(-):1Kb after exon 12	Intron of WHSC1L1(-):92bp after exon 9		GRCh37	DELETION			Deletion of 3 exons : in frame	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: c.1855+93_c.2242+1298del			5453	3084	4930	0	19
P-0033823-T01-IM6	SOMATIC	WHSC1L1	CHRNB3	8	8	38173401	42588145	Intron of WHSC1L1(-):28bp after exon 10	Intron of CHRNB3(+):453bp after exon 5		GRCh37	INVERSION	9	3	Protein Fusion: in frame  {WHSC1L1:CHRNB3}	PRECISE	5to5	WHSC1L1 (NM_023034) - CHRNB3 (NM_000749) Rearrangement : c.1986+29:WHSC1L1_c.1242+453:CHRNB3inv	yes	unknown	4414744	50084	68359	0	3
P-0050837-T01-IM6	SOMATIC	WHSC1L1		8	8	37998541	38148152	Promoter of ASH2L(+):35Kb from tx start	Exon 17 of WHSC1L1(-)		GRCh37	INVERSION			Protein Fusion: mid-exon  {WHSC1L1:ASH2L}	PRECISE	5to5	WHSC1L1 (NM_023034) rearrangement: c.2959:WHSC1L1_chr8:g.37998541inv			149611	15173	17008	0	27
P-0048227-T01-IM6	SOMATIC	WHSC1L1	COIL	17	8	55026059	38148033	Intron of COIL(-):688bp after exon 4	Exon 17 of WHSC1L1(-)		GRCh37	TRANSLOCATION	10	75	Protein Fusion: mid-exon  {WHSC1L1:COIL}	PRECISE	3to5	WHSC1L1 (NM_023034) - COIL (NM_004645) rearrangement: t(8;17)(p11.23;q22)(chr8:g.38148033::chr17:g.55026059)	yes	unknown	0	0	0	0	76
P-0055567-T01-IM6	SOMATIC	WHSC1L1	STAR	8	8	38005752	38139170	Exon 3 of STAR(-)	Intron of WHSC1L1(-):69bp before exon 20		GRCh37	DELETION	5	3	Protein Fusion: mid-exon  {WHSC1L1:STAR}	PRECISE	3to5	WHSC1L1 (NM_023034) - STAR (NM_000349) rearrangement: c.3502-69:WHSC1L1_c.272:STARdel	yes	unknown	133418	10672	1966	0	3
P-0055303-T02-IM6	SOMATIC	WHSC1L1	ANK1	8	8	38175444	41625556	Intron of WHSC1L1(-):968bp after exon 9	Intron of ANK1(-):10Kb before exon 2		GRCh37	DUPLICATION	10	60	Protein Fusion: out of frame  {WHSC1L1:ANK1}	PRECISE	5to3	WHSC1L1 (NM_023034) - ANK1 (NM_001142446) rearrangement: c.1855+969:WHSC1L1_c.127-9901:ANK1dup	yes	unknown	3450112	50138	486961	0	62
P-0022996-T01-IM6	SOMATIC	WHSC1L1	FGFR1	8	8	38173261	38274677	Intron of WHSC1L1(-):168bp after exon 10	Intron of FGFR1(-):146bp after exon 13		GRCh37	DUPLICATION			Protein Fusion: out of frame  {WHSC1L1:FGFR1}	PRECISE	5to3	WHSC1L1 (NM_023034) - FGFR1 (NM_001174067) rearrangement: c.1986+169:WHSC1L1_c.1756+147:FGFR1dup			101416	40519	574071	0	15
P-0050000-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	36507144	38145870	IGR: 135Kb before KCNU1(+)	Intron of WHSC1L1(-):134bp after exon 19		GRCh37	DELETION	10	7	WHSC1L1-intragenic	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: c.3501+135:WHSC1L1_chr8:g.36507144del	yes	unknown	1638726	7366	18989	0	7
P-0056626-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	17	8	37397089	38175576	IGR: 12Kb before FBXL20(-)	Intron of WHSC1L1(-):836bp after exon 9		GRCh37	TRANSLOCATION	10	7	WHSC1L1-intragenic	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: t(8;17)(p11.23;q12)(chr8:g.38175576::chr17:g.37397089)	yes	unknown	0	0	0	0	7
P-0015376-T01-IM6	SOMATIC	WHSC1L1		13	8	30470955	38175374	IGR: 46Kb after UBL3(-)	Intron of WHSC1L1(-): 1Kb after exon 9		GRCh37	TRANSLOCATION			WHSC1L1-intragenic	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: t(8;13)(p11.23;q12.3)(chr8:g.38175374::chr13:g.30470955)			0	0	0	0	5
P-0021833-T01-IM6	SOMATIC	WHSC1L1		8	8	38156940	41953873	Intron of WHSC1L1(-):21bp after exon 15	IGR: 57Kb before AP3M2(+)		GRCh37	INVERSION			WHSC1L1-intragenic	PRECISE	5to5	WHSC1L1 (NM_023034) Rearrangement : c.2758+22:WHSC1L1_chr8:g.41953873inv			3796933	74687	130120	0	29
P-0025468-T01-IM6	SOMATIC	WHSC1L1		8	8	37073664	38194986	IGR: 190Kb before LOC100507420(-)	Intron of WHSC1L1(-):1bp before exon 4		GRCh37	INVERSION			WHSC1L1-intragenic	PRECISE	3to3	WHSC1L1 (NM_023034) rearrangement: chr8:g.37073664_c.748-1:WHSC1L1inv			1121322	39063	66849	0	43
P-0028998-T01-IM6	SOMATIC	WHSC1L1		8	8	30205715	38162673	IGR: 34Kb before RBPMS-AS1(-)	Intron of WHSC1L1(-):92bp after exon 13		GRCh37	INVERSION			WHSC1L1-intragenic	PRECISE	5to5	WHSC1L1 (NM_023034) rearrangement: c.2440+93: WHSC1L1_chr8:g.30205715inv.			7956958	20514	14038	0	31
P-0038514-T01-IM6	SOMATIC	WHSC1L1		8	8	34562568	38153323	IGR: 79Kb before LINC01288(+)	Exon 16 of WHSC1L1(-)		GRCh37	DELETION			WHSC1L1-intragenic	PRECISE	3to5	WHSC1L1 (NM_023034) rearrangement: c.2906:WHSC1L1_chr8:g.34562568del			3590755	25619	28227	0	130
P-0045858-T01-IM6	SOMATIC	WHSC1L1		8	8	9352182	38173038	IGR: 61Kb before TNKS(+)	Exon 11 of WHSC1L1(-)		GRCh37	INVERSION			WHSC1L1-intragenic	PRECISE	3to3	WHSC1L1 (NM_023034) rearrangement: c.2011:WHSC1L1_chr8:g.9352182inv			28820856	49748	58036	0	7
P-0026422-T01-IM6	SOMATIC	WHSC1L1		17	8	74191825	38172814	Intron of RNF157(-):17Kb after exon 2	Intron of WHSC1L1(-):119bp after exon 11		GRCh37	TRANSLOCATION			Antisense Fusion	PRECISE	5to5	WHSC1L1 rearrangement: t(8;17)(p11.23;q25.1)(chr8:g.38172814::chr17:g.74191825)			0	0	0	0	8
P-0050553-T01-IM6	SOMATIC	WIBG	ERBB3	12	12	56314207	56492211	Intron of WIBG(-):7Kb after exon 1	Intron of ERBB3(+):72bp before exon 22		GRCh37	INVERSION	7	5	Protein Fusion: out of frame  {WIBG:ERBB3}	PRECISE	5to5	WIBG (NM_032345) - ERBB3 (NM_001982) rearrangement: c.37+7302:WIBG_c.2617-73:ERBB3inv	yes	unknown	178004	43837	21902	0	5
P-0047827-T02-IM6	SOMATIC	WIZ	BRD4	19	19	15355442	15543965	Intron of BRD4(-):31bp before exon 13	Intron of WIZ(-):4Kb after exon 3		GRCh37	DELETION	10	42	Protein Fusion: out of frame  {WIZ:BRD4}	PRECISE	3to5	WIZ (NM_021241) - BRD4 (NM_058243) rearrangement: c.529+3652:WIZ_c.2212-31:BRD4del	yes	unknown	188523	29450	25265	0	43
P-0054497-T01-IM6	SOMATIC	WT1	WT1	11	11	32414234	32416530	Exon 8 of WT1(-)	Intron of WT1(-):1Kb after exon 7		GRCh37	DELETION	10	5	Deletion within transcript : mid-exon	PRECISE	3to5	WT1 (NM_024426) rearrangement: c.1249+1273_c.1317del	yes	unknown	2296	628	802	0	5
P-0057452-T01-IM6	SOMATIC	WT1	WT1	11	11	32434363	32456536	Intron of WT1(-):4Kb after exon 5	Exon 1 of WT1(-)		GRCh37	DELETION	10	8	Deletion within transcript : mid-exon	PRECISE	3to5	WT1 (NM_024426) rearrangement: c.356_c.1001+3673del	yes	unknown	22173	14058	13716	0	8
P-0030482-T01-IM6	SOMATIC	WT1	WT1	20	11	30195055	32450105	Promoter of ID1(+):2Kb from tx start	Exon 2 of WT1(-)		GRCh37	TRANSLOCATION	10	8	Protein Fusion: mid-exon  {WT1:ID1}	PRECISE	5to5	WT1 (NM_024426) rearrangement: t(11;20)(p13;q11.21)(chr11:g.32450105::chr20:g.30195055)	yes	unknown	0	0	0	0	10
P-0014511-T01-IM6	SOMATIC	WWOX	FANCA	16	16	78164970	89815045	Intron of WWOX(+): 16Kb after exon 4	Intron of FANCA(-): 22bp after exon 33		GRCh37	INVERSION	13	7	Protein fusion: out of frame (FANCA-WWOX)	PRECISE	5to5	FANCA (NM_000135) - WWOX (NM_016373) rearrangement: c.3348+22:FANCA_c.409+15919:WWOXinv	yes	unknown	11650075	276218	252246	0	7
P-0057103-T01-IM6	SOMATIC	WWTR1	WWTR1	4	3	139694127	149238661	IGR: 243Kb before CCRN4L(+)	Exon 7 of WWTR1(-)		GRCh37	TRANSLOCATION	10	11	WWTR1-intragenic	PRECISE	5to5	WWTR1 (NM_001168280) rearrangement: t(3;4)(q25.1;q31.1)(chr3:g.149238661::chr4:g.139694127)	yes	unknown	0	0	0	0	11
P-0059651-T01-IM7	SOMATIC	WWTR1	LINC01014	3	3	149238883	178036890	Intron of WWTR1(-):107bp before exon 7	IGR: 100Kb before LINC01014(+)		GRCh37	DELETION	0	6	WWTR1-intragenic	IMPPRECISE	3to5	WWTR1 (NM_001168280) rearrangement: c.1019-107:WWTR1_chr3:g.178036890del	yes	unknown	28798007	140097	171476	0	6
P-0067977-T01-IM7	SOMATIC	XIAP	XIAP	X	X	123019795	123029504	Exon 2 of XIAP(+)	Intron of XIAP(+):3Kb after exon 5		GRCh37	DUPLICATION	10	118	Duplication within transcript : mid-exon	PRECISE	5to3	XIAP (NM_001167) rearrangement: c.283_c.1099+2881dup	yes	unknown	9709	11741	26227	0	122
P-0038373-T01-IM6	SOMATIC	XIAP		X	22	123022430	42014109	Intron of XIAP(+):38bp before exon 3	Intron of DESI1(-):3Kb after exon 1		GRCh37	TRANSLOCATION			XIAP-intragenic	PRECISE	5to3	XIAP (NM_001167) rearrangement: t(22;X)(q13.2;q25)(chr22:g.42014109::chrX:g.123022430)			0	0	0	0	73
P-0068890-T02-IM7	SOMATIC	XPO1		2	2	60690979	61718963	Intron of BCL11A(-):1Kb before exon 4	Intron of XPO1(-):206bp after exon 16		GRCh37	INVERSION			Antisense Fusion	PRECISE	5to5	XPO1 (NM_003400) rearrangement: c.1887+207:XPO1_chr2:g.60690979inv			1027984	28692	213814	0	143
P-0059163-T01-IM7	SOMATIC	XPO1	XPO1	2	2	61742774	61753559	Intron of XPO1(-):7Kb after exon 4	Exon 3 of XPO1(-)		GRCh37	DELETION	10	52	Deletion within transcript : mid-exon	PRECISE	3to5	XPO1 (NM_003400) rearrangement: c.224_c.301+6972del	yes	unknown	10785	852	998	0	97
P-0014879-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61721176	61724984	Exon 12 of XPO1(-)	Intron of XPO1(-): 824bp after exon 9		GRCh37	DUPLICATION	11	9	Duplication within transcript: mid-exon	PRECISE	5to3	XPO1 (NM_003400) rearrangement: c.1098_c.759+824dup	yes	unknown	3808	3349	5296	0	9
P-0066272-T01-IM7	SOMATIC	XPO1	USP34	2	2	61697824	61711216	Exon 1 of USP34(-)	Exon 21 of XPO1(-)		GRCh37	DELETION	10	12	Protein Fusion: mid-exon  {XPO1:USP34}	PRECISE	3to5	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.2533:XPO1_c.4:USP34del	yes	unknown	13392	6484	7542	0	12
P-0022767-T01-IM6	SOMATIC	XPO1	EXOC6B	2	2	61715910	72977233	Intron of XPO1(-):4bp before exon 18	Intron of EXOC6B(-):9Kb before exon 2		GRCh37	DELETION	7	4	Protein Fusion: out of frame  {EXOC6B:XPO1}	PRECISE	3to5	XPO1 (NM_003400) rearrangement: chr2:g.72977233_c.2023-4:XPO1del	yes	unknown	11261323	31418	42856	0	4
P-0037511-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61705818	61713538	3-UTR of XPO1(-):136bp after coding stop	Intron of XPO1(-):441bp before exon 20		GRCh37	DUPLICATION	10	14	XPO1-intragenic	PRECISE	5to3	XPO1 (NM_003400) Rearrangement : c.2314-441_c.*137dup	yes	unknown	7720	5991	6596	0	16
P-0068811-T02-IM7	SOMATIC	XPO1	SLC20A1	2	2	61706045	113432375	Exon 25 of XPO1(-)	IGR: 29Kb before SLC20A1(+)		GRCh37	INVERSION	10	45	XPO1-intragenic	PRECISE	3to3	XPO1 (NM_003400) rearrangement: c.3126:XPO1_chr2:g.113432375inv	yes	unknown	51726330	283539	309916	0	44
P-0073744-T01-IM7	SOMATIC	XPO1	XPO1	8	2	40114439	61706061	IGR: 103Kb before C8orf4(+)	Exon 25 of XPO1(-)		GRCh37	TRANSLOCATION	10	28	XPO1-intragenic	PRECISE	3to3	XPO1 (NM_003400) rearrangement: t(2;8)(p15;p11.21)(chr2:g.61706061::chr8:g.40114439)	yes	unknown	0	0	0	0	28
P-0057262-T01-IM6	SOMATIC	XPO1		2	2	61729474	61774697	Intron of XPO1(-):29bp before exon 5	IGR: 70Kb before XPO1(-)		GRCh37	DELETION			XPO1-intragenic	PRECISE	3to5	XPO1 (NM_003400) rearrangement: c.302-29:XPO1_chr2:g.61774697del			45223	1723	5404	0	12
P-0035571-T01-IM6	SOMATIC	XRCC2	SHH	7	7	152357811	155601095	Exon 2 of XRCC2(-)	Intron of SHH(-):2Kb before exon 2		GRCh37	INVERSION	10	12	Antisense Fusion	PRECISE	5to5	XRCC2 (NM_005431) Rearrangement : c.96:XRCC2_c.301-1844:SHHinv	yes	unknown	3243284	5090	4633	0	15
P-0052035-T03-IM6	SOMATIC	XRCC2	XRCC2	7	7	151554813	152346283	Intron of PRKAG2(-):19Kb after exon 1	Exon 3 of XRCC2(-)		GRCh37	INVERSION	10	42	Antisense Fusion	PRECISE	5to5	XRCC2 (NM_005431) rearrangement: c.287:XRCC2_chr7:g.151554813inv	yes	unknown	791470	100972	80983	0	44
P-0038909-T01-IM6	SOMATIC	XRCC2	XRCC2	X	7	33346860	152357896	Intron of DMD(-):11Kb after exon 1	Intron of XRCC2(-):29bp before exon 2		GRCh37	TRANSLOCATION	0	31	XRCC2-intragenic	IMPPRECISE	3to3	XRCC2 (NM_005431) rearrangement: t(7;X)(q36.1;p21.1)(chr7:g.152357896::chrX:g.33346860)	yes	unknown	0	0	0	0	31
P-0062107-T03-IM7	SOMATIC	XRCC2	XRCC2	12	7	108488962	152346025	IGR: 35Kb before WSCD2(+)	Exon 3 of XRCC2(-)		GRCh37	TRANSLOCATION	10	43	XRCC2-intragenic	PRECISE	3to3	XRCC2 (NM_005431) rearrangement: t(7;12)(q36.1;q23.3)(chr7:g.152346025::chr12:g.108488962)	yes	unknown	0	0	0	0	42
P-0014120-T01-IM5	SOMATIC	XRCC2		8	7	117398324	152346274	IGR: 259Kb before EIF3H(-)	Exon 3 of XRCC2(-)		GRCh37	TRANSLOCATION			XRCC2-intragenic	IMPRECISE	5to3	XRCC2 (NM_005431) rearrangement: t(7;8)(q36.1;q23.3)(chr7:g.152346274::chr8:g.117398324)			0	0	0	0	169
P-0087659-T01-IM7	SOMATIC	XRCC2		15	7	42127224	152345699	Exon 3 of JMJD7-PLA2G4B(+)	3-UTR of XRCC2(-):27bp after coding stop		GRCh37	TRANSLOCATION			XRCC2-intragenic	PRECISE	5to5	XRCC2 (NM_005431) rearrangement: t(7;15)(7q36.1;15q15.1)(chr7:g.152345699::chr15:g.42127224)			0	0	0	0	5
P-0026806-T01-IM6	SOMATIC	XRN2	PTPRS	20	19	21300045	5256123	Intron of XRN2(+):7Kb before exon 2	Exon 9 of PTPRS(-)		GRCh37	TRANSLOCATION	10	90	Protein Fusion: mid-exon  {PTPRS:XRN2}	PRECISE	5to5	PTPRS (NM_002850) - XRN2 (NM_012255) rearrangement :t(19;20)(p13.3;p11.22)(chr19:g.5256123::chr20:g.21300045)	yes	unknown	0	0	0	0	143
P-0047961-T01-IM6	SOMATIC	YAP1	DDX10	11	11	102098277	108597375	Exon 8 of YAP1(+)	Intron of DDX10(+):3Kb after exon 13		GRCh37	INVERSION	10	10	YAP1-intragenic	PRECISE	5to5	YAP1 (NM_001130145) rearrangement: c.1241:YAP1_chr11:g.108597375inv	yes	unknown	6499098	69677	91762	0	11
P-0024108-T01-IM6	SOMATIC	YAP1		11	11	101985127	127711790	Intron of YAP1(+):2bp after exon 2	IGR: 571Kb before LOC101929497(+)		GRCh37	INVERSION			YAP1-intragenic	PRECISE	3to3	YAP1 (NM_001130145) rearrangement: c.572+2:YAP1_chr11:g.127711790inv			25726663	310070	219486	0	35
P-0028344-T01-IM6	SOMATIC	YAP1		11	5	102056674	58795652	Intron of YAP1(+):74bp before exon 4	Intron of PDE4D(-):284Kb before exon 4		GRCh37	TRANSLOCATION			YAP1-intragenic	PRECISE	5to3	YAP1 (NM_001130145) rearrangement: t(5;11)(q11.2;q22.1)(chr5:g.58795652::chr11:g.102056674)			0	0	0	0	41
P-0035093-T01-IM6	SOMATIC	YAP1		11	1	102076978	119374897	Intron of YAP1(+):173bp after exon 5	IGR: 51Kb before TBX15(-)		GRCh37	TRANSLOCATION			YAP1-intragenic	IMPPRECISE	3to3	YAP1 (NM_001130145) rearrangement: t(1;11)(p12;q22.1)(chr1:g.119374897::chr11:g.102076978)			0	0	0	0	7
P-0037338-T01-IM6	SOMATIC	YES1	ADRBK2	22	18	26044366	742917	Intron of ADRBK2(+):4Kb after exon 3	Exon 8 of YES1(-)		GRCh37	TRANSLOCATION	0	24	Protein Fusion: mid-exon  {YES1:ADRBK2}	IMPPRECISE	5to5	YES1 (NM_005433) - ADRBK2 (NM_005160) rearrangement: t(18;22)(p11.32;q12.1)(chr18:g.742917::chr22:g.26044366)	yes	unknown	0	0	0	0	42
P-0020358-T01-IM6	SOMATIC	YWHAE	NOTCH1	17	9	1296199	139397624	Intron of YWHAE(-):7Kb after exon 1	Intron of NOTCH1(-):9bp after exon 27		GRCh37	TRANSLOCATION	10	108	Protein Fusion: in frame  {YWHAE:NOTCH1}	PRECISE	5to3	YWHAE (NM_006761) - NOTCH1 (NM_017617) rearrangement: t(9;17)(q34.3;p13.3)(chr9:g.139397624::chr17:g.1296199)	yes	unknown	0	0	0	0	115
P-0027762-T01-IM6	SOMATIC	ZC3HAV1	BRAF	7	7	138765420	140485946	Intron of ZC3HAV1(-):431bp before exon 4	Intron of BRAF(-):1Kb after exon 9		GRCh37	DUPLICATION	5	4	Protein Fusion: in frame  {ZC3HAV1:BRAF}	PRECISE	5to3	ZC3HAV1 (NM_020119) - BRAF (NM_004333) rearrangement: c.698-431:ZC3HAV1_c.1177+1402:BRAFdup	yes	unknown	1720526	29528	58413	0	4
P-0027762-T01-IM6	SOMATIC	ZC3HAV1	BRAF								GRCh37				ZC3HAV1-BRAF Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ZC3HAV1-BRAF fusion. Note: The rearrangement is an in-frame fusion between genes ZC3HAV1 Exon3 (NM_020119) and BRAF Exon10 (NM_004333).	yes	unknown					
P-0049248-T01-IM6	SOMATIC	ZCCHC14	FANCA	16	16	87457371	89806059	Intron of ZCCHC14(-):44bp after exon 4	Intron of FANCA(-):98bp before exon 40		GRCh37	DUPLICATION	0	14	Protein Fusion: out of frame  {ZCCHC14:FANCA}	IMPPRECISE	5to3	ZCCHC14 (NM_015144) - FANCA (NM_000135) rearrangement: c.429+45:ZCCHC14_c.3935-98:FANCAdup	yes	unknown	2348688	65778	98838	0	14
P-0006873-T01-IM5	SOMATIC	ZCCHC6	EGFR	9	7	88930920	55238031	Intron of ZCCHC6(-): 1Kb after exon 17	Exon 16 of EGFR(+)		GRCh37	TRANSLOCATION	11	27	Protein fusion: mid-exon (EGFR-ZCCHC6)	PRECISE	3to3	EGFR (NM_005228) - ZCCHC6  (NM_024617) rearrangement :  : t(7;9)(chr7p11.2;chr9q21.33)(chr7:g.55238031::chr9:g.88930920)	yes	unknown	0	0	0	0	27
P-0015061-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72832169	72865550	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-): 2Kb before exon 5		GRCh37	INVERSION	13	10	Antisense fusion	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement: c.3449-1792_c.4412inv	yes	unknown	33381	10825	10670	0	10
P-0047673-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72845783	72881203	Intron of ZFHX3(-):20bp after exon 6	Intron of ZFHX3(-):17Kb before exon 5		GRCh37	INVERSION	10	56	Antisense Fusion	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement: c.3449-17445_c.3663+21inv	yes	unknown	35420	2432	3036	0	58
P-0051599-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	69352129	72833952	Intron of VPS4A(+):423bp before exon 4	Exon 8 of ZFHX3(-)		GRCh37	DELETION	10	12	Antisense Fusion	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.3941:ZFHX3_chr16:g.69352129del	yes	unknown	3481823	47981	64703	0	15
P-0070312-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72993005	73014381	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-):193Kb before coding start		GRCh37	INVERSION	10	34	Antisense Fusion	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement: c.1040:ZFHX3_chr16:g.73014381inv	yes	unknown	21376	6342	11046	0	52
P-0086051-T02-IM7	SOMATIC	ZFHX3		16	16	11559572	72993551	5-UTR of LOC101927131(+):7Kb before coding start	Exon 2 of ZFHX3(-)		GRCh37	DELETION			Antisense Fusion	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.494:ZFHX3_chr16:g.11559572del			61433979	525612	504753	0	12
P-0038524-T01-IM6	SOMATIC	ZFHX3		16	16	72822898	72939608	Intron of ZFHX3(-):151bp before exon 10	Intron of ZFHX3(-):16Kb before exon 4		GRCh37	DELETION			Deletion of 6 exons : out of frame	PRECISE	3to5	ZFHX3 (NM_006885 ) Rearrangement :c.9428-151_c.3217-15747del			116710	30399	38583	0	26
P-0009375-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72822915	72963250	Intron of ZFHX3(-): 168bp before exon 10	Intron of ZFHX3(-): 21Kb after exon 3		GRCh37	DELETION	17	18	Deletion of 6 exons: out of frame	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.3216+21118_c.9428-168del	yes	unknown	140335	94040	75652	0	17
P-0030981-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72821365	72822534	Exon 10 of ZFHX3(-)	Exon 10 of ZFHX3(-)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.9641_c.10810del	yes	unknown	1169	3225	5701	0	15
P-0032823-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72989585	72992738	Intron of ZFHX3(-):2Kb after exon 2	Exon 2 of ZFHX3(-)		GRCh37	DELETION	10	38	Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.1307_c.2719+1741del	yes	unknown	3153	10597	8898	0	48
P-0054388-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72827970	73060801	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-):240Kb before coding start		GRCh37	DELETION	10	111	Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.8611:ZFHX3_chr16:g.73060801del	yes	unknown	232831	84913	108821	0	118
P-0052530-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72992212	73076988	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-):256Kb before coding start		GRCh37	DELETION	10	6	Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.1833:ZFHX3_chr16:g.73076988del	yes	unknown	84776	13219	15181	0	6
P-0008938-T04-IM6	SOMATIC	ZFHX3		16	16	72828919	73073574	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-):253Kb before coding start		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.7662_chr16:g.73073574del			244655	91907	92947	0	6
P-0017932-T01-IM6	SOMATIC	ZFHX3		16	16	72821567	72834653	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):625bp before exon 8		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.3865-625_c.10608del			13086	40098	42919	0	55
P-0055173-T02-IM6	SOMATIC	ZFHX3		16	16	72821884	72844684	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):791bp after exon 7		GRCh37	DELETION			Deletion within transcript : mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.3864+792_c.10291del			22800	36481	50677	0	50
P-0015692-T01-IM6	SOMATIC	ZFHX3		16	16	72992241	73018578	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-): 25Kb before coding start		GRCh37	DELETION			Deletion within transcript: mid-exon	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.4970_g.112190339del			26337	18127	13409	0	17
P-0024793-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72953144	72993247	Intron of ZFHX3(-):29Kb before exon 4	Exon 2 of ZFHX3(-)		GRCh37	DUPLICATION	10	12	Duplication within transcript : mid-exon	PRECISE	5to3	ZFHX3 (NM_006885) Rearrangement : c.798_c.3217-29283dup	yes	unknown	40103	19052	15372	0	13
P-0059084-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72822020	72825998	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):1Kb after exon 9		GRCh37	DUPLICATION	10	7	Duplication within transcript : mid-exon	PRECISE	5to3	ZFHX3 (NM_006885) rearrangement: c.9427+1156_c.10155dup	yes	unknown	3978	5126	7161	0	7
P-0063222-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72830663	72895941	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-):28Kb after exon 4		GRCh37	DUPLICATION	7	6	Duplication within transcript : mid-exon	PRECISE	5to3	ZFHX3 (NM_006885) rearrangement: c.3448+27689_c.5918dup	yes	unknown	65278	20091	17423	0	6
P-0009221-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72831760	72835465	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-): 1Kb before exon 8		GRCh37	DUPLICATION	58	44	Duplication within transcript: mid-exon	PRECISE	5to3	ZFHX3 (NM_006885) rearrangement: c.3865-1437_c.4821dup	yes	unknown	3705	13558	14752	0	43
P-0055799-T03-IM7	SOMATIC	ZFHX3	ZFHX3	19	16	3034795	72821251	Intron of TLE2(-):6Kb before exon 3	Exon 10 of ZFHX3(-)		GRCh37	TRANSLOCATION	0	5	Protein Fusion: mid-exon  {ZFHX3:TLE2}	IMPPRECISE	3to5	ZFHX3 (NM_006885) rearrangement: t(16;19)(q22.2;p13.3)(chr16:g.72821251::chr19:g.3034795)	yes	unknown	0	0	0	0	5
P-0008591-T01-IM5	SOMATIC	ZFHX3	BATF	16	14	72829355	76000033	Exon 9 of ZFHX3(-)	Intron of BATF(+): 9Kb after exon 2		GRCh37	TRANSLOCATION	75	54	Protein fusion: mid-exon (ZFHX3-BATF)	PRECISE	5to5	ZFHX3 (NM_006885) - BATF (NM_006399) rearrangement: t(14;16)(q24.3;q22.2)(chr14:g.76000033::chr16:g.72829355 )	yes	unknown	0	0	0	0	51
P-0012820-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72523259	72984364	IGR: 294Kb before ZFHX3(-)	Intron of ZFHX3(-): 4bp after exon 3		GRCh37	DELETION	51	80	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement : chr16:g.72984364_g.72523259del	yes	unknown	461105	103811	67001	0	78
P-0012026-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72802720	72984734	IGR: 14Kb before ZFHX3(-)	Exon 3 of ZFHX3(-)		GRCh37	INVERSION	109	50	ZFHX3-intragenic	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement : chr16:g.72802720_c.2850inv	yes	unknown	182014	132738	83391	0	49
P-0005959-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72795737	72831409	IGR: 21Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	25	11	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement : chr16:g.72795737_c.5172del	yes	unknown	35672	74400	62013	0	11
P-0018383-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72795294	72821894	IGR: 21Kb before ZFHX3(-)	Exon 10 of ZFHX3(-)		GRCh37	DELETION	10	8	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement : chr16:g.72795294_c.10281del	yes	unknown	26600	5591	4580	0	8
P-0026682-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72801772	72827767	IGR: 15Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	10	3	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.8814:ZFHX3_chr16:g.72801772del	yes	unknown	25995	8855	10184	0	3
P-0038658-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72810206	72827544	IGR: 7Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	5	5	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement : chr16:g.72810206_c.9037del	yes	unknown	17338	4485	8501	0	5
P-0038940-T01-IM6	SOMATIC	ZFHX3	LINC00911	16	14	72831501	84173799	Exon 9 of ZFHX3(-)	IGR: 2Mb before LINC00911(+)		GRCh37	TRANSLOCATION	10	57	ZFHX3-intragenic	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement: t(14;16)(q31.2;q22.2)(chr14:g.84173799::chr16:g.72831501)	yes	unknown	0	0	0	0	63
P-0046495-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72804103	72830512	IGR: 13Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	0	44	ZFHX3-intragenic	IMPPRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.6069:ZFHX3_chr16:g.72804103del	yes	unknown	26409	41521	40066	0	44
P-0047673-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72505498	72845549	3-UTR of LINC01572(-):193Kb after coding stop	Exon 7 of ZFHX3(-)		GRCh37	INVERSION	10	32	ZFHX3-intragenic	PRECISE	3to3	ZFHX3 (NM_006885) rearrangement: c.3791:ZFHX3_chr16:g.72505498inv	yes	unknown	340051	44526	51306	0	31
P-0048269-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72597392	72827228	3-UTR of LINC01572(-):102Kb after coding stop	Exon 9 of ZFHX3(-)		GRCh37	DELETION	9	6	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.9353:ZFHX3_chr16:g.72597392del	yes	unknown	229836	11725	13241	0	6
P-0050257-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72795899	72831645	IGR: 21Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	0	5	ZFHX3-intragenic	IMPPRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.4936:ZFHX3_chr16:g.72795899del	yes	unknown	35746	41051	43026	0	5
P-0054679-T01-IM6	SOMATIC	ZFHX3	ZFHX3	17	16	46833832	72845807	IGR: 6Kb before TTLL6(-)	Exon 6 of ZFHX3(-)		GRCh37	TRANSLOCATION	0	12	ZFHX3-intragenic	IMPPRECISE	3to3	ZFHX3 (NM_006885) rearrangement: t(16;17)(q22.2;q21.32)(chr16:g.72845807::chr17:g.46833832)	yes	unknown	0	0	0	0	12
P-0050353-T01-IM6	SOMATIC	ZFHX3	MIR6074	16	12	72994092	66396352	5-UTR of ZFHX3(-):173Kb before coding start	IGR: 21Kb before MIR6074(-)		GRCh37	TRANSLOCATION	0	5	ZFHX3-intragenic	IMPPRECISE	3to5	ZFHX3 (NM_006885) rearrangement: t(12;16)(q14.3;q22.2)(chr12:g.66396352::chr16:g.72994092)	yes	unknown	0	0	0	0	5
P-0055657-T01-IM6	SOMATIC	ZFHX3	ZFHX3	X	16	101310401	72831698	IGR: 70Kb before TCEAL2(+)	Exon 9 of ZFHX3(-)		GRCh37	TRANSLOCATION	10	26	ZFHX3-intragenic	PRECISE	3to3	ZFHX3 (NM_006885) rearrangement: t(16;X)(q22.2;q22.1)(chr16:g.72831698::chrX:g.101310401)	yes	unknown	0	0	0	0	26
P-0042476-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72733095	72830494	IGR: 84Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	INVERSION	10	101	ZFHX3-intragenic	PRECISE	5to5	ZFHX3 (NM_006885) rearrangement: c.6087:ZFHX3_chr16:g.72733095inv	yes	unknown	97399	39993	71888	0	124
P-0024556-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72718236	72993629	IGR: 99Kb before ZFHX3(-)	Exon 2 of ZFHX3(-)		GRCh37	DELETION	10	4	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement: chr16:g.72718236_c.416:ZFHX3del	yes	unknown	275393	76018	112721	0	4
P-0067524-T01-IM7	SOMATIC	ZFHX3	GSE1	16	16	72827491	85606598	Exon 9 of ZFHX3(-)	IGR: 38Kb before GSE1(+)		GRCh37	DELETION	10	14	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.9090:ZFHX3_chr16:g.85606598del	yes	unknown	12779107	110478	178946	0	17
P-0070644-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72654137	72985057	3-UTR of LINC01572(-):45Kb after coding stop	Intron of ZFHX3(-):193bp before exon 3		GRCh37	INVERSION	10	16	ZFHX3-intragenic	PRECISE	3to3	ZFHX3 (NM_006885) rearrangement: c.2720-193:ZFHX3_chr16:g.72654137inv	yes	unknown	330920	54085	72739	0	16
P-0071735-T02-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72797281	72828230	IGR: 20Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION	10	23	ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.8351:ZFHX3_chr16:g.72797281del	yes	unknown	30949	14108	10850	0	24
P-0025187-T01-IM6	SOMATIC	ZFHX3		16	6	72992119	156231802	Exon 2 of ZFHX3(-)	IGR: 515Kb before NOX3(-)		GRCh37	TRANSLOCATION			ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: t(6;16)(q25.3;q22.3)(chr6:g.156231802::chr16:g.72992119)			0	0	0	0	28
P-0033812-T01-IM6	SOMATIC	ZFHX3		16	16	72829624	73684489	Exon 9 of ZFHX3(-)	IGR: 264Kb before LINC01568(+)		GRCh37	DELETION			ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) Rearrangement : c.6957:ZFHX3_chr16:g.73684489del			854865	42493	46327	1	21
P-0037729-T01-IM6	SOMATIC	ZFHX3		16	16	72798880	72829520	IGR: 18Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)		GRCh37	DELETION			ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.7061:ZFHX3_chr16:g.72798880del			30640	24987	24261	0	20
P-0071454-T01-IM7	SOMATIC	ZFHX3		16	16	72834056	73141668	Intron of ZFHX3(-):28bp before exon 8	IGR: 15Kb before HCCAT5(+)		GRCh37	INVERSION			ZFHX3-intragenic	PRECISE	3to3	ZFHX3 (NM_006885) rearrangement: c.3865-28:ZFHX3_chr16:g.73141668inv			307612	16424	27345	0	7
P-0083956-T01-IM7	SOMATIC	ZFHX3		16	16	72297970	72993177	IGR: 19Kb before LINC01572(-)	Exon 2 of ZFHX3(-)		GRCh37	DELETION			ZFHX3-intragenic	PRECISE	3to5	ZFHX3 (NM_006885) rearrangement: c.868:ZFHX3_chr16:g.72297970del			695207	49266	7060	0	194
P-0014990-T01-IM6	SOMATIC	ZFP30	MLL2	19	12	38141811	49432673	5-UTR of ZFP30(-): 3Kb before coding start	Exon 34 of MLL2(-)		GRCh37	TRANSLOCATION	11	29	Protein fusion: mid-exon (MLL2-ZFP30)	PRECISE	3to5	MLL2 (NM_003482) -  ZFP30 (NM_014898) Rearrangement : t(12;19)(q13.12;q13.13)(chr12:g.49432673::chr19:g.38141811)	yes	unknown	0	0	0	0	27
P-0045566-T01-IM6	SOMATIC	ZFPM2	ALK	8	2	106384092	29447902	Intron of ZFPM2(+):47Kb before exon 2	Intron of ALK(-):424bp after exon 19		GRCh37	TRANSLOCATION	10	29	Protein Fusion: in frame  {ZFPM2:ALK}	PRECISE	3to3	ZFPM2 (NM_012082) - ALK (NM_004304) fusion: t(2;8)(p23.2;q23.1)(chr2:g.29447902::chr8:g.106384092)	yes	unknown	0	0	0	0	29
P-0065036-T02-IM7	SOMATIC	ZGPAT	RTEL1	20	20	62320570	62348090	Intron of RTEL1(+):85bp after exon 22	Intron of ZGPAT(+):8Kb after exon 2		GRCh37	DUPLICATION	7	3	Protein Fusion: out of frame  {ZGPAT:RTEL1}	PRECISE	5to3	ZGPAT (NM_032527) - RTEL1 (NM_032957) rearrangement: c.584+7574:ZGPAT_c.1950+85:RTEL1dup	yes	unknown	27520	22996	51062	0	4
P-0020953-T01-IM6	SOMATIC	ZNF143	ATM	11	11	9510608	108100012	Intron of ZNF143(+):6Kb before exon 8	Exon 4 of ATM(+)		GRCh37	DUPLICATION	10	22	Protein Fusion: mid-exon  {ATM:ZNF143}	PRECISE	5to3	ATM (NM_000051) - ZNF143 (NM_003442) rearrangement: c.293:ATM_c.646-5585:ZNF143dup	yes	unknown	98589404	397183	445423	0	26
P-0008920-T01-IM5	SOMATIC	ZNF207	BRAF	17	7	30687533	140485847	Intron of ZNF207(+): 84bp before exon 4	Intron of BRAF(-): 2Kb after exon 9		GRCh37	TRANSLOCATION	23	97	Protein fusion: in frame (ZNF207-BRAF)	PRECISE	3to3	ZNF207 (NM_001098507) - BRAF (NM_004333) rearrangement: t(7;17)(q34;q11.2)(chr7:g.140485847::chr17:g.30687533)	yes	unknown	0	0	0	0	96
P-0028701-T01-IM6	SOMATIC	ZNF276	FANCA	16	16	89796570	89871704	Intron of ZNF276(+):844bp after exon 6	Exon 7 of FANCA(-)		GRCh37	DELETION	10	37	Antisense Fusion	PRECISE	3to5	FANCA (NM_000135) rearrangement: c.693:FANCA_chr16:g.89796570del	yes	unknown	75134	53127	51079	0	37
P-0046600-T01-IM6	SOMATIC	ZNF277	MET	7	7	111889264	116409708	Intron of ZNF277(+):38Kb before exon 2	Exon 12 of MET(+)		GRCh37	DELETION	7	8	Protein Fusion: mid-exon  {ZNF277:MET}	PRECISE	3to5	ZNF277 (NM_021994) - MET (NM_000245) fusion: c.92-37664:ZNF277_c.2593:METdel	yes	unknown	4520444	21312	19324	0	8
P-0017653-T01-IM5	SOMATIC	ZNF284	POLD1	19	19	44581714	50912201	Intron of ZNF284(+):1Kb after exon 2	Intron of POLD1(+):43bp after exon 15		GRCh37	DUPLICATION	10	4	Protein Fusion: out of frame  {POLD1:ZNF284}	PRECISE	5to3	POLD1 (NM_002691) - ZNF284 (NM_001037813) rearrangement: c.1892+43: POLD1_c.15+1157: ZNF284dup	yes	unknown	6330487	60445	77051	0	4
P-0010904-T01-IM5	SOMATIC	ZNF335	GNAS	20	20	44592701	57485137	Intron of ZNF335(-): 72bp before exon 8	Intron of GNAS(+): 1bp after exon 11		GRCh37	INVERSION	55	66	Protein fusion: in frame (GNAS-ZNF335)	PRECISE	3to3	GNAS (NM_000516) -  ZNF335 (NM_022095) Rearrangement :  c.970+1:GNAS_c.1103-72:ZNF335inv	yes	unknown	12892436	206494	254964	0	64
P-0039808-T01-IM6	SOMATIC	ZNF532	MALT1	18	18	56412786	56617548	Intron of MALT1(+):111bp before exon 16	Intron of ZNF532(+):2Kb after exon 7		GRCh37	DUPLICATION	9	24	Protein Fusion: in frame  {ZNF532:MALT1}	PRECISE	5to3	ZNF532 (NM_018181) - MALT1 (NM_006785) rearrangement: c.2868+2087:ZNF532_c.1912-112:MALT1dup	yes	unknown	204762	5209	5419	0	24
P-0064103-T01-IM7	SOMATIC	ZNF568	AXL	19	19	37415450	41758567	Intron of ZNF568(+):651bp before exon 4	Intron of AXL(+):183bp before exon 16		GRCh37	DELETION	10	3	Protein Fusion: in frame  {ZNF568:AXL}	PRECISE	3to5	ZNF568 (NM_198539) - AXL (NM_021913) rearrangement: c.77-652:ZNF568_c.1805-184:AXLdel	yes	unknown	4343117	82939	85354	0	4
P-0029758-T01-IM6	SOMATIC	ZNF700	DNAJB1	19	19	12044108	14627327	Intron of ZNF700(+):8Kb after exon 1	Exon 2 of DNAJB1(-)		GRCh37	INVERSION	10	106	Protein Fusion: mid-exon  {DNAJB1:ZNF700}	PRECISE	5to5	DNAJB1 (NM_006145) - ZNF700 (NM_144566) rearrangement: c.743:DNAJB1_c.63+8020:ZNF700inv	yes	unknown	2583219	14670	24488	0	171
P-0017761-T01-IM6	SOMATIC	ZNF770	NUTM1								GRCh37				ZNF770-NUTM1 Fusion - Archer			POSITIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANEL: ZNF770-NUTM1 fusion. Note: The rearrangement is a fusion between genes ZNF770 Exon2 (NM_014106) and NUTM1 Exon2 (NM_175741).	yes	unknown					
P-0019819-T02-IM6	SOMATIC	ZNRF3	EWSR1	22	22	29441077	29684597	Intron of ZNRF3(+):199bp after exon 5	Exon 9 of EWSR1(+)		GRCh37	DUPLICATION	10	25	Protein Fusion: mid-exon  {EWSR1:ZNRF3}	PRECISE	5to3	EWSR1 (NM_013986) - ZNRF3 (NM_001206998) rearrangement: c.793+1474:EWSR1_c.744+199:ZNRF3dup	yes	unknown	243520	8336	14442	0	29
P-0079650-T01-IM7	SOMATIC	ZNRF3	C2	22	6	29445210	31878353	Exon 8 of ZNRF3(+)	Intron of C2(+):9Kb after exon 1		GRCh37	TRANSLOCATION	0	12	Protein Fusion: mid-exon  {ZNRF3:C2}	IMPPRECISE	3to5	ZNRF3 (NM_001206998) - C2 (NM_001178063) rearrangement: t(6;22)(p21.33;q12.1)(chr6:g.31878353::chr22:g.29445210)	yes	unknown	0	0	0	0	12
P-0075205-T01-IM7	SOMATIC	ZNRF3	KREMEN1	22	22	29446633	29508911	Exon 8 of ZNRF3(+)	Intron of KREMEN1(+):8Kb before exon 4		GRCh37	INVERSION	10	18	ZNRF3-intragenic	PRECISE	5to5	ZNRF3 (NM_001206998) rearrangement: c.2464:ZNRF3_chr22:g.29508911inv	yes	unknown	62278	2536	2717	0	18
P-0073984-T01-IM7	SOMATIC	ZNRF3		22	22	29247410	29442727	IGR: 32Kb before ZNRF3(+)	Exon 6 of ZNRF3(+)		GRCh37	INVERSION			ZNRF3-intragenic	PRECISE	5to5	ZNRF3 (NM_001206998): rearrangement: g.29247410_c.768inv			195317	10766	13674	0	3
P-0051867-T01-IM6	SOMATIC	ZRSR2	ZRSR2	X	X	15815003	15827409	Intron of ZRSR2(+):3Kb before exon 3	Exon 7 of ZRSR2(+)		GRCh37	DELETION	10	15	Deletion within transcript : mid-exon	PRECISE	3to5	ZRSR2 (NM_005089) rearrangement: c.122-2992_c.525del	yes	unknown	12406	4694	12421	0	16
P-0059443-T01-IM7	SOMATIC	ZRSR2	ZNF804A	X	2	15808580	186012111	5-UTR of ZRSR2(+):38bp before coding start	IGR: 549Kb before ZNF804A(+)		GRCh37	TRANSLOCATION	10	10	ZRSR2-intragenic	PRECISE	5to5	ZRSR2 (NM_005089) rearrangement: t(2;X)(q31.2;p22.2)(chr2:g.186012111::chrX:g.15808580)	yes	unknown	0	0	0	0	14
P-0076134-T01-IM7	SOMATIC	ZYG11B	NTRK1	1	1	53282489	156835688	Intron of ZYG11B(+):188bp after exon 13	Intron of NTRK1(+):1Kb before exon 4		GRCh37	DELETION	10	36	Protein Fusion: out of frame  {ZYG11B:NTRK1}	PRECISE	3to5	ZYG11B (NM_024646) - NTRK1 (NM_002529) fusion: c.2044+188:ZYG11B_c.360-1014:NTRK1del	yes	unknown	103553199	535464	746890	0	39
P-0019761-T01-IM6	SOMATIC	ZZZ3	FUBP1	1	1	78133823	78433745	5-UTR of ZZZ3(-):102Kb before coding start	Intron of FUBP1(-):103bp after exon 3		GRCh37	DELETION	6	4	Transcript Fusion {FUBP1:ZZZ3}	PRECISE	3to5	FUBP1 (NM_003902) - ZZZ3 (NM_015534) rearrangement: c.250+104:FUBP1_c.-403+14447:ZZZ3del	yes	unknown	299922	18248	6866	0	4
