Sample_Id	SV_Status	Site1_Hugo_Symbol	Site2_Hugo_Symbol	Site1_Chromosome	Site2_Chromosome	Site1_Position	Site2_Position	Site1_Description	Site2_Description	NCBI_Build	Class	Annotation	Breakpoint_Type	Comments	Confidence_Class	Connection_Type	Event_Info	SV_Length	Mapq	Normal_Variant_Count	Paired_End_Read_Support	Split_Read_Support	Tumor_Variant_Count
P-0012206-T01-IM5	SOMATIC	BRD4	BRD4	19	19	15353806	15378569	Exon 14 of BRD4(-)	Intron of BRD4(-): 207bp before exon 4	GRCh37	DELETION	BRD4 (NM_058243) rearrangement:c.424-207_ c.3074del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	24763	NA	0	41	41	40
P-0013268-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44858008	44949928	Intron of KDM6A(+): 12Kb before exon 5	Intron of KDM6A(+): 40bp before exon 26	GRCh37	DELETION	KDM6A (NM_021140) Rearrangement : c.385-12198_3737-40del	PRECISE		MANUAL_OK	3to5	Deletion of 21 exons: out of frame	91920	NA	0	20	9	12
P-0010758-T01-IM5	SOMATIC	EP300	EP300	22	22	41568721	41571185	Intron of EP300(+): 54bp after exon 28	Intron of EP300(+): 1Kb before exon 30	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.4617+54_c.4780-1066del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2464	NA	0	33	32	32
P-0014271-T01-IM6	SOMATIC	RB1	WBSCR27	13	7	48881486	73260966	Exon 2 of RB1(+)	IGR: 4Kb after WBSCR27(-)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(7;13)(q11.23;q14.2)(chr7:g.73260966::chr13:g.48881486)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	34	31
P-0014271-T01-IM6	SOMATIC	BCL2	SALL3	18	18	60985819	76254107	Exon 2 of BCL2(-)	IGR: 486Kb before SALL3(+)	GRCh37	INVERSION	BCL2 (NM_000633) rearrangement: c.81:BCL2_chr18:g.76254107inv	PRECISE		MANUAL_OK	5to5	-	15268288	NA	0	37	80	27
P-0014470-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78617546	78621655	Exon 3 of RPTOR(+)	Intron of RPTOR(+): 4Kb after exon 3	GRCh37	DUPLICATION	RPTOR (NM_020761) Rearrangement :  c.284_c.348+4045dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	4109	NA	0	16	33	16
P-0011577-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864690	42867016	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 511bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-511:TMPRSS2_c.40-47146:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002326	NA	0	17	23	17
P-0012253-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157099320	157219987	Exon 1 of ARID1B(+)	Intron of ARID1B(+): 3Kb before exon 4	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.83_c.1777-2523del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	120667	NA	0	10	23	7
P-0012841-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57487686	57493582	Intron of NAB2(+): 305bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 with STAT6 exons 15-22) : c.1468+305:NAB2_c.1712:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	5896	NA	0	102	102	109
P-0013595-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55207443	55223363	Intron of EGFR(+): 3Kb before exon 2	Intron of EGFR(+): 160bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2536_c.890-160del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	15920	NA	0	56	57	55
P-0011571-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151943009	151949163	Intron of MLL3(-): 2Kb after exon 14	Exon 11 of MLL3(-)	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement : c.1482_2532+1978dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6154	NA	0	13	21	12
P-0010970-T01-IM5	SOMATIC	EPHB1	GMPS	3	3	134885825	155632582	Exon 9 of EPHB1(+)	Intron of GMPS(+): 223bp after exon 8	GRCh37	DUPLICATION	GMPS (NM_003875) - EPHB1 (NM_004441) Rearrangement :  c.1038+223:GMPS_c.1736:EPHB1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (GMPS-EPHB1)	20746757	NA	0	37	51	37
P-0011443-T01-IM5	SOMATIC	BAP1	BAP1	3	3	52442168	52443625	Intron of BAP1(-): 75bp before exon 5	Intron of BAP1(-): 1bp before exon 3	GRCh37	DELETION	BAP1 (NM_004656) rearrangement : c.68-1_256-75del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: out of frame	1457	NA	0	8	17	8
P-0013956-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32912067	32914761	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_00005) rearrangement: c.3575_c.6269inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	2694	NA	1	74	86	72
P-0014576-T01-IM6	SOMATIC	DNAH9	MAP2K4	17	17	11611081	12044545	Intron of DNAH9(+): 3Kb after exon 26	Exon 11 of MAP2K4(+)	GRCh37	INVERSION	DNAH9 (NM_001372) - MAP2K4 (NM_003010) rearrangement: c.5552+2579:DNAH9_c.1168:MAP2K4inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	433464	NA	0	58	75	58
P-0012116-T01-IM5	SOMATIC	NBN	CWH43	8	4	90965856	49069963	Exon 11 of NBN(-)	IGR: 6Kb after CWH43(+)	GRCh37	TRANSLOCATION	NBN (NM_002485) Rearrangement : t(4,8)(p11,q21.3)(chr4:g.131062050::chr8:g.143130066)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	30	0	24
P-0011098-T01-IM5	SOMATIC	MMP16	SPEN	8	1	89816597	16259712	IGR: 477Kb after MMP16(-)	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;8)(p36.13;q21.3)(chr1:g.16259712::chr8:g.89816597)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	101	20	99
P-0014809-T01-IM6	SOMATIC	EIF4A2	RFC4	3	3	186505084	186510598	Intron of EIF4A2(+): 31bp after exon 8	Exon 6 of RFC4(-)	GRCh37	DELETION	EIF4A2 (NM_001967) - RFC4 (NM_002916) rearrangement: c.909+31:EIF4A2_c.549:RFC4del	PRECISE		MANUAL_OK	3to5	Antisense fusion	5514	NA	0	11	14	11
P-0013732-T01-IM5	SOMATIC	PRKAR1A	UTRN	17	6	66526189	144894222	Intron of PRKAR1A(+): 47bp after exon 10	Intron of UTRN(+): 4Kb before exon 50	GRCh37	TRANSLOCATION	PRKAR1A (NM_212471) rearrangement: t(6;17)(q24.2;q24.2)(chr6:g.144894222::chr17:g.66526189)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	47	20	39
P-0012110-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52584306	52611167	Intron of PBRM1(-): 131bp after exon 29	Intron of PBRM1(-): 453bp before exon 23	GRCh37	DUPLICATION	PBRM1 (NM_018313) Rearrangement :  c.4576+131_c.3459-453dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons: out of frame	26861	NA	0	5	6	4
P-0015015-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861551	42868021	Intron of ERG(-): 9Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11) : c.127-1516:TMPRSS2_c.40-44007:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3006470	NA	0	5	11	5
P-0013271-T01-IM5	SOMATIC	PDGFRB	CAMK2A	5	5	149509311	149651101	Intron of PDGFRB(-): 9bp after exon 10	Intron of CAMK2A(-): 2Kb after exon 2	GRCh37	DUPLICATION	PDGFRB (NM_002609) - CAMK2A (NM_015981)  rearrangement: c.1579+9:PDGFRB_c.157+1527:CAMK2Adup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (PDGFRB-CAMK2A)	141790	NA	0	22	31	22
P-0012667-T01-IM5	SOMATIC	USP4	MST1R	3	3	49340684	49934187	Intron of USP4(-): 709bp before exon 9	Exon 8 of MST1R(-)	GRCh37	DELETION	MST1R (NM_002447) - USP4 (NM_003363) Rearrangement : c.2320:MST1R_c.1129-709:USP4del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MST1R-USP4)	593503	NA	0	67	67	60
P-0012686-T01-IM5	SOMATIC	CD79B	TTLL7	17	1	62006794	83413489	Exon 4 of CD79B(-)	IGR: 922Kb before TTLL7(-)	GRCh37	TRANSLOCATION	CD79B (NM_001039933) rearrangement: t(1;17)(p31.1;q23.2)(chr1:g.83413489::chr17:g.62006794)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	49	0	44
P-0008764-T02-IM6	SOMATIC	KIF5B	ALK	10	2	32305750	29448327	Intron of KIF5B(-): 321bp after exon 24	Exon 19 of ALK(-)	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - ALK (NM_004304) Fusion (KIF5B exons 1-24 fused with ALK exons 19-29) : t(2;10)(p23.2;p11.22)(chr2:g.29448327::chr10:g.:32305750)	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (KIF5B-ALK)	0	NA	0	18	6	17
P-0012153-T01-IM5	SOMATIC	NAP1L2	ATRX	X	X	72499356	76875909	IGR: 67Kb before NAP1L2(-)	Exon 20 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: chrX:g.72499356_c.5226inv	PRECISE		MANUAL_OK	5to5	-	4376553	NA	0	17	42	17
P-0012377-T01-IM5	SOMATIC	EWSR1	AP1B1	22	22	29693908	29785920	Exon 12 of EWSR1(+)	Promoter of AP1B1(-): 1Kb from tx start	GRCh37	DUPLICATION	EWSR1(NM_013986) - AP1B1 (NM_001127) rearrangement: c.1167:EWSR1_c.-1535:AP1B1dup	PRECISE		MANUAL_OK	5to3	-	92012	NA	0	4	9	3
P-0010948-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21974604	22028649	Exon 1 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 92Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement : c.194-3397_chr9:g.22028649del CDKN2Ap16INK4A (NM_000077) rearrangement : c.150+73_chr9:g.22028649del	PRECISE		MANUAL_OK	3to5	-	54045	NA	0	102	104	114
P-0012244-T01-IM5	SOMATIC	MLL2	RGMB	12	5	49446839	97871753	Exon 8 of MLL2(-)	IGR: 233Kb before RGMB(+)	GRCh37	TRANSLOCATION	MLL2 (NM_003482) Rearrangement : t(5;12)(q15;q13.12)(chr5:g.97871753::chr12:g.49446839)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	55	40	55
P-0014395-T01-IM6	SOMATIC	TMPRSS2	ARHGAP26	21	5	42868024	142324441	Intron of TMPRSS2(-): 2Kb before exon 3	Intron of ARHGAP26(+): 13Kb after exon 11	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ARHGAP26 (NM_015071) fusion (TMPRSS2 exons 1-2 fused in-frame to ARHGAP26 exons 12-23): t(5;21)(q31.3;q22.3)(chr5:g.142324441::chr21:g.42868024)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (TMPRSS2-ARHGAP26)	0	NA	0	24	31	24
P-0012909-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11152113	11152895	Exon 28 of SMARCA4(+)	Intron of SMARCA4(+): 659bp after exon 28	GRCh37	DELETION	SMARCA4 (NM_003072) Rearrangement : c.4301_4424+659del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	782	NA	0	8	0	8
P-0012596-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11143782	11144472	Intron of SMARCA4(+): 184bp before exon 25	Exon 27 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.3547-184_c.3804dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	690	NA	0	16	25	14
P-0011390-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55153211	55222606	Intron of EGFR(+): 57Kb before exon 2	Intron of EGFR(+): 761bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII rearrangement: c.89-56768_c.889+761del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	69395	NA	0	102	765	1921
P-0014433-T01-IM6	SOMATIC	TUSC1	TEK	9	9	26051888	27173217	IGR: 375Kb before TUSC1(-)	Intron of TEK(+): 3bp before exon 6	GRCh37	INVERSION	TEK (NM_000459) rearrangement: c.761-3_chr9:g.26051888inv	PRECISE		MANUAL_OK	5to5	-	1121329	NA	0	91	86	90
P-0012623-T01-IM5	SOMATIC	MGA	CACNA1B	15	9	42041234	140896610	Intron of MGA(+): 75bp before exon 16	Intron of CACNA1B(+): 5Kb before exon 16	GRCh37	TRANSLOCATION	CACNA1B (NM_000718) - MGA (NM_001164273) Rearrangement : t(9;15)(q22.3;p11.1)(chr9:g.140896610::chr15:g.42041234)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (CACNA1B-MGA)	0	NA	0	34	0	33
P-0014090-T01-IM5	SOMATIC	LGALS13	SPEN	19	1	40096336	16257974	Intron of LGALS13(+): 308bp after exon 3	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	LGALS13 (NM_013268) SPEN (NM_015001) rearrangement: t(1;19)(p36.13;q13.2)(chr1:g.16257974::chr19:g.40096336)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LGALS13-SPEN)	0	NA	0	21	14	19
P-0014090-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5090562	5092253	Exon 21 of JAK2(+)	Intron of JAK2(+): 1Kb after exon 22	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.2878_c.3059+1342del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1691	NA	0	41	53	39
P-0011259-T01-IM5	SOMATIC	GFRA2	EIF4E	8	4	21254285	99849955	IGR: 295Kb before GFRA2(-)	Intron of EIF4E(-): 91bp after exon 1	GRCh37	TRANSLOCATION	EIF4E (NM_001130678) Rearrangement : t(4;8)(q23;p21.3)(chr4:g.99849955::chr8:g.21254285)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	6	13
P-0014631-T01-IM6	SOMATIC	AKT2	LTBP4	19	19	40743955	41130734	Exon 9 of AKT2(-)	Intron of LTBP4(+): 747bp after exon 29	GRCh37	DELETION	AKT2 (NM_001626)  rearrangement: c.752:AKT2_c.4032+747:LTBP4del	PRECISE		MANUAL_OK	3to5	-	386779	NA	0	39	85	39
P-0013660-T01-IM5	SOMATIC	ATM	NCAM1	11	11	108206582	112801427	Exon 56 of ATM(+)	IGR: 31Kb before NCAM1(+)	GRCh37	DELETION	ATM (NM_000051) Rearrangement : c.8162_chr11:g.112801427del	PRECISE		MANUAL_OK	3to5	-	4594845	NA	0	8	18	8
P-0013443-T01-IM5	SOMATIC	KDR	SRD5A3	4	4	55964062	56104211	Intron of KDR(-): 129bp before exon 18	IGR: 108Kb before SRD5A3(+)	GRCh37	DELETION	KDR (NM_002253) rearrangement: c.2510-129:KDR_chr4:g.56104211del	PRECISE		MANUAL_OK	3to5	-	140149	NA	0	16	15	9
P-0013746-T02-IM5	SOMATIC	EWSR1	FLI1	22	11	29688263	128644899	Intron of EWSR1(+): 105bp after exon 9	Intron of FLI1(+): 2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-11 fused to FLI1 exons 5 - 9): t(11;22)(q24.3;q12.2)(chr11:g.28644899::chr22:g.29688263)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	21	21	16
P-0012794-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55133838	55221933	Intron of EGFR(+): 47Kb after exon 1	Intron of EGFR(+): 88bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+46780_c.889+88del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	88095	NA	0	102	119	156
P-0012794-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55269484	55271945	Intron of EGFR(+): 9bp after exon 26	Intron of EGFR(+): 1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3162+9_c.3272-1004del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	2461	NA	0	102	310	735
P-0011135-T01-IM5	SOMATIC	PIK3C2G	PIK3C2G	12	12	18747348	18757880	Intron of PIK3C2G(+): 80bp before exon 29	Intron of PIK3C2G(+): 5Kb before exon 30	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement : c.3889-80_3965-4589inv	PRECISE		MANUAL_OK	5to5	-	10532	NA	0	31	23	30
P-0014414-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39896126	42872504	Intron of ERG(-): 51Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRRS2 (NM_001135099) rearrangement: c.39+51460:ERG_c.56-2388:TMPRRS2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (ERG-TMPRSS2)	2976378	NA	0	84	87	77
P-0014077-T01-IM5	SOMATIC	CBX6	EP300	22	22	39268126	41527489	Intron of CBX6(-): 1bp after exon 1	Exon 6 of EP300(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: chr22:g.39268126_c.1380:EP300del	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EP300-CBX6)	2259363	NA	0	10	46	10
P-0014732-T01-IM6	SOMATIC	NEDD8	BAP1	14	3	24689227	52444003	Intron of NEDD8(-): 2Kb before exon 2	5-UTR of BAP1(-): 109bp before coding start	GRCh37	TRANSLOCATION	NEDD8 (NM_001199823) - BAP1 (NM_004656) rearrangement: t(3;14)(p21.1;q12)(chr3:g.52444003::chr14:g.24689227)	IMPRECISE		MANUAL_OK	5to3	Transcript fusion (NEDD8-BAP1)	0	NA	0	5	0	3
P-0014732-T01-IM6	SOMATIC	DOK6	PBRM1	18	3	67099152	52692284	Intron of DOK6(+): 31Kb after exon 1	Exon 6 of PBRM1(-)	GRCh37	TRANSLOCATION	DOK6 (NM_152721) - PBRM1 (NM_018313) rearrangement: t(3;18)(p21.1;q22.2)(chr3:g.52692284::chr18:g.67099152)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (DOK6-PBRM1)	0	NA	0	17	8	17
P-0014732-T01-IM6	SOMATIC	CDCP1	PIK3CB	3	3	45114508	138423276	IGR: 9Kb before CDCP1(-)	Intron of PIK3CB(-): 9bp after exon 10	GRCh37	DELETION	PIK3CB (NM_006219) rearrangement: chr3:g.45114508_c.1581+9del	PRECISE		MANUAL_OK	3to5	-	93308768	NA	0	22	30	22
P-0013451-T01-IM5	SOMATIC	ROS1	STX7	6	6	117649456	132800212	Intron of ROS1(-): 1Kb after exon 32	Intron of STX7(-): 3Kb before exon 3	GRCh37	DELETION	STX7 (NM_003569) - ROS1 (NM_002944) rearrangement: c.86-3411:STX7_c.5366+1036:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (STX7-ROS1)	15150756	NA	0	102	211	437
P-0010320-T01-IM5	SOMATIC	STK11	STK11	19	19	1220274	1224469	Intron of STK11(+): 98bp before exon 4	Intron of STK11(+): 1Kb after exon 8	GRCh37	DUPLICATION	STK11 (NM_000455) Rearrangement :  c.465-98_1108+1298dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	4195	NA	0	25	22	24
P-0013182-T01-IM5	SOMATIC	CTCF	CTCF	16	16	67649540	67654670	Intron of CTCF(+): 1Kb before exon 5	Exon 6 of CTCF(+)	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.953-1108_c.1157dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5130	NA	0	23	29	23
P-0010994-T01-IM5	SOMATIC	EWSR1	MTMR3	22	22	29686069	30356897	Intron of EWSR1(+): 333bp before exon 9	5-UTR of MTMR3(+): 10Kb before coding start	GRCh37	DUPLICATION	MTMR3 (NM_021090) - EWSR1 (NM_013986) rearrangement: c.-85+3820:MTMR3_c.992+1294:EWSR1dup	PRECISE		MANUAL_OK	5to3	Transcript fusion (MTMR3-EWSR1)	670828	NA	0	20	23	20
P-0011215-T01-IM5	SOMATIC	C22orf43	SMARCB1	22	22	23957968	24159074	Intron of C22orf43(-): 1Kb after exon 8	Exon 6 of SMARCB1(+)	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.541+1072:C22orf43_c.746:SMARCB1del	PRECISE		MANUAL_OK	3to5	-	201106	NA	0	37	32	35
P-0014992-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864986	42877448	Intron of ERG(-): 5Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.55+2429:TMPRSS2_c.18+5301:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3012462	NA	0	8	15	8
P-0012314-T01-IM5	SOMATIC	TET1	TET1	10	10	70300263	70333832	IGR: 20Kb before TET1(+)	Exon 2 of TET1(+)	GRCh37	DUPLICATION	TET1 (NM_030625) rearrangement: chr10:g.70300263_c.1737:TET1dup	PRECISE		MANUAL_OK	5to3	-	33569	NA	0	27	38	26
P-0014191-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138537335	140492679	Intron of KIAA1549(-): 320bp before exon 17	Intron of BRAF(-): 1Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion : c.5248-320: KIAA1549_c.1140+1429:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1955344	NA	0	57	51	56
P-0014460-T01-IM6	SOMATIC	CTNNB1	FAM198A	3	3	41274795	43056219	Intron of CTNNB1(+): 37bp before exon 8	Intron of FAM198A(+): 18Kb before exon 2	GRCh37	INVERSION	CTNNB1 (NM_001904) Rearrangement : c.1082-37:CTNNB1_c.4-17540:FAM198inv	PRECISE		MANUAL_OK	5to5	-	1781424	NA	0	21	28	21
P-0001204-T03-IM5	SOMATIC	APC	APC	5	5	112179446	112183450	Exon 16 of APC(+)	IGR: 2Kb after APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement : c.8155_g.112183450del	PRECISE		MANUAL_OK	3to5	-	4004	NA	0	72	76	71
P-0012923-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684108	32416554	Intron of EWSR1(+): 487bp before exon 7	Intron of WT1(-): 1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 with WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416554::chr22:g.29684108)	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	7	0	4
P-0011002-T01-IM5	SOMATIC	LATS2	LATS2	13	13	21549704	21555836	Intron of LATS2(-): 201bp before exon 8	Intron of LATS2(-): 49bp before exon 6	GRCh37	DUPLICATION	LATS2 (NM_014572) rearrangement: c.2483-49_c.2773-201dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: out of frame	6132	NA	0	12	11	12
P-0011198-T01-IM5	SOMATIC	TMPRSS2	ETV5	21	3	42867761	185827438	Intron of TMPRSS2(-): 1Kb before exon 3	Promoter of ETV5(-): 537bp from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) rearrangement : t(3;21)(q27.2;q22.3)(chr3:g.185827438::chr21:g.42867761)	IMPRECISE		MANUAL_OK	5to3	Transcript fusion (TMPRSS2-ETV5)	0	NA	0	13	0	13
P-0011343-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11107003	11112038	Exon 9 of SMARCA4(+)	Intron of SMARCA4(+): 2Kb before exon 11	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.1708_c.1813-1667dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5035	NA	0	8	6	7
P-0011343-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117868887	117873952	Exon 7 of RAD21(-)	Intron of RAD21(-): 128bp after exon 4	GRCh37	DUPLICATION	RAD21 (NM_006265) rearrangement: c.374+128_c.812dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5065	NA	0	5	6	5
P-0011542-T01-IM5	SOMATIC	CNTN1	MLL2	12	12	41389365	49437578	Intron of CNTN1(+): 2Kb after exon 17	Intron of MLL2(-): 13bp before exon 23	GRCh37	INVERSION	MLL2 (NM_003482) - CNTN1 (NM_001843) rearrangement: c.5320-13:MLL2_c.2113+2294:CNTN1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (MLL2-CNTN1)	8048213	NA	0	47	44	43
P-0012731-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89692794	89697381	Exon 5 of PTEN(+)	Intron of PTEN(+): 4Kb after exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.278_c.492+4373del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4587	NA	0	17	45	17
P-0013277-T01-IM5	SOMATIC	AKAP11	FH	13	1	42830282	241665743	IGR: 16Kb before AKAP11(+)	Exon 8 of FH(-)	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241665743::chr13:g.42830282)	IMPRECISE		MANUAL_OK	5to5	-	0	NA	0	38	0	28
P-0010977-T01-IM5	SOMATIC	TFE3	ASPSCR1	X	17	48895466	79959249	Intron of TFE3(-): 69bp after exon 5	Intron of ASPSCR1(+): 5Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 with TFE3 exons 6-10) : t(X;17)(p11.23;q25.3)(chrX:g.48895466::chr17:g.79959249)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ASPSCR1-TFE3)	0	NA	0	18	30	18
P-0012513-T01-IM5	SOMATIC	NUP35	PMS1	2	2	183973880	190708775	IGR: 15Kb before NUP35(+)	Exon 6 of PMS1(+)	GRCh37	INVERSION	PMS1 (NM_000534) rearrangement: chr2:g.183973880_c.668:PMS1del	PRECISE		MANUAL_OK	3to3	-	6734895	NA	0	10	20	6
P-0010742-T01-IM5	SOMATIC	PRMT8	APC	12	5	3608058	112175904	Intron of PRMT8(+): 7Kb after exon 1	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) - PRMT8 (NM_019854) rearrangement : t(5;12)(q22.2;p12.32)(chr5:g.112175904::chr12:g.3608058)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (APC-PRMT8)	0	NA	0	16	0	15
P-0002620-T02-IM5	SOMATIC	BCOR	TRAP1	X	16	39932722	3760214	Exon 4 of BCOR(-)	Intron of TRAP1(-): 7Kb after exon 1	GRCh37	TRANSLOCATION	BCOR (NM_001123385) -TRAP1 (NM_016292) Rearrangement  : t(16;X)(p13.3;p11.4)(chr16:g.3760214::chrX:g.39932722)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (BCOR-TRAP1)	0	NA	0	102	0	100
P-0014498-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76764118	76922693	Intron of ATRX(-): 11bp before exon 35	Intron of ATRX(-): 2Kb before exon 11	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.3810-2426_c.7201-11del	PRECISE		MANUAL_OK	3to5	Deletion of 24 exons: out of frame	158575	NA	0	50	46	47
P-0012925-T01-IM5	SOMATIC	TP53	TP53	17	17	7579480	7581627	Exon 4 of TP53(-)	5-UTR of TP53(-): 2Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-1687_c.207del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2147	NA	0	14	16	14
P-0011350-T01-IM5	SOMATIC	APC	REEP5	5	5	112167418	112213830	Intron of APC(+): 3Kb after exon 14	3-UTR of REEP5(-): 653bp after coding stop	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.1743+2749:APC_chr5:g.112213830inv	PRECISE		MANUAL_OK	3to3	-	46412	NA	0	12	13	9
P-0008577-T02-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89383400	89500746	Exon 3 of ANKRD11(-)	5-UTR of ANKRD11(-): 117Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.-144-15970_c.28del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	117346	NA	0	13	29	13
P-0014202-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39870228	42869590	Intron of ERG(-): 59bp after exon 1	Intron of TMPRSS2(-): 456bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame to ERG exons 2-10): c.126+456:TMPRSS2_c.18+59:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2999362	NA	0	19	22	19
P-0013489-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57487506	57493669	Intron of NAB2(+): 125bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6(NM_003153) Fusion (NAB2 exons 1 to 6 fused with STAT6 exons 15 to 22) : c.1468+125:NAB2_c.1625:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	6163	NA	0	26	67	26
P-0010789-T01-IM5	SOMATIC	DNMT1	DNMT1	19	19	10269572	10305504	Intron of DNMT1(-): 762bp after exon 17	Exon 1 of DNMT1(-)	GRCh37	DUPLICATION	DNMT1 (NM_001379) rearrangement : c.72_1232+762dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	35932	NA	0	10	16	10
P-0013109-T01-IM5	SOMATIC	EP300	EP300	22	22	41559717	41565519	Intron of EP300(+): 340bp before exon 22	Exon 26 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3729-340_c.4185del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5802	NA	0	37	44	36
P-0014193-T01-IM6	SOMATIC	STYK1	RECQL	12	12	10774326	21644464	Intron of STYK1(-): 149bp after exon 10	Exon 3 of RECQL(-)	GRCh37	DELETION	RECQL (NM_032941) -STYK1 (NM_018423) Rearrangement : c.203RECQL_c.1064+149:STYK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RECQL-STYK1)	10870138	NA	0	59	59	59
P-0014759-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55209241	55222156	Intron of EGFR(+): 738bp before exon 2	Intron of EGFR(+): 311bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intrangenic deletion: c.89-738_c.889+311del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	12915	NA	0	86	82	85
P-0013601-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685257	128664219	Intron of EWSR1(+): 482bp after exon 7	Intron of FLI1(+): 11Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 fused with FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128664219::chr22:g.29685257)	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	5	0	5
P-0003101-T03-IM5	SOMATIC	AR	AR	X	X	66937328	66944653	Exon 5 of AR(+)	IGR: 534bp after AR(+)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2182_c.*970del	PRECISE		MANUAL_OK	3to5	-	7325	NA	0	22	49	22
P-0012175-T01-IM5	SOMATIC	IGF2	PARVA	11	11	2161426	12410857	Exon 2 of IGF2(-)	Intron of PARVA(+): 12Kb after exon 1	GRCh37	INVERSION	PARVA (NM_018222) -  IGF2 (NM_001127598) Rearrangement : c.256+11527:PARVA_c.101:IGF2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (PARVA-IGF2)	10249431	NA	0	98	74	98
P-0012175-T01-IM5	SOMATIC	INTS2	IGF2	17	11	60005030	2161447	Intron of INTS2(-): 266bp after exon 1	Exon 2 of IGF2(-)	GRCh37	TRANSLOCATION	IGF2 (NM_001127598)  - INTS2 (NM_020748) Rearrangement : t(11,17)(p15.5,q23.1)(chr11:g.2161447::chr17:g.60005030)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (IGF2-INTS2)	0	NA	0	77	22	76
P-0001879-T02-IM5	SOMATIC	JAK1	ZNF678	1	1	65303788	227581450	Intron of JAK1(-): 1bp before exon 22	IGR: 170Kb before ZNF678(+)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.2968-1_chr1:g.27581450del	PRECISE		MANUAL_OK	3to5	-	162277662	NA	0	25	23	24
P-0011213-T01-IM5	SOMATIC	KIAA0087	INHBA	7	7	26572395	41739569	IGR: 345bp before KIAA0087(-)	Intron of INHBA(-): 16bp after exon 2	GRCh37	INVERSION	INHBA (NM_002192) rearrangement: chr7:g.26572395 _c.388+16inv	PRECISE		MANUAL_OK	5to5	-	15167174	NA	0	23	63	24
P-0011157-T01-IM5	SOMATIC	TPPP	TERT	5	5	682643	1293416	5-UTR of TPPP(-): 4Kb before coding start	Intron of TERT(-): 12bp after exon 2	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.1573+12:TERT_chr5:g.682643del	PRECISE		MANUAL_OK	3to5	Transcript fusion (TERT-TPPP)	610773	NA	0	8	10	8
P-0012779-T01-IM5	SOMATIC	B2M	B2M	15	15	45003811	45007620	Exon 1 of B2M(+)	Intron of B2M(+): 1bp before exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3809	NA	0	24	43	24
P-0012779-T01-IM5	SOMATIC	B2M	B2M	15	15	45007899	45009802	Exon 2 of B2M(+)	3-UTR of B2M(+): 1Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346_c.*15-3del	PRECISE		MANUAL_OK	3to5	-	1903	NA	0	19	21	19
P-0012555-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875095	42875301	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4576:TMPRSS2_c.-4791:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3000206	NA	0	39	36	37
P-0010086-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156102508	156844436	Intron of LMNA(+): 2Kb before exon 3	Intron of NTRK1(+): 18bp after exon 10	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.514-1686:LMNA_c.1251+18:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (LMNA-NTRK1)	741928	NA	0	32	34	32
P-0013526-T01-IM5	SOMATIC	SPEN	EPHA2	1	1	16259669	16477281	Exon 11 of SPEN(+)	Intron of EPHA2(-): 110bp after exon 2	GRCh37	DUPLICATION	SPEN (NM_015001) Rearrangement : c.6934:SPEN_c.153+110:EPHA2	PRECISE		MANUAL_OK	5to3	-	217612	NA	0	12	11	12
P-0013962-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44903694	44937772	Intron of KDM6A(+): 7Kb after exon 8	Intron of KDM6A(+): 22bp after exon 19	GRCh37	DUPLICATION	KDM6A (NM_021140)  Rearrangement : c.654+6760_c.2938+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons: out of frame	34078	NA	0	16	21	14
P-0013825-T01-IM5	SOMATIC	KIF5B	RET	10	10	32311908	43611520	Exon 16 of KIF5B(-)	Intron of RET(+): 512bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1782:KIF5B_c.2137-512:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (KIF5B-RET)	11299612	NA	0	44	59	41
P-0011219-T01-IM5	SOMATIC	CDKN2C	RNF11	1	1	51439815	51734475	Exon 3 of CDKN2C(+)	Intron of RNF11(+): 1Kb before exon 2	GRCh37	DELETION	CDKN2C (NM_078626) - RNF11 (NM_014372) rearrangement: c.380:CDKN2C_c.124-1153:RNF11del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CDKN2C-RNF11)	294660	NA	0	32	28	31
P-0011219-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55182151	55223441	Intron of EGFR(+): 28Kb before exon 2	Intron of EGFR(+): 82bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-27828_c.890-82del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	41290	NA	0	101	426	952
P-0012321-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875961	42868127	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1622:TMPRSS2_c.40-58417:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2992166	NA	0	26	29	23
P-0012679-T01-IM5	SOMATIC	ALK	EML4	2	2	29447466	42525468	Intron of ALK(-): 861bp after exon 19	Intron of EML4(+): 3Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 with ALK exons 20-29): c.1489+2812:EML4_c.3172+861:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13078002	NA	0	102	141	166
P-0012773-T01-IM5	SOMATIC	ATP1B2	TP53	17	17	7552584	7578475	Promoter of ATP1B2(+): 2Kb from tx start	Exon 5 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangment: chr17:g.7552584_c.455:TP53del	PRECISE		MANUAL_OK	3to5	Antisense fusion	25891	NA	0	26	51	26
P-0010266-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14227277	14627607	Intron of PRKACA(-): 1Kb after exon 1	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (mid-exon fusion of DNAJB1 exons 1-2 with PRKACA exons 2-10; one of the breakpoints is within DNAJB1 exon 2): c.463:DNAJB1_c.46+1037:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DNAJB1-PRKACA)	400330	NA	0	23	27	22
P-0011203-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49422270	49424289	Intron of MLL2(-): 341bp after exon 45	Intron of MLL2(-): 67bp before exon 42	GRCh37	DELETION	MLL2 (NM_003482) rearrangement : c.13840-67_14382+341del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: in frame	2019	NA	0	16	12	14
P-0011203-T01-IM5	SOMATIC	ALK	EML4	2	2	29447105	42501193	Intron of ALK(-): 711bp before exon 20	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29)	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13054088	NA	0	46	0	41
P-0010556-T01-IM5	SOMATIC	NTRK3	ZNF710	15	15	88576258	90600115	Exon 13 of NTRK3(-)	5-UTR of ZNF710(+): 10Kb before coding start	GRCh37	INVERSION	NTRK3 (NM_001012338) - ZNF710 (NM_198526) rearrangement: c.-28-10227:ZNF710_c.1415:NTRK3inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ZNF710-NTRK3)	2023857	NA	0	74	60	73
P-0005553-T02-IM5	SOMATIC	BRAF	MRPS33	7	7	140497546	140709829	Intron of BRAF(-): 3Kb after exon 7	Intron of MRPS33(-): 390bp after exon 2	GRCh37	INVERSION	BRAF (NM_004333)  - MRPS33 (NM_053035)Rearrangement :  c.980+2616:BRAF_c.215+390:MRPS33inv	PRECISE		MANUAL_OK	3to3	-	212283	NA	0	9	15	2
P-0011365-T01-IM5	SOMATIC	RARA	COPZ2	17	17	38512373	46105913	Exon 9 of RARA(+)	Intron of COPZ2(-): 37bp before exon 8	GRCh37	DELETION	RARA (NM_000964) - COPZ2 (NM_016429) rearrangement : c.1284:RARA_c.543-37:COPZ2del	PRECISE		MANUAL_OK	3to5	Antisense fusion	7593540	NA	0	82	102	78
P-0014672-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15376375	15380978	Exon 5 of BRD4(-)	Intron of BRD4(-): 1Kb before exon 3	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.639_c.286-1125del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4603	NA	0	8	26	8
P-0002265-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55219816	55221812	Intron of EGFR(+): 423bp before exon 6	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.629-423_856del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1996	NA	0	23	25	23
P-0013673-T01-IM5	SOMATIC	MIR548A1	ARID1B	6	6	18574039	157454285	IGR: 2Kb before MIR548A1(+)	Exon 8 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: chr6:g.18574039_c.2495:ARID1Binv	PRECISE		MANUAL_OK	3to3	-	138880246	NA	0	32	47	31
P-0010494-T01-IM5	SOMATIC	BRAF	GIPC2	7	1	140487276	78571528	Intron of BRAF(-): 72bp after exon 9	Intron of GIPC2(+): 11Kb after exon 3	GRCh37	TRANSLOCATION	GIPC2 (NM_017655) -BRAF (NM_004333)  Rearrangement :  t(1;7)(p31.1;q34)(chr1:g.78571528::chr7:g.140487276)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (GIPC2-BRAF)	0	NA	0	100	43	97
P-0014591-T01-IM6	SOMATIC	EP300	ETV1	22	7	41562739	14022908	Intron of EP300(+): 69bp after exon 23	Intron of ETV1(-): 3Kb after exon 1	GRCh37	TRANSLOCATION	ETV1 (NM_001163147)_EP300 (NM_001429)  rearrangement: t(7;22)(p21.2;q13.2)(chr7:g.14022908::chr22:g.41562739)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EP300-ETV1)	0	NA	0	6	2	6
P-0012910-T01-IM5	SOMATIC	NOTCH1	NOTCH1	9	9	139414058	139466886	Intron of NOTCH1(-): 41bp before exon 5	IGR: 27Kb after NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: chr9:g.139466886_c.743-41del	PRECISE		MANUAL_OK	3to5	-	52828	NA	0	32	40	32
P-0013535-T01-IM5	SOMATIC	TP53	MIR148A	17	7	7579859	25900066	Exon 2 of TP53(-)	IGR: 89Kb before MIR148A(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement :t(7,17)(p15.2,p13.1)(chr7:g.25900066::chr17:g.7579859)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	9	0	8
P-0011148-T01-IM5	SOMATIC	ARID2	MRPS30	12	5	46245800	44601610	Exon 15 of ARID2(+)	IGR: 207Kb before MRPS30(+)	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement : t(5;12)(p12;q12)(chr5:g.44601610::chr12:g.46245800)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	16	0	16
P-0012328-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39823844	42877085	Intron of ERG(-): 6Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.55+2792:TMPRSS2_c.19-6300:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3053241	NA	0	14	20	14
P-0013530-T01-IM5	SOMATIC	ATM	MAP3K2	11	2	108214079	128081097	Exon 57 of ATM(+)	Intron of MAP3K2(-): 381bp after exon 10	GRCh37	TRANSLOCATION	ATM (NM_000051) - MAP3K2 (NM_006609) Rearrangement : t(2,11)(q14.3,q22.3)(chr2:g.128081097::chr11:g.108214079)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ATM-MAP3K2)	0	NA	0	102	76	225
P-0012919-T01-IM5	SOMATIC	PDGFRA	PDGFRA	4	4	55116771	55152155	5-UTR of PDGFRA(+): 8Kb before coding start	Intron of PDGFRA(+): 25bp after exon 18	GRCh37	DUPLICATION	PDGFRA (NM_006206) rearrangement: c.-12-8153_c.2562+25dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	35384	NA	0	5	10	5
P-0012919-T01-IM5	SOMATIC	KDR	RAP1GDS1	4	4	55963948	99136655	Intron of KDR(-): 15bp before exon 18	IGR: 46Kb before RAP1GDS1(+)	GRCh37	DELETION	KDR (NM_002253) rearrangement: chr4:g.99136655_c.2510-15del	PRECISE		MANUAL_OK	3to5	-	43172707	NA	0	23	27	22
P-0002181-T02-IM5	SOMATIC	GLI1	CPSF6	12	12	57857820	69655426	Exon 3 of GLI1(+)	Intron of CPSF6(+): 727bp before exon 9	GRCh37	DUPLICATION	CPSF6 (NM_007007) - GLI1 (NM_005269) rearrangement : c.1470-727:CPSF6_c.139:GLI1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (CPSF6-GLI1)	11797606	NA	0	102	150	178
P-0013514-T01-IM5	SOMATIC	ABL1	ABL1	9	9	133735646	133760623	Intron of ABL1(+): 3Kb before exon 4	Exon 11 of ABL1(+)	GRCh37	DUPLICATION	ABL1 (NM_005157) rearrangement: c.550-2504_c.2946dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	24977	NA	0	26	55	26
P-0014072-T01-IM5	SOMATIC	C16orf72	MAPK3	16	16	9301176	30129378	IGR: 116Kb before C16orf72(+)	Exon 4 of MAPK3(-)	GRCh37	DELETION	MAPK3 (NM_002746) rearrangement: chr16:g.9301176_c.650:MAPK3del	PRECISE		MANUAL_OK	3to5	-	20828202	NA	0	75	89	75
P-0014072-T01-IM5	SOMATIC	SPTLC3	INSR	20	19	12589947	7141571	IGR: 400Kb before SPTLC3(+)	Intron of INSR(-): 117bp after exon 13	GRCh37	TRANSLOCATION	INSR (NM_000208) rearrangement: t(19;20)(p13.2;p12.1)(chr19:g.7141571::chr20:g.12589947)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	20	7	17
P-0010098-T02-IM5	SOMATIC	PBRM1	PBRM1	3	3	52623091	52669106	Exon 19 of PBRM1(-)	Intron of PBRM1(-): 275bp before exon 12	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.1088-275_c.2960dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	46015	NA	0	76	60	72
P-0014158-T01-IM5	SOMATIC	LALBA	MLL2	12	12	48956575	49418454	IGR: 5Kb before LALBA(-)	Exon 50 of MLL2(-)	GRCh37	DELETION	MLL2 (NM_003482) rearrangement:chr12:g.48956575_c.15959:MLL2del	PRECISE		MANUAL_OK	3to5	-	461879	NA	0	30	35	28
P-0011534-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883253	42877936	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exon 4-11):  c.55+1941:TMPRSS2_c.39+64333:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2994683	NA	0	27	43	26
P-0013149-T01-IM5	SOMATIC	DNMT3B	PRPS1L1	20	7	31374410	18273376	Exon 5 of DNMT3B(+)	IGR: 207Kb before PRPS1L1(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) Rearrangement : t(7;20)(p21.1; q11.21)(chr7:g.18273376::chr20:g.31374410)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	102	49	102
P-0011377-T01-IM5	SOMATIC	MGA	MGA	15	15	42005182	42046533	Intron of MGA(+): 167bp before exon 9	Intron of MGA(+): 102bp before exon 17	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.3085-167_c.7009-102del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons: in frame	41351	NA	0	29	23	29
P-0011377-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831812	42867668	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 4-10): c.127-1163:TMPRSS2_c.19-14268:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3035856	NA	0	71	78	68
P-0010398-T01-IM5	SOMATIC	BRAF	OSBPL9	7	1	140484912	52228623	Intron of BRAF(-): 2Kb before exon 10	Intron of OSBPL9(+): 980bp after exon 11	GRCh37	TRANSLOCATION	OSBPL9 (NM_148909) - BRAF (NM_004333) Rearrangement : t(1;7)(p32.3;q34)(chr1:g.52228623::chr7:g.140484912)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (OSBPL9-BRAF)	0	NA	0	100	44	99
P-0014860-T01-IM6	SOMATIC	SMARCA4	TRAM1L1	19	4	11121062	118193638	Exon 14 of SMARCA4(+)	IGR: 189Kb before TRAM1L1(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(4;19)(q26;p13.2)(chr4:g.118193638::chr19:g.11121062)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	26	30
P-0013344-T01-IM5	SOMATIC	C9orf106	SPEN	9	1	132142700	16235959	IGR: 59Kb before C9orf106(+)	Exon 4 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;9)(1p36.13;9q34.13)(chr1:g.16235959::chr9:g.132142700)	PRECISE		MANUAL_OK	5to5	-	0	NA	1	27	24	26
P-0014034-T01-IM5	SOMATIC	ERBB4	ERBB4	2	2	212652785	212830816	Exon 4 of ERBB4(-)	Intron of ERBB4(-): 18Kb before exon 3	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.235-18475_c.521dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	178031	NA	0	102	100	102
P-0012416-T01-IM5	SOMATIC	KDM5A	KDM5A	12	12	416214	420505	Exon 24 of KDM5A(-)	Intron of KDM5A(-): 275bp before exon 21	GRCh37	DELETION	KDM5A (NM_001042603) rearrangement: c.3037-275_c.3972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4291	NA	0	11	29	10
P-0014486-T01-IM6	SOMATIC	ZNF398	MLL3	7	7	148881016	151878758	IGR: 900bp after ZNF398(+)	Exon 36 of MLL3(-)	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement: chr7:g.148881016_c.6187dup	PRECISE		MANUAL_OK	5to3	-	2997742	NA	0	26	35	25
P-0011334-T01-IM5	SOMATIC	RIPK2	NBN	8	8	90397655	90947772	IGR: 372Kb before RIPK2(+)	3-UTR of NBN(-): 38bp after coding stop	GRCh37	DELETION	NBN (NM_002485) Rearrangement: chr8:g.90397655_c.*38	PRECISE		MANUAL_OK	3to5	-	550117	NA	0	12	20	12
P-0010741-T01-IM5	SOMATIC	SERPINE2	CUL3	2	2	225008101	225370654	IGR: 168Kb before SERPINE2(-)	Intron of CUL3(-): 19bp after exon 8	GRCh37	DELETION	CUL3 (NM_003590) rearrangement : c.1206+19:CUL3_chr2:g.225008101del	PRECISE		MANUAL_OK	3to5	-	362553	NA	0	5	9	4
P-0012855-T01-IM5	SOMATIC	MYC	MYC	8	8	128752944	128755173	Exon 3 of MYC(+)	IGR: 7Kb before MYC(+)	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.1105_c.*1969del	PRECISE		MANUAL_OK	3to5	-	2229	NA	0	19	29	18
P-0013755-T01-IM5	SOMATIC	ERBB2	IKZF3	17	17	37866490	37925075	Intron of ERBB2(+): 36bp after exon 6	Intron of IKZF3(-): 2Kb before exon 8	GRCh37	DUPLICATION	ERBB2 (NM_004448) Rearrangement :  c.759+36:ERBB2_c.827-2329:IKZF3	PRECISE		MANUAL_OK	5to3	-	58585	NA	0	15	25	12
P-0013836-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55157244	55222130	Intron of EGFR(+): 53Kb before exon 2	Intron of EGFR(+): 285bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-52735_c.889+285del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	64886	NA	0	13	13	12
P-0010660-T01-IM5	SOMATIC	MGA	MAPKBP1	15	15	41999996	42096749	Exon 6 of MGA(+)	Intron of MAPKBP1(+): 5Kb after exon 3	GRCh37	DELETION	MGA (NM_001164273) - MAPKBP1 (NM_001128608) rearrangement: c.2259:MGA_c.206+4637:MAPKBP1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MGA-MAPKBP1)	96753	NA	0	63	85	61
P-0013621-T01-IM5	SOMATIC	FAM156B	KDM5C	X	X	53005970	53225167	IGR: 30Kb before FAM156B(-)	Exon 20 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.3051_chrX:g.53005970del	PRECISE		MANUAL_OK	3to5	-	219197	NA	0	23	53	22
P-0012600-T01-IM5	SOMATIC	FANCA	FANCA	16	16	89805106	89839431	Exon 43 of FANCA(-)	Intron of FANCA(-): 248bp after exon 22	GRCh37	DUPLICATION	FANCA (NM_000135) rearrangement: c.2014+248_c.4271dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	34325	NA	0	15	33	15
P-0004140-T03-IM5	SOMATIC	TP53	TP53	17	17	7577916	7580658	Intron of TP53(-): 261bp after exon 6	5-UTR of TP53(-): 746bp before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+261_c.-28-718del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2742	NA	0	47	73	45
P-0010044-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265650	41266474	Intron of CTNNB1(+): 78bp after exon 2	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.13+78_c.271del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	824	NA	0	102	0	106
P-0012046-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39863339	42872227	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement : c.40-45795:ERG_c.56-2111:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (ERG-TMPRSS2)	3008888	NA	0	51	44	51
P-0013409-T01-IM5	SOMATIC	CD79A	ARHGEF1	19	19	42383143	42394251	Exon 2 of CD79A(+)	Intron of ARHGEF1(+): 1Kb after exon 4	GRCh37	DELETION	CD79A (NM_001783)- ARHGEF1(NM_199002) Rearrangement : c.163C:CD79A_c.270+1315:ARHGEF1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CD79A-ARHGEF1)	11108	NA	0	10	14	10
P-0013886-T01-IM5	SOMATIC	RET	EML4	10	2	43610067	42550559	Exon 11 of RET(+)	Intron of EML4(+): 2Kb before exon 19	GRCh37	TRANSLOCATION	EML4 (NM_019063) - RET (NM_020975) rearrangement: t(2;10)(p21;q11.21)(chr2:g.42550559::chr10:g.43610067)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (EML4-RET)	0	NA	0	21	0	20
P-0013979-T01-IM5	SOMATIC	ROS1	GOPC	6	6	117642662	117887353	Intron of ROS1(-): 105bp before exon 35	Intron of GOPC(-): 664bp after exon 8	GRCh37	DELETION	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-8 fused with ROS1 exons 35-43) : c.1258+664:GOPC_c.5642-105:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (GOPC-ROS1)	244691	NA	0	23	36	22
P-0012905-T01-IM5	SOMATIC	WT1	MAML2	11	11	32410804	95743610	Intron of WT1(-): 79bp before exon 10	Intron of MAML2(-): 19Kb before exon 3	GRCh37	DELETION	MAML2 (NM_032427) -  WT1 (NM_024426) Rearrangement :  c.2140-18723:MAML2_c.1433-79:WT1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (MAML2-WT1)	63332806	NA	0	20	32	18
P-0014201-T01-IM6	SOMATIC	SDHC	LAMC1	1	1	161326521	182949452	Exon 4 of SDHC(+)	IGR: 43Kb before LAMC1(+)	GRCh37	INVERSION	SDHC (NM_003001) Rearrangement : c.296:SDHC_chr1:g.182949452inv	PRECISE		MANUAL_OK	3to3	-	21622931	NA	0	102	96	204
P-0014201-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76896383	76944507	Intron of ATRX(-): 5Kb before exon 16	Intron of ATRX(-): 87bp before exon 7	GRCh37	INVERSION	ATRX (NM_000489) Rearrangement : c.485-87_c.4558-4836inv	PRECISE		MANUAL_OK	3to3	-	48124	NA	0	16	14	15
P-0010429-T01-IM5	SOMATIC	DNAJC11	ARID1A	1	1	6744104	27100090	Intron of DNAJC11(-): 3Kb before exon 2	Exon 16 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) Rearrangement :  chr1:g.6744104_c.3886:ARID1Adel	PRECISE		MANUAL_OK	3to5	-	20355986	NA	0	6	12	6
P-0014120-T01-IM5	SOMATIC	EIF3H	XRCC2	8	7	117398324	152346274	IGR: 259Kb before EIF3H(-)	Exon 3 of XRCC2(-)	GRCh37	TRANSLOCATION	XRCC2 (NM_005431) rearrangement: t(7;8)(q36.1;q23.3)(chr7:g.152346274::chr8:g.117398324)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	102	0	169
P-0014531-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858344	42874070	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRRS2 (NM_001135099) -ERG (NM_004449) Fusion: c.56-3954:TMPRSS2_c.18+11943:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015726	NA	0	19	30	19
P-0010822-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37673757	37674854	Exon 10 of CDK12(+)	Intron of CDK12(+): 1Kb after exon 10	GRCh37	DUPLICATION	CDK12 (NM_016507) Rearrangement :  c.2911_c.2963+1045dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1097	NA	0	43	55	43
P-0013935-T01-IM5	SOMATIC	RB1	RB1	13	13	49033848	49049937	Exon 20 of RB1(+)	Intron of RB1(+): 900bp before exon 25	GRCh37	DELETION	RB1 (NM_000321) rearrangement:c.1985_c.2521-900del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	16089	NA	0	9	13	9
P-0011354-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55113731	55222127	Intron of EGFR(+): 27Kb after exon 1	Intron of EGFR(+): 282bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement : c.88+26673_889+282inv	PRECISE		MANUAL_OK	5to5	-	108396	NA	0	102	175	313
P-0012777-T01-IM5	SOMATIC	CDK12	SMARCE1	17	17	37619065	38747170	Exon 1 of CDK12(+)	IGR: 37Kb before SMARCE1(-)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.741:CDK12_chr17:g.38747170inv	PRECISE		MANUAL_OK	3to3	-	1128105	NA	0	20	12	19
P-0005436-T02-IM5	SOMATIC	SMAD3	KLF4	15	9	67459189	110787568	Exon 4 of SMAD3(+)	IGR: 540Kb before KLF4(-)	GRCh37	TRANSLOCATION	SMAD3 (NM_005902) Rearrangement :  t(9;15)(q31.3;q23)(chr9:g.110787568::chr15:g.67459189)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	36	0	35
P-0009786-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878096	42869553	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 493bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.126+493:TMPRSS2_c.40-60552:ERG	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2991457	NA	0	7	15	7
P-0014701-T01-IM6	SOMATIC	TMPRSS2	ARNT2	21	15	42843748	80623299	Exon 10 of TMPRSS2(-)	IGR: 73Kb before ARNT2(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement: t(15,21)(q25.1,q22.3)(chr15:g.15:80623299::chr21:g.42843748)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	90	0	88
P-0014701-T01-IM6	SOMATIC	CLDN14	ERG	21	21	37828386	39870413	IGR: 5Kb before CLDN14(-)	Intron of ERG(-): 53Kb before exon 4	GRCh37	INVERSION	ERG (NM_182918) Rearrangement : chr21:g.37828386_c.-109:ERGinv	PRECISE		MANUAL_OK	3to3	-	2042027	NA	0	24	17	23
P-0004297-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39871171	42869427	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 619bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 4-10): c.126+619:TMPRSS2_c.-867:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2998256	NA	0	4	17	4
P-0011018-T01-IM5	SOMATIC	ALK	EML4	2	2	29448314	42506102	Intron of ALK(-): 13bp after exon 19	Intron of EML4(+): 2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13057788	NA	0	32	76	32
P-0011395-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157527465	157544399	Exon 20 of ARID1B(+)	IGR: 12Kb after ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5016_chr6:g.157544399del	PRECISE		MANUAL_OK	3to5	-	16934	NA	0	15	16	15
P-0014076-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39845881	42873749	Intron of ERG(-): 24Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3633:TMPRSS2_c.18+24406:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3027868	NA	0	65	52	63
P-0012864-T01-IM5	SOMATIC	GYG2P1	NCOA3	Y	20	13833028	46262982	IGR: 685Kb before GYG2P1(-)	Intron of NCOA3(+): 43bp after exon 10	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) rearrangement: t(20:Y)(q13.12;q11.21)(chr20:g.46262982::chrY:g.13833028)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	15	0	14
P-0010978-T01-IM5	SOMATIC	ALK	EML4	2	2	29446414	42546901	Intron of ALK(-): 20bp before exon 20	Intron of EML4(+): 2Kb after exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused with ALK exons 20-29): c.2154+2237:EML4_c.3173-20:ALKinv			MANUAL_OK	3to3	Protein fusion: out of frame (EML4-ALK)	13100487	NA	NA	76	114	NA
P-0012055-T01-IM5	SOMATIC	SOX17	SOX17	8	8	55366186	55367502	IGR: 4Kb before SOX17(+)	Promoter of SOX17(+): 3Kb from tx start	GRCh37	INVERSION	SOX17 (NM_022454) rearrangement: c.-4513_c.-3197inv	PRECISE		MANUAL_OK	3to3	-	1316	NA	0	28	45	28
P-0012155-T01-IM5	SOMATIC	AURKB	AURKB	17	17	8110927	8113008	Exon 4 of AURKB(-)	Intron of AURKB(-): 487bp after exon 2	GRCh37	DELETION	AURKB (NM_004217) rearrangement: c.48+487_c.168del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2081	NA	0	10	17	10
P-0013790-T01-IM5	SOMATIC	RASA1	RASA1	5	5	86654086	86658439	Intron of RASA1(+): 4Kb before exon 10	Exon 10 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) Rearrangement : c.1333-4282_1404del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4353	NA	0	41	54	38
P-0011008-T01-IM5	SOMATIC	TERT	PDZD2	5	5	1295409	31965381	Promoter of TERT(-): 247bp from tx start	Intron of PDZD2(+): 18Kb before exon 2	GRCh37	DELETION	TERT (NM_198253) - PDZD2 (NM_178140) rearrangement : c.-305:TERT_c.477-17880:PDZD2del	PRECISE		MANUAL_OK	3to5	-	30669972	NA	0	34	38	34
P-0011506-T01-IM5	SOMATIC	ETV6	CDKN1B	12	12	11894784	12871701	Intron of ETV6(+): 11Kb before exon 2	Intron of CDKN1B(+): 58bp before exon 2	GRCh37	DELETION	ETV6 (NM_001987) - CDKN1B (NM_004064) rearrangement: c.34-10600:ETV6_c.476-58:CDKN1Bdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (ETV6-CDKN1B)	976917	NA	0	11	13	11
P-0011433-T01-IM5	SOMATIC	MSH6	FBXO11	2	2	48026860	48110024	Exon 4 of MSH6(+)	Intron of FBXO11(-): 23Kb after exon 1	GRCh37	DELETION	MSH6 (NM_000179) - FBXO11 (NM_001190274) rearrangement : c.1738:MSH6_c.232+22604:FBXO11del	PRECISE		MANUAL_OK	3to5	Antisense fusion	83164	NA	0	22	31	20
P-0008523-T02-IM6	SOMATIC	EWSR1	RIC3	22	11	29684096	8144492	Intron of EWSR1(+): 499bp before exon 7	Intron of RIC3(-): 4Kb after exon 5	GRCh37	TRANSLOCATION	RIC3 (NM_001206671) - EWSR1 (NM_013986)  rearrangement : t(11;22)(11p15.4;22q12.2)(chr11:g.8144492:chr22:g.29684096)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (RIC3-EWSR1)	0	NA	0	47	33	44
P-0014368-T01-IM6	SOMATIC	FOXA1	SSTR1	14	14	38061057	38567231	Exon 2 of FOXA1(-)	IGR: 110Kb before SSTR1(+)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.932_chr14:g.38567231del	PRECISE		MANUAL_OK	3to5	-	506174	NA	0	21	24	21
P-0012260-T01-IM5	SOMATIC	RB1	RB1	13	13	48936643	48938842	Intron of RB1(+): 308bp before exon 8	Intron of RB1(+): 188bp before exon 9	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.719-308_c.862-188del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	2199	NA	0	6	8	5
P-0012260-T01-IM5	SOMATIC	ERBB2	C17orf37	17	17	37883885	37886288	Intron of ERBB2(+): 57bp before exon 27	Intron of C17orf37(-): 159bp after exon 2	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3413-57:ERBB2_chr17:g.37886288del	PRECISE		MANUAL_OK	3to5	Antisense fusion	2403	NA	0	50	48	43
P-0012260-T01-IM5	SOMATIC	CEBPB	CEBPB	20	20	48808548	48840052	Exon 1 of CEBPB(+)	IGR: 33Kb before CEBPB(+)	GRCh37	INVERSION	CEBPB (NM_005194) rearrangement: c.978:CEBPB_chr20:g.48840052inv	IMPRECISE		MANUAL_OK	3to3	-	31504	NA	0	14	0	14
P-0007307-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39844413	42869887	Intron of ERG(-): 26Kb after exon 1	Intron of TMPRSS2(-): 159bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons1-2 with ERG exon2-10) : c.126+159:TMPRSS2_c.18+25874:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3025474	NA	0	55	41	52
P-0013116-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39853523	42872374	Intron of ERG(-): 17Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2258:TMPRSS2_c.18+16764:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3018851	NA	0	75	61	74
P-0014237-T01-IM6	SOMATIC	SMARCA4	GTSF1	19	12	11172477	54842304	Exon 33 of SMARCA4(+)	IGR: 7Kb before GTSF1(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(12;19)(q13.3;p13.2)(chr12:g.:54842304::chr19:g.11172477)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	47	48	46
P-0014237-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739135	1808958	Intron of TACC3(+): 80bp after exon 9	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 with TACC3 exons 10-16): c.2390:FGFR3_c.1836+80:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69823	NA	0	74	92	72
P-0010659-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868208	42867516	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 2-10): c.127-1011:TMPRSS2_c.18+2079:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2999308	NA	0	7	11	7
P-0014530-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1732847	1808715	Intron of TACC3(+): 52bp before exon 6	Intron of FGFR3(+): 54bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion (FGFR3 exons 1-17 fused with TACC3 exons 6-16) : c.2274+54:FGFR3_c.1462-52:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	75868	NA	0	18	23	17
P-0013879-T01-IM5	SOMATIC	PIK3R2	PIK3R2	19	19	18271142	18273790	Intron of PIK3R2(+): 139bp before exon 3	Exon 10 of PIK3R2(+)	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement: c.323-139_c.1123del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2648	NA	0	29	40	29
P-0012145-T01-IM5	SOMATIC	RNF43	ALDH4A1	17	1	56434626	19206599	Intron of RNF43(-): 203bp after exon 9	Intron of ALDH4A1(-): 732bp before exon 9	GRCh37	TRANSLOCATION	RNF43 (NM_017763) rearrangement: t(1;17)(p36.13;q22)(chr1:g.19206599::chr17:g.56434626)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	12	23	12
P-0011192-T01-IM5	SOMATIC	MCL1	ENSA	1	1	150552571	150601162	Promoter of MCL1(-): 435bp from tx start	Intron of ENSA(-): 375bp after exon 1	GRCh37	DUPLICATION	MCL1 (NM_021960) - ENSA (NM_004436) rearrangement : c.-565:MCL1_c.57+728:ENSAdup	PRECISE		MANUAL_OK	5to3	Transcript fusion (MCL1-ENSA)	48591	NA	0	21	35	20
P-0011192-T01-IM5	SOMATIC	TERT	SDHAP3	5	5	1295442	1536135	Promoter of TERT(-): 280bp from tx start	IGR: 36Kb before SDHAP3(-)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-338:TERT_chr5:g.1536135del	PRECISE		MANUAL_OK	3to5	-	240693	NA	0	47	38	47
P-0011175-T01-IM5	SOMATIC	CBL	CBL	11	11	119148589	119155388	Intron of CBL(+): 35bp after exon 7	Intron of CBL(+): 291bp before exon 10	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+35_c.1432-291del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	6799	NA	0	31	31	30
P-0011175-T01-IM5	SOMATIC	MSH2	MSH2	2	2	47635674	47683971	Exon 2 of MSH2(+)	Intron of MSH2(+): 6Kb before exon 9	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.346_c.1387-6199del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	48297	NA	0	16	25	16
P-0011281-T01-IM5	SOMATIC	ELP4	WT1	11	11	31748874	32413454	Intron of ELP4(+): 56Kb before exon 10	Intron of WT1(-): 64bp after exon 9	GRCh37	INVERSION	WT1 (NM_024426) - ELP4 (NM_019040) rearrangement: c.1432+64:WT1_c.1144-56067:ELP4inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (WT1-ELP4)	664580	NA	0	30	27	29
P-0012562-T01-IM5	SOMATIC	DNAJB1	SDPR	19	2	14627434	192746391	Exon 2 of DNAJB1(-)	IGR: 47Kb before SDPR(-)	GRCh37	TRANSLOCATION	DNAJB1 (NM_006145) rearrangement: t(2;19)(q32.3;p13.12)(chr2:g.192746391::chr19:g.14627434)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	32	0	13
P-0013985-T01-IM5	SOMATIC	MDC1	PEX5L	6	3	30681978	179829046	Intron of MDC1(-): 18bp before exon 3	IGR: 311Kb before PEX5L(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) Rearrangement : t(3,6)(q26.33,p21.33)(chr3:g.179829046::chr6:g.30681978)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	11	11
P-0013925-T01-IM5	SOMATIC	PTPRS	PTPRS	19	19	5274143	5289206	Intron of PTPRS(-): 67bp after exon 3	5-UTR of PTPRS(-): 3Kb before coding start	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.-94-2961_c.237+67inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	15063	NA	0	7	9	7
P-0014007-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2119889	2133616	Intron of TSC2(+): 568bp before exon 17	Intron of TSC2(+): 80bp before exon 32	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1717-568_c.3884-80del	PRECISE		MANUAL_OK	3to5	Deletion of 15 exons: out of frame	13727	NA	0	12	13	11
P-0010782-T01-IM5	SOMATIC	NBN	TMEM64	8	8	90990460	91652800	Exon 5 of NBN(-)	Intron of TMEM64(-): 5Kb after exon 1	GRCh37	DUPLICATION	NBN (NM_002485) - TMEM64 (NM_001008495) rearrangement: c.572:NBN_c.795+4539:TMEM64dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NBN-TMEM64)	662340	NA	0	32	39	31
P-0013749-T02-IM6	SOMATIC	MEN1	MEN1	11	11	64575100	64577175	Exon 5 of MEN1(-)	Exon 3 of MEN1(-)	GRCh37	DELETION	MEN1 (NM_000244) rearrangement : c.407_722del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2075	NA	0	47	49	46
P-0010208-T01-IM5	SOMATIC	UBAC1	NOTCH1	9	9	138844044	139393554	Intron of UBAC1(-): 1Kb after exon 3	Intron of NOTCH1(-): 10bp after exon 32	GRCh37	INVERSION	NOTCH1 (NM_017617) - UBAC1 (NM_016172) rearrangement : c.6082+10:NOTCH1_c.333+1482:UBAC1inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	549510	NA	0	11	23	10
P-0002978-T05-IM6	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12028576::chr15:g.88506571)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	12	5	12
P-0013304-T01-IM5	SOMATIC	SDCCAG8	AKT3	1	1	243593580	243668396	Intron of SDCCAG8(+): 4Kb after exon 16	Intron of AKT3(-): 5Kb before exon 13	GRCh37	DELETION	AKT3 (NM_005465) - SDCCAG8 (NM_006642) rearrangement: c.1985+3720:SDCCAG8_c.*155:AKT3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	74816	NA	0	7	14	5
P-0012923-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684066	32416521	Intron of EWSR1(+): 529bp before exon 7	Intron of WT1(-): 1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused in-frame to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416521::chr22:g.29684066)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	17	25	17
P-0010553-T01-IM5	SOMATIC	EWSR1	EWSR1	22	22	29666935	29687828	Intron of EWSR1(+): 1Kb before exon 2	Intron of EWSR1(+): 240bp after exon 8	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.14-1270_c.1027+240dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons: in frame	20893	NA	0	38	31	38
P-0014973-T01-IM6	SOMATIC	RRAGC	RRAGC	1	1	39315703	39317954	Intron of RRAGC(-): 2Kb after exon 5	Intron of RRAGC(-): 92bp after exon 4	GRCh37	DELETION	RRAGC (NM_022157) Rearrangement : c.756+92_899+1584del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	2251	NA	0	12	15	9
P-0015002-T01-IM6	SOMATIC	A2BP1	ZFHX3	16	16	6119693	72831356	5-UTR of A2BP1(+): 982Kb before coding start	Exon 9 of ZFHX3(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement : c.5225:ZFHX3_g.6119693inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (ZFHX3-A2BP1)	66711663	NA	0	23	21	22
P-0010668-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88513282	12029109	Intron of NTRK3(-): 29Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12029109::chr15:g.88513282)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	38	14	37
P-0005454-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39856694	42872059	Intron of ERG(-): 14Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1943:TMPRSS2_c.18+13593:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015365	NA	0	60	60	59
P-0013372-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39797867	42868312	Intron of ERG(-): 2Kb before exon 5	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1734:TMPRSS2_c.237-2384:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3070445	NA	0	102	73	186
P-0014807-T01-IM6	SOMATIC	NOTCH4	C6orf222	6	6	32181597	36285273	Exon 14 of NOTCH4(-)	Intron of C6orf222(-): 105bp before exon 12	GRCh37	DELETION	C6orf222 (NM_001010903) - NOTCH4 (NM_004557) rearrangement: c.1924-105:C6orf222_c.2188:NOTCH4del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (C6orf222-NOTCH4)	4103676	NA	0	20	34	20
P-0012048-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884663	42869860	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 186bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.126+186:TMPRSS2_c.39+62923:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2985197	NA	0	21	32	22
P-0014697-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117874193	117884274	Intron of RAD21(-): 14bp before exon 4	5-UTR of RAD21(-): 5Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) Rearrangement : c.-33+2576_c.275-14del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	10081	NA	0	29	45	29
P-0013355-T01-IM5	SOMATIC	STK11	STK11	19	19	1219880	1221259	Intron of STK11(+): 468bp after exon 3	Exon 6 of STK11(+)	GRCh37	DUPLICATION	STK11 (NM_000455) rearrangement: c.464+468_c.782dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1379	NA	0	7	14	7
P-0014892-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139383644	139417282	IGR: 5Kb before NOTCH1(-)	Intron of NOTCH1(-): 20bp after exon 4	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: chr9:g.139383644_c.742+20del	PRECISE		MANUAL_OK	3to5	-	33638	NA	0	13	26	13
P-0012741-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872098	42878272	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.55+1605:TMPRSS2_c.40-54554:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3006174	NA	0	13	28	13
P-0004628-T02-IM5	SOMATIC	SMARCA4	GALNTL6	19	4	11114108	173794656	Intron of SMARCA4(+): 35bp after exon 12	Intron of GALNTL6(+): 9Kb before exon 8	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) - GALNTL6 (NM_001034845) Rearrangement:  t(4,19)(q34.1,p13.2)(chr4:g.173794656::chr19:g.11114108)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SMARCA4-GALNTL6)	0	NA	0	8	6	8
P-0014859-T01-IM6	SOMATIC	CTRC	NTRK1	1	1	15766843	156841592	Exon 2 of CTRC(+)	Intron of NTRK1(+): 45bp after exon 8	GRCh37	DELETION	CTRC (NM_007272)  - NTRK1 (NM_002529) rearrangement: c.88:CTRC_c.850+45:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CTRC-NTRK1)	141074749	NA	0	101	85	158
P-0014859-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46208593	46215134	Intron of ARID2(+): 3Kb before exon 5	Intron of ARID2(+): 69bp before exon 6	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.419-2860_c.638-69del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	6541	NA	0	17	20	17
P-0014990-T01-IM6	SOMATIC	ZFP30	MLL2	19	12	38141811	49432673	5-UTR of ZFP30(-): 3Kb before coding start	Exon 34 of MLL2(-)	GRCh37	TRANSLOCATION	MLL2 (NM_003482) -  ZFP30 (NM_014898) Rearrangement : t(12;19)(q13.12;q13.13)(chr12:g.49432673::chr19:g.38141811)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MLL2-ZFP30)	0	NA	0	29	11	27
P-0013704-T01-IM5	SOMATIC	SOX9	SOX9	17	17	70119369	70120475	Intron of SOX9(+): 256bp after exon 2	Exon 3 of SOX9(+)	GRCh37	DUPLICATION	SOX9 (NM_000346) rearrangement: c.685+256_c.1477dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1106	NA	0	70	63	69
P-0010463-T01-IM5	SOMATIC	A2BP1	MAPK3	16	16	6053896	30128671	IGR: 15Kb before A2BP1(+)	Intron of MAPK3(-): 65bp before exon 6	GRCh37	INVERSION	MAPK3 (NM_002746) : rearrangement: c.776-65_chr16:g.6053896inv	IMPRECISE		MANUAL_OK	3to3	-	24074775	NA	0	26	0	26
P-0010463-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44756529	44942601	Intron of KDM6A(+): 23Kb after exon 2	Intron of KDM6A(+): 104bp before exon 23	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.225+23296_c.3285-104del	PRECISE		MANUAL_OK	3to5	Deletion of 20 exons: out of frame	186072	NA	0	37	25	29
P-0011370-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140482611	140546815	Intron of BRAF(-): 210bp after exon 10	Intron of BRAF(-): 3Kb after exon 2	GRCh37	DELETION	BRAF (NM_004333) Rearrangement :  c.240+3096_c.1314+210del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons: in frame	64204	NA	0	77	58	74
P-0014905-T01-IM6	SOMATIC	PTEN	MYOF	10	10	89720704	95203058	Exon 8 of PTEN(+)	Intron of MYOF(-): 9Kb after exon 3	GRCh37	INVERSION	PTEN (NM_000314)- MYOF (NM_013451) Rearrangement : c.855:PTEN_c.236+8749:MYOFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (PTEN-MYOF)	5482354	NA	0	38	92	31
P-0010953-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39855305	42872263	Intron of ERG(-): 15Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-2147:TMPRSS2_c.40-37761:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3016958	NA	0	25	34	24
P-0014513-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974511	21979672	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 8Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.-4846_c.150+166del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5161	NA	0	34	41	33
P-0012571-T01-IM5	SOMATIC	FLOT2	MST1R	17	3	27200513	49932631	IGR: 6Kb before FLOT2(-)	Exon 14 of MST1R(-)	GRCh37	TRANSLOCATION	MST1R (NM_002447) rearrangement: t(3;17)(p21.31;q11.2)(chr3:g.49932631::chr17:g.27200513 )	PRECISE		MANUAL_OK	3to3	-	0	NA	0	52	25	50
P-0005889-T02-IM6	SOMATIC	MLL2	MLL2	12	12	49420033	49424108	Exon 48 of MLL2(-)	Exon 42 of MLL2(-)	GRCh37	INVERSION	MLL2 (NM_003482) Rearrangement :  c.15716_13954inv	PRECISE		MANUAL_OK	3to3	-	4075	NA	0	102	86	145
P-0010731-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880628	42872447	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement : c.56-2331:TMPRSS2_c.40-63084:ERGinv	PRECISE		MANUAL_OK	3to3	-	2991819	NA	0	26	39	26
P-0000373-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39842043	42874110	Intron of ERG(-): 24Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3994:TMPRSS2_c.19-24499:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3032067	NA	0	41	63	39
P-0014824-T01-IM6	SOMATIC	AKT1	PLD4	14	14	105239416	105380925	Exon 11 of AKT1(-)	IGR: 10Kb before PLD4(+)	GRCh37	INVERSION	AKT1 (NM_001014431) rearrangement: c.971:AKT1_chr14:g.105380925inv	PRECISE		MANUAL_OK	3to3	-	141509	NA	0	5	6	5
P-0013828-T01-IM5	SOMATIC	PCSK1	APC	5	5	95664163	112102926	IGR: 62Kb before PCSK1(-)	Exon 4 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: chr5:g.95664163_c.261:APCdup	PRECISE		MANUAL_OK	5to3	-	16438763	NA	0	31	38	31
P-0013835-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89336886	89348804	Intron of ANKRD11(-): 339bp after exon 12	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.4146_c.7806+339del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	11918	NA	0	6	11	6
P-0010004-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55136231	55222067	Intron of EGFR(+): 49Kb after exon 1	Intron of EGFR(+): 222bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :   c.88+49173_889+222del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	85836	NA	0	6	11	6
P-0010004-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268874	55271187	Intron of EGFR(+): 7bp before exon 25	Intron of EGFR(+): 869bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2947-7_3271+869del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	2313	NA	0	4	7	4
P-0012710-T01-IM5	SOMATIC	BRAF	GLI2	7	2	140492711	121434276	Intron of BRAF(-): 1Kb after exon 8	IGR: 121Kb before GLI2(+)	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement : t(2;7)(7q34;5q21.3)(chr2:121434276::chr7:140492711)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	37	23	36
P-0013392-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11918729	12019912	Intron of ETV6(+): 13Kb after exon 2	Intron of ETV6(+): 2Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.163+13216_c.464-2446dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	101183	NA	0	15	32	15
P-0014511-T01-IM6	SOMATIC	WWOX	FANCA	16	16	78164970	89815045	Intron of WWOX(+): 16Kb after exon 4	Intron of FANCA(-): 22bp after exon 33	GRCh37	INVERSION	FANCA (NM_000135) - WWOX (NM_016373) rearrangement: c.3348+22:FANCA_c.409+15919:WWOXinv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (FANCA-WWOX)	11650075	NA	0	7	13	7
P-0014511-T01-IM6	SOMATIC	TP53	TP53	17	17	7577530	7579480	Exon 7 of TP53(-)	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.207_c.751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1950	NA	0	79	80	77
P-0011321-T01-IM5	SOMATIC	PIK3R2	ZNF714	19	19	18273285	21282885	Exon 9 of PIK3R2(+)	Intron of ZNF714(+): 1Kb after exon 4	GRCh37	DELETION	PIK3R2 (NM_005027) - ZNF714 (NM_18251) rearrangement: c.1078:PIK3R2_c.142+1169:ZNF714del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (PIK3R2-ZNF714)	3009600	NA	0	45	39	33
P-0012285-T01-IM5	SOMATIC	C2orf39	PAX8	2	2	26654866	113982624	Exon 7 of C2orf39(+)	Intron of PAX8(-): 2Kb after exon 10	GRCh37	INVERSION	PAX8 (NM_003466) - C2orf39 (NM_145038) rearrangement:c.1189+2108:PAX8_c.880:C2orf39inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (PAX8-C2orf39)	87327758	NA	0	8	16	8
P-0012285-T01-IM5	SOMATIC	CRIM1	ERCC3	2	2	36766397	128050466	Intron of CRIM1(+): 2Kb after exon 14	Intron of ERCC3(-): 44bp before exon 3	GRCh37	INVERSION	CRIM1 (NM_016441) - ERCC3 (NM_000122) rearrangement: c.2623+1708:CRIM1_c.235-44:ERCC3inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (CRIM1-ERCC3)	91284069	NA	0	9	12	9
P-0010214-T01-IM5	SOMATIC	TOP1	HADHB	20	2	39728683	26507418	Intron of TOP1(+): 13bp before exon 12	Intron of HADHB(+): 333bp before exon 14	GRCh37	TRANSLOCATION	TOP1 (NM_003286) rearrangement : t(2;20)(p23.3;q12)(chr2:g.26507418::chr20:g.39728683)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	38	29	38
P-0011550-T01-IM5	SOMATIC	TP53	TP53	17	17	7572118	7576835	3-UTR of TP53(-): 809bp after coding stop	Intron of TP53(-): 18bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+18_c.*809del	PRECISE		MANUAL_OK	3to5	-	4717	NA	0	59	77	59
P-0012151-T01-IM5	SOMATIC	KEAP1	KEAP1	19	19	10602734	10604377	Exon 3 of KEAP1(-)	Intron of KEAP1(-): 1Kb before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-1439_c.844del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1643	NA	0	10	12	9
P-0013113-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11112781	11150209	Intron of SMARCA4(+): 924bp before exon 11	Exon 30 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1813-924_c.4171-1774del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	37428	NA	0	47	84	46
P-0014626-T01-IM6	SOMATIC	POLD1	SRRM1	19	1	50919623	24979609	Intron of POLD1(+): 30bp before exon 23	Intron of SRRM1(+): 86bp after exon 8	GRCh37	TRANSLOCATION	SRRM1 (NM_005839) - POLD1 (NM_002691) rearrangement: t(1;19)(p36.11;q13.33)(chr1:g.24979609::chr19:g.50919623)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (SRRM1-POLD1)	0	NA	0	56	0	51
P-0014626-T01-IM6	SOMATIC	MSH3	MSH3	5	5	80160675	80163801	Exon 22 of MSH3(+)	Intron of MSH3(+): 3Kb after exon 22	GRCh37	DUPLICATION	MSH3 (NM_002439) rearrangement: c.3044_c.3130+3040dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3126	NA	0	65	50	62
P-0012820-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72523259	72984364	IGR: 294Kb before ZFHX3(-)	Intron of ZFHX3(-): 4bp after exon 3	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : chr16:g.72984364_g.72523259del	PRECISE		MANUAL_OK	3to5	-	461105	NA	0	80	51	78
P-0014844-T01-IM6	SOMATIC	RET	MIR1973	10	4	43606798	117039927	Exon 7 of RET(+)	IGR: 181Kb before MIR1973(+)	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(4;10)(q26;q11.21)(chr4:g.117039927)(chr10:g.43606798)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	15	26
P-0010177-T01-IM5	SOMATIC	ALK	EML4	2	2	29447358	42525732	Intron of ALK(-): 964bp before exon 20	Intron of EML4(+): 3Kb before exon 13	GRCh37	INVERSION	EML4  (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused in frame with ALK exons 20-29): c.1490-2649:EML4_c.3173-964:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13078374	NA	0	41	54	40
P-0014455-T01-IM6	SOMATIC	NLRC3	CREBBP	16	16	3604897	3820505	Intron of NLRC3(-): 571bp before exon 9	Intron of CREBBP(-): 66bp after exon 14	GRCh37	DELETION	CREBBP (NM_004380) - NLRC3(NM_178844) Rearrangement : c.2880+66:CREBBP_c.2184-571:NLRC3del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (CREBBP-NLRC3)	215608	NA	0	33	29	32
P-0014099-T01-IM5	SOMATIC	IKZF1	CNTNAP2	7	7	50467585	146291593	Intron of IKZF1(+): 31bp before exon 8	Intron of CNTNAP2(+): 180Kb before exon 2	GRCh37	INVERSION	IKZF1 (NM_006060) - CNTNAP2 (NM_014141) rearrangement: c.855-31:IKZF1_c.98-179770:CNTNAP2inv	PRECISE		MANUAL_OK	5to5	-	95824008	NA	0	74	70	72
P-0014430-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11075863	11123718	5-UTR of SMARCA4(+): 19Kb before coding start	Exon 15 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.-32+4013_c.2368del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	47855	NA	0	22	28	22
P-0012282-T02-IM5	SOMATIC	GALNT11	MLL3	7	7	151796419	151874218	Intron of GALNT11(+): 1Kb before exon 3	Exon 38 of MLL3(-)	GRCh37	DELETION	MLL3 (NM_170606)- GALNT11 (NM_022087) Rearrangement : c.296-1464:GALNT11_c.8320:MLL3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	77799	NA	0	14	17	14
P-0010304-T01-IM5	SOMATIC	DHX16	MDC1	6	6	30622571	30670393	Exon 19 of DHX16(-)	Exon 14 of MDC1(-)	GRCh37	DUPLICATION	DHX16 (NM_003587) - MDC1 (NM_014641) Rearrangement :  c.2909_DHX16_c.6039:MDC1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DHX16-MDC1)	47822	NA	0	31	40	31
P-0001184-T02-IM5	SOMATIC	TCF3	LOC100101266	19	19	1620942	24369803	Intron of TCF3(-): 25bp after exon 12	IGR: 25Kb before LOC100101266(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement : c.1093+25:TCF3_chr19:g.24369803del	PRECISE		MANUAL_OK	3to5	-	22748861	NA	0	102	131	170
P-0001184-T02-IM5	SOMATIC	TCF3	FAM108A1	19	19	1620997	1878025	Exon 12 of TCF3(-)	Intron of FAM108A1(-): 339bp before exon 5	GRCh37	INVERSION	TCF3 (NM_001136139) - ABHD17A (NM_001130111) rearrangement : c.1093+25:TCF3_chr19:g.24369803del	PRECISE		MANUAL_OK	5to5	Antisense fusion	257028	NA	0	102	263	156
P-0012246-T01-IM5	SOMATIC	CDKL5	ATM	X	11	18639068	108168152	Intron of CDKL5(+): 982bp after exon 16	Intron of ATM(+): 43bp after exon 33	GRCh37	TRANSLOCATION	ATM (NM_000051) Rearrangement : t(11;X)(q22.3;p22.13)(chr11:g.108168152::chrX:g.18639068)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	33	17	32
P-0009297-T02-IM5	SOMATIC	MED12	MED12	X	X	70349725	70354912	Intron of MED12(+): 20bp after exon 27	Intron of MED12(+): 30bp before exon 36	GRCh37	DUPLICATION	MED12 (NM_005120) Rearrangement : c.3867+20_c.4864-30dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	5187	NA	0	8	7	6
P-0012104-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39951033	42869622	5-UTR of ERG(-): 3Kb before coding start	Intron of TMPRSS2(-): 424bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_001243428) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11): (c.126+879:TMRPSS2_c.40-63033:ERGdel)	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2918589	NA	0	8	20	8
P-0011156-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39854382	42875503	Intron of ERG(-): 16Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+4374:TMPRSS2_c.18+15905:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3021121	NA	0	22	21	20
P-0012778-T01-IM5	SOMATIC	ALK	EML4	2	2	29447442	42493191	Intron of ALK(-): 885bp after exon 19	Intron of EML4(+): 1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1320:EML4_c.3172+885:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13045749	NA	0	63	55	61
P-0013211-T01-IM5	SOMATIC	EWSR1	CREB3L1	22	11	29691220	46332941	Intron of EWSR1(+): 1Kb before exon 11	Intron of CREB3L1(+): 201bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) fusion (EWSR1 exons 1-12 with CREB3L1 exons 6-12): t(11;22)(p11.2;q12.2)(chr11:g.46332941::chr22:g.29691220)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-CREB3L1)	0	NA	0	3	4	2
P-0012028-T01-IM5	SOMATIC	TERT	CDH18	5	5	1295302	19154622	Promoter of TERT(-): 140bp from tx start	IGR: 319Kb before CDH18(-)	GRCh37	INVERSION	TERT (NM_198253) rearrangement : c.-198_chr5:g.19154622inv	PRECISE		MANUAL_OK	3to3	-	17859320	NA	0	102	211	191
P-0013707-T01-IM5	SOMATIC	CPT1A	FGF4	11	11	68525657	69591926	Intron of CPT1A(-): 459bp before exon 19	Promoter of FGF4(-): 2Kb from tx start	GRCh37	DUPLICATION	CPT1A (NM_001876) - FGF4 (NM_002007) rearrangement: c.2236-459:CPT1A_c.-2074:FGF4dup	PRECISE		MANUAL_OK	5to3	Transcript fusion (CPT1A-FGF4)	1066269	NA	0	8	13	8
P-0014583-T01-IM6	SOMATIC	BRCA2	C2orf86	13	2	32912064	63335220	Exon 11 of BRCA2(+)	IGR: 13Kb before C2orf86(-)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(2;13)(p15;q13.1)(chr2:g.63335220::chr13:g.:32912064)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	34	35
P-0014583-T01-IM6	SOMATIC	TP53	TP53	17	17	7576943	7579700	Intron of TP53(-): 17bp before exon 9	Exon 3 of TP53(-)	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.96_c.920-17dup.	IMPRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	2757	NA	0	18	0	18
P-0014583-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16040631	16061446	Exon 14 of NCOR1(-)	Intron of NCOR1(-): 628bp after exon 6	GRCh37	DUPLICATION	NCOR1 (NM_006311) rearrangement: c.732+628_c.1503dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	20815	NA	0	34	43	30
P-0014583-T01-IM6	SOMATIC	TP63	TP63	3	3	189608694	189612106	Intron of TP63(+): 23bp after exon 13	Exon 14 of TP63(+)	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.1746+23_c.1858del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3412	NA	0	57	71	56
P-0014583-T01-IM6	SOMATIC	NBN	NBN	8	8	90989638	90995176	Intron of NBN(-): 810bp after exon 5	Intron of NBN(-): 93bp before exon 2	GRCh37	DUPLICATION	NBN (NM_002485) rearrangement: c.38-93_c.584+810dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons: out of frame	5538	NA	0	12	14	12
P-0014435-T01-IM6	SOMATIC	EPAS1	EPAS1	2	2	46607989	46609641	Intron of EPAS1(+): 133bp after exon 12	Exon 15 of EPAS1(+)	GRCh37	DELETION	EPAS1 (NM_001430)  rearrangement: c.2045+133_c.2365del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1652	NA	0	65	82	64
P-0004282-T03-IM5	SOMATIC	NAB2	STAT6	12	12	57488115	57493380	Intron of NAB2(+): 280bp before exon 7	Intron of STAT6(-): 157bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) Fusion (NAB2 exons 1 to 6 fused with STAT6 exon 16 to 22) :  c.1469-280:NAB2_c.1745-157:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5265	NA	0	19	43	18
P-0013241-T01-IM5	SOMATIC	FGFR2	KLHL29	10	2	123241923	23647979	Intron of FGFR2(-): 232bp before exon 17	5-UTR of KLHL29(+): 137Kb before coding start	GRCh37	TRANSLOCATION	KLHL29 (NM_052920) - FGFR2 (NM_000141) rearrangement: t(2;10)(p24.1;q26.13)(chr2:g.:23647979::chr10:g.123241923)	PRECISE		MANUAL_OK	3to3	Transcript fusion (KLHL29-FGFR2)	0	NA	0	71	41	70
P-0013241-T01-IM5	SOMATIC	ATP6V1D	FGFR2	14	10	67818116	123242048	Intron of ATP6V1D(-): 709bp before exon 3	Intron of FGFR2(-): 357bp before exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ATP6V1D (NM_015994) rearrangement: t(10;14)(q26.13;q23.2)(chr10:g.123242048::chr14:g.67818116)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-ATP6V1D)	0	NA	0	46	21	46
P-0004961-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55241471	55269311	Intron of EGFR(+): 143bp before exon 18	Intron of EGFR(+): 117bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) Rearrangement :  c.2062-143_c.3115-117dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	27840	NA	0	7	11	6
P-0012654-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1737337	1808935	Intron of TACC3(+): 121bp before exon 8	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) -TACC3 (NM_006342)fusion: c.2367:FGFR3_c.1645-121:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	71598	NA	0	102	133	135
P-0013869-T01-IM5	SOMATIC	ALK	EML4	2	2	29446712	42528194	Intron of ALK(-): 318bp before exon 20	Intron of EML4(+): 187bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1 to 13 with exons 20-29 of ALK) : c.1490-187:EML4_c.3173-318:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13081482	NA	0	36	39	36
P-0013336-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831340	42874388	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2 to 10) : c.56-4272:TMPRSS2_c.19-13796:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3043048	NA	0	102	98	119
P-0014502-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36194075	36228297	Intron of RUNX1(-): 82bp before exon 5	Intron of RUNX1(-): 3Kb after exon 3	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.613+3474_c.805+12632del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	34222	NA	0	11	13	11
P-0010087-T01-IM5	SOMATIC	NBN	C8orf38	8	8	90990594	96017141	Intron of NBN(-): 43bp before exon 5	IGR: 20Kb before C8orf38(+)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: chr8;g.96017141_c.481-43:NBNinv	PRECISE		MANUAL_OK	3to3	-	5026547	NA	0	102	68	124
P-0014976-T01-IM6	SOMATIC	ARID2	SFRS2IP	12	12	46298094	46347258	Intron of ARID2(+): 623bp before exon 21	Intron of SFRS2IP(-): 2Kb before exon 4	GRCh37	INVERSION	SCAF11 (NM_004719) - ARID2 (NM_152641) Rearrangement : c.220-1748:SCAF11_c.5364-623:ARID2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (SFRS2IP-ARID2)	49164	NA	0	22	25	18
P-0014976-T01-IM6	SOMATIC	MIAT	EWSR1	22	22	27475510	29689313	IGR: 422Kb before MIAT(+)	Intron of EWSR1(+): 718bp after exon 10	GRCh37	DELETION	EWSR1 (NM_013986) Rearrangement : c.945+718:EWSR1_chr22:27475510del	PRECISE		MANUAL_OK	3to5	-	2213803	NA	0	26	31	26
P-0006768-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55172826	55223023	Intron of EGFR(+): 37Kb before exon 2	Intron of EGFR(+): 500bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) Rearrangement : c.89-37153_890-500inv	PRECISE		MANUAL_OK	5to5	-	50197	NA	0	19	16	14
P-0014690-T01-IM6	SOMATIC	NUP93	SLC12A3	16	16	56866348	56898209	Intron of NUP93(+): 48bp after exon 12	Promoter of SLC12A3(+): 910bp from tx start	GRCh37	DELETION	NUP93 (NM_014669) rearrangement: c.1345+48:NUP93_chr16:g.56898209del	PRECISE		MANUAL_OK	3to5	Transcript fusion (NUP93-SLC12A3)	31861	NA	0	12	10	12
P-0014478-T01-IM6	SOMATIC	UTS2	PIK3CD	1	1	7922466	9787000	IGR: 15Kb before UTS2(-)	Exon 24 of PIK3CD(+)	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: chr1:g.7922466_c.3031del	PRECISE		MANUAL_OK	3to5	-	1864534	NA	0	33	60	33
P-0014478-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55207651	55222156	Intron of EGFR(+): 2Kb before exon 2	Intron of EGFR(+): 311bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.89-2328_c.889+311del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	14505	NA	0	29	38	25
P-0012689-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55197840	55222080	Intron of EGFR(+): 12Kb before exon 2	Intron of EGFR(+): 235bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-12139_c.889+235del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	24240	NA	0	101	193	397
P-0012327-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40022882	42871029	5-UTR of ERG(-): 75Kb before coding start	Intron of TMPRSS2(-): 913bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 2-11) : c.56-913:TMPRSS2_c.-150+10700:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2848147	NA	0	29	35	28
P-0013749-T01-IM5	SOMATIC	MEN1	MEN1	11	11	64575100	64577175	Exon 5 of MEN1(-)	Exon 3 of MEN1(-)	GRCh37	DELETION	MEN1 (NM_000244) Rearrangement : c.407_722del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2075	NA	0	17	52	17
P-0012199-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151866195	152105247	Intron of MLL3(-): 76bp after exon 41	Intron of MLL3(-): 27Kb after exon 1	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement: c.161+27464_c.9517+76dup	PRECISE		MANUAL_OK	5to3	Duplication of 40 exons: out of frame	239052	NA	0	7	12	7
P-0010252-T01-IM5	SOMATIC	CELF2	APC	10	5	11385531	112102954	IGR: 7Kb after CELF2(+)	Exon 4 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;10)(q22.2;p14)(chr5:g.112102954::chr10:g.11385531)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	70	21	69
P-0011180-T01-IM5	SOMATIC	NRG1	CD74	8	5	32513214	149782758	Intron of NRG1(+): 7Kb after exon 1	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149782758::chr8:g.32513214)	IMPRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CD74-NRG1)	0	NA	0	8	0	7
P-0014635-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974547	21981216	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 10Kb before exon 2	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.150+130:CDKN2Ap16INK4A_chr9:21981216inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	6669	NA	0	11	16	11
P-0010934-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55210059	55221966	Exon 2 of EGFR(+)	Intron of EGFR(+): 121bp after exon 7	GRCh37	DELETION	EFGR VIII Intragenic deletion:  c.169_889+121del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	11907	NA	0	12	12	12
P-0014464-T01-IM6	SOMATIC	NF1	NF1	17	17	29670144	29672194	Exon 47 of NF1(+)	Intron of NF1(+): 2Kb after exon 47	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement : c.7180_c.7189+2041del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2050	NA	0	31	39	31
P-0006311-T02-IM5	SOMATIC	PRKAG1	MLL2	12	12	49410055	49426554	Intron of PRKAG1(-): 2Kb after exon 1	Exon 39 of MLL2(-)	GRCh37	DUPLICATION	PRKAG1 (NM_002733) - MLL2 (NM_003482) Rearrangement : c.9+2460:PRKAG1_c.11934:MLL2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (PRKAG1-MLL2)	16499	NA	0	23	38	23
P-0014421-T01-IM6	SOMATIC	DNMT1	FRAT2	19	10	10244272	99096319	3-UTR of DNMT1(-): 71bp after coding stop	Promoter of FRAT2(-): 2Kb from tx start	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(10;19)(q24.1; p13.2)(chr10:g.99096319::chr19:g.10244272)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	20	18
P-0013417-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37618651	37661090	Exon 1 of CDK12(+)	Intron of CDK12(+): 3Kb after exon 6	GRCh37	DUPLICATION	CDK12 (NM_016507) Rearrangement : c.327_2609+3398dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	42439	NA	0	59	64	57
P-0014597-T01-IM6	SOMATIC	TMEM132C	POLE	12	12	128237816	133250299	IGR: 514Kb before TMEM132C(+)	Intron of POLE(-): 6bp before exon 13	GRCh37	INVERSION	POLE (NM_006231) rearrangement: chr12:g.128237816_c.1227-6:POLEinv	PRECISE		MANUAL_OK	3to3	-	5012483	NA	0	12	21	12
P-0014264-T01-IM6	SOMATIC	BAP1	PHC3	3	3	52442379	169854550	Intron of BAP1(-): 111bp after exon 4	Intron of PHC3(-): 97bp before exon 7	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.255+111:BAP1_chr3:g.169854550inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	117412171	NA	0	7	10	7
P-0010222-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21971039	22027267	Exon 2 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 94Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.319:CDKN2Ap16INK4A_chr9:g.22027267del CDKN2Ap14ARF (NM_058195) rearrangement : c.362:CDKN2Ap14ARF_chr9:g.22027267del	PRECISE		MANUAL_OK	3to5	-	56228	NA	0	13	17	13
P-0000541-T02-IM5	SOMATIC	MEN1	MEN1	11	11	64571863	64572615	Exon 11 of MEN1(-)	Exon 10 of MEN1(-)	GRCh37	DELETION	MEN1 (NM_000244) rearrangement : c.1256_1791del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	752	NA	0	13	0	12
P-0010171-T01-IM5	SOMATIC	C2orf67	ARID1A	2	1	210926778	27059158	Intron of C2orf67(-): 13Kb after exon 6	Intron of ARID1A(+): 9bp before exon 4	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;2)(p36.11;q34)(chr1:g.27059158::chr2:g.210926778)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	25	12	24
P-0013579-T01-IM5	SOMATIC	SFI1	PTEN	22	10	31891185	89653741	Promoter of SFI1(+): 1Kb from tx start	Intron of PTEN(+): 41bp before exon 2	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;22)(q23.31;q12.2)(chr10:g.89653741::chr22:g.31891185)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	13	33
P-0012373-T01-IM5	SOMATIC	MBD3	TCF3	19	19	1589382	1612135	Intron of MBD3(-): 3Kb after exon 1	Intron of TCF3(-): 71bp after exon 17	GRCh37	DELETION	TCF3 (NM_001136139) - MBD3 (NM_003926) rearrangement: c.1813+71:TCF3_c.110+3139:MBD3del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TCF3-MBD3)	22753	NA	0	10	7	9
P-0012373-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739255	1808730	Intron of TACC3(+): 70bp before exon 10	Intron of FGFR3(+): 69bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 with TACC3 exons 10-16 ): c.2274+69:FGFR3_c.1837-70:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	69475	NA	0	33	25	32
P-0013412-T01-IM5	SOMATIC	ERBB3	API5	12	11	56495675	43257266	Exon 28 of ERBB3(+)	IGR: 76Kb before API5(+)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) Rearrangement : t(11;12)(11p12;12q13.3)(chr11:g.43257266::chr12:g.56495675)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	30	0	28
P-0013412-T01-IM5	SOMATIC	AXIN2	PRKCA	17	17	63533611	64812120	Exon 6 of AXIN2(-)	IGR: 5Kb after PRKCA(+)	GRCh37	DELETION	AXIN2 (NM_004655) Rearrangement : c.1543_chr17:g.64812120del	PRECISE		MANUAL_OK	3to5	-	1278509	NA	0	32	55	32
P-0013379-T01-IM5	SOMATIC	ARID1A	PIGV	1	1	27024099	27117015	Intron of ARID1A(+): 68bp after exon 1	5-UTR of PIGV(+): 292bp before coding start	GRCh37	DELETION	ARID1A (NM_006015) - PIGV (NM_017837) rearrangement: c.1137+68:ARID1A_c.-57-235:PIGVdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (ARID1A-PIGV)	92916	NA	0	8	13	8
P-0011526-T01-IM5	SOMATIC	CTDSPL	MYD88	3	3	37935431	38182682	Intron of CTDSPL(+): 32Kb after exon 1	Exon 5 of MYD88(+)	GRCh37	DUPLICATION	MYD88 (NM_002468) -  CTDSPL (NM_001008392) Rearrangement :  c.835:MYD88_c.79+31662:CTDSPLdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MYD88-CTDSPL)	247251	NA	0	49	64	49
P-0011364-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876280	42877201	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11) : c.55+2676:TMPRSS2_c.40-58736:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3000921	NA	0	17	31	18
P-0011066-T01-IM5	SOMATIC	FAM123B	FAM123B	X	X	63410124	63415377	Exon 2 of FAM123B(-)	5-UTR of FAM123B(-): 2Kb before coding start	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.-98-2113_c.3043del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5253	NA	0	35	35	34
P-0014624-T02-IM6	SOMATIC	CALR	RAD23A	19	19	13051812	13058313	Intron of CALR(+): 111bp after exon 7	Intron of RAD23A(+): 349bp before exon 2	GRCh37	DELETION	CALR (NM_004343) - RAD23A (NM_005053) Rearrangement : c.960+111:CALR_c.73-349:RAD23Adel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CALR-RAD23A)	6501	NA	0	17	15	17
P-0014624-T02-IM6	SOMATIC	LCP2	EPAS1	5	2	169707068	46588195	Intron of LCP2(-): 4Kb before exon 4	Exon 6 of EPAS1(+)	GRCh37	TRANSLOCATION	LCP2 (NM_005565)- EPAS1 (NM_001430) Rearrangement : t(2;5)(p21;q35.1)(chr2:g.46588195::chr5:g.169707068)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (LCP2-EPAS1)	0	NA	0	14	12	14
P-0000584-T02-IM5	SOMATIC	MAP3K14	PRKCA	17	17	43344831	64282318	Exon 12 of MAP3K14(-)	IGR: 17Kb before PRKCA(+)	GRCh37	INVERSION	MAP3K14 (NM_003954): chr17:g.64282318_c.2267:MAP3K14inv	PRECISE		MANUAL_OK	5to5	-	20937487	NA	0	9	17	7
P-0012360-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55130978	55223449	Intron of EGFR(+): 44Kb after exon 1	Intron of EGFR(+): 74bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+43920_c.890-74del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	92471	NA	0	102	159	389
P-0010712-T01-IM5	SOMATIC	AKT1	AKT1	14	14	105237184	105238701	Exon 13 of AKT1(-)	Intron of AKT1(-): 1bp after exon 12	GRCh37	DELETION	AKT1 (NM_001014431) Rearrangement : c.1260+1_c.1261del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1517	NA	0	35	65	35
P-0010712-T01-IM5	SOMATIC	AXIN2	AXIN2	17	17	63533831	63544910	Exon 6 of AXIN2(-)	Intron of AXIN2(-): 728bp after exon 3	GRCh37	DELETION	AXIN2 (NM_004655) Rearrangement :  c.956+728_c.1323del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	11079	NA	0	19	34	18
P-0013672-T01-IM5	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21971003	21971577	3-UTR of CDKN2Ap14ARF(-): 66bp after exon 2 stop codon	Intron of CDKN2Ap14ARF(-): 370bp before exon 2	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.194-370_c.398del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	574	NA	NA	15	0	NA
P-0013672-T01-IM5	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21971003	21971577	Exon 2 of CDKN2Ap16INK4(-)	Intron of CDKN2Ap16INK4(-): 370bp before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement:  c.151-370_c.355del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	574	NA	NA	15	0	NA
P-0012782-T01-IM5	SOMATIC	FERMT1	PAK7	20	20	6319114	9524889	IGR: 264Kb before FERMT1(-)	Intron of PAK7(-): 127bp after exon 9	GRCh37	DELETION	PAK7 (NM_177990) rearrangement: chr20:g.9524889_c.1869+127:PAK7del	PRECISE		MANUAL_OK	3to5	-	3205775	NA	0	19	19	19
P-0014481-T01-IM6	SOMATIC	MLL3	ACTR3B	7	7	151874945	152705153	Exon 38 of MLL3(-)	IGR: 248Kb before ACTR3B(+)	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement: c.7593_chr7:g.152705153dup	PRECISE		MANUAL_OK	5to3	-	830208	NA	0	16	26	15
P-0010338-T01-IM5	SOMATIC	ATRX	C14orf176	X	14	76918982	21586971	Exon 12 of ATRX(-)	IGR: 20Kb before C14orf176(+)	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement : t(X;14)(q21.1;q11.2)(chrX:g.76918982::chr14:g.21586971)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	43	23	40
P-0014004-T01-IM5	SOMATIC	CDC42EP5	TNFRSF14	19	1	54979682	2494783	5-UTR of CDC42EP5(-): 3Kb before coding start	3-UTR of TNFRSF14(+): 71bp after coding stop	GRCh37	TRANSLOCATION	TNFRSF14 (NM_003820) rearrangement: t(1;19)(p36.32; q13.42)(chr1:g.2494783::chr19:g.54979682)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	102	0	99
P-0014004-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876954	42876049	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3828_c.40-59410del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2999095	NA	0	102	127	244
P-0014797-T01-IM6	SOMATIC	CD74	B3GNT7	5	2	149784283	232240463	Exon 6 of CD74(-)	IGR: 20Kb before B3GNT7(+)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) rearrangement: t(2;5)(q37.1;q32)(chr2:g.232240463::chr5:g.149784283)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	8	7
P-0014935-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859468	42876271	Intron of TMPRSS2(-): 853bp after exon 5	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) Rearrangement : c.55+3606_556+853dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons: in frame	16803	NA	0	66	56	63
P-0013864-T01-IM5	SOMATIC	ALK	EML4	2	2	29448209	42523314	Intron of ALK(-): 118bp after exon 19	Intron of EML4(+): 658bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1 to 13 with exons 20-29 of ALK) : c.1489+658:EML4_c.3172+118:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13075105	NA	0	102	76	107
P-0014596-T01-IM6	SOMATIC	CD180	PIK3R1	5	5	66569460	67593184	IGR: 91Kb before CD180(-)	Intron of PIK3R1(+): 56bp before exon 10	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1986-56_chr5:g.66569460inv	PRECISE		MANUAL_OK	5to5	-	1023724	NA	0	18	17	17
P-0014437-T01-IM6	SOMATIC	ROS1	EZR	6	6	117650363	159191567	Intron of ROS1(-): 129bp after exon 32	Intron of EZR(-): 229bp after exon 9	GRCh37	DELETION	ROS1 (NM_002944) _EZR (NM_003379) rearrangement: c.1090+229:EZR_c.5366+129:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EZR-ROS1)	41541204	NA	0	33	44	31
P-0011196-T01-IM5	SOMATIC	TP53	DLEU7	17	13	7579381	51355702	Exon 4 of TP53(-)	Intron of DLEU7(-): 62Kb after exon 1	GRCh37	TRANSLOCATION	TP53 (NM_000546) - DLEU7 (NM_198989) rearrangement : t(13;17)(q14.13;p13.1)(chr13:g.51355702:chr17:7579381)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	19	13	17
P-0011196-T01-IM5	SOMATIC	TP53	TP53	17	17	7577516	7583113	Exon 7 of TP53(-)	5-UTR of TP53(-): 3Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement : c.-28-3173_765dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5597	NA	0	49	39	41
P-0010184-T01-IM5	SOMATIC	TFE3	FUBP1	X	1	48895840	78424093	Exon 4 of TFE3(-)	Intron of FUBP1(-): 2Kb before exon 17	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) - TFE3 (NM_006521) rearrangement: t(1;X)(p31.1;p11.23)(chr1:g.78424093::chrX:g.48895840)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (FUBP1-TFE3)	0	NA	0	15	18	15
P-0013581-T01-IM5	SOMATIC	NAB2	CRYGD	12	2	57486085	208954428	Intron of NAB2(+): 146bp before exon 3	IGR: 32Kb before CRYGD(-)	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(2;12)(q33.3;q13.3)(chr2:g.208954428::chr12:g.57486085)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	25	0	22
P-0012197-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39909429	42872650	Intron of ERG(-): 38Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099 - ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 4-11 ): c.56-2534_c.39+38157del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2963221	NA	0	56	57	53
P-0006268-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55240917	55269188	Intron of EGFR(+): 100bp after exon 17	Intron of EGFR(+): 140bp after exon 25	GRCh37	DUPLICATION	EGFR (NM_005228) Rearrangement : c.2061+100_3114+140dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	28271	NA	0	46	47	40
P-0010850-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55203658	55223113	Intron of EGFR(+): 6Kb before exon 2	Intron of EGFR(+): 410bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII deletion: c.89-6321_c.890-410del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	19455	NA	0	97	102	191
P-0014879-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61721176	61724984	Exon 12 of XPO1(-)	Intron of XPO1(-): 824bp after exon 9	GRCh37	DUPLICATION	XPO1 (NM_003400) rearrangement: c.1098_c.759+824dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3808	NA	0	9	11	9
P-0012105-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2125542	2129636	Intron of TSC2(+): 258bp before exon 23	Exon 29 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) Rearrangement : c.2546-258_c.3363dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	4094	NA	0	23	57	23
P-0012105-T01-IM5	SOMATIC	PIK3R2	PIK3R2	19	19	18272283	18277180	Exon 6 of PIK3R2(+)	Intron of PIK3R2(+): 68bp after exon 12	GRCh37	DUPLICATION	PIK3R2 (NM_005027) Rearrangement : c.793_c.1559+68dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	4897	NA	0	8	8	8
P-0012578-T01-IM5	SOMATIC	RB1	LRCH3	13	3	48916931	197595964	Intron of RB1(+): 81bp after exon 3	Intron of LRCH3(+): 1Kb before exon 18	GRCh37	TRANSLOCATION	RB1 (NM_000321) - LRCH3 (NM_032773) rearrangement: t(3;13)(q29;q14.2)(chr3:g.197595964::chr13:g.48916931)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	49	22	44
P-0012967-T01-IM5	SOMATIC	CARD11	CREB5	7	7	2956957	28640368	Exon 20 of CARD11(-)	Intron of CREB5(+): 30Kb after exon 4	GRCh37	INVERSION	CARD11 (NM_032415) - CREB5 (NM_182898) rearrangement: c.2670:CARD11_c.464+30213:CREB5inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CARD11-CREB5)	25683411	NA	0	21	41	20
P-0012967-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55200487	55222251	Intron of EGFR(+): 9Kb before exon 2	Intron of EGFR(+): 406bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-9492_c.889+406del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	21764	NA	1	102	174	342
P-0010271-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21968241	21970900	Exon 3 of CDKN2A(-)	Intron of CDKN2A(-): 1bp after exon 2	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.*101+1_c.*102del CDKN2Ap16INK4A (NM_00007) rearrangement: c.457+1_c.458del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2659	NA	0	44	72	44
P-0010271-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971205	21994135	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 3bp after exon 1	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.193+3_c.196del CDKN2Ap16INK4A (NM_00007) rearrangement: chr9:g.21994135_c.153del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	22930	NA	0	21	37	13
P-0013503-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858543	42875717	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+4160:TMPRSS2_c.18+11744:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3017174	NA	0	57	59	55
P-0014391-T01-IM6	SOMATIC	RTEL1	ZGPAT	20	20	62326238	62353066	Exon 32 of RTEL1(+)	Intron of ZGPAT(+): 12Kb before exon 3	GRCh37	DUPLICATION	ZGPAT (NM_032527) - RTEL1 (NM_032957) rearrangement: c.585-11505:ZGPAT_c.3326:RTEL1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ZGPAT-RTEL1)	26828	NA	0	84	89	84
P-0010159-T01-IM5	SOMATIC	RBM10	PHIP	X	6	47004857	79678650	5-UTR of RBM10(+): 2Kb before coding start	Intron of PHIP(-): 902bp after exon 27	GRCh37	TRANSLOCATION	RBM10 (NM_001204468) - PHIP (NM_017934) rearrangement: t(6;X)(q14.1;p11.23)(chr6:g.79678650::chrX:g.47004857)	PRECISE		MANUAL_OK	3to3	Transcript fusion (RBM10-PHIP)	0	NA	0	9	5	9
P-0010336-T01-IM5	SOMATIC	IKBKE	SIPA1L2	1	1	206649940	232376252	Intron of IKBKE(+): 81bp before exon 7	IGR: 157Kb before SIPA1L2(-)	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement : c.541-81:IKBKE_chr1:g.232376252inv	PRECISE		MANUAL_OK	5to5	-	25726312	NA	0	12	15	12
P-0010336-T01-IM5	SOMATIC	MYO18A	NF1	17	17	27441038	29422225	Exon 15 of MYO18A(-)	5-UTR of NF1(+): 103bp before coding start	GRCh37	INVERSION	MYO18A (NM_078471) - NF1 (NM_001042492) rearrangement : .2589:MYO18A_c.-103:NF1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (MYO18A-NF1)	1981187	NA	0	15	19	14
P-0013948-T01-IM5	SOMATIC	KCNH3	TBX3	12	12	49933359	115111938	Intron of KCNH3(+): 84bp after exon 1	Intron of TBX3(-): 32bp after exon 6	GRCh37	INVERSION	TBX3 (NM_016569) - KCNH3 (NM_012284) rearrangement: c.1770+32:TBX3_c.76+84:KCNH3inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (TBX3-KCNH3)	65178579	NA	0	12	12	12
P-0013733-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867506	42868379	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1667:TMPRSS2_c.18+2781:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3000873	NA	0	35	53	35
P-0015026-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42871193	42903820	Intron of TMPRSS2(-): 1Kb before exon 2	IGR: 24Kb after TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: chr21:g.42903820_c.56-1077del	PRECISE		MANUAL_OK	3to5	-	32627	NA	0	47	52	42
P-0015026-T01-IM6	SOMATIC	TMPRSS2	U2AF1	21	21	42871248	44526473	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of U2AF1(-): 1Kb after exon 1	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) - U2AF1 (NM_006758) rearrangement: c.56-1132:TMPRSS2_c.44+1088:U2AF1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-U2AF1)	1655225	NA	0	31	50	29
P-0014412-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876520	42871047	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 931bp before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-58976:ERG_c.56-931:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2994527	NA	0	10	16	8
P-0014412-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42866007	42871050	Intron of TMPRSS2(-): 276bp after exon 3	Intron of TMPRSS2(-): 934bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-934_c.349+276inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	5043	NA	0	17	27	17
P-0013394-T01-IM5	SOMATIC	RET	CCDC6	10	10	43610232	61646996	Intron of RET(+): 48bp after exon 11	Intron of CCDC6(-): 19Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+18884:CCDC6_c.2136+48:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18036764	NA	0	32	41	29
P-0010050-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14224485	14627893	Intron of PRKACA(-): 461bp after exon 1	Intron of DNAJB1(-): 35bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) Fusion (DNAJB1 exon 1 fused to PRKACA exons 2-10):c.212-35:DNAJB1_c.46+3829:PRAKACA1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	403408	NA	0	31	54	31
P-0011554-T01-IM5	SOMATIC	CWF19L2	CHEK1	11	11	107213566	125503177	Intron of CWF19L2(-): 6Kb after exon 14	Exon 6 of CHEK1(+)	GRCh37	DELETION	CHEK1 (NM_001274) rearrangement: chr11:g.107213566_c.544:CHEK1del	PRECISE		MANUAL_OK	3to5	-	18289611	NA	0	15	22	15
P-0013867-T01-IM5	SOMATIC	RHOA	SUCLG2	3	3	49397702	67552219	Exon 5 of RHOA(-)	Intron of SUCLG2(-): 4Kb before exon 8	GRCh37	INVERSION	RHOA (NM_001664) Rearrangement : c.522:RHOA_c.758-3500:SUCLG2inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	18154517	NA	0	26	54	26
P-0010604-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151845987	151864371	Exon 52 of MLL3(-)	Exon 42 of MLL3(-)	GRCh37	DELETION	MLL3 rearrangement: c.9610_c.13025del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	18384	NA	0	85	65	80
P-0012525-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647385	149783203	Intron of ROS1(-): 2bp after exon 33	Intron of CD74(-): 328bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1(NM_002944) fusion (CD74 exons 1-6 with ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783203::chr6:g.117647385)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	11	21	3
P-0010794-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866982	42870148	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 32bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-32:TMPRSS2_c.18+3305:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3003166	NA	0	8	16	8
P-0010610-T01-IM5	SOMATIC	PTPN22	VTCN1	1	1	114406772	117699038	Intron of PTPN22(-): 5Kb before exon 2	Intron of VTCN1(-): 158bp after exon 3	GRCh37	DELETION	VTCN1 (NM_024626) - PTPN22 (NM_015967) rearrangement: c.445+158:VTCN1_c.88-4690:PTPN22del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (VTCN1-PTPN22)	3292266	NA	0	6	7	6
P-0010610-T01-IM5	SOMATIC	EPHA3	EPHA3	3	3	89444103	89444995	Intron of EPHA3(+): 884bp before exon 6	Exon 6 of EPHA3(+)	GRCh37	DELETION	EPHA3 (NM_005233) rearrangement: c.1307-884_c.1315del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	892	NA	0	21	0	20
P-0011367-T01-IM5	SOMATIC	MLL2	ZNF804A	12	2	49425579	185336965	Exon 39 of MLL2(-)	IGR: 126Kb before ZNF804A(+)	GRCh37	TRANSLOCATION	MLL2 (NM_003482) Rearrangement   : t(2;12)(q32.1;q13.12)(chr2:g.185336965::chr12:g.185336965)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	25	24
P-0011367-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44894734	44966525	Intron of KDM6A(+): 504bp after exon 7	Intron of KDM6A(+): 130bp before exon 27	GRCh37	DELETION	KDM6A (NM_021140) Rearrangement :  c.619+504_3879-130del	PRECISE		MANUAL_OK	3to5	Deletion of 19 exons: out of frame	71791	NA	0	24	22	21
P-0012451-T01-IM5	SOMATIC	CCDC21	NOTCH2	1	1	26564569	120469049	5-UTR of CCDC21(+): 2Kb before coding start	Intron of NOTCH2(-): 73bp after exon 24	GRCh37	DELETION	NOTCH2 (NM_024408)  Rearrangement : c.4005+73:NOTCH2_chr.1:g.26564569del	PRECISE		MANUAL_OK	3to5	Antisense fusion	93904480	NA	0	62	52	60
P-0011376-T01-IM5	SOMATIC	ETV6	ETV6	12	12	12013458	12042294	Intron of ETV6(+): 7Kb after exon 4	Intron of ETV6(+): 2Kb before exon 8	GRCh37	DUPLICATION	ETV6 (NM_001987) Rearrangement :  c.463+6963_c.1254-1581dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	28836	NA	0	13	22	13
P-0011376-T01-IM5	SOMATIC	PLCXD2	GATA2	3	3	111421357	128200195	Intron of PLCXD2(+): 5Kb before exon 2	Intron of GATA2(-): 34bp before exon 6	GRCh37	INVERSION	PLCXD2 (NM_153268) -GATA2(NM_032638) Rearrangement :  c.164-5416:PLCXD2 _c.1144-34:GATA2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (PLCXD2-GATA2)	16778838	NA	0	10	17	9
P-0014257-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3786681	3890400	Exon 27 of CREBBP(-)	Intron of CREBBP(-): 10Kb after exon 2	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement : c.798+9898_4530dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	103719	NA	0	28	32	28
P-0010426-T01-IM5	SOMATIC	TBX3	TBX3	12	12	115115929	115117762	Intron of TBX3(-): 468bp before exon 4	Exon 3 of TBX3(-)	GRCh37	INVERSION	TBX3 (NM_016569) Rearrangement :  c.673_c.865-468inv	PRECISE		MANUAL_OK	3to3	-	1833	NA	0	22	48	21
P-0010066-T01-IM5	SOMATIC	MGA	PLA2G4F	15	15	41989163	42450405	Exon 3 of MGA(+)	Promoter of PLA2G4F(-): 2Kb from tx start	GRCh37	DELETION	MGA (NM_001164273): c.1955:MGA_chr15:g.42450405del	PRECISE		MANUAL_OK	3to5	Antisense fusion	461242	NA	0	96	97	96
P-0010066-T01-IM5	SOMATIC	BBC3	BBC3	19	19	47726786	47729955	Intron of BBC3(-): 2Kb before exon 2	Exon 2 of BBC3(-)	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: c.434_c.569-1611del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3169	NA	0	16	39	14
P-0013911-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876009	42871178	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) Rearrangement: c.40-58465:ERG_c.56-1062:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2995169	NA	0	28	66	28
P-0014225-T01-IM6	SOMATIC	MX1	TMPRSS2	21	21	42817175	42842711	Intron of MX1(+): 200bp before exon 12	Intron of TMPRSS2(-): 41bp before exon 11	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) Rearrangement : c.1187-41:TMPRSS2_c.1009-200:MX1dup	PRECISE		MANUAL_OK	5to3	-	25536	NA	0	15	20	15
P-0013154-T01-IM5	SOMATIC	CDH1	CDH1	16	16	68846999	68849283	Intron of CDH1(+): 217bp before exon 9	Intron of CDH1(+): 135bp before exon 10	GRCh37	DELETION	CDH1 (NM_004360)  Rearrangement : c.1138-217_1321-135del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2284	NA	0	9	8	8
P-0013154-T01-IM5	SOMATIC	FARSA	CALR	19	19	13039909	13050078	Intron of FARSA(-): 248bp before exon 5	Intron of CALR(+): 29bp after exon 2	GRCh37	INVERSION	CALR (NM_004343) - FARSA (NM_004461) Rearrangement : c.193+29:CALR_c.504-248:FARSAinv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (CALR-FARSA)	10169	NA	0	54	50	53
P-0013154-T01-IM5	SOMATIC	ZCWPW2	SETD2	3	3	28794641	47061283	IGR: 363Kb before ZCWPW2(+)	Exon 19 of SETD2(-)	GRCh37	INVERSION	SETD2 (NM_014159) Rearrangement : c.7398:SETD2_chr3:g.28794641inv	PRECISE		MANUAL_OK	3to3	-	18266642	NA	0	8	21	8
P-0001876-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39810725	42870613	Intron of ERG(-): 7Kb after exon 4	Intron of TMPRSS2(-): 497bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (Exon 1 of TMPRSS2 fused to exons 5-10 of ERG): c.56-497:TMPRSS2_c.236+6602:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3059888	NA	0	86	76	83
P-0012509-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55206342	55223384	Intron of EGFR(+): 4Kb before exon 2	Intron of EGFR(+): 139bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-3637_c.890-139del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	17042	NA	0	10	10	10
P-0014222-T01-IM6	SOMATIC	CRKL	RASGEF1C	22	5	21288518	179616450	Exon 2 of CRKL(+)	5-UTR of RASGEF1C(-): 51Kb before coding start	GRCh37	TRANSLOCATION	CRKL (NM_005207) - RASGEF1C (NM_175062) Rearrangement :  t(5;22)(q35.3;q11.21)(chr5:g.179616450::chr22:g.21288518)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (CRKL-RASGEF1C)	0	NA	0	11	5	11
P-0012087-T01-IM5	SOMATIC	ERBB2	RARA	17	17	37883917	38491872	Intron of ERBB2(+): 25bp before exon 27	Intron of RARA(+): 4Kb after exon 2	GRCh37	DUPLICATION	RARA (NM_000964) - ERBB2 (NM_004448) rearrangement: c.178+4224:RARA_c.3413-25:ERRB2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (RARA-ERBB2)	607955	NA	0	61	102	46
P-0010172-T01-IM5	SOMATIC	CREBBP	TSG1	16	6	3843541	94711700	Exon 4 of CREBBP(-)	IGR: 295Kb before TSG1(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(6;16)(q16.1;p13.3)(chr6:g.94711700::chr16:g.3843541)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	13	9
P-0010172-T01-IM5	SOMATIC	SOX2	SOX2OT	3	3	181430988	181432224	Exon 1 of SOX2(+)	5-UTR of SOX2OT(+): 27Kb before coding start	GRCh37	DELETION	SOX2 (NM_003106) rearrangement: c.840_c.*1122del	IMPRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SOX2-SOX2OT)	1236	NA	0	12	0	12
P-0012177-T01-IM5	SOMATIC	ABCD2	MLL2	12	12	39927537	49430957	IGR: 17Kb before ABCD2(-)	Exon 34 of MLL2(-)	GRCh37	INVERSION	MLL2 (NM_003482) Rearrangement : chr12:39927537_c.10182:MLL2inv	PRECISE		MANUAL_OK	5to5	-	9503420	NA	0	102	363	378
P-0013957-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872154	42875289	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion: c.55+4588:TMPRSS2_c.40-54610:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3003135	NA	0	8	13	8
P-0010760-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647234	149783763	Intron of ROS1(-): 153bp after exon 33	Intron of CD74(-): 480bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(5q32;6q22.1)(chr5:g.149783763::chr6:g.117647234 )	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	27	16	26
P-0012204-T01-IM5	SOMATIC	FAM124B	CUL3	2	2	225177488	225365168	IGR: 66Kb before FAM124B(-)	Exon 11 of CUL3(-)	GRCh37	DELETION	CUL3 (NM_003590) rearrangement: chr2:g.225177488_c.1522:CUL3del	PRECISE		MANUAL_OK	3to5	-	187680	NA	0	23	32	22
P-0011544-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55202269	55223379	Intron of EGFR(+): 8Kb before exon 2	Intron of EGFR(+): 144bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII rearrangement: c.89-7710_c.890-144del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	21110	NA	0	102	86	157
P-0013378-T01-IM5	SOMATIC	NF1	RHOT1	17	17	29546096	30462039	Exon 14 of NF1(+)	IGR: 7Kb before RHOT1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.1601_chr17:g.30462039del	PRECISE		MANUAL_OK	3to5	-	915943	NA	0	102	90	112
P-0014527-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38057086	38060645	IGR: 2Kb before FOXA1(-)	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) Rearrangement: chr14:g.38057086_c.1344:FOXA1del	PRECISE		MANUAL_OK	3to5	-	3559	NA	0	6	6	6
P-0013245-T01-IM5	SOMATIC	ACPP	ATR	3	3	132075716	142226990	Exon 10 of ACPP(+)	Intron of ATR(-): 39bp before exon 28	GRCh37	INVERSION	ACPP (NM_001134194) - ATR (NM_001184) rearrangement: c.1138+17:ACPP_c.4853-39:ATRinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ACPP-ATR)	10151274	NA	0	8	9	8
P-0014276-T01-IM6	SOMATIC	TMEM132E	ERBB2	17	17	33011152	37880204	IGR: 45Kb after TMEM132E(+)	Exon 19 of ERBB2(+)	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: chr17:g.33011152_c.2248:ERBB2del	PRECISE		MANUAL_OK	3to5	-	4869052	NA	0	84	76	75
P-0010507-T01-IM5	SOMATIC	NOTCH3	CNTNAP4	19	16	15291977	76278026	Intron of NOTCH3(-): 4bp before exon 18	IGR: 33Kb before CNTNAP4(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement : t(16;19)(q23.1;p13.12)(chr16:g.76278026::chr19:g.15291977)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	11	19
P-0010507-T01-IM5	SOMATIC	STK11	STK11	19	19	1218719	1221946	Intron of STK11(+): 220bp after exon 2	Intron of STK11(+): 2bp before exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement : c.374+220_863-2del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: out of frame	3227	NA	0	19	20	17
P-0013724-T01-IM5	SOMATIC	MIR384	ATRX	X	X	76184089	76891356	IGR: 44Kb before MIR384(-)	Intron of ATRX(-): 50bp after exon 16	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: chrX:g.76184089_c.4699+50:ATRXinv	PRECISE		MANUAL_OK	5to5	-	707267	NA	0	17	26	15
P-0014403-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37508832	37682171	Intron of FBXL20(-): 9Kb before exon 2	Exon 13 of CDK12(+)	GRCh37	INVERSION	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.43-9338:FBXL20_c.3362:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (FBXL20-CDK12)	173339	NA	0	6	9	6
P-0013064-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55240948	55269509	Intron of EGFR(+): 131bp after exon 17	Intron of EGFR(+): 34bp after exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+131_c.3162+34dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons: in frame	28561	NA	0	96	859	1138
P-0015085-T01-IM6	SOMATIC	NOTCH3	MZF1	19	19	15308288	59077190	Intron of NOTCH3(-): 23bp after exon 2	Intron of MZF1(-): 2Kb before exon 6	GRCh37	INVERSION	NOTCH3 (NM_000435) - MZF1 (NM_003422) rearrangement: c.197+23:NOTCH3_c.773-2319:MZF1	PRECISE		MANUAL_OK	5to5	Antisense fusion	43768902	NA	0	10	32	9
P-0010015-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39861384	42871490	Intron of ERG(-): 9Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 fused with ERG exons 2-9): c.56-1374:TMPRSS2_c.18+8903:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3010106	NA	0	102	80	112
P-0010221-T01-IM5	SOMATIC	EIF3G	JAK3	19	19	10234948	17955027	IGR: 4Kb after EIF3G(-)	Intron of JAK3(-): 16bp after exon 2	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement : c.184+16:JAK3_chr19:g.10234948inv	PRECISE		MANUAL_OK	5to5	-	7720079	NA	0	11	29	11
P-0011111-T01-IM5	SOMATIC	JHDM1D	BRAF	7	7	139789222	140484788	3-UTR of JHDM1D(-): 2Kb after coding stop	Intron of BRAF(-): 2Kb before exon 10	GRCh37	DELETION	BRAF (NM_004333) - JHDM1D (NM_030647) rearrangement: c.1178-1831:BRAF_c.*1672:JHDM1Ddel	PRECISE		MANUAL_OK	3to5	-	695566	NA	0	7	13	7
P-0010302-T01-IM5	SOMATIC	CDKN2A	TEK	9	9	21971082	27073171	Exon 2 of CDKN2A(-)	IGR: 36Kb before TEK(+)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) Rearrangement : c.442:CDKN2Ap14ARF _chr9:g.27073171del CDKN2Ap16INK4A (NM_000077) Rearrangement : c.276:CDKN2Ap16INK4A_chr9:g.27073171del	PRECISE		MANUAL_OK	3to5	-	5102089	NA	0	20	29	15
P-0011203-T02-IM5	SOMATIC	ALK	EML4	2	2	29447096	42501185	Intron of ALK(-): 702bp before exon 20	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-6805:EML4_c.3173-702:ALKinv	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13054089	NA	0	9	0	9
P-0004605-T02-IM5	SOMATIC	BRMS1L	RB1	14	13	36312640	48877982	Intron of BRMS1L(+): 9Kb after exon 4	5-UTR of RB1(+): 67bp before coding start	GRCh37	TRANSLOCATION	RB1(NM_000321) - BRMS1L (NM_032352) rearrangement : t(13;14)(q14.2;q13.2)(chr13:g.48877982::chr14:g.36312640)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	86	31	71
P-0010613-T01-IM5	SOMATIC	BRCA2	CLYBL	13	13	32953554	100271547	Exon 22 of BRCA2(+)	Intron of CLYBL(+): 13Kb after exon 1	GRCh37	DELETION	BRCA2 (NM_000059) - CLYBL (NM_206808) rearrangement: c.8855:BRCA2_c.62+12536:CLYBLdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (BRCA2-CLYBL)	67317993	NA	0	61	89	60
P-0014861-T01-IM6	SOMATIC	PTPRS	MYO1F	19	19	5243887	8616075	Intron of PTPRS(-): 25bp after exon 8	Intron of MYO1F(-): 497bp before exon 9	GRCh37	INVERSION	MYO1F (NM_012335) - PTPRS (NM_002850) rearrangement: c.772-497:MYO1F_c.1570+25:PTPRS_inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	3372188	NA	0	18	53	16
P-0012845-T01-IM5	SOMATIC	TERT	BRE	5	2	1295322	28205047	Promoter of TERT(-): 160bp from tx start	Intron of BRE(+): 6Kb before exon 4	GRCh37	TRANSLOCATION	BRE (NM_004899) - TERT (NM_198253) rearrangement: t(2;5)(p23.2;p15.33)(chr2:g.28205047::chr5:g.1295322)	PRECISE		MANUAL_OK	3to3	Transcript fusion (BRE-TERT)	0	NA	0	55	55	55
P-0010093-T01-IM5	SOMATIC	PPM1D	PPM1D	17	17	58739621	58740728	Intron of PPM1D(+): 735bp before exon 6	Exon 6 of PPM1D(+)	GRCh37	INVERSION	PPM1D (NM_003620) rearrangement: c.1261-735_c.1633inv	IMPRECISE		MANUAL_OK	3to3	Antisense fusion	1107	NA	0	102	0	88
P-0013359-T01-IM5	SOMATIC	TRAF2	FBXW5	9	9	139815013	139833316	Intron of TRAF2(+): 46bp after exon 8	IGR: 2Kb before FBXW5(-)	GRCh37	INVERSION	TRAF2 (NM_021138) rearrangement: c.960+46:TRAF2_chr9:g.139833316inv	PRECISE		MANUAL_OK	3to3	-	18303	NA	0	51	44	35
P-0007416-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870315	42875820	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 1-10): c.55+4057:TMPRSS2_c.-11:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3005505	NA	0	102	83	107
P-0012674-T01-IM5	SOMATIC	RPS6KA4	DOCK2	11	5	64135589	169409522	Intron of RPS6KA4(+): 15bp before exon 10	Intron of DOCK2(+): 550bp before exon 28	GRCh37	TRANSLOCATION	DOCK2 (NM_004946) - RPS6KA4 (NM_003942) rearrangement:t(5;11)(q35.1;q13.1)(chr5:g.169409522::chr11:g.64135589)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (DOCK2-RPS6KA4)	0	NA	0	61	0	61
P-0012674-T01-IM5	SOMATIC	HNF1B	HNF1B	17	17	36060998	36067756	Exon 7 of HNF1B(-)	Intron of HNF1B(-): 3Kb before exon 6	GRCh37	DUPLICATION	HNF1B (NM_000458) rearrangement: c.1207-2700_c.1524dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6758	NA	0	12	11	12
P-0013457-T01-IM5	SOMATIC	ANKFN1	BRIP1	17	17	54569323	59885763	IGR: 9Kb after ANKFN1(+)	Intron of BRIP1(-): 65bp after exon 7	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: chr17:g.54569323_c.918+65:BRIP1del	PRECISE		MANUAL_OK	3to5	-	5316440	NA	0	21	25	21
P-0013457-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870300	42864658	Exon 1 of ERG(-)	Intron of TMPRSS2(-): 2Kb after exon 3	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.5:ERG_c.349+1625:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ERG-TMPRSS2)	2994358	NA	0	6	10	6
P-0014623-T01-IM6	SOMATIC	CARM1	LDLR	19	19	11031817	11212985	Intron of CARM1(+): 14bp after exon 14	Intron of LDLR(+): 355bp before exon 3	GRCh37	DELETION	CARM1 (NM_199141) - LDLR (NM_000527) rearrangement: c.1615+14:CARM1_c.191-355:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CARM1-LDLR)	181168	NA	0	22	39	20
P-0013465-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874922	42869204	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 842bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+842:TMPRSS2_c.40-57378:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2994282	NA	0	21	35	11
P-0010978-T02-IM5	SOMATIC	ALK	EML4	2	2	29446414	42546901	Intron of ALK(-): 20bp before exon 20	Intron of EML4(+): 2Kb after exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused with ALK exons 20-29): c.2154+2237:EML4_c.3173-20:ALKinv			MANUAL_OK	3to3	Protein fusion: out of frame (EML4-ALK)	13100487	NA	NA	19	27	NA
P-0013930-T01-IM5	SOMATIC	ASMTL	MLL2	X	12	1571489	49449164	Intron of ASMTL(-): 152bp after exon 1	Promoter of MLL2(-): 57bp from tx start	GRCh37	TRANSLOCATION	MLL2 (NM_003482) rearrangement: t(12;X)(q13.12;p22.33)(chr12:g.49449164::chrX:g.1571489)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	51	21	49
P-0014684-T01-IM6	SOMATIC	TRIO	RAD50	5	5	14088337	131938961	IGR: 55Kb before TRIO(+)	Intron of RAD50(+): 31bp before exon 14	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: chr5:g.14088337_c.2208-31:RAD50del	PRECISE		MANUAL_OK	3to5	-	117850624	NA	0	8	4	7
P-0014790-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10290057	10292618	Intron of DNMT1(-): 806bp after exon 5	Intron of DNMT1(-): 99bp after exon 2	GRCh37	INVERSION	DNMT1 (NM_001379) Rearrangement : c.117+99_445+969inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2561	NA	0	15	19	14
P-0011161-T01-IM5	SOMATIC	NAB2	MGAT4C	12	12	57486534	87188994	Intron of NAB2(+): 166bp before exon 4	5-UTR of MGAT4C(-): 806Kb before coding start	GRCh37	DELETION	NAB2 (NM_005967) rearrangement: c.1092-166:NAB2_chr12:g.87188994del	PRECISE		MANUAL_OK	3to5	Antisense fusion	29702460	NA	0	46	53	44
P-0012605-T01-IM5	SOMATIC	MAPK3	CNTN5	16	11	30133179	97704145	Exon 2 of MAPK3(-)	IGR: 1Mb before CNTN5(+)	GRCh37	TRANSLOCATION	MAPK3 (NM_002746) Rearrangement : t(11,16)(p13.3,q11.21)(chr11:g.97704145::chr16:g.30133179)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	52	40
P-0014509-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206651668	206657642	Exon 9 of IKBKE(+)	Intron of IKBKE(+): 692bp before exon 14	GRCh37	DUPLICATION	IKBKE (NM_014002) rearrangement: c.978_c.1428-692dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5974	NA	0	10	25	10
P-0014509-T01-IM6	SOMATIC	BARD1	BARD1	2	2	215645321	215647929	Exon 4 of BARD1(-)	Intron of BARD1(-): 2Kb before exon 4	GRCh37	DELETION	BARD1 (NM_000465) rearrangement: c.365-1696_c.1277del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2608	NA	0	16	25	16
P-0014509-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39734194	39744951	Intron of TOP1(+): 4Kb after exon 13	Exon 17 of TOP1(+)	GRCh37	DUPLICATION	TOP1 (NM_003286) rearrangement: c.1308+4201_c.1741dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	10757	NA	0	14	24	14
P-0014509-T01-IM6	SOMATIC	LOC150197	SMARCB1	22	22	20196291	24167458	IGR: 231bp after LOC150197(+)	Exon 7 of SMARCB1(+)	GRCh37	INVERSION	SMARCB1 (NM_003073) rearrangement: chr22:g.20196291_c.842:SMARCB1inv	PRECISE		MANUAL_OK	5to5	-	3971167	NA	0	16	28	16
P-0008663-T03-IM5	SOMATIC	DIS3	FAM155A	13	13	73352470	107986256	Exon 3 of DIS3(-)	Intron of FAM155A(-): 123Kb before exon 2	GRCh37	DUPLICATION	DIS3 (NM_014953) - FAM155A (NM_001080396) Rearrangement : c.435:DIS3_c.916-123153:FAM155Adup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DIS3-FAM155A)	34633786	NA	0	39	46	36
P-0008663-T03-IM5	SOMATIC	PTCH1	GULP1	9	2	98215982	189388232	Intron of PTCH1(-): 80bp before exon 20	Intron of GULP1(+): 678bp after exon 5	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) - GULP1 (NM_016315) Rearrangement: t(2;9)(q32.1;q22.32)(chr2:g.189388232::chr9:g.98215982)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	17	8
P-0012985-T01-IM5	SOMATIC	KIT	KIT	4	4	55603197	55618064	Intron of KIT(+): 144bp before exon 20	IGR: 11Kb after KIT(+)	GRCh37	DUPLICATION	KIT (NM_000222) rearrangement: c.2697-144_chr4:g.55618064dup	PRECISE		MANUAL_OK	5to3	-	14867	NA	0	10	15	10
P-0011405-T01-IM5	SOMATIC	DNMT3A	DNMT3A	2	2	25464487	25473789	Exon 17 of DNMT3A(-)	Intron of DNMT3A(-): 1Kb before exon 2	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c.640-2668_c.2026del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	9302	NA	0	79	98	79
P-0011589-T01-IM5	SOMATIC	SPEN	SPEN	1	1	16256515	16258647	Exon 11 of SPEN(+)	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.3780_c.5912del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2132	NA	0	101	77	96
P-0011039-T01-IM5	SOMATIC	CHEK2	KIAA1984	22	9	29092840	139692272	Intron of CHEK2(-): 49bp after exon 10	Intron of KIAA1984(+): 1Kb before exon 2	GRCh37	TRANSLOCATION	CHEK2 (NM_007194) - KIAA1984 (NM_001039374) rearrangement : t(9;22)(q34.3;q12.1)(chr9:g.139692272::chr22:g.29092840)	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (CHEK2-KIAA1984)	0	NA	0	80	45	78
P-0010247-T01-IM5	SOMATIC	FANCA	CDCA8	16	1	89828353	38170600	Intron of FANCA(-): 4bp after exon 29	Intron of CDCA8(+): 513bp before exon 9	GRCh37	TRANSLOCATION	FANCA (NM_000135) - CDCA8 (NM_018101) rearrangement: t(1;16)(p34.3;q24.3)(chr1:g.38170600::chr16:g.89828353)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FANCA-CDCA8)	0	NA	0	9	12	9
P-0014757-T01-IM6	SOMATIC	CKM	ERCC2	19	19	45814599	45873754	Intron of CKM(-): 408bp after exon 5	Intron of ERCC2(-): 40bp after exon 1	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: chr19:g.45814599_c.5+40inv	PRECISE		MANUAL_OK	3to3	-	59155	NA	0	9	15	8
P-0013309-T01-IM5	SOMATIC	NF1	NF1	17	17	29486088	29488166	Exon 3 of NF1(+)	Intron of NF1(+): 2Kb before exon 4	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.265_c.289-2038dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	2078	NA	0	19	28	19
P-0011455-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162394398	162449996	Exon 6 of PARK2(-)	Intron of PARK2(-): 25Kb after exon 5	GRCh37	DELETION	PARK2 (NM_004562) Rearrangement : c.618+25127_c.670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	55598	NA	0	28	38	28
P-0009908-T02-IM6	SOMATIC	APOL3	NTRK2	22	9	36567977	87479148	IGR: 6Kb after APOL3(-)	Intron of NTRK2(+): 3Kb before exon 16	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) rearrangement: t(9;22)(q21.33;q12.3)(chr9:g.87479148::chr22:g.36567977)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	47	31	47
P-0014496-T01-IM6	SOMATIC	BCL11B	AKT1	14	14	99512393	105238749	IGR: 123Kb before BCL11B(-)	Exon 12 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: chr14:g.99512393_c.1213:AKT1del	PRECISE		MANUAL_OK	3to5	-	5726356	NA	0	9	22	9
P-0015075-T01-IM6	SOMATIC	FBXO31	FANCA	16	16	87390021	89838177	Intron of FBXO31(-): 4Kb after exon 2	Exon 23 of FANCA(-)	GRCh37	INVERSION	FANCA (NM_000135) - FBXO31 (NM_024735) rearrangement: c.2060:FANCA_c.412+3880:FBXO31inv	PRECISE		MANUAL_OK	3to3	-	2448156	NA	0	12	18	12
P-0012507-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868024	42872292	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2176:TMPRSS2_c.18+2263:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3004268	NA	0	42	48	41
P-0012984-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41253398	41266576	5-UTR of CTNNB1(+): 12Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-12114_c.373del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	13178	NA	0	19	25	19
P-0012026-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72802720	72984734	IGR: 14Kb before ZFHX3(-)	Exon 3 of ZFHX3(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement : chr16:g.72802720_c.2850inv	PRECISE		MANUAL_OK	5to5	-	182014	NA	0	50	109	49
P-0014142-T01-IM5	SOMATIC	VANGL1	NOTCH2	1	1	116225861	120480483	Intron of VANGL1(+): 704bp before exon 6	Exon 20 of NOTCH2(-)	GRCh37	INVERSION	VANGL1 (NM_138959) - NOTCH2 (NM_024408) rearrangement: c.947-704:VANGL1_c.3334:NOTCH2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (VANGL1-NOTCH2)	4254622	NA	0	8	22	8
P-0008139-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39850842	42867120	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 615bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame to ERG exons 2-10): c.127-615:TMPRSS2_c.18+19445:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3016278	NA	0	90	68	86
P-0011285-T01-IM5	SOMATIC	RB1	RB1	13	13	48922038	48924069	Intron of RB1(+): 39bp after exon 5	Intron of RB1(+): 910bp after exon 6	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.539+39_c.607+910del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	2031	NA	0	12	13	11
P-0010041-T01-IM5	SOMATIC	ALK	EML4	2	2	29447942	42501013	Intron of ALK(-): 385bp after exon 19	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fuses with ALK exons 20-29) : c.701-6977:EML4_c.3172+385:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13053071	NA	0	69	83	68
P-0015059-T01-IM6	SOMATIC	NCOR1	RNASE12	17	14	15976930	21071817	Intron of NCOR1(-): 47bp before exon 28	IGR: 14Kb before RNASE12(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(14;17)(q11.2;p12)(chr14:g.21071817::chr17:g.15976930)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	15	14
P-0015059-T01-IM6	SOMATIC	STAT5B	STAT5B	17	17	40362151	40365340	Intron of STAT5B(-): 38bp after exon 15	Intron of STAT5B(-): 1Kb before exon 13	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement: c.1474-1132_c.1906+38inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	3189	NA	0	6	7	6
P-0014952-T01-IM6	SOMATIC	SDHB	ARHGEF10L	1	1	17371455	18019595	Intron of SDHB(-): 72bp before exon 2	Intron of ARHGEF10L(+): 2Kb before exon 28	GRCh37	DELETION	SDHB (NM_003000) rearrangement: c.73-72:SDHB_chr1:g.18019595del	PRECISE		MANUAL_OK	3to5	-	648140	NA	0	10	14	10
P-0013891-T01-IM5	SOMATIC	CNOT6	FLT4	5	5	179971815	180053174	Intron of CNOT6(+): 5Kb before exon 3	Exon 9 of FLT4(-)	GRCh37	INVERSION	FLT4 (NM_182925) - CNOT6 (NM_01545) rearrangement: c.1195:FLT4_c.113-5116:CNOT6inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (FLT4-CNOT6)	81359	NA	0	11	15	11
P-0011242-T01-IM5	SOMATIC	CDH15	ANKRD11	16	16	89266867	89346782	IGR: 5Kb after CDH15(+)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.6168:ANKRD11_chr16:g.89266867del	PRECISE		MANUAL_OK	3to5	-	79915	NA	0	11	12	11
P-0012630-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39951997	42871597	5-UTR of ERG(-): 4Kb before coding start	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 3-11) : c.56-1481:TMPRSS2_c.-47-4326:ERG_del	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2919600	NA	0	37	54	6
P-0012630-T01-IM5	SOMATIC	PIK3R1	KCTD16	5	5	67591142	143970832	Exon 7 of PIK3R1(+)	IGR: 420Kb before KCTD16(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) Rearrangement : c.1735:PIK3R1_chr5:g.143970832inv	PRECISE		MANUAL_OK	3to3	-	76379690	NA	0	25	45	25
P-0000441-T02-IM5	SOMATIC	FOXL2	FOXL2	3	3	138662997	138665388	IGR: 70bp before FOXL2(-)	Exon 1 of FOXL2(-)	GRCh37	DELETION	FOXL2 (NM_023067) rearrangement: c.177_c.*1437del	PRECISE		MANUAL_OK	3to5	-	2391	NA	0	11	19	11
P-0012976-T01-IM5	SOMATIC	C17orf51	ATR	17	3	21429234	142297572	IGR: 2Kb before C17orf51(-)	5-UTR of ATR(-): 26bp before coding start	GRCh37	TRANSLOCATION	ATR (NM_00118) rearrangement: t(3;17)(q23;p11.2)(chr3:g.142297572::chr17:g.21429234)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	18	30
P-0012976-T01-IM5	SOMATIC	PDGFRB	SH3PXD2B	5	5	149510161	171857484	Exon 9 of PDGFRB(-)	Intron of SH3PXD2B(-): 8Kb before exon 2	GRCh37	DELETION	SH3PXD2B (NM_001017995) - PDGFRB (NM_002609) rearrangement: c.76-7984:SH3PXD2B_c.1308:PDGFRBdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SH3PXD2B-PDGFRB)	22347323	NA	0	7	13	7
P-0014313-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15360020	15380111	Intron of BRD4(-): 4Kb before exon 12	Intron of BRD4(-): 258bp before exon 3	GRCh37	DUPLICATION	BRD4 (NM_058243) rearrangement: c.286-258_c.2159-4447Gdup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons: out of frame	20091	NA	0	32	36	31
P-0014313-T01-IM6	SOMATIC	TET2	TET2	4	4	106155213	106185151	Exon 3 of TET2(+)	Intron of TET2(+): 2Kb after exon 8	GRCh37	DUPLICATION	TET2 (NM_001127208) rearrangement: c.114_c.4044+2146dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	29938	NA	0	12	17	12
P-0013866-T01-IM5	SOMATIC	TGFBR1	TGFBR1	9	9	101867536	101869667	Exon 1 of TGFBR1(+)	Intron of TGFBR1(+): 2Kb after exon 1	GRCh37	DELETION	TGFBR1 (NM_004612) Rearrangement : c.49_97+2083del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2131	NA	0	9	29	9
P-0013049-T01-IM5	SOMATIC	RPS6KA4	SYPL1	11	7	64138133	105729402	Exon 16 of RPS6KA4(+)	IGR: 2Kb before SYPL1(-)	GRCh37	TRANSLOCATION	RPS6KA4 (NM_003942) rearrangement: t(7;11)(q22.3;q13.1)(chr7:g.105729402::chr11:g.64138133)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	12	10
P-0009828-T02-IM5	SOMATIC	SMARCB1	SMARCB1	22	22	24167539	24171143	Exon 7 of SMARCB1(+)	Intron of SMARCB1(+): 4Kb after exon 7	GRCh37	INVERSION	SMARCB1 (NM_003073) rearrangement: c.923_c.986+3541inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	3604	NA	0	28	37	27
P-0011456-T01-IM5	SOMATIC	RB1	PTPRG	13	3	49038089	62225879	Intron of RB1(+): 118bp after exon 21	Intron of PTPRG(+): 4Kb before exon 15	GRCh37	TRANSLOCATION	RB1 (NM_000321) -PTPRG (NM_002841) Rearrangement : t(3,13)(p14.2,q14.2)(chr3:g.62225879::chr13:g.49038089 )	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	27	18	23
P-0014462-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10250291	10259419	Intron of DNMT1(-): 61bp after exon 34	Intron of DNMT1(-): 141bp after exon 27	GRCh37	INVERSION	DNMT1 (NM_001379) Rearrangement : c.2672+141_c.3900+61inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	9128	NA	0	34	39	29
P-0014462-T01-IM6	SOMATIC	INSR	TACC1	19	8	7143094	38571591	Exon 12 of INSR(-)	IGR: 14Kb before TACC1(+)	GRCh37	TRANSLOCATION	INSR(NM_000208)Rearrangement : t(8;19)(p11.22.1;p13.2)(chr8:g.38571591::chr19:g38571591)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	34	25	22
P-0013261-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57487567	57493591	Intron of NAB2(+): 186bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exon 6 fused to STAT6 exon 15):  c.1468+186:NAB2_c.1703:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	6024	NA	0	38	45	37
P-0012738-T01-IM5	SOMATIC	BCOR	BCOR	X	X	39933695	39934972	Exon 4 of BCOR(-)	Intron of BCOR(-): 539bp before exon 4	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.166-539_c.904del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1277	NA	0	20	60	20
P-0014624-T01-IM6	SOMATIC	CALR	RAD23A	19	19	13051812	13058313	Intron of CALR(+): 111bp after exon 7	Intron of RAD23A(+): 349bp before exon 2	GRCh37	DELETION	CALR (NM_004343)  - RAD23A (NM_005053) rearrangement: c.960+111:CALR_c.73-349:RAD23Adel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CALR-RAD23A)	6501	NA	0	6	10	5
P-0014624-T01-IM6	SOMATIC	LCP2	EPAS1	5	2	169707068	46588195	Intron of LCP2(-): 4Kb before exon 4	Exon 6 of EPAS1(+)	GRCh37	TRANSLOCATION	LCP2 (NM_005565) - EPAS1(NM_001430) rearrangement: t(2;5)(p21;q35.1)(chr2:g.46588195::chr5:g.169707068)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (LCP2-EPAS1)	0	NA	0	11	8	11
P-0012107-T01-IM5	SOMATIC	EP300	EP300	22	22	41553282	41554497	Exon 18 of EP300(+)	Exon 19 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) Rearrangement : c.3371_c.3583del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1215	NA	0	20	0	19
P-0012107-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157090092	157100165	IGR: 9Kb before ARID1B(+)	Exon 1 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) Rearrangement : chr6:g.157090092_c.928:ARID1Bdel	PRECISE		MANUAL_OK	3to5	-	10073	NA	0	22	44	22
P-0010796-T01-IM5	SOMATIC	MGA	MGA	15	15	42046870	42057226	Intron of MGA(+): 105bp after exon 17	Exon 22 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement : c.7139+105_7887del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	10356	NA	0	102	96	112
P-0010796-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39838364	42871526	Intron of ERG(-): 21Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-1410:TMPRSS2_c.19-20820:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3033162	NA	0	101	108	126
P-0011334-T02-IM5	SOMATIC	MDM4	LRRN2	1	1	204518614	204565517	Exon 11 of MDM4(+)	IGR: 21Kb before LRRN2(-)	GRCh37	INVERSION	MDM4 (NM_002393) rearrangement: c.1277_chr1:g.204565517inv	PRECISE		MANUAL_OK	5to5	-	46903	NA	0	34	34	32
P-0012273-T01-IM5	SOMATIC	ANKRD11	SLC46A3	16	13	89349155	29376791	Exon 9 of ANKRD11(-)	IGR: 103Kb before SLC46A3(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(13;16)(q12.3;q24.3)(chr13:g.29376791::chr16:g.89349155 )	PRECISE		MANUAL_OK	5to5	-	0	NA	0	102	152	141
P-0012273-T01-IM5	SOMATIC	ROS1	SLC6A17	6	1	117650041	110685599	Intron of ROS1(-): 451bp after exon 32	IGR: 8Kb before SLC6A17(+)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(1;6)(p13.3;q22.1)(chr1:g.110685599::chr6:g.117650041)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0010238-T01-IM5	SOMATIC	APC	APC	5	5	112174447	112176171	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.3156_4880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1724	NA	0	99	125	99
P-0015024-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1730528	1808210	Intron of TACC3(+): 14bp after exon 4	Intron of FGFR3(+): 63bp before exon 16	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exon 16 fused to TACC3 exon 5) : c.2031-63:FGFR3_c.1385+14:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	77682	NA	0	98	95	98
P-0012516-T01-IM5	SOMATIC	SETD2	SETD2	3	3	47157419	47165219	Intron of SETD2(-): 694bp after exon 4	Exon 3 of SETD2(-)	GRCh37	DUPLICATION	SETD2 (NM_014159) rearrangement: c.907_c.4586+694dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	7800	NA	0	14	16	14
P-0012993-T01-IM5	SOMATIC	MTMR3	ERBB3	22	12	30290490	56487886	5-UTR of MTMR3(+): 77Kb before coding start	Exon 14 of ERBB3(+)	GRCh37	TRANSLOCATION	MTMR3 (NM_021090) - ERBB3 (NM_001982) Rearrangement :  t(12;22)(q13.3;q12.2)(chr12:g.56487886::chr22:g.30290490)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MTMR3-ERBB3)	0	NA	0	23	11	22
P-0010761-T01-IM5	SOMATIC	PHC1	FGFR2	12	10	9059183	123243116	IGR: 8Kb before PHC1(+)	Intron of FGFR2(-): 96bp after exon 16	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;12)(q26.13;p13.31)(chr10:g.123243116::chr12:g.9059183 )	PRECISE		MANUAL_OK	5to5	-	0	NA	0	30	25	30
P-0005884-T02-IM5	SOMATIC	MAST3	PIK3R2	19	19	18201958	18272942	IGR: 7Kb before MAST3(+)	Intron of PIK3R2(+): 70bp before exon 8	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement : c.902-70:PIK3R2_chr19:g.18201958del	PRECISE		MANUAL_OK	3to5	-	70984	NA	0	69	67	68
P-0012622-T01-IM5	SOMATIC	FOXP1	FOXP1	3	3	71015011	71114495	Intron of FOXP1(-): 30bp after exon 20	Intron of FOXP1(-): 12Kb before exon 8	GRCh37	DUPLICATION	FOXP1 (NM_001244814)  Rearrangement : c.283-11571_c.1889+30dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons: out of frame	99484	NA	0	9	25	9
P-0006458-T01-IM5	SOMATIC	IDH2	SEMA4B	15	15	90631503	90757389	Intron of IDH2(-): 88bp after exon 5	Intron of SEMA4B(+): 3Kb before exon 3	GRCh37	INVERSION	IDH2 (NM_002168) - SEMA4B (NM_198925) fusion: c.678+88:IDH2_c.158-3282:SEMA4Binv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (IDH2-SEMA4B)	125886	NA	0	14	22	14
P-0009024-T01-IM5	SOMATIC	MKRN1	BRAF	7	7	140156850	140493485	Intron of MKRN1(-): 184bp before exon 5	Intron of BRAF(-): 623bp after exon 8	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) rearrangement: c.772-184G:MKRN1_c.1140+623:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (MKRN1-BRAF)	336635	NA	0	42	41	42
P-0006909-T01-IM5	SOMATIC	LATS1	PCMT1	6	6	150016368	150079494	Intron of LATS1(-): 11bp before exon 3	Intron of PCMT1(+): 8Kb after exon 1	GRCh37	DELETION	LATS1 (NM_004690) - PCMT1 (NM_001252049) rearrangement : c.349-11:LATS1_c.229+8402:PCMT1del	PRECISE		MANUAL_OK	3to5	-	63126	NA	0	9	31	5
P-0009855-T01-IM5	SOMATIC	GON4L	NTRK1	1	1	155735123	156843711	Exon 21 of GON4L(-)	Exon 9 of NTRK1(+)	GRCh37	INVERSION	GON4L (NM_001037533) - NTRK1 (NM_002529) rearrangement : c.4141:GON4L_c.1137:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (GON4L-NTRK1)	1108588	NA	0	102	228	245
P-0005614-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29684957	128667277	Intron of EWSR1(+): 182bp after exon 7	Intron of FLI1(+): 8Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(11;22)(11q24.3;22q12.2)(chr11:g.128667277::chr22:g.29684957)	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (FLI1-EWSR1)	0	NA	0	13	7	11
P-0005614-T01-IM5	SOMATIC	STAG2	STAG2	X	X	123184079	123224321	Exon 10 of STAG2(+)	Intron of STAG2(+): 104bp before exon 30	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement : c.937_3278-104del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	40242	NA	0	48	44	47
P-0009917-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14228299	14628461	Intron of PRKACA(-): 15bp after exon 1	Intron of DNAJB1(-): 490bp after exon 1	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused in frame with PRKACA exons 2-10): c.211+490:DNAJB1_c.46+15:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	400162	NA	0	25	45	24
P-0000842-T02-IM5	SOMATIC	TIGD7	CREBBP	16	16	3350240	3843448	Exon 1 of TIGD7(-)	Exon 4 of CREBBP(-)	GRCh37	DUPLICATION	TIGD7 (NM_033208) - CREBBP (NM_004380) rearrangement: c.375:TIGD7_c.1155:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (TIGD7-CREBBP)	493208	NA	0	32	27	32
P-0008258-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55208523	55222263	Intron of EGFR(+): 1Kb before exon 2	Intron of EGFR(+): 418bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:c.89-1456_c.889+418del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	13740	NA	1	102	396	763
P-0008927-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55141420	55222161	Intron of EGFR(+): 54Kb after exon 1	Intron of EGFR(+): 316bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.88+54362_c.889+316del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	80741	NA	0	24	30	23
P-0007576-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831774	42869584	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 462bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2 to 10) :  c.126+462:TMPRSS2_c.19-14230:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3037810	NA	0	18	31	18
P-0001795-T02-IM5	SOMATIC	MIPOL1	FOXA1	14	14	37913584	38061122	Intron of MIPOL1(+): 21Kb after exon 12	Exon 2 of FOXA1(-)	GRCh37	DELETION	MIPOL1 (NM_138731) - FOXA1 (NM_004496) rearrangement: c.1031+21430:MIPOL1_c.867:FOXA1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	147538	NA	0	16	14	15
P-0006894-T01-IM5	SOMATIC	NCRNA00114	TMPRSS2	21	21	40054809	42873876	IGR: 56Kb before NCRNA00114(-)	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 1-11) : c.56-3760:TMPRSS2_chr21:g.40054809del	PRECISE		MANUAL_OK	3to5	-	2819067	NA	0	38	36	36
P-0005832-T01-IM5	SOMATIC	MUTYH	OSBPL9	1	1	45797001	52181050	Exon 14 of MUTYH(-)	Intron of OSBPL9(+): 1Kb after exon 4	GRCh37	INVERSION	MUTYH (:NM_001048172) - OSBPL9 (NM_148909) rearrangement event : c.1248:MUTYH_c.318+1299:OSBPL9inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (MUTYH-OSBPL9)	6384049	NA	0	5	10	5
P-0008429-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67585270	67591174	Intron of PIK3R1(+): 691bp after exon 1	Intron of PIK3R1(+): 22bp after exon 7	GRCh37	DUPLICATION	PIK3R1 (NM_181523) Rearrangement :  c.917-2817_1745+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons: out of frame	5904	NA	0	24	26	24
P-0008750-T01-IM5	SOMATIC	CALR	C19orf53	19	19	13051666	13888586	Exon 7 of CALR(+)	Intron of C19orf53(+): 280bp before exon 3	GRCh37	DELETION	CALR (NM_004343) -  C19orf53 (NM_014047) Rearrangement : c.925:CALR_c.154-280:C19orf53del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CALR-C19orf53)	836920	NA	0	45	61	45
P-0006268-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55240917	55269188	Intron of EGFR(+): 100bp after exon 17	Intron of EGFR(+): 140bp after exon 25	GRCh37	DUPLICATION	EGFR (NM_005228) Rearrangement : c.2061+100_3114+140dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	28271	NA	0	5	12	5
P-0005144-T01-IM5	SOMATIC	RPTOR	RPTOR	17	17	78816565	78858914	Intron of RPTOR(+): 4Kb before exon 11	Exon 17 of RPTOR(+)	GRCh37	DUPLICATION	RPTOR (NM_020761) rearrangement: c.1213-3708_c.1949dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	42349	NA	0	24	42	24
P-0005477-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55186194	55221914	Intron of EGFR(+): 24Kb before exon 2	Intron of EGFR(+): 69bp after exon 7	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement : c.89-23785_889+69dup (Note1)	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons: in frame	35720	NA	0	51	52	51
P-0005477-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55199901	55222824	Intron of EGFR(+): 10Kb before exon 2	Intron of EGFR(+): 699bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII deletion : c.89-10078_890-699del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	22923	NA	0	79	118	77
P-0005191-T01-IM5	SOMATIC	STK11	MIDN	19	19	1223177	1252151	Intron of STK11(+): 6bp after exon 8	Intron of MIDN(+): 251bp after exon 4	GRCh37	DELETION	STK11 (NM_000455) - MIDN (NM_177401) Rearrangement :  c.1108+6:STK11_c.384+251:MIDNdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (STK11-MIDN)	28974	NA	0	6	22	6
P-0007314-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55146731	55223442	Intron of EGFR(+): 60Kb after exon 1	Intron of EGFR(+): 81bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) viii intragenic deletion : c.88+59673_c.890-81del	IMPRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	76711	NA	0	10	0	10
P-0007314-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268944	55269817	Exon 25 of EGFR(+)	Intron of EGFR(+): 342bp after exon 26	GRCh37	DELETION	EGFR (NM_005228)  rearrangement : c.3010_3162+342del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	873	NA	0	21	25	21
P-0006480-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88498145	12029548	Intron of NTRK3(-): 14Kb before exon 14	Intron of ETV6(+): 7Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) reciprocal fusion (ETV6 exons 1-5 fused with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12029548::chr15:g.88498145)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	54	18	48
P-0005571-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876352	42877527	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon4) : c.55+2350:TMPRSS2_c.40-58808:ERG	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001175	NA	0	30	33	28
P-0005291-T01-IM5	SOMATIC	FGFR2	TFEC	10	7	123241729	115644112	Intron of FGFR2(-): 38bp before exon 17	5-UTR of TFEC(-): 20Kb before coding start	GRCh37	TRANSLOCATION	FGFR2 (NM_022970) - TFEC (NM_012252) Rearrangement: t(10;7)(q26.13;q31.2)(chr10:g.123241729;chr7:g.115644112)	PRECISE		MANUAL_OK	5to3	Transcript fusion (FGFR2-TFEC)	0	NA	0	94	49	25
P-0006856-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39830757	42872207	Intron of ERG(-): 13Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11) :  c.56-2091:TMPRSS2_c.40-13213:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3041450	NA	1	102	76	107
P-0006856-T01-IM5	SOMATIC	MAP3K1	FLJ37543	5	5	56178481	60995596	Exon 14 of MAP3K1(+)	Intron of FLJ37543(+): 4Kb before exon 4	GRCh37	DELETION	MAP3K1 (NM_005921) - C5orf64 (NM_173667) rearrangement: c.3454:MAP3K1_c.226-4097:C5orf64del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MAP3K1-FLJ37543)	4817115	NA	0	46	41	32
P-0009702-T01-IM5	SOMATIC	TP53	PSMD14	17	2	7578268	162135135	Exon 6 of TP53(-)	IGR: 30Kb before PSMD14(+)	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement :t(2;17)(q24.2;p13.1)(chr2:g.162135135::chr17:g.7578268)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	17	24	15
P-0009640-T01-IM5	SOMATIC	TMPRSS2	ETV1	21	7	42867532	14024122	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 2Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion (TMPRSS2 exons 1-2 fused with ETV1 exons 2-12): t(7;21)(p21.2;q22.3)(chr7:g.14024122::chr21:g.42867532)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-ETV1)	0	NA	0	14	0	14
P-0005325-T01-IM5	SOMATIC	NF1	CREB5	17	7	29679302	28860193	Exon 50 of NF1(+)	3-UTR of CREB5(+): 1Kb after coding stop	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - CREB5 (NM_182898) Rearrangement: t(17;7)(17q11.2;7p14.3)(chr17:29679302::7:28860193)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	25	36
P-0005135-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14220905	14628160	Intron of PRKACA(-): 3Kb before exon 2	Intron of DNAJB1(-): 302bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fuses with PRKACA exons 2-10): c.212-302:DNAJB1_c.47-2684:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	407255	NA	0	12	4	12
P-0008812-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39826686	42866528	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 23bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1-2 with ERG exons 2-10): c.127-23:TMPRSS2_c.19-9142:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3039842	NA	0	52	80	50
P-0006837-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39873621	42876181	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4 to 10) : c.55+3696:TMPRSS2:c.40-56077:ERG_del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3002560	NA	0	17	24	17
P-0006837-T01-IM5	SOMATIC	TMPRSS2	NLGN1	21	3	42872495	173935988	Intron of TMPRSS2(-): 2Kb before exon 2	Intron of NLGN1(+): 57Kb before exon 5	GRCh37	TRANSLOCATION	TMPRSS2(NM_001135099.1) - NLGN1(NM_014932.2) translocation :  t(3;21)(q26.31;q22.3)(c.647-57117:NLGN1::c.56-2379:TMPRSS2)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NLGN1-TMPRSS2)	0	NA	0	12	21	12
P-0005966-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739852	1808853	Intron of TACC3(+): 423bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1 to 17 with TACC3 exons 11 to 16) : c.2285:FGFR3_c.1941+423:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69001	NA	0	57	108	56
P-0004995-T01-IM5	SOMATIC	KIF5B	RET	10	10	32314330	43610660	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 476bp after exon 11	GRCh37	INVERSION	KIF5B(NM_004521) -RET (NM_020975)  Fusion ( KIF5B exon 15 fused to RET exon 12) : c.1726-2366:KIF5B_c.2136+476:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11296330	NA	0	36	38	32
P-0004795-T01-IM5	SOMATIC	BRAF	CUL1	7	7	140493811	148463226	Intron of BRAF(-): 297bp after exon 8	Intron of CUL1(+): 427bp before exon 8	GRCh37	INVERSION	CUL1(NM_003592) - BRAF (NM_004333) Rearrangement :c.790-427:CUL1_c.1140+297:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (CUL1-BRAF)	7969415	NA	0	15	20	15
P-0006639-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89716515	89717828	Intron of PTEN(+): 1Kb before exon 7	Intron of PTEN(+): 52bp after exon 7	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement : c.635-1095_801+52dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon: out of frame	1313	NA	0	5	10	4
P-0009432-T01-IM5	SOMATIC	DOT1L	ODZ4	19	11	2208867	79148762	Intron of DOT1L(+): 67bp before exon 12	5-UTR of ODZ4(-): 368Kb before coding start	GRCh37	TRANSLOCATION	TENM4 (NM_001098816) - DOT1L (NM_032482) rearrangement : t(11;19)(q14.1;p13.3)(chr11:g.79148762::chr19:g.2208867)	PRECISE		MANUAL_OK	5to5	Transcript fusion (ODZ4-DOT1L)	0	NA	0	29	63	29
P-0009456-T01-IM5	SOMATIC	MTAP	CDKN2A	9	9	21867755	21974537	IGR: 2Kb after MTAP(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) Rearrangement : c.317-3330_chr9:g.21867755del CDKN2Ap16INK4A (NM_000077): Rearrangement : c.150+140_chr9:g.21867755del	PRECISE		MANUAL_OK	3to5	-	106782	NA	0	12	29	12
P-0005761-T01-IM5	SOMATIC	COX7C	APC	5	5	85990826	112090681	IGR: 77Kb before COX7C(+)	Exon 2 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement : chr5:g.85990826_c.94:APCdel	PRECISE		MANUAL_OK	3to5	-	26099855	NA	0	13	17	12
P-0005761-T01-IM5	SOMATIC	NPM1	NPM1	5	5	170819688	170827039	Intron of NPM1(+): 26bp before exon 5	Intron of NPM1(+): 118bp before exon 7	GRCh37	DUPLICATION	NPM1 (NM_002520) rearrangement : c.353-26_525-118dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: out of frame	7351	NA	0	21	29	17
P-0005761-T01-IM5	SOMATIC	FUBP1	FUBP1	1	1	78432186	78434731	Intron of FUBP1(-): 192bp after exon 7	Intron of FUBP1(-): 844bp before exon 3	GRCh37	INVERSION	FUBP1 (NM_003902) rearrangement : c.212-844_473+192inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2545	NA	0	9	17	8
P-0008187-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32950144	32954013	Intron of BRCA2(+): 663bp before exon 21	Exon 23 of BRCA2(+)	GRCh37	DUPLICATION	BRCA2 (NM_000059) Rearrangement :  c.8633-663_9080dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3869	NA	0	45	46	45
P-0007622-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44824767	44919922	Intron of KDM6A(+): 4Kb after exon 3	Intron of KDM6A(+): 521bp after exon 13	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.334+4130_1329+521del	PRECISE		MANUAL_OK	3to5	Deletion of 10 exons: out of frame	95155	NA	0	36	41	36
P-0009239-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187510014	188073170	Exon 27 of FAT1(-)	IGR: 428Kb after FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: chr4:g.88073170_c.13499del	PRECISE		MANUAL_OK	3to5	-	563156	NA	0	27	21	27
P-0009556-T01-IM5	SOMATIC	RAB35	SPPL3	12	12	120536480	121212538	Intron of RAB35(-): 135bp after exon 5	Intron of SPPL3(-): 6Kb before exon 7	GRCh37	DUPLICATION	RAB35 (NM_006861) - SPPL3(NM_139015) Rearrangement :  c.477+135:RAB35_c.503-5676:SPPL3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (RAB35-SPPL3)	676058	NA	0	5	10	4
P-0121532-T01-IM5	SOMATIC	RPTOR	RPTOR	17	17	78588390	78865536	Intron of RPTOR(+): 11Kb before exon 2	Exon 18 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.163-11101_c.2000del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	277146	NA	0	12	14	12
P-0006172-T01-IM5	SOMATIC	P2RY8	NTRK1	X	1	1598513	156838012	5-UTR of P2RY8(-): 13Kb before coding start	Exon 6 of NTRK1(+)	GRCh37	TRANSLOCATION	P2RY8(NM_178129) - NTRK1 (NM_002529) rearrangement: t(X;1)(chrX:g.1598513::chr1:g.156838012)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NTRK1-P2RY8)	0	NA	0	14	9	13
P-0006091-T01-IM5	SOMATIC	NOTCH3	BRD4	19	19	15285027	15392638	Exon 25 of NOTCH3(-)	Promoter of BRD4(-): 1Kb from tx start	GRCh37	DELETION	BRD4 (NM_058243) - NOTCH3 (NM_000435 )  Rearrangement :  c.-1598:BRD4_c.4588:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (BRD4-NOTCH3)	107611	NA	0	102	202	336
P-0006091-T01-IM5	SOMATIC	XPO1	XPO1	2	2	61717949	61721344	Intron of XPO1(-): 38bp before exon 17	Intron of XPO1(-): 118bp before exon 12	GRCh37	DELETION	XPO1 (NM_003400) Rearrangement :  c.1888-38_1048-118del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons: in frame	3395	NA	0	66	55	64
P-0005352-T01-IM5	SOMATIC	DNAH1	PBRM1	3	3	52431009	52685752	Exon 73 of DNAH1(+)	Intron of PBRM1(-): 6bp after exon 7	GRCh37	INVERSION	PBRM1 (NM_018313) - DNAH1 (NM_015512) rearrangement: c.714:PBRM1_c.11736:DNAH1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (PBRM1-DNAH1)	254743	NA	0	84	74	79
P-0009946-T01-IM5	SOMATIC	ETV6	LOH12CR1	12	12	12034181	12610607	Intron of ETV6(+): 3Kb before exon 6	Intron of LOH12CR1(+): 8Kb before exon 4	GRCh37	DUPLICATION	LOH12CR1 (NM_058169) - ETV6 (NM_001987) rearrangement: c.361-7873:LOH12CR1_c.1010-3198:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (LOH12CR1-ETV6)	576426	NA	0	17	26	13
P-0006300-T01-IM5	SOMATIC	BRCA1	BRCA1	17	17	41197796	41201512	Exon 22 of BRCA1(-)	Intron of BRCA1(-): 301bp before exon 20	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement : c.5491_c.5333-301del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3716	NA	0	16	30	16
P-0009711-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55157971	55222614	Intron of EGFR(+): 52Kb before exon 2	Intron of EGFR(+): 769bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-52008_c.889+769del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	64643	NA	0	13	13	13
P-0009602-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67590897	67591960	Intron of PIK3R1(+): 79bp before exon 7	Intron of PIK3R1(+): 39bp before exon 9	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1569-79_c.1815-39inv	IMPRECISE		MANUAL_OK	5to5	-	1063	NA	0	42	0	40
P-0009339-T01-IM5	SOMATIC	ALK	EML4	2	2	29447889	42501120	Intron of ALK(-): 438bp after exon 19	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.668-6870:EML4_c.3172+438:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13053231	NA	0	102	142	242
P-0008920-T01-IM5	SOMATIC	ZNF207	BRAF	17	7	30687533	140485847	Intron of ZNF207(+): 84bp before exon 4	Intron of BRAF(-): 2Kb after exon 9	GRCh37	TRANSLOCATION	ZNF207 (NM_001098507) - BRAF (NM_004333) rearrangement: t(7;17)(q34;q11.2)(chr7:g.140485847::chr17:g.30687533)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ZNF207-BRAF)	0	NA	0	97	23	96
P-0006756-T01-IM5	SOMATIC	MLL	MLL	11	11	118366417	118368453	Exon 19 of MLL(+)	Intron of MLL(+): 198bp before exon 21	GRCh37	DELETION	MLL (NM_001197104) rearrangement : c.5366_5665-198del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2036	NA	0	7	25	7
P-0006756-T01-IM5	SOMATIC	NOTCH3	AKAP8	19	19	15285088	15414856	Exon 25 of NOTCH3(-)	IGR: 49Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement : c.4527_chr19:g.15414856del	PRECISE		MANUAL_OK	3to5	-	129768	NA	0	94	107	90
P-0005305-T01-IM5	SOMATIC	ALK	EML4	2	2	29447764	42502233	Intron of ALK(-): 563bp after exon 19	Intron of EML4(+): 6Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK  exons 20-29): c.668-5757:EML4_c.3172+563:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13054469	NA	0	39	66	38
P-0005305-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21971052	22061562	Exon 2 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 60Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.349_chr9:g.22061562del    CDKN2Ap16INK4A (NM_000077) rearrangement: c.306_chr9:g.22061562del	PRECISE		MANUAL_OK	3to5	-	90510	NA	0	38	54	37
P-0007989-T01-IM5	SOMATIC	EGFR	SEPT14	7	7	55268333	55839740	Intron of EGFR(+): 227bp after exon 24	IGR: 21Kb before SEPT14(-)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+227:EGFR_chr7:g.55839740del	PRECISE		MANUAL_OK	3to5	-	571407	NA	0	49	52	24
P-0005011-T01-IM5	SOMATIC	GPS2	TP53	17	17	7216983	7579508	Exon 7 of GPS2(-)	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) - GPS2 (NM_004489) rearrangement: c.179:TP53_c.538:GPS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (TP53-GPS2)	362525	NA	0	31	35	29
P-0009546-T01-IM5	SOMATIC	PRDM1	PRDM1	6	6	106554881	106556577	Exon 7 of PRDM1(+)	3-UTR of PRDM1(+): 1Kb after coding stop	GRCh37	DELETION	PRDM1 (NM_001198 ) Rearrangement :  c.1998_*1216del	PRECISE		MANUAL_OK	3to5	-	1696	NA	0	17	32	17
P-0009260-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21968268	22078146	Intron of CDKN2A(-): 27bp before exon 3	5-UTR of CDKN2BAS(+): 43Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement:  c.458-27_chr9:g.22078146del	PRECISE		MANUAL_OK	3to5	-	109878	NA	0	8	12	8
P-0008523-T01-IM5	SOMATIC	EWSR1	RIC3	22	11	29684096	8144492	Intron of EWSR1(+): 499bp before exon 7	Intron of RIC3(-): 4Kb after exon 5	GRCh37	TRANSLOCATION	RIC3 (NM_001206671) - EWSR1 (NM_013986)  Rearrangement : t(11;22)(11p15.4;22q12.2)(chr11:g.8144492::chr22:g.29684096)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (RIC3-EWSR1)	0	NA	0	27	34	27
P-0005459-T01-IM5	SOMATIC	DSCAM	TMPRSS2	21	21	41501891	42867909	Intron of DSCAM(-): 4Kb after exon 19	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - DSCAM (NM_001389) Rearrangement : c.127-1404:TMPRSS2 _c.3562+3890:DSCAMdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-DSCAM)	1366018	NA	0	68	80	68
P-0009709-T01-IM5	SOMATIC	DPP9	PTPRS	19	19	4683742	5223236	Intron of DPP9(-): 101bp before exon 19	Exon 18 of PTPRS(-)	GRCh37	DUPLICATION	DPP9 (NM_139159) PTPRS (NM_002850) rearrangement: c.2179-101:DPP9_c.2567:PTPRSdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DPP9-PTPRS)	539494	NA	0	12	18	12
P-0007855-T01-IM5	SOMATIC	INSR	INSR	19	19	7126629	7128634	Exon 16 of INSR(-)	Intron of INSR(-): 229bp after exon 15	GRCh37	INVERSION	INSR (NM_000208) rearrangement : c.2945+229_2979inv	PRECISE		MANUAL_OK	3to3	-	2005	NA	0	11	14	10
P-0009565-T02-IM5	SOMATIC	PIK3C2G	PDE3A	12	12	18691345	20682328	Intron of PIK3C2G(+): 99bp after exon 24	Intron of PDE3A(+): 27Kb before exon 2	GRCh37	INVERSION	PIK3C2G (NM_004570) - PDE3A (NM_000921) rearrangement: c.3357+99:PIK3C2G_c.961-27266:PDE3Ainv	PRECISE		MANUAL_OK	3to3	Antisense fusion	1990983	NA	0	7	7	5
P-0008452-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39902226	42872698	Intron of ERG(-): 45Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.56-2582:TMPRSS2_c.39+45360:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2970472	NA	0	44	57	42
P-0005957-T01-IM5	SOMATIC	NOTCH3	NOTCH3	19	19	15275832	15276856	Intron of NOTCH3(-): 347bp after exon 31	Exon 30 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) Rearrangement :  c.5409_5815+347del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1024	NA	0	28	37	26
P-0009703-T01-IM5	SOMATIC	CDH3	CDH1	16	16	68664883	68861965	IGR: 13Kb before CDH3(+)	Intron of CDH1(+): 112bp before exon 14	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement :   chr16:g.68664883_ c.2165-112:CDH1del	PRECISE		MANUAL_OK	3to5	-	197082	NA	0	10	14	10
P-0009249-T01-IM5	SOMATIC	TMCO5A	MGA	15	15	37922302	42042297	IGR: 305Kb before TMCO5A(+)	Exon 16 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.6492_chr15:g.37922302inv	PRECISE		MANUAL_OK	3to3	-	4119995	NA	0	24	39	24
P-0006846-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55203780	55223369	Intron of EGFR(+): 6Kb before exon 2	Intron of EGFR(+): 154bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :  c.89-6199_890-154del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	19589	NA	1	98	480	2284
P-0006225-T01-IM5	SOMATIC	SMARCD1	SMARCD1	12	12	50482479	50483869	Intron of SMARCD1(+): 59bp after exon 6	Intron of SMARCD1(+): 101bp after exon 7	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement: c.771+59_c.873+101del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	1390	NA	0	38	39	37
P-0007233-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32910615	32912368	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement : c.2123_3876del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1753	NA	0	12	30	12
P-0008663-T02-IM5	SOMATIC	DIS3	FAM155A	13	13	73352470	107986256	Exon 3 of DIS3(-)	Intron of FAM155A(-): 123Kb before exon 2	GRCh37	DUPLICATION	DIS3 (NM_014953) - FAM155A (NM_001080396) rearrangement: c.435:DIS3_c.916-123153:FAM155Adup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DIS3-FAM155A)	34633786	NA	1	39	79	38
P-0007071-T01-IM5	SOMATIC	EYA2	NCOA3	20	20	45528250	46255811	5-UTR of EYA2(+): 90Kb before coding start	Exon 6 of NCOA3(+)	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement :  c.-11+4624:EYA2_c.423:NCOA3inv	PRECISE		MANUAL_OK	5to5	-	727561	NA	0	12	37	11
P-0007917-T02-IM5	SOMATIC	CST7	FAM175A	20	4	24802754	84397854	IGR: 127Kb before CST7(+)	Intron of FAM175A(-): 22bp before exon 3	GRCh37	TRANSLOCATION	FAM175A (NM_139076) rearrangement : t(4;20)(q21.23;p11.21)(chr4:g.84397854::chr20:g.24802754)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	73	0	65
P-0004931-T02-IM5	SOMATIC	EWSR1	FLI1	22	11	29688357	128651438	Intron of EWSR1(+): 120bp before exon 10	Intron of FLI1(+): 415bp before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) reciprocal fusion (EWSR1 exons 1-10 with FLI1 exons 5-9) : t(22;11)(22q12.2;11q24.3)(chr22:g.29688357::chr11:g.128651438)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	27	17	27
P-0008657-T01-IM5	SOMATIC	FGFR2	KLRAQ1	10	2	123240684	48721864	Intron of FGFR2(-): 1Kb before exon 18	Intron of KLRAQ1(+): 954bp before exon 16	GRCh37	TRANSLOCATION	FGFR1 (NM_000141) - PPP1R21 (NM_152994)  Rearrangement  : t(2;10)(2p16.3;10q26.13)(chr2:g.48721864::chr10:g.123240684)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-KLRAQ1)	0	NA	0	16	25	11
P-0009840-T01-IM5	SOMATIC	SRC	SRC	20	20	36024956	36031208	Intron of SRC(+): 242bp after exon 8	Exon 13 of SRC(+)	GRCh37	DUPLICATION	SRC (NM_198291) rearrangement: c.703+242_c.1327dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6252	NA	0	13	29	13
P-0007966-T01-IM5	SOMATIC	MAP2K1	SMAD3	15	15	66679794	67250578	Intron of MAP2K1(+): 29bp after exon 1	IGR: 108Kb before SMAD3(+)	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement : c.80+29_chr15:g.67250578del	PRECISE		MANUAL_OK	3to5	-	570784	NA	0	5	10	5
P-0008856-T01-IM5	SOMATIC	CCL2	CD79B	17	17	32525586	62007420	IGR: 57Kb before CCL2(+)	Intron of CD79B(-): 14bp after exon 3	GRCh37	DELETION	CD79B (NM_001039933) rearrangement: chr17:g.32525586_c.433+14:CD79Bdel	PRECISE		MANUAL_OK	3to5	-	29481834	NA	0	64	61	62
P-0005578-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57486815	57500695	Intron of NAB2(+): 31bp before exon 5	Intron of STAT6(-): 81bp before exon 5	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) Fusion (NAB2 exon4 fused with STAT6 exon5) :  c.1144-31:NAB2_c.340-81:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	13880	NA	0	101	83	95
P-0009622-T01-IM5	SOMATIC	BAP1	PBRM1	3	3	52440375	52588482	Exon 9 of BAP1(-)	Intron of PBRM1(-): 258bp after exon 27	GRCh37	DELETION	PBRM1 (NM_018313) - BAP1 (NM_004656) rearrangement: c.4288+258:PBRM1_c.677:BAP1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (PBRM1-BAP1)	148107	NA	0	21	23	20
P-0001242-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860331	42867992	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exons 1 to 2 fused with ERG exons 2 to 10)  :  c.127-1487:TMPRSS2_c.18+9956:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3007661	NA	0	3	6	3
P-0005756-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39844130	42867719	Intron of ERG(-): 26Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10) : c.127-1214:TMPRSS2_c.18+26157:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3023589	NA	0	102	124	143
P-0004861-T01-IM5	SOMATIC	BBC3	C2orf63	19	2	47729876	55436488	Exon 2 of BBC3(-)	Intron of C2orf63(-): 52bp after exon 5	GRCh37	TRANSLOCATION	BBC3 (NM_001127240) - CLHC1 (NM_001135598) rearrangement: t(19;2)(q13;p16.1)(chr19:g.47729876::chr2:g.55436488)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	39	32	38
P-0000657-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55203130	55223202	Intron of EGFR(+): 7Kb before exon 2	Intron of EGFR(+): 321bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:  c.89-6849_890-321del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	20072	NA	0	102	140	288
P-0001747-T02-IM5	SOMATIC	WT1	WIT1	11	11	32410767	32469527	Intron of WT1(-): 42bp before exon 10	IGR: 8Kb after WIT1(+)	GRCh37	INVERSION	WT1 (NM_024426) rearrangement: c.1433-42:WT1_chr11:g.32469527inv	PRECISE		MANUAL_OK	3to3	-	58760	NA	0	85	42	42
P-0009052-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55182596	55222643	Intron of EGFR(+): 27Kb before exon 2	Intron of EGFR(+): 798bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :  c.89-27383_889+798del	IMPRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	40047	NA	0	102	0	502
P-0009872-T02-IM5	SOMATIC	ERBB2	ERBB2	17	17	37873950	37876550	Intron of ERBB2(+): 217bp after exon 15	Intron of ERBB2(+): 463bp after exon 16	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement : c.1898+217_1946+463del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2600	NA	0	44	49	18
P-0002707-T03-IM5	SOMATIC	ROS1	CD74	6	5	117646946	149783748	Intron of ROS1(-): 441bp after exon 33	Intron of CD74(-): 495bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944)  fusion (CD274 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.49783748::chr6:g.117646946 )	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	96	40	91
P-0009503-T01-IM5	SOMATIC	BRD4	RSL1D1	19	16	15376304	11933572	Exon 5 of BRD4(-)	Exon 8 of RSL1D1(-)	GRCh37	TRANSLOCATION	RSL1D1 (NM_015659) - BRD4 (NM_058243) rearrangement: t(16;19)(p13.13;p13.12)(chr16:g.11933572::chr19:g.15376304)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RSL1D1-BRD4)	0	NA	0	11	10	11
P-0009503-T01-IM5	SOMATIC	PPP2R1A	ZNF236	19	18	52719830	74482654	Exon 9 of PPP2R1A(+)	IGR: 53Kb before ZNF236(+)	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) rearrangement: t(18;19)(q23;q13.41)(chr18:g.74482654::chr19:g.52719830)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	21	26	21
P-0006808-T01-IM5	SOMATIC	NFKBIA	RPS29	14	14	35872430	49675988	Exon 3 of NFKBIA(-)	IGR: 368Kb before RPS29(-)	GRCh37	DELETION	NFKBIA(NM_020529) Rearrangement :  c.473_chr14:g.49675988del	PRECISE		MANUAL_OK	3to5	-	13803558	NA	0	102	80	94
P-0004704-T01-IM5	SOMATIC	PIK3R1	MUC1	5	1	67591974	155160349	Intron of PIK3R1(+): 25bp before exon 9	Intron of MUC1(-): 15bp before exon 5	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) - MUC (NM_001204287) rearrangement : t(1;5)(1q22;5q13.1)(chr1:g.155160349::chr5:g.67591974)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	30	0	28
P-0000690-T02-IM5	SOMATIC	PODNL1	BRD4	19	19	14061191	15374351	Intron of PODNL1(-): 3Kb after exon 1	Exon 7 of BRD4(-)	GRCh37	INVERSION	BRD4(NM_058243) - PODNL1(NM_001146254)  Rearangement: c.1221:BRD4_c.18+2740:PODNL1inv	PRECISE		MANUAL_OK	3to3	-	1313160	NA	0	42	41	40
P-0008711-T01-IM5	SOMATIC	FOXO1	FOXO1	13	13	41133651	41135289	3-UTR of FOXO1(-): 9bp after coding stop	Intron of FOXO1(-): 292bp before exon 2	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement: c.631-292_c.*9inv	PRECISE		MANUAL_OK	5to5	-	1638	NA	0	26	52	24
P-0009303-T01-IM5	SOMATIC	TP53	TP53	17	17	7577980	7579743	Intron of TP53(-): 197bp after exon 6	Intron of TP53(-): 22bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-22_c.672+197del.	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: out of frame	1763	NA	0	21	42	11
P-0007523-T01-IM5	SOMATIC	EIF4A2	BCL6	3	3	186503840	187458061	Exon 5 of EIF4A2(+)	5-UTR of BCL6(-): 7Kb before coding start	GRCh37	DELETION	EIF4A2(NM_001967) - BCL6 (NM_001706) rearrangement : c.517C:EIF4A2_c.-4233:BCL6del	PRECISE		MANUAL_OK	3to5	Antisense fusion	954221	NA	0	15	33	14
P-0008332-T01-IM5	SOMATIC	ALK	EML4	2	2	29446912	42523484	Intron of ALK(-): 518bp before exon 20	Intron of EML4(+): 828bp after exon 12	GRCh37	DUPLICATION	EML4 (NM_019063) - ALK (NM_004304) rearrangement :  c.1489+828:EML4_c.3173-518:ALKdup	PRECISE		MANUAL_OK	5to3	Antisense fusion	13076572	NA	0	85	91	82
P-0005083-T01-IM5	SOMATIC	TFE3	SFPQ	X	1	48895296	35645716	Intron of TFE3(-): 239bp after exon 5	IGR: 3Kb before SFPQ(-)	GRCh37	TRANSLOCATION	TFE3(NM_006521) Rearrangement :  t(X;1)(Xp11.23;1p34.3)(chrX:g.48895296::chr1:g.35645716)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	46	40	43
P-0007366-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39836918	42872445	Intron of ERG(-): 19Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 2 to 10) : c.56-2329:TMPRSS2_c.40-19374:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3035527	NA	0	7	16	7
P-0009619-T01-IM5	SOMATIC	SND1	BRAF	7	7	127717136	140482494	Intron of SND1(+): 2Kb after exon 17	Intron of BRAF(-): 327bp after exon 10	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) rearrangement: c.1968+2394:SND1_ c.1314+327:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	12765358	NA	0	37	52	35
P-0004747-T01-IM5	SOMATIC	ROS1	CD74	6	5	117649107	149782561	Intron of ROS1(-): 1Kb after exon 32	Intron of CD74(-): 123bp after exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6) (q32;q22.1) (chr5:g.149782561::chr6:g.117649107)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (CD74-ROS1)	0	NA	0	13	14	13
P-0008795-T01-IM5	SOMATIC	NDFIP2	ERCC5	13	13	80173550	103524596	IGR: 43Kb after NDFIP2(+)	Exon 13 of ERCC5(+)	GRCh37	INVERSION	ERCC5 (NM_000123) rearrangement : chr13:g.80173550_c.2727:ERCC5inv	PRECISE		MANUAL_OK	3to3	-	23351046	NA	0	24	37	22
P-0008795-T01-IM5	SOMATIC	MYO16	IRS2	13	13	109420518	110419460	Intron of MYO16(+): 17Kb before exon 5	Intron of IRS2(-): 11Kb before exon 2	GRCh37	INVERSION	MYO16 (NM_015011) - IRS2 (NM_003749) rearrangement : c.442-17465:MYO16_c.4013-10805:IRS2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (MYO16-IRS2)	998942	NA	0	27	25	26
P-0008795-T01-IM5	SOMATIC	FOXA1	CASZ1	14	1	38061338	10708606	Exon 2 of FOXA1(-)	Intron of CASZ1(-): 410bp before exon 16	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) - CASZ1 (NM_001079843) rearrangement : t(1;14)(p36.22;q21.2)(chr1:g.10708606::chr14:g.38061338)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	42	68	37
P-0008795-T01-IM5	SOMATIC	FOXA1	NRG1	14	8	38061417	32309025	Exon 2 of FOXA1(-)	Intron of NRG1(+): 144Kb before exon 2	GRCh37	TRANSLOCATION	NRG1 (NM_013962) - FOXA1 (NM_004496) rearrangement : t(8;14)(p12;q21.1)(chr8:g.32309025::chr14:g.38061417)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NRG1-FOXA1)	0	NA	0	67	47	55
P-0007515-T01-IM5	SOMATIC	NCOR1	SLFN12	17	17	16004671	33758169	Exon 20 of NCOR1(-)	5-UTR of SLFN12(-): 8Kb before coding start	GRCh37	INVERSION	NCOR1 (NM_006311)  -  SLFN12 (NM_018042) rearrangement : c.2583:NCOR1_c.-41+1038:SLFN12inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	17753498	NA	0	102	74	86
P-0002071-T02-IM5	SOMATIC	SND1	BRAF	7	7	127380060	140489292	Intron of SND1(+): 19Kb after exon 10	Intron of BRAF(-): 2Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-10 fused with BRAF exons 9-18) : c.1152+18606:SND1_c.1141-1908:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13109232	NA	0	31	42	30
P-0006830-T01-IM5	SOMATIC	EP300	LRRC20	22	10	41488964	72085428	5-UTR of EP300(+): 45bp before coding start	Intron of LRRC20(-): 2Kb before exon 4	GRCh37	TRANSLOCATION	LRRC20 (NM_207119) - EP300 (NM_001429) translocation : t(10;22)(q22.1;q13.2)(chr10:g.72085428::chr22:g.41488964)	PRECISE		MANUAL_OK	5to5	Transcript fusion (LRRC20-EP300)	0	NA	0	35	20	32
P-0005712-T01-IM5	SOMATIC	FH	FH	1	1	241665729	241672991	Intron of FH(-): 14bp after exon 8	Intron of FH(-): 906bp before exon 5	GRCh37	DUPLICATION	FH (NM_000143) rearrangement: c.556-906_c.1236+14dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons: in frame	7262	NA	0	72	67	70
P-0005712-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46246620	46258225	Exon 15 of ARID2(+)	Intron of ARID2(+): 3Kb after exon 16	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.4714_c.4922+3493dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	11605	NA	0	15	25	15
P-0006948-T01-IM5	SOMATIC	CARD11	CARD11	7	7	2946387	2952224	Exon 25 of CARD11(-)	Intron of CARD11(-): 294bp before exon 23	GRCh37	DUPLICATION	CARD11 (NM_032415) rearrangement: c.3020-294_c.3350dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5837	NA	0	47	53	46
P-0008680-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187525729	187613052	Intron of FAT1(-): 1bp before exon 18	Intron of FAT1(-): 15Kb after exon 2	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement : c.10351-1_265+14665inv	PRECISE		MANUAL_OK	3to3	-	87323	NA	0	9	12	9
P-0005177-T01-IM5	SOMATIC	TFE3	NONO	X	X	48895134	70517856	Intron of TFE3(-): 401bp after exon 5	Intron of NONO(+): 68bp after exon 8	GRCh37	INVERSION	NONO (NM_001145409) -TFE3 (NM_006521) fusion (NONO exons 1-8  with  TFE3 exons 6-10):  c.1131+68:NONO_ c.885+401:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NONO-TFE3)	21622722	NA	0	11	11	6
P-0008023-T01-IM5	SOMATIC	ZNF778	ANKRD11	16	16	89300582	89347614	IGR: 5Kb after ZNF778(+)	Exon 9 of ANKRD11(-)	GRCh37	DUPLICATION	ANKRD11 (NM_013275) rearrangement: c.5336:ANKRD11_chr16:g.89300582dup	PRECISE		MANUAL_OK	5to3	-	47032	NA	0	7	22	7
P-0004722-T01-IM5	SOMATIC	BCL2	BCL2	18	18	60971731	60985746	Intron of BCL2(-): 14Kb after exon 2	Exon 2 of BCL2(-)	GRCh37	INVERSION	BCL2(NM_000633)  Rearrangement : c.585+13584_154inv	PRECISE		MANUAL_OK	3to3	-	14015	NA	0	16	41	16
P-0006074-T01-IM5	SOMATIC	TOP1	SLC13A3	20	20	39745023	45193574	Exon 17 of TOP1(+)	Intron of SLC13A3(-): 1Kb after exon 11	GRCh37	DELETION	TOP1 (NM_003286) - SLC13A3 (NM_022829) rearrangement event : c.1813:TOP1_c.1494+1294: SLC13A3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	5448551	NA	0	40	81	37
P-0007518-T01-IM5	SOMATIC	SBNO2	STK11	19	19	1108469	1219265	Exon 32 of SBNO2(-)	Intron of STK11(+): 58bp before exon 3	GRCh37	INVERSION	SBNO2 (NM_014963) - STK11 (NM_000455)  Rearrangement  : c.3851:SBNO2_c.375-58:STK11inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (SBNO2-STK11)	110796	NA	0	18	49	18
P-0007518-T01-IM5	SOMATIC	STK11	STK11	19	19	1221227	1226791	Exon 6 of STK11(+)	3-UTR of STK11(+): 145bp after coding stop	GRCh37	INVERSION	STK11 (NM_000455) Rearrangement : c.*16+129_750inv	PRECISE		MANUAL_OK	3to3	-	5564	NA	0	58	113	58
P-0006071-T01-IM5	SOMATIC	SOCS1	SOCS1	16	16	11350036	11350841	5-UTR of SOCS1(-): 701bp before coding start	Promoter of SOCS1(-): 802bp from tx start	GRCh37	DELETION	SOCS1 (NM_003745) rearrangment : c.-956_-151del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript	805	NA	0	49	0	48
P-0006071-T01-IM5	SOMATIC	NCOA3	NCOA3	20	20	46265466	46272155	Exon 12 of NCOA3(+)	Intron of NCOA3(+): 1Kb after exon 17	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement : c.2336_3252+1027inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	6689	NA	0	102	125	198
P-0008384-T01-IM5	SOMATIC	MLL2	NEUROD4	12	12	49431155	55435213	Exon 34 of MLL2(-)	IGR: 21Kb before NEUROD4(+)	GRCh37	DELETION	MLL2 (NM_003482) rearrangement: c.9984:MLL2_chr12:55435213del	PRECISE		MANUAL_OK	3to5	-	6004058	NA	0	6	18	6
P-0008384-T01-IM5	SOMATIC	NAB2	CUX2	12	12	57486406	111555102	Intron of NAB2(+): 42bp after exon 3	Intron of CUX2(+): 83Kb after exon 1	GRCh37	DUPLICATION	CUX2 (NM_015267) - NAB2 (NM_005967) rearrangement: c.63+83058:CUX2_c.1091+42:NAB2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (CUX2-NAB2)	54068696	NA	0	12	29	12
P-0008166-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55196963	55222216	Intron of EGFR(+): 13Kb before exon 2	Intron of EGFR(+): 371bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-13016_c.889+371inv	PRECISE		MANUAL_OK	5to5	-	25253	NA	0	3	3	3
P-0007363-T01-IM5	SOMATIC	RECQL4	ARHGAP39	8	8	145736981	145759387	Intron of RECQL4(-): 43bp before exon 21	Intron of ARHGAP39(-): 126bp after exon 9	GRCh37	INVERSION	RECQL4 (NM_004260) - ARHGAP39(NM_025251) rearrangement : c.3503-43:RECQL4_c.2688+126:ARHGAP39inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	22406	NA	0	17	31	16
P-0006864-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162763179	162864351	Intron of PARK2(-): 79Kb before exon 3	Exon 2 of PARK2(-)	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.162_c.172-79382del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	101172	NA	0	6	9	6
P-0008334-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11165486	11169536	Intron of SMARCA4(+): 3Kb before exon 29	Exon 30 of SMARCA4(+)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement : c.4425-3445_4606inv	PRECISE		MANUAL_OK	5to5	-	4050	NA	0	11	22	11
P-0005174-T01-IM5	SOMATIC	JAK3	SLC5A2	19	16	17945650	31501596	Intron of JAK3(-): 11bp after exon 16	Intron of SLC5A2(+): 34bp before exon 14	GRCh37	TRANSLOCATION	JAK3 (NM_000215) - SLC5A2 (NM_003041) rearrangement: t(16;19)(p13.11;p11.2)(chr16:g.31501596::chr19:g.17945650)	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (JAK3-SLC5A2)	0	NA	0	11	23	11
P-0008664-T01-IM5	SOMATIC	MIR873	EGFL7	9	9	30093113	139564150	IGR: 1Mb before MIR873(-)	Exon 5 of EGFL7(+)	GRCh37	DELETION	EGFL7 (NM_201446) rearrangement: chr9:g.30093113_c.290:EGFL7del	PRECISE		MANUAL_OK	3to5	-	109471037	NA	0	10	19	10
P-0008932-T01-IM5	SOMATIC	NCOR1	CD82	17	11	15935918	44516827	Intron of NCOR1(-): 121bp before exon 46	IGR: 70Kb before CD82(+)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) Rearrangement : t(11;17)(11p11.2;17p12)(chr11:g.44516827::chr17:g.15935918 )	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	18	23
P-0000258-T02-IM5	SOMATIC	EWSR1	WT1	22	11	29683566	32416269	Intron of EWSR1(+): 443bp after exon 6	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-7 with WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416269::chr22:g.29683566)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	90	48	89
P-0009044-T01-IM5	SOMATIC	TP53	ANTXR2	17	4	7580615	80921091	5-UTR of TP53(-): 703bp before coding start	Intron of ANTXR2(-): 9Kb after exon 12	GRCh37	TRANSLOCATION	TP53 ( NM_000546) Rearrangement : t(4;17)(4q21.21;17p13.1)(chr4:g.80921091::chr17:g.7580615 )	PRECISE		MANUAL_OK	3to3	-	0	NA	0	15	26	14
P-0007176-T01-IM5	SOMATIC	DICER1	CLMN	14	14	95596261	95677606	Intron of DICER1(-): 134bp after exon 6	Intron of CLMN(-): 390bp before exon 7	GRCh37	DUPLICATION	DICER1 (NM_030621) - CLMN (NM_024734) rearrangement : c.573+134_c.609-390dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (DICER1-CLMN)	81345	NA	0	11	8	9
P-0007861-T01-IM5	SOMATIC	BRAF	AGAP3	7	7	140490697	150825991	Intron of BRAF(-): 3Kb before exon 9	Intron of AGAP3(+): 220bp after exon 10	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) rearrangement: c.1326+220:AGAP3_c.1141-3313:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGAP3-BRAF)	10335294	NA	0	3	8	3
P-0005933-T01-IM5	SOMATIC	ASXL1	ASXL1	20	20	31001082	31021254	Intron of ASXL1(+): 15Kb before exon 4	Exon 11 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.253-14849_c.1253dup.	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	20172	NA	0	11	13	11
P-0007780-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55198715	55223122	Intron of EGFR(+): 11Kb before exon 2	Intron of EGFR(+): 401bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-11264_c.890-401del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	24407	NA	0	102	134	374
P-0005691-T01-IM5	SOMATIC	BRIP1	PITPNC1	17	17	59760662	65375550	Exon 20 of BRIP1(-)	Intron of PITPNC1(+): 1Kb after exon 1	GRCh37	INVERSION	BRIP1 (NM_032043)  -  PITPNC1 (NM_012417)  Rearrangement : c.3745:BRIP1_c.48+1232:PITPNC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (BRIP1-PITPNC1)	5614888	NA	0	15	29	15
P-0005255-T01-IM5	SOMATIC	NOTCH2	PIP5K1A	1	1	120465279	151194281	Exon 27 of NOTCH2(-)	Intron of PIP5K1A(+): 2Kb before exon 2	GRCh37	INVERSION	PIP5K1A  (NM_001135638) - NOTCH2 (NM_024408) Rearrangement: c.86-2440:PIP5K1A_c.4982:NOTCH2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (PIP5K1A-NOTCH2)	30729002	NA	0	102	107	161
P-0006217-T01-IM5	SOMATIC	NOTCH1	TRAF2	9	9	139402805	139788855	Exon 20 of NOTCH1(-)	5-UTR of TRAF2(+): 4Kb before coding start	GRCh37	INVERSION	TRAF2 (NM_021138) - NOTCH1 (NM_017617) rearrangement: c.-28-4310:TRAF2_c.3204:NOTCH1inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (TRAF2-NOTCH1)	386050	NA	0	9	16	9
P-0008406-T01-IM5	SOMATIC	FGFR1	TACC1	8	8	38283762	38577463	Exon 5 of FGFR1(-)	IGR: 8Kb before TACC1(+)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: chr8:g.38577463_c.716inv	PRECISE		MANUAL_OK	3to3	-	293701	NA	0	71	64	52
P-0007880-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55167205	55223233	Intron of EGFR(+): 43Kb before exon 2	Intron of EGFR(+): 290bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:c.89-42774_c.890-290del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	56028	NA	0	102	80	110
P-0007880-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268668	55270373	Intron of EGFR(+): 213bp before exon 25	Intron of EGFR(+): 55bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-213_c.3271+55del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	1705	NA	0	102	202	501
P-0005168-T01-IM5	SOMATIC	RET	CCDC6	10	10	43608797	61623953	Intron of RET(+): 207bp before exon 10	Intron of CCDC6(-): 11Kb before exon 2	GRCh37	INVERSION	CCDC6  (NM_005436) - RET  (NM_020975)  Fusion ( CCDC6 Exon1 fused to RET Exon10 )  :  c.304-11493:CCDC6_c.1760-207:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (CCDC6-RET)	18015156	NA	0	7	13	7
P-0000208-T02-IM5	SOMATIC	KIF5B	RET	10	10	32313935	43611647	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 385bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused with RET exons 12- 20): c.1726-1971:KIF5B_c.2137-385:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297712	NA	0	82	89	79
P-0005098-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39844578	42868037	Intron of ERG(-): 26Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10 ) :  c.127-1532:TMPRSS2_c.18+25709:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3023459	NA	0	3	11	3
P-0006369-T01-IM5	SOMATIC	PTPRD	PTPRD	9	9	8492866	8769434	Exon 27 of PTPRD(-)	5-UTR of PTPRD(-): 36Kb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.-103-35488_2463del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	276568	NA	0	11	12	11
P-0007500-T01-IM5	SOMATIC	SLIT3	FGFR4	5	5	168772933	176519893	IGR: 45Kb after SLIT3(-)	Intron of FGFR4(+): 108bp after exon 8	GRCh37	DUPLICATION	FGFR4 (NM_213647) rearrangement: chr5:g.168772933 _c.1057+108:FGFR4dup	PRECISE		MANUAL_OK	5to3	-	7746960	NA	0	12	16	12
P-0008869-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39825206	42872350	Intron of ERG(-): 8Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exons 2-10) : c.56-2234:TMPRSS2_c.19-7662:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3047144	NA	0	42	46	42
P-0005065-T03-IM5	SOMATIC	MRE11A	FEZ1	11	11	94226059	125397563	5-UTR of MRE11A(-): 92bp before coding start	IGR: 39Kb before FEZ1(-)	GRCh37	DELETION	MRE11A(NM_005591)  Rearrangement :  c.-92:MRE11A_chr11:125397563del	PRECISE		MANUAL_OK	3to5	-	31171504	NA	0	25	28	22
P-0005065-T03-IM5	SOMATIC	EP300	TOP2A	22	17	41523648	38565813	Exon 4 of EP300(+)	Intron of TOP2A(-): 931bp before exon 11	GRCh37	TRANSLOCATION	EP300(NM_001429) Rearrangement :  t(22;17)(22q13.2;17q21.2)(chr22:g.41523648::chr17:g.38565813)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	59	0	54
P-0009856-T01-IM5	SOMATIC	STK11	C19orf26	19	19	1219350	1231272	Exon 3 of STK11(+)	Exon 9 of C19orf26(-)	GRCh37	DELETION	STK11 (NM_000455) rearrangement : c.402_*3697del	PRECISE		MANUAL_OK	3to5	Antisense fusion	11922	NA	0	68	73	68
P-0007705-T01-IM5	SOMATIC	ALK	EML4	2	2	29447417	42528485	Intron of ALK(-): 910bp after exon 19	Exon 13 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1594:EML4_c.3172+910:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EML4-ALK)	13081068	NA	0	102	119	144
P-0004759-T01-IM5	SOMATIC	STK11	STK11	19	19	1221542	1226485	Intron of STK11(+): 203bp after exon 6	Exon 9 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement : c.862+203_1141del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4943	NA	0	18	45	18
P-0004759-T01-IM5	SOMATIC	TCF3	TCF3	19	19	1615369	1624051	Exon 18 of TCF3(-)	Intron of TCF3(-): 52bp before exon 7	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement : c.500-52_1586+316del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	8682	NA	0	15	15	14
P-0004759-T01-IM5	SOMATIC	MSL3	RB1	X	13	11732599	49047485	IGR: 44Kb before MSL3(+)	Intron of RB1(+): 11bp before exon 24	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement : t(13;X)(13q14.2;Xp22.2)(chr13:g.49047485::chrX:g.11732599)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	23	34
P-0008785-T01-IM5	SOMATIC	RAD51AP2	ALK	2	2	17466111	29432723	IGR: 226Kb before RAD51AP2(-)	Exon 25 of ALK(-)	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3765_chr2:g.17466111inv	PRECISE		MANUAL_OK	3to3	-	11966612	NA	0	96	84	96
P-0006136-T01-IM5	SOMATIC	TCF7L2	TCF7L2	10	10	114905949	114921370	Intron of TCF7L2(+): 93bp after exon 7	Intron of TCF7L2(+): 920bp after exon 13	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.875+93_c.1391+920del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	15421	NA	0	17	19	17
P-0008947-T01-IM5	SOMATIC	ATM	ELOVL4	11	6	108160279	80553916	Intron of ATM(+): 50bp before exon 29	IGR: 71Kb before ELOVL4(-)	GRCh37	TRANSLOCATION	ATM (NM_000051) Rearrangement : t(6;11)(6q14.1;11q22.3)(chr6:g.80553916::chr11:g.108160279)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	28	0	17
P-0004952-T01-IM5	SOMATIC	SLC41A3	MCL1	3	1	125736765	150551707	Intron of SLC41A3(-): 1Kb before exon 6	Exon 1 of MCL1(-)	GRCh37	TRANSLOCATION	SLC41A3 (NM_001008485) - MCL1 (NM_021960) rearrangement : t(1;3)(1q21.3;3q21.2)(chr1:g.150551707::chr3:g.125736765)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (SLC41A3-MCL1)	0	NA	0	27	0	26
P-0009375-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72822915	72963250	Intron of ZFHX3(-): 168bp before exon 10	Intron of ZFHX3(-): 21Kb after exon 3	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3216+21118_c.9428-168del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: out of frame	140335	NA	0	18	17	17
P-0008923-T01-IM5	SOMATIC	GLI1	LGR5	12	12	57857454	71939986	5-UTR of GLI1(+): 21bp before coding start	Intron of LGR5(+): 7Kb before exon 5	GRCh37	INVERSION	GLI1 (NM_005269) - LGR5 (NM_003667) rearrangement: c.-21:GLI1_c.429-6867:LGR5inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	14082532	NA	0	17	32	10
P-0009240-T01-IM5	SOMATIC	POLE	POLE	12	12	133219568	133222901	Exon 36 of POLE(-)	Intron of POLE(-): 2Kb before exon 33	GRCh37	DUPLICATION	POLE (NM_006231) rearrangement: c.4150-2338_c.4566dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3333	NA	0	10	24	8
P-0009240-T01-IM5	SOMATIC	SH2D1A	SH2D1A	X	X	123499635	123505840	Exon 2 of SH2D1A(+)	3-UTR of SH2D1A(+): 599bp after coding stop	GRCh37	DUPLICATION	SH2D1A (NM_002351) rearrangement: c.162_c.*599dup	PRECISE		MANUAL_OK	5to3	-	6205	NA	0	32	60	30
P-0009813-T01-IM5	SOMATIC	RPLP0P2	RPS6KA4	11	11	61400293	64136064	5-UTR of RPLP0P2(+): 7Kb before coding start	Exon 11 of RPS6KA4(+)	GRCh37	INVERSION	RPS6KA4 (NM_003942) rearrangement : c.1325:RPS6KA4_chr11:g.61400293inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	2735771	NA	0	32	42	31
P-0009813-T01-IM5	SOMATIC	MEN1	MEN1	11	11	64577362	64579361	Exon 3 of MEN1(-)	Promoter of MEN1(-): 595bp from tx start	GRCh37	DELETION	MEN1 (NM_000244) rearrangement : c.-1283_220del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1999	NA	0	46	73	45
P-0008344-T01-IM5	SOMATIC	AR	AR	X	X	66673283	66931407	IGR: 91Kb before AR(+)	Exon 4 of AR(+)	GRCh37	DUPLICATION	AR (NM_000044) Rearrangement : chrX:g.66673283_c.2049:ARdup	PRECISE		MANUAL_OK	5to3	-	258124	NA	0	52	63	51
P-0005953-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39804588	42876716	Intron of ERG(-): 9Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) reciprocal fusion (TMPRSS2 exon1 fused with ERG exons 5-11) : c.55+3161:TMPRSS2_c.258-9105:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3072128	NA	0	50	41	50
P-0007771-T01-IM5	SOMATIC	DOT1L	LOC284100	19	17	2228256	36167655	Intron of DOT1L(+): 1Kb after exon 27	IGR: 35Kb before LOC284100(-)	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(17;19)(q12;p12)(chr17:g.36167655::chr19:g.2228256 )	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	33	13
P-0004790-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11934171	12015975	Intron of ETV6(+): 29Kb after exon 2	Intron of ETV6(+): 6Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.163+28658_c.464-6383dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	81804	NA	0	23	19	22
P-0004790-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646467	149782207	Intron of ROS1(-): 889bp before exon 34	Intron of CD74(-): 19bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (exons 1-7 of CD74 fused to exons 34-43 of ROS1) : t(5;6)(q32;q22.1)(chr5:g.149782207::chr6:g.117646467)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	42	21	41
P-0004946-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32905203	32915545	Intron of BRCA2(+): 36bp after exon 9	Intron of BRCA2(+): 212bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement event : c.793+36_6841+212del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	10342	NA	0	7	22	7
P-0004946-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32915403	32920317	Intron of BRCA2(+): 70bp after exon 11	Intron of BRCA2(+): 647bp before exon 13	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement event : c.6841+70_6938-647inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	4914	NA	0	19	46	19
P-0007267-T01-IM5	SOMATIC	NCRNA00114	TMPRSS2	21	21	40058491	42871324	IGR: 52Kb before NCRNA00114(-)	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement : c.56-1208:TMPRSS2_chr21:g.40058491del	PRECISE		MANUAL_OK	3to5	-	2812833	NA	0	36	61	36
P-0007533-T01-IM5	SOMATIC	SND1	BRAF	7	7	127393192	140482226	Intron of SND1(+): 32Kb after exon 10	Intron of BRAF(-): 595bp after exon 10	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-10 with BRAF exons 11-18)  : c.1152+31738:SND1_c.1314+595:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13089034	NA	0	102	102	199
P-0007533-T01-IM5	SOMATIC	AR	OPHN1	X	X	66931362	67175446	Exon 4 of AR(+)	IGR: 87Kb before OPHN1(-)	GRCh37	INVERSION	AR (NM_000044) rearrangement : c.2004:AR_chrX:g.67175446inv	PRECISE		MANUAL_OK	3to3	-	244084	NA	0	102	84	113
P-0005976-T01-IM5	SOMATIC	ACAP1	TP53	17	17	7250910	7580636	Intron of ACAP1(+): 331bp before exon 15	5-UTR of TP53(-): 724bp before coding start	GRCh37	INVERSION	ACAP1(NM_014716) and TP53(NM_000546) rearrangement : c.1344-331:ACAP1_c.-28-696:TP53inv	PRECISE		MANUAL_OK	3to3	Transcript fusion (ACAP1-TP53)	329726	NA	0	52	54	50
P-0008156-T01-IM5	SOMATIC	KREMEN1	SMARCA4	22	19	29541151	11100031	Intron of KREMEN1(+): 3Kb after exon 9	Exon 6 of SMARCA4(+)	GRCh37	TRANSLOCATION	KREMEN1 (NM_032045) - SMARCA4 (NM_003072)  rearrangement: t(19;22)(p13.2;q12.1)(chr19:g.11100031::chr22:g.29541151)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (KREMEN1-SMARCA4)	0	NA	0	53	27	53
P-0008156-T01-IM5	SOMATIC	MTMR3	DNMT1	22	19	30432351	10256978	IGR: 5Kb after MTMR3(+)	Intron of DNMT1(-): 49bp after exon 28	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(19;22)(p13.2;q11.21)(chr19:g.10256978::chr22:g.30432351)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	12	22
P-0009501-T01-IM5	SOMATIC	PDE3A	PDE3A	12	12	20290558	20784731	IGR: 232Kb before PDE3A(+)	Intron of PDE3A(+): 2Kb after exon 6	GRCh37	INVERSION	PDE3A (NM_000921) rearrangement: chr12:g.20290558_c.1760+1670inv	PRECISE		MANUAL_OK	5to5	-	494173	NA	0	14	15	14
P-0007169-T01-IM5	SOMATIC	TP53	TP53	17	17	7571803	7577114	3-UTR of TP53(-): 1Kb after coding stop	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.824_c.*1124del	PRECISE		MANUAL_OK	3to5	-	5311	NA	0	64	126	64
P-0007169-T01-IM5	SOMATIC	PARK2	PARK2	6	6	162394382	162603962	Exon 6 of PARK2(-)	Intron of PARK2(-): 18Kb after exon 4	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.534+18201_c.686del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	209580	NA	0	11	18	10
P-0007871-T01-IM5	SOMATIC	TOP1	TOP1	20	20	39667527	39751828	Intron of TOP1(+): 9Kb after exon 2	Intron of TOP1(+): 7bp before exon 21	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.58+9432_ c.2196-7del	PRECISE		MANUAL_OK	3to5	Deletion of 18 exons: out of frame	84301	NA	0	23	61	13
P-0006873-T01-IM5	SOMATIC	ZCCHC6	EGFR	9	7	88930920	55238031	Intron of ZCCHC6(-): 1Kb after exon 17	Exon 16 of EGFR(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) - ZCCHC6  (NM_024617) rearrangement :  : t(7;9)(chr7p11.2;chr9q21.33)(chr7:g.55238031::chr9:g.88930920)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EGFR-ZCCHC6)	0	NA	0	27	11	27
P-0009914-T01-IM5	SOMATIC	RAD21	FGF12	8	3	117866571	191588402	Exon 9 of RAD21(-)	IGR: 271Kb before FGF12(-)	GRCh37	TRANSLOCATION	RAD21 (NM_006265) - FGF12 (NM_021032) rearrangement: t(3;8)(q28;q24.11)(chr3:g.191588402::chr8:g.117866571)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	44	33
P-0005508-T01-IM5	SOMATIC	DOT1L	DOT1L	19	19	2210659	2222449	Exon 14 of DOT1L(+)	Exon 24 of DOT1L(+)	GRCh37	INVERSION	DOT1L (NM_032482) Rearrangement : c.1156_c.3281inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	11790	NA	0	36	48	35
P-0009634-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55207609	55222130	Intron of EGFR(+): 2Kb before exon 2	Intron of EGFR(+): 285bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2370_889+285del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	14521	NA	0	15	15	14
P-0009634-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55238077	55239480	Exon 16 of EGFR(+)	Intron of EGFR(+): 574bp after exon 16	GRCh37	DELETION	EGFR (NM_005228) Rearrangement :  c.1881-791_1919+574del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1403	NA	0	67	76	65
P-0006897-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57488251	57493157	Intron of NAB2(+): 144bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2(NM_005967) - STAT6(NM_003153) Fusion ( NAB2 exons 1 to 6 fused with STAT6 exons 16 to 22) : c.1469-144:NAB2_c.1811:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	4906	NA	0	96	120	93
P-0009301-T01-IM5	SOMATIC	TRIB2	MSH6	2	2	13175937	48026326	IGR: 319Kb before TRIB2(+)	Exon 4 of MSH6(+)	GRCh37	INVERSION	MSH6 (NM_000179) rearrangement: chr2:g.13175937_c.1204inv	PRECISE		MANUAL_OK	5to5	-	34850389	NA	0	16	36	15
P-0009301-T01-IM5	SOMATIC	ALK	EML4	2	2	29446651	42501297	Intron of ALK(-): 257bp before exon 20	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29) : c.668-6693:EML4_c.3173-257:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13054646	NA	0	40	54	40
P-0005888-T01-IM5	SOMATIC	EP300	EP300	22	22	41547737	41564509	Intron of EP300(+): 100bp before exon 15	Exon 24 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429)  Rearrangement :  c.2818-100_ 3931del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	16772	NA	0	84	79	80
P-0008283-T01-IM5	SOMATIC	SMAD4	RGS17	18	6	48591962	153659215	Exon 9 of SMAD4(+)	IGR: 327Kb before RGS17(-)	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) rearrangement: t(6;18)(q36.2;q21.2)(chr6:g.153659215::chr18:g.48591962)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	16	18
P-0004826-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40015403	42871052	5-UTR of ERG(-): 68Kb before coding start	Intron of TMPRSS2(-): 936bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 2-10) :  c.56-936:TMPRS2_c.-150+18179:ERGdel	IMPRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2855649	NA	0	3	0	3
P-0009687-T01-IM5	SOMATIC	TP53	SPG11	17	15	7579206	44943476	Intron of TP53(-): 106bp after exon 4	Intron of SPG11(-): 213bp after exon 6	GRCh37	TRANSLOCATION	TP53 (NM_000546) - SPG11 (NM_025137) rearrangement: t(15;17)(q21.1;p13.1)(chr15:g.44943476::chr17:g.7579206)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	16	16	16
P-0009687-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864271	42876697	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+3180:TMPRSS2_c.18+6016:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3012426	NA	0	68	77	68
P-0009027-T01-IM5	SOMATIC	LATS2	NUP107	13	12	21620073	69121423	Exon 2 of LATS2(-)	Intron of NUP107(+): 254bp after exon 20	GRCh37	TRANSLOCATION	LATS2 (NM_014572) - NUP107 (NM_020401) rearrangement: t(12;13)(q15;q21.1)(chr12:g.69121423::chr13:g.21620073)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	43	31
P-0009027-T01-IM5	SOMATIC	CRYL1	BRCA2	13	13	21104326	32914081	IGR: 4Kb after CRYL1(-)	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: chr13:g.21104326 _c.5589inv	PRECISE		MANUAL_OK	5to5	-	11809755	NA	0	21	60	21
P-0008426-T01-IM5	SOMATIC	PCBP3	NCOA3	21	20	47336467	46268900	Intron of PCBP3(+): 1Kb before exon 9	Intron of NCOA3(+): 105bp after exon 16	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) - PCBP3 (NM_020528) Rearrangement : t(20;21)(20q13.12;21q22.3)(chr20:g.46268900::chr21:g.47336467)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (NCOA3-PCBP3)	0	NA	0	26	0	25
P-0008146-T01-IM5	SOMATIC	BICC1	FGFR2	10	10	60565600	123240154	Intron of BICC1(+): 744bp before exon 16	Intron of FGFR2(-): 619bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused with BICC1 exons 16-21) : c.2302-619:FGFR2_c.2182-744:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62674554	NA	0	47	56	44
P-0009833-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151824753	151846031	IGR: 7Kb before MLL3(-)	Exon 52 of MLL3(-)	GRCh37	DELETION	MLL3 (NM_170606) rearrangement: chr7:g.151824753_c.12981:MLL3del	PRECISE		MANUAL_OK	3to5	-	21278	NA	0	65	61	62
P-0004996-T02-IM5	SOMATIC	SMO	MKRN1	7	7	128845246	140164005	Exon 3 of SMO(+)	Intron of MKRN1(-): 4Kb before exon 3	GRCh37	DELETION	SMO (NM_005631) - MKRN1 (NM_013446) rearrangement : c.740:SMO_c.315-4269:MKRN1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	11318759	NA	0	12	17	11
P-0004801-T01-IM5	SOMATIC	MAP3K13	MAP3K13	3	3	185184276	185191139	Intron of MAP3K13(+): 338bp before exon 10	Exon 11 of MAP3K13(+)	GRCh37	DUPLICATION	MAP3K13(NM_004721) Rearrangement :  c.1506-338_2020dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6863	NA	0	17	33	9
P-0009102-T01-IM5	SOMATIC	ALK	EML4	2	2	29446513	42528137	Intron of ALK(-): 119bp before exon 20	Intron of EML4(+): 244bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused in frame with ALK exons 20-29, which include the ALK kinase domain): c.1490-244:EML4_c.3173-119:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13081624	NA	0	44	69	43
P-0005863-T01-IM5	SOMATIC	RET	CCDC6	10	10	43610651	61636814	Intron of RET(+): 467bp after exon 11	Intron of CCDC6(-): 24Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon1 with RET exons 12-20): c.304-24354:CCDC6_ c.2136+467:RETinv.	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18026163	NA	0	42	61	41
P-0009715-T01-IM5	SOMATIC	RB1	RB1	13	13	48876093	48878176	Promoter of RB1(+): 2Kb from tx start	Exon 1 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.-1956_c.128del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2083	NA	0	11	50	11
P-0002273-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864516	42866980	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 475bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.127-475:TMPRSS2_c.18+5771:ERGdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002464	NA	0	5	0	5
P-0008787-T01-IM5	SOMATIC	MLL	PHLDB1	11	11	118368635	118511744	Intron of MLL(+): 16bp before exon 21	Intron of PHLDB1(+): 1Kb before exon 14	GRCh37	DUPLICATION	PHLDB1 (NM_001144758) - MLL (NM_001197104) rearrangement: c.2737-1228:PHLDB1_c.5665-16:MLLdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (PHLDB1-MLL)	143109	NA	0	13	33	14
P-0008787-T01-IM5	SOMATIC	KEAP1	DNAH1	19	3	10602396	52380229	Exon 3 of KEAP1(-)	Intron of DNAH1(+): 259bp before exon 11	GRCh37	TRANSLOCATION	KEAP1 (NM_203500) - DNAH1(NM_015512) rearrangement: t(3;9)(p21.1;p13.2)(chr3:g.52380229::chr19:g.10602396)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (KEAP1-DNAH1)	0	NA	0	13	54	13
P-0008383-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39871789	42874665	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11) : c.56-4549:TMPRSS2_c.40-54245:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3002876	NA	0	20	29	18
P-0008781-T01-IM5	SOMATIC	FANCA	PAX5	16	9	89805464	36915716	Intron of FANCA(-): 77bp after exon 41	Intron of PAX5(-): 8Kb after exon 7	GRCh37	TRANSLOCATION	FANCA (NM_000135) - PAX5 (NM_016734) rearrangement: t(9;16)(p13;q24)(chr9:g.36915716::chr16:g.89805464 )	PRECISE		MANUAL_OK	3to3	-	0	NA	0	34	24	32
P-0008868-T01-IM5	SOMATIC	RNF43	MTMR4	17	17	56492693	56579447	Exon 2 of RNF43(-)	Intron of MTMR4(-): 2Kb after exon 15	GRCh37	DELETION	MTMR4 (NM_004687) - RNF43 (NM_017763) rearrangement: c.1811+1658:MTMR4_c.246:RNF43del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MTMR4-RNF43)	86754	NA	0	13	24	12
P-0007240-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	53237805	53239900	Intron of KDM5C(-): 2Kb after exon 12	Exon 11 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement : c.1541_1746+1791del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2095	NA	0	15	12	11
P-0008003-T01-IM5	SOMATIC	NF1	TIMP2	17	17	29559958	76914444	Intron of NF1(+): 59bp after exon 26	Intron of TIMP2(-): 7Kb after exon 1	GRCh37	INVERSION	NF1  (NM_001042492) - TIMP2  (NM_003255) rearrangement :  c.3496+59:NF1_c.130+6597:TIMP2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (TIMP2-NF1)	47354486	NA	1	19	21	18
P-0005953-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39804588	42876716	Intron of ERG(-): 9Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exons 3 to 10) : c.55+3161:TMPRSS2_c.237-9105:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3072128	NA	0	86	72	84
P-0008939-T01-IM5	SOMATIC	CAMTA1	PIK3CD	1	1	7007115	9778762	Intron of CAMTA1(+): 122Kb after exon 3	Exon 9 of PIK3CD(+)	GRCh37	DELETION	CAMTA1 (NM_015215) -PIK3CD (NM_005026) Rearrangement : c.234+121845:CAMTA1_c.1031:PIK3CDdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CAMTA1-PIK3CD)	2771647	NA	0	27	31	26
P-0005546-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831655	42868555	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 and ERG exons 2-10) : c.126+1491:TMPRSS2_c.19-14111:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3036900	NA	0	23	34	23
P-0008525-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862262	42869423	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 623bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-11) : c.126+623:TMPRSS2_c.18+8025:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3007161	NA	0	54	44	52
P-0008525-T01-IM5	SOMATIC	CEP110	SETD2	9	3	123913096	47162785	Intron of CEP110(+): 335bp after exon 23	Exon 3 of SETD2(-)	GRCh37	TRANSLOCATION	CNTRL(NM_007018) - SETD2 (NM_014159) Rearrangement : t(9;2)(9q33.2;3p21.31)(chr9:g.123913096::chr3:g.47162785)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (CEP110-SETD2)	0	NA	0	37	16	37
P-0007890-T01-IM5	SOMATIC	RBM10	CLCN5	X	X	47040950	49862864	Exon 14 of RBM10(+)	3-UTR of CLCN5(+): 6Kb after coding stop	GRCh37	DELETION	RBM10 (NM_001204468) - CLCN5 (NM_001127898) rearrangement: c.1675:RBM10_c.*5988:CLCN5del	PRECISE		MANUAL_OK	3to5	-	2821914	NA	0	92	89	91
P-0005910-T01-IM5	SOMATIC	TCF7L2	LRRC27	10	10	114900931	134178279	Intron of TCF7L2(+): 12bp before exon 5	Intron of LRRC27(+): 649bp before exon 10	GRCh37	INVERSION	TCF7L2 (NM_001146274) and LRRC27 (NM_030626) rearrangement : c.553-12:TCF7L2_c.1290-649:LRRC27inv	PRECISE		MANUAL_OK	5to5	-	19277348	NA	0	21	54	14
P-0007392-T01-IM5	SOMATIC	SCRIB	BRAF	8	7	144876675	140482150	Intron of SCRIB(-): 533bp after exon 27	Intron of BRAF(-): 657bp before exon 11	GRCh37	TRANSLOCATION	SCRIB (NM_182706) - BRAF (NM_004333) rearrangement: t(7;8)(q34;q24.3)(chr7:g.140482150::chr8:g.144876675)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (SCRIB-BRAF)	0	NA	0	55	12	54
P-0009759-T01-IM5	SOMATIC	NF1	SHISA9	17	16	29550486	13117863	Exon 16 of NF1(+)	Intron of SHISA9(+): 107Kb after exon 2	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - SHISA9 (NM_001145204) rearrangement: t(16;17)(p13.12;q11.2)(chr16:g.13117863::chr17:g.29550486 )	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (NF1-SHISA9)	0	NA	0	15	9	14
P-0009759-T01-IM5	SOMATIC	DNAJB1	ZNF91	19	19	14627300	23268574	Exon 2 of DNAJB1(-)	IGR: 272Kb before ZNF91(-)	GRCh37	INVERSION	DNAJB1 (NM_006145) rearrangement: c.770_ chr19:g.23268574del	PRECISE		MANUAL_OK	5to5	-	8641274	NA	0	29	61	27
P-0004963-T01-IM5	SOMATIC	BCOR	BCOR	X	X	39916405	39917913	Intron of BCOR(-): 3bp after exon 10	Intron of BCOR(-): 1Kb before exon 10	GRCh37	DELETION	BCOR (NM_001123385) rearrangement : c.4429-1339_4595+3del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	1508	NA	0	15	30	14
P-0005065-T02-IM5	SOMATIC	DNAJB1	TPM4	19	19	14628370	16168702	Intron of DNAJB1(-): 512bp before exon 2	IGR: 10Kb before TPM4(+)	GRCh37	DUPLICATION	DNAJB1(NM_006145) Rearrangement : c.212-512_chr19:16168702dup	PRECISE		MANUAL_OK	5to3	-	1540332	NA	0	14	42	14
P-0008915-T01-IM5	SOMATIC	MET	PTPRZ1	7	7	116339315	121516755	Exon 2 of MET(+)	Intron of PTPRZ1(+): 3Kb after exon 1	GRCh37	DUPLICATION	PTPRZ1 (NM_002851) - MET (NM_000245) rearrangement: c.58+3144:PTPRZ1_c.177:METdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (PTPRZ1-MET)	5177440	NA	0	6	6	5
P-0004516-T02-IM5	SOMATIC	ALK	GCC2	2	2	29446526	109110517	Intron of ALK(-): 132bp before exon 20	Intron of GCC2(+): 1Kb before exon 20	GRCh37	INVERSION	GCC2 (NM_181453) - ALK (NM_004304) rearrangement : c.4448-1230:GCC2_c.3173-132:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (GCC2-ALK)	79663991	NA	0	31	57	17
P-0004916-T01-IM5	SOMATIC	RET	CCDC6	10	10	43610353	61613613	Intron of RET(+): 169bp after exon 11	Intron of CCDC6(-): 1Kb before exon 2	GRCh37	INVERSION	CCDC6(NM_005436)-RET(NM_020975) Fusion(CCDC6 exon 2 fused to RET exon11) : c.304-1153:CCDC6_c.2136+169:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18003260	NA	0	90	70	87
P-0005698-T01-IM5	SOMATIC	DLG4	TP53	17	17	7104886	7579659	Intron of DLG4(-): 1Kb after exon 8	Intron of TP53(-): 41bp after exon 3	GRCh37	INVERSION	TP53 (NM_000546) - DLG4  (NM_001128827) rearrangement :  c.96+41:TP53_c.778+1336:DLG4inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	474773	NA	0	18	41	18
P-0005698-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39925978	42869650	Intron of ERG(-): 22Kb after exon 3	Intron of TMPRSS2(-): 396bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-10) : c.126+396:TMPRSS2_c.39+21608:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2943672	NA	0	7	9	7
P-0008355-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29683339	128673264	Intron of EWSR1(+): 216bp after exon 6	Intron of FLI1(+): 2Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-7 fused with FLI1 exons 6-9)  : t(22;11)(22q12.2;11q24.3)(chr22:g.29683339 ::chr11:g.128673264)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	8	3	7
P-0008591-T01-IM5	SOMATIC	ZFHX3	BATF	16	14	72829355	76000033	Exon 9 of ZFHX3(-)	Intron of BATF(+): 9Kb after exon 2	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) - BATF (NM_006399) rearrangement: t(14;16)(q24.3;q22.2)(chr14:g.76000033::chr16:g.72829355 )	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (ZFHX3-BATF)	0	NA	0	54	75	51
P-0008591-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883119	42868017	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11) : c.127-1512:TMPRSS2_c.39+64467:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2984898	NA	0	14	24	14
P-0004889-T01-IM5	SOMATIC	NOTCH3	AKAP8	19	19	15290032	15416060	Exon 22 of NOTCH3(-)	IGR: 48Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement:c.3522_chr19:g.15416060del	PRECISE		MANUAL_OK	3to5	-	126028	NA	0	24	32	23
P-0005779-T01-IM5	SOMATIC	INPP4B	INPP4B	4	4	143043303	143073448	Exon 22 of INPP4B(-)	Intron of INPP4B(-): 6Kb before exon 19	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement : c.1564-6299_c.2113del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	30145	NA	0	12	21	7
P-0005122-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46130850	46246524	Intron of ARID2(+): 6Kb after exon 3	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2(NM_152641) Rearrangement :  c.284+5753_4618del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	115674	NA	0	60	51	59
P-0009183-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21971010	22166429	Exon 2 of CDKN2A(-)	IGR: 45Kb after CDKN2BAS(+)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement : c.391_chr9:g.21971010del CDKN2Ap16INK4A (NM_000077) rearrangement: c.348_chr9:g.21971010del	PRECISE		MANUAL_OK	3to5	-	195419	NA	0	25	30	23
P-0008691-T01-IM5	SOMATIC	ETV6	ITPR2	12	12	12029665	26940768	Intron of ETV6(+): 7Kb after exon 5	Intron of ITPR2(-): 2Kb after exon 2	GRCh37	DUPLICATION	ETV6 (NM_001987) - ITPR2 (NM_002223) rearrangement: c.1009+6762:ETV6_c.163+2322:ITPR2dup.	PRECISE		MANUAL_OK	5to3	-	14911103	NA	0	30	27	24
P-0008691-T01-IM5	SOMATIC	FGFR1	FGFR1	8	8	38285753	38294936	Intron of FGFR1(-): 111bp after exon 3	Intron of FGFR1(-): 3Kb after exon 3	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.191-7470_c.541+117inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	9183	NA	0	102	90	246
P-0003908-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39934598	42867649	Intron of ERG(-): 13Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2933051	NA	0	10	14	12
P-0006535-T01-IM5	SOMATIC	LATS2	LATS2	13	13	21557683	21603391	Exon 5 of LATS2(-)	Intron of LATS2(-): 16Kb after exon 2	GRCh37	DUPLICATION	LATS2 (NM_014572) Rearrangement : c.342+16433_c.2162dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	45708	NA	0	57	38	55
P-0004880-T02-IM5	SOMATIC	EP300	EP300	22	22	41488740	41574930	5-UTR of EP300(+): 269bp before coding start	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement : c.-269_7215del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	86190	NA	0	15	14	15
P-0009056-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39857843	42870979	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 863bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-863:TMPRSS2_c.40-40299:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3013136	NA	0	10	15	9
P-0007046-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3805553	3824671	Intron of CREBBP(-): 2Kb after exon 19	Exon 12 of CREBBP(-)	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement : c.2182_3698+1736dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	19118	NA	0	39	95	39
P-0008265-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29687673	32416235	Intron of EWSR1(+): 85bp after exon 8	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - WT1 (NM_024426) in-frame fusion (EWSR1 exons 1-8 fused with WT1 exons 8-10) : t(22;11)(q12.2;p13)( chr22:g.29687673:: chr11:g.32416235)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	8	11	8
P-0009943-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49439742	49443940	Exon 18 of MLL2(-)	Exon 11 of MLL2(-)	GRCh37	DUPLICATION	MLL2 (NM_003482) rearrangement: c.3431_c.4702dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	4198	NA	0	49	46	48
P-0009221-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72831760	72835465	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-): 1Kb before exon 8	GRCh37	DUPLICATION	ZFHX3 (NM_006885) rearrangement: c.3865-1437_c.4821dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3705	NA	0	44	58	43
P-0006412-T01-IM5	SOMATIC	LUC7L2	BRAF	7	7	139100194	140501109	Intron of LUC7L2(+): 2Kb before exon 9	Intron of BRAF(-): 103bp after exon 6	GRCh37	DELETION	LUC7L2 (NM_001244584) - BRAF (NM_004333) Rearrangement : c.1008-2090:LUC7L2_c.860+103:BRAFdel	PRECISE		MANUAL_OK	3to5	Antisense fusion	1400915	NA	0	20	29	15
P-0006208-T01-IM5	SOMATIC	EWSR1	ERG	22	21	29683591	39756899	Intron of EWSR1(+): 468bp after exon 6	Intron of ERG(-): 1Kb before exon 11	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - ERG (NM_004449) fusion (EWSR1 exons 1-7 fused with ERG exon11) : t(21;22)(21q22.2;22q12.2)(chr21:g.39756899::chr22:g.29683591)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-ERG)	0	NA	0	48	33	48
P-0008771-T01-IM5	SOMATIC	FGFR3	C4orf48	4	4	1807251	2024681	Intron of FGFR3(+): 35bp before exon 12	IGR: 19Kb before C4orf48(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) rearrangement: c.1535-35:FGFR3_chr4:g.202468dup	PRECISE		MANUAL_OK	5to3	-	217430	NA	0	6	2	6
P-0002990-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880577	42869167	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 879bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-11) : :TMPRSS2_:c.40-63033:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2988590	NA	0	54	46	51
P-0005142-T01-IM5	SOMATIC	SMARCA4	LDLR	19	19	11169133	11200232	Intron of SMARCA4(+): 94bp after exon 29	Exon 1 of LDLR(+)	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.4533+94:SMARCA4_c.8:LDLRdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SMARCA4-LDLR)	31099	NA	0	7	0	7
P-0005811-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44941009	44941916	Intron of KDM6A(+): 812bp before exon 21	Intron of KDM6A(+): 31bp after exon 21	GRCh37	DELETION	KDM6A  (NM_021140) Rearrangement :  c.3145-812_3209+31del	IMPRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	907	NA	1	102	0	116
P-0007600-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265666	41266570	Intron of CTNNB1(+): 94bp after exon 2	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement : c.9_367del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	904	NA	0	54	0	51
P-0004589-T01-IM5	SOMATIC	CTCF	CTCF	16	16	67641976	67645823	5-UTR of CTCF(+): 3Kb before coding start	Intron of CTCF(+): 31bp before exon 4	GRCh37	DELETION	CTCF (NM_006565) rearrangement : c.-9-2751_782-31del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3847	NA	0	18	22	15
P-0007307-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39844413	42869887	Intron of ERG(-): 26Kb after exon 1	Intron of TMPRSS2(-): 159bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 to 2 fused with ERG exons 2 to 10) :  c.126+159:TMPRSS2_c.18+25874:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3025474	NA	0	36	35	36
P-0001319-T05-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878050	42879131	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 746bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449)  fusion (TMPRSS2 exon 1  fused with ERG exons 4-11): c.55+746:TMPRSS2_c.40-60506:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001081	NA	0	43	51	42
P-0007749-T01-IM5	SOMATIC	POLD1	POLD1	19	19	50902379	50905197	Intron of POLD1(+): 69bp after exon 2	Intron of POLD1(+): 16bp after exon 4	GRCh37	DUPLICATION	POLD1 (NM_002691) rearrangement:  c.202+69_c.463+16dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	2818	NA	0	56	68	56
P-0007749-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39872199	42875524	Intron of ERG(-): 55Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 fused with ERG exons 4 to 10): c.55+4353:TMPRSS2_c.40-54655:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3003325	NA	0	64	67	64
P-0006331-T01-IM5	SOMATIC	EWSR1	SYN3	22	22	29689303	33161943	Intron of EWSR1(+): 708bp after exon 10	Intron of SYN3(-): 99Kb after exon 5	GRCh37	INVERSION	SYN3 (NM_003490) - EWSR1 (NM_013986) rearrangement: c.711+98959:SYN3_c.1179+708:EWSR1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (SYN3-EWSR1)	3472640	NA	0	67	85	64
P-0004998-T01-IM5	SOMATIC	SOX17	MOS	8	8	55372478	57024193	Exon 2 of SOX17(+)	IGR: 1Kb before MOS(-)	GRCh37	DELETION	SOX17(NM_022454) Rearrangement : c.1168:SOX17_chr8:57024193del	PRECISE		MANUAL_OK	3to5	-	1651715	NA	0	29	40	28
P-0007626-T01-IM5	SOMATIC	NF1	NF1	17	17	29562725	29579415	Exon 28 of NF1(+)	Intron of NF1(+): 541bp before exon 31	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement : c.3805_4111-541inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	16690	NA	0	102	71	97
P-0007626-T01-IM5	SOMATIC	ROS1	GOPC	6	6	117644860	117885764	Intron of ROS1(-): 635bp after exon 34	Intron of GOPC(-): 1Kb before exon 9	GRCh37	DELETION	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-8 fused with ROS1 exons 35-43) : c.1259-1217:GOPC_c.5641+635:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (GOPC-ROS1)	240904	NA	0	102	99	170
P-0006990-T01-IM5	SOMATIC	DDX4	MAP3K1	5	5	55024979	56177931	IGR: 9Kb before DDX4(+)	Exon 14 of MAP3K1(+)	GRCh37	INVERSION	MAP3K1 (NM_005921) rearrangement : chr5:g.55024979_c.2904:MAP3K1inv	PRECISE		MANUAL_OK	3to3	-	1152952	NA	0	9	17	8
P-0007398-T02-IM5	SOMATIC	SKIV2L2	APC	5	5	54673482	112175380	Intron of SKIV2L2(+): 660bp before exon 17	Exon 16 of APC(+)	GRCh37	DELETION	SKIV2L2 (NM_015360) - APC (NM_000038) Rearrangement : c.1811-660:SKIV2L2_c.4089:APCdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SKIV2L2-APC)	57501898	NA	0	38	43	37
P-0006617-T01-IM5	SOMATIC	ASAP2	ALK	2	2	9399298	30142753	Intron of ASAP2(+): 20Kb before exon 2	Intron of ALK(-): 106bp after exon 1	GRCh37	DELETION	ASAP2 (NM_003887) - ALK (NM_004304) rearrangement event : c.127-20148:ASAP2_c.667+106:ALKdel	PRECISE		MANUAL_OK	3to5	Antisense fusion	20743455	NA	0	11	10	11
P-0001347-T02-IM5	SOMATIC	TP53	TP53	17	17	7572319	7574026	3-UTR of TP53(-): 608bp after coding stop	Exon 10 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1001_c.*608del	PRECISE		MANUAL_OK	3to5	-	1707	NA	0	18	40	18
P-0005610-T01-IM5	SOMATIC	SNAPC4	NOTCH1	9	9	139283634	139417327	Intron of SNAPC4(-): 591bp before exon 10	Exon 4 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) - SNAPC4 (NM_003086) rearrangement : c.717:NOTCH1_c.976-591:SNAPC4del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (NOTCH1-SNAPC4)	133693	NA	0	34	56	34
P-0006151-T01-IM5	SOMATIC	ZMAT4	RECQL4	8	8	40459727	145742146	Intron of ZMAT4(-): 21Kb before exon 5	Exon 5 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) - ZMAT4 (NM_024645) rearrangement : c.357:RECQL4_c.578-20947:ZMAT4inv	PRECISE		MANUAL_OK	3to3	-	105282419	NA	0	22	27	21
P-0005599-T01-IM5	SOMATIC	HIST1H3E	HIST1H4H	6	6	26225407	26279570	Exon 1 of HIST1H3E(+)	IGR: 6Kb before HIST1H4H(-)	GRCh37	DELETION	HIST1H3E (NM_003532) rearrangement : c.25:HIST1H3E_chr6:g.26279570del	PRECISE		MANUAL_OK	3to5	-	54163	NA	0	60	102	58
P-0009598-T01-IM5	SOMATIC	JAK3	JAK3	19	19	17952328	17955553	Exon 8 of JAK3(-)	5-UTR of JAK3(-): 327bp before coding start	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.-13-314_c.1012inv	PRECISE		MANUAL_OK	3to3	-	3225	NA	0	9	23	7
P-0009201-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55204237	55222128	Intron of EGFR(+): 6Kb before exon 2	Intron of EGFR(+): 283bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-5742_c.889+283del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	17891	NA	0	98	182	95
P-0009018-T01-IM5	SOMATIC	TP53	TP53	17	17	7576353	7579284	Intron of TP53(-): 500bp after exon 9	Intron of TP53(-): 28bp after exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement : c.375+28_993+500del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons: in frame	2931	NA	0	37	55	36
P-0008064-T01-IM5	SOMATIC	EEA1	CDKN2A	12	9	93282009	21968207	Intron of EEA1(-): 3Kb after exon 2	3-UTR of CDKN2A(-): 21bp after coding stop	GRCh37	TRANSLOCATION	EEA1 (NM_003566) - CDKN2A (NM_000077) rearrangement : t(9;12)(p21.3;q22)(chr9:g.21968207::chr12:g.93282009)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	13	7	13
P-0006108-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862002	42869746	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 300bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 3 to 10) : c.126+300:TMPRSS2_c.18+8285:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3007744	NA	0	4	4	4
P-0006108-T02-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42849497	42866553	Intron of TMPRSS2(-): 950bp before exon 8	Intron of TMPRSS2(-): 48bp before exon 3	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement : c.127-48_795-950dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	17056	NA	0	10	13	10
P-0009490-T01-IM5	SOMATIC	KDM4C	PTPRD	9	9	7149751	8633523	Intron of KDM4C(+): 15Kb before exon 20	Intron of PTPRD(-): 65bp before exon 14	GRCh37	INVERSION	KDM4C (NM_015061) - PTPRD (NM_002839) rearrangement: c.2782-15487:KDM4C_c.211-65:PTPRDinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (KDM4C-PTPRD)	1483772	NA	0	5	4	5
P-0009103-T01-IM5	SOMATIC	NF1	NF1	17	17	29576699	29676171	Intron of NF1(+): 562bp after exon 30	Exon 48 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4110+562_c.7223del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	99472	NA	0	20	40	20
P-0003925-T01-IM3	SOMATIC	RB1	RB1	13	13	48878071	48879154	Exon 1 of RB1(+)	Intron of RB1(+): 969bp after exon 1	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	1083	NA	0	99	91	118
P-0006195-T01-IM5	SOMATIC	RB1	RB1	13	13	48881718	48882517	Intron of RB1(+): 176bp after exon 2	Intron of RB1(+): 975bp after exon 2	GRCh37	DELETION	RB1 (NM_000321) Rearrangement :  c.264+176_264+975del	PRECISE		MANUAL_OK	3to5	Deletion within intron	799	NA	0	16	6	6
P-0008421-T01-IM5	SOMATIC	CYHR1	RECQL4	8	8	145679196	145739625	Intron of CYHR1(-): 353bp before exon 3	Exon 11 of RECQL4(-)	GRCh37	DUPLICATION	CYHR1 (NM_138496) -  RECQL4 (NM_004260) Rearrangement : c.247-353:CYHR1_c.1826_RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (CYHR1-RECQL4)	60429	NA	0	22	32	22
P-0008340-T01-IM5	SOMATIC	DDR2	FAM5C	1	1	162749924	190219095	Exon 18 of DDR2(+)	Intron of FAM5C(-): 15Kb after exon 4	GRCh37	DUPLICATION	DDR2 (NM_006182) - FAM5C (NM_199051) Rearrangement : c.2456:DDR2_c.618+14900:FAM5Cdup	PRECISE		MANUAL_OK	5to3	-	27469171	NA	0	57	75	55
P-0009814-T01-IM5	SOMATIC	EIF4A2	BCL6	3	3	186501505	187462743	Intron of EIF4A2(+): 77bp after exon 1	5-UTR of BCL6(-): 11Kb before coding start	GRCh37	INVERSION	EIF4A2 (NM_001967) - BCL6 (NM_001706) rearrangement : c.29+77:EIF4A2_c.-50+455:BCL6inv	PRECISE		MANUAL_OK	3to3	Transcript fusion (EIF4A2-BCL6)	961238	NA	0	70	66	65
P-0008140-T01-IM5	SOMATIC	SND1	BRAF	7	7	127357492	140489439	Intron of SND1(+): 4Kb before exon 10	Intron of BRAF(-): 2Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-9 fused with BRAF exons 9-18) :  c.1039-3849:SND1_c.1141-2055:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13131947	NA	0	102	84	172
P-0006360-T01-IM5	SOMATIC	GDPD4	PAK1	11	11	76973923	77036335	Intron of GDPD4(-): 4Kb before exon 10	Intron of PAK1(-): 38bp after exon 15	GRCh37	DELETION	PAK1 (NM_002576) - GDPD4 (NM_182833) rearrangement: c.1552-1930:PAK1_ c.708-4336:GDPD4del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (PAK1-GDPD4)	62412	NA	0	22	16	21
P-0005309-T01-IM5	SOMATIC	TP53	TP53	17	17	7573939	7574504	Exon 10 of TP53(-)	Intron of TP53(-): 471bp before exon 10	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.994-471_1088inv	IMPRECISE		MANUAL_OK	5to5	Antisense fusion	565	NA	0	18	0	19
P-0008429-T02-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67585270	67591174	Intron of PIK3R1(+): 691bp after exon 1	Intron of PIK3R1(+): 22bp after exon 7	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement : c.917-2817_1745+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons: out of frame	5904	NA	0	34	44	34
P-0009482-T01-IM5	SOMATIC	GFRA1	CDKN2A	10	9	117963422	21994233	Intron of GFRA1(-): 8Kb after exon 5	Exon 1 of CDKN2A(-)	GRCh37	TRANSLOCATION	GFRA1 (NM_005264) - CDKN2Ap14ARF (NM_058195) rearrangement: t(9;10)(p21.3;q25.3)(chr9:g.21994233::chr10:g.117963422)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	15	14	15
P-0009482-T01-IM5	SOMATIC	ANKRD11	DLAT	16	11	89350623	111905299	Exon 9 of ANKRD11(-)	Intron of DLAT(+): 1Kb after exon 5	GRCh37	TRANSLOCATION	DLAT (NM_001931) - ANKRD11 (NM_013275) rearrangement: t(11;16)(q23.1;q24.3)(chr11:g.111905299::chr16:g.89350623)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	70	73	42
P-0005889-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49420033	49424108	Exon 48 of MLL2(-)	Exon 42 of MLL2(-)	GRCh37	INVERSION	MLL2 (NM_003482) Rearrangement :  c.15716_13954inv	PRECISE		MANUAL_OK	3to3	-	4075	NA	0	70	65	70
P-0008102-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29684432	128649909	Intron of EWSR1(+): 163bp before exon 7	Intron of FLI1(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - FLI1 (NM_002017) fusion (EWSR1 exons 1-7 fused with FLI1 exons 5-9) : t(11;22)(q24.3;q12.2)(chr11:g.128649909::chr22:g.29684432)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	69	36	67
P-0009449-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55208308	55223310	Intron of EGFR(+): 2Kb before exon 2	Intron of EGFR(+): 213bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-1671_890-213del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	15002	NA	0	19	32	19
P-0009449-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268107	55270769	Intron of EGFR(+): 1bp after exon 24	Intron of EGFR(+): 451bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2946+1_3271+451del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	2662	NA	0	9	14	9
P-0005518-T01-IM5	SOMATIC	POLE	POLE	12	12	133226407	133227215	Exon 30 of POLE(-)	Intron of POLE(-): 740bp before exon 30	GRCh37	DELETION	POLE (NM_006231) Rearrangement :  c.3651_3583-740del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	808	NA	0	17	12	15
P-0006787-T01-IM5	SOMATIC	MET	ST7	7	7	116399591	116626286	Intron of MET(+): 47bp after exon 10	Intron of ST7(+): 33Kb after exon 1	GRCh37	DUPLICATION	ST7 (NM_021908) - MET (NM_000245)  rearrangement: c.151+32541:ST7_c.2364+47:METdup.	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (ST7-MET)	226695	NA	0	9	26	9
P-0009111-T01-IM5	SOMATIC	MIR548H2	CDKN2Ap14ARF	9	9	21124920	21974825	5-UTR of MIR548H2(+): 8Kb before coding start	Intron of CDKN2Ap14ARF(-): 3Kb before exon 2	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement: chr9:g.21124920_c.194-3618:CDKN2Ap14ARFinv	PRECISE		MANUAL_OK	3to3	-	849905	NA	0	8	10	8
P-0009111-T01-IM5	SOMATIC	MIR548H2	CDKN2Ap16INK4A	9	9	21124920	21974825	5-UTR of MIR548H2(+): 8Kb before coding start	Exon 1 of CDKN2Ap16INK4A(-)	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: chr9:g.21124920_c.2:CDKN2Ap16INK4Ainv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MIR548H2-CDKN2Ap16INK4A)	849905	NA	0	8	10	8
P-0007136-T01-IM5	SOMATIC	ASXL1	DNMT3B	20	20	31021147	31397730	Exon 11 of ASXL1(+)	IGR: 569bp after DNMT3B(+)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement : c.1146_chr20:g.31397730del	PRECISE		MANUAL_OK	3to5	-	376583	NA	0	32	55	32
P-0009116-T01-IM5	SOMATIC	TFE3	YAP1	X	11	48892139	101984178	Intron of TFE3(-): 373bp before exon 6	Intron of YAP1(+): 697bp before exon 2	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) - TFE3 (NM_006521) fusion (YAP1 exon 1 fused in frame with TFE3 exons 6-10): t(11;X)(q22.1;p11.23)(chr11:g.101984178::chrX:g.48892139)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (YAP1-TFE3)	0	NA	0	55	36	54
P-0005058-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41264418	41266589	5-UTR of CTNNB1(+): 1Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-1094_c.386del.	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2171	NA	0	6	7	6
P-0009065-T01-IM5	SOMATIC	RHPN1	RECQL4	8	8	144456897	145739813	Intron of RHPN1(+): 826bp before exon 2	Intron of RECQL4(-): 13bp after exon 10	GRCh37	INVERSION	RECQL4 (NM_004260) - RHPN1 (NM_052924) rearrangement : c.1704+13:RECQL4_c.61-826:RHPN1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (RECQL4-RHPN1)	1282916	NA	0	9	16	9
P-0005930-T01-IM5	SOMATIC	CIC	CIC	19	19	42794832	42797736	Exon 10 of CIC(+)	Intron of CIC(+): 8bp before exon 16	GRCh37	DELETION	CIC  (NM_015125) Rearrangement :  c.1912_3796-8del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2904	NA	0	44	94	41
P-0005821-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27082230	27101580	Intron of ARID1A(+): 5Kb before exon 5	Exon 18 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement event : c.1921-5117_4862inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	19350	NA	0	54	59	52
P-0009147-T01-IM5	SOMATIC	MALT1	PIGN	18	18	56367732	59652061	Exon 4 of MALT1(+)	IGR: 59Kb before PIGN(-)	GRCh37	INVERSION	MALT1 (NM_006785) rearrangement: c.558_chr18:g.59652061inv (Note) Note: The MALT1 (NM_006785) rearrangement is an inversion of exons 4-17. The functional significance is undetermined.	PRECISE		MANUAL_OK	5to5	-	3284329	NA	0	26	29	25
P-0009147-T01-IM5	SOMATIC	ANXA6	NSD1	5	5	150541610	176562328	IGR: 4Kb after ANXA6(-)	Exon 2 of NSD1(+)	GRCh37	DUPLICATION	NSD1 (NM_022455) rearrangement: chr5:g.150541610_c.224:NSD1dup (Note) Note: The NSD1 (NM_022455) rearrangement is a duplication (26020718 bp) that includes exons 1-2 of NSD1. One of the breakpoints is within exon 2 of NSD1. The functional significance is undetermined.	PRECISE		MANUAL_OK	5to3	-	26020718	NA	0	18	22	16
P-0008291-T01-IM5	SOMATIC	SLC1A2	MET	11	7	35443621	116411931	Promoter of SLC1A2(-): 3Kb from tx start	Exon 14 of MET(+)	GRCh37	TRANSLOCATION	SLC1A2 (NM_004171) - MET (NM_000245) rearrangement: t(7;11)(q34;p13)(chr7:g.116411931::chr111:g.35443621)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (SLC1A2-MET)	0	NA	0	12	12	12
P-0004778-T01-IM5	SOMATIC	TRAF7	TRAF7	16	16	2226048	2226606	Intron of TRAF7(+): 2bp before exon 19	3-UTR of TRAF7(+): 31bp after coding stop	GRCh37	DELETION	TRAF7(NM_032271) Rearrangement : c.1747-2_*31del	PRECISE		MANUAL_OK	3to5	-	558	NA	0	10	19	9
P-0008798-T01-IM5	SOMATIC	TP63	TP63	3	3	189588745	189607232	Intron of TP63(+): 2Kb after exon 9	Exon 12 of TP63(+)	GRCh37	DUPLICATION	TP63 (NM_003722) rearrangement : c.1212+1550_1611dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	18487	NA	0	45	63	45
P-0004815-T01-IM5	SOMATIC	SLC12A6	MDM2	15	12	34539975	69233428	Intron of SLC12A6(-): 2Kb before exon 13	Exon 11 of MDM2(+)	GRCh37	TRANSLOCATION	SLC12A6 (NM_133647) - MDM2 (NM_002392) rearrangement: t(15;12)(q14;q15)(chr15:g.34539975::chr12:g.69233428)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (SLC12A6-MDM2)	0	NA	0	102	38	156
P-0004815-T01-IM5	SOMATIC	TP63	SPEN	3	1	189533530	16247389	Intron of TP63(+): 7Kb after exon 4	Exon 9 of SPEN(+)	GRCh37	TRANSLOCATION	TP63 (NM_00372 ) - SPEN (NM_015001) rearrangement: t(3;1)(q28;p36.13)(chr3:g.189533530::chr1:g.16247389)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (TP63-SPEN)	0	NA	0	93	24	89
P-0008650-T02-IM5	SOMATIC	INHBA	LOC285954	7	7	41729444	41742995	Exon 3 of INHBA(-)	5-UTR of LOC285954(+): 10Kb before coding start	GRCh37	DELETION	INHBA (NM_002192) rearrangement: c.-536_c.1085del	PRECISE		MANUAL_OK	3to5	-	13551	NA	0	57	53	55
P-0006077-T01-IM5	SOMATIC	STAT5A	STAT5A	17	17	40453335	40459826	Exon 10 of STAT5A(+)	Intron of STAT5A(+): 85bp after exon 16	GRCh37	INVERSION	STAT5A (NM_003152) rearrangement : c.1032_1906+85inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	6491	NA	0	102	123	168
P-0006077-T01-IM5	SOMATIC	NOTCH1	NOTCH1	9	9	139416981	139418048	Intron of NOTCH1(-): 321bp after exon 4	Intron of NOTCH1(-): 121bp after exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement : c.403+121_742+321del	IMPRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	1067	NA	0	74	0	61
P-0009082-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868112	42872956	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-2840:TMPRSS2_c.40-50568:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3004844	NA	0	102	93	115
P-0009648-T01-IM5	SOMATIC	MUC16	RARA	19	17	9019793	38512460	Intron of MUC16(-): 158bp before exon 22	Exon 9 of RARA(+)	GRCh37	TRANSLOCATION	RARA (NM_000964) - MUC16 (NM_024690) rearrangement: t(17;19)(q21.2;p13.2)(chr17:g.38512460::chr19:g.9019793)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (RARA-MUC16)	0	NA	0	35	18	35
P-0008098-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140482187	140567810	Intron of BRAF(-): 634bp after exon 10	Intron of BRAF(-): 18Kb before exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement : c.139-17798_1314+634del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons: in frame	85623	NA	0	102	106	205
P-0006167-T01-IM5	SOMATIC	ZFHX3	CNTNAP4	16	16	72821147	76628585	Exon 10 of ZFHX3(-)	IGR: 35Kb after CNTNAP4(+)	GRCh37	INVERSION	ZFHX3 (NM_006885) Rearrangement :  c.11028:ZFHX3_chr16:g.76628585inv	PRECISE		MANUAL_OK	3to3	-	3807438	NA	0	21	29	20
P-0005454-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39856694	42872059	Intron of ERG(-): 14Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion(TMPRSS2 exon 1 fused to ERG exon2 ) :  c.56-1943:TMPRSS2_c.18+13593:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015365	NA	0	52	62	51
P-0008879-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870075	42869242	Intron of ERG(-): 212bp after exon 1	Intron of TMPRSS2(-): 804bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+804:TMPRSS2_c.18+212:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2999167	NA	0	11	18	11
P-0009343-T01-IM5	SOMATIC	ALK	EML4	2	2	29446521	42506897	Intron of ALK(-): 127bp before exon 20	Intron of EML4(+): 1Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.668-1093:EML4_c.3173-127:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13060376	NA	0	51	64	31
P-0008266-T01-IM5	SOMATIC	MANBAL	SRC	20	20	35911979	36029933	IGR: 6Kb before MANBAL(+)	Intron of SRC(+): 72bp before exon 11	GRCh37	INVERSION	SRC (NM_198291) rearrangement: chr3.g.53498367_c.1040-72:SRCinv	PRECISE		MANUAL_OK	5to5	-	117954	NA	0	32	34	32
P-0008266-T01-IM5	SOMATIC	BCOR	DDX3X	X	X	39931726	41228047	Exon 4 of BCOR(-)	IGR: 35Kb before DDX3X(+)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.2873:BCOR_ chrX:g.41228047del	PRECISE		MANUAL_OK	3to5	-	1296321	NA	0	58	59	51
P-0008322-T01-IM5	SOMATIC	ALK	LOC1720	2	2	29447302	82835552	Intron of ALK(-): 908bp before exon 20	IGR: 248Kb before LOC1720(+)	GRCh37	INVERSION	ALK (NM_004304) rearrangement : c.3173-908:ALK_chr2:g.82835552inv	PRECISE		MANUAL_OK	3to3	-	53388250	NA	0	102	99	141
P-0005136-T01-IM5	SOMATIC	TFE3	SFPQ	X	1	48895977	35654305	Intron of TFE3(-): 10bp before exon 4	Intron of SFPQ(-): 299bp after exon 6	GRCh37	TRANSLOCATION	SFPQ (NM_005066) - TFE3 (NM_006521)  fusion (SFPQ exons 1-6 fuses with TFE3  exons 4-10): t(1;X)(p34.3;p11.23)(chr1:g.35654305::chrX:g.48895977)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SFPQ-TFE3)	0	NA	0	52	29	41
P-0006792-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684486	32416863	Intron of EWSR1(+): 109bp before exon 7	Intron of WT1(-): 940bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 with WT1 exons 8-10) : t(22;11)(q12.2;p13)(chr22:g.29684486::chr11g.32416863)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	57	43	57
P-0009624-T01-IM5	SOMATIC	MAPK3	TP53TG3B	16	16	30128535	32609076	Exon 6 of MAPK3(-)	IGR: 76Kb before TP53TG3B(-)	GRCh37	INVERSION	MAPK3 (NM_002746) Rearrangement : c.847_chr16:g.32609076inv	PRECISE		MANUAL_OK	3to3	-	2480541	NA	0	96	79	95
P-0003913-T01-IM3	SOMATIC	ALK	EML4	2	2	29447211	42523334	Intron of ALK(-): 817bp before exon 20	Intron of EML4(+): 678bp after exon 12	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13076123	NA	0	102	91	133
P-0005895-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42860977	42879628	Intron of TMPRSS2(-): 457bp after exon 4	Intron of TMPRSS2(-): 249bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+249_c.436+457del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	18651	NA	0	23	38	22
P-0003762-T02-IM5	SOMATIC	CDK12	ADCY9	17	16	37646665	4033430	Intron of CDK12(+): 145bp before exon 3	Exon 7 of ADCY9(-)	GRCh37	TRANSLOCATION	ADCY9 (NM_001116) - CDK12 (NM_016507) rearrangement: t(16;17)(p13.3;q12)(chr16:g.4033430::chr17:g.37646665)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (ADCY9-CDK12)	0	NA	0	21	10	20
P-0003762-T02-IM5	SOMATIC	KDM6A	KDM6A	X	X	44787359	44833834	Intron of KDM6A(+): 33Kb before exon 3	Intron of KDM6A(+): 77bp before exon 4	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.226-33170_c.335-77del.	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	46475	NA	0	51	47	48
P-0006963-T01-IM5	SOMATIC	TERT	TERT	5	5	1295363	1296461	Promoter of TERT(-): 201bp from tx start	Promoter of TERT(-): 1Kb from tx start	GRCh37	DELETION	TERT (NM_198253) rearrangement : c.-1357_-259del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1098	NA	0	19	23	19
P-0006815-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40025577	42875044	5-UTR of ERG(-): 78Kb before coding start	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exon 2) :  c.55+4833:TMPRSS2_c.-150+8005:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2849467	NA	0	34	35	33
P-0008352-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685587	128658456	Intron of EWSR1(+): 812bp after exon 7	Intron of FLI1(+): 7Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-7 with FLI1 exons 6-9)  : t(22;11)(22q12.2;11q24.3)(chr22:g.29685587  ::chr11:g.128658456)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	19	19	19
P-0008956-T01-IM5	SOMATIC	HS3ST5	ROS1	6	6	115008053	117708032	IGR: 631Kb before HS3ST5(-)	Intron of ROS1(-): 20bp after exon 14	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.2125+20_chr6:g.115008053del	PRECISE		MANUAL_OK	3to5	-	2699979	NA	0	37	41	37
P-0005993-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37627605	37661216	Exon 2 of CDK12(+)	Intron of CDK12(+): 4Kb after exon 6	GRCh37	DELETION	CDK12 (NM_016507) Rearrangement: c.1520_c.2609+3524del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	33611	NA	0	102	120	318
P-0008441-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39886960	42868117	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1612:TMPRSS2_c.39+60626:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2981157	NA	0	100	63	96
P-0007897-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55197429	55222279	Intron of EGFR(+): 13Kb before exon 2	Intron of EGFR(+): 434bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement : c.89-12550_2469+470inv	PRECISE		MANUAL_OK	5to5	-	24850	NA	0	102	276	360
P-0009596-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52605733	52692240	Intron of PBRM1(-): 5Kb after exon 23	Exon 6 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.620_c.3616+4824dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	86507	NA	0	22	35	22
P-0006057-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875091	42872619	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Rearrangement: c.40-57547:ERG_c.56-2503:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2997528	NA	0	10	28	10
P-0006823-T01-IM5	SOMATIC	RB1	RB1	13	13	48928926	48941497	Intron of RB1(+): 5Kb before exon 7	Intron of RB1(+): 133bp before exon 10	GRCh37	DELETION	RB1 (NM_000321) rearrangement :  c.608-5227_940-133del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	12571	NA	0	7	6	6
P-0006138-T01-IM5	SOMATIC	IDH2	CHN1	15	2	90627553	175847561	Exon 11 of IDH2(-)	Intron of CHN1(-): 22Kb after exon 2	GRCh37	TRANSLOCATION	CHN1(NM_001822) - IDH2 (NM_002168) rearrangement: t(2;15)(q31.1;q26)(chr2:g.175847561::chr15:g.90627553)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CHN1-IDH2)	0	NA	0	5	14	5
P-0006308-T01-IM5	SOMATIC	ERBB3	ERBB3	12	12	56488034	56489686	Intron of ERBB3(+): 61bp after exon 14	Intron of ERBB3(+): 96bp after exon 17	GRCh37	DELETION	ERBB3 (NM_001982) Rearrangement :  c.1704+61_2055+96del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	1652	NA	0	35	31	32
P-0005615-T02-IM5	SOMATIC	ERCC2	ST3GAL3	19	1	45860754	44301803	Exon 14 of ERCC2(-)	Intron of ST3GAL3(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) rearrangement: t(19;1)(q13.32;p34.1)(chr19:g.45860754::chr1:g.44301803)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	89	54	87
P-0005140-T01-IM5	SOMATIC	FAM13C	FGFR2	10	10	61197618	123241072	IGR: 192Kb before FAM13C(-)	Intron of FGFR2(-): 2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2302-1537:FGFR2_chr10:g.61197618inv	PRECISE		MANUAL_OK	5to5	-	62043454	NA	0	37	10	34
P-0005034-T01-IM5	SOMATIC	NF1	SP2	17	17	29676226	45958328	Exon 48 of NF1(+)	IGR: 15Kb before SP2(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7278:NF1_chr17:g.45958328del	PRECISE		MANUAL_OK	3to5	-	16282102	NA	0	49	48	46
P-0005034-T01-IM5	SOMATIC	NF1	SP2	17	17	29676230	45958318	Exon 48 of NF1(+)	IGR: 15Kb before SP2(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement : c.7282::NF1_chr17:g.45958318dup	PRECISE		MANUAL_OK	5to3	-	16282088	NA	0	27	52	27
P-0005034-T01-IM5	SOMATIC	MYH14	POLD1	19	19	50806701	50906311	Intron of MYH14(+): 2Kb after exon 39	Exon 9 of POLD1(+)	GRCh37	INVERSION	MYH14 (NM_001145809) - POLD1 (NM_002691) rearrangement : c.5678+1575:MYH14_c.972:POLD1inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	99610	NA	0	10	18	10
P-0007338-T01-IM5	SOMATIC	STK11	REEP6	19	19	1219408	1495314	Exon 3 of STK11(+)	Exon 2 of REEP6(+)	GRCh37	DELETION	STK11 (NM_000455) - REEP6 (NM_138393) rearrangement : c.460:STK11_c.137:REEP6del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (STK11-REEP6)	275906	NA	0	25	36	25
P-0008104-T01-IM5	SOMATIC	SRC	LBP	20	20	35971263	36971011	Promoter of SRC(+): 2Kb from tx start	IGR: 4Kb before LBP(+)	GRCh37	DELETION	SRC (NM_198291) rearrangement : c.-3642_chr20:g.36971011del	PRECISE		MANUAL_OK	3to5	-	999748	NA	0	48	45	48
P-0005711-T01-IM5	SOMATIC	DIS3	DAOA	13	13	73333972	105233055	Exon 21 of DIS3(-)	IGR: 885Kb before DAOA(+)	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement (31899083 bp) : c.2838_chr13:g.105233055inv	PRECISE		MANUAL_OK	5to5	-	31899083	NA	0	17	20	17
P-0009872-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41266682	41267445	Exon 4 of CTNNB1(+)	Intron of CTNNB1(+): 93bp after exon 6	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement :  c.479_936+93del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	763	NA	2	22	0	21
P-0006243-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57488431	57493365	Exon 7 of NAB2(+)	Intron of STAT6(-): 142bp before exon 16	GRCh37	INVERSION	NAB2(NM_005967) -STAT6(NM_003153) Fusion ( NAB2 exons 1 to 7 fused with STAT6 exon 16 to 22) :  c.1505:NAB2_c.1745-142:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	4934	NA	0	102	102	139
P-0004902-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739729	1808906	Intron of TACC3(+): 300bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 with TACC3 exons 11-16) : c.2338:FGFR3_:c.1941+300TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69177	NA	0	38	53	38
P-0009100-T01-IM5	SOMATIC	NUP93	NUP93	16	16	56866025	56871520	Intron of NUP93(+): 106bp after exon 11	Exon 18 of NUP93(+)	GRCh37	DELETION	NUP93 (NM_014669) rearrangement: c.1251+106_c.1900del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5495	NA	0	76	75	74
P-0006414-T01-IM5	SOMATIC	HIST1H3G	HIST1H3G	6	6	26269952	26271426	IGR: 1Kb before HIST1H3G(-)	Exon 1 of HIST1H3G(-)	GRCh37	DELETION	HIST1H3G (NM_003534) Rearrangement :  chr6:g.26269952_c.187del	PRECISE		MANUAL_OK	3to5	-	1474	NA	0	57	66	55
P-0009480-T01-IM5	SOMATIC	BBS9	IKZF1	7	7	33241908	50467581	Intron of BBS9(+): 25Kb after exon 5	Intron of IKZF1(+): 35bp before exon 8	GRCh37	DELETION	BBS9 (NM_198428) - IKZF1 (NM_006060) rearrangement: c.442+24705:BBS9_c.855-35:IKZF1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (BBS9-IKZF1)	17225673	NA	0	19	22	18
P-0007117-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683519	32414710	Intron of EWSR1(+): 396bp after exon 6	Intron of WT1(-): 409bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-8 with WT1 exons 8-10): t(22;11)(q12.2;p13)(chr22:g.29683519::chr11g.32414710)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	23	37	23
P-0006776-T01-IM5	SOMATIC	MGA	MESP2	15	15	42028387	90306603	Exon 13 of MGA(+)	IGR: 13Kb before MESP2(+)	GRCh37	DUPLICATION	MGA (NM_001164273) rearrangement: c.3925:MGA_chr15:g.90306603dup	PRECISE		MANUAL_OK	5to3	-	48278216	NA	0	54	55	44
P-0006776-T01-IM5	SOMATIC	ALK	DYSF	2	2	29447418	71808849	Intron of ALK(-): 909bp after exon 19	Intron of DYSF(+): 7Kb after exon 30	GRCh37	DUPLICATION	ALK (NM_004304) - DYSF (NM_001130987) rearrangement: c.3172+909:ALK_c.3402+7348:DYSFdup	PRECISE		MANUAL_OK	5to3	Antisense fusion	42361431	NA	0	18	31	17
P-0006882-T01-IM5	SOMATIC	PTPRS	ARHGEF18	19	19	5231376	7498434	Exon 14 of PTPRS(-)	5-UTR of ARHGEF18(+): 7Kb before coding start	GRCh37	INVERSION	ARHGEF18 (NM_015318) - PTPRS (NM_002850) rearrangement :  c.-71-6796:ARHGEF18_c.2100:PTPRSinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ARHGEF18-PTPRS)	2267058	NA	0	15	15	9
P-0006882-T01-IM5	SOMATIC	PAX8	PAX8	2	2	113985972	114001483	Intron of PAX8(-): 1Kb before exon 10	Intron of PAX8(-): 521bp after exon 4	GRCh37	DELETION	PAX8 (NM_003466) rearrangement :  c.1088-1139_c.389+521del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons: out of frame	15511	NA	0	21	25	19
P-0007001-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55170848	55223445	Intron of EGFR(+): 39Kb before exon 2	Intron of EGFR(+): 78bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.89-39131_890-78del	IMPRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	52597	NA	0	48	0	45
P-0006619-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862160	42867571	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-11) : c.127-1066:TMPRSS2_c.40-44616:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3005411	NA	0	10	13	10
P-0008139-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39850842	42867120	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 615bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-11) : c.127-615:TMPRSS2_c.40-33298:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3016278	NA	0	22	27	20
P-0008778-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11143015	11144726	Intron of SMARCA4(+): 951bp before exon 25	Intron of SMARCA4(+): 73bp before exon 26	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3547-951_c.3874-73del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	1711	NA	0	20	28	20
P-0005299-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55188928	55222616	Intron of EGFR(+): 21Kb before exon 2	Intron of EGFR(+): 771bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-21051_c.889+771del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	33688	NA	0	19	26	19
P-0007888-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151867954	151878039	Intron of MLL3(-): 395bp after exon 40	Exon 36 of MLL3(-)	GRCh37	INVERSION	MLL3 (NM_170606) rearrangement : c.6906:MLL3_9453+395inv	PRECISE		MANUAL_OK	3to3	-	10085	NA	0	20	21	18
P-0006235-T01-IM5	SOMATIC	ROCK1	FGFR2	18	10	18680051	123240133	Intron of ROCK1(-): 11Kb after exon 1	Intron of FGFR2(-): 598bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ROCK1 (NM_005406) rearrangement: t(10;18)(q26.13;q11.1)(chr10:g.123240133::chr18:g18680051)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-ROCK1)	0	NA	1	102	39	106
P-0005800-T01-IM5	SOMATIC	PPM1D	PPM1D	17	17	58677678	58678530	5-UTR of PPM1D(+): 98bp before coding start	Intron of PPM1D(+): 283bp after exon 1	GRCh37	DUPLICATION	PPM1D (NM_003620) rearrangement: c.-98_c.472+283dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	852	NA	0	25	31	25
P-0005800-T01-IM5	SOMATIC	PPM1D	PPM1D	17	17	58677910	58679068	Exon 1 of PPM1D(+)	Intron of PPM1D(+): 821bp after exon 1	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: c.135_c.472+821del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1158	NA	0	77	96	77
P-0005800-T01-IM5	SOMATIC	PTPRD	PTPRD	9	9	8422478	8437218	Intron of PTPRD(-): 14Kb after exon 35	Exon 17 of PTPRD(-)	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.3989-529_c.4086+14114dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	14740	NA	0	19	34	19
P-0009463-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67591217	67596244	Intron of PIK3R1(+): 31bp before exon 8	3-UTR of PIK3R1(+): 3Kb after coding stop	GRCh37	DELETION	PIK3R1 (NM_181523) Rearrangement :  c.1746-31_*2815del	PRECISE		MANUAL_OK	3to5	-	5027	NA	0	6	9	6
P-0009463-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21974794	21978614	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 7Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement :  c.-3788_c.33del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3820	NA	0	34	36	32
P-0005239-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11137133	11148878	Intron of SMARCA4(+): 111bp after exon 22	Intron of SMARCA4(+): 1Kb before exon 30	GRCh37	DELETION	SMARCA4 (NM_003072)  Rearrangement :  c.3215+111_4170+3070del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: out of frame	11745	NA	0	5	11	5
P-0006793-T01-IM5	SOMATIC	TP53	TP53	17	17	7579438	7581047	Exon 4 of TP53(-)	5-UTR of TP53(-): 1Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-1107_c.249del.	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1609	NA	0	20	44	19
P-0004605-T01-IM5	SOMATIC	BRMS1L	RB1	14	13	36312640	48877982	Intron of BRMS1L(+): 9Kb after exon 4	5-UTR of RB1(+): 67bp before coding start	GRCh37	TRANSLOCATION	RB1(NM_000321) - BRMS1L (NM_032352)   Rearrangement : t(14;13)(14q13.2;13q14.2)(chr14:g.36312640::chr13:g.48877982)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	30	14	22
P-0003705-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156104642	156845433	Exon 4 of LMNA(+)	Exon 12 of NTRK1(+)	GRCh37	DELETION	c.686:LMNA_c.1476:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LMNA-NTRK1)	740791	NA	0	8	12	11
P-0004107-T01-IM5	SOMATIC	HIST1H1E	HIST1H2BD	6	6	26155620	26158407	Promoter of HIST1H1E(+): 939bp from tx start	Exon 1 of HIST1H2BD(+)	GRCh37	DELETION	HIST1H1E (NM_005321)  - HIST1H2BD (NM_021063) rearrangement: c.-2778:HIST1H1E _c.10:HIST1H2BDdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (HIST1H1E-HIST1H2BD)	2787	NA	0	37	61	51
P-0003867-T01-IM5	SOMATIC	TP53	TP53	17	17	7579887	7580988	Exon 2 of TP53(-)	5-UTR of TP53(-): 1Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.-28-1048_c.26_:TP53dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1101	NA	0	69	99	81
P-0002738-T02-IM5	SOMATIC	FOXP1	FOXP1	3	3	71007550	71130524	3-UTR of FOXP1(-): 848bp after coding stop	Intron of FOXP1(-): 28Kb before exon 8	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.*848_c.283-27600del	PRECISE		MANUAL_OK	3to5	-	122974	NA	0	15	12	14
P-0001849-T01-IM3	SOMATIC	RAD52	RAD52	12	12	1025631	1044569	Exon 9 of RAD52(-)	5-UTR of RAD52(-): 2Kb before coding start	GRCh37	DELETION	RAD52 (NM_134424) intragenic deletion: c.-18-2327_c.744del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	18938	NA	0	6	31	12
P-0003207-T01-IM5	SOMATIC	ROS1	TPM3	6	1	117642993	154135010	Intron of ROS1(-): 436bp before exon 35	Intron of TPM3(-): 3Kb before exon 8	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TPM3-ROS1)	0	NA	0	9	24	0
P-0000047-T01-IM3	SOMATIC	ROS1	TMEM181	6	6	117674261	159055858	Exon 26 of ROS1(-)	3-UTR of TMEM181(+): 3Kb after coding stop	GRCh37	DELETION		35332045-N_bc40		AUTO_OK	3to5	-	41381597	NA	0	19	68	52
P-0003344-T01-IM5	SOMATIC	FGFR3	ST7L	4	1	1808667	113110418	Intron of FGFR3(+): 6bp after exon 17	Intron of ST7L(-): 9Kb after exon 11	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	-	0	NA	0	38	58	0
P-0003226-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880933	42874729	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2993796	NA	0	17	62	60
P-0000208-T01-IM3	SOMATIC	KIF5B	RET	10	10	32313935	43611647	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 385bp before exon 12	GRCh37	INVERSION	RET (NM_020975) Inversion (c.2137-385_KIF5B:c.1726-1971inv)	PRECISE		AUTO_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297712	NA	0	77	65	77
P-0000644-T01-IM3	SOMATIC	FGFR2	AHCYL1	10	1	123239745	110529335	Intron of FGFR2(-): 210bp before exon 18	Intron of AHCYL1(+): 2Kb after exon 1	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (AHCYL1-FGFR2)	0	NA	0	23	39	32
P-0000479-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39820000	42872680	Intron of ERG(-): 2Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3052680	NA	0	5	12	5
P-0001635-T01-IM3	SOMATIC	ARID2	ARID2	12	12	46123743	46142178	Intron of ARID2(+): 32bp after exon 1	Intron of ARID2(+): 17Kb after exon 3	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	18435	NA	0	44	73	49
P-0000913-T02-IM5	SOMATIC	BRAF	AGK	7	7	140496386	141269299	Intron of BRAF(-): 2Kb before exon 8	Intron of AGK(+): 14Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) Fusion (AGK exon 2   fused with BRAF exon 8) : c.101+13932:AGK _c.981-2119:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGK-BRAF)	772913	NA	0	57	59	77
P-0001021-T01-IM3	SOMATIC	EWSR1	GAS2L1	22	22	29689439	29706086	Intron of EWSR1(+): 844bp after exon 10	Intron of GAS2L1(+): 343bp before exon 3	GRCh37	DELETION	EWSR1 (NM_013986) - GAS2L1 (NM_006478) Deletion:  c.1179+844_c.634-343del	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-GAS2L1)	16647	NA	0	14	25	7
P-0001373-T01-IM3	SOMATIC	SMARCA4	LPAR2	19	19	11106969	19738624	Exon 9 of SMARCA4(+)	5-UTR of LPAR2(-): 531bp before coding start	GRCh37	INVERSION	None	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (SMARCA4-LPAR2)	8631655	NA	0	75	79	75
P-0001373-T01-IM3	SOMATIC	RYBP	RYBP	3	3	72428284	72495750	Exon 3 of RYBP(-)	Exon 1 of RYBP(-)	GRCh37	INVERSION		PRECISE		AUTO_OK	5to5	Antisense fusion	67466	NA	0	6	26	6
P-0001373-T01-IM3	SOMATIC	RYBP	RYBP	3	3	72441835	72495751	Intron of RYBP(-): 13Kb before exon 2	Exon 1 of RYBP(-)	GRCh37	DELETION	None	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	53916	NA	0	6	0	6
P-0004671-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29688074	32415636	Intron of EWSR1(+): 52bp before exon 9	Intron of WT1(-): 1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-10 with WT1 exons 8-10): t(11;22)(11p13;22q12.2)(chr11:g.32415636::chr22:g.29688074)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	14	17	13
P-0002649-T01-IM3	SOMATIC	HDAC7	MLL2	12	12	48182044	49437396	Intron of HDAC7(-): 97bp before exon 20	Intron of MLL2(-): 22bp after exon 23	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (MLL2-HDAC7)	1255352	NA	0	7	18	7
P-0002382-T01-IM3	SOMATIC	PTCH1	C9orf130	9	9	98244574	98456521	Intron of PTCH1(-): 89bp before exon 4	IGR: 112Kb before C9orf130(-)	GRCh37	DELETION	PTCH1 (NM_000264) deletion (211947bp) :  PTCH1:c.585-89_chr9:g.98456521del	PRECISE		AUTO_OK	3to5	-	211947	NA	0	8	14	8
P-0003758-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39902170	42873606	Intron of ERG(-): 45Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	c.56-3490:TMPRSS2_c.39+45416:ERGdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2971436	NA	0	5	0	8
P-0002880-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39859355	42867024	Intron of ERG(-): 11Kb after exon 1	Intron of TMPRSS2(-): 519bp before exon 3	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3007669	NA	0	36	63	39
P-0003334-T02-IM5	SOMATIC	MAP2K4	COX19	17	7	11935583	1005376	Intron of MAP2K4(+): 11Kb after exon 1	3-UTR of COX19(-): 4Kb after coding stop	GRCh37	TRANSLOCATION	MAP2K4 (NM_003010) - COX19 (NM_001031617) translocation: t(17;7) (p12;p22.3) chr17:g.11935583::chr7:g.1005376	PRECISE		MANUAL_OK	3to3	-	0	NA	0	45	47	43
P-0004670-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27066074	27089712	Intron of ARID1A(+): 7Kb after exon 4	Exon 8 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1920+6791_c.2668del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	23638	NA	0	5	6	5
P-0002050-T01-IM3	SOMATIC	CREBBP	CREBBP	16	16	3820620	3877273	Exon 14 of CREBBP(-)	Intron of CREBBP(-): 16Kb before exon 3	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	56653	NA	0	57	92	69
P-0000888-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39835338	42868672	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion:  c.126+1374_c.19-17794del	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3033334	NA	0	46	54	47
P-0002397-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39800725	42877364	Intron of ERG(-): 5Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion :  c.55+2513:TMPRSS2_c.237-5242:ERGdel	PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3076639	NA	0	17	36	19
P-0002336-T01-IM3	SOMATIC	ARID2	ARID2	12	12	46231211	46233681	Intron of ARID2(+): 11bp after exon 9	Intron of ARID2(+): 402bp after exon 11	GRCh37	DUPLICATION	ARID2 (NM_152641) Duplication : c.1120+11_c.1498+402dup	PRECISE		AUTO_OK	5to3	Duplication of 2 exons: in frame	2470	NA	0	16	37	20
P-0001128-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39837782	42870060	Intron of ERG(-): 20Kb before exon 4	Exon 2 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3032278 bp):  c.112_c.19-20238del	PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (TMPRSS2-ERG)	3032278	NA	0	6	20	8
P-0002887-T01-IM3	SOMATIC	CASC3	BRCA1	17	17	38304199	41226404	Intron of CASC3(+): 6Kb after exon 3	Exon 13 of BRCA1(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (CASC3-BRCA1)	2922205	NA	0	11	22	11
P-0004354-T01-IM5	SOMATIC	NOTCH2	NOTCH2	1	1	120480048	120482069	Exon 21 of NOTCH2(-)	Intron of NOTCH2(-): 1Kb after exon 19	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement (2021bp): c.3183+1109_c.3379inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2021	NA	0	12	23	12
P-0004164-T01-IM5	SOMATIC	CEBPA	NELL1	19	11	33793263	20723042	Exon 1 of CEBPA(-)	Intron of NELL1(+): 23Kb after exon 2	GRCh37	TRANSLOCATION	EBPA (NM_004364) - NELL1 (NM_006157) rearrangement: t(11;19)(11p15.1;19q13.11)(chr11:g.20723042::chr19:g.33793263)	IMPRECISE		MANUAL_OK	5to3	Antisense fusion	0	NA	0	58	0	36
P-0003860-T01-IM5	SOMATIC	SRRM2	CREBBP	16	16	2816291	3779553	Exon 11 of SRRM2(+)	Exon 31 of CREBBP(-)	GRCh37	DELETION	SRRM2 (NM_016333) - CREBBP (NM_004380) rearrangement : c.5762:SRRM2_c.5495:CREBBPdel	PRECISE		MANUAL_OK	3to5	Antisense fusion	963262	NA	0	10	21	13
P-0004539-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867904	42876969	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fuses with ERG exons 2-10): c.55+2908:TMPRSS2_c.40-50360:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3009065	NA	0	45	50	45
P-0004539-T01-IM5	SOMATIC	TMPRSS2	ZNF295	21	21	42876881	43407557	Intron of TMPRSS2(-): 3Kb after exon 1	3-UTR of ZNF295(-): 3Kb after coding stop	GRCh37	INVERSION	TMPRSS2 (NM_001135099)  - ZNF295 (NM_020727) rearrangement (530676 bp) : c.55+2996_c.*3447:ZNF295inv	PRECISE		MANUAL_OK	3to3	-	530676	NA	0	13	32	13
P-0000569-T01-IM3	SOMATIC	ROS1	CD74	6	5	117647622	149784206	Intron of ROS1(-): 45bp before exon 33	Intron of CD74(-): 37bp after exon 6	GRCh37	TRANSLOCATION		IMPRECISE		AUTO_OK	5to3	Protein fusion: out of frame (ROS1-CD74)	0	NA	0	4	0	35
P-0004410-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098145	178102538	Intron of NFE2L2(-): 78bp before exon 3	Intron of NFE2L2(-): 4Kb before exon 2	GRCh37	DELETION	NFE2L2(NM_006164)  Rearrangement :  c.313-78_c.46-3539del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	4393	NA	0	26	21	22
P-0003852-T01-IM5	SOMATIC	ACAA1	MYD88	3	3	38168118	38181233	Exon 7 of ACAA1(-)	Intron of MYD88(+): 122bp before exon 2	GRCh37	INVERSION	ACAA1 (NM_001607) - MYD88 (NM_002468) rearrangement : c.700:ACAA1_c.368-122:MYD88inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (ACAA1-MYD88)	13115	NA	0	9	9	9
P-0002890-T01-IM3	SOMATIC	CXorf26	FGFR3	X	4	75468339	1803169	IGR: 76Kb before CXorf26(+)	Exon 5 of FGFR3(+)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	-	0	NA	0	40	53	40
P-0003099-T01-IM5	SOMATIC	NF2	HORMAD2	22	22	30060983	30569419	Exon 9 of NF2(+)	Intron of HORMAD2(+): 3Kb before exon 11	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Antisense fusion	508436	NA	0	38	53	99
P-0004079-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29688196	32415036	Intron of EWSR1(+): 38bp after exon 9	Intron of WT1(-): 735bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)- WT1 (NM_024426) Fusion (EWSR1 exon 11 fused with WT1 exon 8) : t(22;11) (q12.2;p13) (chr22:g.29688196::chr11:g.32415036)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	17	19	22
P-0004496-T01-IM5	SOMATIC	MAP3K14	TAC4	17	17	43344803	47960604	Exon 12 of MAP3K14(-)	IGR: 45Kb before TAC4(-)	GRCh37	INVERSION	MAP3K14 (NM_003954)  rearrangement : c.2295:MAP3K14_chr17:g.47960604inv	PRECISE		MANUAL_OK	3to3	-	4615801	NA	0	11	15	11
P-0004496-T01-IM5	SOMATIC	ZNF257	MAP3K14	19	17	22270191	43344878	Intron of ZNF257(+): 588bp before exon 4	Exon 12 of MAP3K14(-)	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) - ZNF257 (NM_033468) rearrangement : t(17;19)(17q21.31;19p12)(chr17:g.43344878::chr19:22270191)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (MAP3K14-ZNF257)	0	NA	0	8	10	8
P-0003819-T01-IM5	SOMATIC	SUFU	TRIM8	10	10	104386863	104409596	Intron of SUFU(+): 69bp before exon 11	Intron of TRIM8(+): 5Kb after exon 1	GRCh37	DUPLICATION	TRIM8 (NM_030912) - SUFU (NM_016169) rearrangement : c.570+4652:TRIM8_c.1297-69:SUFUdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (TRIM8-SUFU)	22733	NA	0	35	42	47
P-0003511-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39895178	42878695	Intron of ERG(-): 52Kb after exon 3	Intron of TMPRSS2(-): 1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.39+52408:ERG_c.55+1182:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2983517	NA	0	40	45	40
P-0003511-T03-IM5	SOMATIC	CDK6	SAMD9	7	7	92462548	92656964	Exon 2 of CDK6(-)	IGR: 72Kb before SAMD9(-)	GRCh37	INVERSION	CDK6 (NM_001145306) rearrangement: c.90:CDK6_chr7:g.92656964inv	PRECISE		MANUAL_OK	5to5	-	194416	NA	0	32	56	32
P-0004108-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27064968	27099990	Intron of ARID1A(+): 6Kb after exon 4	Intron of ARID1A(+): 3bp after exon 15	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1920+5685_c.3866+3dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons: out of frame	35022	NA	0	8	19	9
P-0001698-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39842569	42874789	Intron of ERG(-): 25Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3032220  bp):(TMRPSS2:c.56-4673_ERG:c.19-25025del)	PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3032220	NA	0	9	23	10
P-0003478-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117878917	117879597	Exon 2 of RAD21(-)	5-UTR of RAD21(-): 629bp before coding start	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	680	NA	0	5	21	6
P-0004201-T01-IM5	SOMATIC	ETV6	ETV6	12	12	12007239	12030131	Intron of ETV6(+): 744bp after exon 4	Intron of ETV6(+): 7Kb after exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+744_c.1009+7228del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	22892	NA	0	51	35	50
P-0003405-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683233	32417684	Intron of EWSR1(+): 110bp after exon 6	Intron of WT1(-): 119bp after exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	49	54	49
P-0002536-T01-IM3	SOMATIC	ERBB3	ESYT1	12	12	56495721	56530861	Exon 28 of ERBB3(+)	Intron of ESYT1(+): 141bp before exon 17	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ESYT1-ERBB3)	35140	NA	0	48	75	57
P-0002206-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39865870	42869351	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 695bp after exon 2	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3003481	NA	0	8	14	9
P-0001297-T01-IM3	SOMATIC	GSK3B	FSTL1	3	3	119721066	120146959	Exon 2 of GSK3B(-)	Intron of FSTL1(-): 12Kb before exon 3	GRCh37	DUPLICATION	None	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (GSK3B-FSTL1)	425893	NA	0	5	17	6
P-0004445-T01-IM5	SOMATIC	ROS1	GOLGB1	6	3	117645253	121434446	Intron of ROS1(-): 242bp after exon 34	Intron of GOLGB1(-): 623bp before exon 10	GRCh37	TRANSLOCATION	GOLGB1 (NM_004487) - ROS1 (NM_002944) rearrangement : t(3;6)(3q13.33;6q22.1)(chr3:121434446::chr6:117645253)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (GOLGB1-ROS1)	0	NA	0	67	31	66
P-0001840-T02-IM5	SOMATIC	SDC4	ROS1	20	6	43962893	117650732	Intron of SDC4(-): 1Kb before exon 3	Intron of ROS1(-): 123bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(20;6) (q13.12;q22.1) (chr20:g.43962893::chr6:g.117650732)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (SDC4-ROS1)	0	NA	0	49	0	46
P-0001440-T01-IM3	SOMATIC	CREBBP	CREBBP	16	16	3817857	3836919	Exon 16 of CREBBP(-)	Intron of CREBBP(-): 4Kb before exon 6	GRCh37	DUPLICATION	None	PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	19062	NA	0	30	50	25
P-0003175-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098938	178101069	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-): 2Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2131	NA	0	6	23	7
P-0002810-T01-IM3	SOMATIC	KIAA1217	FGFR2	10	10	24736390	123240874	Intron of KIAA1217(+): 9Kb after exon 6	Intron of FGFR2(-): 1Kb before exon 18	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-KIAA1217)	98504484	NA	0	45	46	42
P-0003592-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834423	42866560	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 55bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_001243428) fusion: c.127-55:TMPRSS2_c.40-16879:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3032137	NA	0	23	33	26
P-0004283-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862341	42875256	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.55+4621:TMPRSS2_c.18+7946:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3012915	NA	0	18	28	18
P-0004283-T01-IM5	SOMATIC	MX1	TMPRSS2	21	21	42830104	42874494	Intron of MX1(+): 351bp before exon 17	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	INVERSION	MX1 (NM_001178046) - TMPRSS2 (NM_001135099) rearrangement : c.1759-351:MX1_c.56-4378:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (MX1-TMPRSS2)	44390	NA	0	9	15	9
P-0001695-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55219816	55221812	Intron of EGFR(+): 423bp before exon 6	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) intragenic deletion: c.629-423_c.856del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	1996	NA	0	6	16	6
P-0004215-T01-IM5	SOMATIC	MLL2	FAM19A2	12	12	49432467	61283478	Exon 34 of MLL2(-)	IGR: 819Kb before FAM19A2(-)	GRCh37	DELETION	MLL2 (NM_003482) rearrangement: c.8672:MLL2_chr12:61283478del	PRECISE		MANUAL_OK	3to5	-	11851011	NA	0	20	42	20
P-0001867-T01-IM3	SOMATIC	APC	APC	5	5	112173414	112189021	Exon 16 of APC(+)	IGR: 7Kb after APC(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	-	15607	NA	0	22	84	63
P-0121460-T01-IM5	SOMATIC	CIC	CIC	19	19	42790968	42798856	Exon 2 of CIC(+)	Exon 19 of CIC(+)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	7888	NA	0	93	160	150
P-0121460-T01-IM5	SOMATIC	CIC	CIC	19	19	42790972	42798542	Exon 2 of CIC(+)	Intron of CIC(+): 86bp after exon 18	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7570	NA	1	54	105	137
P-0002178-T01-IM3	SOMATIC	TNFAIP3	TNFAIP3	6	6	138195467	138196055	Intron of TNFAIP3(+): 515bp before exon 3	Exon 3 of TNFAIP3(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	588	NA	0	39	59	43
P-0004529-T01-IM5	SOMATIC	POLE	POLE	12	12	133215652	133229216	Intron of POLE(-): 59bp after exon 40	Intron of POLE(-): 3Kb before exon 30	GRCh37	DELETION	POLE(NM_006231) Rearrangement : c.5552+59_3583-2741del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons: out of frame	13564	NA	0	5	8	5
P-0004529-T01-IM5	SOMATIC	RAB35	CDH12	12	5	120554384	21898797	Intron of RAB35(-): 19bp after exon 1	Intron of CDH12(-): 44Kb before exon 7	GRCh37	TRANSLOCATION	CDH12 (NM_004061) Rearrangement :  t(12;5)(12q24.23;5p14.3)(chr12:g.1120554384::chr5:g.21898797)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	43	60	42
P-0004473-T01-IM5	SOMATIC	LEUTX	CIC	19	19	40276622	42799313	Exon 3 of LEUTX(+)	Exon 20 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) - LEUTX (NM_001143832) rearrangement: c.4797:CIC_c.354:LEUTXdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (CIC-LEUTX)	2522691	NA	0	55	68	55
P-0004600-T01-IM5	SOMATIC	FGFR1	ACPP	8	3	38286054	132081259	Intron of FGFR1(-): 101bp before exon 3	Intron of ACPP(+): 5Kb before exon 11	GRCh37	TRANSLOCATION	ACPP (NM_001134194) - FGFR1 (NM_001174067) rearrangement :t(3;8)(3q22.1;8p11.33)(chr3:g.132081259::chr8:g.38286054)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ACPP-FGFR1)	0	NA	0	30	22	28
P-0003297-T01-IM5	SOMATIC	ALK	EML4	2	2	29448259	42504374	Intron of ALK(-): 68bp after exon 19	Intron of EML4(+): 4Kb before exon 6	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13056115	NA	0	27	41	27
P-0001226-T01-IM3	SOMATIC	NF1	PPM1D	17	17	29586265	58638802	Intron of NF1(+): 118bp after exon 32	IGR: 39Kb before PPM1D(+)	GRCh37	DELETION	NF1 (NM_001042492) Deletion (29052537bp): c.4430+118_g.17:58638802del	PRECISE		AUTO_OK	3to5	-	29052537	NA	0	10	17	9
P-0004284-T01-IM5	SOMATIC	NF1	STAT5B	17	17	29412409	40384106	IGR: 10Kb before NF1(+)	Exon 2 of STAT5B(-)	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement : c.40_chr17:g.29412409inv	PRECISE		MANUAL_OK	5to5	-	10971697	NA	0	23	37	23
P-0002971-T02-IM5	SOMATIC	TMPRSS2	CHD3	21	17	42871618	7811475	Intron of TMPRSS2(-): 2Kb before exon 2	Intron of CHD3(+): 138bp after exon 33	GRCh37	TRANSLOCATION	CHD3 (NM_001005271) - TMPRSS2 (NM_001135099)  Rearrangement : t(17;21)(17p13.1;21q22.3)(chr17:g.7811475::chr21:g.42871618)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (CHD3-TMPRSS2)	0	NA	0	53	37	54
P-0002971-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39919820	42871462	Intron of ERG(-): 28Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_001136154) Fusion  (TMPRSS2 exon 2 fused to ERG exon 4):  c.127-1520:TMPRSS2_c.39+27766:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2951642	NA	0	19	22	19
P-0003599-T01-IM5	SOMATIC	NCOR1	NCOR1	17	17	15951192	15952331	Intron of NCOR1(-): 785bp before exon 42	Intron of NCOR1(-): 29bp before exon 41	GRCh37	INVERSION	c.6393-29_6537-785inv	PRECISE		MANUAL_OK	3to3	-	1139	NA	0	43	30	42
P-0002803-T01-IM3	SOMATIC	TNRC6B	EPHA5	22	4	40572956	66467833	Intron of TNRC6B(+): 21Kb after exon 4	Exon 3 of EPHA5(-)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (EPHA5-TNRC6B)	0	NA	0	11	24	11
P-0004055-T01-IM5	SOMATIC	ROS1	ROS1	6	6	117611941	117650544	Intron of ROS1(-): 2Kb before exon 43	Exon 32 of ROS1(-)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5314_6734-1976del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	38603	NA	0	20	47	26
P-0004055-T01-IM5	SOMATIC	LATS1	LATS1	6	6	150001245	150002246	Exon 5 of LATS1(-)	Intron of LATS1(-): 653bp before exon 5	GRCh37	INVERSION	LATS1 (NM_004690) rearrangement: c.2011-653_2359inv	IMPRECISE		MANUAL_OK	3to3	-	1001	NA	0	18	0	12
P-0001699-T02-IM5	SOMATIC	NAB2	STAT6	12	12	57488298	57504930	Intron of NAB2(+): 97bp before exon 7	3-UTR of STAT6(-): 267bp after coding stop	GRCh37	DUPLICATION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-97:NAB2_c.*2057:STAT6dup	PRECISE		MANUAL_OK	5to3	-	16632	NA	0	102	59	102
P-0001699-T02-IM5	SOMATIC	PBRM1	PBRM1	3	3	52614471	52621620	Intron of PBRM1(-): 1Kb before exon 22	Intron of PBRM1(-): 94bp before exon 18	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.3292-1256_c.2966-169dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons: out of frame	7149	NA	0	34	12	17
P-0003701-T01-IM5	SOMATIC	BRCA1	BRCA1	17	17	41236723	41244995	Intron of BRCA1(-): 2Kb before exon 11	Exon 10 of BRCA1(-)	GRCh37	DUPLICATION	c.2553_c.4186-2131dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	8272	NA	0	33	45	37
P-0003701-T01-IM5	SOMATIC	MAP3K1	MAP3K1	5	5	55923853	56189369	IGR: 187Kb before MAP3K1(+)	Exon 20 of MAP3K1(+)	GRCh37	DELETION	g.55923853_c.4401:MAP3K1del	PRECISE		MANUAL_OK	3to5	-	265516	NA	0	92	86	120
P-0003701-T01-IM5	SOMATIC	ESR1	TACR1	6	2	152265435	75283209	Exon 6 of ESR1(+)	Intron of TACR1(-): 2Kb before exon 3	GRCh37	TRANSLOCATION	t(6;2)(q21;p12)(c.888_c.585-2327)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ESR1-TACR1)	0	NA	0	14	17	14
P-0002691-T01-IM3	SOMATIC	CDKN1B	CDKN1B	12	12	12865221	12871871	IGR: 5Kb before CDKN1B(+)	Exon 2 of CDKN1B(+)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	6650	NA	0	7	12	5
P-0003419-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875828	42877994	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	c.40-58284:ERG_c.55+1883:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3002166	NA	0	28	53	33
P-0003949-T01-IM5	SOMATIC	MLL2	MON2	12	12	49444046	62972683	Exon 11 of MLL2(-)	Intron of MON2(+): 398bp after exon 31	GRCh37	INVERSION	MLL2 (NM_003482) - MON2 (NM_015026) Rearrangement : c.3325:MLL2_c.4575+398:MON2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (MLL2-MON2)	13528637	NA	0	50	40	50
P-0004127-T01-IM5	SOMATIC	ABCA12	IRS1	2	2	215857241	227660487	Intron of ABCA12(-): 1Kb before exon 16	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) - ABCA12(NM_173076)  Rearrangement : c.2968:IRS1_c.3295-1486:ABCA12inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	11803246	NA	0	34	19	33
P-0001155-T01-IM3	SOMATIC	RET	NCOA4	10	10	43610941	51583999	Intron of RET(+): 757bp after exon 11	Intron of NCOA4(+): 617bp before exon 9	GRCh37	DUPLICATION	RET (NM_020630) - NCOA4 (NM_005437) Duplication : c.2136+757_c.715-617dup	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (NCOA4-RET)	7973058	NA	0	34	47	35
P-0001129-T01-IM3	SOMATIC	EWSR1	NR4A3	22	9	29693772	102588567	Intron of EWSR1(+): 45bp before exon 12	5-UTR of NR4A3(+): 2Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - NR4A3 (NM_006981) Translocation:  t(22;9)(q12;q22.33)(chr22:c.1295-45::chr9:c.-3+453)	PRECISE		AUTO_OK	3to5	Transcript fusion (EWSR1-NR4A3)	0	NA	0	14	18	20
P-0003424-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67591145	67593248	Exon 7 of PIK3R1(+)	Exon 10 of PIK3R1(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2103	NA	0	15	31	18
P-0000673-T01-IM3	SOMATIC	LRCH1	RB1	13	13	47294994	48919186	Intron of LRCH1(+): 2Kb before exon 16	Intron of RB1(+): 30bp before exon 4	GRCh37	INVERSION		PRECISE		AUTO_OK	5to5	-	1624192	NA	0	32	64	32
P-0002001-T01-IM3	SOMATIC	MTOR	RGL1	1	1	11290916	183668918	Intron of MTOR(-): 66bp after exon 18	5-UTR of RGL1(+): 42Kb before coding start	GRCh37	INVERSION	MTOR (NM_004958) - RGL1 (NM_015149) inversion:  c.2779+66:MTOR_c.-32-42343:RGL1inv	PRECISE		AUTO_OK	5to5	Transcript fusion (MTOR-RGL1)	172378002	NA	0	8	17	8
P-0001325-T01-IM3	SOMATIC	IRS2	IRS2	13	13	110408673	110411128	Intron of IRS2(-): 18bp before exon 2	Intron of IRS2(-): 2Kb before exon 2	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within intron	2455	NA	0	21	43	25
P-0001717-T01-IM3	SOMATIC	ARID1A	EPB41	1	1	27100957	29241332	Exon 18 of ARID1A(+)	5-UTR of EPB41(+): 73Kb before coding start	GRCh37	DUPLICATION	EPB41 (NM_001166005) - ARID1A (NM_006015) duplication:   c.-8+27610_c.4239del	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (EPB41-ARID1A)	2140375	NA	0	14	36	14
P-0001717-T01-IM3	SOMATIC	MLL3	DPP6	7	7	151864496	154220559	Intron of MLL3(-): 33bp before exon 42	Intron of DPP6(+): 17Kb before exon 4	GRCh37	INVERSION	DPP6 (NM_130797) - MLL3 (NM_170606) inversion: c.458-17058_c.9518-33inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (DPP6-MLL3)	2356063	NA	0	44	30	44
P-0003603-T01-IM5	SOMATIC	ERCC2	ERCC2	19	19	45856513	45863925	Exon 18 of ERCC2(-)	Intron of ERCC2(-): 857bp after exon 11	GRCh37	INVERSION	c.1237+857_1745inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	7412	NA	0	6	14	6
P-0004455-T01-IM5	SOMATIC	SETD2	SETD2	3	3	47131668	47165098	Intron of SETD2(-): 2Kb before exon 10	Exon 3 of SETD2(-)	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement event : c.1028_5143-1931inv	PRECISE		MANUAL_OK	3to3	-	33430	NA	0	18	17	18
P-0002304-T01-IM3	SOMATIC	SHBG	TP53	17	17	7541002	7579659	IGR: 8Kb before SHBG(+)	Intron of TP53(-): 41bp after exon 3	GRCh37	DELETION	TP53 (NM_000546) Deletion : g.7541002_c.96+41del	PRECISE		MANUAL_OK	3to5	-	38657	NA	0	49	69	35
P-0002304-T01-IM3	SOMATIC	TP53	SPDYE4	17	17	7579694	8654277	Intron of TP53(-): 6bp after exon 3	IGR: 2Kb before SPDYE4(-)	GRCh37	DELETION	TP53 (NM_000546) Deletion : c.96+6_g.8654277del	IMPRECISE		AUTO_OK	3to5	-	1074583	NA	0	29	0	34
P-0002364-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39926743	42872677	Intron of ERG(-): 21Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2945934	NA	0	6	21	6
P-0000187-T01-IM3	SOMATIC	RB1	TGFB2	13	1	48916784	218540078	Exon 3 of RB1(+)	Intron of TGFB2(+): 3Kb after exon 2	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	5to5	-	0	NA	0	52	62	47
P-0004140-T02-IM5	SOMATIC	TP53	TP53	17	17	7577916	7580658	Intron of TP53(-): 261bp after exon 6	5-UTR of TP53(-): 746bp before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-718_c.672+261del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2742	NA	0	14	17	12
P-0004157-T01-IM5	SOMATIC	IRS2	LGSN	13	6	110437561	64016458	Exon 1 of IRS2(-)	Intron of LGSN(-): 12Kb before exon 2	GRCh37	TRANSLOCATION	IRS2 (NM_003749) - LGSN (NM_016571) translocation: t(13;6)(q34;q12)(chr13:g.110437561::chr6:g.64016458)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (IRS2-LGSN)	0	NA	0	23	0	22
P-0004213-T01-IM5	SOMATIC	ZFHX3	AGBL1	16	15	72827570	87282028	Exon 9 of ZFHX3(-)	Intron of AGBL1(+): 64Kb after exon 22	GRCh37	TRANSLOCATION	GBL1 (NM_152336) - ZFHX3 (NM_006885) rearrangement: t(15;16)(15q25.3;16q22.2)(chr15:g.87282028::chr16:72827570)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (AGBL1-ZFHX3)	0	NA	0	54	29	54
P-0003998-T01-IM5	SOMATIC	ARID1B	LOC729234	6	2	157521845	96603238	Exon 18 of ARID1B(+)	IGR: 73Kb before LOC729234(+)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) and LOC729234 translocation: t(6;2) (q25.3;q11.1)  (chr6:g.157521845::chr2:g.96603238)	PRECISE		MANUAL_OK	5to5	-	0	NA	1	33	39	18
P-0001840-T01-IM3	SOMATIC	SDC4	ROS1	20	6	43962892	117650688	Intron of SDC4(-): 1Kb before exon 3	Intron of ROS1(-): 79bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) Translocation :  t(20;6)(q13.12;q22.1)(chr20:43962892::chr6:117650688)	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (SDC4-ROS1)	0	NA	0	54	54	0
P-0000224-T01-IM3	SOMATIC	TMPRSS2	WFDC3	21	20	42873074	44383097	Intron of TMPRSS2(-): 3Kb before exon 2	IGR: 20Kb before WFDC3(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Translocation  t(21;20)(q13.12;q22.3)(g.42873074_g.44383097)	PRECISE		AUTO_OK	5to3	-	0	NA	0	30	50	0
P-0000224-T01-IM3	SOMATIC	TMPRSS2	RIPK4	21	21	42871370	43169120	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of RIPK4(-): 194bp after exon 4	GRCh37	DELETION	TMPRSS2 (NM_001135099) - RIPK4 (NM_012309) 297750bp Deletion:  c.56-1254G_c.1632-813del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (RIPK4-TMPRSS2)	297750	NA	0	11	26	11
P-0002351-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1737028	1808871	Exon 7 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142)  and TACC3 (NM_006342) duplication (71843bp):  FGFR3:c.2303_TACC3:c.1620dup	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	71843	NA	0	21	47	22
P-0000557-T01-IM3	SOMATIC	ALK	EML4	2	2	29446543	42494981	Intron of ALK(-): 149bp before exon 20	Intron of EML4(+): 3Kb after exon 5	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13048438	NA	0	10	19	10
P-0003450-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42853458	42868348	Intron of TMPRSS2(-): 929bp before exon 6	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	14890	NA	0	34	41	37
P-0003592-T02-IM5	SOMATIC	NCOR1	NCOR1	17	17	15974201	15975388	Intron of NCOR1(-): 362bp before exon 31	Intron of NCOR1(-): 71bp after exon 29	GRCh37	DELETION	NCOR1(NM_006311) rearrangement :  c.4153-362_3895+71del	IMPRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	1187	NA	0	9	0	5
P-0003592-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834423	42866560	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 55bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 2 fused to ERG exon 4 ) :  c.127-55:TMPRSS2_c.19-16879:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3032137	NA	0	27	45	28
P-0001628-T01-IM3	SOMATIC	ARID2	ARID2	12	12	46227782	46231208	Intron of ARID2(+): 3Kb before exon 7	Intron of ARID2(+): 8bp after exon 9	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	3426	NA	0	14	26	16
P-0001628-T01-IM3	SOMATIC	STK11	STK11	19	19	1220710	1223308	Exon 5 of STK11(+)	Intron of STK11(+): 137bp after exon 8	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2598	NA	0	36	59	36
P-0003556-T01-IM5	SOMATIC	IRS2	IRS2	13	13	110435056	110534798	Exon 1 of IRS2(-)	IGR: 129Kb before IRS2(-)	GRCh37	DUPLICATION	None	PRECISE		MANUAL_OK	5to3	-	99742	NA	0	11	24	12
P-0001323-T01-IM3	SOMATIC	RND1	MLL2	12	12	49256308	49433591	Intron of RND1(-): 407bp before exon 3	Exon 31 of MLL2(-)	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MLL2-RND1)	177283	NA	0	39	47	40
P-0001902-T01-IM3	SOMATIC	NFASC	IKBKE	1	1	204963217	206652479	Intron of NFASC(+): 3Kb after exon 25	Intron of IKBKE(+): 3bp after exon 10	GRCh37	DUPLICATION	IKBKE (NM_014002) - NFASC (NM_001005388) Duplication   : c.1183+3_c.2782+2783dup	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (IKBKE-NFASC)	1689262	NA	0	8	25	9
P-0001423-T01-IM3	SOMATIC	BCOR	BCOR	X	X	39911656	39922981	Intron of BCOR(-): 3bp before exon 14	Exon 7 of BCOR(-)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	11325	NA	0	46	88	54
P-0003602-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39926326	42876381	Intron of ERG(-): 21Kb after exon 3	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	c.55+3496:TMPRSS2_c.39+21260:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2950055	NA	0	39	41	40
P-0002665-T01-IM3	SOMATIC	DIS3	PIBF1	13	13	73355156	73358073	Intron of DIS3(-): 15bp before exon 2	Intron of PIBF1(+): 214bp after exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	2917	NA	0	17	27	21
P-0008563-T02-IM5	SOMATIC	APC	APC	5	5	112134112	112170817	Intron of APC(+): 3Kb before exon 8	Exon 15 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.730-2864_c.1913inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	36705	NA	0	5	20	5
P-0005535-T01-IM5	SOMATIC	SKINTL	CDKN2C	1	1	48479133	51434357	IGR: 88Kb before SKINTL(-)	Promoter of CDKN2C(+): 10bp from tx start	GRCh37	DELETION	CDKN2C (NM_078626) rearrangement: c.-1684:CDKN2C_chr1:g.48479133del	PRECISE		MANUAL_OK	3to5	-	2955224	NA	0	16	20	16
P-0005261-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117875348	117887325	Intron of RAD21(-): 21bp after exon 3	Promoter of RAD21(-): 220bp from tx start	GRCh37	INVERSION	RAD21 (NM_006265) Rearrangement: c.-508_c.274+21inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	11977	NA	0	24	30	24
P-0006108-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862002	42869746	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 300bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10) : c.126+300:TMPRSS2_c.18+8285:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3007744	NA	0	24	24	21
P-0006108-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42849497	42866553	Intron of TMPRSS2(-): 950bp before exon 8	Intron of TMPRSS2(-): 48bp before exon 3	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement : c.127-48_795-950dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	17056	NA	0	76	43	72
P-0004850-T01-IM5	SOMATIC	GNA11	TYK2	19	19	3113211	10461378	Intron of GNA11(+): 117bp before exon 3	3-UTR of TYK2(-): 132bp after coding stop	GRCh37	DUPLICATION	None	PRECISE		MANUAL_OK	5to3	-	7348167	NA	0	16	20	16
P-0004850-T01-IM5	SOMATIC	DNMT1	C19orf38	19	19	10246930	10963762	Exon 38 of DNMT1(-)	Intron of C19orf38(+): 3Kb after exon 2	GRCh37	DELETION	DNMT1(NM_001379) Rearrangement :  c.4475:DNMT1_c.340+2519:C19orf38del	PRECISE		MANUAL_OK	3to5	-	716832	NA	0	62	69	57
P-0004850-T01-IM5	SOMATIC	ABCF3	EIF4A2	3	3	183910791	186505445	Intron of ABCF3(+): 99bp before exon 19	Intron of EIF4A2(+): 72bp after exon 9	GRCh37	DUPLICATION	EIF4A2(NM_001967) - ABCF3(NM_018358) Rearrangement : c.999+72:EIF4A2_c.1751-99:ABCF3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (EIF4A2-ABCF3)	2594654	NA	0	35	45	35
P-0006264-T01-IM5	SOMATIC	PAK7	PAK7	20	20	9546841	9553435	Exon 6 of PAK7(-)	Intron of PAK7(-): 6Kb before exon 6	GRCh37	DELETION	PAK7 (NM_177990) Rearrangement : c.991-6404_1181del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	6594	NA	0	34	40	32
P-0006370-T01-IM5	SOMATIC	ALK	EML4	2	2	29448124	42526234	Intron of ALK(-): 203bp after exon 19	Intron of EML4(+): 2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1490-2147:EML4_c.3172+203:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13078110	NA	0	64	106	64
P-0003139-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876764	42866368	Intron of ERG(-): 59Kb before exon 4	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-3 with ERG exons 4-10) : c.264:TMPRSS2_c.40-59220:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (TMPRSS2-ERG)	2989604	NA	0	102	77	108
P-0006730-T01-IM5	SOMATIC	KEAP1	ZNF599	19	19	10610197	35248755	Exon 2 of KEAP1(-)	IGR: 224bp before ZNF599(-)	GRCh37	DELETION	KEAP1(NM_203500) Rearrangement: c.513_chr19:35248755del	PRECISE		MANUAL_OK	3to5	-	24638558	NA	0	12	26	12
P-0009639-T01-IM5	SOMATIC	CDKN2B	CDKN2BAS	9	9	22008689	22170544	Intron of CDKN2B(-): 108bp after exon 1	IGR: 49Kb after CDKN2BAS(+)	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.156+108_chr9:g.22170544inv	PRECISE		MANUAL_OK	5to5	-	161855	NA	0	8	38	8
P-0004737-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88632786	12006809	Intron of NTRK3(-): 37Kb after exon 12	Intron of ETV6(+): 314bp after exon 4	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) Fusion (ETV6 exons 1 to 4 fused to NTRK3 exons 13 to 20) : t(12;15)(p13.2;q25.3)(chr12:g.12006809::chr15:g.88632786)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	72	28	71
P-0006656-T01-IM5	SOMATIC	BAGE2	MGA	21	15	11034318	41991303	3-UTR of BAGE2(-): 15Kb after coding stop	Exon 5 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement : t(15;21)(q15.1;p11.1)(chr15:g.41991303::chr21:g.11034318)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	65	26	52
P-0008427-T01-IM5	SOMATIC	LOC442459	BTK	X	X	97658964	100608862	IGR: 1Mb before LOC442459(-)	Exon 17 of BTK(-)	GRCh37	INVERSION	BTK (NM_000061) Rearrangement : chr10:g.97658964_c.1746:BTKinv	PRECISE		MANUAL_OK	5to5	-	2949898	NA	0	99	91	97
P-0004893-T01-IM5	SOMATIC	RUNX1	RUNX1	21	21	36237272	36253000	Intron of RUNX1(-): 5Kb before exon 3	Exon 2 of RUNX1(-)	GRCh37	DUPLICATION	RUNX1(NM_001754) rearrangement: c.362_c.509-5397dup.	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	15728	NA	0	57	58	57
P-0007359-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39873396	42873736	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 1 to 10) : c.56-3620:TMPRSS2_c.40-55852:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3000340	NA	0	3	5	3
P-0009726-T01-IM5	SOMATIC	MLL	MLL	11	11	118373832	118376957	Exon 27 of MLL(+)	Exon 27 of MLL(+)	GRCh37	DELETION	MLL (NM_001197104) rearrangement : c.7225_10350del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3125	NA	0	79	59	73
P-0008764-T01-IM5	SOMATIC	KIF5B	ALK	10	2	32305750	29448327	Intron of KIF5B(-): 321bp after exon 24	Exon 19 of ALK(-)	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - ALK (NM_004304) fusion (KIF5B exons 1-24 fused with ALK exons 19-29) : t(2;10)(p23.2;p11.22)(chr2:g.29448327::chr10:g.32305750)	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (KIF5B-ALK)	0	NA	0	81	30	78
P-0008161-T02-IM5	SOMATIC	NF1	NF1	17	17	29508637	29518813	Intron of NF1(+): 91bp before exon 7	Intron of NF1(+): 9Kb before exon 9	GRCh37	DUPLICATION	NF1(NM_001042492) Rearrangement :  c.655-91_889-8627dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	10176	NA	0	35	23	35
P-0008206-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39906086	42870501	Intron of ERG(-): 42Kb after exon 3	Intron of TMPRSS2(-): 385bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.56-385:TMPRSS2_c.39+41500:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2964415	NA	0	102	94	113
P-0008101-T01-IM5	SOMATIC	KIF5B	RET	10	10	32310097	43610455	Intron of KIF5B(-): 38bp before exon 19	Intron of RET(+): 271bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-18 fused with RET exons 12-20) : c.2095-38:KIF5B_c.2136+271:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11300358	NA	0	70	85	67
P-0009835-T01-IM5	SOMATIC	CDK12	RECQL4	17	8	37656296	145739493	Intron of CDK12(+): 1Kb before exon 6	Intron of RECQL4(-): 2bp before exon 12	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - RECQL4 (NM_004260) rearrangement: t(8;17)(q24.3;q12)(chr8:g.145739493::chr17:g.37656296)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (CDK12-RECQL4)	0	NA	0	30	15	30
P-0009835-T01-IM5	SOMATIC	TMPRSS2	RIPK4	21	21	42870405	43174388	Intron of TMPRSS2(-): 289bp before exon 2	Intron of RIPK4(-): 2Kb after exon 2	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) - RIPK4 (NM_020639) rearrangement: c.56-289:TMPRSS2_c.474+2297:RIPK4dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-RIPK4)	303983	NA	0	13	37	13
P-0009353-T01-IM5	SOMATIC	ALK	EML4	2	2	29446465	42494278	Intron of ALK(-): 71bp before exon 20	Intron of EML4(+): 2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.667+2407:EML4_c.3173-71:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13047813	NA	0	14	24	14
P-0008125-T01-IM5	SOMATIC	APC	ADH5	5	4	112090591	100016219	Exon 2 of APC(+)	IGR: 6Kb after ADH5(-)	GRCh37	TRANSLOCATION	APC (NM_000038)  Rearrangement : t(5;4)(5q22.2;4q23)(chr5:g.112090591::chr4:g.100016219)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	31	25
P-0005620-T02-IM5	SOMATIC	ZNF697	NOTCH2	1	1	120171261	120465323	5-UTR of ZNF697(-): 3Kb before coding start	Exon 27 of NOTCH2(-)	GRCh37	DUPLICATION	ZNF697 (NM_001080470) - NOTCH2 (NM_024408) rearrangement: c.-37-250:ZNF697_c.4938:NOTCH2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ZNF697-NOTCH2)	294062	NA	0	39	40	37
P-0005620-T02-IM5	SOMATIC	SOX9	SOX9	17	17	70117955	70118729	Exon 1 of SOX9(+)	Intron of SOX9(+): 131bp before exon 2	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.423_c.432-131inv.	IMPRECISE		MANUAL_OK	3to3	Antisense fusion	774	NA	0	35	0	31
P-0007416-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870315	42875820	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exons 1 and fused with ERG exons 2 to 10) : c.55+4057:TMPRSS2_c.-11:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3005505	NA	0	57	51	54
P-0006310-T01-IM5	SOMATIC	IDH1	IDH1	2	2	209108817	209110109	Intron of IDH1(-): 489bp before exon 6	Exon 5 of IDH1(-)	GRCh37	DUPLICATION	IDH1 (NM_005896) Rearrangement :  c.454_521-489dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1292	NA	0	5	28	5
P-0007808-T01-IM5	SOMATIC	HCK	DNMT3B	20	20	30634953	31374968	IGR: 5Kb before HCK(+)	Intron of DNMT3B(+): 68bp before exon 6	GRCh37	INVERSION	DNMT3B (NM_006892) Rearrangement : chr20:g.30634953_c.433-68:DNMT3Binv	IMPRECISE		MANUAL_OK	5to5	-	740015	NA	0	41	0	36
P-0006640-T01-IM5	SOMATIC	DAZAP2	ERBB3	12	12	51631007	56493491	Promoter of DAZAP2(+): 2Kb from tx start	Exon 24 of ERBB3(+)	GRCh37	DELETION	DAZAP2 (NM_001136266) - ERBB3 (NM_001982) rearrangement : c.-1685: DAZAP2_c.2899:ERBB3dup	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DAZAP2-ERBB3)	4862484	NA	0	36	49	34
P-0006409-T01-IM5	SOMATIC	MYOF	FGFR2	10	10	95246173	123242229	IGR: 4Kb after MYOF(-)	Intron of FGFR2(-): 538bp before exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement : chr10:g.95246173_c.2301+983:FGFR2inv	PRECISE		MANUAL_OK	5to5	-	27996056	NA	0	34	47	34
P-0005538-T01-IM5	SOMATIC	BICC1	FGFR2	10	10	60566068	123242753	Intron of BICC1(+): 276bp before exon 16	Intron of FGFR2(-): 459bp after exon 16	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) reciprocal fusion (FGFR2 exons 1-17 with BICC1 exons 16-21): c.2301+459:FGFR2_c.2182-276:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62676685	NA	0	100	86	97
P-0006826-T01-IM5	SOMATIC	TTC28	FBXW7	22	4	29066046	153244355	Intron of TTC28(-): 10Kb after exon 1	Intron of FBXW7(-): 54bp before exon 12	GRCh37	TRANSLOCATION	TTC28 (NM_001145418) - FBXW7 (NM_033632) rearrangement : t(4;22)(q31.3;q12.1)(chr4:g.153244355::chr22:g.29066046)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TTC28-FBXW7)	0	NA	0	18	0	15
P-0006837-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39873621	42876181	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 1-10): c.55+3696:TMPRSS2_c.-3317:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3002560	NA	0	52	49	48
P-0006837-T02-IM5	SOMATIC	TMPRSS2	NLGN1	21	3	42872495	173935988	Intron of TMPRSS2(-): 2Kb before exon 2	Intron of NLGN1(+): 57Kb before exon 5	GRCh37	TRANSLOCATION	NLGN1 (NM_014932) - TMPRSS2 (NM_001135099) rearrangement: t(3;21)(q26.31;q22.3)(chr3:g.173935988::chr21:g.42872495)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NLGN1-TMPRSS2)	0	NA	0	94	48	94
P-0005463-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876650	42868071	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 fused to ERG exon 4) : c.127-1566:TMPRSS2 _c.40-59106:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2991421	NA	0	3	6	3
P-0006047-T02-IM5	SOMATIC	ROS1	EZR	6	6	117647241	159191331	Intron of ROS1(-): 146bp after exon 33	Intron of EZR(-): 355bp before exon 10	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion (EZR exons 1-9 with ROS1 exons 34-43): c.1091-355:EZR_c.5557+146:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EZR-ROS1)	41544090	NA	0	24	28	22
P-0006328-T01-IM5	SOMATIC	NRBF2	FGFR2	10	10	64912907	123241245	Intron of NRBF2(+): 364bp before exon 4	Intron of FGFR2(-): 2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - NRBF2 (NM_030759) rearrangement: c.2302-1710:FGFR2_c.157-364:NRBF2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-NRBF2)	58328338	NA	0	102	65	94
P-0001047-T02-IM5	SOMATIC	PIK3C2G	PIK3C2G	12	12	18633636	18658354	Intron of PIK3C2G(+): 8Kb before exon 18	Exon 23 of PIK3C2G(+)	GRCh37	DELETION	PIK3C2G (NM_004570)  rearrangement : c.2382-7747_c.3159:PIK3C2Gdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	24718	NA	0	48	60	48
P-0001047-T02-IM5	SOMATIC	TERT	CDH6	5	5	1294558	29735590	Exon 2 of TERT(-)	IGR: 1Mb before CDH6(+)	GRCh37	INVERSION	TERT (NM_198253) rearrangement : c.443:TERT_chr5:g.29735590inv	PRECISE		MANUAL_OK	3to3	-	28441032	NA	0	24	33	23
P-0001047-T02-IM5	SOMATIC	FLJ33360	IL7R	5	5	6309223	35874617	IGR: 1Kb before FLJ33360(-)	Exon 6 of IL7R(+)	GRCh37	INVERSION	FLJ33360  (NM_001001702) - IL7R (NM_002185) rearrangement : chr5:g.29735590_c.773:IL7Rinv	PRECISE		MANUAL_OK	5to5	-	29565394	NA	0	9	16	7
P-0008215-T01-IM5	SOMATIC	RPS6KA4	RPS6KA4	11	11	64132691	64134809	Intron of RPS6KA4(+): 82bp before exon 9	Intron of RPS6KA4(+): 795bp before exon 10	GRCh37	INVERSION	RPS6KA4 (NM_003942) rearrangement: c.907-82_c.1072-795inv	PRECISE		MANUAL_OK	5to5	-	2118	NA	0	17	20	11
P-0005243-T01-IM5	SOMATIC	SPATS1	SPEN	6	1	44317945	16256583	Intron of SPATS1(+): 3Kb before exon 3	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) - SPATS1 (NM_145026)  Rearrangement : t(1;6)(1p36.13:6q22.31)(chr1:g.16256583::chr6:g.123239745:)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (SPEN-SPATS1)	0	NA	0	32	0	32
P-0007032-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157482865	157502198	Intron of ARID1B(+): 5Kb before exon 10	Exon 12 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement : c.2706-5309_3057inv	PRECISE		MANUAL_OK	5to5	-	19333	NA	0	24	30	23
P-0007547-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42842020	42871317	Intron of TMPRSS2(-): 555bp after exon 11	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement :  c.56-1201_1282+555inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	29297	NA	0	57	64	53
P-0004808-T01-IM5	SOMATIC	FGFR2	BET1	10	7	123242018	93694043	Intron of FGFR2(-): 327bp before exon 17	IGR: 60Kb after BET1(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;7)(q26.13;q21.3)(chr10:g.123242018::chr7:g.93694043)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	24	36	23
P-0005758-T01-IM5	SOMATIC	PPM1D	MAFG	17	17	58725322	79882216	Exon 4 of PPM1D(+)	5-UTR of MAFG(-): 1Kb before coding start	GRCh37	INVERSION	PPM1D (NM_003620) - MAFG (NM_032711) rearrangement : c.896:PPM1D_c.-1017:MAFGinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (PPM1D-MAFG)	21156894	NA	0	12	20	12
P-0009271-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21974752	22179390	Exon 1 of CDKN2A(-)	IGR: 58Kb after CDKN2BAS(+)	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement :  c.75_chr9:g.22179390inv	PRECISE		MANUAL_OK	3to3	-	204638	NA	0	62	63	43
P-0009339-T02-IM5	SOMATIC	ALK	EML4	2	2	29447889	42501120	Intron of ALK(-): 438bp after exon 19	Intron of EML4(+): 7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29) : c.668-6870:EML4_c.3172+438:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13053231	NA	0	102	107	101
P-0008542-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39824638	42875567	Intron of ERG(-): 7Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1 fused with ERG exons 2 -10 ) : c.55+4310:TMPRSS2_c.19-7094:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3050929	NA	0	65	57	64
P-0008382-T01-IM5	SOMATIC	EED	CNTN5	11	11	85956325	98018879	Exon 1 of EED(+)	IGR: 873Kb before CNTN5(+)	GRCh37	DELETION	EED (NM_003797) rearrangement : c.54:EED_chr11:g.98018879del	PRECISE		MANUAL_OK	3to5	-	12062554	NA	0	63	57	62
P-0008382-T01-IM5	SOMATIC	CCNE1	ZNF222	19	19	30308243	44529225	Intron of CCNE1(+): 54bp after exon 5	Promoter of ZNF222(+): 269bp from tx start	GRCh37	DELETION	CCNE1 (NM_001238) - ZNF222 (NM_001129996) rearrangement : c.326+54:CCNE1_c.-364:ZNF222del	PRECISE		MANUAL_OK	3to5	Transcript fusion (CCNE1-ZNF222)	14220982	NA	0	79	66	70
P-0006622-T01-IM5	SOMATIC	RNFT1	PPM1D	17	17	58037652	58677869	Intron of RNFT1(-): 123bp before exon 4	Exon 1 of PPM1D(+)	GRCh37	INVERSION	RNFT1 (NM_016125) - PPM1D (NM_003620) rearrangement : c.592-123:RNFT1_c.94:PPM1Dinv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (RNFT1-PPM1D)	640217	NA	0	20	58	19
P-0005422-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878466	42875709	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2(NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 ERG exon4 ) :  c.55+4168:TMPRSS2_c.40-60922:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2997243	NA	0	9	12	9
P-0008713-T01-IM5	SOMATIC	WIPF2	RPTOR	17	17	38424146	78681552	Intron of WIPF2(+): 3Kb after exon 5	Intron of RPTOR(+): 89bp before exon 4	GRCh37	DELETION	WIPF2 (NM_133264) - RPTOR (NM_020761) rearrangement: c.970+2748:WIPF2_c.349-89:RPTORdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (WIPF2-RPTOR)	40257406	NA	0	17	26	17
P-0009434-T01-IM5	SOMATIC	RPTOR	ONECUT1	17	15	78831704	53194795	Intron of RPTOR(+): 4bp after exon 13	IGR: 145Kb before ONECUT1(-)	GRCh37	TRANSLOCATION	RPTOR (NM_020761) Rearrangement t(15;17)(15q21.3;17q25.3)(15:g.53194795::chr17:g.78831704)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	21	11
P-0007793-T01-IM5	SOMATIC	SMAD3	IQCH	15	15	67482771	67664883	Exon 9 of SMAD3(+)	Exon 9 of IQCH(+)	GRCh37	DELETION	SMAD3 (NM_005902) - IQCH (NM_001031715) Rearrangement : c.1175:SMAD3_c.1188:IQCHdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SMAD3-IQCH)	182112	NA	0	16	30	16
P-0005602-T02-IM5	SOMATIC	OSMR	RICTOR	5	5	38676595	38949780	IGR: 169Kb before OSMR(+)	Intron of RICTOR(-): 34bp after exon 31	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement:chr5:g.38676595_c.4136+34:RICTORinv	PRECISE		MANUAL_OK	5to5	-	273185	NA	0	49	54	47
P-0007661-T01-IM5	SOMATIC	FCER1G	SDHC	1	1	161186379	161293404	Intron of FCER1G(+): 1Kb after exon 1	Exon 2 of SDHC(+)	GRCh37	DELETION	FCER1G (NM_004106) - SDHC (NM_003001) rearrangement  c.49+1219:FCER1G_c.21:SDHCdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (FCER1G-SDHC)	107025	NA	0	46	64	38
P-0007661-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11779457	12036882	IGR: 23Kb before ETV6(+)	Intron of ETV6(+): 497bp before exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement : chr12:g.11779457_c.1010-497:ETV6del	PRECISE		MANUAL_OK	3to5	-	257425	NA	0	53	56	52
P-0005677-T01-IM5	SOMATIC	NEGR1	NEGR1	1	1	72400980	72443863	Exon 2 of NEGR1(-)	Intron of NEGR1(-): 43Kb before exon 2	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.177-42869_c.191del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	42883	NA	0	37	61	37
P-0005677-T01-IM5	SOMATIC	TP53	TP53	17	17	7570306	7579258	IGR: 1Kb before TP53(-)	Intron of TP53(-): 54bp after exon 4	GRCh37	DELETION	TP53 (NM_000545) rearrangement: c.375+54_c.*2621del	PRECISE		MANUAL_OK	3to5	-	8952	NA	0	15	17	15
P-0009255-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265632	41266249	Intron of CTNNB1(+): 60bp after exon 2	Intron of CTNNB1(+): 5bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement :  c.13+60_241+5del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	617	NA	0	16	29	16
P-0006507-T01-IM5	SOMATIC	FLRT2	DICER1	14	14	87018577	95571517	IGR: 1Mb before FLRT2(+)	Exon 21 of DICER1(-)	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: chr14:g.87018577_c.3160:DICER1del.	PRECISE		MANUAL_OK	3to5	-	8552940	NA	0	49	59	48
P-0002647-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55206630	55223152	Intron of EGFR(+): 3Kb before exon 2	Intron of EGFR(+): 371bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-3349_890-371del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	16522	NA	0	102	160	279
P-0006896-T01-IM5	SOMATIC	MCF2L2	TP63	3	3	183126345	189582319	Intron of MCF2L2(-): 19Kb before exon 2	Intron of TP63(+): 112bp after exon 5	GRCh37	INVERSION	TP63 (NM_003722) - MCF2L2 (NM_015078) rearrangement: c.766+112:TP63_c.77-18778:MCF2L2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (TP63-MCF2L2)	6455974	NA	0	10	11	10
P-0121457-T01-IM5	SOMATIC	STAG2	STAG2	X	X	123148714	123211801	5-UTR of STAG2(+): 8Kb before coding start	Intron of STAG2(+): 6bp before exon 26	GRCh37	DELETION	STAG2 (NM_001042749) Rearrrangement :  c.-162-6503_2674-6del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	63087	NA	0	13	14	13
P-0006895-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971095	21974241	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 436bp after exon 1	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077)  rearrangement: c.150+436del_c.263del  CDKN2Ap14ARF (NM_058195)  rearrangement: c.194-3034_c.306del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3146	NA	0	23	23	15
P-0008534-T01-IM5	SOMATIC	FANCA	CLMN	16	14	89849554	95776664	Intron of FANCA(-): 44bp before exon 16	Intron of CLMN(-): 9Kb after exon 1	GRCh37	TRANSLOCATION	CLMN (NM_024734) - FANCA (NM_000135) rearrangement : t(14;16)(q32.13;q24.3)(chr14:g.95776664::chr16:g.89849554)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (CLMN-FANCA)	0	NA	0	20	39	20
P-0006916-T01-IM5	SOMATIC	NF1	NF1	17	17	29515887	29528519	Intron of NF1(+): 6Kb after exon 8	Intron of NF1(+): 16bp after exon 11	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement : c.888+6204_c.1260+16NF1dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: in frame	12632	NA	0	17	14	16
P-0005864-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39829980	42874935	Intron of ERG(-): 12Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 4-11):  c.56-4819:TMPRSS2_c.19-12436:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3044955	NA	0	39	41	38
P-0008178-T01-IM5	SOMATIC	ATP1B2	TP53	17	17	7555675	7578255	Intron of ATP1B2(+): 727bp after exon 1	Exon 6 of TP53(-)	GRCh37	INVERSION	TP53 (NM_000546) - ATP1B2 (NM_001678) rearrangement: c.594:TP53_c.112+727:ATP1B2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (TP53-ATP1B2)	22580	NA	0	13	24	13
P-0009590-T01-IM5	SOMATIC	ARID2	NUP107	12	12	46244087	69098856	Exon 15 of ARID2(+)	Intron of NUP107(+): 2Kb after exon 8	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.2181_chr12:g.69098856inv	PRECISE		MANUAL_OK	5to5	-	22854769	NA	0	23	36	23
P-0009361-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880684	42867892	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 4-11): c.127-1387:TMPRSS2_c.40-63140:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2987208	NA	0	7	20	7
P-0008036-T01-IM5	SOMATIC	BAP1	PHF7	3	3	52443894	52444579	Exon 1 of BAP1(-)	5-UTR of PHF7(+): 2Kb before coding start	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.-677_c.37+16del	IMPRECISE		MANUAL_OK	3to5	-	685	NA	0	17	0	16
P-0008551-T01-IM5	SOMATIC	MRPS15	CSF3R	1	1	36929386	36939079	Intron of MRPS15(-): 21bp after exon 2	Exon 6 of CSF3R(-)	GRCh37	DELETION	CSF3R (NM_000760) - MRPS15 (NM_031280) rearrangement: c.630:CSF3R_c.175+21:MRPS15del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CSF3R-MRPS15)	9693	NA	0	8	26	8
P-0007556-T01-IM5	SOMATIC	LATS2	LATS2	13	13	21559230	21562913	Intron of LATS2(-): 1Kb before exon 5	Exon 4 of LATS2(-)	GRCh37	INVERSION	LATS2 (NM_014572) rearrangement : c.1006_1900-1285inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	3683	NA	0	8	13	8
P-0006043-T01-IM5	SOMATIC	FGFR2	FGFR2	10	10	123170710	123240336	IGR: 67Kb before FGFR2(-)	Intron of FGFR2(-): 801bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2302-801_chr10:g.123170710inv	PRECISE		MANUAL_OK	5to5	-	69626	NA	0	89	61	83
P-0121497-T01-IM5	SOMATIC	TERT	TERT	5	5	1293907	1294542	Exon 2 of TERT(-)	Exon 2 of TERT(-)	GRCh37	DUPLICATION	TERT (NM_198253) rearrangement: c.459_c.1094dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	635	NA	0	54	65	53
P-0000690-T03-IM5	SOMATIC	BTC	FAT1	4	4	75641997	187542857	IGR: 29Kb before BTC(-)	Exon 10 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: chr4:g.75641997_c.4883:FAT1inv	PRECISE		MANUAL_OK	5to5	-	111900860	NA	0	25	29	22
P-0005903-T01-IM5	SOMATIC	KIAA1267	BRIP1	17	17	44165620	59876425	Intron of KIAA1267(-): 6Kb before exon 3	Intron of BRIP1(-): 36bp after exon 9	GRCh37	INVERSION	BRIP1 (NM_032043)  rearrangement: c.1340+36:BRIP1_chr17:g.44165620inv.	PRECISE		MANUAL_OK	5to5	Antisense fusion	15710805	NA	0	19	19	17
P-0008757-T01-IM5	SOMATIC	NCOA3	BCAS1	20	20	46264260	52673904	Exon 11 of NCOA3(+)	Intron of BCAS1(-): 720bp after exon 3	GRCh37	INVERSION	BCAS1 (NM_003657) - NCOA3 (NM_181659) rearrangement : c.142+720:BCAS1_c.1307:NCOA3inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (BCAS1-NCOA3)	6409644	NA	0	102	297	247
P-0007287-T01-IM5	SOMATIC	TGFBR2	GADL1	3	3	30648382	30799354	Exon 1 of TGFBR2(+)	Intron of GADL1(-): 20Kb after exon 14	GRCh37	INVERSION	GALD1 (NM_207359) - TGFBR2 (NM_001024847) rearrangement: c.1392+20317:GALD1_c.7:TGFBR2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (GADL1-TGFBR2)	150972	NA	0	10	43	10
P-0001357-T02-IM5	SOMATIC	C15orf57	IGF1R	15	15	40850867	99434595	Intron of C15orf57(-): 1Kb before exon 3	Exon 3 of IGF1R(+)	GRCh37	INVERSION	IGF1R (NM_000875) - C15orf57 (NM_001080792) Rearrangement :  c.682:IGF1R_c.245-1296:C15orf57	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (IGF1R-C15orf57)	58583728	NA	0	12	17	11
P-0008267-T01-IM5	SOMATIC	PBRM1	CACNA1D	3	3	52713624	53498367	Exon 2 of PBRM1(-)	IGR: 31Kb before CACNA1D(+)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.104:PBRM1_chr3.g.53498367del	PRECISE		MANUAL_OK	3to5	-	784743	NA	0	5	12	5
P-0004779-T01-IM5	SOMATIC	RB1	RB1	13	13	49023350	49033799	Intron of RB1(+): 4Kb before exon 18	Intron of RB1(+): 25bp before exon 20	GRCh37	INVERSION	RB1(NM_000321) Rearrangement :  c.1696-3779_1961-25inv	PRECISE		MANUAL_OK	5to5	-	10449	NA	0	12	20	12
P-0009958-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21969657	21971068	Intron of CDKN2A(-): 1Kb after exon 2	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement : c.333_*101+1244del CDKN2Ap16INK4A (NM_000077) rearrangement : c.290_457+1244del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1411	NA	0	16	32	14
P-0009787-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876148	42875609	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2(NM_001135099)  -ERG ()Fusion (TMPRS22 exon1 fused with ERG exons  4-10) :  c.55+4268:TMPRSS2_c.40-58604:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2999461	NA	0	76	86	75
P-0008134-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646080	149783121	Intron of ROS1(-): 502bp before exon 34	Intron of CD74(-): 246bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD274 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(5q32;6q22.1)(chr5:g.149783121::chr6:g.117646080  )	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	34	27	27
P-0007832-T01-IM5	SOMATIC	NF1	NF1	17	17	29420644	29422344	Promoter of NF1(+): 1Kb from tx start	Exon 1 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.-1684_c.17del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1700	NA	0	33	46	21
P-0008978-T01-IM5	SOMATIC	APC	APC	5	5	112073019	112175702	5-UTR of APC(+): 18Kb before coding start	Exon 16 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: c.-622_c.4411dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	102683	NA	0	102	79	128
P-0009105-T01-IM5	SOMATIC	SH3BGRL	NF1	X	17	81529667	29562678	IGR: 1Mb before SH3BGRL(+)	Exon 28 of NF1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;X)(q11.2;q22.1)(chr17:g.29562678::chrX:g.81529667)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	16	38
P-0002123-T02-IM5	SOMATIC	TMPRSS2	ACPP	21	3	42868047	132053847	Intron of TMPRSS2(-): 2Kb before exon 3	Intron of ACPP(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ACPP (NM_001134194) rearrangement: t(3;21)(q22.1;q22.3)(chr3:g.132053847::chr21:g.42868047)	PRECISE		MANUAL_OK	5to3	Antisense fusion	0	NA	0	15	35	15
P-0008437-T01-IM5	SOMATIC	SPSB4	ATR	3	3	140760042	142185263	IGR: 11Kb before SPSB4(+)	Exon 40 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement : chr3:g.140760042_c.6800:ATRdel	PRECISE		MANUAL_OK	3to5	-	1425221	NA	0	26	40	26
P-0009246-T01-IM5	SOMATIC	GLI1	ATXN7L3B	12	12	57864159	74478822	Exon 11 of GLI1(+)	IGR: 453Kb before ATXN7L3B(+)	GRCh37	DUPLICATION	GLI1 (NM_005269) rearrangement: c.1636_chr12:74478822dup	PRECISE		MANUAL_OK	5to3	-	16614663	NA	0	102	434	561
P-0009246-T01-IM5	SOMATIC	BRAF	RBM33	7	7	140482661	155466135	Intron of BRAF(-): 160bp after exon 10	Intron of RBM33(+): 526bp after exon 3	GRCh37	INVERSION	RBM33 (NM_053043) - BRAF (NM_004333) rearrangement: c.171+526:RBM33_c.1314+160:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (RBM33-BRAF)	14983474	NA	0	42	25	42
P-0005047-T01-IM5	SOMATIC	TMPRSS2	CYP4Z1	21	1	42874735	47561132	Intron of TMPRSS2(-): 5Kb before exon 2	Intron of CYP4Z1(+): 791bp after exon 7	GRCh37	TRANSLOCATION	CYP4Z1 (NM_178134) - TMPRSS2 (NM_001135099) rearrangement : t(1;21)(1p33;21q22.3)(chr1:g.47561132::chr21:g.42874735)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (CYP4Z1-TMPRSS2)	0	NA	0	52	34	33
P-0005047-T01-IM5	SOMATIC	TMPRSS2	ETV4	21	17	42875052	41635162	Intron of TMPRSS2(-): 5Kb after exon 1	IGR: 30Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement : t(17;21)(17q21.31;21q22.3)(chr17:g.41635162::chr21:g.42875052)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	68	0	47
P-0005792-T01-IM5	SOMATIC	TCF7L2	LOC100169752	10	10	114724315	127151116	Exon 4 of TCF7L2(+)	IGR: 112Kb before LOC100169752(+)	GRCh37	DUPLICATION	TCF7L2 (NM_001146274) rearrangement: c.382:TCF7L2_chr10:g.127151116dup	PRECISE		MANUAL_OK	5to3	-	12426801	NA	0	102	112	156
P-0008578-T01-IM5	SOMATIC	TFE3	DVL2	X	17	48891703	7133154	Exon 6 of TFE3(-)	Exon 5 of DVL2(-)	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - DVL2 (NM_004422) rearrangment : t(X;17)(p11.23;p13.1)(chrX:g.48891703::chr17:g.7133154)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	12	15	12
P-0009842-T01-IM5	SOMATIC	APC	APC	5	5	112173724	112177518	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.2433_c.6227del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3794	NA	0	14	22	14
P-0009190-T01-IM5	SOMATIC	NAALADL2	PIK3CA	3	3	174718565	178916718	Intron of NAALADL2(+): 96Kb before exon 2	Exon 2 of PIK3CA(+)	GRCh37	DELETION	NAALADL2 (NM_207015) - PIK3CA (NM_006218)  rearrangement :  c.44-96015:NAALADL2_c.105:PIK3CAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (NAALADL2-PIK3CA)	4198153	NA	0	51	68	48
P-0008705-T01-IM5	SOMATIC	PALB2	SLC1A2	16	11	23614820	35264295	Exon 13 of PALB2(-)	IGR: 8Kb before SLC1A2(-)	GRCh37	TRANSLOCATION	PALB2 (NM_024675) rearrangement: t(11;16)(p13;p12.2)(chr11:g.35264295::chr16:g.23614820)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	30	33
P-0009514-T01-IM5	SOMATIC	KIF5B	RET	10	10	32313425	43611811	Intron of KIF5B(-): 1Kb before exon 16	Intron of RET(+): 221bp before exon 12	GRCh37	INVERSION	Note: The KIF5B (NM_004521) - RET (NM_020975) reciprocal rearrangement event is an inversion which results in the fusion of KIF5B exons 1 to 15 and RET exons 12 to 20. The clinical trial research is currently ongoing with cabozantinib. PMID: 23533264	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11298386	NA	0	79	112	69
P-0007794-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5090887	5097361	Exon 22 of JAK2(+)	Intron of JAK2(+): 6Kb after exon 22	GRCh37	DELETION	JAK2 (NM_004972) Rearrangement :  c.3035_c.3059+6450del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	6474	NA	0	27	38	27
P-0006950-T01-IM5	SOMATIC	ALK	EML4	2	2	29447384	42524958	Intron of ALK(-): 943bp after exon 19	Intron of EML4(+): 2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1489+2302:EML4_c.3172+943:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13077574	NA	0	102	90	121
P-0004958-T01-IM5	SOMATIC	RAF1	RAF1	3	3	12627278	12631220	Exon 14 of RAF1(-)	Intron of RAF1(-): 1Kb after exon 12	GRCh37	DELETION	RAF1 (NM_002880) rearrangement : c.1370+1077_1438del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3942	NA	0	40	48	38
P-0009991-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187630747	187644073	Exon 2 of FAT1(-)	5-UTR of FAT1(-): 13Kb before coding start	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement :  c.-19+745_c.235del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	13326	NA	0	50	72	49
P-0009701-T01-IM5	SOMATIC	FGFR2	KCNH7	10	2	123239444	163263969	Exon 18 of FGFR2(-)	Intron of KCNH7(-): 7Kb before exon 10	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) -  KCNH7 (NM_033272) Rearrangement : t(2,10)(q24.3; q26.13) (chr2:g.163263969::chr10:g.123239444)	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR2-KCNH7)	0	NA	0	59	39	48
P-0006184-T01-IM5	SOMATIC	PGR	EXTL3	11	8	100996767	28568217	Exon 2 of PGR(-)	5-UTR of EXTL3(+): 5Kb before coding start	GRCh37	TRANSLOCATION	PGR(NM_000926)-EXTL3(NM_001440) rearrangement: t(8,11)(p21.1;q22.1)(chr8:g.28568217::chr11:g.100996767)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	39	46	38
P-0006184-T01-IM5	SOMATIC	NF1	MIR365-2	17	17	29592353	29900286	Exon 35 of NF1(+)	Promoter of MIR365-2(+): 2Kb from tx start	GRCh37	DELETION	NF1 (NM_001042492) - MIR365-2 (NR_029856) rearrangement: c.4831:NF1_g.29900286del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (NF1-MIR365-2)	307933	NA	0	50	40	49
P-0005294-T01-IM5	SOMATIC	MYEOV	FUBP1	11	1	69254932	78433319	IGR: 193Kb before MYEOV(+)	Exon 4 of FUBP1(-)	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) Rearrangement : t(11;1)(q13.3;p31.1)(chr11:g.69254932::chr1:g.78433319)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	12	26
P-0003096-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21969003	21974791	Intron of CDKN2A(-): 762bp before exon 3	Exon 1 of CDKN2A(-)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5788	NA	0	5	6	5
P-0003512-T01-IM5	SOMATIC	JAK2	LRP8	9	1	5111099	53774376	Intron of JAK2(+): 12Kb before exon 23	Intron of LRP8(-): 18Kb after exon 2	GRCh37	TRANSLOCATION	t(9;1)(9p24;1p34)(c.3060-1190::c.244+18169)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (JAK2-LRP8)	0	NA	0	12	32	12
P-0001077-T01-IM3	SOMATIC	CDC73	CDC73	1	1	193121489	193122380	Intron of CDC73(+): 21bp before exon 10	Intron of CDC73(+): 806bp after exon 10	GRCh37	DELETION	CDC73 (NM_024529) intragenic deletion: c.908-21_c.972+806del	PRECISE		AUTO_OK	3to5	Deletion of 1 exon: out of frame	891	NA	0	11	26	12
P-0004032-T01-IM5	SOMATIC	KIAA1549	BRAF	7	7	138538964	140487892	Intron of KIAA1549(-): 2Kb before exon 17	Intron of BRAF(-): 508bp before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) Fusion (KIAA1549 exon 16 fused to BRAF exon 9) : c.5248-1949:KIAA1549_c.1141-508:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1948928	NA	0	16	30	21
P-0002195-T01-IM3	SOMATIC	ATRX	ATRX	X	X	76813029	76944290	Exon 30 of ATRX(-)	Intron of ATRX(-): 21bp after exon 7	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	131261	NA	1	56	152	151
P-0003323-T01-IM5	SOMATIC	ALK	EML4	2	2	29447530	42492435	Intron of ALK(-): 797bp after exon 19	Intron of EML4(+): 564bp after exon 5	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13044905	NA	0	8	15	7
P-0004318-T01-IM5	SOMATIC	ROS1	EZR	6	6	117647543	159191783	Exon 33 of ROS1(-)	Intron of EZR(-): 13bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) rearrangement: c.1090+13:EZR_c.5401:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EZR-ROS1)	41544240	NA	0	16	15	16
P-0002603-T01-IM3	SOMATIC	CDKN2A	CDKN2A	9	9	21971106	21971675	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 468bp before exon 2	GRCh37	DELETION		IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	569	NA	0	15	0	17
P-0002855-T01-IM3	SOMATIC	TOP1MT	RECQL4	8	8	144394753	145742055	Intron of TOP1MT(-): 2Kb before exon 13	Exon 5 of RECQL4(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RECQL4-TOP1MT)	1347302	NA	0	17	22	19
P-0001911-T01-IM3	SOMATIC	TRAF7	E4F1	16	16	2221510	2283111	Intron of TRAF7(+): 63bp before exon 7	Exon 7 of E4F1(+)	GRCh37	DUPLICATION	E4F1 (NM_004424) - TRAF7 (NM_032271) Duplication:  c.983:E4F1_c.442-63:TRAF7dup (See Note)	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (E4F1-TRAF7)	61601	NA	0	39	87	49
P-0001884-T01-IM3	SOMATIC	POU2F2	CIC	19	19	42645881	42791355	IGR: 53Kb before POU2F2(-)	Exon 3 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) inversion:  chr19:g.42645881_CIC:c.415inv	PRECISE		AUTO_OK	5to5	-	145474	NA	0	21	42	18
P-0003845-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57487834	57493520	Intron of NAB2(+): 453bp after exon 6	Intron of STAT6(-): 30bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) -STAT6 (NM_003153) fusion (NAB2 exon 6 fused to STAT6 exon 16) :  c.1468+453:NAB2_c.1744+30:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5686	NA	0	43	44	87
P-0001760-T01-IM3	SOMATIC	ACTN4	AKT2	19	19	39176338	40742145	Intron of ACTN4(+): 15Kb before exon 2	Intron of AKT2(-): 19bp after exon 10	GRCh37	INVERSION	AKT2 (NM_001626) - ACTN4 (NM_004924) Inversion:  c.960+19:ATK2_c.163-14902:ACTN4inv	PRECISE		AUTO_OK	5to5	Protein fusion: in frame (AKT2-ACTN4)	1565807	NA	0	21	65	21
P-0001760-T01-IM3	SOMATIC	MYC	XCR1	8	3	128751033	46098474	Exon 2 of MYC(+)	IGR: 36Kb before XCR1(-)	GRCh37	TRANSLOCATION	MYC (NM_002467) Translocation:  t(8;3)(q24.21;p21.31)(chr8:g.128751033::chr3:g.46098474)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	101	26
P-0000485-T01-IM3	SOMATIC	SLC1A6	NOTCH3	19	19	15085678	15291568	Promoter of SLC1A6(-): 2Kb from tx start	Exon 19 of NOTCH3(-)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (SLC1A6-NOTCH3)	205890	NA	0	9	18	10
P-0001992-T01-IM3	SOMATIC	KDM5A	KDM5A	12	12	459479	465605	Intron of KDM5A(-): 308bp after exon 10	Exon 6 of KDM5A(-)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	6126	NA	0	36	70	37
P-0003502-T01-IM5	SOMATIC	BRAF	PJA2	7	5	140482379	108688305	Intron of BRAF(-): 442bp after exon 10	Intron of PJA2(-): 3Kb after exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (BRAF-PJA2)	0	NA	0	6	6	9
P-0004564-T01-IM5	SOMATIC	RAB35	HCN1	12	5	120536539	46027045	Intron of RAB35(-): 76bp after exon 5	IGR: 331Kb after HCN1(-)	GRCh37	TRANSLOCATION	RAB35 (NM_006861) translocation : t(12;5)(q24.23; p11)(chr12:g.20536539::chr5:g.46027045)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	36	24	35
P-0004564-T01-IM5	SOMATIC	RUNX1	RUNX1	21	21	36252942	36298459	Exon 2 of RUNX1(-)	Intron of RUNX1(-): 33Kb before exon 3	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.420_c.59-33199del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	45517	NA	0	33	46	33
P-0003171-T01-IM5	SOMATIC	SPPL2B	MAP2K2	19	19	2346293	4097282	Intron of SPPL2B(+): 965bp after exon 13	Exon 8 of MAP2K2(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Antisense fusion	1750989	NA	0	20	39	23
P-0000376-T02-IM3	SOMATIC	NF1	NF1	17	17	29560175	29561679	Exon 27 of NF1(+)	Intron of NF1(+): 950bp before exon 28	GRCh37	DELETION	NF1 (NM_001042492) Deletion (1504bp): c.3652_c.3709-950del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	1504	NA	0	23	22	25
P-0004133-T01-IM5	SOMATIC	SBNO2	JAK3	19	19	1109693	17955035	Exon 27 of SBNO2(-)	Intron of JAK3(-): 8bp after exon 2	GRCh37	DELETION	JAK3 (NM_000215) -SBNO2 (NM_014963) Rearrangement :  c.184+8:JAK3_c.3112:SBNO2del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (JAK3-SBNO2)	16845342	NA	0	24	36	25
P-0002260-T01-IM3	SOMATIC	LIMD1	BAP1	3	3	45702556	52436612	Intron of LIMD1(+): 5Kb before exon 3	Intron of BAP1(-): 6bp after exon 16	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (LIMD1-BAP1)	6734056	NA	0	19	46	85
P-0002260-T01-IM3	SOMATIC	LIMD1	BAP1	3	3	45702632	52436745	Intron of LIMD1(+): 5Kb before exon 3	Intron of BAP1(-): 50bp after exon 15	GRCh37	INVERSION	LIMD1 (NM_014240) - BAP1 (NM_004656) Inversion :  c.1511-4586:LIMD1_c.2056+6:BAP1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (BAP1-LIMD1)	6734113	NA	0	68	96	86
P-0001811-T01-IM3	SOMATIC	ALK	EML4	2	2	29448205	42525322	Intron of ALK(-): 122bp after exon 19	Intron of EML4(+): 3Kb after exon 12	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Inversion:  c.1315+2666:EML4_c.3172+122:ALKinv	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13077117	NA	0	6	19	6
P-0004351-T01-IM5	SOMATIC	SEMA3D	SMO	7	7	85241329	128851534	IGR: 490Kb after SEMA3D(-)	Exon 11 of SMO(+)	GRCh37	INVERSION	SMO (NM_005631) rearrangement (43610205bp):   chr7:g.85241329_c.1859inv	PRECISE		MANUAL_OK	3to3	-	43610205	NA	0	12	19	12
P-0004550-T01-IM5	SOMATIC	YES1	YES1	18	18	741661	745901	Intron of YES1(-): 1Kb after exon 8	Intron of YES1(-): 44bp before exon 6	GRCh37	INVERSION	YES1(NM_005433) Rearrangement : c.1060+1257_575-44inv	PRECISE		MANUAL_OK	3to3	-	4240	NA	0	55	41	52
P-0002170-T01-IM3	SOMATIC	EWSR1	ERG	22	21	29688289	39775034	Intron of EWSR1(+): 131bp after exon 9	Intron of ERG(-): 394bp after exon 6	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EWSR1-ERG)	0	NA	0	6	9	2
P-0002655-T01-IM3	SOMATIC	ABL1	ABL1	9	9	133742974	133760946	Intron of ABL1(+): 5Kb before exon 5	Exon 11 of ABL1(+)	GRCh37	INVERSION		IMPRECISE		MANUAL_OK	3to3	Antisense fusion	17972	NA	0	102	0	327
P-0002655-T01-IM3	SOMATIC	ABL1	ABL1	9	9	133742991	133760901	Intron of ABL1(+): 5Kb before exon 5	Exon 11 of ABL1(+)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	17910	NA	0	102	103	327
P-0001204-T01-IM3	SOMATIC	APC	APC	5	5	112179446	112183450	Exon 16 of APC(+)	IGR: 2Kb after APC(+)	GRCh37	DELETION	APC (NM_000038) Deletion (4004bp) : c.8155_g.112183450del	PRECISE		AUTO_OK	3to5	-	4004	NA	0	15	41	20
P-0002375-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39831667	42870585	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 469bp before exon 2	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3038918	NA	0	6	16	7
P-0003138-T01-IM5	SOMATIC	RICTOR	PTGER4	5	5	38943030	40048558	Exon 37 of RICTOR(-)	IGR: 631Kb before PTGER4(+)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	1105528	NA	0	69	71	67
P-0001343-T01-IM3	SOMATIC	NOTCH2	NOTCH2	1	1	120494218	120506358	Intron of NOTCH2(-): 758bp before exon 15	Exon 11 of NOTCH2(-)	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	12140	NA	0	63	70	70
P-0003818-T01-IM5	SOMATIC	AXL	AXL	19	19	41753659	41754599	Intron of AXL(+): 760bp before exon 12	Intron of AXL(+): 49bp before exon 13	GRCh37	DELETION	AXL (NM_021913) rearrangement : c.1538-760_1634-49del	IMPRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	940	NA	0	50	0	56
P-0004096-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098124	178116270	Intron of NFE2L2(-): 57bp before exon 3	Intron of NFE2L2(-): 13Kb after exon 1	GRCh37	DELETION	NFE2L2 (NM_006164) Rearrangement :   c.313-57_45+12990del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	18146	NA	0	5	4	5
P-0004427-T01-IM5	SOMATIC	NCOR1	NCOR1	17	17	16004718	16032936	Exon 20 of NCOR1(-)	Intron of NCOR1(-): 3Kb before exon 15	GRCh37	DUPLICATION	NCOR1 (NM_006311) rearrangement:     c.1510-3416_c.2536dup.	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	28218	NA	0	16	19	16
P-0004427-T01-IM5	SOMATIC	NF1	NF1	17	17	29679144	29681114	Intron of NF1(+): 131bp before exon 50	Intron of NF1(+): 2Kb after exon 50	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.7458-131_c.7615+1682duup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon: out of frame	1970	NA	0	27	36	23
P-0003239-T01-IM5	SOMATIC	NF1	NF1	17	17	29504565	29667650	Intron of NF1(+): 4Kb before exon 6	Exon 46 of NF1(+)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	163085	NA	0	10	30	12
P-0003619-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39903882	42869579	Intron of ERG(-): 44Kb after exon 3	Intron of TMPRSS2(-): 467bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exons 4-11)  : c.126+467:TMPRSS2_c.39+43704:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2965697	NA	0	9	21	12
P-0003413-T01-IM5	SOMATIC	POM121L4P	SMARCB1	22	22	20995795	24143313	IGR: 48Kb before POM121L4P(+)	Intron of SMARCB1(+): 45bp after exon 4	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	-	3147518	NA	0	8	43	17
P-0002784-T01-IM3	SOMATIC	RAD51L1	RAD51L1	14	14	68289680	68352675	5-UTR of RAD51L1(+): 581bp before coding start	Exon 6 of RAD51L1(+)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	62995	NA	0	7	9	7
P-0003754-T01-IM5	SOMATIC	STK11	CACNA1A	19	19	1206999	13358502	Exon 1 of STK11(+)	Intron of CACNA1A(-): 2Kb before exon 31	GRCh37	INVERSION	c.4870-2423:CACNA1A_c.87:STK11inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CACNA1A-STK11)	12151503	NA	0	11	34	7
P-0000058-T01-IM3	SOMATIC	ALK	DDX11L2	2	2	29446846	114360988	Intron of ALK(-): 452bp before exon 20	3-UTR of DDX11L2(-): 307bp after coding stop	GRCh37	INVERSION		35399162-N_bc20		AUTO_OK	5to5	-	84914142	NA	0	6	47	3
P-0003660-T01-IM5	SOMATIC	FGFR2	KIF14	10	1	123240038	200555931	Intron of FGFR2(-): 503bp before exon 18	Intron of KIF14(-): 576bp before exon 19	GRCh37	TRANSLOCATION	t(1;10)(q32.1;q26.13)(chr1:g.200555931::chr10:g.123240038)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR2-KIF14)	0	NA	0	84	65	0
P-0001898-T01-IM3	SOMATIC	RET	CCDC6	10	10	43611699	61624799	Intron of RET(+): 333bp before exon 12	Intron of CCDC6(-): 12Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) inversion: c.304-12339_c.2137-333inv5	PRECISE		AUTO_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18013100	NA	0	18	43	18
P-0001898-T01-IM3	SOMATIC	RET	RASSF4	10	10	43611749	45467653	Intron of RET(+): 283bp before exon 12	Intron of RASSF4(+): 357bp after exon 3	GRCh37	DELETION	RET (NM_020975) - RASSF4 (NM_032023) deletion: c.2137-283_c.138+357del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (RET-RASSF4)	1855904	NA	0	15	21	17
P-0121499-T01-IM5	SOMATIC	RAC1	RAC1	7	7	6416401	6439864	Intron of RAC1(+): 2Kb after exon 1	Intron of RAC1(+): 45bp after exon 4	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	23463	NA	0	20	28	24
P-0002997-T01-IM3	SOMATIC	SORBS2	FAT1	4	4	186650802	187522408	5-UTR of SORBS2(-): 39Kb before coding start	Intron of FAT1(-): 15bp after exon 21	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Antisense fusion	871606	NA	0	25	37	25
P-0004103-T01-IM5	SOMATIC	SND1	BRAF	7	7	127353500	140481685	Intron of SND1(+): 6Kb after exon 9	Intron of BRAF(-): 192bp before exon 11	GRCh37	INVERSION	SND1 (NM_014390) -  BRAF (NM_004333) rearrangement: c.1038+5799:SND1_c.1315-192:BRAFinv.	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13128185	NA	0	25	27	25
P-0002323-T01-IM3	SOMATIC	TRAP1	CREBBP	16	16	3736917	3779150	Intron of TRAP1(-): 780bp before exon 4	Exon 31 of CREBBP(-)	GRCh37	DUPLICATION	TRAP1 (NM_016292) and CREBBP (NM_004380) duplication (42233bp):    TRAP1:c.331-780_CREBBP:c.5898dup	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (TRAP1-CREBBP)	42233	NA	0	16	39	17
P-0004052-T01-IM5	SOMATIC	CDKN1B	CDKN1B	12	12	12871300	12874270	Intron of CDKN1B(+): 52bp after exon 1	3-UTR of CDKN1B(+): 2Kb after coding stop	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.475+52C_c.*309del	PRECISE		MANUAL_OK	3to5	-	2970	NA	0	27	93	37
P-0002873-T01-IM3	SOMATIC	KIF5B	RET	10	10	32312502	43611244	Intron of KIF5B(-): 538bp before exon 16	Intron of RET(+): 788bp before exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11298742	NA	0	33	45	33
P-0002873-T01-IM3	SOMATIC	DOT1L	DOT1L	19	19	2205552	2225422	Intron of DOT1L(+): 1Kb before exon 10	Exon 26 of DOT1L(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	19870	NA	0	6	13	6
P-0001338-T02-IM3	SOMATIC	DHX35	TOP1	20	20	37658302	39726899	Intron of DHX35(+): 1Kb before exon 20	Exon 11 of TOP1(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DHX35-TOP1)	2068597	NA	0	89	94	130
P-0003511-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39895178	42878695	Intron of ERG(-): 52Kb after exon 3	Intron of TMPRSS2(-): 1Kb after exon 1	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2983517	NA	0	26	58	43
P-0003511-T01-IM5	SOMATIC	CDK6	SAMD9	7	7	92462548	92656964	Exon 2 of CDK6(-)	IGR: 72Kb before SAMD9(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	194416	NA	0	35	66	35
P-0003511-T01-IM5	SOMATIC	MED12	MED12	X	X	70356358	70357535	Exon 37 of MED12(+)	Intron of MED12(+): 41bp before exon 41	GRCh37	INVERSION		IMPRECISE		MANUAL_OK	3to3	Antisense fusion	1177	NA	0	80	0	75
P-0002702-T01-IM3	SOMATIC	PARK2	PARK2	6	6	162321422	162475147	Intron of PARK2(-): 73Kb after exon 6	Exon 5 of PARK2(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	153725	NA	0	68	71	74
P-0001655-T01-IM3	SOMATIC	MYC	MYC	8	8	128750133	128755247	Intron of MYC(+): 361bp before exon 2	IGR: 7Kb before MYC(+)	GRCh37	INVERSION	MYC (NM_002467) intragenic inversion: c.31-361_c.*2043inv	PRECISE		AUTO_OK	3to3	-	5114	NA	0	11	17	11
P-0003329-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156100546	156845199	Exon 2 of LMNA(+)	Intron of NTRK1(+): 113bp before exon 12	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LMNA-NTRK1)	744653	NA	0	24	31	27
P-0003329-T01-IM5	SOMATIC	AXIN1	AXIN1	16	16	343643	344782	Exon 8 of AXIN1(-)	Intron of AXIN1(-): 1Kb before exon 8	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1139	NA	0	12	26	9
P-0003329-T01-IM5	SOMATIC	SOX9	SOX9	17	17	70119764	70122265	Exon 3 of SOX9(+)	3-UTR of SOX9(+): 2Kb after coding stop	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	2501	NA	0	16	25	17
P-0003657-T01-IM5	SOMATIC	SKA1	SMAD4	18	18	47978493	48584514	IGR: 58Kb after SKA1(+)	Exon 6 of SMAD4(+)	GRCh37	INVERSION	chr18:g.47978493_c.687:SMAD4inv	PRECISE		MANUAL_OK	5to5	-	606021	NA	0	7	10	7
P-0000901-T01-IM3	SOMATIC	SOX5	KRAS	12	12	24676942	25378676	5-UTR of SOX5(-): 628Kb before coding start	Exon 4 of KRAS(-)	GRCh37	DUPLICATION	SOX5 (NM_152989) - KRAS (NM_033360) Duplication (701734bp):  c.-258+38325_c.322dup	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (SOX5-KRAS)	701734	NA	0	52	57	55
P-0002707-T01-IM3	SOMATIC	SPEN	ZBTB40	1	1	16254600	22804072	Exon 11 of SPEN(+)	5-UTR of ZBTB40(+): 12Kb before coding start	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	6549472	NA	0	37	25	26
P-0002707-T01-IM3	SOMATIC	SPEN	USP48	1	1	16256478	22013292	Exon 11 of SPEN(+)	Intron of USP48(-): 392bp after exon 25	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (SPEN-USP48)	5756814	NA	0	29	25	29
P-0002707-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646946	149783660	Intron of ROS1(-): 441bp after exon 33	Intron of CD74(-): 583bp after exon 6	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ROS1-CD74)	0	NA	0	16	17	29
P-0003218-T01-IM5	SOMATIC	CSF1R	PDGFRB	5	5	149447359	149500820	Intron of CSF1R(-): 419bp after exon 11	Exon 17 of PDGFRB(-)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (CSF1R-PDGFRB)	53461	NA	1	21	52	23
P-0004386-T01-IM5	SOMATIC	NOTCH2	NOTCH2	1	1	120455718	120458797	3-UTR of NOTCH2(-): 2Kb after coding stop	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement : c.6548_*2211inv	PRECISE		MANUAL_OK	5to5	-	3079	NA	0	102	82	110
P-0004386-T01-IM5	SOMATIC	CUL5	NOTCH1	11	9	107944759	139390931	Intron of CUL5(+): 535bp after exon 10	Exon 34 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - CUL5 (NM_003478) rearrangement : t(9;11)(9q34.3;11q22.3)(chr9:g.139390931::chr11:g.107944759)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (NOTCH1-CUL5)	0	NA	0	17	8	17
P-0003716-T01-IM5	SOMATIC	SMARCA4	LDLR	19	19	11136195	11233588	Intron of SMARCA4(+): 11bp after exon 21	Intron of LDLR(+): 262bp before exon 15	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527)  rearrangement: c.3168+11:SMARCA4_c.2141-262:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SMARCA4-LDLR)	97393	NA	0	41	51	31
P-0004389-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56433547	56437466	Intron of RNF43(-): 1Kb before exon 10	Intron of RNF43(-): 44bp after exon 8	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.952+44_c.2309-120del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	3919	NA	0	7	4	7
P-0004336-T01-IM5	SOMATIC	ROS1	CD74	6	5	117647249	149783071	Intron of ROS1(-): 138bp after exon 33	Intron of CD74(-): 196bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 with ROS1 exons 34-43 ) : t(5;6)(5q32;6q22.1)(chr5:g.149783071::chr6:g.117647249)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	38	17	34
P-0004504-T01-IM5	SOMATIC	TBL3	CREBBP	16	16	2024261	3801687	Exon 3 of TBL3(+)	Intron of CREBBP(-): 40bp after exon 20	GRCh37	INVERSION	CREBBP (NM_004380) - TBL3 (NM_006453) rearrangement : c.157:TBL3_c.3779+40:CREBBPinv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CREBBP-TBL3)	1777426	NA	0	6	25	6
P-0002197-T01-IM3	SOMATIC	SND1	BRAF	7	7	127560808	140488303	Intron of SND1(+): 8Kb before exon 15	Intron of BRAF(-): 919bp before exon 9	GRCh37	INVERSION	c.1528-8436:SND1_c.1141-922:BRAFinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (BRAF-SND1)	12927495	NA	0	78	85	102
P-0004140-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56437948	56451892	Intron of RNF43(-): 196bp after exon 7	Intron of RNF43(-): 3Kb before exon 3	GRCh37	DUPLICATION	RNF43(NM_017763) Rearrangement: c.849+196_253-3498dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: in frame	13944	NA	0	5	9	5
P-0004140-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140488357	140551109	Intron of BRAF(-): 973bp before exon 9	Intron of BRAF(-): 1Kb before exon 2	GRCh37	DELETION	BRAF(NM_004333) Rearrangement : c.1141-973_139-1097del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: in frame	62752	NA	0	38	39	39
P-0002615-T02-IM5	SOMATIC	DOT1L	DOT1L	19	19	2207061	2210610	Intron of DOT1L(+): 265bp after exon 10	Intron of DOT1L(+): 10bp before exon 14	GRCh37	INVERSION	DOT1L (NM_032482)   Rearrangement  : c.856+265_1117-10inv	PRECISE		MANUAL_OK	5to5	-	3549	NA	0	29	68	29
P-0002866-T01-IM3	SOMATIC	JAK3	JAK3	19	19	17950183	17950950	Intron of JAK3(-): 103bp after exon 10	Intron of JAK3(-): 89bp after exon 9	GRCh37	DELETION		IMPRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	767	NA	0	14	0	20
P-0002866-T01-IM3	SOMATIC	EYA2	JAK3	20	19	45749808	17949907	Intron of EYA2(+): 22Kb before exon 10	Intron of JAK3(-): 379bp after exon 10	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (JAK3-EYA2)	0	NA	0	9	15	8
P-0002894-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39879331	42868377	Intron of ERG(-): 62Kb before exon 4	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2989046	NA	1	22	29	24
P-0000260-T01-IM3	SOMATIC	BAP1	PHF7	3	3	52436429	52446090	Exon 17 of BAP1(-)	5-UTR of PHF7(+): 806bp before coding start	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	-	9661	NA	0	11	22	9
P-0001272-T01-IM3	SOMATIC	KDM6A	KDM6A	X	X	44931307	44937708	Intron of KDM6A(+): 2Kb after exon 17	Exon 19 of KDM6A(+)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	6401	NA	0	11	27	9
P-0000532-T02-IM5	SOMATIC	KIAA1024	IDH2	15	15	79893257	90627508	IGR: 168Kb before KIAA1024(+)	Exon 11 of IDH2(-)	GRCh37	INVERSION	IDH2 (NM_002168) Rearrangement : c.1349_chr15:g.79893257inv	PRECISE		MANUAL_OK	5to5	-	10734251	NA	0	36	52	35
P-0000532-T02-IM5	SOMATIC	PDE1C	FH	7	1	31926696	241682866	Intron of PDE1C(-): 6Kb before exon 4	Intron of FH(-): 25bp after exon 1	GRCh37	TRANSLOCATION	FH (NM_000143) - PDE1C (NM_001191058) Rearrangement : t(1;7)(1q43;7p14.3)(chr1:g.241682866::chr7:g.31926696)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (FH-PDE1C)	0	NA	0	102	26	110
P-0003293-T01-IM5	SOMATIC	PPFIBP1	MLL2	12	12	27827328	49432493	Intron of PPFIBP1(+): 174bp after exon 17	Exon 34 of MLL2(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (MLL2-PPFIBP1)	21605165	NA	0	34	67	34
P-0003293-T01-IM5	SOMATIC	MED12	MED12	X	X	70350171	70357284	Intron of MED12(+): 107bp after exon 28	Intron of MED12(+): 51bp after exon 39	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 11 exons: in frame	7113	NA	0	20	16	20
P-0002841-T01-IM3	SOMATIC	BCAS3	BRIP1	17	17	58855288	59853693	Intron of BCAS3(+): 30Kb before exon 7	Intron of BRIP1(-): 69bp after exon 14	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Antisense fusion	998405	NA	0	30	41	34
P-0001664-T01-IM3	SOMATIC	SPEN	SPEN	1	1	16202161	16202892	Intron of SPEN(+): 536bp before exon 3	Exon 3 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) intragenic deletion: c.405-536_c.600del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	731	NA	0	18	60	62
P-0001664-T01-IM3	SOMATIC	ARID1A	ARID1A	1	1	27100821	27103139	Exon 18 of ARID1A(+)	Intron of ARID1A(+): 941bp after exon 19	GRCh37	DELETION	ARID1A (NM_006015) intragenic deletion: c.4103_c.5124+941del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2318	NA	0	43	61	51
P-0001664-T01-IM3	SOMATIC	LATS1	LATS1	6	6	149983232	149990542	Exon 8 of LATS1(-)	Intron of LATS1(-): 7Kb after exon 7	GRCh37	DELETION	LATS1 (NM_004690) intragenic deletion: c.3026_c.2883+6854del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	7310	NA	0	36	57	46
P-0003402-T01-IM5	SOMATIC	MTAP	CDKN2A	9	9	21883147	21994235	IGR: 17Kb after MTAP(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	111088	NA	0	28	60	30
P-0003383-T01-IM5	SOMATIC	ALK	EML4	2	2	29447572	42525071	Intron of ALK(-): 755bp after exon 19	Intron of EML4(+): 2Kb after exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13077499	NA	0	45	55	42
P-0002359-T01-IM3	SOMATIC	KDR	CAMK2D	4	4	55956197	114563085	Exon 23 of KDR(-)	Intron of CAMK2D(-): 20Kb after exon 3	GRCh37	DELETION	CAMK2D (NM_001221) and KDR (NM_002253) deletion (58606888bp):  CAMK2D:c.220+19784_KDR:c.3118del	PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (CAMK2D-KDR)	58606888	NA	0	9	18	6
P-0003038-T01-IM5	SOMATIC	POLD1	LILRB1	19	19	50905327	55144288	Exon 5 of POLD1(+)	Intron of LILRB1(+): 77bp after exon 6	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (LILRB1-POLD1)	4238961	NA	0	15	26	8
P-0003038-T01-IM5	SOMATIC	MET	ST7	7	7	116435964	116718087	Exon 21 of MET(+)	Intron of ST7(+): 22Kb before exon 2	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ST7-MET)	282123	NA	0	5	7	5
P-0003038-T01-IM5	SOMATIC	NBN	CALB1	8	8	90976743	91074786	Intron of NBN(-): 8bp before exon 8	Intron of CALB1(-): 542bp after exon 9	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (CALB1-NBN)	98043	NA	0	54	78	58
P-0003602-T02-IM5	SOMATIC	NCOR1	PIGL	17	17	16001900	16196689	Intron of NCOR1(-): 90bp before exon 21	Intron of PIGL(+): 7Kb before exon 3	GRCh37	DELETION	c.2691-90:NCOR1_c.336-6513:PIGLdel	PRECISE		MANUAL_OK	3to5	-	194789	NA	0	7	15	7
P-0003602-T02-IM5	SOMATIC	GGNBP2	PPM1D	17	17	34900636	58678184	Promoter of GGNBP2(+): 168bp from tx start	Exon 1 of PPM1D(+)	GRCh37	INVERSION	None	IMPRECISE		MANUAL_OK	5to5	-	23777548	NA	0	19	0	19
P-0003602-T02-IM5	SOMATIC	RPRML	PPM1D	17	17	45070123	58678151	IGR: 15Kb before RPRML(-)	Exon 1 of PPM1D(+)	GRCh37	INVERSION	chr17:g.45070123_c.376:PPM1Dinv	PRECISE		MANUAL_OK	5to5	-	13608028	NA	0	11	29	8
P-0003144-T01-IM5	SOMATIC	TERT	ZNF595	5	4	1295123	53244	5-UTR of TERT(-): 19bp before coding start	5-UTR of ZNF595(+): 139bp before coding start	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Transcript fusion (ZNF595-TERT)	0	NA	0	25	51	25
P-0003234-T01-IM5	SOMATIC	DOT1L	DOT1L	19	19	2213611	2215828	Exon 17 of DOT1L(+)	Intron of DOT1L(+): 452bp before exon 20	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2217	NA	0	8	32	10
P-0002520-T01-IM3	SOMATIC	DIS3	ELTD1	13	1	73355733	79493199	Intron of DIS3(-): 10bp after exon 1	IGR: 21Kb after ELTD1(-)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	69	29
P-0003813-T01-IM5	SOMATIC	ROS1	ROS1	6	6	117683436	117686873	Intron of ROS1(-): 330bp after exon 21	Exon 19 of ROS1(-)	GRCh37	DUPLICATION	ROS1 (NM_002944) rearrangement: c.2844_3381+330dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3437	NA	0	54	94	69
P-0002016-T01-IM3	SOMATIC	FGFR3	FGFR3	4	4	1807744	1809098	Intron of FGFR3(+): 34bp before exon 14	3-UTR of FGFR3(+): 109bp after coding stop	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	-	1354	NA	0	8	18	8
P-0001443-T01-IM3	SOMATIC	KIF5B	RET	10	10	32312441	43611781	Intron of KIF5B(-): 477bp before exon 16	Intron of RET(+): 251bp before exon 12	GRCh37	INVERSION	None	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (RET-KIF5B)	11299340	NA	0	32	50	52
P-0003249-T01-IM5	SOMATIC	NOTCH2	PDE4DIP	1	1	120466183	145045804	Intron of NOTCH2(-): 77bp after exon 26	Intron of PDE4DIP(-): 25Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (PDE4DIP-NOTCH2)	24579621	NA	0	33	58	34
P-0004221-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39803847	42868025	Intron of ERG(-): 8Kb before exon 5	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion  (TMPRSS2 exon 2 fused to ERG exon 3):  c.127-1520:TMPRSS2_c.237-8364:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3064178	NA	0	13	15	14
P-0001151-T01-IM3	SOMATIC	RET	NCOA4	10	10	43611645	51589150	Intron of RET(+): 387bp before exon 12	Intron of NCOA4(+): 75bp before exon 11	GRCh37	DUPLICATION	RET (NM_020630) - NCOA4 (NM_005437) Duplication : c.2137-387_c.1840-75dup	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (NCOA4-RET)	7977505	NA	0	14	27	16
P-0004121-T01-IM5	SOMATIC	VWA3B	INPP4A	2	2	98908378	99193528	Intron of VWA3B(+): 1Kb after exon 23	Exon 25 of INPP4A(+)	GRCh37	DUPLICATION	INPP4A(NM_001134224) - VWA3B (NM_144992) Rearrangement : c.2723:INPP4A_c.3157+1293:VWA3Bdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (INPP4A-VWA3B)	285150	NA	0	29	62	33
P-0001437-T01-IM3	SOMATIC	ROS1	CD74	6	5	117649412	149783504	Intron of ROS1(-): 1Kb after exon 32	Intron of CD74(-): 629bp before exon 7	GRCh37	TRANSLOCATION	None	PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (CD74-ROS1)	0	NA	0	10	12	0
P-0004492-T01-IM5	SOMATIC	ERBB3	CREG1	12	1	56486697	167500617	Intron of ERBB3(+): 73bp before exon 11	IGR: 10Kb before CREG1(-)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement : t(1;12)(1q24.2;12q13.2)(chr1:g.167500617::chr12:g.56486697)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	13	13
P-0003125-T01-IM5	SOMATIC	KIF5B	RET	10	10	32315549	43611581	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 451bp before exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (RET-KIF5B)	11296032	NA	0	30	48	64
P-0003125-T01-IM5	SOMATIC	KIF5B	RET	10	10	32315561	43611584	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 448bp before exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11296023	NA	0	35	59	64
P-0004548-T01-IM5	SOMATIC	TSC2	MLST8	16	16	2126526	2252844	Exon 25 of TSC2(+)	Promoter of MLST8(+): 3Kb from tx start	GRCh37	DELETION	TSC2  (NM_000548) - MLST8(NM_001199173) Rearrangement : c.2777:TSC2_c.-2695:MLST8del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (TSC2-MLST8)	126318	NA	0	61	64	60
P-0000253-T02-IM5	SOMATIC	EWSR1	FLI1	22	11	29685870	128664485	Intron of EWSR1(+): 532bp before exon 9	Intron of FLI1(+): 11Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1(NM_013986)-FLI1(NM_002017) Fusion (EWSR1 exon 9 fused to FLI1 6)  :  t(22;11)(22q12.2.13;11q24.3)(chr22:g.29685870::chr11:g.128664485)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	27	17	27
P-0002990-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39880577	42869167	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 879bp after exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2988590	NA	0	11	21	13
P-0001615-T01-IM3	SOMATIC	BCOR	ZC3H7B	X	22	39930318	41742072	Exon 5 of BCOR(-)	Exon 14 of ZC3H7B(+)	GRCh37	TRANSLOCATION	BCOR (NM_001123385) - ZC3H7B (NM_017590) Translocation :  t(X;22)(p11.4;q13.2)(chrX:c.3146::chr22:c.1525)	PRECISE		AUTO_OK	5to5	Protein fusion: mid-exon (BCOR-ZC3H7B)	0	NA	0	39	76	40
P-0000379-T02-IM3	SOMATIC	EWSR1	NR4A3	22	9	29692812	102590044	Intron of EWSR1(+): 454bp after exon 11	Intron of NR4A3(+): 279bp before exon 2	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-NR4A3)	0	NA	0	12	12	0
P-0004477-T01-IM5	SOMATIC	BRAF	AGK	7	7	140495405	141265443	Intron of BRAF(-): 1Kb before exon 8	Intron of AGK(+): 10Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion ( AGK exons 1 to 2 and  BRAF exons 8 to 18): c.101+10076:AGK_c.981-1138:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGK-BRAF)	770038	NA	0	11	12	11
P-0002778-T01-IM3	SOMATIC	BMPR1B	TET2	4	4	96025687	106156370	Exon 4 of BMPR1B(+)	Exon 3 of TET2(+)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	10130683	NA	0	19	40	9
P-0002778-T01-IM3	SOMATIC	TET2	SEC24B	4	4	106156519	110351841	Exon 3 of TET2(+)	IGR: 3Kb before SEC24B(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	4195322	NA	0	28	61	32
P-0002778-T01-IM3	SOMATIC	TET2	PAPSS1	4	4	106156573	108499812	Exon 3 of TET2(+)	IGR: 35Kb before PAPSS1(-)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	-	2343239	NA	0	13	30	15
P-0003446-T01-IM5	SOMATIC	ALK	EML4	2	2	29446534	42523253	Intron of ALK(-): 140bp before exon 20	Intron of EML4(+): 597bp after exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13076719	NA	0	49	56	77
P-0002296-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39867925	42877394	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion :  c.55+2483:TMPRSS2_c.18+2362:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3009469	NA	0	5	16	5
P-0002296-T01-IM3	SOMATIC	FOXP1	FOXP1	3	3	71027116	71377073	Exon 15 of FOXP1(-)	5-UTR of FOXP1(-): 130Kb before coding start	GRCh37	DELETION	FOXP1 (NM_001244814) Deletion : c.1211_c.-72-28042del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	349957	NA	0	20	40	26
P-0003160-T01-IM5	SOMATIC	RERGL	PIK3C2G	12	12	17542340	18446790	IGR: 691Kb before RERGL(-)	Intron of PIK3C2G(+): 45bp before exon 5	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	904450	NA	0	13	30	13
P-0003177-T01-IM5	SOMATIC	BICC1	FGFR2	10	10	60454839	123242188	Intron of BICC1(+): 7Kb before exon 3	Intron of FGFR2(-): 497bp before exon 17	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62787349	NA	0	21	42	21
P-0001909-T01-IM3	SOMATIC	NOTCH2	NOTCH2	1	1	120510099	120512418	Exon 8 of NOTCH2(-)	Intron of NOTCH2(-): 51bp before exon 6	GRCh37	DELETION	NOTCH2 (NM_024408) Deletion: c.875-51_c.1410del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	2319	NA	0	11	43	14
P-0000609-T01-IM3	SOMATIC	EWSR1	WT1	22	11	29684384	32417543	Intron of EWSR1(+): 211bp before exon 7	Intron of WT1(-): 260bp after exon 7	GRCh37	TRANSLOCATION		IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	5	0	5
P-0002149-T02-IM3	SOMATIC	ERG	TMPRSS2	21	21	39867805	42868376	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion :  c.126+1670:TMPRSS2_c.18+2482:ERGdel	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3000571	NA	0	14	20	14
P-0003597-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858593	42871994	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1878:TMPRSS2_c.18+11694:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3013401	NA	0	59	56	66
P-0003364-T01-IM5	SOMATIC	XPO1	XPO1	2	2	61709599	61717589	Exon 23 of XPO1(-)	Intron of XPO1(-): 188bp after exon 17	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	7990	NA	0	10	39	20
P-0001290-T01-IM3	SOMATIC	BLM	BLM	15	15	91301073	91304368	Intron of BLM(+): 2Kb before exon 6	Exon 7 of BLM(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	3295	NA	0	23	33	26
P-0004335-T01-IM5	SOMATIC	STK11	STK11	19	19	1217895	1220540	Intron of STK11(+): 521bp before exon 2	Intron of STK11(+): 36bp after exon 4	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-521_597+36del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	2645	NA	0	7	5	7
P-0001086-T01-IM3	SOMATIC	PARK2	PARK2	6	6	161781199	161785199	Exon 11 of PARK2(-)	Intron of PARK2(-): 4Kb before exon 11	GRCh37	DELETION	PARK2 (NM_004562) intragenic deletion: c.1168-3962_1206del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	4000	NA	0	15	14	14
P-0004433-T01-IM5	SOMATIC	RNF43	BCAS3	17	17	56440006	59452393	Exon 6 of RNF43(-)	Intron of BCAS3(+): 7Kb after exon 23	GRCh37	INVERSION	RNF43 (NM_017763) Rearrangement : c.586:RNF43_chr17.g.59452393inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (BCAS3-RNF43)	3012387	NA	0	33	41	33
P-0004681-T01-IM5	SOMATIC	SRC	SFRS6	20	20	36014598	42113618	Intron of SRC(+): 21bp after exon 5	IGR: 27Kb before SFRS6(+)	GRCh37	DELETION	SRC (NM_198291) rearrangement : c.350+21:SRC_chr20:g.42113618del	PRECISE		MANUAL_OK	3to5	-	6099020	NA	0	15	21	15
P-0004681-T01-IM5	SOMATIC	EWSR1	RASL10A	22	22	29689443	29715368	Intron of EWSR1(+): 848bp after exon 10	IGR: 6Kb before RASL10A(-)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement : c.1179+848:EWSR1_chr22:g.29715368del	PRECISE		MANUAL_OK	3to5	-	25925	NA	0	9	17	9
P-0003381-T01-IM5	SOMATIC	MYOD1	INCENP	11	11	17742745	61911103	Intron of MYOD1(+): 57bp before exon 3	Intron of INCENP(+): 1Kb before exon 11	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (INCENP-MYOD1)	44168358	NA	0	36	34	36
P-0003381-T01-IM5	SOMATIC	MLL	USP2	11	11	118353363	119240539	Intron of MLL(+): 153bp after exon 8	Intron of USP2(-): 3Kb after exon 2	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (MLL-USP2)	887176	NA	0	9	12	8
P-0003381-T01-IM5	SOMATIC	MYOD1	LRRC4C	11	11	17741521	38708506	Exon 1 of MYOD1(+)	IGR: 1Mb before LRRC4C(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	20966985	NA	0	88	44	87
P-0004130-T01-IM5	SOMATIC	SYK	SYK	9	9	93627431	93632205	Intron of SYK(+): 52bp after exon 6	Intron of SYK(+): 3Kb after exon 7	GRCh37	DELETION	SYK(NM_003177) Rearrangement : c.846+52_915+2724del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	4774	NA	0	9	21	10
P-0002075-T01-IM3	SOMATIC	FLG2	RIT1	1	1	152308085	155874218	IGR: 13Kb before FLG2(-)	Exon 5 of RIT1(-)	GRCh37	DELETION	RIT1 (NM_006912) Deletion : c.313_g.152308085del	PRECISE		MANUAL_OK	3to5	-	3566133	NA	0	21	39	23
P-0003519-T01-IM5	SOMATIC	DYRK1A	TMPRSS2	21	21	38896651	42874243	IGR: 9Kb after DYRK1A(+)	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	INVERSION	chr21:g.38896651_c.56-4127:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3977592	NA	0	18	28	17
P-0003519-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39974468	42873990	5-UTR of ERG(-): 27Kb before coding start	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	c.-149-17599:ERG_c.56-3874:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2899522	NA	0	27	40	28
P-0000732-T01-IM3	SOMATIC	ALK	EML4	2	2	29447537	42498669	Intron of ALK(-): 790bp after exon 19	Intron of EML4(+): 7Kb after exon 5	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13051132	NA	0	17	34	15
P-0001845-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39927500	42867131	Intron of ERG(-): 20Kb after exon 3	Intron of TMPRSS2(-): 626bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (2939631bp):  (TMRPSS2:c.127-626_ERG:c.39+20086del)	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2939631	NA	0	16	23	19
P-0001141-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39850233	42878671	Intron of ERG(-): 20Kb after exon 1	Intron of TMPRSS2(-): 1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Deletion (3028438bp):  (TMRPSS2:c.55+1206_ERG:c.18+20054del)	PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3028438	NA	0	29	39	31
P-0003511-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39895178	42878695	Intron of ERG(-): 52Kb after exon 3	Intron of TMPRSS2(-): 1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.39+52408:ERG_c.55+1182:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2983517	NA	0	26	24	23
P-0003511-T02-IM5	SOMATIC	CDK6	SAMD9	7	7	92462548	92656964	Exon 2 of CDK6(-)	IGR: 72Kb before SAMD9(-)	GRCh37	INVERSION	CDK6 (NM_001145306) rearrangement: c.90:CDK6_chr7:g.92656964inv	PRECISE		MANUAL_OK	5to5	-	194416	NA	0	26	30	26
P-0002377-T01-IM3	SOMATIC	MDM2	CPM	12	12	69230576	69382694	Intron of MDM2(+): 47bp after exon 10	IGR: 26Kb after CPM(-)	GRCh37	DELETION	MDM2 (NM_002392) deletion (152118bp) : MDM2:c.918+47_chr12:g.69382694del	PRECISE		MANUAL_OK	3to5	-	152118	NA	0	8	25	8
P-0003971-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39833695	42875798	Intron of ERG(-): 16Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fuses with ERG exons 4-10): c.55+4079:TMPRSS2_c.19-16151:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3042103	NA	0	6	21	6
P-0002840-T01-IM3	SOMATIC	GLRA2	KDM5C	X	X	14725392	53222372	Intron of GLRA2(+): 16Kb after exon 8	Exon 26 of KDM5C(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (KDM5C-GLRA2)	38496980	NA	0	5	4	5
P-0001214-T01-IM3	SOMATIC	EWSR1	ATF1	22	12	29685690	51195854	Intron of EWSR1(+): 712bp before exon 9	Intron of ATF1(+): 6Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - ATF1 (NM_005171)  Reciprocal Translocation:  t(22;12)(q12.2;q13.12)(chr22:c.974+915::chr12:c.194+6062)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-ATF1)	0	NA	0	11	25	0
P-0002709-T01-IM3	SOMATIC	SMARCA4	LDLR	19	19	11101928	11213234	Exon 7 of SMARCA4(+)	Intron of LDLR(+): 106bp before exon 3	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (LDLR-SMARCA4)	111306	NA	0	35	36	29
P-0003216-T01-IM5	SOMATIC	HIST1H2BC	HIST1H2BD	6	6	26116007	26158644	IGR: 8Kb before HIST1H2BC(-)	Exon 1 of HIST1H2BD(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	42637	NA	0	10	18	11
P-0003535-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39886811	42873785	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_001136154) fusion : c.56-3669:TMPRSS2_c.39+60775:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2986974	NA	1	67	93	160
P-0003100-T01-IM5	SOMATIC	NPAT	ATM	11	11	108066234	108159617	Intron of NPAT(-): 1Kb before exon 3	Intron of ATM(+): 87bp before exon 28	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	93383	NA	0	10	25	18
P-0003803-T01-IM5	SOMATIC	DACH1	DIS3	13	13	72218947	73348090	Intron of DACH1(-): 14Kb before exon 3	Exon 7 of DIS3(-)	GRCh37	DUPLICATION	DACH1 (NM_080759) - DIS3 (NM_014953) rearrangement :    c.964+36980:DACH1_c.1095:DIS3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DACH1-DIS3)	1129143	NA	0	5	14	5
P-0003390-T01-IM5	SOMATIC	LEMD3	POLE	12	12	65574555	133225786	Intron of LEMD3(+): 10Kb after exon 1	Intron of POLE(-): 106bp after exon 31	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (POLE-LEMD3)	67651231	NA	0	5	3	5
P-0003390-T01-IM5	SOMATIC	RAB11FIP4	POLE	17	12	29822054	133225853	Intron of RAB11FIP4(+): 23Kb before exon 4	Intron of POLE(-): 39bp after exon 31	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (POLE-RAB11FIP4)	0	NA	0	11	24	11
P-0003722-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27060996	27100790	Intron of ARID1A(+): 2Kb after exon 4	Intron of ARID1A(+): 30bp before exon 18	GRCh37	DELETION	c.1920+1713_c.4102-30:ARID1Adel	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons: in frame	39794	NA	0	64	49	72
P-0003722-T01-IM5	SOMATIC	TNS3	EGFR	7	7	46674498	55259561	IGR: 640Kb before TNS3(-)	Exon 21 of EGFR(+)	GRCh37	INVERSION	TNS3 (NM_022748) - EGFR (NM_005228) inversion (8585063bp) : g.46674498:TNS3_c.2619:EGFRinv	PRECISE		MANUAL_OK	3to3	-	8585063	NA	0	43	45	43
P-0002334-T01-IM3	SOMATIC	PBRM1	PBRM1	3	3	52637641	52717585	Exon 18 of PBRM1(-)	5-UTR of PBRM1(-): 4Kb before coding start	GRCh37	DELETION	PBRM1 (NM_018313) Deletion : c.2675_c.-13+2180del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	79944	NA	0	8	22	10
P-0002066-T01-IM3	SOMATIC	AKT3	AKT3	1	1	244006391	244033316	Intron of AKT3(-): 36bp after exon 1	IGR: 27Kb after AKT3(-)	GRCh37	DUPLICATION	AKT3 (NM_005465) Duplication : g.244033316_c.46+36dup	PRECISE		MANUAL_OK	5to3	-	26925	NA	0	37	62	51
P-0005741-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32929497	32964170	Intron of BRCA2(+): 72bp after exon 14	Intron of BRCA2(+): 5Kb before exon 25	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement :  c.7435+72_9257-4656del	PRECISE		MANUAL_OK	3to5	Deletion of 10 exons: in frame	34673	NA	0	81	75	80
P-0001725-T01-IM3	SOMATIC	EWSR1	ERG	22	21	29684501	39759762	Intron of EWSR1(+): 94bp before exon 7	Intron of ERG(-): 3Kb after exon 10	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - ERG (NM_182918) Translocation:  t(22;21)(q12.2;q22.2)(chr22:c.794-94::chr21:c.919+3155)	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EWSR1-ERG)	0	NA	0	17	22	17
P-0007772-T03-IM5	SOMATIC	NTRK3	ETV6	15	12	88600844	12020257	Intron of NTRK3(-): 25Kb before exon 13	Intron of ETV6(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) reciprocal fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20) : t(12;15)(p13.2;q25.3)(chr12:g.12020257::chr15:g.88600844 )	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	19	21	19
P-0002250-T01-IM3	SOMATIC	PLK2	PLK2	5	5	57748349	57752227	IGR: 1Kb before PLK2(-)	Intron of PLK2(-): 92bp after exon 9	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	-	3878	NA	0	9	32	24
P-0000719-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29688302	128673072	Intron of EWSR1(+): 144bp after exon 9	Intron of FLI1(+): 2Kb before exon 6	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	6	10	1
P-0013114-T01-IM5	SOMATIC	THBS2	VTCN1	6	1	169564182	117753496	IGR: 52Kb before THBS2(-)	5-UTR of VTCN1(-): 19bp before coding start	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;6)(p13.1;q27)(chr1:g.117753496::chr6:g.169564182)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	48	0	44
P-0012394-T01-IM5	SOMATIC	ARRDC5	INSR	19	19	4878501	7267247	IGR: 12Kb before ARRDC5(-)	Intron of INSR(-): 109bp after exon 2	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.652+109:INSR_chr19:g.4878501	PRECISE		MANUAL_OK	5to5	-	2388746	NA	0	43	42	40
P-0006226-T02-IM5	SOMATIC	RET	NCOA4	10	10	43611893	51583193	Intron of RET(+): 139bp before exon 12	Intron of NCOA4(+): 254bp after exon 8	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion : c.762+254:NCOA4_c.2137-139:RETdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (NCOA4-RET)	7971300	NA	0	102	90	143
P-0010260-T01-IM5	SOMATIC	NRG1	CD74	8	5	32546211	149783390	Intron of NRG1(+): 39Kb before exon 3	Intron of CD74(-): 515bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) fusion (CD74 exons 1-6 fused in frame with NRG1 exons 3-13): t(5;8)(q32;p12)(chr5:g.149783390::chr8:g.32546211)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CD74-NRG1)	0	NA	0	15	8	15
P-0014397-T01-IM6	SOMATIC	NCRNA00158	FAT1	21	4	25402034	187518320	IGR: 1Mb before NCRNA00158(-)	Exon 25 of FAT1(-)	GRCh37	TRANSLOCATION	FAT1(NM_005245) rearrangement: t(4:21)(q35.2;q21.2)(chr4:g.187518320::chr21:g.25402034)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	23	15	23
P-0014956-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2984218	3014816	Intron of CARD11(-): 47bp before exon 5	5-UTR of CARD11(-): 17Kb before coding start	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.-125-16551_c.359-47del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	30598	NA	0	5	15	5
P-0014969-T01-IM6	SOMATIC	CDK5RAP2	BRAF	9	7	123269531	140493700	Intron of CDK5RAP2(-): 11Kb after exon 12	Intron of BRAF(-): 408bp after exon 8	GRCh37	TRANSLOCATION	BRAF (NM_004333) - CDK5RAP2 (NM_018249) Rearrangement : t(7;9)(q34;q33.3)(chr7:g.140493700::chr9:g.123269531)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (BRAF-CDK5RAP2)	0	NA	0	26	8	26
P-0015010-T01-IM6	SOMATIC	APC	SRP19	5	5	112176261	112190339	Exon 16 of APC(+)	IGR: 7Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4970_g.112190339del	PRECISE		MANUAL_OK	3to5	-	14078	NA	0	17	29	16
P-0013954-T01-IM5	SOMATIC	FGFR3	WHSC1	4	4	1808929	1961471	Exon 18 of FGFR3(+)	Intron of WHSC1(+): 4bp after exon 19	GRCh37	DUPLICATION	WHSC1 (NM_001042424)  - FGFR3 (NM_000142)  rearrangement: c.3255+4:WHSC1_c.2361:FGFR3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (WHSC1-FGFR3)	152542	NA	0	12	21	12
P-0006793-T02-IM6	SOMATIC	TP53	TP53	17	17	7579438	7581047	Exon 4 of TP53(-)	5-UTR of TP53(-): 1Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) Rearrangement: c.-28-1107_c.249del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1609	NA	0	56	55	56
P-0015035-T01-IM6	SOMATIC	RECK	EGFL7	9	9	36123517	139563044	3-UTR of RECK(+): 475bp after coding stop	Exon 4 of EGFL7(+)	GRCh37	INVERSION	EGFL7 (NM_201446) rearrangement: chr9:g.36123517_c.116:EGFL7inv	IMPRECISE		MANUAL_OK	5to5	-	103439527	NA	0	16	0	16
P-0014544-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143084505	143114339	Intron of INPP4B(-): 3Kb before exon 18	Exon 16 of INPP4B(-)	GRCh37	DELETION	INPP4B (NM_001101669) Rearrangement : c.1082_c.1360-2791del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	29834	NA	0	18	23	18
P-0008577-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89383400	89500746	Exon 3 of ANKRD11(-)	5-UTR of ANKRD11(-): 117Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.-144-15970_28del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	117346	NA	0	24	40	21
P-0008592-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39888464	42877519	Intron of ERG(-): 59Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099 ) - ERG(NM_004449)  Fusion  (TMPRSS2 exon 1 fused with ERG exons 4-11) : c.55+2358:TMPRSS2_c.39+59122:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2989055	NA	0	9	24	9
P-0008567-T01-IM5	SOMATIC	PRKAR2B	BRAF	7	7	106693722	140486416	Intron of PRKAR2B(+): 8Kb after exon 1	Intron of BRAF(-): 932bp after exon 9	GRCh37	INVERSION	PRKAR2B (NM_002736) - BRAF (NM_004333) rearrangement: c.307+8063:PRKAR2B_c.1177+932:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (PRKAR2B-BRAF)	33792694	NA	0	23	33	23
P-0008563-T01-IM5	SOMATIC	APC	APC	5	5	112134112	112170817	Intron of APC(+): 3Kb before exon 8	Exon 15 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement:  c.730-2864_1913inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	36705	NA	0	27	25	26
P-0012119-T01-IM5	SOMATIC	RAD52	ERC1	12	12	1036393	1221105	Exon 6 of RAD52(-)	Intron of ERC1(+): 276bp before exon 6	GRCh37	DELETION	RAD52 (NM_134424) -ERC1 (NM_178040) Rearrangement : c.385:RAD52_c.1318-276:ERC1	PRECISE		MANUAL_OK	3to5	-	184712	NA	0	16	24	16
P-0006779-T01-IM5	SOMATIC	INSR	AKAP8	19	19	7142856	15462870	Exon 12 of INSR(-)	IGR: 1Kb before AKAP8(-)	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.2513:INSR_chr19:g.15462870inv	PRECISE		MANUAL_OK	3to3	-	8320014	NA	0	41	48	39
P-0010202-T01-IM5	SOMATIC	PTCH1	PPP3R2	9	9	98209605	104623233	Exon 23 of PTCH1(-)	IGR: 269Kb before PPP3R2(-)	GRCh37	DELETION	PTCH1 (NM_000264) rearrangement : c.3933:PTCH1_chr9:g.104623233del	PRECISE		MANUAL_OK	3to5	-	6413628	NA	0	12	14	12
P-0014864-T01-IM6	SOMATIC	ARID2	SPATS2L	12	2	46298693	201278089	Intron of ARID2(+): 24bp before exon 21	Intron of SPATS2L(+): 947bp after exon 4	GRCh37	TRANSLOCATION	ARID2 (NM_152641) - SPATS2L (NM_001100423) rearrangement: t(2;12)(q33.1;q12)(chr2:g.201278089::chr12:g.46298693)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (SPATS2L-ARID2)	0	NA	0	9	0	8
P-0003063-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11123236	11134227	Intron of SMARCA4(+): 389bp before exon 15	Exon 19 of SMARCA4(+)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	10991	NA	0	36	34	36
P-0003055-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32906713	32941266	Exon 10 of BRCA2(+)	Intron of BRCA2(+): 3Kb before exon 19	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	34553	NA	0	9	18	9
P-0010099-T01-IM5	SOMATIC	CDH1	CMIP	16	16	68853207	81431871	Exon 11 of CDH1(+)	IGR: 47Kb before CMIP(+)	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.1590:CDH1_chr16:g.81431871inv	PRECISE		MANUAL_OK	5to5	-	12578664	NA	0	12	20	12
P-0001532-T01-IM3	SOMATIC	ALK	EML4	2	2	29447553	42525673	Intron of ALK(-): 774bp after exon 19	Intron of EML4(+): 3Kb before exon 13	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13078120	NA	0	102	70	115
P-0005701-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55241219	55269330	Intron of EGFR(+): 395bp before exon 18	Intron of EGFR(+): 98bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement : c.2062-395_c.3115-98dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	28111	NA	0	3	8	3
P-0005701-T01-IM5	SOMATIC	EGFR	SEPT14	7	7	55269490	55870118	Intron of EGFR(+): 15bp after exon 26	Intron of SEPT14(-): 3Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) rearrangement  : c.3162+15:EGFR_c.1119+2833:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EGFR-SEPT14)	600628	NA	0	102	128	144
P-0013971-T01-IM5	SOMATIC	DOT1L	DOT1L	19	19	2185997	2194572	Intron of DOT1L(+): 69bp after exon 3	Exon 7 of DOT1L(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) Rearrangement : c.200+69_c.647dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	8575	NA	0	44	53	44
P-0008877-T01-IM5	SOMATIC	PTPRT	PTPRT	20	20	40844524	41419815	Intron of PTPRT(-): 16Kb before exon 16	Intron of PTPRT(-): 20bp after exon 3	GRCh37	DELETION	PTPRT (NM_133170) Rearrangement :  c.486+20_c.2400-16496del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons: out of frame	575291	NA	0	6	10	6
P-0009592-T01-IM5	SOMATIC	RET	NCOA4	10	10	43611143	51584711	Intron of RET(+): 889bp before exon 12	Exon 9 of NCOA4(+)	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-9 with RET exons 12=20: c.872:NCOA4_c.2136+621:RETdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NCOA4-RET)	7973568	NA	0	71	73	71
P-0000739-T02-IM5	SOMATIC	EIF3H	RAD21	8	8	117760095	117862786	Intron of EIF3H(-): 8Kb after exon 1	Intron of RAD21(-): 71bp after exon 12	GRCh37	DELETION	RAD21 (NM_006265) - EIF3H (NM_003756) rearrangement: c.1620+71:RAD21_c.132+7810:EIF3Hdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (RAD21-EIF3H)	102691	NA	0	19	15	19
P-0012368-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39851683	42869637	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 409bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918)  fusion (TMPRSS2 exons 1-2  with ERG exons 2-10): c.126+409:TMPRSS2_c.18+18604:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3017954	NA	0	53	38	50
P-0010904-T01-IM5	SOMATIC	ZNF335	GNAS	20	20	44592701	57485137	Intron of ZNF335(-): 72bp before exon 8	Intron of GNAS(+): 1bp after exon 11	GRCh37	INVERSION	GNAS (NM_000516) -  ZNF335 (NM_022095) Rearrangement :  c.970+1:GNAS_c.1103-72:ZNF335inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (GNAS-ZNF335)	12892436	NA	0	66	55	64
P-0008709-T01-IM5	SOMATIC	PRB2	ETV6	12	12	11570805	11992236	IGR: 26Kb before PRB2(-)	Exon 3 of ETV6(+)	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.326_chr12:g.11570805dup	PRECISE		MANUAL_OK	5to3	-	421431	NA	0	24	17	23
P-0008709-T01-IM5	SOMATIC	PDE1A	SF3B1	2	2	183386885	198283154	Intron of PDE1A(-): 118bp after exon 1	Intron of SF3B1(-): 79bp after exon 5	GRCh37	DELETION	SF3B1 (NM_012433) - PDE1A (NM_005019) rearrangement: c.495+79:SF3B1_c.101+118:PDE1Adel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SF3B1-PDE1A)	14896269	NA	0	43	36	43
P-0008709-T01-IM5	SOMATIC	MDC1	DDR1	6	6	30675598	30822725	Exon 8 of MDC1(-)	IGR: 29Kb before DDR1(+)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.2758_chr6:g.30822725dup.	PRECISE		MANUAL_OK	5to3	-	147127	NA	0	28	38	25
P-0002088-T02-IM5	SOMATIC	ERMP1	TGFBR1	9	9	5801401	101900043	Intron of ERMP1(-): 73bp before exon 11	Intron of TGFBR1(+): 98bp before exon 4	GRCh37	DELETION	TGFBR1 (NM_004612) Rearrangement : chr9:g.5801401_c.575-98:TGFBR1del	PRECISE		MANUAL_OK	3to5	-	96098642	NA	0	5	11	4
P-0006926-T02-IM5	SOMATIC	RECQL4	LRRC24	8	8	145738561	145749362	Intron of RECQL4(-): 40bp after exon 14	Intron of LRRC24(-): 132bp after exon 4	GRCh37	DELETION	LRRC24 (NM_001024678) - RECQL4 (NM_004260) rearrangement : 2464+40:RECQL4_c.607+132: LRRC24del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (LRRC24-RECQL4)	10801	NA	0	11	9	11
P-0014756-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47631836	47639595	Intron of MSH2(+): 1Kb after exon 1	Exon 4 of MSH2(+)	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.211+1295_c.688del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7759	NA	1	80	57	76
P-0010406-T01-IM5	SOMATIC	RASA1	RASA1	5	5	86679456	86685401	Intron of RASA1(+): 74bp before exon 21	Intron of RASA1(+): 57bp after exon 24	GRCh37	DUPLICATION	RASA1 (NM_002890) Rearrangement : c.2691-74_ 3060+57dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons: out of frame	5945	NA	0	8	13	8
P-0000624-T02-IM5	SOMATIC	NOVA1	NFKBIA	14	14	26301883	35870987	IGR: 613Kb before NOVA1(-)	3-UTR of NFKBIA(-): 232bp after coding stop	GRCh37	INVERSION	NFKBIA (NM_020529) Rearrangement: chr14:g.26301883_c.*232:NFKBIAinv	PRECISE		MANUAL_OK	5to5	-	9569104	NA	0	32	33	15
P-0002435-T01-IM3	SOMATIC	IGF1R	ACBD6	15	1	99452116	180399173	Exon 6 of IGF1R(+)	Intron of ACBD6(-): 142bp after exon 4	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	5to5	Protein fusion: mid-exon (ACBD6-IGF1R)	0	NA	0	7	22	7
P-0002435-T01-IM3	SOMATIC	BRIP1	BRIP1	17	17	59853727	59861458	Intron of BRIP1(-): 35bp after exon 14	Intron of BRIP1(-): 173bp after exon 11	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	7731	NA	0	41	62	49
P-0006441-T02-IM5	SOMATIC	NF1	C1GALT1	17	7	29545953	7260769	Intron of NF1(+): 70bp before exon 14	5-UTR of C1GALT1(+): 13Kb before coding start	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(7;17)(p22.1;q11.2)(chr7:g.7260769::chr17:g.29545953)	IMPRECISE		MANUAL_OK	5to3	Transcript fusion (C1GALT1-NF1)	0	NA	0	27	0	27
P-0002245-T01-IM3	SOMATIC	HEATR2	CARD11	7	7	798921	2987321	Intron of HEATR2(+): 2Kb after exon 6	Exon 3 of CARD11(-)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Antisense fusion	2188400	NA	0	7	58	28
P-0003724-T01-IM5	SOMATIC	CCDC46	FGFR2	17	10	64023428	123241923	Intron of CCDC46(-): 191bp after exon 16	Intron of FGFR2(-): 232bp before exon 17	GRCh37	TRANSLOCATION	t(17;10)(q24.1;q26.13)(chr17:g.64023428::chr10:g.123241923)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (CCDC46-FGFR2)	0	NA	0	41	63	55
P-0002796-T01-IM3	SOMATIC	FLT1	IRS2	13	13	29061657	110419477	Intron of FLT1(-): 7Kb after exon 1	Intron of IRS2(-): 11Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (IRS2-FLT1)	81357820	NA	0	19	36	21
P-0006281-T01-IM5	SOMATIC	CIC	PAFAH1B3	19	19	42799250	42800643	Exon 20 of CIC(+)	IGR: 542bp before PAFAH1B3(-)	GRCh37	INVERSION	CIC (NM_015125) rearrangement : c.4734:CIC_chr19:g.42800643inv	PRECISE		MANUAL_OK	3to3	-	1393	NA	0	13	7	12
P-0006281-T01-IM5	SOMATIC	RBM10	ZNF157	X	X	47044516	47250233	Exon 18 of RBM10(+)	Intron of ZNF157(+): 19Kb before exon 2	GRCh37	DUPLICATION	ZNF157 (NM_003446) - RBM10 (NM_001204468) rearrangement : c.2208:RBM10_c.73-19442:ZNF157dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ZNF157-RBM10)	205717	NA	0	18	18	17
P-0001317-T01-IM3	SOMATIC	ERBB2	GRB7	17	17	37883150	37901428	Exon 25 of ERBB2(+)	Intron of GRB7(+): 68bp before exon 10	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (ERBB2-GRB7)	18278	NA	0	63	92	79
P-0014143-T01-IM5	SOMATIC	TPM3	NTRK1	1	1	154138845	156844002	Intron of TPM3(-): 4Kb after exon 7	Intron of NTRK1(+): 173bp before exon 9	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3 exons 1-10 fused in-frame to NTRK1 exons 9-17): c.*1568:TPM3_c.1178-173:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (TPM3-NTRK1)	2705157	NA	0	4	75	5
P-0003870-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27052746	27088815	Intron of ARID1A(+): 3Kb before exon 2	Intron of ARID1A(+): 5bp after exon 7	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1138-3396_c.2419+5:ARID1Adup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons: out of frame	36069	NA	0	74	65	69
P-0006965-T01-IM5	SOMATIC	NTRK2	NTRK2	9	9	87563485	87565226	Exon 18 of NTRK2(+)	Intron of NTRK2(+): 2Kb after exon 18	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement : c.1873_1937+1677del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1741	NA	0	23	35	23
P-0007538-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39828183	42876973	Intron of ERG(-): 11Kb before exon 4	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 with ERG exons 2 to 10) : c.55+2904:TMPRSS2_c.19-10639:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3048790	NA	0	3	2	3
P-0005216-T01-IM5	SOMATIC	PLK2	PDE4D	5	5	57754794	58851962	Intron of PLK2(-): 18bp after exon 2	Intron of PDE4D(-): 30Kb after exon 1	GRCh37	DUPLICATION	PLK2 (NM_006622) - PDE4D (NM_001104631) Rearrangement: c.378+18_c.455+337033dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (PLK2-PDE4D)	1097168	NA	0	87	63	86
P-0001010-T02-IM5	SOMATIC	KIF5B	RET	10	10	32312744	43610863	Intron of KIF5B(-): 780bp before exon 16	Intron of RET(+): 679bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-780:KIF5B_c.2136+679:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11298119	NA	0	8	16	8
P-0006169-T01-IM5	SOMATIC	JAK1	MIR101-1	1	1	65309878	65490725	Exon 17 of JAK1(-)	IGR: 33Kb before MIR101-1(-)	GRCh37	DUPLICATION	JAK1 (NM_002227)  Rearrangement :  c.2272:JAK1_chr1:g.65490725dup	PRECISE		MANUAL_OK	5to3	-	180847	NA	0	20	36	20
P-0005452-T01-IM5	SOMATIC	AR	AR	X	X	66753057	66766119	IGR: 11Kb before AR(+)	Exon 1 of AR(+)	GRCh37	DELETION	AR (NM_000044) Rearrangement : chrX:g.66753057_c.1131:ARdel	PRECISE		MANUAL_OK	3to5	-	13062	NA	0	20	19	19
P-0010581-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156103383	156844556	Intron of LMNA(+): 811bp before exon 3	Intron of NTRK1(+): 138bp after exon 10	GRCh37	DELETION	LMNA (NM_170707) - NTRK (NM_002529) fusion (LMNA exons 1-2 fused to NTRK1 exons 11-17): c.514-811:LMNA_c.1251+138:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (LMNA-NTRK1)	741173	NA	0	25	46	13
P-0010581-T01-IM5	SOMATIC	USP34	XPO1	2	2	61695483	61753449	Intron of USP34(-): 2Kb after exon 1	Intron of XPO1(-): 106bp after exon 3	GRCh37	DELETION	XPO1(NM_003400) - USP34 (NM_014709 )Rearrangement : c.228+106:XPO1_c.43+2302:USP34del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (XPO1-USP34)	57966	NA	0	5	7	5
P-0009756-T01-IM5	SOMATIC	NOTCH4	NOTCH4	6	6	32163790	32210986	Exon 30 of NOTCH4(-)	IGR: 48Kb before NOTCH4(-)	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: chr6:g.32210986_c.5436del	PRECISE		MANUAL_OK	3to5	-	47196	NA	0	36	38	36
P-0008712-T01-IM5	SOMATIC	MIR873	PAX5	9	9	29168844	36923291	IGR: 280Kb before MIR873(-)	Intron of PAX5(-): 61bp after exon 7	GRCh37	DELETION	PAX5 (NM_016734) rearrangement: c.910+61_chr9:g.29168844del	PRECISE		MANUAL_OK	3to5	-	7754447	NA	0	12	13	12
P-0007903-T01-IM5	SOMATIC	PPM1D	EPHA6	17	3	58734016	97452596	Exon 5 of PPM1D(+)	Intron of EPHA6(+): 2Kb before exon 16	GRCh37	TRANSLOCATION	EPHA6 (NM_001080448) - PPM1D (NM_003620) rearrangement : t(3;17)(q11.2;q23.2)(chr3::g.97452596::chr17:g.58734016)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (EPHA6-PPM1D)	0	NA	0	16	0	16
P-0005931-T01-IM5	SOMATIC	MYD88	OXSR1	3	3	38181527	38217057	Intron of MYD88(+): 38bp after exon 2	Intron of OXSR1(+): 7Kb before exon 2	GRCh37	DUPLICATION	OXSR1 (NM_005109) - MYD88 (NM_002468)   Rearrangement :  c.71-7437:OXSR1_c.502+38:MYD88dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (OXSR1-MYD88)	35530	NA	0	6	13	6
P-0007343-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39882799	42869383	Intron of ERG(-): 65Kb after exon 3	Intron of TMPRSS2(-): 663bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11) : c.126+663:TMPRSS2_c.39+64787:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2986584	NA	0	4	10	4
P-0009892-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866427	42867056	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 551bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in frame with ERG exons 2-10): c.127-551:TMPRSS2_c.18+3860:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3000629	NA	0	54	28	53
P-0003353-T01-IM5	SOMATIC	RAD51C	ABCA8	17	17	56769910	66817527	Promoter of RAD51C(+): 53bp from tx start	IGR: 46Kb before ABCA8(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	10047617	NA	0	14	16	14
P-0004946-T02-IM5	SOMATIC	SDC4	ROS1	20	6	43962011	117651013	Intron of SDC4(-): 302bp before exon 3	Intron of ROS1(-): 404bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117651013::chr20:g.43962011)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (SDC4-ROS1)	0	NA	0	27	8	18
P-0014785-T01-IM6	SOMATIC	MAP2K2	CHAF1A	19	19	4097217	4403609	Intron of MAP2K2(-): 60bp after exon 8	Intron of CHAF1A(+): 798bp after exon 1	GRCh37	INVERSION	MAP2K2 (NM_030662) -  CHAF1A (NM_005483) Rearrangement : c.984+60:MAP2K2_c.52+798:CHAF1Ainv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (MAP2K2-CHAF1A)	306392	NA	0	60	42	57
P-0006602-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39835131	42867072	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 567bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-11) :c.127-567:TMPRSS2_c.40-17587:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3031941	NA	0	19	24	18
P-0007860-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265673	41266211	Intron of CTNNB1(+): 101bp after exon 2	Exon 3 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.13+101_c.208del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	538	NA	0	12	0	11
P-0010824-T01-IM5	SOMATIC	RB1	CDKN2A	13	9	48919023	21970234	Intron of RB1(+): 193bp before exon 4	Intron of CDKN2A(-): 667bp after exon 2	GRCh37	TRANSLOCATION	CDKN2Ap16INK4A (NM_000077) -RB1 (NM_000321) Rearrangement : t(9;13)(p21.3;q14.2)(chr9:g.21970234::chr13:g.48919023) CDKN2Ap14ARF (NM_058195) -RB1 (NM_000321) Rearrangement : t(9;13)(p21.3;q14.2)(chr9:g.21970234::chr13:g.48919023)	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (CDKN2A-RB1)	0	NA	0	5	3	3
P-0010824-T01-IM5	SOMATIC	KDM6A	HHIP	X	4	44969451	145331332	Exon 28 of KDM6A(+)	IGR: 236Kb before HHIP(+)	GRCh37	TRANSLOCATION	KDM6A (NM_021140) Rearrangement :  t(4;X)(q31.21.3;p11.3)(chr4:g.145331332::chrX:g.44969451)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	23	28	23
P-0012179-T01-IM5	SOMATIC	MAP2K4	MAP2K4	17	17	11973165	12001720	Intron of MAP2K4(+): 12Kb before exon 3	Intron of MAP2K4(+): 3Kb after exon 4	GRCh37	DELETION	MAP2K4 (NM_003010) Rearrangement :  c.219-11508_c.513+2709del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: out of frame	28555	NA	0	29	33	20
P-0003272-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29683976	128673862	Intron of EWSR1(+): 619bp before exon 7	Intron of FLI1(+): 1Kb before exon 6	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	11	15	41
P-0000449-T02-IM5	SOMATIC	DSCAM	TMPRSS2	21	21	41833067	42851224	Intron of DSCAM(-): 92Kb before exon 4	Intron of TMPRSS2(-): 15bp before exon 7	GRCh37	DELETION	TMPRSS2 (NM_001135099) - DSCAM (NM_001389) rearrangement: c.684-15:TMPRSS2_c.509-91895:DSCAMdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-DSCAM)	1018157	NA	0	23	0	23
P-0011363-T01-IM5	SOMATIC	ABL1	ABL1	9	9	133753810	133755196	Exon 8 of ABL1(+)	Intron of ABL1(+): 259bp before exon 9	GRCh37	DELETION	ABL1 (NM_005157) rearrangement : c.1279_1424-259del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1386	NA	0	9	16	9
P-0008945-T01-IM5	SOMATIC	TRPC6	YAP1	11	11	101401349	102033282	Intron of TRPC6(-): 26Kb before exon 2	Exon 3 of YAP1(+)	GRCh37	INVERSION	YAP1 (NM_001130145) - TRPC6 (NM_004621) Rearrangement :  c.668:YAP1_c.171-25820:TRPC6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (YAP1-TRPC6)	631933	NA	0	53	61	52
P-0002915-T01-IM3	SOMATIC	TET1	TET1	10	10	70332166	70339609	Exon 2 of TET1(+)	Intron of TET1(+): 6Kb after exon 2	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	7443	NA	0	14	13	15
P-0002915-T01-IM3	SOMATIC	NF1	NF1	17	17	29574493	29592397	Intron of NF1(+): 2Kb before exon 30	Intron of NF1(+): 40bp after exon 35	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 6 exons: in frame	17904	NA	0	21	34	29
P-0009921-T01-IM5	SOMATIC	NF1	HDAC5	17	17	29683346	42200261	Intron of NF1(+): 132bp before exon 51	5-UTR of HDAC5(-): 5Kb before coding start	GRCh37	INVERSION	NF1 (NM_001042492) -  HDAC5 (NM_001015053) rearrangement: c.-190+611:HDAC5_c.7616-132:NF1inv	PRECISE		MANUAL_OK	5to5	Transcript fusion (HDAC5-NF1)	12516915	NA	0	12	12	9
P-0003140-T01-IM5	SOMATIC	ASXL1	ASXL1	20	20	30956708	30960274	Intron of ASXL1(+): 107bp before exon 3	Intron of ASXL1(+): 3Kb after exon 3	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	3566	NA	0	15	13	15
P-0010001-T01-IM5	SOMATIC	REL	PUS10	2	2	61149495	61161803	Exon 11 of REL(+)	IGR: 6Kb before PUS10(-)	GRCh37	DELETION	REL (NM_002908) Rearrangement :  c.1685_chr2:g.61161803del	PRECISE		MANUAL_OK	3to5	-	12308	NA	0	31	39	31
P-0003805-T01-IM5	SOMATIC	NRAS	CSDE1	1	1	115256569	115268618	Exon 3 of NRAS(-)	Intron of CSDE1(-): 214bp after exon 13	GRCh37	DELETION	CSDE1 (NM_001242891) - NRAS (NM_002524)  rearrangement -  :  c.1778+214:CSDE1_c.142:NRASdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CSDE1-NRAS)	12049	NA	0	7	9	7
P-0003805-T01-IM5	SOMATIC	GLI1	ARHGAP9	12	12	57864983	57867963	Exon 11 of GLI1(+)	Intron of ARHGAP9(-): 4bp before exon 14	GRCh37	INVERSION	GLI1(NM_005269) - ARHGAP9(NM_032496) rearrangement : c.2460:GLI1_c.1784-4:ARHGAP9inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (GLI1-ARHGAP9)	2980	NA	0	41	65	41
P-0004912-T01-IM5	SOMATIC	ARID1A	WDTC1	1	1	27101204	27552578	Exon 18 of ARID1A(+)	IGR: 8Kb before WDTC1(+)	GRCh37	INVERSION	ARID1A(NM_006015) Rearrangement : c.4486:ARID1A_chr1:g.27552578inv	PRECISE		MANUAL_OK	5to5	-	451374	NA	0	29	38	27
P-0004912-T01-IM5	SOMATIC	IGSF8	SDHC	1	1	160066615	161298176	Intron of IGSF8(-): 2Kb before exon 2	Intron of SDHC(+): 10bp before exon 3	GRCh37	INVERSION	IGSF8(NM_001206665) - SDHC(NM_003001) Rearrangement :  c.65-1579:IGSF8_c.78-10:SDHCinv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (IGSF8-SDHC)	1231561	NA	0	21	25	20
P-0003009-T01-IM3	SOMATIC	SORBS2	FAT1	4	4	186816559	187542224	5-UTR of SORBS2(-): 233Kb before coding start	Exon 10 of FAT1(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (FAT1-SORBS2)	725665	NA	0	20	42	25
P-0006838-T01-IM5	SOMATIC	PIK3R3	PIK3R3	1	1	46521507	46545609	Exon 7 of PIK3R3(-)	Intron of PIK3R3(-): 705bp after exon 2	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: PIK3R3:c.215+705_c.901del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	24102	NA	0	40	37	39
P-0006838-T01-IM5	SOMATIC	STAT5A	ZNF804A	17	2	40462584	185422175	Exon 20 of STAT5A(+)	IGR: 41Kb before ZNF804A(+)	GRCh37	TRANSLOCATION	STAT5A (NM_003152) rearrangment : t(2;17)(q32.1;q21.2)(c.2282: STAT5A_g.185422175)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	28	21	27
P-0003725-T01-IM5	SOMATIC	FGFR1	CLVS1	8	8	38275811	62143239	Exon 9 of FGFR1(-)	IGR: 57Kb before CLVS1(+)	GRCh37	INVERSION	c.1359:FGFR1_g.62143239inv	PRECISE		MANUAL_OK	3to3	-	23867428	NA	0	49	65	46
P-0003768-T01-IM5	SOMATIC	MIAT	NF2	22	22	27323591	30090574	IGR: 270Kb before MIAT(+)	Intron of NF2(+): 167bp before exon 5	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: chr22:g.27323591_c.1738-167:NF2inv	PRECISE		MANUAL_OK	5to5	-	2766983	NA	0	7	12	7
P-0014954-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44941851	44944104	Exon 21 of KDM6A(+)	Intron of KDM6A(+): 1Kb before exon 24	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.3175_c.3434-1006del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2253	NA	0	23	32	22
P-0003137-T01-IM5	SOMATIC	SMAD4	SMAD4	18	18	48581396	48616723	Intron of SMAD4(+): 33bp after exon 5	IGR: 5Kb after SMAD4(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	35327	NA	0	27	33	37
P-0011369-T01-IM5	SOMATIC	ASCC3	PRDM1	6	6	101334934	106536346	IGR: 6Kb after ASCC3(-)	Intron of PRDM1(+): 22bp after exon 2	GRCh37	INVERSION	PRDM1 (NM_001198) Rearrangement: chr6:g.101334934_c.291+22:PRDM1inv	PRECISE		MANUAL_OK	3to3	-	5201412	NA	0	27	47	27
P-0012505-T01-IM5	SOMATIC	SMAD4	UNC13C	18	15	48584727	54879988	Exon 7 of SMAD4(+)	Intron of UNC13C(+): 20Kb after exon 28	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) - UNC13C (NM_001080534) rearrangement: t(15;18)(q21.3;q21.2)(chr15:g.54879988::chr18:g.48584727)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SMAD4-UNC13C)	0	NA	0	58	34	57
P-0014332-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48593456	48597069	Exon 10 of SMAD4(+)	Intron of SMAD4(+): 4Kb after exon 10	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1207_c.1308+3512del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3613	NA	0	11	16	11
P-0007025-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40029375	42873714	5-UTR of ERG(-): 82Kb before coding start	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 2-11) : c.56-3598:TMPRSS2_c.-150+4207:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2844339	NA	0	49	45	46
P-0005824-T01-IM5	SOMATIC	SUPT4H1	RNF43	17	17	56427277	56434771	Intron of SUPT4H1(-): 1Kb after exon 2	Intron of RNF43(-): 58bp after exon 9	GRCh37	DUPLICATION	SUPT4H1 (NM_003168) - RNF43 (NM_017763) rearrangement event : :SUPT4H1_:RNF43dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (SUPT4H1-RNF43)	7494	NA	0	40	68	40
P-0002886-T01-IM3	SOMATIC	MTAP	CDKN2B	9	9	21860421	22008292	Intron of MTAP(+): 997bp after exon 7	Intron of CDKN2B(-): 505bp after exon 1	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (MTAP-CDKN2B)	147871	NA	0	16	32	16
P-0005211-T01-IM5	SOMATIC	MAPK4	SMAD4	18	18	48227925	48573464	Intron of MAPK4(+): 14Kb before exon 3	Exon 2 of SMAD4(+)	GRCh37	DELETION	MAPK4 (NM_002747) - SMAD4 (NM_005359) Rearrangement: c.547-13524:MAPK4_c.48:SMAD4del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MAPK4-SMAD4)	345539	NA	0	8	10	7
P-0013705-T01-IM5	SOMATIC	ASXL1	RALGAPB	20	20	31024182	37182615	Exon 12 of ASXL1(+)	Exon 22 of RALGAPB(+)	GRCh37	DELETION	ASXL1 (NM_015338) - RALGAPB (NM_020336) rearrangement:  c.3667:ASXL1_c.3268:RALGAPBdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (ASXL1-RALGAPB)	6158433	NA	0	37	39	37
P-0013861-T01-IM5	SOMATIC	KIF1B	MTOR	1	1	10376020	11301750	Intron of KIF1B(+): 4Kb before exon 21	Intron of MTOR(-): 12bp before exon 10	GRCh37	DUPLICATION	MTOR (NM_004958) Rearrangement : c.1413-12:MTOR_c.1978-4081:KIF1Bdup	PRECISE		MANUAL_OK	5to3	-	925730	NA	0	7	7	3
P-0011149-T01-IM5	SOMATIC	MGA	SPTBN5	15	15	42058819	42177366	Exon 23 of MGA(+)	Intron of SPTBN5(-): 567bp after exon 7	GRCh37	INVERSION	SPTBN5 (NM_016642) - MGA (NM_001164273) rearrangement : c.1520+567:SPTBN5_c.8539:MGAinv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (SPTBN5-MGA)	118547	NA	0	27	46	25
P-0011149-T01-IM5	SOMATIC	MET	MET	7	7	116397830	116403704	Intron of MET(+): 2bp after exon 8	Intron of MET(+): 382bp after exon 11	GRCh37	DELETION	MET (NM_000245) rearrangement : c.2102+2_2583+382del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	5874	NA	0	11	15	11
P-0011029-T02-IM5	SOMATIC	MRE11A	ST6GALNAC3	11	1	94192656	76791695	Exon 13 of MRE11A(-)	Intron of ST6GALNAC3(+): 12Kb after exon 2	GRCh37	TRANSLOCATION	ST6GALNAC3 (NM_152996) - MRE11A (NM_005591) rearrangement : t(1;11)(p31.1;q21)(chr1:g.76791695::chr11:g.94192656)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	30	39
P-0012307-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151874849	151960022	Exon 38 of MLL3(-)	Intron of MLL3(-): 79bp after exon 9	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement: c.1299+79_c.7689dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	85173	NA	0	26	25	26
P-0010464-T01-IM5	SOMATIC	IGF1R	PPP1R3A	15	7	99434762	113198852	Exon 3 of IGF1R(+)	IGR: 318Kb before PPP1R3A(-)	GRCh37	TRANSLOCATION	IGF1R (NM_000875) rearrangement: t(7;15)(q31.1;q25.3)(chr7:g.113198852::chr15:g.99434762)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	16	29
P-0002088-T01-IM3	SOMATIC	ERMP1	TGFBR1	9	9	5801401	101900043	Intron of ERMP1(-): 73bp before exon 11	Intron of TGFBR1(+): 98bp before exon 4	GRCh37	DELETION	TGFBR1 (NM_004612) Deletion : c.575-98_g.5801401del	PRECISE		MANUAL_OK	3to5	-	96098642	NA	0	16	30	18
P-0014235-T01-IM6	SOMATIC	LOC100128554	POLE	12	12	126611209	133244213	IGR: 316Kb before LOC100128554(+)	Exon 20 of POLE(-)	GRCh37	DUPLICATION	POLE (NM_006231) rearrangement: c.2195_chr12:g.126611209dup	PRECISE		MANUAL_OK	5to3	-	6633004	NA	0	20	23	20
P-0003408-T01-IM5	SOMATIC	EP300	PTPRN2	22	7	41558713	157390026	Intron of EP300(+): 14bp before exon 21	Intron of PTPRN2(-): 2Kb before exon 16	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (EP300-PTPRN2)	0	NA	0	13	29	13
P-0013774-T01-IM5	SOMATIC	MRPS22	MAP3K13	3	3	139046929	185146797	IGR: 16Kb before MRPS22(+)	Exon 2 of MAP3K13(+)	GRCh37	INVERSION	MAP3K13 (NM_004721) rearrangement: chr3:g.139046929_c.428:MAP3K13inv	PRECISE		MANUAL_OK	3to3	-	46099868	NA	0	11	16	11
P-0007971-T02-IM5	SOMATIC	FSCB	ARID5B	14	10	44208017	63851226	IGR: 765Kb before FSCB(-)	Exon 10 of ARID5B(+)	GRCh37	TRANSLOCATION	ARID5B (NM_032199) rearrangement : t(10;14)(q21.2;q21.2)(chr10:g.63851226::chr14:g.44208017)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	54	18	53
P-0013089-T01-IM5	SOMATIC	SETD2	FLJ39534	3	3	47164101	47250984	Exon 3 of SETD2(-)	5-UTR of FLJ39534(+): 35Kb before coding start	GRCh37	DELETION	SETD2 (NM_014159) Rearrangement : c.2025:SETD2_chr3:g.47250984del	PRECISE		MANUAL_OK	3to5	-	86883	NA	0	23	34	15
P-0003613-T01-IM5	SOMATIC	FGFR2	TACC2	10	10	123243063	123741897	Intron of FGFR2(-): 149bp after exon 16	IGR: 7Kb before TACC2(+)	GRCh37	INVERSION	FGFR2 (NM_000141)  Rearrangement:  c.2301+149_g.123741897inv	PRECISE		MANUAL_OK	5to5	-	498834	NA	0	4	5	4
P-0001278-T01-IM3	SOMATIC	NOTCH3	EPHX3	19	19	15296415	15340016	Exon 13 of NOTCH3(-)	Intron of EPHX3(-): 1Kb before exon 6	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (EPHX3-NOTCH3)	43601	NA	0	16	39	16
P-0007995-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41245580	41266487	5-UTR of CTNNB1(+): 20Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-49+4419_c.284del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	20907	NA	0	44	50	43
P-0005190-T01-IM5	SOMATIC	EMID1	EWSR1	22	22	29602939	29687753	Intron of EMID1(+): 811bp after exon 1	Intron of EWSR1(+): 165bp after exon 8	GRCh37	DELETION	EMID1 (NM_133455) - EWSR1 (NM_013986) Rearrangement :  c.101+811:EMID1_c.794-373:EWSR1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EMID1-EWSR1)	84814	NA	0	13	32	13
P-0010588-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72831823	73065678	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-): 72Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.-50+15973_c.4758del.	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	233855	NA	0	34	51	34
P-0009356-T01-IM5	SOMATIC	STAT5A	CA10	17	17	40453449	49913044	Exon 10 of STAT5A(+)	Intron of CA10(-): 88Kb before exon 4	GRCh37	INVERSION	CA10 (NM_001082533) - STAT5A (NM_003152) rearrangement: c.280-87866:CA10_c.1146:STAT5Ainv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CA10-STAT5A)	9459595	NA	0	40	92	40
P-0012821-T01-IM5	SOMATIC	VEGFA	VEGFA	6	6	43746536	43797417	Intron of VEGFA(+): 90bp before exon 5	IGR: 59Kb before VEGFA(+)	GRCh37	DUPLICATION	VEGFA (NM_001171623) rearrangement : g.43797417_c.393-90:VEGFAdup	PRECISE		MANUAL_OK	5to3	-	50881	NA	0	26	21	26
P-0004597-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67591159	67613108	Intron of PIK3R1(+): 7bp after exon 7	IGR: 27Kb before PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement : c.1745+7:PIK3R1_chr5:g.67613108del	PRECISE		MANUAL_OK	3to5	-	21949	NA	0	16	16	15
P-0007143-T02-IM5	SOMATIC	TMPRSS2	PCDH7	21	4	42875074	29662732	Intron of TMPRSS2(-): 5Kb after exon 1	IGR: 1Mb before PCDH7(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(4;21)(p15.1;q22.3)(chr4:g.29662732::chr21:g.42875074)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	55	0	50
P-0007852-T01-IM5	SOMATIC	TERT	SUB1	5	5	1260584	32544184	Intron of TERT(-): 5bp after exon 12	IGR: 41Kb before SUB1(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement : c.2970+5:TERT_chr5:g.32544184del	PRECISE		MANUAL_OK	3to5	-	31283600	NA	0	15	31	15
P-0007852-T01-IM5	SOMATIC	CDH12	RAI14	5	5	21824669	34625690	Intron of CDH12(-): 7Kb before exon 9	IGR: 31Kb before RAI14(+)	GRCh37	INVERSION	CDH12 (NM_004061) rearrangement : c.815-7428:CDH1_chr5:g.34625690inv	PRECISE		MANUAL_OK	5to5	-	12801021	NA	0	19	31	20
P-0014680-T01-IM6	SOMATIC	CCND1	PGR	11	11	69454703	100962424	Promoter of CCND1(+): 1Kb from tx start	Intron of PGR(-): 67bp after exon 3	GRCh37	INVERSION	PGR (NM_000926) - CCND1 (NM_053056) rearrangement: c.1906+67:PGR_c.-1379:CCND1inv	PRECISE		MANUAL_OK	5to5	Transcript fusion (PGR-CCND1)	31507721	NA	0	11	12	11
P-0012317-T01-IM5	SOMATIC	RICTOR	BSN	5	3	38991280	49594666	Intron of RICTOR(-): 103bp before exon 7	Intron of BSN(+): 2Kb after exon 1	GRCh37	TRANSLOCATION	BSN (NM_003458) - RICTOR (NM_152756) Rearrangement : t(3;5)(p21.312;p13.1)(chr3:g49594666::chr5:g.38991280)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (BSN-RICTOR)	0	NA	0	8	2	8
P-0000377-T04-IM5	SOMATIC	MIPOL1	FOXA1	14	14	37858501	38061625	Intron of MIPOL1(+): 20Kb after exon 11	Exon 2 of FOXA1(-)	GRCh37	INVERSION	MIPOL1(NM_138731) - FOXA1(NM_004496): Rearrangement : c.936+19672:MIPOL1_c.364:FOXA1inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MIPOL1-FOXA1)	203124	NA	0	15	22	15
P-0000377-T04-IM5	SOMATIC	KDM5D	KDM5D	Y	Y	21877659	21879555	Intron of KDM5D(-): 34bp before exon 16	Intron of KDM5D(-): 954bp before exon 13	GRCh37	INVERSION	KDM5D(NM_001146705) Rearrangement : c.2307-34_1810-954inv	PRECISE		MANUAL_OK	3to3	-	1896	NA	0	15	13	15
P-0013969-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5029150	5126427	Intron of JAK2(+): 633bp before exon 4	Exon 24 of JAK2(+)	GRCh37	DUPLICATION	JAK2 (NM_004972) Rearrangement : c.227-633_c.3272dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	97277	NA	0	32	51	31
P-0001430-T01-IM3	SOMATIC	CBL	CBL	11	11	119149058	119150263	Intron of CBL(+): 51bp after exon 8	Intron of CBL(+): 840bp after exon 9	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion of 1 exon: in frame	1205	NA	0	10	20	13
P-0006840-T01-IM5	SOMATIC	DOCK7	JAK1	1	1	62930879	65339036	Intron of DOCK7(-): 8Kb before exon 48	Intron of JAK1(-): 17bp after exon 5	GRCh37	DELETION	DOCK7 (NM_033407) - JAK1 (NM_002227) rearrangement : c.6120-7503:DOCK7_c.483+17:JAK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (JAK1-DOCK7)	2408157	NA	0	102	79	109
P-0006840-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39885797	42872258	Intron of ERG(-): 62Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4 to 10) : c.55+3696:TMPRSS2:c.39+61789:ERG_del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2986461	NA	0	102	92	143
P-0008752-T01-IM5	SOMATIC	OR3A2	RB1	17	13	3170417	48916707	IGR: 11Kb before OR3A2(-)	Intron of RB1(+): 28bp before exon 3	GRCh37	TRANSLOCATION	RB1 (NM_000321) Rearrangement :  t(13;17)(13q14.2;17p13.3)(chr13:g.48916707::chr17:g.3170417)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	19	33
P-0009325-T02-IM5	SOMATIC	RAD51C	DHX40	17	17	56809882	57680376	Exon 8 of RAD51C(+)	Intron of DHX40(+): 399bp after exon 15	GRCh37	DELETION	RAD51C (NM_058216) - DHX40 (NM_024612) rearrangement: c.1003:RAD51C_c.1901+399:DHX40del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RAD51C-DHX40)	870494	NA	0	35	47	33
P-0001903-T01-IM3	SOMATIC	SYK	SYK	9	9	93591197	93606313	5-UTR of SYK(+): 15Kb before coding start	Exon 2 of SYK(+)	GRCh37	INVERSION		PRECISE		AUTO_OK	5to5	-	15116	NA	0	6	36	7
P-0001687-T01-IM3	SOMATIC	SND1	BRAF	7	7	127389835	140490224	Intron of SND1(+): 28Kb after exon 10	Intron of BRAF(-): 3Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) inversion:  c.1152+28381_c.1141-2840inv	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13100389	NA	0	87	71	85
P-0003023-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39859274	42874410	Intron of ERG(-): 11Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015136	NA	0	6	10	7
P-0004937-T01-IM5	SOMATIC	ATM	C11orf65	11	11	108235970	108252190	Intron of ATM(+): 25bp after exon 62	IGR: 2Kb before C11orf65(-)	GRCh37	DELETION	ATM (NM_000051) - C11orf65 (NM_152587) rearrangement : c.8987+25:ATM_c.*1558:C11orf65del	PRECISE		MANUAL_OK	3to5	-	16220	NA	0	15	29	15
P-0006090-T01-IM5	SOMATIC	FLT1	FLT1	13	13	28876853	28885792	3-UTR of FLT1(-): 451bp after coding stop	Exon 27 of FLT1(-)	GRCh37	DELETION	FLT1 (NM_002019)  Rearrangement :  c.3570_*451del	PRECISE		MANUAL_OK	3to5	-	8939	NA	0	52	71	49
P-0010382-T01-IM5	SOMATIC	TOP1	TOP1	20	20	39728901	39730699	Intron of TOP1(+): 18bp after exon 12	Intron of TOP1(+): 706bp after exon 13	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.1163+18_c.1308+706del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	1798	NA	0	22	32	21
P-0005567-T01-IM5	SOMATIC	SLC16A7	POLE	12	12	61019594	133201301	IGR: 936Kb before SLC16A7(+)	Exon 49 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) Rearrangement :  c.6843:POLE_chr12:g.61019594inv	PRECISE		MANUAL_OK	5to5	-	72181707	NA	0	32	62	32
P-0003130-T01-IM5	SOMATIC	GLI1	TSPAN8	12	12	57864464	71414253	Exon 11 of GLI1(+)	IGR: 105Kb before TSPAN8(-)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	-	13549789	NA	1	17	29	19
P-0011558-T01-IM5	SOMATIC	VGLL3	EPHA3	3	3	86628511	89498495	IGR: 359Kb before VGLL3(-)	Exon 14 of EPHA3(+)	GRCh37	INVERSION	EPHA3 (NM_005233) rearrangement: chr3:g.86628511_c.2467inv	PRECISE		MANUAL_OK	5to5	-	2869984	NA	0	5	8	5
P-0002321-T01-IM3	SOMATIC	CUL1	EZH2	7	7	148488263	148511881	Intron of CUL1(+): 730bp after exon 16	Intron of EZH2(-): 125bp after exon 14	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Antisense fusion	23618	NA	0	10	29	14
P-0005353-T01-IM5	SOMATIC	NF1	NF1	17	17	29665263	29683572	Intron of NF1(+): 106bp after exon 44	Exon 51 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.6819+106_c.7710del	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	18309	NA	0	15	34	15
P-0005353-T01-IM5	SOMATIC	SOX2	SOX2OT	3	3	181430417	181432493	Exon 1 of SOX2(+)	5-UTR of SOX2OT(+): 27Kb before coding start	GRCh37	DELETION	SOX2 (NM_003106) rearrangement: c.269_chr3:g.181432493del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SOX2-SOX2OT)	2076	NA	0	31	72	27
P-0001449-T01-IM3	SOMATIC	TMPRSS2	ETV1	21	7	42871486	14003133	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of ETV1(-): 14Kb after exon 6	GRCh37	TRANSLOCATION	None	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (TMPRSS2-ETV1)	0	NA	0	14	22	0
P-0005264-T01-IM5	SOMATIC	EIF4A2	RFC4	3	3	186503740	186523623	Exon 5 of EIF4A2(+)	5-UTR of RFC4(-): 1Kb before coding start	GRCh37	INVERSION	EIF4A2 (NM_001967) - RFC4 (NM_002916) Rearrangement: c.417:EIF4A2_c.-12+456:RFC4inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EIF4A2-RFC4)	19883	NA	0	26	31	17
P-0010812-T01-IM5	SOMATIC	TSC2	PKD1	16	16	2135324	2162611	Intron of TSC2(+): 1bp after exon 35	Intron of PKD1(-): 137bp before exon 14	GRCh37	DELETION	TSC2 (NM_000548) - PKD1 (NM_001009944) rearrangement : c.4662+1:TSC2_c.3162-137:PKD1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	27287	NA	0	6	6	3
P-0013772-T01-IM5	SOMATIC	ANXA10	FAT1	4	4	169043150	187542027	Intron of ANXA10(+): 6Kb before exon 2	Exon 10 of FAT1(-)	GRCh37	INVERSION	ANXA10 (NM_007193) - FAT1 (NM_005245) rearrangement: c.19-6085:ANXA10_c.5713:FAT1inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ANXA10-FAT1)	18498877	NA	0	21	32	15
P-0005984-T01-IM5	SOMATIC	PROCA1	BRCA1	17	17	27032930	41245974	Intron of PROCA1(-): 1Kb before exon 2	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) -  PROCA1 (NM_152465) rearrangement: c.1574:BRCA1_c.92-1069:PROCA1inv.	PRECISE		MANUAL_OK	5to5	Antisense fusion	14213044	NA	0	31	79	31
P-0008516-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44918515	44922919	Exon 12 of KDM6A(+)	Exon 16 of KDM6A(+)	GRCh37	DUPLICATION	KDM6A (NM_021140) Rearrangement :  c.998_1780dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	4404	NA	0	11	31	11
P-0011303-T01-IM5	SOMATIC	STK11	STK11	19	19	1218939	1221207	Intron of STK11(+): 384bp before exon 3	Intron of STK11(+): 5bp before exon 6	GRCh37	DUPLICATION	STK11 (NM_000455) rearrangement: c.375-384_c.735-5dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: in frame	2268	NA	0	65	75	59
P-0012790-T02-IM5	SOMATIC	ARID2	SFRS2IP	12	12	46244349	46326920	Exon 15 of ARID2(+)	Exon 9 of SFRS2IP(-)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.2443:ARID2_chr12:g.46326920del	PRECISE		MANUAL_OK	3to5	Antisense fusion	82571	NA	0	8	6	8
P-0002609-T01-IM3	SOMATIC	ELAC2	BRCA1	17	17	12950162	41246530	IGR: 55Kb before ELAC2(-)	Exon 10 of BRCA1(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	28296368	NA	0	15	27	18
P-0006402-T01-IM5	SOMATIC	KDR	KDR	4	4	55940149	55976521	IGR: 4Kb before KDR(-)	Intron of KDR(-): 49bp after exon 9	GRCh37	INVERSION	KDR (NM_002253) rearrangement : c.1255+49_*5959inv	PRECISE		MANUAL_OK	5to5	-	36372	NA	0	33	46	32
P-0001286-T01-IM3	SOMATIC	EP300	EP300	22	22	41520433	41542586	Intron of EP300(+): 1Kb before exon 3	Intron of EP300(+): 157bp before exon 11	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion of 8 exons: out of frame	22153	NA	0	5	8	6
P-0003052-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875748	42872061	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2996313	NA	0	11	29	12
P-0011331-T01-IM5	SOMATIC	BRIP1	BRIP1	17	17	59760837	59768085	Exon 20 of BRIP1(-)	Intron of BRIP1(-): 3Kb after exon 18	GRCh37	DELETION	BRIP1 (NM_032043) Rearrangement :  c.2575+2706_c.3570del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7248	NA	0	6	3	6
P-0011331-T01-IM5	SOMATIC	PLEKHG4B	TERT	5	5	23741	1272471	IGR: 117Kb before PLEKHG4B(+)	Intron of TERT(-): 76bp before exon 7	GRCh37	INVERSION	TERT (NM_198253) Rearrangement :  chr5:g.23741_c.2287-76:TERTinv	PRECISE		MANUAL_OK	3to3	-	1248730	NA	0	12	29	5
P-0004892-T01-IM5	SOMATIC	ATAD1	PTEN	10	10	89542369	89720809	Intron of ATAD1(-): 2Kb after exon 5	Exon 8 of PTEN(+)	GRCh37	DELETION	ATAD1 (NM_032810) - PTEN (NM_000314) rearrangement: c.583+1858:ATAD1_NM_000314.4:c.960:PTENdel	PRECISE		MANUAL_OK	3to5	-	178440	NA	0	29	32	15
P-0004892-T01-IM5	SOMATIC	BRCA2	INSC	13	11	32893422	15549664	Exon 3 of BRCA2(+)	IGR: 413Kb before INSC(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(13;11)(q13;p15.2)(chr13:g.32893422::chr11:g.11:15549664)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	26	16
P-0007700-T01-IM5	SOMATIC	AXL	ZNF525	19	19	41726711	53878345	Exon 2 of AXL(+)	5-UTR of ZNF525(+): 11Kb before coding start	GRCh37	INVERSION	AXL (NM_021913) rearrangement: c.256:AXL_chr19:g.53878345inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	12151634	NA	0	31	38	29
P-0000632-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646313	149783283	Intron of ROS1(-): 735bp before exon 34	Intron of CD74(-): 408bp before exon 7	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	20	32	0
P-0012122-T01-IM5	SOMATIC	RAD51C	BCAS3	17	17	56809953	58779931	Intron of RAD51C(+): 48bp after exon 8	Intron of BCAS3(+): 7Kb before exon 5	GRCh37	INVERSION	RAD51C (NM_058216) - BCAS3 (NM_001099432) Rearrangement : c.1026+48:RAD51C_c.215-6649:BCAS3inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	1969978	NA	0	23	31	23
P-0004440-T01-IM5	SOMATIC	SLC38A3	PBRM1	3	3	50262086	52643390	IGR: 4Kb after SLC38A3(+)	Exon 17 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) Rearrangement :  c.2506:PBRM1_chr3.g.50262086del	PRECISE		MANUAL_OK	3to5	-	2381304	NA	0	14	6	8
P-0004708-T01-IM5	SOMATIC	LATS2	LATS2	13	13	21562916	21573184	Exon 4 of LATS2(-)	Intron of LATS2(-): 8Kb before exon 3	GRCh37	DELETION	LATS2 (NM_014572) rearrangement : c.343-7641_1003del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	10268	NA	0	14	24	14
P-0008663-T01-IM5	SOMATIC	DIS3	FAM155A	13	13	73352470	107986256	Exon 3 of DIS3(-)	Intron of FAM155A(-): 123Kb before exon 2	GRCh37	DUPLICATION	DIS3 (NM_014953) - FAM155A (NM_001080396) rearrangement: c.435:DIS3_c.916-123153:FAM155Adup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DIS3-FAM155A)	34633786	NA	0	48	53	48
P-0008663-T01-IM5	SOMATIC	PTCH1	GULP1	9	2	98215982	189388232	Intron of PTCH1(-): 80bp before exon 20	Intron of GULP1(+): 678bp after exon 5	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) - GULP1 (NM_016315) rearrangement: t(2;9)(q32.1;q22.32)(chr2:g.189388232::chr9:g.98215982)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	21	20
P-0004113-T01-IM5	SOMATIC	TP53	TP53	17	17	7573088	7574530	Intron of TP53(-): 80bp before exon 11	Intron of TP53(-): 497bp before exon 10	GRCh37	INVERSION	TP53 (NM_000546) rearrangement event: c.994-497_1101-80inv	PRECISE		MANUAL_OK	3to3	-	1442	NA	0	7	8	6
P-0012683-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41263595	41267019	5-UTR of CTNNB1(+): 2Kb before coding start	Exon 5 of CTNNB1(+)	GRCh37	INVERSION	CTNNB1 (NM_001904) rearrangement: c.-48-1917_c.690inv	PRECISE		MANUAL_OK	5to5	-	3424	NA	0	15	19	13
P-0004600-T02-IM5	SOMATIC	FGFR1	ACPP	8	3	38286054	132081259	Intron of FGFR1(-): 101bp before exon 3	Intron of ACPP(+): 5Kb before exon 11	GRCh37	TRANSLOCATION	ACPP (NM_001134194) - FGFR1 (NM_001174067)  t(3;8)(q22.1;p11.22)(chr3:g.132081259::chr18:g.38286054)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ACPP-FGFR1)	0	NA	0	8	10	8
P-0004835-T01-IM5	SOMATIC	PLEKHO2	MAP2K1	15	15	65136002	66782890	Intron of PLEKHO2(+): 2Kb after exon 1	Exon 11 of MAP2K1(+)	GRCh37	DUPLICATION	MAP2K1 (NM_002755) - PLEKHO2 (NM_025201) rearrangement : c.1119:MAP2K1_c.12+1775:PLEKHO2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MAP2K1-PLEKHO2)	1646888	NA	0	18	25	17
P-0004835-T01-IM5	SOMATIC	PTRH2	BRIP1	17	17	57784489	59770771	5-UTR of PTRH2(-): 9Kb before coding start	Intron of BRIP1(-): 20bp after exon 18	GRCh37	DELETION	BRIP1 (NM_032043) - PTRH2 (NM_016077) rearrangement :  c.2575+20:BRIP1_c.-1+243:PTRH2del	PRECISE		MANUAL_OK	3to5	Transcript fusion (BRIP1-PTRH2)	1986282	NA	0	102	92	167
P-0005879-T01-IM5	SOMATIC	STAT3	RGS9	17	17	40476809	63200520	Exon 17 of STAT3(-)	Intron of RGS9(+): 101bp after exon 15	GRCh37	INVERSION	RGS9  (NM_003835) - STAT3 (NM_139276) Rearrangement :  c.1203+101:RGS9_c.1520:STAT3inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (RGS9-STAT3)	22723711	NA	0	90	70	86
P-0007971-T01-IM5	SOMATIC	FSCB	ARID5B	14	10	44208017	63851226	IGR: 765Kb before FSCB(-)	Exon 10 of ARID5B(+)	GRCh37	TRANSLOCATION	ARID5B (NM_032199) rearrangement : t(10;14)(q21.2;q21.2)(chr10:.g.63851226::chr14:g.44208017 )	PRECISE		MANUAL_OK	3to5	-	0	NA	0	86	24	84
P-0007971-T01-IM5	SOMATIC	FANCC	FANCC	9	9	97897618	97909047	Intron of FANCC(-): 10bp after exon 8	Intron of FANCC(-): 3Kb after exon 7	GRCh37	DELETION	FANCC (NM_000136) rearrangement: c.686+3158_843+10del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	11429	NA	0	6	9	6
P-0013032-T01-IM5	SOMATIC	IFNG	SETD2	12	3	68312811	47084233	IGR: 236Kb before IFNG(-)	Intron of SETD2(-): 43bp before exon 17	GRCh37	TRANSLOCATION	SETD2 (NM_014159) rearrangement: t(3;12)(p21.31;q15)(chr3:g.47084233::chr12:g.68312811)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	3	9
P-0009469-T01-IM5	SOMATIC	CDH1	CDH1	16	16	68835712	68837807	Exon 3 of CDH1(+)	Intron of CDH1(+): 2Kb after exon 3	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement : c.303_387+2011del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2095	NA	0	7	26	7
P-0007037-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52703304	52712581	Intron of PBRM1(-): 643bp before exon 4	Exon 3 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement :  c.171_237-643dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	9277	NA	0	15	35	15
P-0005176-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89687559	89720702	Intron of PTEN(+): 2Kb after exon 3	Exon 8 of PTEN(+)	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.209+2245_c.853dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	33143	NA	0	14	13	12
P-0005176-T01-IM5	SOMATIC	RB1	RB1	13	13	48941622	48963511	Intron of RB1(+): 8bp before exon 10	Intron of RB1(+): 8Kb after exon 17	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.940-8_c.1695+7932dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	21889	NA	0	60	44	56
P-0005176-T01-IM5	SOMATIC	EP300	EP300	22	22	41554465	41557993	Exon 19 of EP300(+)	Intron of EP300(+): 734bp before exon 21	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.3551_c.3672-734dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3528	NA	0	31	31	31
P-0011029-T01-IM5	SOMATIC	MRE11A	ST6GALNAC3	11	1	94192656	76791695	Exon 13 of MRE11A(-)	Intron of ST6GALNAC3(+): 12Kb after exon 2	GRCh37	TRANSLOCATION	ST6GALNAC3 (NM_152996) - MRE11A (NM_005591) rearrangement : t(1;11)(p31.1;q21)(chr1:g.76791695::chr11:g.94192656)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	31	28
P-0013345-T01-IM5	SOMATIC	IRS2	OXR1	13	8	110437592	107336496	Exon 1 of IRS2(-)	5-UTR of OXR1(+): 35Kb before coding start	GRCh37	TRANSLOCATION	IRS2 (NM_003749) - OXR1 (NM_001198532) Rearrangement : t(8,13)(8q23.1,13q34)(chr8:g.107336496::chr13:g.110437592)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (IRS2-OXR1)	0	NA	0	10	19	8
P-0005428-T01-IM5	SOMATIC	TMPRSS2	EIF4A2	21	3	42874720	186488282	Intron of TMPRSS2(-): 5Kb before exon 2	IGR: 13Kb before EIF4A2(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement : t(21;3)(q22.3;q27.3)(chr21:g.42874720::chr3:g.186488282)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	24	29
P-0011284-T01-IM5	SOMATIC	NF1	NF1	17	17	29420509	29422244	Promoter of NF1(+): 1Kb from tx start	5-UTR of NF1(+): 84bp before coding start	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.-1819_c.-84del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1735	NA	0	5	6	5
P-0006174-T01-IM5	SOMATIC	RICTOR	RICTOR	5	5	38979169	38981975	Intron of RICTOR(-): 417bp before exon 9	Exon 8 of RICTOR(-)	GRCh37	DELETION	RICTOR(NM_152756) rearrangement: c.754-417:RICTOR_c.584+163:del.	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2806	NA	0	102	80	165
P-0008682-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89711725	89720727	Intron of PTEN(+): 150bp before exon 6	Exon 8 of PTEN(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement :  c.493-150_ 878inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	9002	NA	0	13	25	10
P-0006905-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39880373	42871259	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) reciprocal fusion (TMPRSS exon1 fused with ERG exons 4-11) : c.56-1143:TMPRSS2_c.40-62829:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2990886	NA	0	102	79	96
P-0006905-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864886	42871214	Intron of TMPRSS2(-): 1Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement : c.56-1098_349+1397inv	PRECISE		MANUAL_OK	3to3	-	6328	NA	0	102	87	133
P-0004981-T01-IM5	SOMATIC	ERG	FZD10	21	12	39755710	130616610	Exon 11 of ERG(-)	IGR: 30Kb before FZD10(+)	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(12;21)(q24.33;q13.1)(chr12:g.130616610::chr21:g.39755710)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	66	37	65
P-0006611-T01-IM5	SOMATIC	STAG2	KCNJ15	X	21	123164894	39629841	Exon 4 of STAG2(+)	5-UTR of KCNJ15(+): 41Kb before coding start	GRCh37	TRANSLOCATION	STAG2 (NM_001042749) - KCNJ15 (NM_170737) rearrangement : t(X;21)(q25;q22.13)(chrX:g.123164894::chr21:g.39629841)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	42	23	41
P-0003536-T02-IM5	SOMATIC	TSHZ3	AKT2	19	19	31771477	40746032	Intron of TSHZ3(-): 819bp before exon 2	Intron of AKT2(-): 15bp before exon 7	GRCh37	DUPLICATION	TSHZ3 (NM_020856) - AKT2 (NM_001626) rearrangement: c.41-819:TSHZ3_c.574-15:AKT2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TSHZ3-AKT2)	8974555	NA	0	8	10	8
P-0010465-T01-IM5	SOMATIC	FGFR3	WHSC1	4	4	1807917	1889613	Intron of FGFR3(+): 17bp after exon 14	5-UTR of WHSC1(+): 13Kb before coding start	GRCh37	DELETION	FGFR3 (NM_000142) - WHSC1 (NM_001042424) rearrangement:c.1959+17:FGFR3_c.-29-12740:WHSC1del	PRECISE		MANUAL_OK	3to5	Transcript fusion (FGFR3-WHSC1)	81696	NA	0	22	36	22
P-0010465-T01-IM5	SOMATIC	E2F3	E2F3	6	6	20402550	20428248	Exon 1 of E2F3(+)	Intron of E2F3(+): 25Kb after exon 1	GRCh37	DELETION	E2F3 (NM_001949) rearrangement: c.87_c.393+25392del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	25698	NA	0	12	13	11
P-0004346-T01-IM5	SOMATIC	NOTCH4	C6orf10	6	6	32166486	32262478	Exon 25 of NOTCH4(-)	Intron of C6orf10(-): 665bp before exon 11	GRCh37	DUPLICATION	NOTCH4 (NM_004557) - C6orf10 (NM_006781) rearrangement: c.4557:NOTCH4_c.638-666:C6orf10dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NOTCH4-C6orf10)	95992	NA	0	7	13	6
P-0002630-T01-IM3	SOMATIC	RUNX1	RUNX1	21	21	36206692	36242387	Intron of RUNX1(-): 15bp after exon 4	Intron of RUNX1(-): 10Kb after exon 2	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	35695	NA	0	29	51	35
P-0012109-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874244	42875429	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion  (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+4448:TMPRSS2_c.40-56700:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001185	NA	0	102	145	197
P-0013498-T01-IM5	SOMATIC	PAK1	PAK1	11	11	77034308	77035479	3-UTR of PAK1(-): 11bp after coding stop	Intron of PAK1(-): 894bp after exon 15	GRCh37	INVERSION	PAK1 (NM_002576) rearrangement: c.1552-1074_c.*11inv	IMPRECISE		MANUAL_OK	3to3	-	1171	NA	0	59	0	49
P-0013498-T01-IM5	SOMATIC	B2M	B2M	15	15	45007899	45009802	Exon 2 of B2M(+)	3-UTR of B2M(+): 1Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346_c.*15-3del	PRECISE		MANUAL_OK	3to5	-	1903	NA	0	30	22	29
P-0002792-T01-IM3	SOMATIC	BRCA1	SMAD3	17	15	41197391	67477119	3-UTR of BRCA1(-): 304bp after coding stop	Exon 7 of SMAD3(+)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	72	33
P-0013050-T01-IM5	SOMATIC	CHEK2	WDFY4	22	10	29093021	49868405	Intron of CHEK2(-): 46bp before exon 10	IGR: 25Kb before WDFY4(+)	GRCh37	TRANSLOCATION	CHEK2 (NM_007194) rearrangement: t(10;22)(q11.22;q12.1)(chr10:g.49868405::chr22:g.29093021)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	24	11	23
P-0005070-T01-IM5	SOMATIC	POLE	POLE	12	12	133201823	133219398	Intron of POLE(-): 243bp before exon 48	Intron of POLE(-): 8bp after exon 36	GRCh37	INVERSION	POLE (NM_006231)  Rearrangement:  c.6658-243_4728+8inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	17575	NA	0	25	56	26
P-0014310-T01-IM6	SOMATIC	ALK	EML4	2	2	29447544	42497999	Intron of ALK(-): 783bp after exon 19	Intron of EML4(+): 6Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused to ALK exons 20- 29): c.667+6128:EML4_c.3172+783:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13050455	NA	0	25	43	24
P-0008852-T01-IM5	SOMATIC	BMPR1A	BMPR1A	10	10	88564454	88649842	5-UTR of BMPR1A(+): 71Kb before coding start	Exon 4 of BMPR1A(+)	GRCh37	INVERSION	BMPR1A (NM_004329) rearrangement: c.-267-34168_c.91inv	PRECISE		MANUAL_OK	5to5	-	85388	NA	0	17	61	9
P-0005862-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1743609	1808707	Intron of TACC3(+): 896bp after exon 13	Intron of FGFR3(+): 46bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (exons 1-17 of FGFR3 fused to exons 14-16 of TACC3): c.2274+46:FGFR3_c.2223+896:TACC3dup.	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	65098	NA	0	27	38	27
P-0008929-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265669	41266353	Intron of CTNNB1(+): 97bp after exon 2	Intron of CTNNB1(+): 92bp before exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.13+97_242-92del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	684	NA	0	22	25	20
P-0007131-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739228	1808764	Intron of TACC3(+): 97bp before exon 10	Intron of FGFR3(+): 79bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 with TACC3 exons 10-16) : c.2275-79:FGFR3_c.1837-97:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	69536	NA	0	18	22	17
P-0009346-T01-IM5	SOMATIC	MAFB	ARID2	20	12	38766766	46230848	IGR: 548Kb before MAFB(-)	Intron of ARID2(+): 74bp after exon 8	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement : t(12;20)(q12;q12)(chr12:g.46230848::chr20:g.38766766)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	13	0	13
P-0009393-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3900935	3916357	Exon 2 of CREBBP(-)	Intron of CREBBP(-): 13Kb after exon 1	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.85+13476_c.161del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	15422	NA	0	18	44	18
P-0003665-T01-IM5	SOMATIC	ETV6	BCL2L14	12	12	12014898	12175381	Intron of ETV6(+): 7Kb before exon 5	IGR: 48Kb before BCL2L14(+)	GRCh37	INVERSION	c.464-7460:ETV6_chr12:g.12175381inv	PRECISE		MANUAL_OK	5to5	-	160483	NA	0	47	56	47
P-0009985-T01-IM5	SOMATIC	LOC100134259	MSH6	2	2	47072226	48027637	5-UTR of LOC100134259(+): 14Kb before coding start	Exon 4 of MSH6(+)	GRCh37	INVERSION	MSH6 (NM_000179) Rearrangement :  chr2:g.47072226_ c.2515:MSH6inv	PRECISE		MANUAL_OK	5to5	-	955411	NA	0	14	18	14
P-0005109-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140491259	140527642	Intron of BRAF(-): 3Kb after exon 8	Intron of BRAF(-): 7Kb after exon 3	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.504+6767_c.1140+2849del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons: in frame	36383	NA	0	45	47	42
P-0003541-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39862198	42867573	Intron of ERG(-): 8Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_001136154) fusion : c.127-1068:TMPRSS2_c.40-44654:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3005375	NA	0	63	83	68
P-0011440-T01-IM5	SOMATIC	EPHA4	IRS1	2	2	221522284	227661711	IGR: 760Kb before EPHA4(-)	Exon 1 of IRS1(-)	GRCh37	DELETION	IRS1 (NM_005544) rearrangement : chr2:g.221522284_c.1744:IRS1del	PRECISE		MANUAL_OK	3to5	-	6139427	NA	0	30	45	30
P-0004999-T01-IM5	SOMATIC	STAG2	OR13H1	X	X	123199716	130653015	Intron of STAG2(+): 10bp before exon 20	IGR: 25Kb before OR13H1(+)	GRCh37	INVERSION	STAG2(NM_001042749)  Rearrangement : c.2026-10:STAG2_chrX:g.130653015	PRECISE		MANUAL_OK	5to5	-	7453299	NA	0	17	12	17
P-0004999-T01-IM5	SOMATIC	STAT3	ALOX5AP	17	13	40490706	31343786	Intron of STAT3(-): 43bp after exon 6	IGR: 5Kb after ALOX5AP(+)	GRCh37	TRANSLOCATION	STAT3(NM_139276) Rearrangement  : t(17;13)(17q21.2;13p12.3)(chr17:g.40490706::chr13:g.31343786)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	8	12
P-0003097-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1732854	1808841	Intron of TACC3(+): 45bp before exon 6	Intron of FGFR3(+): 2bp before exon 18	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	75987	NA	0	73	94	78
P-0010809-T01-IM5	SOMATIC	NCOA3	NCOA3	20	20	46266983	46268559	Intron of NCOA3(+): 456bp after exon 13	Exon 15 of NCOA3(+)	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.2512+456_ 2946del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1576	NA	0	32	40	32
P-0010075-T01-IM5	SOMATIC	TNFRSF19	RB1	13	13	24150799	48916680	5-UTR of TNFRSF19(+): 14Kb before coding start	Intron of RB1(+): 55bp before exon 3	GRCh37	DELETION	RB1 (NM_000321) Rearrangement : chr13:g.24150799_c.265-55:RB1del	PRECISE		MANUAL_OK	3to5	Transcript fusion (TNFRSF19-RB1)	24765881	NA	0	8	10	8
P-0009819-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39869920	42867985	Intron of ERG(-): 367bp after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1480:TMPRSS2_c.40-52376:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2998065	NA	0	3	15	3
P-0011429-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860560	42876141	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+3736:TMRPSS2_c.40-43016:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015581	NA	0	15	49	15
P-0007842-T01-IM5	SOMATIC	FAR2	KDR	12	4	29059026	55970822	IGR: 318Kb before FAR2(+)	Exon 13 of KDR(-)	GRCh37	TRANSLOCATION	FAR2 (NM_018099) - KDR (NM_002253.2) translocation : t(12,4)(p11.22; q12)(chr12:g.29059026::chr4:g.55970822)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	13
P-0007014-T01-IM5	SOMATIC	ZFP64	RAD51C	20	17	50920486	56809889	IGR: 153Kb before ZFP64(-)	Exon 8 of RAD51C(+)	GRCh37	TRANSLOCATION	RAD51C (NM_058216) rearrangement: t(17;20)(q22;q13.2)(chr17:g.56809889::chr20:g.50920486)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	102	29	102
P-0012986-T01-IM5	SOMATIC	RB1	RCBTB2	13	13	49039350	49107711	Exon 23 of RB1(+)	Promoter of RCBTB2(-): 395bp from tx start	GRCh37	DUPLICATION	RB1 (NM_00032) rearrangement: c.2335_ chr13:g.49107711dup	PRECISE		MANUAL_OK	5to3	-	68361	NA	0	54	80	54
P-0000386-T02-IM5	SOMATIC	MARVELD3	FGFR2	16	10	71660650	123243101	Intron of MARVELD3(+): 51bp after exon 1	Intron of FGFR2(-): 111bp after exon 16	GRCh37	TRANSLOCATION	MARVELD3 (NM_001017967) - FGFR2 (NM_000141) rearrangement: t(16;10)(16q22.2;10q26.13) (chr16:g.71660650::chr10:123243101)	PRECISE		MANUAL_OK	3to5	Antisense fusion	0	NA	0	23	25	0
P-0010979-T02-IM5	SOMATIC	TBX3	TBX3	12	12	115121079	115414371	5-UTR of TBX3(-): 74bp before coding start	IGR: 306Kb before TBX3(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.-74_chr12:g.115414371del	PRECISE		MANUAL_OK	3to5	-	293292	NA	0	26	20	25
P-0008838-T01-IM5	SOMATIC	IFNGR1	OLIG3	6	6	137519327	137953996	Exon 7 of IFNGR1(-)	IGR: 141Kb before OLIG3(-)	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement : c.1311:IFNGR1_chr6:g.137953996inv	PRECISE		MANUAL_OK	3to3	-	434669	NA	0	5	20	5
P-0003128-T01-IM5	SOMATIC	GLI1	KCNMB4	12	12	57864707	70833742	Exon 11 of GLI1(+)	IGR: 9Kb after KCNMB4(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	12969035	NA	0	74	39	174
P-0003128-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55181166	55223285	Intron of EGFR(+): 29Kb before exon 2	Intron of EGFR(+): 238bp before exon 8	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	42119	NA	0	5	6	5
P-0011348-T01-IM5	SOMATIC	TET2	NR3C2	4	4	106155458	149276942	Exon 3 of TET2(+)	Intron of NR3C2(-): 79Kb after exon 2	GRCh37	INVERSION	NR3C2 (NM_000901) - TET2 (NM_001127208) rearrangement: c.1757+79314:NR3C2_c.359:TET2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (NR3C2-TET2)	43121484	NA	0	9	15	9
P-0004638-T01-IM5	SOMATIC	PDZRN4	NAB2	12	12	41710849	57486631	Intron of PDZRN4(+): 123Kb after exon 3	Intron of NAB2(+): 69bp before exon 4	GRCh37	DELETION	PDZRN4 (NM_001164595) - NAB2 (NM_005967) -  rearrangement: c.843+122859:PDZRN4_c.1092-69:NAB2del.	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (PDZRN4-NAB2)	15775782	NA	0	13	28	13
P-0010504-T01-IM5	SOMATIC	SDCCAG8	AKT3	1	1	243661258	243663054	Intron of SDCCAG8(+): 2Kb before exon 18	Exon 13 of AKT3(-)	GRCh37	DELETION	AKT3 (NM_181690) rearrangement: c.1389_*6+1781del	PRECISE		MANUAL_OK	3to5	Antisense fusion	1796	NA	0	11	17	10
P-0014366-T01-IM6	SOMATIC	FBN2	RAD50	5	5	127764090	131893091	Intron of FBN2(-): 18Kb after exon 7	Exon 1 of RAD50(+)	GRCh37	INVERSION	RAD50 (NM_005732) - FBN2 (NM_001999) rearrangement: c.75:RAD50_c.952+18084:FBN2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (RAD50-FBN2)	4129001	NA	0	13	16	13
P-0014755-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980095	201981303	5-UTR of ELF3(+): 170bp before coding start	Exon 3 of ELF3(+)	GRCh37	DUPLICATION	ELF3 (NM_004433) rearrangement: c.-8-162_c.382dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1208	NA	0	9	13	9
P-0011438-T01-IM5	SOMATIC	CD274	LPIN1	9	2	5465592	11982660	Exon 5 of CD274(+)	IGR: 15Kb after LPIN1(+)	GRCh37	TRANSLOCATION	CD274 (NM_014143) rearrangement : t(2;9)(p25.1;p24.1)(chr2:g.11982660::chr9:g.5465592)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	12	11	12
P-0008677-T01-IM5	SOMATIC	PDGFRA	PDGFRA	4	4	55138669	55140722	Exon 9 of PDGFRA(+)	Exon 11 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement : c.1346_1583del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2053	NA	0	14	23	14
P-0009106-T01-IM5	SOMATIC	KIT	KDR	4	4	55565651	55991575	Intron of KIT(+): 145bp before exon 4	5-UTR of KDR(-): 115bp before coding start	GRCh37	DUPLICATION	KIT (NM_000222) - KDR (NM_002253) rearrangement: c.620-145:KIT_c.-115:KDRdup	PRECISE		MANUAL_OK	5to3	-	425924	NA	0	5	14	5
P-0012142-T01-IM5	SOMATIC	ZFAND1	PIK3R1	8	5	82618895	67589202	Intron of ZFAND1(-): 4Kb before exon 7	Exon 4 of PIK3R1(+)	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;8)(q13.1;q21.13)(chr5:g.67589202::chr8:g.82618895)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	9	32
P-0012566-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187554983	187612982	Intron of FAT1(-): 6bp before exon 7	Intron of FAT1(-): 15Kb after exon 2	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3265+14735_c.4184-6del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: in frame	57999	NA	0	9	13	9
P-0000447-T01-IM3	SOMATIC	PTEN	PTEN	10	10	89718714	89720711	Intron of PTEN(+): 938bp after exon 7	Exon 8 of PTEN(+)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	1997	NA	0	21	38	14
P-0008994-T01-IM5	SOMATIC	CDH1	CDH1	16	16	68843158	68849660	Intron of CDH1(+): 407bp after exon 5	Exon 10 of CDH1(+)	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement : c.687+407_1563dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6502	NA	0	10	25	9
P-0008649-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1737304	1808878	Intron of TACC3(+): 154bp before exon 8	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (exons 1-18 of FGFR3 fused to exons 7-16 of TACC3): c.2310:FGFR3_c.1645-1546:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	71574	NA	0	101	141	105
P-0004827-T01-IM5	SOMATIC	TP53	TP53	17	17	7579591	7581279	Intron of TP53(-): 1bp before exon 4	5-UTR of TP53(-): 1Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement : c.-28-1339_97-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1688	NA	0	20	25	19
P-0004827-T01-IM5	SOMATIC	USP34	XPO1	2	2	61438080	61726809	Intron of USP34(-): 827bp after exon 69	Intron of XPO1(-): 39bp after exon 7	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement : c.590+39:XPO1_c.8840+827:USP34del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (XPO1-USP34)	288729	NA	0	15	19	15
P-0005855-T01-IM5	SOMATIC	HIST1H4B	HIST1H3B	6	6	26025427	26032186	IGR: 2Kb before HIST1H4B(-)	Exon 1 of HIST1H3B(-)	GRCh37	DUPLICATION	HIST1H3B (NM_003537) rearrangement: c.103:HIST1H3B_chr:6g.26025427dup	PRECISE		MANUAL_OK	5to3	-	6759	NA	0	43	80	37
P-0005855-T01-IM5	SOMATIC	PAX5	PAX5	9	9	36923396	36929355	Exon 7 of PAX5(-)	Intron of PAX5(-): 6Kb before exon 7	GRCh37	DUPLICATION	PAX5 (NM_016734) rearrangement: c.781-5874_c.866dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5959	NA	0	23	34	20
P-0010984-T01-IM5	SOMATIC	MLL	MLL	11	11	118370457	118378653	Intron of MLL(+): 93bp before exon 24	Intron of MLL(+): 329bp after exon 28	GRCh37	DUPLICATION	MLL (NM_001197104) rearrangement: c.6080-93_c.10835+329dup	IMPRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	8196	NA	0	11	0	9
P-0010984-T01-IM5	SOMATIC	ROS1	SLC4A4	6	4	117646719	72429843	Intron of ROS1(-): 668bp after exon 33	Intron of SLC4A4(+): 237bp after exon 24	GRCh37	TRANSLOCATION	SLC4A4 (NM_001134742) - ROS1 (NM_002944) rearrangement: t(4;6)(q13.3;q22.1)(chr4:g.72429843::chr6:g.117646719)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SLC4A4-ROS1)	0	NA	0	54	34	52
P-0004967-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2125903	2127674	Intron of TSC2(+): 10bp after exon 23	Exon 26 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement : c.2639+10_2913del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1771	NA	0	102	143	154
P-0007852-T02-IM5	SOMATIC	TERT	SUB1	5	5	1260584	32544184	Intron of TERT(-): 5bp after exon 12	IGR: 41Kb before SUB1(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement : c.2970+5:TERT_chr5:g.32544184del	PRECISE		MANUAL_OK	3to5	-	31283600	NA	0	15	31	15
P-0007852-T02-IM5	SOMATIC	CDH12	RAI14	5	5	21824669	34625690	Intron of CDH12(-): 7Kb before exon 9	IGR: 31Kb before RAI14(+)	GRCh37	INVERSION	CDH12 (NM_004061) rearrangement : c.815-7428:CDH1_chr5:g.34625690inv	PRECISE		MANUAL_OK	5to5	-	12801021	NA	0	19	31	20
P-0003625-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89346182	89512768	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-): 129Kb before coding start	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	166586	NA	0	23	25	23
P-0009728-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870493	42867606	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1101:TMPRSS2_c.40-52949:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2997113	NA	0	57	57	53
P-0001044-T01-IM3	SOMATIC	NF1	NF1	17	17	29626304	29663799	Intron of NF1(+): 27Kb before exon 36	Exon 41 of NF1(+)	GRCh37	INVERSION	None	PRECISE		MANUAL_OK	3to3	Antisense fusion	37495	NA	0	14	28	8
P-0005529-T01-IM5	SOMATIC	CUL1	EZH2	7	7	148489819	148507391	Exon 17 of CUL1(+)	Intron of EZH2(-): 34bp after exon 17	GRCh37	DELETION	EZH2 (NM_004456) - CUL1 (NM_003592) rearrangement: c.2029+34:EZH2_c.1808:CUL1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	17572	NA	0	23	41	23
P-0010264-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88588255	12014962	Intron of NTRK3(-): 12Kb before exon 13	Intron of ETV6(+): 7Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_0010112338) fusion (ETV6 exons 1-4 fused in frame with NTRK3 exons 13-20): t(12;15)(p13.2;q25.3)(chr12:g.12014962::chr15:g.88588255)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	40	13	34
P-0011276-T01-IM5	SOMATIC	ASXL1	ASXL1	20	20	30996331	31017710	Intron of ASXL1(+): 20Kb before exon 4	Exon 7 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.253-19600_c.572dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	21379	NA	0	32	60	32
P-0009328-T01-IM5	SOMATIC	PAK1	PAK1	11	11	77090444	77109398	Intron of PAK1(-): 11bp before exon 4	5-UTR of PAK1(-): 6Kb before coding start	GRCh37	DELETION	PAK1 (NM_002576) rearrangement : c.-21-5812_292-11del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	18954	NA	0	14	19	14
P-0009328-T01-IM5	SOMATIC	EPCAM	NRXN1	2	2	47604201	51077437	Exon 5 of EPCAM(+)	Intron of NRXN1(-): 72Kb after exon 5	GRCh37	DELETION	EPCAM (NM_002354) - NRXN1 (NM_004801) rearrangement : c.540:EPCAM_c.832+71570:NRXN1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	3473236	NA	0	24	23	24
P-0013882-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3778379	3859925	Exon 31 of CREBBP(-)	Intron of CREBBP(-): 679bp after exon 3	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.975+679_c.6669del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	81546	NA	0	5	2	5
P-0006711-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11972382	12020736	Intron of ETV6(+): 20Kb before exon 3	Intron of ETV6(+): 2Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.164-19692_c.464-1622dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	48354	NA	0	12	24	12
P-0008749-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29683810	128678817	Intron of EWSR1(+): 687bp after exon 6	Intron of FLI1(+): 235bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) Rearrangement : t(11;22)(11q24.3;22q12.2)(chr11:g.128678817::chr22:g.29683810)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	65	36	63
P-0001428-T01-IM3	SOMATIC	PARD3B	ERBB4	2	2	205485556	212252597	Intron of PARD3B(+): 65Kb before exon 2	Intron of ERBB4(-): 73bp after exon 26	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Antisense fusion	6767041	NA	0	5	4	5
P-0001428-T01-IM3	SOMATIC	FAT1	FAT1	4	4	187524425	187628066	Exon 19 of FAT1(-)	Exon 2 of FAT1(-)	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	103641	NA	0	5	7	5
P-0001428-T01-IM3	SOMATIC	FAT1	FAT1	4	4	187591300	187628255	Intron of FAT1(-): 7Kb before exon 3	Exon 2 of FAT1(-)	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	36955	NA	0	6	5	7
P-0011268-T01-IM5	SOMATIC	B2M	TRIM69	15	15	45003743	45044078	5-UTR of B2M(+): 2bp before coding start	Intron of TRIM69(+): 3Kb before exon 2	GRCh37	DELETION	B2M (NM_004048) - TRIM69 (NM_182985) rearrangement: c.-2:B2M_c.7-3020:TRIM69del	PRECISE		MANUAL_OK	3to5	Transcript fusion (B2M-TRIM69)	40335	NA	0	5	13	5
P-0010113-T01-IM5	SOMATIC	SLC12A7	TERT	5	5	1085392	1295028	Exon 7 of SLC12A7(-)	Exon 1 of TERT(-)	GRCh37	DUPLICATION	SLC12A7 (NM_006598) - TERT (NM_198253) rearrangement: c.872:SLC12A7_c.77:TERTdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (SLC12A7-TERT)	209636	NA	0	5	17	5
P-0010113-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21968886	21971780	Intron of CDKN2A(-): 645bp before exon 3	Intron of CDKN2A(-): 573bp before exon 2	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.194-573_c.*102-645del CDKN2Ap16INK4A (NM_000077) rearrangement: c.151-573_c.458-645del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2894	NA	0	9	11	9
P-0008061-T01-IM5	SOMATIC	RAB9BP1	APC	5	5	104183424	112179262	IGR: 252Kb before RAB9BP1(+)	Exon 16 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: chr5:g.104183424_c.797inv	PRECISE		MANUAL_OK	5to5	-	7995838	NA	0	5	21	5
P-0005080-T01-IM5	SOMATIC	CDK8	CDK8	13	13	26827477	26828848	Promoter of CDK8(+): 1Kb from tx start	Exon 1 of CDK8(+)	GRCh37	DELETION	CDK8(NM_001260)  Rearrangement :  c.-1302_70del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1371	NA	0	70	62	68
P-0006380-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27016385	27059094	IGR: 6Kb before ARID1A(+)	Intron of ARID1A(+): 73bp before exon 4	GRCh37	DELETION	ARID1A (NM_006015) Rearrangement :  chr1:g.27016385_c.1804-73del	PRECISE		MANUAL_OK	3to5	-	42709	NA	0	50	47	25
P-0008304-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866434	42871261	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-1145:TMPRSS2_c.40-48890:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3004827	NA	0	26	30	26
P-0008304-T01-IM5	SOMATIC	TMPRSS2	MYL5	21	4	42871261	674327	Intron of TMPRSS2(-): 1Kb before exon 2	Exon 5 of MYL5(+)	GRCh37	TRANSLOCATION	MYL5 (NM_002477) - TMPRSS2 (NM_001135099) rearrangement : t(4;21)(p16.3;q22.3)(chr4:g.674327::chr21:g.42871261)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MYL5-TMPRSS2)	0	NA	0	24	17	24
P-0012176-T01-IM5	SOMATIC	GOSR1	NF1	17	17	28802813	29496867	Promoter of GOSR1(+): 2Kb from tx start	Intron of NF1(+): 42bp before exon 5	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement : chr17:g.28802813_c.480-42:NF1del	PRECISE		MANUAL_OK	3to5	Transcript fusion (GOSR1-NF1)	694054	NA	0	8	16	8
P-0000584-T03-IM6	SOMATIC	MAP3K14	PRKCA	17	17	43344831	64282318	Exon 12 of MAP3K14(-)	IGR: 17Kb before PRKCA(+)	GRCh37	INVERSION	MAP3K14 (NM_003954): chr17:g.64282318_c.2267:MAP3K14inv	PRECISE		MANUAL_OK	5to5	-	20937487	NA	0	31	26	18
P-0005307-T01-IM5	SOMATIC	FYN	NT5DC1	6	6	112029303	116410524	Intron of FYN(-): 80bp before exon 6	IGR: 11Kb before NT5DC1(+)	GRCh37	DELETION	FYN (NM_153047) rearrangement:  c.345-80_chr6:g.116410524del	PRECISE		MANUAL_OK	3to5	-	4381221	NA	0	6	13	6
P-0012132-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867415	42868520	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1526:TMPRSS2_c.18+2872:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3001105	NA	0	49	60	49
P-0006086-T01-IM5	SOMATIC	HELZ	NEGR1	17	1	65231020	72748066	5-UTR of HELZ(-): 16Kb before coding start	Exon 1 of NEGR1(-)	GRCh37	TRANSLOCATION	HELZ (NM_014877) - NEGR1 (NM_173808) Rearrangement :  t(17;1)(chr17q24.2;chr1p31.1)(chr17:g.65231020::chr1:g.72748066)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (HELZ-NEGR1)	0	NA	0	18	0	16
P-0010361-T01-IM5	SOMATIC	BTK	TSC22D2	X	3	100605050	149988968	Intron of BTK(-): 106bp before exon 19	IGR: 138Kb before TSC22D2(+)	GRCh37	TRANSLOCATION	BTK (NM_000061) rearrangement: t(3;X)(q25.1;q22.1)(chr3:g.149988968::chrX:g.100605050)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	36	25	34
P-0008373-T01-IM5	SOMATIC	MYC	MYC	8	8	128706398	128753296	IGR: 42Kb before MYC(+)	3-UTR of MYC(+): 92bp after coding stop	GRCh37	DUPLICATION	MYC (NM_002467) rearrangement : chr8:g.128706398_c.*92:MYC:dup	PRECISE		MANUAL_OK	5to3	-	46898	NA	0	9	9	8
P-0010084-T01-IM5	SOMATIC	AATF	SOX9	17	17	35352875	70122378	Intron of AATF(+): 5Kb after exon 8	3-UTR of SOX9(+): 2Kb after coding stop	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: chr17:g. 35352875_c.*1850:SOX9del	PRECISE		MANUAL_OK	3to5	-	34769503	NA	0	17	53	17
P-0008169-T01-IM5	SOMATIC	ATRX	ATRX	X	X	76763526	76937408	3-UTR of ATRX(-): 303bp after coding stop	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489)  rearrangement: c.3340_c.*303inv	PRECISE		MANUAL_OK	3to3	-	173882	NA	0	29	24	25
P-0013385-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89709805	89711907	Intron of PTEN(+): 2Kb before exon 6	Exon 6 of PTEN(+)	GRCh37	INVERSION	PTEN (NM_000314)  rearrangement: c.493-2070_c.525inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	2102	NA	0	14	31	11
P-0012205-T01-IM5	SOMATIC	FGFR3	FGFR3	4	4	1808637	1810481	Exon 17 of FGFR3(+)	3-UTR of FGFR3(+): 1Kb after coding stop	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.2250_c.*1492del	PRECISE		MANUAL_OK	3to5	-	1844	NA	0	101	105	101
P-0005989-T01-IM5	SOMATIC	EWSR1	C11orf49	22	11	29684748	46952688	Exon 7 of EWSR1(+)	IGR: 6Kb before C11orf49(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) Translocation: t(11,22)(11p11.2;22q12.2)(chr11:g.46952688::chr22:g.29684796)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	16	33	3
P-0005989-T01-IM5	SOMATIC	EWSR1	CREB1	22	2	29684796	208435422	Intron of EWSR1(+): 21bp after exon 7	Intron of CREB1(+): 377bp after exon 5	GRCh37	TRANSLOCATION	CREB1 (NM_052854) - EWSR1 (NM_013986) Translocation: t(2,22)(2q33.3;22q12.2)(chr2:g.208435422::chr22:g.29684796)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (CREB1-EWSR1)	0	NA	0	11	0	11
P-0005064-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858792	42870659	Intron of ERG(-): 11Kb after exon 1	Intron of TMPRSS2(-): 543bp before exon 2	GRCh37	DELETION	TMPRSS2(NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon1 ERG exon2 ) :  c.56-543:TMPRSS2_c.18+11495:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3011867	NA	0	50	51	48
P-0003863-T01-IM5	SOMATIC	FLT4	FLT4	5	5	180049922	180052438	Intron of FLT4(-): 83bp before exon 12	Intron of FLT4(-): 431bp after exon 10	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.1421+431_c.1549-83:FLT4del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	2516	NA	0	15	27	20
P-0008232-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876702	42868959	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-11) : c.126+1087:TMPRSS2_c.40-59158:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2992257	NA	0	12	9	7
P-0013858-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39898195	42875533	Intron of ERG(-): 49Kb after exon 3	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons  4-11) c.55+4344:TMPRSS2_c.39+49391:ERGdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2977338	NA	0	15	0	14
P-0010817-T01-IM5	SOMATIC	PALB2	PALB2	16	16	23620656	23634364	Intron of PALB2(-): 1Kb before exon 12	Exon 9 of PALB2(-)	GRCh37	INVERSION	PALB2 (NM_024675) Rearrangement :  c.2922_3202-1323inv	PRECISE		MANUAL_OK	3to3	-	13708	NA	0	52	51	51
P-0011439-T01-IM5	SOMATIC	CHEK1	CDON	11	11	125499385	125970119	Intron of CHEK1(+): 30bp after exon 5	IGR: 37Kb after CDON(-)	GRCh37	DELETION	CHEK1 (NM_001274) rearrangement : c.424+30:CHEK1_chr11:125970119del	PRECISE		MANUAL_OK	3to5	-	470734	NA	0	99	56	93
P-0012257-T01-IM5	SOMATIC	LPCAT2	FGFR3	16	4	55556795	1808759	Intron of LPCAT2(+): 3Kb before exon 2	Intron of FGFR3(+): 84bp before exon 18	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - LPCAT2 (NM_017839) rearrangement: t(4;16)(p16.3;q12.2)(chr4:g.1808759::chr16:g.55556795)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-LPCAT2)	0	NA	0	100	0	99
P-0013121-T03-IM5	SOMATIC	LMNA	NTRK1	1	1	156109782	156845185	3-UTR of LMNA(+): 885bp after coding stop	Intron of NTRK1(+): 127bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.*885:LMNA_c.1355-127:NTRK1del	PRECISE		MANUAL_OK	3to5	-	735403	NA	0	35	112	35
P-0013121-T02-IM5	SOMATIC	LMNA	NTRK1	1	1	156109782	156845185	3-UTR of LMNA(+): 885bp after coding stop	Intron of NTRK1(+): 127bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.*885:LMNA_c.1355-127:NTRK1del	PRECISE		MANUAL_OK	3to5	-	735403	NA	0	101	141	157
P-0013196-T02-IM6	SOMATIC	NTRK3	ETV6	15	12	88501357	12036072	Intron of NTRK3(-): 17Kb before exon 14	Intron of ETV6(+): 1Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exon5 fused to NTRK3 exon15): t(12;15)(p13.2;q25.3)(chr12:g.12036072::chr15:g.88501357)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	102	39	140
P-0012497-T02-IM5	SOMATIC	EWSR1	ATF1	22	12	29687613	51206235	Intron of EWSR1(+): 25bp after exon 8	Intron of ATF1(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - ATF1 (NM_005171) Fusion (EWSR1 exons 1-9 fused with ATF1 exons 5-7) : t(12;22)(q13;q12)(chr12:g.51206235::chr22:g.29687613)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-ATF1)	0	NA	0	36	18	35
P-0020491-T01-IM6	SOMATIC	ATXN7L3B	POLE	12	12	74843421	133219166	IGR: 88Kb before ATXN7L3B(+)	Exon 37 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: chr12:g.74843421_c.4878Ginv	PRECISE		MANUAL_OK	3to3	-	58375745	NA	0	29	10	29
P-0014859-T03-IM6	SOMATIC	CTRC	NTRK1	1	1	15766843	156841593	Exon 2 of CTRC(+)	Intron of NTRK1(+):46bp after exon 7	GRCh37	DELETION	CTRC (NM_007272) - NTRK1 (NM_002529) rearrangement: c.88:CTRC_c.850+46:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CTRC:NTRK1}	141074750	NA	0	44	10	44
P-0020494-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52440907	52442408	Exon 8 of BAP1(-)	Intron of BAP1(-):81bp after exon 4	GRCh37	DELETION	BAP1 (NM_004656):  c.255+82_c.597del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1501	NA	0	41	10	65
P-0020510-T01-IM6	SOMATIC	CYP2J2	NEGR1	1	1	60397492	72747958	IGR: 39Kb before CYP2J2(-)	Intron of NEGR1(-):43bp after exon 1	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: chr1:g.60397492_chr1:g.72747958del	PRECISE		MANUAL_OK	3to5	-	12350466	NA	0	38	10	39
P-0020420-T01-IM6	SOMATIC	DIS3	DIS3	13	13	73336283	73342954	Intron of DIS3(-):8bp before exon 17	Exon 14 of DIS3(-)	GRCh37	DELETION	DIS3 (NM_014953) rearrangement: c.2128-8_c.1852del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6671	NA	0	2	10	2
P-0015826-T03-IM6	SOMATIC	ABHD3	FANCA	18	16	19233543	89839561	Intron of ABHD3(-):2Kb before exon 9	Intron of FANCA(-):117bp after exon 22	GRCh37	TRANSLOCATION	FANCA (NM_000135) - ABHD3 (NM_138340) rearrangement: t(16;18)(q24.3;q11.2)(chr16:g.89839561::chr18:g.19233543)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FANCA:ABHD3}	0	NA	0	16	10	16
P-0020515-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11145570	11146436	Intron of SMARCA4(+):19bp before exon 29	Intron of SMARCA4(+):628bp after exon 29	GRCh37	DUPLICATION	SMARCA4  (NM_003072) rearrangement:  c.3952-20_c.4170+628dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	866	NA	0	22	10	22
P-0020484-T01-IM6	SOMATIC	RNF43	TANC2	17	17	56492944	61251625	5-UTR of RNF43(-):61Kb before coding start	Intron of TANC2(+):20Kb before exon 4	GRCh37	INVERSION	RNF43 (NM_017763) Rearrangement : c.-6:RNF43_chr17:g.61251625inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {TANC2:RNF43}	4758681	NA	0	15	10	15
P-0020458-T01-IM6	SOMATIC	ROS1	EZR	6	6	117646033	159191589	Intron of ROS1(-):455bp before exon 34	Intron of EZR(-):206bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion (EZR exons 1-9 fused with ROS1 exons 34-43): c.1090+207:EZR_c.5558-455:ROS1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41545556	NA	0	24	0	23
P-0003329-T03-IM6	SOMATIC	LMNA	NTRK1	1	1	156100546	156845200	Exon 3 of LMNA(+)	Intron of NTRK1(+):111bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion (LMNA exons 1-2 fused to NTRK1 exons 12 - 17): c.495:LMNA_c.1355-112:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMNA:NTRK1}	744654	NA	0	32	10	32
P-0003329-T03-IM6	SOMATIC	AXIN1	AXIN1	16	16	343643	344783	Exon 8 of AXIN1(-)	Intron of AXIN1(-):1Kb before exon 8	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.2031_chr16:g.344783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1140	NA	0	27	10	35
P-0020457-T01-IM6	SOMATIC	PCM1	MET	8	7	17833391	116412178	Intron of PCM1(+):3Kb after exon 23	Intron of MET(+):135bp after exon 14	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(7;8)(q31.2;p22)(chr7:g.116412178::chr8:g.17833391)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PCM1:MET}	0	NA	0	73	10	72
P-0020615-T01-IM6	SOMATIC	NF1	NF1	17	17	29491476	29556580	Intron of NF1(+):1Kb after exon 4	Intron of NF1(+):97bp after exon 21	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.479+1082_c.2850+97dup	PRECISE		MANUAL_OK	5to3	Duplication of 17 exons : out of frame	65104	NA	0	11	10	13
P-0020499-T01-IM6	SOMATIC	PARP1	PARP1	1	1	226542899	226549174	IGR: 5Kb before PARP1(-)	Exon 23 of PARP1(-)	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: chr1:g.226542899_c.3032inv	PRECISE		MANUAL_OK	3to3	-	6275	NA	0	24	10	23
P-0020579-T01-IM6	SOMATIC	TOP1	GLYATL2	20	11	39706279	58574196	Intron of TOP1(+):2bp after exon 5	IGR: 27Kb before GLYATL2(-)	GRCh37	TRANSLOCATION	TOP1 (NM_003286) rearrangement: t(11;20)(q12.2;q12)(chr11:g.58574196::chr20:g.39706279)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0014821-T02-IM6	SOMATIC	MGA	SPTBN5	15	15	41988986	42147224	Exon 3 of MGA(+)	Intron of SPTBN5(-):50bp before exon 56	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.1778:MGA_chr15:g.42147224del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	158238	NA	0	7	10	9
P-0020644-T01-IM6	SOMATIC	SHANK2	AGO2	11	8	70919699	141542519	5-UTR of SHANK2(-):601Kb before coding start	Exon 18 of AGO2(-)	GRCh37	TRANSLOCATION	AGO2 (NM_012154) - SHANK2 (NM_012309) rearrangement: t(8;11)(q24.3;q13.4)(chr8:g.141542519::chr11:g.70919699)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0020644-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57478864	57480500	Intron of GNAS(+):18bp after exon 5	Exon 6 of GNAS(+)	GRCh37	DELETION	GNAS (NM_000516) rearrangement: c.432+18_c.495del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1636	NA	0	46	10	46
P-0020644-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397700	139399962	Exon 27 of NOTCH1(-)	Exon 25 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.4386_c.5101del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2262	NA	0	65	10	71
P-0020588-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63661191	63759813	5-UTR of ARID5B(+):277bp before coding start	Intron of ARID5B(+):36bp before exon 4	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.-278_c.503-37del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	98622	NA	0	14	10	15
P-0020701-T01-IM6	SOMATIC	ATRX	FOXO3	X	6	76889220	108910877	Intron of ATRX(-):20bp before exon 18	Intron of FOXO3(+):28Kb after exon 1	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement: t(6;X)(q21;q21.1)(chr6:g.108910877::chrX:g.76889220)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0020730-T01-IM6	SOMATIC	MAPK8IP3	NTHL1	16	16	1773119	2090049	Intron of MAPK8IP3(+):1Kb before exon 2	Intron of NTHL1(-):1bp before exon 6	GRCh37	INVERSION	MAPK8IP3 (NM_015133) - NTHL1 (NM_002528) rearrangement: c.319-1439:MAPK8IP3_c.816-1:NTHL1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MAPK8IP3:NTHL1}	316930	NA	0	47	10	45
P-0020730-T01-IM6	SOMATIC	OCEL1	BABAM1	19	19	17334216	17384784	Promoter of OCEL1(+):3Kb from tx start	Exon 4 of BABAM1(+)	GRCh37	INVERSION	BABAM1 (NM_001033549) rearrangement: g.17334216_c.416inv	PRECISE		MANUAL_OK	5to5	-	50568	NA	0	5	10	7
P-0020585-T01-IM6	SOMATIC	NF2	RBBP8	22	18	30070884	20498773	Exon 13 of NF2(+)	IGR: 15Kb before RBBP8(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(18;22)(q11.2;q12.2)(chr18:g.20498773::chr22:g.30070884)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	14
P-0020649-T01-IM6	SOMATIC	PALLD	CTNNB1	4	3	169820018	41275813	Intron of PALLD(+):153bp after exon 12	Intron of CTNNB1(+):25bp after exon 10	GRCh37	TRANSLOCATION	CTNNB1 (NM_00190) - PALLD (NM_001166108) rearrangement: t(3;4)(p22.1;q32.3)(chr3:g.41275813::chr4:g.169820018)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	73	10	71
P-0020683-T01-IM6	SOMATIC	FGFR3	SLIT2	4	4	1808928	20464483	Exon 18 of FGFR3(+)	Intron of SLIT2(+):5Kb before exon 5	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.2360:FGFR3_chr4:g.20464483inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	18655555	NA	0	5	7	5
P-0020639-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187624671	187629031	Intron of FAT1(-):3Kb after exon 2	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.1951_c.3265+3046del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4360	NA	0	11	10	11
P-0020501-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148544346	148569682	Exon 2 of EZH2(-)	5-UTR of EZH2(-):65Kb before coding start	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.-8+11574_c.45del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25336	NA	0	19	10	19
P-0020764-T01-IM6	SOMATIC	MAP3K1	KIAA0825	5	5	56183989	93660865	Intron of MAP3K1(+):63bp before exon 19	Intron of KIAA0825(-):59Kb after exon 20	GRCh37	INVERSION	KIAA0825 (NM_001145678) - MAP3K1 (NM_005921) rearrangement: c.3710+59208:KIAA0852_c.4258-64:MAP3K1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KIAA0825:MAP3K1}	37476876	NA	0	4	7	4
P-0020661-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11977923	12010834	Intron of ETV6(+):14Kb before exon 3	Intron of ETV6(+):4Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.164-14151_c.463+4339dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	32911	NA	1	24	10	23
P-0020586-T01-IM6	SOMATIC	TMED1	CD79A	19	19	10947654	42384960	Promoter of TMED1(-):5Kb from tx start	Exon 5 of CD79A(+)	GRCh37	INVERSION	CD79A (NM_001783) rearrangement: g.10947654_c.594del	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CD79A:TMED1}	31437306	NA	0	5	10	5
P-0020740-T01-IM6	SOMATIC	NELL1	KDR	11	4	20806663	55955845	Intron of NELL1(+):1Kb after exon 3	Intron of KDR(-):12bp after exon 24	GRCh37	TRANSLOCATION	KDR (NM_002253) - NELL1 (NM_006157) rearrangement: t(4;11)(q12;p15.1)(chr4:g.55955845::chr11:g.20806663)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KDR:NELL1}	0	NA	0	10	10	12
P-0020740-T01-IM6	SOMATIC	BHLHE22	KDR	8	4	65494096	55981420	Exon 1 of BHLHE22(+)	Intron of KDR(-):27bp after exon 4	GRCh37	TRANSLOCATION	KDR (NM_002253) rearrangement: t(4;8)(q12;q12.3)(chr4:g.55981420::chr8:g.65494096)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	13	10	13
P-0004242-T02-IM6	SOMATIC	BCORL1	EP300	X	22	129153476	41574759	Intron of BCORL1(+):1Kb before exon 4	Exon 31 of EP300(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) - BCORL1 (NM_021946) rearrangement: t(X;22)(q26.1;q13.2)(chrX:g.129153476::chr22:g.41574759)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EP300:BCORL1}	0	NA	0	188	10	216
P-0020702-T01-IM6	SOMATIC	SUZ12	NOL11	17	17	30302430	65717654	Intron of SUZ12(+):70bp before exon 7	Intron of NOL11(+):12bp after exon 4	GRCh37	INVERSION	SUZ12 (NM_015355) rearrangement: c.592-71_g.65717654inv	PRECISE		MANUAL_OK	5to5	-	35415224	NA	0	3	10	6
P-0020675-T01-IM6	SOMATIC	CARM1	KRT19	19	17	11024616	39685231	Exon 6 of CARM1(+)	Promoter of KRT19(-):5Kb from tx start	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(17;19)(q21.2;p13.2)(chr17:g.39685231::chr19:g.11024616)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	29	10	32
P-0020678-T01-IM6	SOMATIC	KRT6A	NAB2	12	12	52882906	57486817	Intron of KRT6A(-):574bp before exon 7	Intron of NAB2(+):28bp before exon 5	GRCh37	INVERSION	KRT6A (NM_005554) - NAB2 (NM_005967) rearrangement: c.1204-574:KRT6A_c.1144-29:NAB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KRT6A:NAB2}	4603911	NA	0	57	10	82
P-0020763-T01-IM6	SOMATIC	AEBP2	RECQL	12	12	19703521	21624495	IGR: 110Kb before AEBP2(+)	Exon 14 of RECQL(-)	GRCh37	DELETION	AEBP2 (NM_001114176) - RECQL (NM_032941) rearrangement: g.19703521_c.1534Gdel	PRECISE		MANUAL_OK	3to5	-	1920974	NA	0	33	10	33
P-0020686-T01-IM6	SOMATIC	R3HDM2	GLI1	12	12	57649272	57865068	Intron of R3HDM2(-):376bp before exon 22	Exon 12 of GLI1(+)	GRCh37	INVERSION	GLI1 (NM_005269) - R3HDM2 (NM_014925) rearrangement: chr12:g.57649272_c.2545:GLI1inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GLI1:R3HDM2}	215796	NA	0	20	0	20
P-0020628-T01-IM6	SOMATIC	CDK12	NEUROD2	17	17	37687098	37695018	Exon 14 of CDK12(+)	IGR: 65Kb before NEUROD2(-)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.4002_g.37695018inv	PRECISE		MANUAL_OK	5to5	-	7920	NA	0	7	10	8
P-0020632-T01-IM6	SOMATIC	BRCA1	METTL25	17	12	41234512	82861393	Exon 12 of BRCA1(-)	Intron of METTL25(+):9Kb before exon 10	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) - METTL25 (NM_032230) rearrangement: t(12;17)(q21.31;q21.31)(chr12:g.82861393::chr17:g.41234512)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRCA1:METTL25}	0	NA	0	9	10	9
P-0020632-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41219889	41234296	Intron of BRCA1(-):177bp before exon 16	Intron of BRCA1(-):124bp after exon 12	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.4357+125_c.4987-177del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	14407	NA	0	6	7	6
P-0020632-T01-IM6	SOMATIC	ROS1	SOD2	6	6	117659918	160091465	Intron of ROS1(-):1Kb before exon 31	IGR: 9Kb before SOD2(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: chr6:g.160091465_c.5080-1415:ROS1inv	PRECISE		MANUAL_OK	3to3	-	42431547	NA	0	36	10	35
P-0013196-T04-IM6	SOMATIC	NTRK3	ETV6	15	12	88501357	12036072	Intron of NTRK3(-):17Kb before exon 15	Intron of ETV6(+):1Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exon5 fused to NTRK3 exon15): t(12;15)(p13.2;q25.3)(chr12:g.12036072::chr15:g.88501357)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	112	10	110
P-0020677-T01-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48891905	79960628	Intron of TFE3(-):139bp before exon 6	Intron of ASPSCR1(+):6Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused with TFE3 exons 6-10) : t(X;17)(p11.23;q25.3)(chrX:g.48891905::chr17:g.79960628)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	11	10	19
P-0020482-T02-IM6	SOMATIC	RAD21	RAD21	8	8	117833120	117864336	IGR: 25Kb before RAD21(-)	Intron of RAD21(-):1bp before exon 11	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: chr8:g.117833120_c.1322-1:RAD21del	PRECISE		MANUAL_OK	3to5	-	31216	NA	0	10	10	11
P-0020760-T01-IM6	SOMATIC	VHL	VHL	3	3	10182239	10183614	Promoter of VHL(+):1Kb from tx start	Exon 1 of VHL(+)	GRCh37	DELETION	VHL (NM_000551) rearrangement: c.-1293_c.83del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1375	NA	0	42	10	48
P-0020584-T01-IM6	SOMATIC	ALK	EML4	2	2	29447048	42478795	Intron of ALK(-):654bp before exon 20	Intron of EML4(+):5Kb before exon 3	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused to ALK exon 20-29) : c.209-4846:EML4_c.3173-654:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13031747	NA	0	42	10	41
P-0020684-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8410441	8518093	Intron of PTPRD(-):6Kb before exon 36	Exon 21 of PTPRD(-)	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4087-5781_c.1298del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	107652	NA	0	7	6	7
P-0019030-T02-IM6	SOMATIC	PTCD3	BCL2L11	2	2	86352448	111883044	Intron of PTCD3(+):129bp before exon 11	Intron of BCL2L11(+):1Kb after exon 2	GRCh37	DUPLICATION	BCL2L11 (NM_138621) - PTCD3(NM_017952) rearrangement: c.394+1328_c.805-130dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCL2L11:PTCD3}	25530596	NA	0	29	10	30
P-0019030-T02-IM6	SOMATIC	HIST1H3A	HIST1H3B	6	6	26021830	26032271	Promoter of HIST1H3A(+):1Kb from tx start	Exon 1 of HIST1H3B(-)	GRCh37	DELETION	HIST1H3B (NM_003537) rearrangement: g.26021830_c.18del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10441	NA	0	3	10	3
P-0020806-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27099056	27102516	Exon 13 of ARID1A(+)	Intron of ARID1A(+):318bp after exon 19	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3472_c.5124+318del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3460	NA	0	40	0	43
P-0020714-T01-IM6	SOMATIC	ARID1A	ZDHHC18	1	1	27023979	27158533	Exon 1 of ARID1A(+)	Intron of ZDHHC18(+):404bp before exon 2	GRCh37	DELETION	ARID1A (NM_006015) - ZDHHC18 (NM_032283) rearrangement: c.1085:ARID1A_c.336-405:ZDHHC18del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:ZDHHC18}	134554	NA	0	18	10	18
P-0020714-T01-IM6	SOMATIC	PRTN3	DOT1L	19	19	844340	2199928	Intron of PRTN3(+):306bp after exon 3	Exon 8 of DOT1L(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) - PRTN3 (NM_002777) rearrangement: c.697:DOT1L_c.369+306:PRTN3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DOT1L:PRTN3}	1355588	NA	1	33	10	36
P-0020714-T01-IM6	SOMATIC	TONSL	RECQL4	8	8	145658574	145739466	Intron of TONSL(-):396bp after exon 22	Exon 12 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) - TONSL (NM_013432) rearrangement: c.1904:RECQL4_c.3559+39:TONSLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RECQL4:TONSL}	80892	NA	0	29	10	37
P-0020811-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55192211	55222778	Intron of EGFR(+):18Kb before exon 2	Intron of EGFR(+):744bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17768_c.890-745del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	30567	NA	0	95	10	286
P-0020811-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268627	55270335	Intron of EGFR(+):253bp before exon 25	Intron of EGFR(+):17bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-254_c.3271+17del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1708	NA	0	285	0	7740
P-0020755-T01-IM6	SOMATIC	FANCC	FANCC	9	9	97870621	97873846	Intron of FANCC(-):1Kb before exon 14	Exon 13 of FANCC(-)	GRCh37	DELETION	FANCC (NM_000136) rearrangement: c.1228_c.1330-1070del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3225	NA	0	32	10	33
P-0020861-T01-IM6	SOMATIC	AXL	CHEK2P2	19	15	41763332	20101904	Intron of AXL(+):65bp before exon 19	IGR: 386Kb before CHEK2P2(+)	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(15;19)(q11.1;q13.2)(chr15:g.20101904::chr19:g.41763332)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	5	0	6
P-0020833-T01-IM6	SOMATIC	FLCN	FOXP1	17	3	17129138	71571851	Intron of FLCN(-):351bp after exon 5	5-UTR of FOXP1(-):563Kb before coding start	GRCh37	TRANSLOCATION	FLCN (NM_144997) - FOXP1 (NM_001244814) rearrangement: t(3,17)(p13,p11.2)(chr3:g.71571851::chr17:g.17129138)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {FLCN:FOXP1}	0	NA	0	13	10	13
P-0020833-T01-IM6	SOMATIC	ZNF70	EWSR1	22	22	24063333	29693900	IGR: 20Kb before ZNF70(-)	Exon 14 of EWSR1(+)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: g.24063333:ZNF70_c.1393:EWSR1del	PRECISE		MANUAL_OK	3to5	-	5630567	NA	0	11	10	16
P-0020793-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591324	67812667	Intron of PIK3R1(+):8bp after exon 14	IGR: 224Kb before PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1814+8_g.67812667del	PRECISE		MANUAL_OK	3to5	-	221343	NA	0	6	10	6
P-0020884-T01-IM6	SOMATIC	TP53	TP53	17	17	7576934	7577695	Intron of TP53(-):8bp before exon 9	Intron of TP53(-):87bp before exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.920-8_c.673-87del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	761	NA	0	24	10	33
P-0020620-T01-IM6	SOMATIC	ZFHX3	LOC101928035	16	16	72821811	73987269	Exon 10 of ZFHX3(-)	IGR: 239Kb before LOC101928035(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.10364_g.73987269inv	PRECISE		MANUAL_OK	5to5	-	1165458	NA	0	3	10	3
P-0020620-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14229613	14627759	Promoter of PRKACA(-):27Kb from tx start	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: g.14229613_c.311del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJB1:PRKACA}	398146	NA	0	5	10	5
P-0020792-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39971635	42871157	3-UTR of ERG(-):62Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 3-11):c.56-1041:TMPRSS2_c.-149-14766:ERGdel	PRECISE		MANUAL_OK	3to5	-	2899522	NA	0	34	10	36
P-0020868-T01-IM6	SOMATIC	NF1	NF1	17	17	29557177	29559733	Intron of NF1(+):100bp before exon 23	Exon 26 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2991-101_c.3330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2556	NA	0	24	10	24
P-0020780-T01-IM6	SOMATIC	ALK	EML4	2	2	29447084	42523934	Intron of ALK(-):690bp before exon 20	Intron of EML4(+):1Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1 - 13 fused to ALK exons 20 - 29 ): c.1489+1278:EML4_c.3173-690:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076850	NA	0	100	10	98
P-0020876-T01-IM6	SOMATIC	APC	SRP19	5	5	112175192	112190069	Exon 16 of APC(+)	IGR: 7Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3901:APC_g.112190069:SRP19del	PRECISE		MANUAL_OK	3to5	-	14877	NA	0	7	10	7
P-0020831-T01-IM6	SOMATIC	SMO	KLHDC10	7	7	128852091	129721493	Exon 12 of SMO(+)	Intron of KLHDC10(+):11Kb after exon 1	GRCh37	DUPLICATION	SMO (NM_005631) rearrangement: c.166+10844:KLHDC10_c.2163:SMOdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KLHDC10:SMO}	869402	NA	0	26	10	27
P-0007231-T02-IM6	SOMATIC	PIK3CD	LINC01225	1	1	9784296	31964370	Intron of PIK3CD(+):37bp before exon 22	IGR: 7Kb before LINC01225(+)	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.2719-38_g.31964370del	PRECISE		MANUAL_OK	3to5	-	22180074	NA	0	9	10	11
P-0020799-T01-IM6	SOMATIC	RHOQ	MSH6	2	2	46800424	48032850	Intron of RHOQ(+):3Kb before exon 3	Intron of MSH6(+):4bp after exon 7	GRCh37	DUPLICATION	MSH6 (NM_000179) - RHOQ (NM_012249) rearrangement: c.3646+4:MSH6_c.202-2802:RHOQdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MSH6:RHOQ}	1232426	NA	0	3	6	3
P-0020773-T01-IM6	SOMATIC	FGFR3	BRE	4	2	1803105	28322454	Exon 5 of FGFR3(+)	Intron of BRE(+):30Kb before exon 8	GRCh37	TRANSLOCATION	BRE (NM_004899) - FGFR3 (NM_000142 ) rearrangement: t(2;4)(p23.2;p16.3)(chr2:g.28322454::chr4:g.1803105)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRE:FGFR3}	0	NA	0	9	10	9
P-0020829-T01-IM6	SOMATIC	CCND3	LPHN2	6	1	41903877	82121584	Intron of CCND3(-):32bp before exon 5	IGR: 44Kb before LPHN2(+)	GRCh37	TRANSLOCATION	CCND3 (NM_001760) rearrangement: t(1,6)(p31.1,p21.1)(chr1:g.82121584::chr6:g.41903877)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	33	10	34
P-0020882-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8326360	8340272	Intron of PTPRD(-):5Kb after exon 44	Intron of PTPRD(-):70bp after exon 42	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.5534+5222_c.5253+71del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	13912	NA	0	2	10	4
P-0020791-T01-IM6	SOMATIC	APC	SRP19	5	5	112176035	112192034	Exon 16 of APC(+)	IGR: 5Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4744_g.112192034del	PRECISE		MANUAL_OK	3to5	-	15999	NA	0	10	10	10
P-0020750-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39945578	42867090	Intron of ERG(-):2Kb after exon 3	Intron of TMPRSS2(-):585bp before exon 3	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+2008:ERG_c.127-585:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERG:TMPRSS2}	2921512	NA	0	4	10	16
P-0020620-T02-IM6	SOMATIC	ZFHX3	LOC101928035	16	16	72821811	73987269	Exon 10 of ZFHX3(-)	IGR: 239Kb before LOC101928035(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.10364_g.73987269inv	PRECISE		MANUAL_OK	5to5	-	1165458	NA	0	22	10	29
P-0020620-T02-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14229613	14627759	Promoter of PRKACA(-):27Kb from tx start	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: g.14229613_c.311del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJB1:PRKACA}	398146	NA	0	39	10	63
P-0020837-T01-IM6	SOMATIC	EWSR1	RBCK1	22	20	29694204	404212	Intron of EWSR1(+):265bp after exon 14	Intron of RBCK1(+):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(20,22)(p13,q12.2)(chr20:g.404212::chr22:g.29694204)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	6	10	6
P-0020777-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63721207	63816820	Intron of ARID5B(+):21Kb after exon 3	Intron of ARID5B(+):55bp before exon 6	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.502+21040_c.847-56del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	95613	NA	0	17	10	17
P-0020777-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63842573	63845586	Intron of ARID5B(+):3Kb before exon 9	Exon 9 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.1200-2888_c.1325del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3013	NA	0	14	10	14
P-0020909-T01-IM6	SOMATIC	PPP2R1A	FRMD4A	19	10	52719936	14320979	Intron of PPP2R1A(+):20bp after exon 9	Intron of FRMD4A(-):51Kb after exon 2	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) - FRMD4A (NM_018027) rearrangement: t(10;19)(p13;q13.41)(chr10:g.14320979::chr19:g.52719936)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PPP2R1A:FRMD4A}	0	NA	0	107	10	104
P-0020910-T01-IM6	SOMATIC	ATM	ATM	11	11	108121812	108192229	Intron of ATM(+):13bp after exon 10	Intron of ATM(+):82bp after exon 45	GRCh37	DELETION	ATM (NM_000051) rearrangement:  c.1607+13_c.6572+82del	PRECISE		MANUAL_OK	3to5	Deletion of 35 exons : in frame	70417	NA	0	16	10	20
P-0020901-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55180410	55222326	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):481bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-29569_c.889+481del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41916	NA	0	8	0	8
P-0020901-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268338	55270436	Intron of EGFR(+):232bp after exon 24	Intron of EGFR(+):118bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+232_c.3271+118del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2098	NA	0	65	10	466
P-0020973-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148465400	148513844	Intron of CUL1(+):559bp after exon 9	Exon 12 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: g.148465400_c.1437del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	48444	NA	0	6	10	6
P-0020974-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611184	61663337	Intron of RET(+):847bp before exon 12	Intron of CCDC6(-):3Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exon 12): c.303+2543:CCDC6_c.2137-848:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18052153	NA	0	20	10	32
P-0020612-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21970084	21971170	Intron of CDKN2Ap14ARF(-):816bp after exon 2	Exon 2 of CDKN2Ap14ARF(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.*101+817_c.231del	PRECISE		MANUAL_OK	3to5	-	1086	NA	NA	11	10	NA
P-0020612-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21970084	21971170	Intron of CDKN2Ap16INK4A(-):816bp after exon 2	Exon 2 of CDKN2Ap16INK4A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement:  c.457+817_c.188del	PRECISE		MANUAL_OK	3to5	-	1086	NA	NA	11	10	NA
P-0020964-T01-IM6	SOMATIC	SLCO2B1	MSH3	11	5	74883584	80149840	Exon 7 of SLCO2B1(+)	Intron of MSH3(+):108bp before exon 21	GRCh37	TRANSLOCATION	SLCO2B1 (NM_007256) - MSH3 (NM_002439) rearrangement: t(5;11)(q14.1;q13.4)(chr5:g.80149840::chr11:g.74883584)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SLCO2B1:MSH3}	0	NA	0	8	10	8
P-0020921-T01-IM6	SOMATIC	ZFHX3	GACAT1	16	2	72830674	108290321	Exon 9 of ZFHX3(-)	IGR: 80Kb before GACAT1(+)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(2,16)(q12.3,q22.3)(chr2:g.108290321::chr16:g.72830674)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	31	10	32
P-0020921-T01-IM6	SOMATIC	CREBBP	HRH1	16	3	3823697	11290802	Intron of CREBBP(-):54bp after exon 13	5-UTR of HRH1(+):10Kb before coding start	GRCh37	TRANSLOCATION	CREBBP (NM_004380) - HRH1 (NM_001098212) rearrangement: t(3,16)(p25.3,p13.3)(HRH1:NM_001098212::chr16:g.3823697)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	12	10	12
P-0020921-T01-IM6	SOMATIC	CDH7	ERCC4	18	16	63471128	14029511	Intron of CDH7(+):6Kb before exon 3	Exon 8 of ERCC4(+)	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) rearrangement: t(16,18)(p13.12,q22.1)(chr16:g.14029511::chr18:g.63471128)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	14	10	15
P-0020921-T01-IM6	SOMATIC	PRKCI	LOC100507391	3	3	170002353	194512767	Exon 12 of PRKCI(+)	IGR: 84Kb before LOC100507391(+)	GRCh37	DELETION	PRKCI (NM_002740) rearrangement:c.1172:PRKCI_g.194512767del	PRECISE		MANUAL_OK	3to5	-	24510414	NA	0	3	10	8
P-0020921-T01-IM6	SOMATIC	KCNV1	SOX2	8	3	110919480	181432581	IGR: 60Kb before KCNV1(-)	Promoter of SOX2(+):3Kb from tx start	GRCh37	TRANSLOCATION	SOX2 (NM_003106) - KCNV1 (NM_014379) rearrangement: t(3,8)(q26.33, q23.2)(chr3:g.181432581::chr8:g.110919480)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	26
P-0020919-T01-IM6	SOMATIC	PIK3C2G	AEBP2	12	12	18534757	19682908	Exon 13 of PIK3C2G(+)	IGR: 89Kb before AEBP2(+)	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1815:PIK3C2G_g.19682908:AEBP2del	PRECISE		MANUAL_OK	3to5	-	1148151	NA	0	2	10	2
P-0020926-T01-IM6	SOMATIC	ERBB2	LINC00052	17	15	37882881	88160146	Exon 24 of ERBB2(+)	IGR: 40Kb before LINC00052(+)	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(15,17)(q25.3,q12)(chr15:g.88160146::chr17:g.37882881)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	10	37
P-0020926-T01-IM6	SOMATIC	RAMP3	CDC73	7	1	45238072	193218905	IGR: 41Kb before RAMP3(+)	Exon 16 of CDC73(+)	GRCh37	TRANSLOCATION	CDC73 (NM_024529) - RAMP3 (NM_005856) rearrangement: t(1,7)(q31.2,p13)(chr1:g.193218905::chr7:g.45238072)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	11
P-0017478-T02-IM6	SOMATIC	DDR2	DDR2	1	1	162729024	162749790	Intron of DDR2(+):561bp before exon 8	Intron of DDR2(+):111bp before exon 18	GRCh37	INVERSION	DDR2 (NM_006182) rearrangement: c.672-562_c.2434-112inv	PRECISE		MANUAL_OK	5to5	-	20766	NA	0	3	5	3
P-0020951-T01-IM6	SOMATIC	TBX4	BRIP1	17	17	59588702	59761387	IGR: 55Kb before TBX4(+)	Exon 20 of BRIP1(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: g.59588702_c.3020inv	PRECISE		MANUAL_OK	3to3	-	172685	NA	0	103	10	99
P-0021035-T01-IM6	SOMATIC	CTCF	CTCF	16	16	67635426	67645957	5-UTR of CTCF(+):9Kb before coding start	Exon 4 of CTCF(+)	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.-9-9301_c.885dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10531	NA	0	8	10	9
P-0020920-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37627473	37629317	Exon 2 of CDK12(+)	Intron of CDK12(+):1Kb after exon 2	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.1388_c.1931+1301del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1844	NA	0	5	10	5
P-0020920-T01-IM6	SOMATIC	CIC	CIC	19	19	42797875	42799088	Exon 16 of CIC(+)	Exon 20 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement:  c.3927_c.4572inv	IMPPRECISE		MANUAL_OK	5to5	-	1213	NA	0	7	0	7
P-0020920-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30670962	30673478	Exon 12 of MDC1(-)	Exon 10 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.5784_c.3482inv	PRECISE		MANUAL_OK	3to3	-	2516	NA	0	2	10	2
P-0021038-T01-IM6	SOMATIC	KIF5B	EGFR	10	7	32312089	55241486	Intron of KIF5B(-):125bp before exon 16	Intron of EGFR(+):127bp before exon 18	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - EGFR (NM_005228) rearrangement: t(7;10)(p11.2;q11.22)(chr7:g.55241486::chr10:g.32312089)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:EGFR}	0	NA	0	9	10	12
P-0021054-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647162	149783021	Intron of ROS1(-):224bp after exon 33	Intron of CD74(-):146bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783021::chr6:g.117647162)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	94	10	102
P-0021039-T01-IM6	SOMATIC	KMT2D	SOBP	12	6	49431649	107938913	Exon 34 of KMT2D(-)	Intron of SOBP(+):16Kb before exon 6	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - SOBP (NM_018013) rearrangement: t(6;12)(q21;q13.12)(chr6:g.55241486::chr12:g.32312089)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:SOBP}	0	NA	0	9	10	13
P-0021039-T01-IM6	SOMATIC	ZNF451	ARID1B	6	6	56998504	157099755	Intron of ZNF451(+):514bp after exon 6	Exon 1 of ARID1B(+)	GRCh37	DELETION	ZNF451 (NM_001031623) - ARID1B (NM_020732) rearrangement: c.575+514_c.518del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZNF451:ARID1B}	100101251	NA	0	32	10	35
P-0020961-T01-IM6	SOMATIC	IL7R	LIFR	5	5	35876546	38575410	Exon 8 of IL7R(+)	5-UTR of LIFR(-):94Kb before coding start	GRCh37	INVERSION	IL7R (NM_002185) - LIFR (NM_002310) rearrangement: c.1338:IL7R_c.-20+19953:LIFRinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {IL7R:LIFR}	2698864	NA	0	29	10	27
P-0020958-T01-IM6	SOMATIC	MFAP3L	FAT1	4	4	170964958	187517025	IGR: 12Kb before MFAP3L(-)	Intron of FAT1(-):45bp before exon 26	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: g.170964958_c.13001-45inv	PRECISE		MANUAL_OK	3to3	-	16552067	NA	0	11	10	12
P-0021044-T01-IM6	SOMATIC	GPX5	TAP1	6	6	28495308	32821028	Intron of GPX5(+):1Kb after exon 1	Exon 1 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: g.28495308_c.566del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4325720	NA	0	39	10	40
P-0021045-T01-IM6	SOMATIC	SPATS2	SMARCD1	12	12	49820167	50480134	5-UTR of SPATS2(+):35Kb before coding start	Intron of SMARCD1(+):3bp after exon 2	GRCh37	DUPLICATION	SMARCD1 (NM_003076) - SPATS2 (NM_023071) rearrangement: c.365+3:SMARCD1_c.-243-34386:SPATS2dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {SMARCD1:SPATS2}	659967	NA	0	6	10	6
P-0007887-T02-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40087546	42869732	IGR: 23Kb before LINC00114(-)	Intron of TMPRSS2(-):313bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: g.40087546_c.126+314del	PRECISE		MANUAL_OK	3to5	-	2782186	NA	0	18	10	19
P-0020963-T01-IM6	SOMATIC	SDHA	AHRR	5	5	226144	347001	Exon 5 of SDHA(+)	Intron of AHRR(+):3Kb after exon 2	GRCh37	DELETION	SDHA (NM_004168) - AHRR (NM_001242412) rearrangement: c.603:SDHA_c.74+2922:AHRRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SDHA:AHRR}	120857	NA	0	13	10	13
P-0021034-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8460483	8877584	Exon 33 of PTPRD(-)	5-UTR of PTPRD(-):560Kb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.3803_c.-104+141113del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	417101	NA	0	9	10	9
P-0020988-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55180839	55222700	Intron of EGFR(+):29Kb before exon 2	Intron of EGFR(+):822bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-29140_c.890-823del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41861	NA	0	95	10	115
P-0004373-T02-IM5	SOMATIC	CCDC53	SH2B3	12	12	102400108	111856196	IGR: 7Kb before CCDC53(-)	Exon 2 of SH2B3(+)	GRCh37	INVERSION	SH2B3 (NM_005475) rearrangement : c.247_chr12:102400108inv	PRECISE		MANUAL_OK	3to3	-	9456088	NA	0	48	40	48
P-0004373-T02-IM5	SOMATIC	MKRN1	BRAF	7	7	140167332	140434466	Intron of MKRN1(-): 4Kb after exon 2	Exon 18 of BRAF(-)	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) rearrangement: c.314+4351:MKRN1_c.2232:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MKRN1-BRAF)	267134	NA	0	33	38	31
P-0020953-T01-IM6	SOMATIC	ZNF143	ATM	11	11	9510608	108100012	Intron of ZNF143(+):6Kb before exon 8	Exon 4 of ATM(+)	GRCh37	DUPLICATION	ATM (NM_000051) - ZNF143 (NM_003442) rearrangement: c.293:ATM_c.646-5585:ZNF143dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATM:ZNF143}	98589404	NA	0	22	10	26
P-0021116-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44835006	44910843	Intron of KDM6A(+):1Kb after exon 4	Intron of KDM6A(+):110bp before exon 9	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.384+1046_c.655-111del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	75837	NA	0	6	7	6
P-0021120-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117661041	117662417	Intron of ROS1(-):1Kb after exon 30	Exon 30 of ROS1(-)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5079+1257_c.4960del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1376	NA	0	42	10	45
P-0021078-T01-IM6	SOMATIC	MGA	TNFAIP8L3	15	15	42021538	51318549	Exon 11 of MGA(+)	IGR: 30Kb before TNFAIP8L3(-)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.3834:MGA_chr15:g.51318549inv	PRECISE		MANUAL_OK	5to5	-	9297011	NA	0	9	10	9
P-0021155-T01-IM6	SOMATIC	RB1	RB1	13	13	49051028	49051762	Intron of RB1(+):49bp after exon 25	Intron of RB1(+):222bp after exon 26	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2663+49_c.2713+222del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	734	NA	0	28	0	32
P-0021061-T01-IM6	SOMATIC	LINC01568	ANKRD11	16	16	73410859	89350768	IGR: 10Kb before LINC01568(+)	Exon 9 of ANKRD11(-)	GRCh37	INVERSION	ANKRD11 (NM_013275) rearrangement: chr16:g.73410859_c.2182:ANKRD11inv	IMPPRECISE		MANUAL_OK	5to5	-	15939909	NA	0	71	0	104
P-0021150-T01-IM6	SOMATIC	KIF5B	RET	10	10	32317044	43611591	Intron of KIF5B(-):311bp after exon 15	Intron of RET(+):440bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+312:KIF5B_c.2137-441:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294547	NA	0	23	10	25
P-0021028-T01-IM6	SOMATIC	ZNF77	GNA11	19	19	2925382	3110145	IGR: 8Kb before ZNF77(-)	Intron of GNA11(+):1bp before exon 2	GRCh37	DELETION	GNA11 (NM_002067) rearrangement: chr19:g.2925382_c.137-2del	PRECISE		MANUAL_OK	3to5	-	184763	NA	0	28	10	30
P-0021028-T01-IM6	SOMATIC	NOTCH3	AKAP8	19	19	15272592	15454199	Intron of NOTCH3(-):67bp before exon 33	IGR: 10Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.5914-67_chr19:g.15454199del	PRECISE		MANUAL_OK	3to5	-	181607	NA	0	9	10	9
P-0021233-T01-IM6	SOMATIC	ST6GAL2	IRS1	2	2	107724645	227661583	IGR: 295Kb before ST6GAL2(-)	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) rearrangement: g.107724645_c.1872inv	PRECISE		MANUAL_OK	5to5	-	119936938	NA	0	17	10	20
P-0020953-T02-IM6	SOMATIC	ZNF143	ATM	11	11	9510608	108100012	Intron of ZNF143(+):6Kb before exon 8	Exon 4 of ATM(+)	GRCh37	DUPLICATION	ATM (NM_000051) - ZNF143 (NM_003442) rearrangement: c.293:ATM_c.646-5585:ZNF143dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATM:ZNF143}	98589404	NA	2	64	10	67
P-0021235-T01-IM6	SOMATIC	HMGCS2	NOTCH2	1	1	120292852	120479947	3-UTR of HMGCS2(-):572bp after coding stop	Exon 21 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: g.120292852_c.3480inv	PRECISE		MANUAL_OK	5to5	-	187095	NA	0	6	10	10
P-0021239-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880684	42873552	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-3436:TMPRSS2_c.40-63140:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992868	NA	0	29	10	29
P-0021239-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874086	151877934	Exon 38 of KMT2C(-)	Exon 36 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.8452_c.7011del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3848	NA	0	9	10	10
P-0021230-T01-IM6	SOMATIC	ATM	ATM	11	11	108119757	108203512	Exon 9 of ATM(+)	Exon 53 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.1163_c.7812del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	83755	NA	0	25	10	26
P-0021228-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646295	149783729	Intron of ROS1(-):717bp before exon 34	Intron of CD74(-):513bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43):t(5;6)(q32;q22.1)(chr5:g.149783729::chr6:g.117646295)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	21	10	21
P-0017882-T02-IM6	SOMATIC	MAPK4	PARK2	18	6	48058391	162170030	IGR: 28Kb before MAPK4(+)	Intron of PARK2(-):37Kb after exon 7	GRCh37	TRANSLOCATION	PARK2 (NM_004562) rearrangement: t(6;18)(q26;q21.1)(chr6:g.162170030::chr18:g.48058391)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	16
P-0017882-T02-IM6	SOMATIC	TMPRSS2	CHD3	21	17	42870483	7790479	Intron of TMPRSS2(-):367bp before exon 2	Intron of CHD3(+):2Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(p13.1;q22.3)(chr17:g.7790479::chr21:g.42870483)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	84	10	87
P-0017882-T02-IM6	SOMATIC	HDAC9	XPO1	7	2	18926552	61721253	Intron of HDAC9(+):12Kb after exon 21	Intron of XPO1(-):27bp before exon 12	GRCh37	TRANSLOCATION	HDAC9 (NM_178425) - XPO1 (NM_003400) rearrangement: t(2;7)(p15;p21.1)(chr2:g.61721253::chr7:g.18926552)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HDAC9:XPO1}	0	NA	0	106	10	105
P-0021253-T01-IM6	SOMATIC	FLT1	DIAPH3	13	13	29004283	59883399	Exon 8 of FLT1(-)	IGR: 356Kb before DIAPH3(-)	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.1010_chr13:g.59883399del	PRECISE		MANUAL_OK	3to5	-	30879116	NA	0	8	10	8
P-0021254-T01-IM6	SOMATIC	TMPRSS2	PRDM15	21	21	42873072	43199377	Intron of TMPRSS2(-):3Kb before exon 2	IGR: 19Kb before PRDM15(-)	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2956_chr21:g.43199377inv	PRECISE		MANUAL_OK	3to3	-	326305	NA	0	10	10	9
P-0021254-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42874388	14016215	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ETV1(-):836bp after exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion (TMPRSS2 exons 1 fused to ETV1 exons 6-12):  t(7;21)(p21.2;q22.3)(chr7:g.14016215::chr21:g.42874388)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV1}	0	NA	0	24	10	27
P-0021255-T01-IM6	SOMATIC	PELI2	FLT3	14	13	56582755	28608118	Promoter of PELI2(+):2Kb from tx start	Exon 15 of FLT3(-)	GRCh37	TRANSLOCATION	PELI2 (NM_021255) FLT3 (NM_004119) rearrangement: t(13,14)(q12.2,q22.3)(chr13:g.28608118::chr14:g.56582755)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PELI2:FLT3}	0	NA	0	24	10	23
P-0021001-T01-IM6	SOMATIC	PTPRD	CDKN2B-AS1	9	9	8507537	22097196	Intron of PTPRD(-):103bp before exon 22	5-UTR of CDKN2B-AS1(+):24Kb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.1544-103_g.22097196	PRECISE		MANUAL_OK	3to5	-	13589659	NA	0	9	10	9
P-0020812-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884157	42876239	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.55+3638:TMPRSS2_c.39+63429:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992082	NA	0	43	10	46
P-0012104-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39951033	42869623	3-UTR of ERG(-):83Kb after coding stop	Intron of TMPRSS2(-):422bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-11): c.126+424:TMRPSS2_c.-47-3362:ERGdel	PRECISE		MANUAL_OK	3to5	-	2918590	NA	0	55	10	59
P-0019401-T02-IM6	SOMATIC	FAM198A	MTOR	3	1	43055777	11217066	Intron of FAM198A(+):18Kb before exon 2	Intron of MTOR(-):142bp after exon 30	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;3)(p36.22;p22.1)(chr1:g.11217066::chr3:g.43055777)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	19	10	19
P-0021434-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980910	201982121	Intron of ELF3(+):174bp before exon 3	Exon 6 of ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.164-175_c.645del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1211	NA	0	6	0	6
P-0021434-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176715253	176715834	Intron of NSD1(+):566bp before exon 21	Exon 21 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.6152-567_c.6166del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	581	NA	0	53	0	62
P-0021282-T01-IM6	SOMATIC	TMPRSS2	PLCD3	21	17	42843839	43207457	Exon 10 of TMPRSS2(-)	Intron of PLCD3(-):2Kb after exon 1	GRCh37	TRANSLOCATION	PLCD3 (NM_133373) - TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.43207457::chr21:g.42843839)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PLCD3:TMPRSS2}	0	NA	0	10	10	10
P-0021170-T02-IM6	SOMATIC	TPM3	NTRK1	1	1	154142641	156845218	Intron of TPM3(-):234bp after exon 8	Intron of NTRK1(+):93bp before exon 12	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3 exons 1-8 fused to NTRK1 exons 12-17): c.775+235:TPM3_c.1355-94:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2702577	NA	0	25	10	37
P-0019393-T02-IM6	SOMATIC	SMARCA4	LDLR	19	19	11136953	11177147	Intron of SMARCA4(+):22bp before exon 23	IGR: 23Kb before LDLR(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3169-23_chr19:g.11177147del	PRECISE		MANUAL_OK	3to5	-	40194	NA	0	12	10	12
P-0021183-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39844672	42869387	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):658bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+659:TMPRSS2_c.18+25615:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3024715	NA	0	3	8	3
P-0021290-T01-IM6	SOMATIC	HLA-DOB	TAP2	6	6	32764970	32802920	IGR: 16Kb before HLA-DOB(-)	Intron of TAP2(-):10bp after exon 5	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: g.32764970_c.945+11inv	IMPPRECISE		MANUAL_OK	5to5	-	37950	NA	0	22	0	29
P-0019502-T02-IM6	SOMATIC	KMT2B	PSENEN	19	19	36213615	36237169	Exon 5 of KMT2B(+)	Intron of PSENEN(+):150bp before exon 3	GRCh37	DUPLICATION	PSENEN (NM_172341) - KMT2B (NM_014727) rearrangement: c.62-151:PSENEN_c.2717:KMT2Bdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PSENEN:KMT2B}	23554	NA	0	26	0	26
P-0021328-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148497861	148512173	3-UTR of CUL1(+):71Kb after coding stop	Intron of EZH2(-):42bp before exon 14	GRCh37	INVERSION	EZH2 (NM_004456) rearrangemen: chr7:g.148497861_c.1547-42:EZH2inv	IMPPRECISE		MANUAL_OK	3to3	-	14312	NA	0	42	0	39
P-0021104-T01-IM6	SOMATIC	ATP1B2	TP53	17	17	7562760	7576880	Promoter of ATP1B2(+):9Kb from tx start	Exon 9 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: g.7562760_c.966del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	14120	NA	0	21	10	23
P-0021104-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872989	42866560	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):55bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.127-55:TMPRSS2_c.40-55445:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2993571	NA	0	30	10	30
P-0021288-T01-IM6	SOMATIC	SLC12A7	TERT	5	5	1096212	1295119	Intron of SLC12A7(-):2Kb before exon 2	5-UTR of TERT(-):41Kb before coding start	GRCh37	DUPLICATION	SLC12A7 (NM_006598) - TERT (NM_198253) rearrangement: c.125-1849:SLC12A7_c.-15:TERTdup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {SLC12A7:TERT}	198907	NA	0	27	10	30
P-0021166-T01-IM6	SOMATIC	RB1	RB1	13	13	49037433	49039269	Intron of RB1(+):433bp before exon 21	Intron of RB1(+):22bp after exon 22	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2107-434_c.2325+22del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1836	NA	0	94	10	96
P-0021201-T01-IM6	SOMATIC	ATM	C11orf87	11	11	108155126	109110999	Exon 26 of ATM(+)	IGR: 182Kb before C11orf87(+)	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.3919:ATM_chr11:g.109110999inv	PRECISE		MANUAL_OK	3to3	-	955873	NA	0	4	10	3
P-0021383-T01-IM6	SOMATIC	BRD4	CRLF1	19	19	15366434	18707393	Intron of BRD4(-):31bp before exon 10	Intron of CRLF1(-):38bp after exon 6	GRCh37	DELETION	CRLF1 (NM_004750) - BRD4 (NM_058243) rearrangement: c.1024+39_c.1752-31del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CRLF1:BRD4}	3340959	NA	0	19	10	19
P-0021105-T01-IM6	SOMATIC	NKAIN1	CDKN2C	1	1	31666206	51439485	Intron of NKAIN1(-):5Kb before exon 2	Intron of CDKN2C(+):79bp before exon 2	GRCh37	INVERSION	NKAIN1 (NM_024522) - CDKN2C (NM_078626) rearrangement: c.55-5172:NKAIN1_c.130-80:CDKN2Cinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {NKAIN1:CDKN2C}	19773279	NA	0	2	10	2
P-0021105-T01-IM6	SOMATIC	SLC38A7	CSF3R	16	1	58687670	36937176	IGR: 13Kb before SLC38A7(-)	Exon 10 of CSF3R(-)	GRCh37	TRANSLOCATION	CSF3R (NM_000760) rearrangement: t(1;16)(p34.4;q21)(chr1:g.36937176::chr16:g.58687670)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	8
P-0021189-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683595	32415911	Intron of EWSR1(+):472bp after exon 8	Intron of WT1(-):2Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32415911::chr22:g.29683595)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	73	0	77
P-0021388-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39929648	42866534	Intron of ERG(-):18Kb after exon 3	Intron of TMPRSS2(-):29bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.127-29:TMPRSS2_c.39+17938:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2936886	NA	0	10	10	10
P-0021271-T01-IM6	SOMATIC	LINC01573	EGFL7	9	9	139473248	139562957	IGR: 31Kb before LINC01573(+)	Intron of EGFL7(+):51bp before exon 3	GRCh37	DELETION	EGFL7 (NM_201446) rearrangement: g.139473248_c.81-52del	PRECISE		MANUAL_OK	3to5	-	89709	NA	0	35	10	36
P-0021435-T01-IM6	SOMATIC	KMT2B	PPP1R10	19	6	36213821	30582643	Intron of KMT2B(+):75bp before exon 6	3-UTR of PPP1R10(-):2Kb after coding stop	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(6;19)(p21.33;q13.12)(chr6:g.30582643::chr19:g.36213821)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	9
P-0021102-T01-IM6	SOMATIC	SCARA3	ARID1B	8	6	27481234	157528010	IGR: 10Kb before SCARA3(+)	Exon 20 of ARID1B(+)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(6;8)(q25.3;p21.1)(chr6:g.157528010::chr8:g.27481234)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0021286-T01-IM6	SOMATIC	ROS1	LOC151121	6	2	117649989	129867086	Intron of ROS1(-):502bp after exon 32	IGR: 133Kb before LOC151121(-)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(2;6)(q14.3;q22.1)(chr2:g.129867086::chr6:g.117649989)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	17
P-0021274-T01-IM6	SOMATIC	ARAF	ZNF81	X	X	47422327	47730867	5-UTR of ARAF(+):39bp before coding start	Intron of ZNF81(+):17Kb before exon 3	GRCh37	DUPLICATION	ZNF81 (NM_007137) - ARAF (NM_001654) rearrangement: c.55-16531:ZNF81_c.-40:ARAFdup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {ZNF81:ARAF}	308540	NA	0	8	10	8
P-0021173-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52692916	52693603	Promoter of PPP2R1A(+):138bp from tx start	Intron of PPP2R1A(+):176bp after exon 1	GRCh37	DUPLICATION	PPP2R1A (NM_014225) rearrangement: c.-434_c.78+176dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	687	NA	0	6	10	6
P-0021173-T01-IM6	SOMATIC	PPP2R1A	U2AF2	19	19	52693375	56185948	Exon 1 of PPP2R1A(+)	3-UTR of U2AF2(+):19Kb after coding stop	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.26:PPP2R1A_chr19:g.56185948inv	PRECISE		MANUAL_OK	5to5	-	3492573	NA	0	24	10	25
P-0021351-T01-IM6	SOMATIC	KDM5A	LINC00293	12	8	495087	47164681	Exon 2 of KDM5A(-)	IGR: 588Kb before LINC00293(+)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(8;12)(q11.1;p13.33)(chr8:g.47164681::chr12:g.495087)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	25
P-0021168-T01-IM6	SOMATIC	LINC00581	TAP2	6	6	21376128	32805930	IGR: 110Kb before LINC00581(-)	Exon 2 of TAP2(-)	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: chr6:g.21376128_c.81:TAP2inv	PRECISE		MANUAL_OK	5to5	-	11429802	NA	0	50	10	68
P-0009955-T02-IM6	SOMATIC	NF2	NF2	22	22	30033141	30035116	Intron of NF2(+):276bp after exon 2	Exon 3 of NF2(+)	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.240+276_c.278del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1975	NA	0	103	10	111
P-0021262-T01-IM6	SOMATIC	NTRK1	F11R	1	1	156844288	160970239	Intron of NTRK1(+):74bp before exon 10	Intron of F11R(-):101bp before exon 5	GRCh37	INVERSION	F11R (NM_016946) - NTRK1 (NM_002529) rearrangement: c.389-101:F11R_c.1196-75:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {F11R:NTRK1}	4125951	NA	0	50	10	62
P-0021355-T01-IM6	SOMATIC	ATM	ATM	11	11	108176314	108192120	Intron of ATM(+):735bp after exon 37	Exon 45 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.5674+735_c.6545del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15806	NA	0	12	10	12
P-0021357-T01-IM6	SOMATIC	EWSR1	CREB1	22	2	29684612	208439916	Exon 9 of EWSR1(+)	Intron of CREB1(+):79bp before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB1 (NM_052854) fusion (EWSR1 exons 1-9 fused with CREB1 exons 7-9): t(2,22)(q33.3;q12.2)(chr2:g.208439916::chr22:g.29684612)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB1}	0	NA	0	31	10	31
P-0021390-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27086254	27087375	Intron of ARID1A(+):1Kb before exon 5	Exon 5 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1921-1093_c.1949del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1121	NA	0	129	10	151
P-0021390-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21974795	21975798	Exon 1 of CDKN2A(-)	5-UTR of CDKN2Ap16INK4A(-): 972bp before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.32_c.-972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1003	NA	0	59	10	63
P-0021469-T01-IM6	SOMATIC	BRAF	TRIM33	7	1	140481644	114963985	Intron of BRAF(-):151bp before exon 11	Intron of TRIM33(-):72bp after exon 11	GRCh37	TRANSLOCATION	TRIM33 (NM_015906) - BRAF(NM_004333) rearrangement: t(1;7)(p13.2;q34)(chr1:g.114963985::chr7:g.140481644)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRIM33:BRAF}	0	NA	0	60	10	69
P-0021478-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123194839	123199667	Intron of STAG2(+):234bp before exon 16	Intron of STAG2(+):58bp before exon 21	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1417-235_c.2026-59del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	4828	NA	0	21	10	22
P-0014551-T01-IM6	SOMATIC	EWSR1	DDIT3	22	12	29684023	57913073	Intron of EWSR1(+): 572bp before exon 7	5-UTR of DDIT3(-): 2Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - DDIT3 (NM_001195054) Fusion (EWSR1 exons 1-8 with DDIT3 exons 2-4) : t(12,22)(q14.1,q12.2)(chr12:g.57913073::chr22:g.29684023)	PRECISE		MANUAL_OK	3to3	Transcript fusion (EWSR1-DDIT3)	0	NA	0	7	5	6
P-0014551-T01-IM6	SOMATIC	MN1	EWSR1	22	22	28201228	29683683	IGR: 4Kb after MN1(-)	Intron of EWSR1(+): 560bp after exon 6	GRCh37	INVERSION	EWSR1 (NM_013986) Rearrangement : c.625+560:EWSR1_chr22:28201228inv	PRECISE		MANUAL_OK	5to5	-	1482455	NA	0	72	94	70
P-0020008-T02-IM6	SOMATIC	FANCA	SHANK2	16	11	89874616	70388851	Intron of FANCA(-):85bp after exon 6	Intron of SHANK2(-):40Kb before exon 3	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(11,16)(q13.3,q24.3)(chr11:g.70388851::chr16:g.89874616)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FANCA:SHANK2}	0	NA	0	14	10	15
P-0020008-T02-IM6	SOMATIC	KEAP1	ZNF85	19	19	10610082	21086726	Exon 2 of KEAP1(-)	IGR: 19Kb before ZNF85(+)	GRCh37	INVERSION	KEAP1 (NM_203500) rearrangement: c.628_chr19:g.21086726inv.	PRECISE		MANUAL_OK	5to5	-	10476644	NA	0	10	10	20
P-0021358-T01-IM6	SOMATIC	SENP3-EIF4A1	TP53	17	17	7482501	7579777	Promoter of SENP3-EIF4A1(+):17Kb from tx start	Intron of TP53(-):56bp before exon 3	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: chr17:g.7482501_c.75-56:TP53inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {SENP3-EIF4A1:TP53}	97276	NA	0	16	10	16
P-0021360-T01-IM6	SOMATIC	SLC22A15	IKBKE	1	1	116592315	206666677	Intron of SLC22A15(+):12Kb after exon 8	Exon 20 of IKBKE(+)	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement: chr1:g.116592315_c.2011:IKBKEinv	PRECISE		MANUAL_OK	5to5	-	90074362	NA	0	27	10	41
P-0021482-T01-IM6	SOMATIC	CDKN1B	RAPGEF2	12	4	12870987	161050010	Exon 1 of CDKN1B(+)	IGR: 861Kb before RAPGEF2(+)	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(4;12)(q32.1;p13.1)(chr4:g.161050010::chr12:g.12870987)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	36
P-0021391-T01-IM6	SOMATIC	ATAD1	PTEN	10	10	89539234	89653757	Intron of ATAD1(-):3Kb before exon 6	Intron of PTEN(+):24bp before exon 2	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-25_chr10:g.89539234del	PRECISE		MANUAL_OK	3to5	-	114523	NA	0	29	10	29
P-0021363-T01-IM6	SOMATIC	MED1	WHSC1L1	17	8	37599287	38148034	Intron of MED1(-):515bp after exon 3	Exon 17 of WHSC1L1(-)	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) - MED1 (NM_004774) rearrangement: t(8;17)(p11.23;q12)(chr8:g.38148034::chr17:g.37599287)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {WHSC1L1:MED1}	0	NA	0	193	0	251
P-0021454-T01-IM6	SOMATIC	JAK2	JAK2	9	9	4932510	5081770	IGR: 53Kb before JAK2(+)	Exon 19 of JAK2(+)	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: chr9:g.4932510_c.2480del	PRECISE		MANUAL_OK	3to5	-	149260	NA	0	32	10	33
P-0021458-T01-IM6	SOMATIC	ABCC1	BRAF	16	7	16116105	140493152	Intron of ABCC1(+):6Kb after exon 5	Intron of BRAF(-):955bp after exon 8	GRCh37	TRANSLOCATION	ABCC1 (NM_004996) - BRAF (NM_004333) rearrangement: t(7,16)(q34,p13.11)(chr7:g.140493152::chr16:g.16116105)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ABCC1:BRAF}	0	NA	0	36	10	36
P-0021458-T01-IM6	SOMATIC	POMC	DNMT3A	2	2	25419699	25457171	IGR: 36Kb before POMC(-)	Exon 23 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: chr2:g.25419699_c.2716del	PRECISE		MANUAL_OK	3to5	-	37472	NA	0	33	10	34
P-0021467-T01-IM6	SOMATIC	TPM3	NTRK1	1	1	154139761	156844038	Intron of TPM3(-):3Kb after exon 6	Intron of NTRK1(+):136bp before exon 9	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3 exons 1-6 fused in-frame to NTRK1 exons 9-17): c.*652:TPM3_c.1178-137:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2704277	NA	0	27	10	32
P-0021409-T01-IM6	SOMATIC	COLGALT1	KDM5A	19	12	17669210	416253	Intron of COLGALT1(+):909bp before exon 2	Exon 24 of KDM5A(-)	GRCh37	TRANSLOCATION	COLGALT1 (NM_024656) - KDM5A (NM_001042603) rearrangement: t(19;12)(p13.11;p13.33)(chr19:g.17669210::chr12:g.416253)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {COLGALT1:KDM5A}	0	NA	0	33	10	38
P-0021314-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	149435126	149437070	Intron of CSF1R(-):227bp before exon 20	Exon 16 of CSF1R(-)	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.2555-227_c.2218del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1944	NA	0	52	10	57
P-0021471-T01-IM6	SOMATIC	AATK-AS1	CREBBP	17	16	79143420	3788736	5-UTR of AATK-AS1(+):14Kb before coding start	Intron of CREBBP(-):63bp before exon 26	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(16;17)(p13.3;q25.3)(chr16:g.3788736::chr17:g.79143420)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {AATK-AS1:CREBBP}	0	NA	0	12	10	12
P-0021495-T01-IM6	SOMATIC	ALK	EML4	2	2	29448313	42494226	Intron of ALK(-):13bp after exon 19	Intron of EML4(+):2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.493+2355:EML4_c.3172+14:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13045913	NA	0	26	10	24
P-0021503-T01-IM6	SOMATIC	LINC01309	ATR	13	3	104696707	142188327	IGR: 619Kb before LINC01309(+)	Exon 38 of ATR(-)	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;13)(q23;q33.1)(chr3:g.142188327::chr13:g.104696707)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	41
P-0021503-T01-IM6	SOMATIC	TMPRSS2	CAP2	21	6	42878352	17413047	Intron of TMPRSS2(-):2Kb after exon 1	5-UTR of CAP2(+):9Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangment: t(6;21)(p22.3;q22.3)(chr6:g.17413047::chr21:g.42878352)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	65	10	69
P-0021580-T01-IM6	SOMATIC	MEN1	MEN1	11	11	64574597	64576030	Intron of MEN1(-):27bp before exon 6	Intron of MEN1(-):459bp before exon 3	GRCh37	DELETION	MEN1 (NM_000244) rearrangement: c.840-27_c.461-459del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1433	NA	0	33	10	35
P-0021601-T01-IM6	SOMATIC	DNAJB1	TECR	19	19	14628401	14674443	Intron of DNAJB1(-):543bp before exon 2	Intron of TECR(+):26bp before exon 4	GRCh37	INVERSION	TECR (NM_138501) - DNAJB1 (NM_006145) rearrangement: c.119-27:TECR_c.212-543:DNAJB1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TECR:DNAJB1}	46042	NA	0	12	10	12
P-0021588-T01-IM6	SOMATIC	PIM1	PIM1	6	6	37134622	37140647	IGR: 3Kb before PIM1(+)	Intron of PIM1(+):124bp before exon 5	GRCh37	DELETION	PIM1 (NM_002648) rearrangement: g.37134622_c.608-125del	PRECISE		MANUAL_OK	3to5	-	6025	NA	0	6	10	6
P-0021669-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55172288	55221969	Intron of EGFR(+):38Kb before exon 2	Intron of EGFR(+):124bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-37691_c.889+124del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	49681	NA	0	58	10	61
P-0021629-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29687948	51201619	Intron of EWSR1(+):177bp before exon 11	Intron of ATF1(+):2Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-10 fused in frame with ATF1 exons 4-7): t(12;22)(q13.12;q12.2)(chr12:g.51201619::chr22:g.29687948)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:ATF1}	0	NA	0	53	10	56
P-0021541-T01-IM6	SOMATIC	TANC2	CREBBP	17	16	61485310	3817750	Intron of TANC2(+):2Kb after exon 19	Exon 16 of CREBBP(-)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(16,17)(p13.3,q23.3)(chr16:g.3817750::chr17:g.61485310)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	56	10	56
P-0021541-T01-IM6	SOMATIC	TRAF2	UAP1L1	9	9	139804386	139972713	Exon 6 of TRAF2(+)	Intron of UAP1L1(+):7bp after exon 2	GRCh37	DUPLICATION	UAP1L1 (NM_207309) - TRAF2 (NM_021138) rearrangement: c.494+7:UAP1L1_c.543:TRAF2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {UAP1L1:TRAF2}	168327	NA	0	5	6	5
P-0021573-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27021676	27023822	Promoter of ARID1A(+):845bp from tx start	Exon 1 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: g.27021676_c.928del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2146	NA	0	5	10	5
P-0021573-T01-IM6	SOMATIC	PLEKHA2	CDK6	8	7	38736050	92392894	IGR: 23Kb before PLEKHA2(+)	Intron of CDK6(-):11Kb after exon 3	GRCh37	TRANSLOCATION	CDK6 (NM_001145306) rearrangement: t(7;8)(q21.2;p11.22)(chr7:g.92392894::chr8:g.38736050)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	7
P-0021663-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123241732	123353510	Intron of FGFR2(-):1Kb after exon 17	5-UTR of FGFR2(-):114Kb before coding start	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.-150-29_c.2301+1480del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	111778	NA	0	42	10	45
P-0021544-T01-IM6	SOMATIC	ERBB3	KYNU	12	2	56478882	143100944	Exon 3 of ERBB3(+)	IGR: 534Kb before KYNU(+)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(2,12)(q22.2,q13.2)(chr12:g.56478882::chr2:g.143100944)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	112	10	113
P-0021626-T01-IM6	SOMATIC	PTPRD	GRM8	9	7	8338994	126480752	Exon 43 of PTPRD(-)	Intron of GRM8(-):62Kb after exon 5	GRCh37	TRANSLOCATION	GRM8 (NM_000845) - PTPRD (NM_002839) rearrangement: t(7;9)(q31.33;p24.1)(chr7:g.126480752::chr9:g.8338994)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GRM8:PTPRD}	0	NA	0	29	10	30
P-0021647-T01-IM6	SOMATIC	EWSR1	RBFOX2	22	22	29687876	36412008	Intron of EWSR1(+):249bp before exon 11	Intron of RBFOX2(-):12Kb after exon 1	GRCh37	INVERSION	RBFOX2 (NM_001082578) - EWSR1 (NM_013986) rearrangement: c.186+12280:RBFOX2_c.1028-250:EWSR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RBFOX2:EWSR1}	6724132	NA	0	45	10	64
P-0021630-T01-IM6	SOMATIC	SMAD3	MTHFS	15	15	67479883	80014264	Intron of SMAD3(+):36bp after exon 8	IGR: 122Kb before MTHFS(-)	GRCh37	INVERSION	SMAD3 (NM_005902) rearrangement: c.1154+36:SMAD3_chr15:g.80014264inv	PRECISE		MANUAL_OK	3to3	-	12534381	NA	0	13	10	12
P-0021528-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37882918	37885835	Intron of ERBB2(+):6bp after exon 24	Promoter of ERBB2(+):30Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.2970+6_c.*1538del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2917	NA	0	32	10	32
P-0021545-T01-IM6	SOMATIC	LATS2	LOC101927915	13	8	21563052	138499240	Exon 4 of LATS2(-)	IGR: 81Kb before LOC101927915(-)	GRCh37	TRANSLOCATION	LATS2 (NM_014572) rearrangement: t(8,13)(q24.23,q12.11)(chr8:g.138499240::chr13:g.21563052)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	10
P-0021578-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316137	43610809	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):625bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1231:KIF5B_c.2136+624:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294672	NA	0	107	10	153
P-0021549-T01-IM6	SOMATIC	TBC1D10C	RPS6KB2	11	11	67176716	67196548	Intron of TBC1D10C(+):112bp after exon 9	Intron of RPS6KB2(+):42bp before exon 3	GRCh37	DUPLICATION	RPS6KB2 (NM_003952) rearrangement: c.120-43_chr11:g.67176716dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RPS6KB2:TBC1D10C}	19832	NA	0	15	10	15
P-0021700-T01-IM6	SOMATIC	BRIP1	BPTF	17	17	59761157	65862975	Exon 20 of BRIP1(-)	Intron of BPTF(+):172bp after exon 3	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.3250_g.65862975del	PRECISE		MANUAL_OK	3to5	-	6101818	NA	0	5	10	5
P-0021695-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859289	42873272	Intron of TMPRSS2(-):1Kb after exon 5	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement: c.556+1032_c.56-3156dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	13983	NA	0	70	10	80
P-0011048-T02-IM6	SOMATIC	PPIL2	ETV6	22	12	22041881	12038867	Intron of PPIL2(+):50bp before exon 13	Exon 7 of ETV6(+)	GRCh37	TRANSLOCATION	PPIL2 (NM_014337) - ETV6 (NM_001987) Rearrangement : t(12;22)(p13.2;q11.22)(chr12:g.12038867::chr22:g.22041881)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PPIL2:ETV6}	0	NA	0	11	10	11
P-0021721-T01-IM6	SOMATIC	KMT2D	DHH	12	12	49421954	49476991	Intron of KMT2D(-):30bp before exon 46	IGR: 6Kb before DHH(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: chr12:g.49421954_c.14383-30del	PRECISE		MANUAL_OK	3to5	-	55037	NA	0	8	10	8
P-0021751-T01-IM6	SOMATIC	LOC101928767	TBX3	14	12	86219398	115110076	IGR: 182Kb before LOC101928767(+)	Exon 8 of TBX3(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(12;14)(q24.21;q31.3)(chr12:g.115110076::chr14:g.86219398)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	10
P-0021719-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	72400977	72495724	Exon 2 of NEGR1(-)	Intron of NEGR1(-):95Kb before exon 2	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.177-94730_c.194del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	94747	NA	0	28	10	28
P-0021728-T01-IM6	SOMATIC	ELP4	WT1	11	11	31534233	32449975	Intron of ELP4(+):3Kb after exon 1	Intron of WT1(-):67bp after exon 2	GRCh37	INVERSION	WT1 (NM_024426) - ELP4 (NM_019040) rearrangement: c.769+68:WT1_c.223+2679:ELP4del	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {WT1:ELP4}	915742	NA	0	26	10	27
P-0021747-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71945397	71946257	Exon 20 of INPPL1(+)	Intron of INPPL1(+):10bp after exon 22	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.2285_c.2503+10del	PRECISE		MANUAL_OK	3to3	Antisense Fusion	860	NA	0	59	10	59
P-0021742-T01-IM6	SOMATIC	CASZ1	MTOR	1	1	10772821	11273053	5-UTR of CASZ1(-):74Kb before coding start	Intron of MTOR(-):88bp before exon 22	GRCh37	DUPLICATION	CASZ1 (NM_001079843) - MTOR (NM_004958) Rearrangement : c.-76-722:CASZ1_c.3286-88:MTORdup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CASZ1:MTOR}	500232	NA	0	17	10	18
P-0021725-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46212590	46231268	Intron of ARID2(+):919bp after exon 5	Intron of ARID2(+):12bp before exon 10	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.637+919_c.1121-13del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	18678	NA	0	42	10	45
P-0021726-T01-IM6	SOMATIC	AGBL4	CSDE1	1	1	49480052	115282235	Intron of AGBL4(-):31Kb after exon 5	Intron of CSDE1(-):77bp after exon 4	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: chr1:g.49480052_c.337+78:CSDE1inv	PRECISE		MANUAL_OK	3to3	-	65802183	NA	0	18	10	18
P-0021726-T01-IM6	SOMATIC	TERT	TRIO	5	5	1295323	14184925	Promoter of TERT(-):42Kb from tx start	Intron of TRIO(+):41Kb after exon 1	GRCh37	DELETION	TERT (NM_198253) - TRIO (NM_007118) rearrangement: c.157+40934:TRIO_c.-219:TERTdel	PRECISE		MANUAL_OK	3to5	-	12889602	NA	0	126	10	143
P-0021826-T01-IM6	SOMATIC	RIT1	PMF1-BGLAP	1	1	155880066	156194609	Intron of RIT1(-):174bp after exon 3	Intron of PMF1-BGLAP(+):11Kb before exon 2	GRCh37	INVERSION	RIT1 (NM_006912) - PMF1-BGLAP (NM_001199662) rearrangement: c.163+175:RIT1_c.162-7502:PMF1-BGLAPinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RIT1:PMF1-BGLAP}	314543	NA	0	10	10	10
P-0021826-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68753480	68963870	Intron of RAD51B(+):5Kb before exon 8	Intron of RAD51B(+):29Kb after exon 10	GRCh37	DELETION	RAD51B (NM_133509) rearrangement: c.757-5121_c.1036+28903del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	210390	NA	0	9	10	9
P-0021826-T01-IM6	SOMATIC	ANKRD11	FGFR2	16	10	89538175	123243799	5-UTR of ANKRD11(-):203Kb before coding start	Intron of FGFR2(-):482bp before exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ANKRD11 (NM_013275) rearrangement: t(10,16)(q26.13,q24.3)(chr10:g.123243799::chr16:g.89538175)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FGFR2:ANKRD11}	0	NA	0	51	10	58
P-0021826-T01-IM6	SOMATIC	SETD2	KLHL18	3	3	47155551	47362971	Intron of SETD2(-):57bp before exon 5	Intron of KLHL18(+):1Kb before exon 3	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.4587-57:SETD2_chr3:g.47362971del	PRECISE		MANUAL_OK	3to5	-	207420	NA	0	14	10	17
P-0021826-T01-IM6	SOMATIC	TRAPPC9	AGO2	8	8	140884979	141559353	Intron of TRAPPC9(-):13Kb after exon 21	Exon 12 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.1448:AGO2_c.3349+13144:TRAPPC9del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AGO2:TRAPPC9}	674374	NA	0	23	0	26
P-0021829-T01-IM6	SOMATIC	ETV1	WIPF3	7	7	13946110	29894609	Exon 10 of ETV1(-)	Intron of WIPF3(+):20Kb after exon 2	GRCh37	DELETION	ETV1 (NM_001163147) rearrangement: chr7:g.29894609_c.986:ETV1del	PRECISE		MANUAL_OK	3to5	-	15948499	NA	0	3	10	3
P-0021831-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226544	2228123	Exon 27 of DOT1L(+)	Intron of DOT1L(+):997bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4024_c.4606+997inv	IMPPRECISE		MANUAL_OK	5to5	-	1579	NA	0	6	0	6
P-0021804-T01-IM6	SOMATIC	ERBB3	KMT2E	12	7	56493836	104661375	Intron of ERBB3(+):23bp after exon 25	5-UTR of KMT2E(+):20Kb before coding start	GRCh37	TRANSLOCATION	KMT2E (NM_018682) - ERBB3 (NM_001982) rearrangement: t(7;12)(q22.3;q13.2)(chr7:g.104661375::chr12:g.56493836)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {KMT2E:ERBB3}	0	NA	0	6	10	6
P-0021822-T01-IM6	SOMATIC	AKT2	RSG1	19	1	40762860	16550370	Exon 3 of AKT2(-)	IGR: 8Kb before RSG1(-)	GRCh37	TRANSLOCATION	AKT2 (NM_001626) rearrangement: t(1,19)(p36.13,q13.2)(chr1:g.16550370::chr19:g.40762860)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	37	10	40
P-0021823-T01-IM6	SOMATIC	NKX2-8	FOXA1	14	14	37080537	38060883	IGR: 31Kb before NKX2-8(-)	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	FOXA1 (NM_004496) rearrangement: c.1106:FOXA1_chr14:g.37080537dup	PRECISE		MANUAL_OK	5to3	-	980346	NA	0	18	10	20
P-0021823-T01-IM6	SOMATIC	HNRNPC	ETV1	14	7	21735813	14026320	5-UTR of HNRNPC(-):56Kb before coding start	Intron of ETV1(-):10bp before exon 4	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) rearrangement: t(7,14)(p21.1,q11.2)(chr7:g.14026320::chr14:g.21735813)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {HNRNPC:ETV1}	0	NA	0	20	10	22
P-0016507-T02-IM6	SOMATIC	NTRK3	ETV6	15	12	88488820	12023709	Intron of NTRK3(-):5Kb before exon 15	Intron of ETV6(+):806bp after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-14 fused with NTRK3 exons 6-20 including the kinase domain): t(12,15)(p13.2,q25.3)(chr12:g.12023709::chr15:g.88488820)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	143	10	142
P-0016507-T02-IM6	SOMATIC	CDK12	STAT5B	17	17	37672113	40354107	Intron of CDK12(+):52bp after exon 9	Intron of STAT5B(-):225bp before exon 19	GRCh37	DELETION	CDK12 (NM_016507) -  STAT5B (NM_012448) rearrangement: c.2846+52:CDK12_c.2238-225:STAT5Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2681994	NA	0	33	10	34
P-0021675-T01-IM6	SOMATIC	KANSL2	KMT2D	12	12	49058503	49444740	Intron of KANSL2(-):3Kb after exon 7	Exon 10 of KMT2D(-)	GRCh37	DUPLICATION	KANSL2 (NM_017822) - KMT2D (NM_003482) rearrangement: c.973+2973:KANSL2_c.2726:KMT2Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KANSL2:KMT2D}	386237	NA	0	27	10	35
P-0021679-T01-IM6	SOMATIC	TET1	TET1	10	10	70406065	70407777	Exon 4 of TET1(+)	Intron of TET1(+):1Kb after exon 4	GRCh37	INVERSION	TET1 (NM_030625) rearrangement: c.3579_c.4276+1015inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1712	NA	0	71	10	69
P-0021679-T01-IM6	SOMATIC	NFKBIA	LRFN5	14	14	35872922	41759428	Exon 2 of NFKBIA(-)	IGR: 317Kb before LRFN5(+)	GRCh37	INVERSION	NFKBIA (NM_020529) rearrangement: c.310_chr14:g.:41759428inv	PRECISE		MANUAL_OK	3to3	-	5886506	NA	0	37	10	37
P-0021680-T01-IM6	SOMATIC	TMEM127	LRP1B	2	2	96924655	141450189	Intron of TMEM127(-):4Kb before exon 3	Intron of LRP1B(-):8Kb after exon 41	GRCh37	INVERSION	TMEM127 (NM_001193304) - LRP1B (NM_018557) rearrangement: c.245-3920:TMEM127_c.6799+7630: LRP1Binv	PRECISE		MANUAL_OK	3to3	-	44525534	NA	0	8	10	8
P-0021698-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819660	42872583	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.56-2467:TMPRSS2_c.19-2116:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3052923	NA	0	73	10	79
P-0021711-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40054074	42870684	IGR: 57Kb before LINC00114(-)	Intron of TMPRSS2(-):568bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-568_chr21:g.40054074del	PRECISE		MANUAL_OK	3to5	-	2816610	NA	0	9	10	9
P-0021833-T01-IM6	SOMATIC	WHSC1L1	AP3M2	8	8	38156940	41953873	Intron of WHSC1L1(-):21bp after exon 15	IGR: 57Kb before AP3M2(+)	GRCh37	INVERSION	WHSC1L1 (NM_023034) Rearrangement : c.2758+22:WHSC1L1_chr8:g.41953873inv	PRECISE		MANUAL_OK	5to5	-	3796933	NA	0	27	10	29
P-0021863-T01-IM6	SOMATIC	SPG11	B2M	15	15	44883857	45007539	Intron of SPG11(-):671bp after exon 27	Intron of B2M(+):81bp before exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: g.44883857_c.68-82del	PRECISE		MANUAL_OK	3to5	-	123682	NA	0	5	10	5
P-0021873-T01-IM6	SOMATIC	SRRM4	DROSHA	12	5	119252705	31483658	IGR: 167Kb before SRRM4(+)	Intron of DROSHA(-):2bp after exon 15	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;12)(p13.3;q24.23)(chr5:g.31483658::chr12:g.119252705)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	84	10	96
P-0021860-T01-IM6	SOMATIC	KRAS	KRAS	12	12	25379066	25380196	Intron of KRAS(-):359bp before exon 4	Exon 3 of KRAS(-)	GRCh37	INVERSION	KRAS (NM_033360) rearrangement : c.291-359_c.262inv	PRECISE		MANUAL_OK	3to3	-	1130	NA	0	6	10	6
P-0021862-T01-IM6	SOMATIC	NPTX2	PARK2	7	6	98151994	162206907	IGR: 95Kb before NPTX2(+)	Exon 7 of PARK2(-)	GRCh37	TRANSLOCATION	PARK2 (NM_004562) rearrangement: t(6;7)(p22.3;q22.1)(chr6:g.162206907::chr7:g.98151994)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	76	10	74
P-0021887-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55194262	55223158	Intron of EGFR(+):16Kb before exon 2	Intron of EGFR(+):364bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.89-15717_c.890-365del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	28896	NA	0	106	10	606
P-0021875-T01-IM6	SOMATIC	MIR8068	ARID1A	11	1	28733802	27097647	IGR: 235Kb before MIR8068(-)	Exon 12 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1,11)(p36.11,p14.1)(chr1:g.27097647::chr11:g.28733802)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	10	31
P-0021893-T01-IM6	SOMATIC	FGFR1	ADAM32	8	8	38283616	38968969	Intron of FGFR1(-):23bp after exon 7	Intron of ADAM32(+):4Kb after exon 1	GRCh37	INVERSION	ADAM32 (NM_145004) - FGFR1 (NM_001174067) rearrangement : c.58+3617:ADAM32_c.838+24:FGFR1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ADAM32:FGFR1}	685353	NA	0	5	8	4
P-0021895-T01-IM6	SOMATIC	KEAP1	EPHX3	19	19	10600474	15341456	Exon 4 of KEAP1(-)	Intron of EPHX3(-):316bp after exon 4	GRCh37	DELETION	EPHX3 (NM_024794) - KEAP1 (NM_203500) rearrangement: c.616+317:EPHX3_c.1381:KEAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EPHX3:KEAP1}	4740982	NA	0	20	10	22
P-0021882-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156841544	156842071	Exon 7 of NTRK1(+)	Intron of NTRK1(+):524bp after exon 7	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.847_c.850+524del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	527	NA	4	3	9	0
P-0021882-T01-IM6	SOMATIC	CIC	CIC	19	19	42798268	42798798	Intron of CIC(+):27bp after exon 17	Exon 19 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.4195+27_c.4370del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	530	NA	3	2	8	0
P-0005832-T02-IM6	SOMATIC	MUTYH	OSBPL9	1	1	45797002	52181051	Exon 14 of MUTYH(-)	Intron of OSBPL9(+):1Kb after exon 4	GRCh37	INVERSION	MUTYH (NM_001048171) - OSBPL9 (NM_148909) rearrangement: c.1286:MUTYH_c.372+1300:OSBPL9inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MUTYH:OSBPL9}	6384049	NA	0	24	10	26
P-0005832-T02-IM6	SOMATIC	NOTCH1	AGPAT2	9	9	139400890	139577712	Intron of NOTCH1(-):88bp after exon 24	Intron of AGPAT2(-):4Kb after exon 1	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - AGPAT2 (NM_006412) rearrangement: c.4014+89:NOTCH1_c.182+3916:AGPAT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH1:AGPAT2}	176822	NA	0	10	10	10
P-0021845-T01-IM6	SOMATIC	SRRM1	ARID1A	1	1	24987090	27087890	Intron of SRRM1(+):119bp before exon 10	Exon 6 of ARID1A(+)	GRCh37	DELETION	SRRM1 (NM_005839) - ARID1A (NM_006015) rearrangement: c.1316-120:SRRM1_c.2177:ARID1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SRRM1:ARID1A}	2100800	NA	0	57	10	61
P-0021922-T01-IM6	SOMATIC	KMT2D	TMBIM6	12	12	49445057	50140870	Exon 10 of KMT2D(-)	Intron of TMBIM6(+):5Kb after exon 1	GRCh37	INVERSION	TMBIM6 (NM_001098576) - KMT2D (NM_003482) rearrangement: c.144+4807:TMBIM6_c.2409:KMT2Dinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TMBIM6:KMT2D}	695813	NA	0	34	10	42
P-0021925-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148427784	148543583	Intron of CUL1(+):430bp after exon 2	Exon 3 of EZH2(-)	GRCh37	DELETION	CUL1 (NM_003592) - EZH2 (NM_004456) rearrangement: c.140+430:CUL1_c.225:EZH2del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	115799	NA	0	19	10	19
P-0021851-T01-IM6	SOMATIC	CACNA2D3	ARID1A	3	1	54736714	27059380	Intron of CACNA2D3(+):50Kb before exon 12	Intron of ARID1A(+):97bp after exon 4	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;3)(p36.11;p14.3))(chr1:g.27059380::chr3:g.54736714)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	13	10	10
P-0021939-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683347	128665058	Intron of EWSR1(+):224bp after exon 8	Intron of FLI1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) and FLI1 (NM_002017) fusion (EWSR1 exon 8 fused to FLI1 exon 6): t(11;22)(q24.3;q12.2)( chr11:g.128665058::chr22:g.29683347)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	8	10	8
P-0021064-T01-IM6	SOMATIC	NF1	NF1	17	17	29592281	29614567	Exon 36 of NF1(+)	Intron of NF1(+):22Kb after exon 36	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4759_c.4835+22210del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22286	NA	0	2	8	2
P-0021947-T01-IM6	SOMATIC	EWSR1	SEC14L3	22	22	29687298	30868661	Intron of EWSR1(+):255bp before exon 10	Promoter of SEC14L3(-):13Kb from tx start	GRCh37	DELETION	EWSR1 (NM_013986) Rearrangement : c.794-828:EWSR1_c.-716:SEC14LR	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1181363	NA	0	44	10	52
P-0022029-T01-IM6	SOMATIC	CD79B	SMURF2	17	17	62007656	62601182	Exon 3 of CD79B(-)	Intron of SMURF2(-):2Kb after exon 2	GRCh37	DELETION	SMURF2 (NM_022739) - CD79B (NM_001039933) Rearrangement : c.91+1538:SMURF2_c.211:CD79B	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMURF2:CD79B}	593526	NA	0	3	10	3
P-0022003-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212280645	212295548	Intron of ERBB4(-):5Kb after exon 25	Intron of ERBB4(-):121bp after exon 21	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.2643+122_c.3135+4521del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	14903	NA	0	3	7	3
P-0022179-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869454	42870251	Intron of TMPRSS2(-):591bp after exon 2	Intron of TMPRSS2(-):135bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-135_c.126+592del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	797	NA	0	58	10	68
P-0022091-T01-IM6	SOMATIC	XIRP1	EPHA3	3	3	39218520	89498448	IGR: 6Kb before XIRP1(-)	Exon 14 of EPHA3(+)	GRCh37	DELETION	EPHA3 (NM_005233) Rearrangement: chr3:g.39218520_c.2420:EPHA3del	PRECISE		MANUAL_OK	3to5	-	50279928	NA	0	8	10	8
P-0022015-T01-IM6	SOMATIC	SLC6A14	CBFB	X	16	115585009	67063698	Intron of SLC6A14(+):480bp before exon 10	Exon 2 of CBFB(+)	GRCh37	TRANSLOCATION	CBFB (NM_022845) - SLC6A14 (NM_007231) rearrangement: t(X;16)(q23;q22.1)(chrX:g.115585009::chr16:g.67063698)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CBFB:SLC6A14}	0	NA	0	18	10	18
P-0021902-T02-IM6	SOMATIC	RUNX2	SPEN	6	1	45466461	16261226	Intron of RUNX2(+):7Kb after exon 4	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	RUNX2 (NM_001024630) - SPEN (NM_015001)rearrangement: t(1;6)(p36.13;p21.1)(chr1:g.16261226::chr6:g.45466461)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RUNX2:SPEN}	0	NA	0	76	10	83
P-0022306-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187555378	187557342	Intron of FAT1(-):401bp before exon 7	Exon 6 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement: c.4020_c.4184-401del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1964	NA	0	17	10	17
P-0022142-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41257736	41266122	5-UTR of CTNNB1(+):8Kb before coding start	Exon 3 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-7776_c.119del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8386	NA	0	64	10	65
P-0022006-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486495	57487647	Intron of NAB2(+):131bp after exon 3	Intron of NAB2(+):266bp after exon 6	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1091+131_c.1468+266inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1152	NA	0	2	7	2
P-0022100-T01-IM6	SOMATIC	UIMC1	NSD1	5	5	176336370	176618830	Intron of UIMC1(-):675bp before exon 13	Intron of NSD1(+):54bp before exon 3	GRCh37	DELETION	NSD1 (NM_022455) Rearrangement : c.928-55:NSD1_c.1677-675:UIMC1del	PRECISE		MANUAL_OK	3to5	-	282460	NA	0	26	10	26
P-0022032-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269017	55272189	Exon 25 of EGFR(+)	Intron of EGFR(+):759bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.3083_c.3272-760del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3172	NA	0	7	10	8
P-0021974-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88550500	12028417	Intron of NTRK3(-):26Kb after exon 14	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12028417::chr15:g.88550500)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	66	10	66
P-0022094-T01-IM6	SOMATIC	MBTD1	RNF43	17	17	49297932	56436355	Intron of MBTD1(-):108bp before exon 4	Intron of RNF43(-):171bp before exon 9	GRCh37	DUPLICATION	MBTD1 (NM_017643) - RNF43 (NM_017763) Rearrangement: c.155-108:MBTD1_c.953-171:RNF43dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MBTD1:RNF43}	7138423	NA	0	2	9	2
P-0022377-T01-IM6	SOMATIC	EP400NL	POLE	12	12	132609375	133225638	5-UTR of EP400NL(+):2Kb before coding start	Exon 32 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: chr12:g132609375_.c.4026:POLEinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {POLE:EP400NL}	616263	NA	0	4	5	4
P-0019942-T02-IM6	SOMATIC	PPM1D	BCAS3	17	17	58740396	58751550	Exon 6 of PPM1D(+)	IGR: 4Kb before BCAS3(+)	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: c.1301_g.58751550del	PRECISE		MANUAL_OK	3to5	-	11154	NA	0	59	10	106
P-0019942-T02-IM6	SOMATIC	EDIL3	FGFR4	5	5	84317202	176522592	IGR: 1Mb before EDIL3(-)	Exon 13 of FGFR4(+)	GRCh37	DELETION	FGFR4 (NM_213647) rearrangement: g.84317202_c.1689del	PRECISE		MANUAL_OK	3to5	-	92205390	NA	0	5	10	5
P-0022046-T01-IM6	SOMATIC	RRNAD1	NTRK1	1	1	156703825	156844980	Exon 6 of RRNAD1(+)	Intron of NTRK1(+):180bp after exon 11	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: g.156703825_c.1354+180inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	141155	NA	0	117	10	116
P-0022046-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153330456	153332585	Intron of FBXW7(-):2Kb after exon 2	Exon 2 of FBXW7(-)	GRCh37	DELETION	FBXW7 (NM_033632) rearrangement: c.501+1999_c.371del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2129	NA	0	22	10	23
P-0021980-T01-IM6	SOMATIC	RET	TIMM23B	10	10	43610550	51584025	Intron of RET(+):366bp after exon 11	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-8 fused to RET exons 12- 20): c.763-591:NCOA4_c.2136+366:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7973475	NA	0	13	10	38
P-0022110-T01-IM6	SOMATIC	GK	ERBB2	X	17	30637819	37883536	IGR: 34Kb before GK(+)	Intron of ERBB2(+):11bp before exon 26	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(17;X)(q12;p21.2)(chr17:g.37883536::chrX:g.30637819)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	8
P-0022083-T01-IM6	SOMATIC	STAT3	PTRF	17	17	40497676	40549182	Intron of STAT3(-):1bp before exon 4	IGR: 5Kb before PTRF(-)	GRCh37	DELETION	STAT3 (NM_139276) Rearrangement : c.274-1:STAT3_chr17:g.40549182del	PRECISE		MANUAL_OK	3to5	-	51506	NA	0	5	10	6
P-0022083-T01-IM6	SOMATIC	EWSR1	KATNBL1	22	15	29686911	34430755	Intron of EWSR1(+):642bp before exon 10	Promoter of KATNBL1(-):2Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) Rearrangement : t(15;22)(q14;q12.2)(chr15:g.34430755::chr22:g.29686911)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	23
P-0022372-T01-IM6	SOMATIC	CD74	NBPF20	5	1	149782962	145430829	Intron of CD74(-):87bp before exon 7	Intron of NBPF20(+):66Kb after exon 99	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NBPF10 (NM_001039703) rearrangement: t(1;5)(q21.1;q32)(chr1:g.145430829::chr5:g.149782962)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	10
P-0022372-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117649031	117704135	Intron of ROS1(-):1Kb before exon 33	Intron of ROS1(-):344bp after exon 16	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.2496+345_c.5367-1454inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	55104	NA	0	32	10	34
P-0021997-T01-IM6	SOMATIC	SPAG5	ERBB2	17	17	26915733	37879843	Intron of SPAG5(-):2Kb before exon 5	Exon 18 of ERBB2(+)	GRCh37	INVERSION	ERBB2 (NM_004448) - SPAG5 (NM_006461) rearrangement: c.2138:ERBB2_c.1438-2216:SPAG5inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERBB2:SPAG5}	10964110	NA	0	31	0	31
P-0021997-T01-IM6	SOMATIC	NHS	KDM5C	X	X	17218600	53223108	IGR: 175Kb before NHS(+)	Intron of KDM5C(-):75bp before exon 24	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.4039-75:KDM5C_chrX:g.17218600inv	PRECISE		MANUAL_OK	3to3	-	36004508	NA	0	14	10	13
P-0022170-T01-IM6	SOMATIC	FGFR4	NSD1	5	5	176518122	176575380	Intron of FGFR4(+):17bp after exon 5	Intron of NSD1(+):12Kb after exon 2	GRCh37	DELETION	FGFR4 (NM_213647) - NSD1 (NM_022455) rearrangement: c.603+17:FGFR4_c.927+12349:NSD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR4:NSD1}	57258	NA	0	5	10	5
P-0022088-T01-IM6	SOMATIC	TP53	TP53	17	17	7573332	7576621	Intron of TP53(-):324bp before exon 11	Intron of TP53(-):231bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) Rearrangement: c.993+232_c.1101-324del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3289	NA	0	12	10	25
P-0022088-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56178035	56179797	Exon 14 of MAP3K1(+)	Intron of MAP3K1(+):291bp after exon 15	GRCh37	DELETION	MAP3K1 (NM_005921) Rearrangement : c.3008_c.3819+291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1762	NA	0	71	10	144
P-0022257-T01-IM6	SOMATIC	BRAF	EPB41	7	1	140482687	29424227	Intron of BRAF(-):133bp after exon 10	Intron of EPB41(+):91bp before exon 16	GRCh37	TRANSLOCATION	EPB41 (NM_001166005) - BRAF (NM_004333) fusion (EPB41 exons 1-5 fused in-frame with BRAF exons 11-18): t(1;7)(p35.4;q34)(chr1:g.29424227::chr7:g.140482687)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EPB41:BRAF}	0	NA	0	19	10	20
P-0021979-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	419167	421161	Intron of KDM5A(-):37bp before exon 22	Intron of KDM5A(-):931bp before exon 21	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.3037-931_c.3217-37inv	IMPPRECISE		MANUAL_OK	3to3	-	1994	NA	0	5	0	6
P-0022167-T01-IM6	SOMATIC	ARHGAP35	BBC3	19	19	47403073	47725067	IGR: 19Kb before ARHGAP35(+)	Exon 4 of BBC3(-)	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: chr19:g.47403073_c.677:BBC3del	PRECISE		MANUAL_OK	3to5	-	321994	NA	0	7	10	7
P-0022049-T01-IM6	SOMATIC	TNFSF14	SMARCA4	19	19	6645388	11144538	IGR: 18Kb before TNFSF14(-)	Exon 27 of SMARCA4(+)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: g.6645388_c.3870inv	PRECISE		MANUAL_OK	3to3	-	4499150	NA	0	95	10	93
P-0022143-T01-IM6	SOMATIC	ERCC2	ERCC2	19	19	45864954	45867309	Intron of ERCC2(-):54bp before exon 12	Exon 10 of ERCC2(-)	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.884_c.1119-54inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2355	NA	0	30	10	43
P-0022143-T01-IM6	SOMATIC	CCNE1	F2RL1	19	5	30313392	76125149	Exon 11 of CCNE1(+)	Intron of F2RL1(+):3Kb before exon 2	GRCh37	TRANSLOCATION	CCNE1 (NM_001238) rearrangement: t(5;19)(q13.3;q12)(chr5:g.76125149::chr19:g.30313392)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	9	0	17
P-0002841-T03-IM6	SOMATIC	BCAS3	BRIP1	17	17	58855288	59853694	Intron of BCAS3(+):30Kb before exon 7	Intron of BRIP1(-):67bp after exon 14	GRCh37	DELETION	BRIP1 (NM_032043) - BCAS3 (NM_001099432) rearrangement: c.2097+69:BRIP1_c.404-30077:BCAS3del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	998406	NA	0	6	10	6
P-0022185-T01-IM6	SOMATIC	PVT1	PAX8	8	2	129096859	113979260	5-UTR of PVT1(+):17Kb before coding start	Intron of PAX8(-):2Kb before exon 11	GRCh37	TRANSLOCATION	PAX8 (NM_003466)  rearrangement: t(2;8)(q13;q24.21)(chr2:g.113979260::chr8:g.129096859)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {PAX8:PVT1}	0	NA	0	26	10	28
P-0022118-T01-IM6	SOMATIC	CIC	CIC	19	19	42797967	42799047	Exon 16 of CIC(+)	Exon 20 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement : c.4019_c.4531inv	PRECISE		MANUAL_OK	5to5	-	1080	NA	0	3	8	3
P-0022058-T01-IM6	SOMATIC	MAD1L1	CARD11	7	7	2011922	2968399	Intron of MAD1L1(-):8Kb after exon 15	Intron of CARD11(-):67bp before exon 13	GRCh37	DUPLICATION	MAD1L1 (NM_001013837) - CARD11 (NM_032415) rearrangement: c.1505+8166:MAD1L1_c.1654-67:CARD11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MAD1L1:CARD11}	956477	NA	0	21	10	24
P-0022013-T01-IM6	SOMATIC	SUZ12	ZCCHC7	17	9	30325722	37204195	Exon 16 of SUZ12(+)	Intron of ZCCHC7(+):77Kb after exon 2	GRCh37	TRANSLOCATION	ZCCHC7 (NM_032226) - SUZ12 (NM_015355) rearrangement: t(9;17)(p13.2;q11.2)(chr9:g.37204195::chr17:g.30325722)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZCCHC7:SUZ12}	0	NA	0	13	10	19
P-0022092-T01-IM6	SOMATIC	CDKN1B	ALG10B	12	12	12871669	38741621	Intron of CDKN1B(+):89bp before exon 2	IGR: 31Kb before ALG10B(+)	GRCh37	INVERSION	CDKN1B (NM_004064) Rearrangement : c.476-90:CDKN1B_chr12:g.38741621inv	PRECISE		MANUAL_OK	5to5	-	25869952	NA	0	3	7	4
P-0022197-T01-IM6	SOMATIC	ARID2	LOC100507195	12	12	46246771	68840062	Intron of ARID2(+):92bp after exon 15	3-UTR of LOC100507195(-):5Kb after coding stop	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.4773+92_chr12:g.68840062inv	PRECISE		MANUAL_OK	3to3	-	22593291	NA	0	17	10	17
P-0022197-T01-IM6	SOMATIC	CCT2	POLE	12	12	69993677	133219159	Exon 15 of CCT2(+)	Exon 37 of POLE(-)	GRCh37	INVERSION	CCT2 (NM_006431) - POLE (NM_006231) rearrangement: c.1470:CCT2_c.4885:POLEinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CCT2:POLE}	63225482	NA	0	77	0	76
P-0022189-T01-IM6	SOMATIC	TMPRSS2	SKIL	21	3	42867710	170075134	Intron of TMPRSS2(-):1Kb before exon 3	Promoter of SKIL(+):338bp from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - SKIL (NM_001248008) rearrangement: t(3;21)(q26.2;q22.3)(chr3:g.170075134::chr21:g.42867710)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TMPRSS2:SKIL}	0	NA	0	19	10	31
P-0022364-T01-IM6	SOMATIC	UHMK1	PARP1	1	1	162434663	226553616	IGR: 32Kb before UHMK1(+)	Intron of PARP1(-):38bp after exon 18	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: chr1:g.162434663_c.2505+39inv	PRECISE		MANUAL_OK	5to5	-	64118953	NA	0	3	10	3
P-0022364-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59794190	59854028	Intron of BRIP1(-):766bp before exon 17	Intron of BRIP1(-):105bp before exon 14	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.2380-766_c.1936-105inv	PRECISE		MANUAL_OK	3to3	-	59838	NA	0	27	10	25
P-0022240-T01-IM6	SOMATIC	PTPRS	LOC101928989	19	11	5229374	82043266	Intron of PTPRS(-):21bp before exon 16	3-UTR of LOC101928989(-):72Kb after coding stop	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(11;19)(q14.1;p13.3)(chr11:g.82043266::chr19:g.5229374)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	53	10	55
P-0022086-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	425057	427449	Intron of KDM5A(-):2Kb after exon 19	Exon 19 of KDM5A(-)	GRCh37	DELETION	KDM5A (NM_001042603) Rearrangement: c.2720_c.2897+2215del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2392	NA	0	6	0	6
P-0022128-T01-IM6	SOMATIC	SYT6	CSDE1	1	1	114598243	115261214	IGR: 34Kb before SYT6(-)	Intron of CSDE1(-):19bp after exon 20	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: chr1:g.114598243_c.2487+20:CSDE1del	PRECISE		MANUAL_OK	3to5	-	662971	NA	0	12	10	12
P-0022178-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31421635	31466855	Intron of DROSHA(-):151bp before exon 29	Intron of DROSHA(-):467bp before exon 18	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.2367-467_c.3420-151del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : in frame	45220	NA	0	6	10	6
P-0022322-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55230972	55235135	Intron of EGFR(+):453bp before exon 14	Intron of EGFR(+):2Kb after exon 15	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.1632-454_c.1880+2005del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4163	NA	0	2	4	2
P-0022005-T01-IM6	SOMATIC	RTEL1	DNAJC5	20	20	62323205	62528262	Intron of RTEL1(+):15bp after exon 28	5-UTR of DNAJC5(+):31Kb before coding start	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.2724+15:RTEL1_chr20:g.62528262del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {RTEL1:DNAJC5}	205057	NA	0	12	10	13
P-0022117-T01-IM6	SOMATIC	NTRK1	SNRPE	1	1	156838406	203839162	Exon 6 of NTRK1(+)	3-UTR of SNRPE(+):8Kb after coding stop	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.684_chr1:g.203839162inv	PRECISE		MANUAL_OK	5to5	-	47000756	NA	0	17	10	22
P-0022117-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862243	42866328	Intron of ERG(-):8Kb after exon 1	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-3 fused to ERG exons 2-10): c.304:TMPRSS2_c.18+8044:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3004085	NA	0	48	10	50
P-0021975-T01-IM6	SOMATIC	NID2	FGFR2	14	10	52482743	123240637	Intron of NID2(-):750bp before exon 15	Intron of FGFR2(-):1Kb before exon 18	GRCh37	TRANSLOCATION	NID2 (NM_007361) - FGFR2 (NM_000141) rearrangement: t(10;14)(q26.13;q22.1)(chr10:g.123240637::chr14:g.52482743)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NID2:FGFR2}	0	NA	0	103	10	123
P-0022331-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55099835	55223071	Intron of EGFR(+):13Kb after exon 1	Intron of EGFR(+):451bp before exon 8	GRCh37	DELETION	EGFR VIII (NM_005228) Intragenic deletion : c.88+12777_c.890-452del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	123236	NA	0	5	0	6
P-0003757-T02-IM6	SOMATIC	ETV6	HIST4H4	12	12	12012570	14872125	Intron of ETV6(+):6Kb after exon 4	IGR: 52Kb before HIST4H4(-)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+6075_chr12:g.14872125del	PRECISE		MANUAL_OK	3to5	-	2859555	NA	0	87	10	98
P-0003757-T02-IM6	SOMATIC	ERG	RBBP8	21	18	39763571	20594890	Intron of ERG(-):9bp after exon 8	Intron of RBBP8(+):2Kb before exon 17	GRCh37	TRANSLOCATION	RBBP8 (NM_002894) - ERG (NM_182918) rearrangement: t(18;21)(q11.2;q22.2)(chr18:g.20594890::chr21:g.39763571)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RBBP8:ERG}	0	NA	0	20	10	20
P-0022084-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94911024	94920278	Exon 8 of SESN3(-)	Intron of SESN3(-):2Kb before exon 5	GRCh37	DELETION	SESN3 (NM_144665) Rearrangement: c.526-1622_c.1106del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9254	NA	0	61	10	135
P-0022084-T01-IM6	SOMATIC	NOTCH3	NBPF18P	19	1	15281223	151973890	Exon 27 of NOTCH3(-)	IGR: 17Kb before NBPF18P(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) Rearrangement : t(1;19)(q21.3;p13.12)(chr1:g.151973890::chr19:g.15281223)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	10	50
P-0022099-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53236342	53244819	Intron of KDM5C(-):3Kb after exon 12	Intron of KDM5C(-):157bp after exon 7	GRCh37	DELETION	KDM5C (NM_004187) Rearrangement : c.963+158_c.1746+3254del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	8477	NA	0	2	6	3
P-0022358-T01-IM6	SOMATIC	XIAP	XIAP	X	X	123002097	123034271	5-UTR of XIAP(+):17Kb before coding start	Intron of XIAP(+):71bp before exon 6	GRCh37	DELETION	XIAP (NM_001167) rearrangement: c.-33+7954_c.1100-72del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	32174	NA	0	16	10	17
P-0003100-T02-IM6	SOMATIC	NPAT	ATM	11	11	108066234	108159618	Intron of NPAT(-):1Kb before exon 3	Intron of ATM(+):85bp before exon 28	GRCh37	DELETION	NPAT (NM_002519) - ATM (NM_000051) Rearrangement: c.157-1490:NPAT_c.4110-87:ATMdel	PRECISE		MANUAL_OK	3to5	-	93384	NA	0	16	10	17
P-0022286-T01-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48894476	79960239	Intron of TFE3(-):1Kb after exon 5	Intron of ASPSCR1(+):6Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused to TFE3 exons 6-10): t(17;X)(q25.3;p11.23)(chr17:g.79960239::chrX:g.48894476)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	10	10	10
P-0022380-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610659	61644070	Intron of RET(+):475bp after exon 11	Intron of CCDC6(-):22Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20 ): c.303+21810:CCDC6_c.2136+475:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18033411	NA	0	14	10	21
P-0022291-T01-IM6	SOMATIC	ERG	SBF1P1	21	8	39755302	56467286	3-UTR of ERG(-):22bp after coding stop	IGR: 106Kb before SBF1P1(-)	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(8;21)(q12.1;q22.2)(chr8:g.56467286::chr21:g.39755302)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	21	10	22
P-0022291-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76926078	76939063	Intron of ATRX(-):6Kb after exon 10	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.1685_c.3809+5643inv	PRECISE		MANUAL_OK	3to3	-	12985	NA	0	43	10	43
P-0022456-T01-IM6	SOMATIC	FGFR1	SP3	8	2	38276953	174604210	Intron of FGFR1(-):97bp after exon 10	IGR: 167Kb before SP3(-)	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) rearrangement: t(2;8)(q31.1;p11.23)(chr2:g.174604210::chr8:g.38276953)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	10	39
P-0022348-T01-IM6	SOMATIC	ETV6	PABPC1P2	12	2	12022241	146814969	Intron of ETV6(+):116bp before exon 5	IGR: 530Kb before PABPC1P2(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(2;12)(q22.3;p13.2)(chr2:g.146814969::chr12:g.12022241)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	44	10	47
P-0022444-T01-IM6	SOMATIC	USHBP1	KDM5A	19	12	17358572	459868	Promoter of USHBP1(-):2Kb from tx start	Exon 10 of KDM5A(-)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(12;19)(p13.33;p13.11)(chr12:g.459868::chr19:g.17358572)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	47	10	67
P-0013530-T02-IM6	SOMATIC	ATM	MAP3K2	11	2	108214079	128081097	Exon 57 of ATM(+)	Intron of MAP3K2(-):380bp after exon 10	GRCh37	TRANSLOCATION	ATM (NM_000051) - MAP3K2 (NM_006609) rearrangement: t(2;11)(q14.3;q22.3)(chr2:g.128081097::chr11:g.108214079)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATM:MAP3K2}	0	NA	0	136	10	325
P-0022446-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39888600	42868538	Intron of ERG(-):59Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.126+1508:TMPRSS2_c.39+58986:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2979938	NA	0	61	10	75
P-0022425-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187627081	187628250	Intron of FAT1(-):635bp after exon 2	Exon 2 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.2732_c.3265+636inv	PRECISE		MANUAL_OK	3to3	-	1169	NA	0	82	10	78
P-0006424-T02-IM6	SOMATIC	KMT2C	PUM1	7	1	151873311	31532327	Exon 38 of KMT2C(-)	Exon 2 of PUM1(-)	GRCh37	TRANSLOCATION	PUM1 (NM_001020658) - KMT2C (NM_170606) rearrangement: t(1;7)(p35.2;q36.1)(chr1:g.31532327::chr7:g.151873311)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PUM1:KMT2C}	0	NA	0	14	10	14
P-0022284-T01-IM6	SOMATIC	SCNN1B	PALB2	16	16	23378821	23625246	Intron of SCNN1B(+):355bp before exon 5	Intron of PALB2(-):78bp after exon 11	GRCh37	DELETION	PALB2 (NM_024675) - SCNN1B (NM_000336) rearrangement: c.3201+79:PALB2_c.777-356:SCNN1Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	246425	NA	0	82	10	83
P-0022337-T01-IM6	SOMATIC	NRG3	FGFR2	10	10	84208501	123241723	Intron of NRG3(+):90Kb after exon 3	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	NRG3 (NM_001010848) - FGFR2 (NM_000141) Rearrangement : c.953+89877:NRG3_c.2301+1489:FGFR2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NRG3:FGFR2}	39033222	NA	0	38	10	39
P-0022337-T01-IM6	SOMATIC	TBC1D4	FGFR2	13	10	75946348	123241723	Intron of TBC1D4(-):10Kb before exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - TBC1D4 (NM_014832) Rearrangement : t(10;13)(q26.13;q22.2)(chr10:g.123241723::chr13:g.75946348)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:TBC1D4}	0	NA	0	70	10	79
P-0022337-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47043163	47044822	Intron of RBM10(+):1Kb before exon 18	Intron of RBM10(+):18bp before exon 20	GRCh37	DELETION	RBM10 (NM_001204468) Rearrangement: c.2146-1291_c.2362-19del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1659	NA	0	10	10	16
P-0022420-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39976055	42871772	3-UTR of ERG(-):58Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1656:TMPRSS2_c.-149-19186:ERGdel	PRECISE		MANUAL_OK	3to5	-	2895717	NA	0	70	10	87
P-0022383-T01-IM6	SOMATIC	RERE	MTOR	1	1	8609439	11173046	Intron of RERE(-):7Kb after exon 6	Intron of MTOR(-):72bp before exon 54	GRCh37	DUPLICATION	RERE (NM_001042681) - MTOR (NM_004958) rearrangement: c.725+7095:RERE_c.7301-72:MTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RERE:MTOR}	2563607	NA	0	21	10	21
P-0022383-T01-IM6	SOMATIC	BRCA2	NUFIP1	13	13	32900465	45562034	Intron of BRCA2(+):46bp after exon 6	Intron of NUFIP1(-):1Kb after exon 1	GRCh37	INVERSION	NUFIP1 (NM_012345) - BRCA2 (NM_000059) rearrangement: c.412+1126:NUFIP1_c.516+46:BRCA2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NUFIP1:BRCA2}	12661569	NA	0	6	10	6
P-0022385-T01-IM6	SOMATIC	MDC1	SMYD3	6	1	30680457	246673483	Exon 5 of MDC1(-)	Promoter of SMYD3(-):761Kb from tx start	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(1;6)(q44;p21.33)(chr1:g.246673483::chr6:g.30680457)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMYD3:MDC1}	0	NA	0	26	10	27
P-0022421-T01-IM6	SOMATIC	PAX8	LINC01191	2	2	113984994	114793050	Intron of PAX8(-):161bp before exon 10	IGR: 56Kb before LINC01191(+)	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: chr2:g.114793050_c.1088-161:PAX8inv	PRECISE		MANUAL_OK	3to3	-	808056	NA	0	43	10	53
P-0022421-T01-IM6	SOMATIC	HIST1H3D	HIST1H3D	6	6	26197407	26201354	Exon 2 of HIST1H3D(-)	Promoter of HIST1H3D(-):4Kb from tx start	GRCh37	DELETION	HIST1H3D (NM_003530) rearrangement: c.-2287_c.72del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3947	NA	0	23	10	22
P-0022423-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89351468	89524123	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):189Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.-145+32530_c.1482del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	172655	NA	0	38	10	38
P-0022500-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683831	32414847	Intron of EWSR1(+):708bp after exon 8	Intron of WT1(-):546bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fuses with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:32414847::chr22:29683831)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	37	10	37
P-0022398-T01-IM6	SOMATIC	ALK	EML4	2	2	29448035	42500137	Intron of ALK(-):291bp after exon 19	Intron of EML4(+):8Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-7853:EML4_c.3172+292:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052102	NA	0	76	10	75
P-0022502-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139399176	139400280	Exon 26 of NOTCH1(-)	Exon 25 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) Rearrangement : c.4068_c.4967del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1104	NA	0	86	0	89
P-0022533-T02-IM6	SOMATIC	PRPF8	ERBB2	17	17	1574221	37868448	Intron of PRPF8(-):2Kb after exon 24	Intron of ERBB2(+):126bp before exon 9	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.1022-127:ERBB2_chr17:g.1574221inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ERBB2:PRPF8}	36294227	NA	0	10	10	10
P-0022533-T02-IM6	SOMATIC	CCDC130	BABAM1	19	19	13693284	17379749	IGR: 165Kb before CCDC130(+)	Exon 2 of BABAM1(+)	GRCh37	INVERSION	BABAM1 (NM_001033549) rearrangement:  chr19:g.13693284_c.134:BABAM1inv	PRECISE		MANUAL_OK	5to5	-	3686465	NA	0	39	10	107
P-0022533-T02-IM6	SOMATIC	CYP4F22	BABAM1	19	19	15602332	17379612	IGR: 17Kb before CYP4F22(+)	5-UTR of BABAM1(+):3bp before coding start	GRCh37	DELETION	BABAM1 (NM_001033549) rearrangement:  chr19:g.15602332_c.-4:BABAM1del	PRECISE		MANUAL_OK	3to5	-	1777280	NA	0	12	10	26
P-0022509-T01-IM6	SOMATIC	RAD52	RAD52	12	12	1036447	1048185	Intron of RAD52(-):18bp before exon 6	5-UTR of RAD52(-):26Kb before coding start	GRCh37	DELETION	RAD52 (NM_134424) Rearrangement : c.-18-5943_c.349-18del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	11738	NA	0	33	10	40
P-0022509-T01-IM6	SOMATIC	ALK	ARL6IP6	2	2	29446658	153686528	Intron of ALK(-):264bp before exon 20	IGR: 112Kb before ARL6IP6(+)	GRCh37	DELETION	ALK (NM_004304) Rearrangement : c.3173-264:ALK_chr2:g.153686528del	PRECISE		MANUAL_OK	3to5	-	124239870	NA	0	57	10	61
P-0011466-T02-IM6	SOMATIC	POLE	LONRF1	12	8	133263864	12565909	Exon 1 of POLE(-)	IGR: 13Kb before LONRF1(-)	GRCh37	TRANSLOCATION	POLE (NM_006231) Rearrangement : t(8;12)(p23.1;q24.33)(chr8:g.12565909::chr22:g.133263864)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	27
P-0011466-T02-IM6	SOMATIC	MAP2K1	OS9	15	12	66781643	58095338	Intron of MAP2K1(+):29bp after exon 9	Intron of OS9(+):6Kb after exon 4	GRCh37	TRANSLOCATION	MAP2K1 (NM_002755) Rearrangement : t(12;15)(q14.1;q24.33)(chr12:g.58095338::chr15:g.66781643)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	18	10	22
P-0022510-T01-IM6	SOMATIC	LINC00550	NOTCH1	13	9	68806611	139401293	IGR: 629Kb before LINC00550(-)	Exon 23 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) Rearrangement : t(9;13)(q34.3;q21.33)(chr9:g.139401293::chr13:g.68806611)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	10	54
P-0022577-T01-IM6	SOMATIC	GLI1	DRAM2	12	1	57860272	111592651	Intron of GLI1(+):100bp after exon 8	IGR: 67Kb before DRAM2(-)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(1;12)(p13.3;p13.q)(chr1:g.111592651::chr12:g.57860272)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	11	0	10
P-0022489-T01-IM6	SOMATIC	JAK2	PDCD1LG2	9	9	5054658	5484812	Exon 7 of JAK2(+)	IGR: 26Kb before PDCD1LG2(+)	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.710_chr9:g.5484812del	PRECISE		MANUAL_OK	3to5	-	430154	NA	0	8	10	9
P-0022579-T01-IM6	SOMATIC	ETV6	KIAA1467	12	12	12035084	13231513	Intron of ETV6(+):2Kb before exon 6	Intron of KIAA1467(+):1Kb before exon 12	GRCh37	DUPLICATION	KIAA1467 (NM_020853) - ETV6 (NM_001987) rearrangement: c.1643-1210:KIAA1467_c.1010-2295:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1467:ETV6}	1196429	NA	0	3	10	7
P-0005693-T03-IM6	SOMATIC	C11orf95	RELA	11	11	63532062	65430075	Exon 4 of C11orf95(-)	Intron of RELA(-):221bp after exon 1	GRCh37	DUPLICATION	C11orf95 (NM_001144936) - RELA (NM_021975) fusion (C11orf95 exons 1-4 fused with RELA exons 2-11): c.1033:C11orf95_c.7+222:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C11orf95:RELA}	1898013	NA	0	47	10	52
P-0005693-T03-IM6	SOMATIC	INPPL1	PTCH1	11	9	71941318	98211830	Intron of INPPL1(+):3bp after exon 9	Intron of PTCH1(-):225bp before exon 22	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) - INPPL1 (NM_001567) rearrangement: t(9;11)(q22.32;q13.4)(chr9:g.98211830::chr11:g.71941318)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PTCH1:INPPL1}	0	NA	0	37	10	36
P-0022431-T01-IM6	SOMATIC	TERT	GUSBP1	5	5	1264669	21230021	Exon 11 of TERT(-)	IGR: 230Kb before GUSBP1(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.2693:TERT_chr5:g.21230021del	PRECISE		MANUAL_OK	3to5	-	19965352	NA	0	2	10	4
P-0022479-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89347322	89485024	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):150Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.5628_c.-144-248del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	137702	NA	0	10	10	13
P-0022556-T01-IM6	SOMATIC	NF1	NF1	17	17	29552131	29670176	Exon 17 of NF1(+)	Intron of NF1(+):23bp after exon 48	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.1864_c.7189+23inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	118045	NA	0	36	10	36
P-0022436-T01-IM6	SOMATIC	RALGAPA1	FOXA1	14	14	36106070	38060988	Intron of RALGAPA1(-):1Kb before exon 31	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	RALGAPA1 (NM_194301) - FOXA1 (NM_004496) rearrangement: c.4159-1266:RALGAPA1_c.1001:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RALGAPA1:FOXA1}	1954918	NA	0	16	10	16
P-0022436-T01-IM6	SOMATIC	GSPT1	TERT	16	5	11963343	1260698	3-UTR of GSPT1(-):4Kb after coding stop	Exon 12 of TERT(-)	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;16)(p15.33;p13.13)(chr5:g.1260698::chr16:g.11963343)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	10	6
P-0022436-T01-IM6	SOMATIC	RCAN1	RUNX1	21	21	35948851	36171703	Intron of RCAN1(-):38Kb after exon 1	Exon 8 of RUNX1(-)	GRCh37	DUPLICATION	RCAN1 (NM_004414) - RUNX1 (NM_001754)  rearrangement: c.252+38208:RCAN1_c.862:RUNX1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RCAN1:RUNX1}	222852	NA	0	12	0	12
P-0022529-T01-IM6	SOMATIC	ALK	YPEL5	2	2	29447281	30245608	Intron of ALK(-):887bp before exon 20	IGR: 124Kb before YPEL5(+)	GRCh37	DELETION	ALK (NM_004304) Rearrangement : c.3173-887:ALK_chr2:g.30245608del	PRECISE		MANUAL_OK	3to5	-	798327	NA	0	36	10	36
P-0022578-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962266	117652158	Intron of SDC4(-):557bp before exon 3	Intron of ROS1(-):2Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117652158::chr20:g.43962266)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	7	10	9
P-0022482-T01-IM6	SOMATIC	CARD11	SDK1	7	7	2978422	3588919	Exon 7 of CARD11(-)	Intron of SDK1(+):70Kb before exon 2	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.908_chr7:g.3588919del	PRECISE		MANUAL_OK	3to5	-	610497	NA	0	41	10	42
P-0022550-T01-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	106506917	106509610	5-UTR of PIK3CG(+):1Kb before coding start	Exon 2 of PIK3CG(+)	GRCh37	INVERSION	PIK3CG (NM_002649) rearrangement: c.-13+696_c.1604inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2693	NA	0	27	10	26
P-0022475-T01-IM6	SOMATIC	KANSL1	FLT1	17	13	44158690	28963950	Intron of KANSL1(-):1Kb after exon 5	Exon 13 of FLT1(-)	GRCh37	TRANSLOCATION	FLT1 (NM_002019) rearrangement: t(13;17)(q12.3;q21.31)(chr13:g.28963950::chr17:g.44158690)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	14
P-0022480-T01-IM6	SOMATIC	C17orf112	RPTOR	17	17	50474068	78919486	IGR: 589Kb before C17orf112(+)	Exon 26 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: chr17:g.50474068_c.3045del	PRECISE		MANUAL_OK	3to5	-	28445418	NA	0	12	10	12
P-0022526-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27021330	27023650	Promoter of ARID1A(+):1Kb from tx start	Exon 1 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) Rearrangement : c.-1565_c.756del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2320	NA	0	72	10	81
P-0022557-T01-IM6	SOMATIC	TMPRSS2	FOXP1	21	3	42869050	71060348	Intron of TMPRSS2(-):995bp after exon 2	Intron of FOXP1(-):4Kb after exon 8	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - FOXP1 (NM_001244814) rearrangement: t(3;21)(p13;q22.3)(chr3:g.71060348::chr21:g.:42869050)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS2:FOXP1}	0	NA	0	61	10	61
P-0022437-T01-IM6	SOMATIC	TMPRSS2	SALRNA3	21	15	42874076	70805740	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 102Kb before SALRNA3(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q23;q22.3)(chr15:g.70805740::chr21:g.42874076)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	95	10	94
P-0001281-T02-IM6	SOMATIC	SEC61G	EGFR	7	7	54797062	55268641	IGR: 23Kb before SEC61G(-)	Intron of EGFR(+):239bp before exon 25	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: chr7:g.54797062_c.2947-240dup	PRECISE		MANUAL_OK	5to3	-	471579	NA	0	6	10	13
P-0022607-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611212	61612874	Intron of RET(+):819bp before exon 12	Intron of CCDC6(-):414bp before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12 - 20): c.304-414:CCDC6_c.2137-820:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18001662	NA	0	22	10	24
P-0022778-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42878796	140483147	Intron of TMPRSS2(-):1Kb after exon 1	Intron of BRAF(-):190bp before exon 10	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - BRAF (NM_004333) Rearrangement : t(7;21)(q34;q22.3)(chr7:g.140483147::chr21:g.42878796)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:BRAF}	0	NA	0	51	10	56
P-0022611-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859154	42873629	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3513:TMPRSS2_c.18+11133:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3014475	NA	0	67	10	69
P-0022788-T01-IM6	SOMATIC	FYN	SEC24B-AS1	6	4	112025245	110248314	Exon 4 of FYN(-)	IGR: 103Kb before SEC24B-AS1(-)	GRCh37	TRANSLOCATION	FYN (NM_153047) rearrangement: t(4;6)(q25;q21)(chr4:g.110248314::chr6:g.112025245)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	8	0	7
P-0022592-T01-IM6	SOMATIC	NF2	NF2	22	22	30067964	30084466	Intron of NF2(+):27bp after exon 11	Intron of NF2(+):6Kb before exon 16	GRCh37	DELETION	NF2 (NM_000268) Rearrangement : c.1122+27_c.1738-6275del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	16502	NA	0	10	10	10
P-0022592-T01-IM6	SOMATIC	NOTCH1	CCDC183	9	9	139412513	139698797	Intron of NOTCH1(-):75bp after exon 7	Intron of CCDC183(+):156bp before exon 7	GRCh37	INVERSION	NOTCH1 (NM_017617) - KIAA1984(NM_001039374) Rearrangement : c.1255+76:NOTCH1_c.667-157:KIAA1984inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NOTCH1:CCDC183}	286284	NA	0	29	10	31
P-0022566-T01-IM6	SOMATIC	PDPK1	CPPED1	16	16	2588141	12881579	Intron of PDPK1(+):4bp after exon 1	Intron of CPPED1(-):6Kb before exon 2	GRCh37	DELETION	PDPK1 (NM_002613) rearrangement: c.24+4:PDPK1_chr16:g.12881579del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10293438	NA	0	11	10	12
P-0022566-T01-IM6	SOMATIC	GRIN2A	TMC7	16	16	10032373	18959069	Exon 3 of GRIN2A(-)	IGR: 36Kb before TMC7(+)	GRCh37	INVERSION	GRIN2A (NM_001134407) rearrangement: chr16:g.18959069_c.450:GRIN2inv	PRECISE		MANUAL_OK	5to5	-	8926696	NA	0	6	10	7
P-0022660-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30383935	30686249	IGR: 264Kb before TGFBR2(+)	Exon 3 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: chr3:g.30383935_c.180del	PRECISE		MANUAL_OK	3to5	-	302314	NA	0	31	10	72
P-0022642-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611768	61626673	Intron of RET(+):263bp before exon 12	Intron of CCDC6(-):14Kb before exon 2	GRCh37	INVERSION	CCDC6(NM_005436) - RET(NM_020975) Fusion (CCDC6 exon1 fused to RET exon12) : c.304-14214:CCDC6_c.2137-273:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18014905	NA	0	18	10	27
P-0022569-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11871582	12009114	Intron of ETV6(+):34Kb before exon 2	Intron of ETV6(+):3Kb after exon 4	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.34-33802_c.463+2619inv	IMPPRECISE		MANUAL_OK	5to5	-	137532	NA	0	30	0	44
P-0022569-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737264	1808705	Intron of TACC3(+):193bp before exon 8	Intron of FGFR3(+):44bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused with TACC3 exons 8-16. This includes the kinase domain of FGFR3.): c.2274+44:FGFR3_c.1645-194:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71441	NA	0	4	10	4
P-0022716-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21548109	21562357	3-UTR of LATS2(-):899bp after coding stop	Exon 4 of LATS2(-)	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.1562_c.*900del	PRECISE		MANUAL_OK	3to5	-	14248	NA	0	12	10	14
P-0021630-T02-IM6	SOMATIC	SMAD3	MTHFS	15	15	67479883	80014264	Intron of SMAD3(+):36bp after exon 8	IGR: 122Kb before MTHFS(-)	GRCh37	INVERSION	SMAD3 (NM_005902) rearrangement: c.1154+36:SMAD3_chr15:g.80014264inv	PRECISE		MANUAL_OK	3to3	-	12534381	NA	0	10	10	10
P-0022798-T01-IM6	SOMATIC	KDM5A	OSBPL8	12	12	472234	76775852	Exon 5 of KDM5A(-)	Intron of OSBPL8(-):2Kb after exon 15	GRCh37	DUPLICATION	KDM5A (NM_001042603) - OSBPL8 (NM_020841) Rearrangement : c.567:KDM5A_c.1630+2182:OSBPL8dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KDM5A:OSBPL8}	76303618	NA	0	18	10	19
P-0022798-T01-IM6	SOMATIC	THUMPD3	PPARG	3	3	9389622	12458249	IGR: 15Kb before THUMPD3(+)	Exon 6 of PPARG(+)	GRCh37	INVERSION	PPARG (NM_015869) Rearrangement : chr3:g.9389622_c.866:PPARGinv	PRECISE		MANUAL_OK	3to3	-	3068627	NA	0	14	10	13
P-0022724-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55087636	55221886	Intron of EGFR(+):578bp after exon 1	Intron of EGFR(+):41bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+578_c.889+41del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	134250	NA	0	44	10	52
P-0022813-T01-IM6	SOMATIC	ARSA	DOT1L	22	19	51076614	2228505	IGR: 15Kb before ARSA(-)	Intron of DOT1L(+):1Kb before exon 28	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(19;22)(p13.3;q13.33)(chr19:g.2228505::chr22:g.51076614)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	6
P-0022818-T01-IM6	SOMATIC	RET	NCOA4	10	10	43611746	51585221	Intron of RET(+):285bp before exon 12	Exon 8 of NCOA4(+)	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-8 fused with RET exons 12-20): c.618+42:NCOA4_c.2137-860:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOA4:RET}	7973475	NA	0	81	10	121
P-0022723-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21969865	21971004	3-UTR of CDKN2Ap14ARF(-):1Kb after coding stop	Exon 2 of CDKN2Ap14ARF(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195): c.397_c.*101+1036del	PRECISE		MANUAL_OK	3to3	-	1139	NA	NA	37	10	NA
P-0022723-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21969865	21971004	Intron of CDKN2Ap16INK4A(-):1Kb before exon 2	Exon 2 of CDKN2Ap16INK4A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077): c.354_c.457+1036del	PRECISE		MANUAL_OK	3to3	-	1139	NA	NA	37	10	NA
P-0022767-T01-IM6	SOMATIC	XPO1	EXOC6B	2	2	61715910	72977233	Intron of XPO1(-):4bp before exon 18	Intron of EXOC6B(-):9Kb before exon 2	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: chr2:g.72977233_c.2023-4:XPO1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EXOC6B:XPO1}	11261323	NA	0	4	7	4
P-0022866-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312731	43611871	Intron of KIF5B(-):767bp before exon 16	Intron of RET(+):160bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) Fusion (KIF5B exons 1-15 fused to RET exons 12-20):  c.1726-767:KIF5B_c.2137-161:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11299140	NA	0	52	10	72
P-0022750-T01-IM6	SOMATIC	PSMG2	TP53	18	17	12724031	7579703	Intron of PSMG2(+):466bp before exon 6	Exon 3 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) - PSMG2 (NM_020232) rearrangement: t(17;18)(p13.1;p11.21)(chr17:g.7579703::chr18:g.12724031)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TP53:PSMG2}	0	NA	0	7	10	10
P-0018186-T02-IM6	SOMATIC	EXOC3L2	ERCC2	19	19	45709069	45856061	IGR: 7Kb before EXOC3L2(-)	Exon 20 of ERCC2(-)	GRCh37	DELETION	ERCC2 (NM_000400) rearrangement: c.1845:ERCC2_chr19:g.45709069del	PRECISE		MANUAL_OK	3to5	-	146992	NA	0	5	10	5
P-0022863-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89685479	89696485	Intron of PTEN(+):165bp after exon 3	Intron of PTEN(+):3Kb after exon 5	GRCh37	DELETION	PTEN (NM_000314) Rearrangement: c.209+165_c.492+3477del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	11006	NA	0	12	9	9
P-0022865-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39817473	42873095	Exon 2 of ERG(-)	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.56-2979:TMPRSS2_c.90:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3055622	NA	0	38	10	42
P-0022691-T01-IM6	SOMATIC	RIPK2	NBN	8	8	90818092	90949145	IGR: 48Kb before RIPK2(+)	Intron of NBN(-):108bp after exon 15	GRCh37	DELETION	NBN (NM_002485) rearrangement: chr8:g.90818092_c.2234+109:NBNdel	PRECISE		MANUAL_OK	3to5	-	131053	NA	0	4	10	4
P-0022694-T01-IM6	SOMATIC	STK11	STK11	19	19	1207071	1209124	Exon 1 of STK11(+)	Intron of STK11(+):2Kb after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.159_c.290+1922del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2053	NA	0	22	10	28
P-0022864-T01-IM6	SOMATIC	TOX	BAP1	8	3	60352046	52441973	IGR: 634Kb before TOX(-)	Exon 5 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) Rearrangement :  t(3;8)(p21.31;q12.1)(chr3:g.52441973::chr8:g.60352046)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	10	27
P-0022820-T01-IM6	SOMATIC	DGAT1	RECQL4	8	8	145550735	145740553	Promoter of DGAT1(-):12Kb from tx start	Exon 8 of RECQL4(-)	GRCh37	DUPLICATION	DGAT1 (NM_012079) - RECQL4 (NM_004260) rearrangement: c.-436:DGAT1_c.1464:RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DGAT1:RECQL4}	189818	NA	0	14	10	14
P-0022700-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878361	42869415	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):630bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.126+631:TMPRSS2_c.40-60817:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991054	NA	0	57	10	60
P-0022684-T01-IM6	SOMATIC	LINC01427	ASXL1	20	20	22306929	31024694	IGR: 46Kb before LINC01427(-)	Exon 12 of ASXL1(+)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.4179:ASXL1_chr20:g.22306929del	PRECISE		MANUAL_OK	3to5	-	8717765	NA	0	6	10	6
P-0022684-T01-IM6	SOMATIC	NOTCH4	LSG1	6	3	32185929	194360584	Intron of NOTCH4(-):44bp before exon 9	Promoter of LSG1(-):932bp from tx start	GRCh37	TRANSLOCATION	LSG1 (NM_018385) - NOTCH4 (NM_004557) rearrangement: t(3;6)(q29;p21.33)(chr3:g.194360584::chr6:g.32185929)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {LSG1:NOTCH4}	0	NA	0	13	10	13
P-0022706-T01-IM6	SOMATIC	FGF16	ATRX	X	X	76625205	76776202	IGR: 84Kb before FGF16(+)	Intron of ATRX(-):63bp after exon 34	GRCh37	DELETION	ATRX (NM_000489) rearrangement: chrX:g.76625205_c.7200+64del	PRECISE		MANUAL_OK	3to5	-	150997	NA	0	86	10	92
P-0015194-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55186259	55222837	Intron of EGFR(+):24Kb before exon 2	Intron of EGFR(+):685bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-23720_c.890-686del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	36578	NA	0	25	10	29
P-0022672-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89621217	89624551	Promoter of PTEN(+):2Kb from tx start	Intron of PTEN(+):246bp after exon 1	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.-3010_c.79+246inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3334	NA	0	3	7	4
P-0022688-T01-IM6	SOMATIC	MGA	LRRC49	15	15	42058903	71198189	Exon 24 of MGA(+)	Intron of LRRC49(+):1Kb after exon 6	GRCh37	DUPLICATION	LRRC49 (NM_001199017) - MGA (NM_001164273) rearrangement: c.515+1095:LRRC49_c.8623:MGAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LRRC49:MGA}	29139286	NA	0	4	10	4
P-0022690-T01-IM6	SOMATIC	SMARCA4	LOC101927798	19	8	11135116	134799079	Intron of SMARCA4(+):2bp after exon 21	IGR: 11Kb before LOC101927798(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(8;19)(q24.22;p13.2)(chr8:g.134799079::chr19:g.11135116)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	22	10	21
P-0001971-T02-IM6	SOMATIC	ARID1A	THEMIS2	1	1	27099883	28204656	Exon 15 of ARID1A(+)	Intron of THEMIS2(+):1Kb after exon 2	GRCh37	DELETION	ARID1A (NM_006015) - THEMIS2(NM_004848) Rearrangement : c.3762:ARID1A_c.235+1417:THEMIS2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:THEMIS2}	1104773	NA	0	14	10	14
P-0001971-T02-IM6	SOMATIC	NF1	NF1	17	17	29643671	29663329	Intron of NF1(+):9Kb before exon 37	Intron of NF1(+):21bp before exon 41	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement: c.4836-9167_c.6007-22del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	19658	NA	0	22	10	22
P-0022896-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36259219	36313194	Exon 4 of RUNX1(-)	Intron of RUNX1(-):48Kb before exon 3	GRCh37	DELETION	RUNX1 (NM_001754) Rearrangement :  c.59-4793_c.272del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	53975	NA	0	79	10	87
P-0022896-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101906990	101908805	Intron of TGFBR1(+):23bp before exon 6	Exon 7 of TGFBR1(+)	GRCh37	DELETION	TGFBR1 (NM_004612) Rearrangement : c.974-24_c.1169del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1815	NA	0	35	10	37
P-0022982-T01-IM6	SOMATIC	NF1	NF1	17	17	29662303	29663358	Intron of NF1(+):254bp after exon 40	Exon 41 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement :  c.6006+254_c.6014del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1055	NA	0	12	10	12
P-0005264-T02-IM6	SOMATIC	EIF4A2	RFC4	3	3	186503730	186523624	Exon 5 of EIF4A2(+)	5-UTR of RFC4(-):16Kb before coding start	GRCh37	INVERSION	EIF4A2 (NM_001967) - RFC4 (NM_002916) rearrangement: c.407:EIF4A2_c.-12+455:RFC4inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EIF4A2:RFC4}	19894	NA	0	32	0	34
P-0006767-T02-IM6	SOMATIC	RXRA	UBAP2L	9	1	137308782	154242365	Intron of RXRA(+):221bp before exon 5	Intron of UBAP2L(+):310bp before exon 27	GRCh37	TRANSLOCATION	UBAP2L (NM_014847) - RXRA (NM_002957) rearrangement: t(1;9)(q21.3;q34.2)(chr1:g.154242365::chr9:g.137308782)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {UBAP2L:RXRA}	0	NA	0	12	10	12
P-0022933-T01-IM6	SOMATIC	ESR1	PARK2	6	6	152419863	162361306	Intron of ESR1(+):3bp before exon 9	Intron of PARK2(-):33Kb after exon 6	GRCh37	INVERSION	ESR1 (NM_001122740) - PARK2 (NM_004562) rearrangement: c.1554-4:ESR1_c.734+33028:PARK2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ESR1:PARK2}	9941443	NA	0	7	10	7
P-0022926-T01-IM6	SOMATIC	ALK	EML4	2	2	29446558	42492854	Intron of ALK(-):164bp before exon 20	Intron of EML4(+):983bp after exon 5	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.493+983:EML4_c.3173-164:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046296	NA	0	15	10	15
P-0022968-T01-IM6	SOMATIC	C12orf42	RPS6KA4	12	11	103764727	64136052	Intron of C12orf42(-):2Kb before exon 4	Exon 11 of RPS6KA4(+)	GRCh37	TRANSLOCATION	RPS6KA4 (NM_003942) Rearrangement : t(11;12)(q34;q12)(chr11:g.64136052::chr12:g.103764727)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	287	10	374
P-0022938-T01-IM6	SOMATIC	NCOA6	NOTCH1	20	9	33384986	139413077	5-UTR of NCOA6(-):82Kb before coding start	Exon 6 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - NCOA6 (NM_014071) rearrangement: t(9;20)(q34.3;q11.22)(chr9:g.139413077::chr20:g.33384986)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:NCOA6}	0	NA	0	14	10	24
P-0022938-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55090112	55222123	Intron of EGFR(+):3Kb after exon 1	Intron of EGFR(+):278bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+3054_c.889+278del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	132011	NA	0	71	10	78
P-0022938-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269785	55271251	Intron of EGFR(+):310bp after exon 26	Intron of EGFR(+):933bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3162+310_c.3271+933del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1466	NA	0	28	10	29
P-0023103-T01-IM6	SOMATIC	NOL4	FGFR2	18	10	31518701	123241921	Intron of NOL4(-):4Kb after exon 9	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - NOL4 (NM_003787) fusion (FGFR2 exons 1-17 fused to NOL4 exons  10-11): t(10;18)(q26.13;q12.1)(chr10:g.123241921::chr18:g.31518701)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:NOL4}	0	NA	0	9	10	27
P-0023031-T01-IM6	SOMATIC	RB1	LINC01358	13	1	48916708	59514813	Intron of RB1(+):26bp before exon 3	5-UTR of LINC01358(+):39Kb before coding start	GRCh37	TRANSLOCATION	RB1 (NM_000321) Rearrangement : t(1;13)(p32.2;p21.2)(chr1:g.59514813::chr13:g.48916708)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	53	10	61
P-0023023-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187500064	187524752	IGR: 9Kb before FAT1(-)	Exon 19 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.10928_chr4:g.187500064del	PRECISE		MANUAL_OK	3to5	-	24688	NA	0	8	10	14
P-0023007-T01-IM6	SOMATIC	LRIG3	ROS1	12	6	59270940	117645256	Intron of LRIG3(-):241bp after exon 15	Intron of ROS1(-):238bp after exon 34	GRCh37	TRANSLOCATION	LRIG3 (NM_153377) - ROS1 (NM_002944) fusion: (LRIG3 exons 1-15 fused to ROS1 exons 35 - 43): t(6;12)(q22.1;q14.1)(chr6:g.117645256::chr12:g.59270940)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {LRIG3:ROS1}	0	NA	0	16	0	14
P-0023066-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37627045	37631169	Intron of CDK12(+):86bp before exon 2	Intron of CDK12(+):3Kb after exon 2	GRCh37	INVERSION	CDK12 (NM_016507)  rearrangement: c.1931+3153_c.1047-87inv	PRECISE		MANUAL_OK	5to5	-	4124	NA	0	3	8	5
P-0023159-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68830580	68845627	Intron of CDH1(+):5Kb before exon 3	Exon 7 of CDH1(+)	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement : c.164-4993_c.873del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15047	NA	0	21	10	21
P-0022953-T01-IM6	SOMATIC	TMPRSS2	CERS6	21	2	42873665	169560626	Intron of TMPRSS2(-):4Kb before exon 2	Intron of CERS6(+):9Kb after exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - CERS6 (NM_203463) rearrangement: t(2;21)(q24.3;q22.3)(chr2:g.169560626::chr21:g.42873665)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TMPRSS2:CERS6}	0	NA	0	14	10	33
P-0023004-T02-IM6	SOMATIC	ETV6	HTR1B	12	6	12013128	78220086	Intron of ETV6(+):7Kb after exon 4	IGR: 48Kb before HTR1B(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(6;12)(q14.1;p13.2)(chr6:g.78220086::chr12:g.12013128)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	6	0	8
P-0002995-T03-IM6	SOMATIC	PREX2	GDAP1	8	8	68982303	75336721	Intron of PREX2(+):184bp after exon 13	IGR: 74Kb before GDAP1(+)	GRCh37	DELETION	PREX2 (NM_024870) Rearrangement : c.1493+184:PREX2_chr8:g.75336721	PRECISE		MANUAL_OK	3to5	-	6354418	NA	0	8	6	7
P-0023000-T01-IM6	SOMATIC	LINC00954	ALK	2	2	19979335	29448128	IGR: 89Kb before LINC00954(+)	Intron of ALK(-):198bp after exon 19	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: chr2:g.19979335_c.3172+199:ALKdup	PRECISE		MANUAL_OK	5to3	-	9468793	NA	0	32	10	33
P-0023125-T01-IM6	SOMATIC	TNPO1	MSH3	5	5	72193849	79950556	Intron of TNPO1(+):871bp after exon 20	Exon 1 of MSH3(+)	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: chr5:g.72193849_c.10:MSH3inv	PRECISE		MANUAL_OK	5to5	-	7756707	NA	0	43	10	66
P-0017298-T02-IM6	SOMATIC	TSNARE1	RECQL4	8	8	143348789	145740822	Intron of TSNARE1(-):7Kb after exon 12	Exon 7 of RECQL4(-)	GRCh37	DUPLICATION	TSNARE1 (NM_145003) - RECQL4 (NM_004260) rearrangement: c.1446+7353:TSNARE1_c.1278:RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSNARE1:RECQL4}	2392033	NA	0	30	10	30
P-0023067-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866272	42877648	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.55+2229:TMPRSS2_c.18+4015:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011376	NA	0	5	0	7
P-0023043-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189438	55221883	Intron of EGFR(+):21Kb before exon 2	Intron of EGFR(+):38bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-20541_c.889+38del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	32445	NA	0	135	10	147
P-0023043-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268179	55864965	Intron of EGFR(+):73bp after exon 24	Intron of SEPT14(-):1Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) Fusion (EGFR exons 1-24 fused with SEPT14 exon 10) :  c.2946+73:EGFR_c.1120-1180:SEPT14	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	596786	NA	0	6	0	5
P-0023057-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	19	10	23
P-0023117-T01-IM6	SOMATIC	ATM	NCAM1	11	11	108121628	112865400	Exon 10 of ATM(+)	Intron of NCAM1(+):33Kb after exon 2	GRCh37	DELETION	ATM (NM_000051) - NCAM1 (NM_181351) rearrangement: c.1436:ATM_c.53+33014:NCAM1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ATM:NCAM1}	4743772	NA	0	35	10	38
P-0121460-T02-IM6	SOMATIC	CIC	CIC	19	19	42790969	42798856	Exon 2 of CIC(+)	Exon 19 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) rearrangement: c.114_c.4428dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7887	NA	0	79	10	88
P-0121460-T02-IM6	SOMATIC	CIC	CIC	19	19	42790970	42798542	Exon 2 of CIC(+)	Intron of CIC(+):86bp after exon 18	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.115_c.4327+86del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7572	NA	0	67	0	83
P-0023059-T01-IM6	SOMATIC	SLC16A7	KMT2C	12	7	60040921	151846068	5-UTR of SLC16A7(+):58Kb before coding start	Exon 52 of KMT2C(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(7;12)(q36.1;q14.1)(chr7:g.151846068::chr12:g.60040921)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SLC16A7:KMT2C}	0	NA	0	18	10	17
P-0023059-T01-IM6	SOMATIC	AKT2	PRR5L	19	11	40761254	36316873	Intron of AKT2(-):78bp before exon 4	Promoter of PRR5L(+):851bp from tx start	GRCh37	TRANSLOCATION	AKT2 (NM_001626) rearrangement: t(11;19)(p13;q13.2)(chr11:g.36316873::chr19:g.40761254)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PRR5L:AKT2}	0	NA	0	22	10	22
P-0023014-T01-IM6	SOMATIC	SHOC2	SHOC2	10	10	112760221	112761112	Exon 4 of SHOC2(+)	Intron of SHOC2(+):809bp after exon 4	GRCh37	INVERSION	SHOC2 (NM_007373) rearrangement: c.890_c.972+809inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	891	NA	0	66	10	66
P-0023014-T01-IM6	SOMATIC	SYNGR3	TSC2	16	16	2040648	2112559	Intron of SYNGR3(+):446bp after exon 1	Exon 13 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) - SYNGR3 (NM_004209) rearrangement: c.1319:TSC2_c.99+446:SYNGR3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSC2:SYNGR3}	71911	NA	0	3	8	3
P-0012214-T02-IM6	SOMATIC	DNMT1	KEAP1	19	19	10297742	10599856	Intron of DNMT1(-):5Kb before exon 2	Intron of KEAP1(-):11bp after exon 5	GRCh37	INVERSION	DNMT1 (NM_001379) - KEAP1 (NM_203500) rearrangement: c.81-4989:DNMT1_c.1708+12:KEAP1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	302114	NA	0	90	10	125
P-0012214-T02-IM6	SOMATIC	SF3B1	SF3B1	2	2	198258771	198260918	Intron of SF3B1(-):859bp before exon 24	Exon 23 of SF3B1(-)	GRCh37	DELETION	SF3B1 (NM_012433) rearrangement: c.3540-859_c.3401del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2147	NA	0	31	10	33
P-0022996-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68758565	68959757	Intron of RAD51B(+):35bp before exon 8	Intron of RAD51B(+):25Kb after exon 10	GRCh37	DUPLICATION	RAD51B (NM_133509) rearrangement: c.757-36_c.1036+24790dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	201192	NA	0	8	0	8
P-0022996-T01-IM6	SOMATIC	WHSC1L1	FGFR1	8	8	38173261	38274677	Intron of WHSC1L1(-):168bp after exon 10	Intron of FGFR1(-):146bp after exon 13	GRCh37	DUPLICATION	WHSC1L1 (NM_023034) - FGFR1 (NM_001174067) rearrangement: c.1986+169:WHSC1L1_c.1756+147:FGFR1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {WHSC1L1:FGFR1}	101416	NA	0	15	10	15
P-0023049-T01-IM6	SOMATIC	STAT3	FAM134C	17	17	40481692	40749768	Intron of STAT3(-):27bp before exon 13	Intron of FAM134C(-):6Kb before exon 2	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.1140-27:STAT3_chr17:g.40749768inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	268076	NA	0	26	10	39
P-0023039-T01-IM6	SOMATIC	PKM	JAK1	15	1	72499346	65323406	Intron of PKM(-):121bp after exon 7	Exon 10 of JAK1(-)	GRCh37	TRANSLOCATION	JAK1 (NM_002227) - PKM (NM_001206796) rearrangement: t(1;15)(p31.3;q23)(chr1:g.65323406::chr15:g.72499346)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {JAK1:PKM}	0	NA	0	32	10	32
P-0023040-T01-IM6	SOMATIC	NF1	NF1	17	17	29533496	29563026	Intron of NF1(+):107bp after exon 12	Exon 29 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.1392+107_c.3961inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	29530	NA	0	102	10	99
P-0023084-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30105519	30162257	Exon 7 of PRKD1(-)	Intron of PRKD1(-):27Kb before exon 3	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.404-26843_c.1167del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	56738	NA	0	9	10	9
P-0011038-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36211075	36212186	Exon 3 of KMT2B(+)	Exon 3 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.826_c.1937inv	PRECISE		MANUAL_OK	5to5	-	1111	NA	0	3	10	3
P-0023093-T01-IM6	SOMATIC	MAP2K4	MAP3K14	17	17	12044556	43355542	Exon 11 of MAP2K4(+)	Intron of MAP3K14(-):4Kb before exon 7	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.1179:MAP2K4_chr17:g.43355542del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	31310986	NA	0	31	10	33
P-0022856-T02-IM6	SOMATIC	PTPRD	PTPRD	9	9	8341131	8505685	Exon 41 of PTPRD(-)	Intron of PTPRD(-):1Kb before exon 23	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.1678-1280_c.5085del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	164554	NA	0	7	8	7
P-0023322-T01-IM6	SOMATIC	LINC00900	KMT2A	11	11	115596492	118307629	IGR: 30Kb before LINC00900(-)	Exon 1 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: chr11:g.115596492_c.402del	PRECISE		MANUAL_OK	3to5	-	2711137	NA	0	68	10	74
P-0023216-T01-IM6	SOMATIC	SUZ12	SUZ12	17	17	30263712	30264384	Promoter of SUZ12(+):331bp from tx start	Exon 1 of SUZ12(+)	GRCh37	DELETION	SUZ12 (NM_015355) rearrangement: chr17:g.30263712_c.119:SUZ12del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	672	NA	0	12	0	17
P-0023204-T01-IM6	SOMATIC	TNFAIP3	LOC388942	6	2	138197359	41756757	Intron of TNFAIP3(+):56bp after exon 5	IGR: 348Kb before LOC388942(+)	GRCh37	TRANSLOCATION	TNFAIP3 (NM_006290) rearrangement: t(2;6)(p22.1;q23.3)(chr2:g.41756757::chr6:g.138197359)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0023194-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8099532	8100798	Intron of GATA3(+):735bp before exon 3	Exon 3 of GATA3(+)	GRCh37	DELETION	GATA3 (NM_002051) rearrangement: c.242-736_c.772del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1266	NA	0	11	10	11
P-0023194-T01-IM6	SOMATIC	TP53	TP53	17	17	7577593	7578570	Exon 7 of TP53(-)	Intron of TP53(-):16bp before exon 5	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.376-16_c.688del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	977	NA	0	60	10	67
P-0023297-T01-IM6	SOMATIC	FAM135A	PARK2	6	6	71194723	162683733	Intron of FAM135A(+):3Kb after exon 8	Exon 3 of PARK2(-)	GRCh37	INVERSION	PARK2 (NM_004562) - FAM135A (NM_001162529) rearrangement: c.236:PARK2_c.823+2866:FAM135Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PARK2:FAM135A}	91489010	NA	0	32	10	46
P-0008938-T04-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72828919	73073574	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-):253Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.7662_chr16:g.73073574del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	244655	NA	0	6	10	6
P-0008938-T04-IM6	SOMATIC	PBRM1	PBRM1	3	3	52678645	52693930	Intron of PBRM1(-):74bp after exon 9	Intron of PBRM1(-):2Kb before exon 6	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.899+75_c.529-1599dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	15285	NA	0	5	0	5
P-0023211-T01-IM6	SOMATIC	EP300	FBLN1	22	22	41546018	45878564	Exon 14 of EP300(+)	IGR: 20Kb before FBLN1(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.2633_chr22:g.45878564inv	PRECISE		MANUAL_OK	3to3	-	4332546	NA	0	4	6	3
P-0023186-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486828	57504005	Intron of NAB2(+):17bp before exon 5	3-UTR of STAT6(-):1Kb after coding stop	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1144-18:NAB2_c.-22+907:STAT6inv	PRECISE		MANUAL_OK	3to3	-	17177	NA	0	91	10	91
P-0023321-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40496534	40500432	Intron of STAT3(-):1Kb after exon 4	Exon 2 of STAT3(-)	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.372+1043_c.103del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3898	NA	0	40	10	42
P-0023321-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178096647	178129731	Exon 5 of NFE2L2(-)	5-UTR of NFE2L2(-):34Kb before coding start	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.684_c.-427del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	33084	NA	0	14	10	15
P-0022004-T02-IM6	SOMATIC	SRGAP2	IKBKE	1	1	206626708	206664172	Exon 17 of SRGAP2(+)	Exon 17 of IKBKE(+)	GRCh37	DELETION	SRGAP2 (NM_015326) - IKBKE (NM_014002) rearrangement: c.2085:SRGAP2_c.1714:IKBKEdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SRGAP2:IKBKE}	37464	NA	0	8	10	10
P-0023197-T01-IM6	SOMATIC	KMT2C	ACTR3B	7	7	151853092	152760077	Exon 46 of KMT2C(-)	IGR: 303Kb before ACTR3B(+)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11863:KMT2C_chr7:g.152760077del	PRECISE		MANUAL_OK	3to5	-	906985	NA	0	5	7	5
P-0009821-T02-IM6	SOMATIC	PTPRS	SYNPO2L	19	10	5239001	75417927	Exon 13 of PTPRS(-)	Promoter of SYNPO2L(-):13Kb from tx start	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(10;19)(q22.2;p13.3)(chr10:g.75417927::chr19:g.5239001)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PTPRS:SYNPO2L}	0	NA	0	5	10	28
P-0009821-T02-IM6	SOMATIC	ADAM29	FAT1	4	4	175870481	187630481	5-UTR of ADAM29(+):26Kb before coding start	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: chr4:g.175870481_c.501del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	11760000	NA	0	40	10	40
P-0022439-T02-IM6	SOMATIC	DYM	PLCG2	18	16	46777426	81925157	Intron of DYM(-):6Kb after exon 13	Exon 11 of PLCG2(+)	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) Rearrangement : t(16,18)(q23.2,q21.1)(chr16:g.81925157::chr18:g.46777426)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	25	10	25
P-0023089-T02-IM6	SOMATIC	DNMT1	DNMT1	19	19	10236646	10305398	IGR: 7Kb before DNMT1(-)	Intron of DNMT1(-):97bp after exon 1	GRCh37	DELETION	DNMT1 (NM_001379) Rearrangement : chr19:g.10236646_c.80+98:DNMT1del	PRECISE		MANUAL_OK	3to5	-	68752	NA	0	8	10	10
P-0023249-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845757	42872436	Intron of TMPRSS2(-):334bp before exon 9	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement : c.56-2320_c.839-334inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	26679	NA	0	18	10	22
P-0023257-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88662190	12014998	Intron of NTRK3(-):7Kb after exon 13	Intron of ETV6(+):7Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1 to 4 fused to NTRK3 exons 14 to 20) : t(12;15)(p13.2;q25.3)(chr12:g.12014998::chr15:g.88662190)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	23	10	23
P-0023261-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1740102	1808927	Intron of TACC3(+):673bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to exons 11-16 of TACC3): c.2359:FGFR3_c.1941+673:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68825	NA	0	14	10	14
P-0023270-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880406	42874061	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with exon4) : c.56-3945:TMPRSS2_c.40-62862:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993655	NA	0	6	10	6
P-0013172-T02-IM6	SOMATIC	INPPL1	ACER3	11	11	71945445	76694825	Intron of INPPL1(+):7bp after exon 20	Intron of ACER3(+):2Kb before exon 4	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.2326+7:INPPL1_chr11:g.76694825inv	PRECISE		MANUAL_OK	5to5	-	4749380	NA	0	49	10	70
P-0023281-T01-IM6	SOMATIC	KDM5A	HLA-E	12	6	438110	30437747	Exon 14 of KDM5A(-)	IGR: 19Kb before HLA-E(+)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(6;12)(p22.1;p13.33)(chr6:g.30437747::chr12:g.438110)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	42	10	48
P-0023287-T01-IM6	SOMATIC	RPTOR	PTP4A2	17	1	78854227	32370243	Exon 14 of RPTOR(+)	Promoter of PTP4A2(-):2Kb from tx start	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(1;17)(p35.2;q25.3)(chr1:g.32370243::chr17:g.78854227)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	13
P-0023310-T01-IM6	SOMATIC	RASA1	KIAA0825	5	5	86685302	93855388	Exon 24 of RASA1(+)	Intron of KIAA0825(-):564bp after exon 5	GRCh37	INVERSION	RASA1 (NM_002890) - KIAA0825 (NM_001145678) rearrangement: c.3018:RASA1_c.970+565:KIAA0825inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RASA1:KIAA0825}	7170086	NA	0	27	10	27
P-0003223-T04-IM6	SOMATIC	RET	RET	10	10	43608871	43610429	Intron of RET(+):132bp before exon 10	Intron of RET(+):245bp after exon 11	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.1760-133_c.2136+245inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1558	NA	0	2	9	2
P-0023366-T01-IM6	SOMATIC	HGF	LAMB4	7	7	81334770	107736523	Exon 17 of HGF(-)	Intron of LAMB4(-):741bp before exon 12	GRCh37	DUPLICATION	HGF (NM_000601) - LAMB4 (NM_007356) rearrangement: c.1946:HGF_c.1361-741:LAMB4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {HGF:LAMB4}	26401753	NA	0	3	10	3
P-0023368-T01-IM6	SOMATIC	ALK	EML4	2	2	29446713	42498875	Intron of ALK(-):319bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29 including the kinase domain) : c.667+7004:EML4_c.3173-319:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052162	NA	0	23	10	32
P-0023371-T01-IM6	SOMATIC	ITM2B	RB1	13	13	48785947	48923160	IGR: 21Kb before ITM2B(+)	Intron of RB1(+):1bp after exon 6	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: chr13:g.48785947_c.607+1:RB1inv	PRECISE		MANUAL_OK	3to3	-	137213	NA	0	32	10	32
P-0012132-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867415	42868521	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.126+1525:TMPRSS2_c.18+2872:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001106	NA	0	75	10	78
P-0012132-T02-IM6	SOMATIC	C4orf45	FUBP1	4	1	159924443	78420821	Intron of C4orf45(-):30Kb before exon 2	Intron of FUBP1(-):118bp after exon 18	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) rearrangement: t(1;4)(p31.1;q32.1)(chr1:g.78420821::chr4:g.159924443)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FUBP1:C4orf45}	0	NA	0	24	10	24
P-0023382-T01-IM6	SOMATIC	COQ5	SMYD3	12	1	120960344	246490341	Intron of COQ5(-):178bp before exon 2	Intron of SMYD3(-):161bp after exon 5	GRCh37	TRANSLOCATION	SMYD3 (NM_001167740) rearrangement: t(1;12)(q44;q24.31)(chr1:g.246490341::chr12:g.120960344)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	8	8
P-0023388-T01-IM6	SOMATIC	CYLD	TACC1	16	8	50826532	38590620	Exon 15 of CYLD(+)	5-UTR of TACC1(+):87Kb before coding start	GRCh37	TRANSLOCATION	CYLD (NM_001042355) rearrangement: t(8;16)(p11.22;q12.1)(chr8:g.38590620::chr16:g.50826532)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CYLD:TACC1}	0	NA	0	101	10	106
P-0023416-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10601091	10602518	Intron of KEAP1(-):562bp before exon 4	Exon 3 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1326-562_c.1060del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1427	NA	0	2	9	2
P-0023471-T01-IM6	SOMATIC	NOTCH3	POU1F1	19	3	15271620	87561351	Exon 33 of NOTCH3(-)	IGR: 253Kb before POU1F1(-)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(3;19)(p11.2;p13.12)(chr3:g.87561351::chr19:g.15271620)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	21	10	27
P-0023472-T01-IM6	SOMATIC	FLT1	UBL3	13	13	28973111	30322059	Intron of FLT1(-):2Kb before exon 12	IGR: 16Kb before UBL3(-)	GRCh37	INVERSION	FLT1 (NM_002019) rearrangement: c.1552-1906_chr13:g.30322059inv	PRECISE		MANUAL_OK	5to5	-	1348948	NA	0	6	10	8
P-0023472-T01-IM6	SOMATIC	DNAJB1	URI1	19	19	14629128	30411039	Exon 1 of DNAJB1(-)	IGR: 4Kb before URI1(+)	GRCh37	INVERSION	DNAJB1 (NM_006145) rearrangement: c.34_chr19:g.30411039inv	PRECISE		MANUAL_OK	3to3	-	15781911	NA	0	8	10	31
P-0015921-T03-IM6	SOMATIC	ALK	EML4	2	2	29446809	42492387	Intron of ALK(-):415bp before exon 20	Intron of EML4(+):516bp after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused with ALK exons 20-29): c.667+516:EML4_c.3173-415:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13045578	NA	0	41	10	41
P-0023401-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061968	38074562	Intron of FOXA1(-):52bp before exon 2	IGR: 16Kb before FOXA1(-)	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.73-52:FOXA1_chr14:g.38074562inv	IMPPRECISE		MANUAL_OK	3to3	-	12594	NA	0	110	0	108
P-0023404-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876598	42873536	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-3420:TMPRSS2_c.40-59054:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996938	NA	0	23	10	23
P-0023404-T01-IM6	SOMATIC	PANX2	TP53	22	17	50604157	7576891	IGR: 5Kb before PANX2(+)	Exon 9 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;22)(p13.1;q13.33)(chr17:g.7576891::chr22:g.50604157)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	15
P-0023407-T01-IM6	SOMATIC	TP53	TP53	17	17	7576243	7576943	Intron of TP53(-):609bp after exon 9	Intron of TP53(-):17bp before exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.920-17_c.993+610del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	700	NA	0	130	0	190
P-0023440-T01-IM6	SOMATIC	BRIP1	ABCA5	17	17	59885938	67262750	Exon 7 of BRIP1(-)	Intron of ABCA5(-):1Kb after exon 22	GRCh37	INVERSION	BRIP1 (NM_032043) - ABCA5 (NM_172232) rearrangement: c.808:BRIP1_c.3144+1334:ABCA5inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7376812	NA	0	15	10	18
P-0023445-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118375092	118395732	Exon 27 of KMT2A(+)	3-UTR of KMT2A(+):89Kb after coding stop	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.8485_c.*2845inv	PRECISE		MANUAL_OK	3to3	-	20640	NA	0	14	10	16
P-0008083-T02-IM6	SOMATIC	PALB2	PALB2	16	16	23646576	23647902	Exon 4 of PALB2(-)	Intron of PALB2(-):247bp before exon 4	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.212-247_c.1291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1326	NA	0	46	10	50
P-0008083-T02-IM6	SOMATIC	MKRN1	BRAF	7	7	140160164	140484505	Intron of MKRN1(-):428bp before exon 3	Intron of BRAF(-):2Kb before exon 10	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) fusion (MKRN1 exons 1-2 fused with BRAF exons 10-18): c.315-428:MKRN1_c.1178-1548:BRAFdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MKRN1:BRAF}	324341	NA	0	27	0	28
P-0023453-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11095773	11107671	Intron of SMARCA4(+):175bp before exon 3	Intron of SMARCA4(+):451bp after exon 11	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.223-176_c.1812+451dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	11898	NA	0	8	8	8
P-0023453-T01-IM6	SOMATIC	THOC2	EIF4A2	X	3	122823360	186506986	Intron of THOC2(-):3Kb before exon 8	Exon 11 of EIF4A2(+)	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(X;3)(q25;q27.3)(chrX:g.122823360::chr3:g.186506986)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	19	10	23
P-0023457-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32902261	32912607	Intron of BRCA2(+):1Kb before exon 8	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) Rearrangement :  c.632-1319_c.4115inv	PRECISE		MANUAL_OK	5to5	-	10346	NA	0	123	10	138
P-0023507-T01-IM6	SOMATIC	CALR	NFIX	19	19	13051253	13147194	Exon 5 of CALR(+)	Intron of NFIX(+):11Kb after exon 2	GRCh37	DELETION	CALR (NM_004343) - NFIX (NM_002501) rearrangement: c.689:CALR_c.559+10828:NFIXdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CALR:NFIX}	95941	NA	0	55	10	56
P-0023526-T01-IM6	SOMATIC	TMIE	SETD2	3	3	46747620	47165971	Intron of TMIE(+):223bp after exon 2	Exon 3 of SETD2(-)	GRCh37	INVERSION	SETD2 (NM_014159) - TMIE (NM_147196) rearrangement: c.155:SETD2_c.211+223:TMIEinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SETD2:TMIE}	418351	NA	0	36	10	38
P-0023533-T01-IM6	SOMATIC	AR	KCNV1	X	8	66766095	110939596	Exon 1 of AR(+)	IGR: 40Kb before KCNV1(-)	GRCh37	TRANSLOCATION	AR (NM_00004) rearrangement: t(8;X)(q23.2;q12)(chr8:g.110939596::chrX:g.66766095)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	19	10	24
P-0019262-T02-IM6	SOMATIC	IRS2	IRS2	13	13	110430373	110434463	Intron of IRS2(-):4Kb after exon 1	Exon 1 of IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.4012+4016_c.3938del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4090	NA	0	51	10	56
P-0019262-T02-IM6	SOMATIC	APC	SRP19	5	5	112173862	112189020	Exon 16 of APC(+)	IGR: 8Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.2571_chr5:g.112189020del	IMPPRECISE		MANUAL_OK	3to5	-	15158	NA	0	5	0	5
P-0019262-T02-IM6	SOMATIC	FUBP3	ABL1	9	9	133484759	133738428	Intron of FUBP3(+):581bp before exon 3	Intron of ABL1(+):6bp after exon 4	GRCh37	DUPLICATION	ABL1 (NM_005157) - FUBP3 (NM_003934) rearrangement: c.822+6:ABL1_c.191-582:FUBP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ABL1:FUBP3}	253669	NA	0	12	10	13
P-0023516-T01-IM6	SOMATIC	COLEC12	CDK12	18	17	386902	37665943	Intron of COLEC12(-):29Kb before exon 3	Intron of CDK12(+):14bp before exon 7	GRCh37	TRANSLOCATION	COLEC12 (NM_130386) - CDK12(NM_016507) rearrangement: t(17;18)(q12;p11.32)(chr17:g.37665943::chr18:g.386902)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {COLEC12:CDK12}	0	NA	0	44	10	64
P-0023523-T01-IM6	SOMATIC	BRCA1	MAP2K6	17	17	41228418	67432461	Intron of BRCA1(-):86bp after exon 13	Intron of MAP2K6(+):21Kb after exon 1	GRCh37	DUPLICATION	BRCA1 (NM_007294) - MAP2K6 (NM_002758) rearrangement: c.4484+87:BRCA1_c.16+21320:MAP2K6dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	26204043	NA	0	36	10	37
P-0023523-T01-IM6	SOMATIC	PRKCI	VPS8	3	3	169997984	184650888	Intron of PRKCI(+):30bp before exon 9	Intron of VPS8(+):3Kb after exon 33	GRCh37	DUPLICATION	VPS8 (NM_015303) - PRKCI (NM_002740) rearrangement: c.2892+2532:VPS8_c.706-31:PRKC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {VPS8:PRKCI}	14652904	NA	0	9	10	12
P-0023532-T01-IM6	SOMATIC	FAM149A	FAT1	4	4	187081976	187557755	Intron of FAM149A(+):2Kb before exon 9	Exon 5 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) - FAM149A (NM_001006655) rearrangement: c.3956:FAT1_c.730-2023:FAM149Adel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	475779	NA	0	50	10	54
P-0023544-T01-IM6	SOMATIC	ETV6	LRP6	12	12	12035485	12422377	Intron of ETV6(+):2Kb before exon 6	Promoter of LRP6(-):153Kb from tx start	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-1894_chr12:g.12422377del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	386892	NA	0	23	10	24
P-0023544-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49434119	49439444	Exon 31 of KMT2D(-)	Intron of KMT2D(-):258bp after exon 18	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.7434_c.4741+259del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5325	NA	0	2	10	2
P-0023546-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869250	42877268	Intron of TMPRSS2(-):795bp after exon 2	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+796_c.55+2609del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	8018	NA	0	72	10	78
P-0023547-T01-IM6	SOMATIC	ZNF174	CREBBP	16	16	3461991	3823661	Promoter of ZNF174(+):11Kb from tx start	Intron of CREBBP(-):90bp after exon 13	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: chr16:g.3461991_c.2463+91del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	361670	NA	0	21	10	25
P-0023613-T01-IM6	SOMATIC	CIC	TP53	19	17	42791952	7572859	Intron of CIC(+):9bp before exon 6	3-UTR of TP53(-):67bp after coding stop	GRCh37	TRANSLOCATION	CIC (NM_015125) - TP53 (NM_000546) rearrangement: t(17;19)(p13.1;q13.2)(chr17:g.7572859::chr19:g.42791952)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	65	10	74
P-0023617-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646444	149782946	Intron of ROS1(-):866bp before exon 34	Intron of CD74(-):71bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_00102515) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149782946::chr6:g.117646444)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	37	10	36
P-0023621-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39838718	42869564	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):481bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused to ERG exons 2-10): c.126+482:TMPRSS2_c.19-21174:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3030846	NA	0	43	10	44
P-0023566-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268189	55272128	Intron of EGFR(+):83bp after exon 24	Intron of EGFR(+):820bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2946+83_c.3272-821del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3939	NA	0	158	10	169
P-0003862-T01-IM5	SOMATIC	ATRX	ATRX	X	X	76886768	76889060	Intron of ATRX(-): 2Kb after exon 19	Exon 18 of ATRX(-)	GRCh37	DELETION	ATRX1 (NM_000489) rearrangement: c.4950_c.5134+1927:ATRXdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2292	NA	0	79	95	102
P-0006145-T01-IM5	SOMATIC	PDGFRA	EXOC1	4	4	55138553	56733811	Intron of PDGFRA(+): 8bp before exon 9	Intron of EXOC1(+): 691bp before exon 5	GRCh37	DUPLICATION	EXOC1 (NM_001024924) - PDGFRA (NM_006206) rearrangement: c.416-691:EXOC1_c.1238-8:PDGFRAdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (EXOC1-PDGFRA)	1595258	NA	0	102	128	336
P-0015116-T03-IM6	SOMATIC	ZFP42	PIK3CB	4	3	188952534	138456698	IGR: 36Kb before ZFP42(+)	Exon 4 of PIK3CB(-)	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;4)(q22.3;q35.2)(chr3:g.138456698::chr4:g.188952534)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	6
P-0022062-T01-IM6	SOMATIC	FLT3	PAN3	13	13	28624316	28727766	Exon 6 of FLT3(-)	Intron of PAN3(+):15Kb after exon 1	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.658:FLT3_chr13:g.28727766del	IMPPRECISE		MANUAL_OK	3to5	-	103450	NA	0	39	0	133
P-0022282-T01-IM6	SOMATIC	MAP3K1	ARFIP1	5	4	56161250	153712327	Exon 5 of MAP3K1(+)	5-UTR of ARFIP1(+):38Kb before coding start	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) - ARFIP1 (NM_001025595)  rearrangement: t(4;5)(q31.3;q11.2)(chr4:g.153712327::chr5:g.56161250)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAP3K1:ARFIP1}	0	NA	0	5	10	5
P-0022282-T01-IM6	SOMATIC	BRAF	GPM6A	7	4	140454168	176630702	Intron of BRAF(-):135bp before exon 14	Intron of GPM6A(-):8Kb before exon 3	GRCh37	TRANSLOCATION	BRAF (NM_004333) - GPM6A (NM_005277) rearrangement: t(4;7)(q34.2;q34)(chr4:g.176630702::chr7:g.140454168)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	10
P-0022335-T01-IM6	SOMATIC	PTPRS	SYDE1	19	19	5229413	15220624	Intron of PTPRS(-):60bp before exon 16	Exon 3 of SYDE1(+)	GRCh37	DELETION	PTPRS (NM_002850) - SYDE1 (NM_033025) Rearrangement : c.2350-60:PTPRS_c.540:SYDE1	PRECISE		MANUAL_OK	3to5	-	9991211	NA	0	27	10	29
P-0023644-T01-IM6	SOMATIC	CTCF	CTCF	16	16	67641628	67644724	5-UTR of CTCF(+):3Kb before coding start	5-UTR of CTCF(+):11bp before coding start	GRCh37	DELETION	CTCF (NM_006565) Rearrangement : c.-9-3099_c.-9-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3096	NA	1	26	10	26
P-0006602-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39835131	42867073	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):568bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-10): c.127-568:TMPRSS2_c.19-17587:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3031942	NA	0	106	10	113
P-0008083-T03-IM6	SOMATIC	PALB2	PALB2	16	16	23646576	23647902	Exon 4 of PALB2(-)	Intron of PALB2(-):247bp before exon 4	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.212-247_c.1291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1326	NA	0	31	10	31
P-0008083-T03-IM6	SOMATIC	MKRN1	BRAF	7	7	140160168	140484511	Intron of MKRN1(-):432bp before exon 3	Intron of BRAF(-):2Kb before exon 10	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) rearrangement: c.315-432:MKRN1_c.1178-1554:BRAFdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MKRN1:BRAF}	324343	NA	0	9	0	12
P-0008346-T03-IM6	SOMATIC	PARVA	EGFR	11	7	12552528	55269578	3-UTR of PARVA(+):153Kb after coding stop	Intron of EGFR(+):103bp after exon 26	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;11)(p11.2;p15.3)(chr7:g.55269578::chr11:g.12552528)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	10	28
P-0016221-T02-IM6	SOMATIC	KIF5B	RET	10	10	32317081	43611268	Intron of KIF5B(-):274bp after exon 15	Intron of RET(+):763bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 with RET exons 12-20 including the kinase domain): c.1725+275:KIF5B_c.2137-764:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294187	NA	0	21	10	23
P-0023605-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874146	42868088	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-10): c.127-1583:TMPRSS2_c.-3842:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2993942	NA	0	17	0	18
P-0023625-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863632	42870536	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):420bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.-56-420:TMPRSS2_chr21:g.39863632del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006904	NA	0	10	10	10
P-0023629-T01-IM6	SOMATIC	CSDE1	HIST2H2BF	1	1	115263231	149712153	Exon 18 of CSDE1(-)	IGR: 42Kb before HIST2H2BF(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.2119:CSDE1_chr1:g.149712153del	PRECISE		MANUAL_OK	3to5	-	34448922	NA	0	3	10	4
P-0023629-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39835019	42872019	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.-56-1903:TMPRSS2_c.19-17475:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3037000	NA	0	7	9	7
P-0023663-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834156	42869591	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):454bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 3-10): c.126+455:TMPRSS2_c.19-16612:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035435	NA	0	69	10	87
P-0023666-T01-IM6	SOMATIC	AR	AR	X	X	66935630	66943365	Intron of AR(+):2Kb before exon 5	Intron of AR(+):162bp before exon 8	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-1690_c.2608-163del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	7735	NA	0	6	9	6
P-0023668-T01-IM6	SOMATIC	NEK8	KMT2D	17	12	27056368	49415892	Intron of NEK8(+):490bp after exon 1	Exon 53 of KMT2D(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - NEK8 (NM_178170) rearrangement: t(12;17)(q13.12;q11.2)(chr12:g.49415892::chr17:g.27056368)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	20	10	20
P-0023678-T01-IM6	SOMATIC	RECQL4	LRRC24	8	8	145738412	145749467	Exon 16 of RECQL4(-)	Intron of LRRC24(-):26bp after exon 4	GRCh37	DUPLICATION	RECQL4 (NM_004260) - LRRC24 (NM_001024678) Rearrangement : c.2574:RECQL4_c.607+2:LRRC24dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RECQL4:LRRC24}	11055	NA	0	20	10	20
P-0023680-T01-IM6	SOMATIC	PSMF1	RNF43	20	17	1042563	56492855	IGR: 51Kb before PSMF1(+)	Exon 2 of RNF43(-)	GRCh37	TRANSLOCATION	RNF43 (NM_017763) Rearrangement : t(17,20)(q23.1,p13)(chr17:g.56492855::chr20:g.1042563)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	41	10	41
P-0023682-T01-IM6	SOMATIC	STK11	CDC42	19	1	1221235	22405880	Exon 6 of STK11(+)	Intron of CDC42(+):804bp after exon 2	GRCh37	TRANSLOCATION	STK11 (NM_000455) - CDC42 (NM_001791) Rearrangement : t(1,19)(p13.3; p36.13)(chr1:g.22405880::chr19:g.1221235)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STK11:CDC42}	0	NA	0	33	10	44
P-0023701-T01-IM6	SOMATIC	RPTOR	BAIAP2	17	17	78935199	79014889	Exon 31 of RPTOR(+)	Intron of BAIAP2(+):6Kb after exon 1	GRCh37	DUPLICATION	BAIAP2 (NM_017451) - RPTOR (NM_020761) Rearrangement : c.54+5781:BAIAP2_c.3611:RPTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BAIAP2:RPTOR}	79690	NA	0	28	10	29
P-0023712-T01-IM6	SOMATIC	CCDC178	DCUN1D1	18	3	30979666	182665457	Intron of CCDC178(-):2Kb before exon 4	Intron of DCUN1D1(-):37bp before exon 5	GRCh37	TRANSLOCATION	CCDC178 (NM_001105528) - DCUN1D1 (NM_020640) rearrangement: t(3;18)(q26.33;q12.1)(chr3:g.182665457::chr18:g.30979666)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CCDC178:DCUN1D1}	0	NA	0	31	10	31
P-0023716-T01-IM6	SOMATIC	EP300	EP300	22	22	41558702	41560051	Intron of EP300(+):24bp before exon 21	Intron of EP300(+):5bp before exon 22	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3672-25_c.3729-6del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1349	NA	0	83	0	84
P-0023721-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11021278	11027432	Intron of CARM1(+):1Kb after exon 4	Exon 8 of CARM1(+)	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: c.558+1395_c.999del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6154	NA	0	4	10	5
P-0023732-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139385688	139400334	IGR: 3Kb before NOTCH1(-)	Intron of NOTCH1(-):1bp before exon 25	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: chr9:g.139385688inv_c.4015-1inv	PRECISE		MANUAL_OK	3to3	-	14646	NA	0	41	10	40
P-0023735-T01-IM6	SOMATIC	TP53BP1	LOC101927153	15	15	43714391	94303402	Intron of TP53BP1(-):67bp before exon 19	IGR: 96Kb before LOC101927153(+)	GRCh37	DELETION	TP53BP1 (NM_001141980) rearrangement: c.3829-67_chr15:g.94303402del	PRECISE		MANUAL_OK	3to5	-	50589011	NA	0	25	10	25
P-0023735-T01-IM6	SOMATIC	NF1	COPRS	17	17	29553523	30145431	Exon 18 of NF1(+)	IGR: 33Kb before COPRS(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2072_chr17:g.30145431del	PRECISE		MANUAL_OK	3to5	-	591908	NA	0	5	10	6
P-0023741-T01-IM6	SOMATIC	TP53	AFAP1L2	17	10	7580804	116100904	5-UTR of TP53(-):8Kb before coding start	Intron of AFAP1L2(-):414bp before exon 2	GRCh37	TRANSLOCATION	TP53 (NM_000546) - AFAP1L2 (NM_001001936) rearrangement: t(10;17)(q25.3;p13.1)(chr10:g.116100904::chr17:g.7580804)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	14
P-0023789-T01-IM6	SOMATIC	APC	LOC101927460	5	5	112103134	124747396	Intron of APC(+):47bp after exon 4	IGR: 82Kb before LOC101927460(+)	GRCh37	DELETION	APC (NM_000038) Rearrangement : chr5:g.124747396_c.422+47:APCdel	PRECISE		MANUAL_OK	3to5	-	12644262	NA	0	10	9	13
P-0023790-T01-IM6	SOMATIC	FOXJ3	NOTCH2	1	1	42702713	120509025	Intron of FOXJ3(-):9Kb before exon 5	Exon 9 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) Rearrangement : c.445-9076:FOXJ3_c.1541:NOTCH2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	77806312	NA	0	28	10	37
P-0023790-T01-IM6	SOMATIC	MED24	AXIN2	17	17	38191851	63534242	Intron of MED24(-):123bp after exon 4	Intron of AXIN2(-):78bp after exon 5	GRCh37	DELETION	AXIN1 (NM_004655) - MED24 (NM_014815) Rearrangement : c.1200+79:AXIN2_c.326+124:MED24del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {AXIN2:MED24}	25342391	NA	0	36	10	38
P-0011247-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55222771	55230556	Intron of EGFR(+):751bp before exon 8	Intron of EGFR(+):869bp before exon 14	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.890-752_c.1632-870del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	7785	NA	0	14	10	17
P-0023746-T01-IM6	SOMATIC	CDKN2A	DMRTA1	9	9	21974749	22278766	Exon 1 of CDKN2A(-)	IGR: 168Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2A (NM_000077, NM_058195) rearrangement: c.78:CDKN2Ap16INK4A_chr9:g.22278766del, c.194-3542:CDKN2Ap14ARF_chr9:g.22278766del	PRECISE		MANUAL_OK	3to5	-	304017	NA	0	9	10	9
P-0023749-T01-IM6	SOMATIC	CALR	FAM169A	19	5	13054335	74082385	Intron of CALR(+):15bp before exon 8	Intron of FAM169A(-):3Kb before exon 12	GRCh37	TRANSLOCATION	FAM169A (NM_015566) - CALR (NM_004343) rearrangement: t(5;19)(q13.3;p13.2)(chr5:g74082385::chr19:g.13054335)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FAM169A:CALR}	0	NA	0	21	10	33
P-0023753-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39848732	42872201	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2085:TMPRSS2_:c.18+21555:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3023469	NA	0	18	10	20
P-0021519-T02-IM6	SOMATIC	BRAF	AGAP3	7	7	140493112	150825913	Intron of BRAF(-):995bp after exon 8	Intron of AGAP3(+):142bp after exon 10	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) Rearrangement : c.1326+142:AGAP3_c.1140+996:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGAP3:BRAF}	10332801	NA	0	63	10	60
P-0023272-T01-IM6	SOMATIC	FH	FH	1	1	241659476	241663568	Promoter of FH(-):1Kb from tx start	Intron of FH(-):168bp after exon 9	GRCh37	DELETION	FH (NM_000143) Rearrangement : c.1390+169_c.*1652_del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4092	NA	0	5	9	5
P-0023756-T01-IM6	SOMATIC	NF2	HMGXB4	22	22	30090638	35655986	Intron of NF2(+):102bp before exon 16	5-UTR of HMGXB4(+):36Kb before coding start	GRCh37	DUPLICATION	HMGXB4 (NM_001003681) - NF2 (NM_000268) rearrangement: c.-68-2330:HMGXB4_c.1738-103:NF2dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {HMGXB4:NF2}	5565348	NA	0	13	10	15
P-0023764-T01-IM6	SOMATIC	DRD4	ATM	11	11	638545	108235890	Intron of DRD4(+):887bp before exon 2	Exon 62 of ATM(+)	GRCh37	INVERSION	ATM (NM_000051) rearrangement: chr11:g.638545_c.8932inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	107597345	NA	0	2	5	2
P-0023764-T01-IM6	SOMATIC	RPS6KB2	EXPH5	11	11	67200453	108447231	Exon 8 of RPS6KB2(+)	Intron of EXPH5(-):17Kb after exon 1	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.647_chr11:g.108447231del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	41246778	NA	0	2	8	2
P-0023768-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1618514	1619750	Intron of TCF3(-):595bp after exon 15	Intron of TCF3(-):28bp after exon 13	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1450+596_c.1167+29inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1236	NA	0	2	4	2
P-0023771-T01-IM6	SOMATIC	TSC2	ZC3H7A	16	16	2111895	11886752	Exon 12 of TSC2(+)	5-UTR of ZC3H7A(-):42Kb before coding start	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1143_chr16:g.11886752del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	9774857	NA	0	32	10	33
P-0023771-T01-IM6	SOMATIC	TMIGD2	CIC	19	19	4293516	42790931	Intron of TMIGD2(-):634bp before exon 5	Exon 2 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: chr19:g.4293516_c.76del	PRECISE		MANUAL_OK	3to5	-	38497415	NA	0	27	10	28
P-0023771-T01-IM6	SOMATIC	ATP4A	CIC	19	19	36054198	42794647	Intron of ATP4A(-):28bp before exon 3	Exon 10 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) - ATP4A (NM_000704) rearrangement: c.1727_c.157-28inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:ATP4A}	6740449	NA	0	24	10	22
P-0023776-T01-IM6	SOMATIC	TCF7L2	HABP2	10	10	114889529	115137987	Intron of TCF7L2(+):11Kb before exon 6	IGR: 173Kb before HABP2(+)	GRCh37	INVERSION	TCF7L2 (NM_001146274) rearrangement: c.553-11414_chr10:g.115137987inv	PRECISE		MANUAL_OK	5to5	-	248458	NA	0	4	10	4
P-0023776-T01-IM6	SOMATIC	ERCC2	ERCC1	19	19	45858062	45933447	Exon 17 of ERCC2(-)	IGR: 17Kb before ERCC1(-)	GRCh37	DELETION	ERCC2 (NM_000400) rearrangement: c.1591_chr19:g.45933447del	PRECISE		MANUAL_OK	3to5	-	75385	NA	0	27	10	28
P-0002266-T01-IM3	SOMATIC	ALK	EML4	2	2	29447283	42473849	Intron of ALK(-): 889bp before exon 20	Intron of EML4(+): 1Kb after exon 2	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13026566	NA	0	5	5	8
P-0002266-T01-IM3	SOMATIC	ALK	EML4	2	2	29447288	42473852	Intron of ALK(-): 894bp before exon 20	Intron of EML4(+): 1Kb after exon 2	GRCh37	INVERSION	ALK (NM_004304) and EML4 (NM_019063) reciprocal inversion (13026566bp):  c.3173-889:ALK_c.208+1022:EML4inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (ALK-EML4)	13026564	NA	0	4	14	8
P-0004218-T01-IM5	SOMATIC	ALK	EML4	2	2	29447087	42552850	Intron of ALK(-): 693bp before exon 20	Intron of EML4(+): 156bp after exon 19	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304)  Fusion (EML4 exon 20 fused with ALK exon 20) :  c.2068+156:EML4_c.3173-693:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13105763	NA	0	49	61	48
P-0004634-T01-IM5	SOMATIC	E2F3	E2F3	6	6	20401811	20402639	Promoter of E2F3(+): 326bp from tx start	Exon 1 of E2F3(+)	GRCh37	DELETION	E2F3 (NM_001949) rearrangement: c.-653_c.176del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	828	NA	0	9	0	9
P-0004881-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14218794	14628272	Intron of PRKACA(-): 573bp before exon 2	Intron of DNAJB1(-): 414bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730)  fusion (DNAJB1 exon 1 fused with PRKACA exons 2-10) : c.212-414:DNAJB1_c.47-573:PRKACAdel (PMID: 24578576)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	409478	NA	0	55	54	55
P-0005716-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29688428	128662783	Intron of EWSR1(+): 49bp before exon 10	Intron of FLI1(+): 11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(22;11)(q12.2;11q24.3)(chr22:g.29688428::chr11:g.128662783)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	4	12	4
P-0006237-T01-IM5	SOMATIC	ROS1	COL4A3BP	6	5	117658389	74766330	Exon 31 of ROS1(-)	Intron of COL4A3BP(-): 11Kb before exon 4	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(5;6)(q13.3;q22.1)(chr5:g.74766330::chr6:g.117658389)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	33	36	32
P-0006454-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14220992	14627553	Intron of PRKACA(-): 3Kb before exon 2	Exon 2 of DNAJB1(-)	GRCh37	DELETION	PRKACA (NM_002730) - DNAJB1 (NM_006145) rearrangement : c.47-2771:PRKACA_c.517:DNAJB1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DNAJB1-PRKACA)	406561	NA	0	23	50	13
P-0007772-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88600844	12020257	Intron of NTRK3(-): 25Kb before exon 13	Intron of ETV6(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) reciprocal fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20) : t(12;15)(p13.2;q25.3)(chr12:g.12020257::chr15:g.88600844 )	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	62	21	57
P-0008210-T01-IM5	SOMATIC	EWSR1	ATF1	22	12	29691427	51160825	Intron of EWSR1(+): 802bp before exon 11	5-UTR of ATF1(+): 13Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) rearrangement: t(12;22)(q13;q12)(chr12:g.51160825:: chr22:g.29691427)	PRECISE		MANUAL_OK	3to5	Transcript fusion (EWSR1-ATF1)	0	NA	0	3	4	3
P-0021909-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89720760	89755903	Exon 8 of PTEN(+)	IGR: 133Kb before PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.911:PTEN_chr10:g.89755903del	PRECISE		MANUAL_OK	3to5	-	35143	NA	0	4	10	16
P-0023866-T01-IM6	SOMATIC	FGFR1	ACPP	8	3	38287577	132078761	Intron of FGFR1(-):111bp before exon 4	Intron of ACPP(+):3Kb after exon 10	GRCh37	TRANSLOCATION	ACPP (NM_001134194) -FGFR1 (NM_001174067) rearrangement: t(3;8)(q22.1;p11.23)(chr3:g.132078761::chr8:g.38287577)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ACPP:FGFR1}	0	NA	0	16	10	15
P-0006151-T02-IM6	SOMATIC	ZMAT4	RECQL4	8	8	40459727	145742146	Intron of ZMAT4(-):21Kb before exon 6	Exon 5 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) - ZMAT4 (NM_024645) Rearrangement : c.357:RECQL4_c.578-20947:ZMAT4inv	PRECISE		MANUAL_OK	3to3	-	105282419	NA	0	13	10	13
P-0023827-T01-IM6	SOMATIC	APAF1	FH	12	1	99115177	241669480	Intron of APAF1(+):2Kb before exon 22	Intron of FH(-):12bp before exon 6	GRCh37	TRANSLOCATION	FH (NM_000143) Rearrangement : t(1;12)(q42.3;q23.1)(chr1:g.241669480::chr12:g.99115177)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0023827-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15949434	15974792	Intron of NCOR1(-):830bp after exon 42	Exon 30 of NCOR1(-)	GRCh37	DELETION	NCOR1 (NM_006311) Rearrangement : c.4083_c.6679+831del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25358	NA	0	12	10	12
P-0023835-T01-IM6	SOMATIC	KMT2B	TMEM86B	19	19	36229354	55726888	Exon 37 of KMT2B(+)	IGR: 11Kb before TMEM86B(-)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.8044_chr19:g.55726888inv	PRECISE		MANUAL_OK	5to5	-	19497534	NA	0	68	10	84
P-0023835-T01-IM6	SOMATIC	KIAA1211L	ERCC3	2	2	99519316	128036795	5-UTR of KIAA1211L(-):108Kb before coding start	Exon 10 of ERCC3(-)	GRCh37	DUPLICATION	KIAA1211L (NM_207362) - ERCC3 (NM_000122) rearrangement: c.-11+33085:KIAA1211L_c.1684:ERCC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIAA1211L:ERCC3}	28517479	NA	0	45	10	49
P-0023835-T01-IM6	SOMATIC	ATR	LOC388942	3	2	142177842	41959144	Exon 44 of ATR(-)	IGR: 146Kb before LOC388942(+)	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(8;13)(p21;q23)(chr2:g.41959144::chr3:g.142177842)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	10	41
P-0023838-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486523	57487653	Intron of NAB2(+):159bp after exon 3	Intron of NAB2(+):272bp after exon 6	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1091+159_c.1468+272inv	PRECISE		MANUAL_OK	5to5	-	1130	NA	0	2	6	2
P-0023838-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876787	42867929	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.127-1424:TMPRSS2_c.40-59243:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991142	NA	0	36	10	41
P-0023855-T01-IM6	SOMATIC	PIK3R1	UBR3	5	2	67592113	170688316	Exon 15 of PIK3R1(+)	Intron of UBR3(+):4Kb after exon 1	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) - UBR3 (NM_172070) Rearrangement : t(2;5)(q24.3;q13.1)(chr2:g.170688316::chr5:g. 67592113)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PIK3R1:UBR3}	0	NA	0	5	10	4
P-0023879-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36206529	36236042	Intron of RUNX1(-):177bp after exon 7	Intron of RUNX1(-):4Kb before exon 6	GRCh37	DELETION	RUNX1 (NM_001754) Rearrangement : c.509-416_c.805+178del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	29513	NA	0	32	10	34
P-0023898-T01-IM6	SOMATIC	CDH1	XRCC6BP1	16	12	68845628	58632676	Exon 7 of CDH1(+)	IGR: 297Kb before XRCC6BP1(+)	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(12;16)(q14.1;q22.1)(chr12:g.58632676::chr16:g.68845628)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0023899-T01-IM6	SOMATIC	CAMTA1	NOTCH2	1	1	7232798	120491589	Intron of CAMTA1(+):77Kb before exon 5	Intron of NOTCH2(-):40bp after exon 16	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.2599+41:NOTCH2_chr1:g.7232798del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	113258791	NA	0	8	10	8
P-0023899-T01-IM6	SOMATIC	RPS6KB2	LOC101928944	11	11	67199260	80143138	Intron of RPS6KB2(+):274bp after exon 5	IGR: 319Kb before LOC101928944(-)	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.457+274: RPS6KB2_chr11:g.80143138del	PRECISE		MANUAL_OK	3to5	-	12943878	NA	0	7	10	6
P-0023910-T01-IM6	SOMATIC	MIR4275	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	3	9	3
P-0023913-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30671024	30673526	Exon 12 of MDC1(-)	Exon 10 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.3434_c.5722inv	PRECISE		MANUAL_OK	3to3	-	2502	NA	0	2	5	1
P-0023919-T01-IM6	SOMATIC	RPS6KB2	NDUFV1	11	11	67199006	67366202	Intron of RPS6KB2(+):20bp after exon 5	IGR: 8Kb before NDUFV1(+)	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.457+20:RPS6KB2_chr11:g.67366202del	PRECISE		MANUAL_OK	3to5	-	167196	NA	0	21	10	22
P-0002587-T01-IM3	SOMATIC	BCL2L1	TSC2	20	16	30301865	2125928	Intron of BCL2L1(-): 8Kb after exon 2	Intron of TSC2(+): 35bp after exon 23	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (TSC2-BCL2L1)	0	NA	0	102	101	113
P-0023994-T01-IM6	SOMATIC	LMNA	NTRK1	1	1	156107917	156844525	Intron of LMNA(+):361bp before exon 10	Intron of NTRK1(+):107bp after exon 10	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion (LMNA exons 1-10 fused to NTRK1 exons 11-17): c.1699-362:LMNA_c.1251+107:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LMNA:NTRK1}	736608	NA	0	11	10	11
P-0000227-T01-IM3	SOMATIC	EWSR1	ATF1	22	12	29685872	51200898	Intron of EWSR1(+): 530bp before exon 9	Intron of ATF1(+): 2Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - ATF1 (NM_005171.4) Translocation  t(22;12)(q12.2;q13.12)(c.974+1097_c.195-2341)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ATF1-EWSR1)	0	NA	0	6	12	9
P-0000227-T01-IM3	SOMATIC	EWSR1	ATF1	22	12	29685874	51200911	Intron of EWSR1(+): 528bp before exon 9	Intron of ATF1(+): 2Kb before exon 4	GRCh37	TRANSLOCATION		IMPRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-ATF1)	0	NA	0	3	0	9
P-0001872-T01-IM3	SOMATIC	EWSR1	ATF1	22	12	29691264	51175004	Intron of EWSR1(+): 965bp before exon 11	Intron of ATF1(+): 983bp after exon 2	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-ATF1)	0	NA	0	6	17	15
P-0003001-T01-IM3	SOMATIC	TMPRSS2	SIK1	21	21	42870635	44843452	Intron of TMPRSS2(-): 519bp before exon 2	Intron of SIK1(-): 2Kb before exon 4	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-SIK1)	1972817	NA	0	5	8	5
P-0003139-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876764	42866368	Intron of ERG(-): 59Kb before exon 4	Exon 3 of TMPRSS2(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (TMPRSS2-ERG)	2989604	NA	0	19	50	25
P-0004163-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684085	32416516	Intron of EWSR1(+): 510bp before exon 7	Intron of WT1(-): 1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-8 with WT1 exons 8-10) : t(11;22)(11q13;22q12.2)(chr11:g.32416516::chr22:g.29684085)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	23	14	23
P-0005318-T01-IM5	SOMATIC	NAB2	LRP1	12	12	57486839	57514505	Intron of NAB2(+): 7bp before exon 5	IGR: 8Kb before LRP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) Rearrangement : c.1144-7_g.57514505inv	PRECISE		MANUAL_OK	3to3	-	27666	NA	0	51	54	20
P-0005556-T01-IM5	SOMATIC	RET	CCDC6	10	10	43611828	61643992	Intron of RET(+): 204bp before exon 12	Intron of CCDC6(-): 22Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon1 with RET exons 12-20) - c.303+21888:CCDC6_c.2137-204:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18032164	NA	0	7	16	7
P-0007010-T02-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971071	21972284	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 1Kb before exon 2	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.151-1077_287inv CDKN2Ap14ARF (NM_058195) rearrangement : c.194-1077_330inv	IMPRECISE		MANUAL_OK	3to3	-	1213	NA	0	72	0	69
P-0007409-T01-IM5	SOMATIC	TFE3	PRCC	X	1	48895686	156766569	Intron of TFE3(-): 36bp after exon 4	Intron of PRCC(+): 499bp before exon 6	GRCh37	TRANSLOCATION	PRCC (NM_005973) TFE3 (NM_006521) fusion (PRCC exons 1-5 fused to TFE3 exons 4-10): t(1;X)(q23.1;p11.23)(chr1:g.156766569::chrX:g.48895686)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (PRCC-TFE3)	0	NA	0	92	58	91
P-0007424-T01-IM5	SOMATIC	KIF5B	RET	10	10	32316744	43610388	Intron of KIF5B(-): 612bp after exon 15	Intron of RET(+): 204bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20):  c.1725+612:KIF5B_c.2136+204:RETinv	IMPRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11293644	NA	0	4	0	4
P-0007647-T02-IM5	SOMATIC	TACR3	TET2	4	4	104768006	106164817	IGR: 257Kb before TACR3(-)	Exon 6 of TET2(+)	GRCh37	DUPLICATION	TET2 (NM_001127208) rearrangement: chr4:g.104768006 _c.3685dup	PRECISE		MANUAL_OK	5to3	-	1396811	NA	0	15	32	15
P-0007908-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683515	32416127	Intron of EWSR1(+): 392bp after exon 6	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - WT1 (NM_024426) fusion (EWSR1 exons 1-7 fused with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:g.32416127::chr22:g.29683515)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	12	22	12
P-0008347-T01-IM5	SOMATIC	RICTOR	TBC1D9B	5	5	38952269	179293338	Intron of RICTOR(-): 29bp after exon 30	Intron of TBC1D9B(-): 450bp before exon 19	GRCh37	DUPLICATION	RICTOR (NM_152756) - TBC1D9B (NM_198868) Rearrangement : c.3127+29:RICTOR_c.2915-450:TBC1D9Bdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (RICTOR-TBC1D9B)	140341069	NA	0	24	33	24
P-0008960-T01-IM5	SOMATIC	CDK12	HTR1E	17	6	37646977	87697112	Exon 3 of CDK12(+)	5-UTR of HTR1E(+): 28Kb before coding start	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - HTR1E (NM_000865)  rearrangement: t(6;17)(q14.3;q12)(chr6:g.87697112::chr17:g.37646977)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CDK12-HTR1E)	0	NA	0	61	51	58
P-0008960-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39885570	42867649	Intron of ERG(-): 62Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11): c.127-1144:TMPRSS2_c.39+62016:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2982079	NA	0	53	53	48
P-0008960-T01-IM5	SOMATIC	TERT	CDH6	5	5	1295580	30794048	Promoter of TERT(-): 418bp from tx start	IGR: 400Kb before CDH6(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-476_chr5:g.30794048del	PRECISE		MANUAL_OK	3to5	-	29498468	NA	0	24	19	4
P-0008996-T01-IM5	SOMATIC	ROS1	C6orf204	6	6	117687428	118907433	Exon 18 of ROS1(-)	Intron of C6orf204(-): 20Kb before exon 3	GRCh37	DELETION	CEP85L (NM_001178035) - ROS1 (NM_002944) rearrangement : c.242-19954:CEP85L_c.2623:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (C6orf204-ROS1)	1220005	NA	0	3	5	3
P-0009006-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39867873	42874595	Intron of ERG(-): 2Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-4479:TMPRSS2_c.40-50329:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3006722	NA	0	8	16	8
P-0013729-T01-IM5	SOMATIC	ERCC4	MYC	16	8	14015306	128753292	Intron of ERCC4(+): 582bp before exon 2	3-UTR of MYC(+): 88bp after coding stop	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) - MYC (NM_002467) rearrangement: t(8;16)(q24.21;p13.12)(chr8:g.128753292::chr16:g.14015306)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	21	7	19
P-0013729-T01-IM5	SOMATIC	TMPRSS2	CASZ1	21	1	42868002	10703925	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of CASZ1(-): 557bp before exon 19	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - CASZ1 (NM_001079843) rearrangement: t(1;21)(p36.22;q22.3)(chr1:g.10703925::chr21:g.42868002)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-CASZ1)	0	NA	0	19	0	18
P-0013729-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39868842	42876881	Intron of ERG(-): 1Kb after exon 1	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+2996:TMPRSS2_c.18+1445:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3008039	NA	0	72	72	71
P-0013729-T01-IM5	SOMATIC	MLL3	XRCC2	7	7	151836335	152256329	Exon 57 of MLL3(-)	IGR: 87Kb before XRCC2(-)	GRCh37	DELETION	MLL3 (NM_170606) rearrangement: c.14470:MLL3_chr7:g.152256329del	PRECISE		MANUAL_OK	3to5	-	419994	NA	0	21	40	20
P-0013937-T01-IM5	SOMATIC	TRAF2	TRAF2	9	9	139790997	139794951	5-UTR of TRAF2(+): 2Kb before coding start	Exon 4 of TRAF2(+)	GRCh37	DUPLICATION	TRAF2 (NM_021138) rearrangement:c.-28-2168_c.345dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3954	NA	0	60	55	59
P-0014819-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39849210	42871382	Intron of ERG(-): 21Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (M_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-1266:TMRPSS2_c.18+21077del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3022172	NA	0	16	18	15
P-0014889-T01-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29686943	46333884	Intron of EWSR1(+): 608bp before exon 8	Exon 6 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) fusion (EWSR1 exons 1-9 with CREB3L1 exons 6-12): t(11;22)(p11.2;q12.2)(chr11:g.46333884::chr22:g.29686943)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EWSR1-CREB3L1)	0	NA	0	91	57	91
P-0021671-T01-IM6	SOMATIC	ROS1	CD74	6	5	117657267	149783453	Intron of ROS1(-):1Kb after exon 31	Intron of CD74(-):578bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) rearrangement: t(5,6)(q33.1,q22.1)(chr5:g.149783453::chr6:g.117657267)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	18	10	24
P-0021918-T01-IM6	SOMATIC	ETV6	SUFU	12	10	12033406	104320248	Intron of ETV6(+):4Kb before exon 6	Intron of SUFU(+):10Kb after exon 3	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - SUFU (NM_016169) rearrangement: t(10,12)(q24.32,p13.2)(chr10:g.104320248::chr12:g.12033406)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ETV6:SUFU}	0	NA	0	10	10	11
P-0023550-T01-IM6	SOMATIC	CDK12	RPS6KB1	17	17	37687269	58028299	Exon 14 of CDK12(+)	Promoter of RPS6KB1(+):58Kb from tx start	GRCh37	DUPLICATION	CDK12 (NM_016507) rearrangement: c.4173_chr17:g.58028299dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RPS6KB1:CDK12}	20341030	NA	0	22	10	26
P-0023987-T01-IM6	SOMATIC	NTRK1	TPR	1	1	156844285	186316465	Intron of NTRK1(+):77bp before exon 10	Exon 22 of TPR(-)	GRCh37	INVERSION	TPR (NM_003292) - NTRK1 (NM_002529) rearrangement: c.2902:TPR_c.1196-78:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPR:NTRK1}	29472180	NA	0	143	10	157
P-0023962-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72993582	73001202	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-):180Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.463_c.-49-7109del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7620	NA	0	24	10	24
P-0023962-T01-IM6	SOMATIC	TEX14	BRIP1	17	17	56720883	59763460	Intron of TEX14(-):8Kb after exon 2	Exon 19 of BRIP1(-)	GRCh37	DUPLICATION	TEX14 (NM_001201457) - BRIP1 (NM_032043) rearrangement: c.136+8344:TEX14_c.2642:BRIP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TEX14:BRIP1}	3042577	NA	0	54	10	56
P-0023962-T01-IM6	SOMATIC	ALK	EML4	2	2	29448820	42496646	Intron of ALK(-):389bp before exon 19	Intron of EML4(+):5Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 19-29): c.667+4775:EML4_c.3068-389:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13047826	NA	0	75	10	80
P-0024077-T01-IM6	SOMATIC	DSG3	CDH1	18	16	29034424	68847377	Intron of DSG3(+):2Kb before exon 2	Exon 9 of CDH1(+)	GRCh37	TRANSLOCATION	DSG3 (NM_001944) - CDH1 (NM_004360) rearrangement: t(16;18)(q22.1;q12.1)(chr16:g.68847377::chr18:g.29034424)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DSG3:CDH1}	0	NA	0	23	10	23
P-0024083-T01-IM6	SOMATIC	EIF2AK2	INHA	2	2	37386053	220440232	Promoter of EIF2AK2(-):54Kb from tx start	Exon 2 of INHA(+)	GRCh37	INVERSION	INHA (NM_002191) rearrangement: chr2:g.37386053_c.1085inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {INHA:EIF2AK2}	183054179	NA	0	82	10	85
P-0024083-T01-IM6	SOMATIC	LAMA4	ESR1	6	6	112437814	152163649	Intron of LAMA4(-):618bp before exon 36	Intron of ESR1(+):82bp before exon 3	GRCh37	INVERSION	LAMA4 (NM_001105206) - ESR1 (NM_001122740) rearrangement: c.4982-618:LAMA4_c.453-83:ESR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LAMA4:ESR1}	39725835	NA	0	35	10	36
P-0024088-T01-IM6	SOMATIC	CHKA	NSD1	11	5	67861119	176678820	Intron of CHKA(-):3Kb after exon 2	Exon 12 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(5;11)(q35.3;q13.2)(chr5:g.176678820::chr11:g.67861119)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	10	10	9
P-0024088-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76887092	76891520	Intron of ATRX(-):2Kb after exon 19	Exon 16 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.5134+1603_c.4585inv	PRECISE		MANUAL_OK	3to3	-	4428	NA	0	5	10	5
P-0024094-T01-IM6	SOMATIC	MYH9	FGFR2	22	10	36682296	123240418	Intron of MYH9(-):297bp before exon 36	Intron of FGFR2(-):883bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - MYH9 (NM_002473) rearrangement: t(10;22)(q26.13;q12.3)(chr10:g.123240418::chr22:g.36682296)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:MYH9}	0	NA	0	41	10	41
P-0024097-T01-IM6	SOMATIC	TMPRSS2	ZNF577	21	19	42872775	52343327	Intron of TMPRSS2(-):3Kb before exon 2	IGR: 16Kb before ZNF577(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.41;q22.3)(chr19:g.52343327::chr21:g.42872775)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0001117-T01-IM3	SOMATIC	ROS1	EZR	6	6	117650595	159191582	Exon 32 of ROS1(-)	Intron of EZR(-): 214bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) Deletion: c.1090+214_c.5263del	PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (EZR-ROS1)	41540987	NA	0	78	77	95
P-0001233-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29684933	128646455	Intron of EWSR1(+): 158bp after exon 7	Intron of FLI1(+): 4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - FLI1 (NM_002017) Translocation:  t(22;11)(q12.2;q24.3)(c.974+158_c.589+3575)	PRECISE		AUTO_OK	5to3	Protein fusion: out of frame (FLI1-EWSR1)	0	NA	0	5	8	0
P-0001818-T01-IM3	SOMATIC	RAD51C	PPM1D	17	17	56774112	58735694	Exon 3 of RAD51C(+)	Intron of PPM1D(+): 1Kb after exon 5	GRCh37	DELETION	RAD51C (NM_058216) - PPM1D (NM_003620) Deletion :   c.463:RAD51C_c.1260+1492:PPM1Ddel (see note)	PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (RAD51C-PPM1D)	1961582	NA	0	6	14	6
P-0001988-T01-IM3	SOMATIC	BRAF	FAM131B	7	7	140489629	143056615	Intron of BRAF(-): 2Kb before exon 9	Intron of FAM131B(-): 103bp before exon 4	GRCh37	DELETION	FAM131B (NM_001031690) - BRAF (NM_004333) Deletion :  c.175-103:FAM131B_c.1141-2245:BRAFdel	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (FAM131B-BRAF)	2566986	NA	0	5	10	5
P-0002034-T01-IM3	SOMATIC	TSC2	C6orf106	16	6	2138059	34607249	Exon 39 of TSC2(+)	Intron of C6orf106(-): 7Kb after exon 3	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Antisense fusion	0	NA	0	23	39	63
P-0002034-T01-IM3	SOMATIC	TSC2	C6orf106	16	6	2138069	34607215	Exon 39 of TSC2(+)	Intron of C6orf106(-): 7Kb after exon 3	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	5to3	-	0	NA	0	44	76	63
P-0003677-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739003	1808931	Exon 9 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	c.2363:FGFR3 _c.1784:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69928	NA	0	35	63	72
P-0004943-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57488487	57493555	Exon 7 of NAB2(+)	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) reciprocal fusion (NAB2 exons 1-7 with STAT6 exons 15-22) :  c.1561:NAB2_c.1739:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	5068	NA	0	49	107	48
P-0005297-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29684524	128658432	Intron of EWSR1(+): 71bp before exon 7	Intron of FLI1(+): 7Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)  - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 with FLI1 exons 6-9): t(22;11)(22q12.2;11q24.3 )(chr22:g.29684524::chr11:g.128658432)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	43	42	43
P-0006040-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685318	128656157	Intron of EWSR1(+): 543bp after exon 7	Intron of FLI1(+): 4Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(22;11)(q12.2;11q24.3)(chr22:g.29685318::chr11:g.128656157)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	38	25	37
P-0009427-T01-IM5	SOMATIC	NPM1	FGF18	5	5	170833436	170842075	Intron of NPM1(+): 1Kb after exon 9	IGR: 5Kb before FGF18(+)	GRCh37	INVERSION	NPM1 (NM_002520) rearrangement : c.771+1029:NPM1_chr5:g.170842075inv	PRECISE		MANUAL_OK	3to3	-	8639	NA	0	49	54	48
P-0009733-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684112	32416631	Intron of EWSR1(+):482bp before exon 9	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion : t(11;22)(p13;q12.2)(chr11:g.32416631::chr22:g.29684112)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	92	10	92
P-0011466-T01-IM5	SOMATIC	DGKG	BCL6	3	3	185874123	187446230	Intron of DGKG(-): 5Kb after exon 23	Exon 6 of BCL6(-)	GRCh37	DELETION	BCL6 (NM_001706) - DGKG (NM_001346) rearrangement: c.1458:BCL6_c.2277+5269:DGKGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (BCL6-DGKG)	1572107	NA	0	9	11	9
P-0012603-T01-IM5	SOMATIC	PIK3R1	TMEM171	5	5	67592042	72437149	Exon 9 of PIK3R1(+)	IGR: 21Kb before TMEM171(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) Rearrangement :  c.1858:PIK3R1_chr5:g.72437149inv	PRECISE		MANUAL_OK	5to5	-	4845107	NA	0	11	23	11
P-0013453-T01-IM5	SOMATIC	ALK	EML4	2	2	29446597	42543741	Intron of ALK(-): 203bp before exon 20	Intron of EML4(+): 551bp after exon 17	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused in-frame with ALK exons 20-29): c.2056+551:EML4_c.3173-203:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13097144	NA	0	64	81	62
P-0013874-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29688431	128677168	Intron of EWSR1(+): 46bp before exon 10	Intron of FLI1(+): 34bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-11 with FLI1 exons 8-9) : t(11;22)(q24.3;q12.2)(chr11:g.128677168::chr22:g.29688431)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FLI1-EWSR1)	0	NA	0	49	37	27
P-0013926-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55198550	55222491	Intron of EGFR(+):11Kb before exon 2	Intron of EGFR(+):646bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-11429_c.889+646del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	23941	NA	0	4	0	4
P-0014385-T01-IM6	SOMATIC	ALK	EML4	2	2	29447676	42524546	Intron of ALK(-): 651bp after exon 19	Intron of EML4(+): 2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+1890:EML4_c.3172+651:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13076870	NA	0	31	38	31
P-0020463-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683880	128668415	Intron of EWSR1(+):714bp before exon 9	Intron of FLI1(+):7Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128668415::chr22:g.29683880)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	92	10	98
P-0020606-T01-IM6	SOMATIC	TP53	GUCY2D	17	17	7579902	7889977	Exon 2 of TP53(-)	IGR: 16Kb before GUCY2D(+)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.11:TP53_chr17:g.7889977del	PRECISE		MANUAL_OK	3to5	-	310075	NA	0	97	10	124
P-0021068-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683596	128660877	Intron of EWSR1(+):473bp after exon 8	Intron of FLI1(+):9Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128660877::chr22:g.29683596)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	72	10	84
P-0023477-T01-IM6	SOMATIC	SMARCB1	SEZ6L	22	22	24167456	26677149	Exon 7 of SMARCB1(+)	Intron of SEZ6L(+):11Kb before exon 2	GRCh37	DELETION	SMARCB1 (NM_003073) - SEZ6L (NM_021115) rearrangement: c.840:SMARCB1_c.95-11223:SEZ6Ldel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCB1:SEZ6L}	2509693	NA	0	30	10	34
P-0023586-T01-IM6	SOMATIC	AMPH	EGFR	7	7	38654621	55269976	Intron of AMPH(-):16Kb after exon 1	Intron of EGFR(+):233bp before exon 27	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.69+16262:AMPH_c.3163-234:EGFRdel	PRECISE		MANUAL_OK	3to5	-	16615355	NA	0	8	10	8
P-0023599-T01-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	50483319	50484120	Intron of SMARCD1(+):347bp before exon 7	Exon 8 of SMARCD1(+)	GRCh37	DELETION	SMARCD1 (NM_003076) Rearrangement : c.772-348_c.970del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	801	NA	0	13	0	18
P-0000521-T01-IM3	SOMATIC	MLL3	PAXIP1	7	7	151879362	154767254	Exon 36 of MLL3(-)	Intron of PAXIP1(-): 152bp after exon 6	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (PAXIP1-MLL3)	2887892	NA	0	63	69	78
P-0000564-T01-IM3	SOMATIC	EWSR1	WT1	22	11	29683809	32416074	Intron of EWSR1(+): 686bp after exon 6	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - WT1 (NM_024426) Translocation:  t(22;11)(q12.2;p13)(chr22:c.793+686::chr11:c.1249+1729)	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	7	10	7
P-0001055-T02-IM5	SOMATIC	NAB2	STAT6	12	12	57487938	57493208	Intron of NAB2(+): 457bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exon 6 fused with STAT6 exon16) : c.1469-457:NAB2_c.1760:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	5270	NA	0	29	42	29
P-0001737-T01-IM3	SOMATIC	VCL	ALK	10	2	75866502	29447390	Intron of VCL(+): 486bp before exon 17	Intron of ALK(-): 937bp after exon 19	GRCh37	TRANSLOCATION	VCL (NM_014000) - ALK (NM_004304) Translocation :  t(10;2)(q22.2;p23.2)(chr10:c.2435-486::chr2:c.3172+937)	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (VCL-ALK)	0	NA	0	78	69	129
P-0002408-T02-IM5	SOMATIC	ALK	EML4	2	2	29448053	42544452	Intron of ALK(-): 274bp after exon 19	Intron of EML4(+): 115bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fuses with ALK exons 20-29) : c.2057-115:EML4_c.3172+274:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13096399	NA	0	7	14	7
P-0002978-T03-IM5	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1 to 5 fused to NTRK3 exons 15 to 20) : t(12;15)(p13.2;q25.3)(chr12:g.12028576::chr15:g.88506571)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	71	21	71
P-0003626-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39879241	42867148	Intron of ERG(-): 62Kb before exon 4	Intron of TMPRSS2(-): 643bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 3 fuses with ERG exons 4-10): c.127-643:ERG_c.40-61697:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2987907	NA	0	89	57	95
P-0004071-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683168	32416482	Intron of EWSR1(+): 45bp after exon 6	Intron of WT1(-): 1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)- WT1 (NM_024426) Fusion (EWSR1 exon 8 fused with WT1 exon 8) : t(22;11) (q12.2;p13) (chr22:g.29683168::chr11:g.32416482)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	36	53	34
P-0004498-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29688226	128674058	Intron of EWSR1(+): 68bp after exon 9	Intron of FLI1(+): 1Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) reciprocal fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(11;22)(11q24.3;22q12.3)(chr11:g.128674058::chr22:g.29688226)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	14	18	14
P-0004816-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39865199	42873903	Intron of ERG(-): 5Kb after exon 1	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fuses with ERG exons 2-10): c.56-3787:TMPRSS2_c.39+54953:ERGdel.	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3008704	NA	0	14	30	14
P-0004842-T01-IM5	SOMATIC	BAP1	PBRM1	3	3	52439439	52642045	Intron of BAP1(-): 129bp before exon 11	Intron of PBRM1(-): 1Kb after exon 17	GRCh37	DELETION	PBRM1(NM_018313) -BAP1 (NM_004656) Rearrangement : c.2567+1284:PBRM1_ c.932-129:BAP1	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (PBRM1-BAP1)	202606	NA	0	6	11	5
P-0004976-T01-IM5	SOMATIC	MDC1	KIFC1	6	6	30676075	33367320	Exon 8 of MDC1(-)	Intron of KIFC1(+): 1Kb after exon 3	GRCh37	DELETION	MDC1 (NM_014641) -  KIFC1 (NM_002263) rearrangement: c.2281:MDC1_c.250+1156:KIFC1del.	PRECISE		MANUAL_OK	3to5	-	2691245	NA	0	102	58	116
P-0005086-T01-IM5	SOMATIC	ROS1	GOPC	6	6	117644378	117886080	Intron of ROS1(-): 1Kb after exon 34	Intron of GOPC(-): 2Kb before exon 9	GRCh37	DELETION	GOPC(NM_020399) -ROS1(NM_002944) - Fusion (GOPC exon 8 fused to ROS1 exon 34 )  : c.1259-1533:GOPC_c.5641+1117:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (GOPC-ROS1)	241702	NA	0	9	29	9
P-0005409-T01-IM5	SOMATIC	TERT	SLC6A3	5	5	1295345	1371874	Promoter of TERT(-): 183bp from tx start	IGR: 21Kb before SLC6A3(-)	GRCh37	DELETION	TERT (NM_198253)  rearrangement: c.-241:TERT_chr5:g.1371874del	PRECISE		MANUAL_OK	3to5	-	76529	NA	0	44	96	43
P-0005601-T01-IM5	SOMATIC	ARF3	MLL2	12	12	49336959	49435986	5-UTR of ARF3(-): 2Kb before coding start	Exon 28 of MLL2(-)	GRCh37	DUPLICATION	ARF3 (NM_001659) - MLL2 (NM_003482) rearrangement : c.-93-1988:ARF3_c.5995:MLL2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ARF3-MLL2)	99027	NA	0	102	149	206
P-0005601-T01-IM5	SOMATIC	BCOR	MLL2	X	12	39931777	49423950	Exon 4 of BCOR(-)	Intron of MLL2(-): 113bp after exon 42	GRCh37	TRANSLOCATION	MLL2 (NM_003482) - BCOR (NM_001123385) rearrangement : t(12;X)(12q13.12;Xp11.4)(chr12:g.49423950::chrX:g.39931777)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MLL2-BCOR)	0	NA	0	102	80	196
P-0005914-T01-IM5	SOMATIC	STK11	STK11	19	19	1217930	1219293	Intron of STK11(+): 486bp before exon 2	Intron of STK11(+): 30bp before exon 3	GRCh37	DELETION	STK11 (NM_000455) rearrangement : c.291-486_375-30del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	1363	NA	0	5	5	5
P-0006024-T01-IM5	SOMATIC	DIRAS3	NOTCH2	1	1	68453977	120459243	IGR: 58Kb before DIRAS3(-)	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) Rearrangement : chr1:g.68453977_c.6102:NOTCH2inv	PRECISE		MANUAL_OK	3to3	-	52005266	NA	0	24	33	23
P-0006307-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14222529	14627674	Intron of PRKACA(-): 2Kb after exon 1	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145)  -  PRKACA: (NM_002730) Fusion (DNAJB1 exons 1 to 2 fused with  PRKACA exons  2 to 10 ) :  c.396:DNAJB1_c.47-4308:PRKACA	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DNAJB1-PRKACA)	405145	NA	0	89	82	87
P-0006313-T01-IM5	SOMATIC	ALK	EML4	2	2	29447966	42544357	Intron of ALK(-): 361bp after exon 19	Intron of EML4(+): 210bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) -ALK (NM_004304) Fusion ( EML4 exons 1 to 18 fused with exons 20 to 29 of ALK )	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13096391	NA	0	55	73	55
P-0006389-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39881711	42873213	Intron of ERG(-): 64Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	ERG (NM_001243432) - TMPRSS2 (NM_001135099) rearrangement : c.40-64167:ERG_c.56-3097:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2991502	NA	0	4	5	4
P-0006506-T01-IM5	SOMATIC	EWSR1	SLC25A37	22	8	29684149	23374303	Intron of EWSR1(+): 446bp before exon 7	IGR: 12Kb before SLC25A37(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(8;22)(p21.2;q12.2) (chr8:g.23374303::chr22:g.29684149)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	18
P-0006893-T01-IM5	SOMATIC	ANKRD11	ANKRD11	16	16	89350932	89361688	Exon 9 of ANKRD11(-)	Intron of ANKRD11(-): 4Kb before exon 5	GRCh37	DUPLICATION	ANKRD11 (NM_013275) rearrangement: c.227-4097_c.2018dup.	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	10756	NA	0	16	26	16
P-0006893-T01-IM5	SOMATIC	DOT1L	LSM7	19	19	2229733	2325450	Intron of DOT1L(+): 51bp before exon 28	Intron of LSM7(-): 1Kb before exon 3	GRCh37	DUPLICATION	DOT1L (NM_032482) - LSM7 (NM_016199) rearrangement: c.4607-51:DOT1L_c.98-1255:LSM7dup	PRECISE		MANUAL_OK	5to3	-	95717	NA	0	86	93	85
P-0007050-T01-IM5	SOMATIC	NTRK1	NTRK1	1	1	156804802	156845113	Intron of NTRK1(+): 7Kb before exon 2	Intron of NTRK1(+): 199bp before exon 12	GRCh37	INVERSION	NTRK1(NM_002529) rearrangement : c.10-7071_c.1355-199inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	40311	NA	0	77	64	75
P-0007050-T01-IM5	SOMATIC	NTRK1	VANGL2	1	1	156845141	160375115	Intron of NTRK1(+): 171bp before exon 12	5-UTR of VANGL2(+): 11Kb before coding start	GRCh37	DUPLICATION	VANGL2 (NM_020335) - NTRK1(NM_002529) rearrangement : c.-191+4456:VANGL2_c.1355-171:NTRK1dup	PRECISE		MANUAL_OK	5to3	Transcript fusion (VANGL2-NTRK1)	3529974	NA	0	59	51	59
P-0007098-T01-IM5	SOMATIC	PIK3CD	SYF2	1	1	9786955	25533354	Intron of PIK3CD(+): 12bp before exon 24	IGR: 15Kb before SYF2(-)	GRCh37	INVERSION	PIK3CD (NM_005026) rearrangement : c.2998-12:PIK3CD_chr1:g.25533354inv	PRECISE		MANUAL_OK	5to5	-	15746399	NA	0	8	34	7
P-0007211-T01-IM5	SOMATIC	ALK	EML4	2	2	29447489	42492036	Intron of ALK(-): 838bp after exon 19	Intron of EML4(+): 165bp after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29) : c.667+165:EML4_c.3172+838:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13044547	NA	0	61	84	61
P-0007341-T03-IM6	SOMATIC	SMARCA4	ZNF791	19	19	11099942	12729256	Intron of SMARCA4(+): 51bp before exon 6	Intron of ZNF791(+): 5Kb before exon 2	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.1119-51:SMARCA4_chr19:g.12729256inv	PRECISE		MANUAL_OK	5to5	-	1629314	NA	0	6	10	6
P-0007341-T03-IM6	SOMATIC	CDYL	DAXX	6	6	4959186	33287744	IGR: 3Kb after CDYL(+)	Intron of DAXX(-): 44bp after exon 5	GRCh37	DELETION	DAXX (NM_001141970) rearrangement: chr6:g.4959186_c.1501+44:DAXXdel	PRECISE		MANUAL_OK	3to5	-	28328558	NA	0	11	17	11
P-0007341-T03-IM6	SOMATIC	C6orf136	TAP1	6	6	30619601	32820832	Intron of C6orf136(+): 358bp after exon 4	Exon 1 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: chr6:g.30619601_c.762:TAP1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	2201231	NA	0	9	21	9
P-0007647-T01-IM5	SOMATIC	TACR3	TET2	4	4	104768006	106164817	IGR: 257Kb before TACR3(-)	Exon 6 of TET2(+)	GRCh37	DUPLICATION	TET2 (NM_001127208) rearrangement: chr4:g.104768006 _c.3685dup	PRECISE		MANUAL_OK	5to3	-	1396811	NA	0	26	31	25
P-0007647-T03-IM5	SOMATIC	TACR3	TET2	4	4	104768006	106164817	IGR: 257Kb before TACR3(-)	Exon 6 of TET2(+)	GRCh37	DUPLICATION	TET2 (NM_001127208) rearrangement: chr4:g.104768006 _c.3685dup	PRECISE		MANUAL_OK	5to3	-	1396811	NA	0	18	35	18
P-0007770-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39911982	42869589	Intron of ERG(-): 36Kb after exon 3	Intron of TMPRSS2(-): 457bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion (TMPRSS2 exon 1-2 fused with ERG exons 4-11) : c.126+457:TMPRSS2_c.39+35604:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2957607	NA	0	59	43	49
P-0007785-T01-IM5	SOMATIC	ZFHX3	HTA	16	16	72828587	73327842	Exon 9 of ZFHX3(-)	IGR: 202Kb before HTA(+)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : c.7994:ZFHX3_chr16:g.73327842del	PRECISE		MANUAL_OK	3to5	-	499255	NA	0	17	60	17
P-0008147-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875566	42874297	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) c.56-4181:TMPRSS2_c.40-58022:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2998731	NA	0	3	6	3
P-0008537-T01-IM5	SOMATIC	AKAP4	KDM5C	X	X	49901746	53243876	IGR: 54Kb before AKAP4(-)	Exon 8 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.1117_chrX:g.49901746del	PRECISE		MANUAL_OK	3to5	-	3342130	NA	0	10	14	10
P-0008693-T01-IM5	SOMATIC	NRAP	FGFR2	10	10	115382366	123242277	Intron of NRAP(-): 427bp before exon 23	Intron of FGFR2(-): 586bp before exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - NRAP (NM_198060) rearrangement: c.2301+935:FGFR2_c.2458-427:NRAPdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-NRAP)	7859911	NA	0	12	36	12
P-0008955-T03-IM5	SOMATIC	RET	CCDC6	10	10	43611019	61639852	Intron of RET(+): 835bp after exon 11	Intron of CCDC6(-): 26Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+26028:CCDC6_c.2136+835:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18028833	NA	0	22	29	22
P-0009073-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39826049	42873613	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-3497:TMPRSS2_c.40-8505:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3047564	NA	0	5	19	5
P-0009077-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39877498	42870787	Intron of ERG(-): 60Kb before exon 4	Intron of TMPRSS2(-): 671bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-671:TMPRSS2_c.40-59954:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2993289	NA	0	5	12	5
P-0009097-T01-IM5	SOMATIC	KIAA1549	BRAF	7	7	138542048	140488817	Intron of KIAA1549(-): 4Kb after exon 16	Intron of BRAF(-): 1Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused in frame with BRAF exons 9-18, which include the BRAF kinase domain): c.5247+3837:KIAA1549_c.1141-1433:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1946769	NA	0	9	11	8
P-0009359-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683218	32415588	Intron of EWSR1(+): 95bp after exon 6	Intron of WT1(-): 1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-6 fused in frame with WT1 exons 8-10): c.793+95:EWSR1_c.1250-1287:WT1	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	102	69	107
P-0009733-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684112	32416631	Intron of EWSR1(+): 483bp before exon 7	Intron of WT1(-): 1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion : t(11;22)(p13;q12.2)(chr11:g.32416631::chr22:g.29684112)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	30	29	28
P-0010032-T02-IM5	SOMATIC	SDHAF2	SDHAF2	11	11	61200216	61205545	Intron of SDHAF2(+): 3Kb after exon 1	Exon 3 of SDHAF2(+)	GRCh37	DELETION	SDHAF2 (NM_017841) rearrangement: c.36+2562_c.330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5329	NA	0	10	9	10
P-0010674-T01-IM5	SOMATIC	TFE3	ASPSCR1	X	17	48895643	79964348	Intron of TFE3(-): 4bp before exon 5	Intron of ASPSCR1(+): 3Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 with TFE3 exons 5-10) : t(X;17)(p11.23;q25.3)(chrX:g.48895643::chr17:g.79964348)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ASPSCR1-TFE3)	0	NA	0	8	8	8
P-0011134-T01-IM5	SOMATIC	NCOR1	NCOR1	17	17	15965123	15967843	Exon 37 of NCOR1(-)	Intron of NCOR1(-): 341bp after exon 34	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement : c.5101+341_5473del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2720	NA	0	33	26	27
P-0012029-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39831291	42868158	Intron of ERG(-): 14Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.127-1653:TMPRSS2_c.19-13747:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3036867	NA	0	48	73	48
P-0012275-T01-IM5	SOMATIC	TMPRSS2	UTRN	21	6	42869596	145232571	Intron of TMPRSS2(-): 450bp after exon 2	IGR: 58Kb after UTRN(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(q24.2;q22.3)(chr6:g.145232571::chr21:g.42869596)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	33	0	33
P-0012322-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40014626	42872731	5-UTR of ERG(-): 67Kb before coding start	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Rearrangement : c.56-2615:TMPRSS2_c.-150+18956:ERGinv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2858105	NA	0	6	13	5
P-0012454-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683201	32414660	Intron of EWSR1(+): 78bp after exon 6	Intron of WT1(-): 359bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-6 with WT1 exons 8-10) : t(11;22)(11q13;22q12.2)(chr11:g.32414660::chr22:g.32414660)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	63	26	62
P-0012482-T02-IM5	SOMATIC	EWSR1	FLI1	22	11	29684794	128639397	Intron of EWSR1(+): 19bp after exon 7	Intron of FLI1(+): 1Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 fused to FLI1 exons 4-9): t(11;22)(q24.3;q12.2)(chr11:g.128639397::chr22:g.29684794)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	42	62	34
P-0012575-T01-IM5	SOMATIC	KIAA1549	BRAF	7	7	138551928	140490295	Intron of KIAA1549(-): 793bp after exon 15	Intron of BRAF(-): 3Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-15 with BRAF exons 9-18): c.4929+793:KIAA1549_c.1141-2911:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1938367	NA	0	9	24	9
P-0012721-T01-IM5	SOMATIC	EWSR1	PATZ1	22	22	29687335	31740585	Intron of EWSR1(+): 216bp before exon 8	Exon 1 of PATZ1(-)	GRCh37	INVERSION	EWSR1 (NM_013986) - PATZ1 (NM_014323)  fusion (EWSR1 exons 1-9 with PATZ1 exons 1-5): c.794-791:EWSR1_c.1004:PATZ1inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EWSR1-PATZ1)	2053250	NA	0	69	74	67
P-0013023-T01-IM5	SOMATIC	RET	CCDC6	10	10	43611810	61630364	Intron of RET(+): 222bp before exon 12	Intron of CCDC6(-): 18Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-17904:CCDC6_c.2137-222:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18018554	NA	0	8	44	8
P-0013757-T01-IM5	SOMATIC	KDM5C	PAK7	X	20	53230974	9550274	Intron of KDM5C(-): 48bp before exon 14	Intron of PAK7(-): 3Kb before exon 6	GRCh37	TRANSLOCATION	KDM5C (NM_004187) - PAK7 (NM_177990) Rearrangement : t(X;20)(p11.22;p12.2)(chrX:g.53230974::chr20:g.9550274)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KDM5C-PAK7)	0	NA	0	102	0	132
P-0013757-T01-IM5	SOMATIC	GATA1	RRAGB	X	X	48649737	55868670	Intron of GATA1(+): 1bp after exon 2	IGR: 125Kb before RRAGB(+)	GRCh37	DELETION	GATA1 (NM_002049) Rearrangement : c.220+1:GATA1_chrX:g.55868670del	PRECISE		MANUAL_OK	3to5	-	7218933	NA	0	86	120	83
P-0013757-T01-IM5	SOMATIC	ATRX	DIAPH2	X	X	76937850	97337448	Exon 9 of ATRX(-)	IGR: 482Kb after DIAPH2(+)	GRCh37	INVERSION	ATRX (NM_000489) Rearrangement : c.2898:ATRX_chrX:g.97337448inv	PRECISE		MANUAL_OK	5to5	-	20399598	NA	0	64	94	59
P-0013777-T01-IM5	SOMATIC	KIAA1549	BRAF	7	7	138539749	140481674	Intron of KIAA1549(-): 3Kb before exon 17	Intron of BRAF(-): 181bp before exon 11	GRCh37	DUPLICATION	KIAA1549(NM_001164665) - BRAF (NM_004333) rearrangement: c.5248-2734:KIAA1549_c.1315-181:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1941925	NA	0	22	25	22
P-0013791-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39882496	42869530	Intron of ERG(-): 65Kb before exon 4	Intron of TMPRSS2(-): 516bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11) : c.126+516:TMPRSS2_c.40-64952:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2987034	NA	0	4	8	4
P-0013858-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39898179	42875532	Intron of ERG(-): 49Kb after exon 3	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099)   rearrangement: c.39+49407:ERG_c.55+4345:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2977353	NA	0	3	11	3
P-0014185-T01-IM6	SOMATIC	BRD4	NOP10	19	15	15364343	34635713	Intron of BRD4(-): 620bp after exon 11	Promoter of NOP10(-): 351bp from tx start	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - NUT (NM_175741) rearrangement: t(15;19)(q14;p13.12)(chr15:g.34635713::chr19:g.5364343)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	102	59	124
P-0014270-T01-IM6	SOMATIC	ALK	EML4	2	2	29446679	42494165	Intron of ALK(-): 285bp before exon 20	Intron of EML4(+): 2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused in-frame to ALK exons 20-29) : c.667+2294:EML4_c.3173-285:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13047486	NA	0	24	38	23
P-0014381-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138548284	140492888	Intron of KIAA1549(-): 2Kb before exon 16	Intron of BRAF(-): 1Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-15 fused to BRAF exon 9 -18): c.4930-2082:KIAA1549_c.1140+1220:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1944604	NA	0	37	45	37
P-0015004-T01-IM6	SOMATIC	NTRK1	RABGAP1L	1	1	156844972	174831692	Intron of NTRK1(+): 172bp after exon 11	Intron of RABGAP1L(+): 51Kb after exon 19	GRCh37	DELETION	NTRK1 (NM_002529) - RABGAP1L (NM_014857) rearrangement: c.1354+172:NTRK1_c.2340+50594:RABGAP1Ldel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (NTRK1-RABGAP1L)	17986720	NA	0	26	29	26
P-0015034-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68857495	68861543	Exon 13 of CDH1(+)	Intron of CDH1(+): 534bp before exon 14	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.2130_c.2165-534del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4048	NA	0	102	79	115
P-0020930-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271199	38277154	Exon 19 of FGFR1(-)	Exon 10 of FGFR1(-)	GRCh37	DUPLICATION	FGFR (NM_001174067) rearrangement: c.2509_c.1274dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5955	NA	0	136	10	154
P-0020959-T01-IM6	SOMATIC	CIC	CIC	19	19	42797863	42799194	Exon 16 of CIC(+)	Exon 20 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3915_c.4678inv	PRECISE		MANUAL_OK	5to5	-	1331	NA	0	2	9	2
P-0021257-T01-IM6	SOMATIC	ALK	EML4	2	2	29447777	42543971	Intron of ALK(-):549bp after exon 19	Intron of EML4(+):595bp before exon 18	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-17 fused with ALK exons 20-29): c.1883-596:EML4_c.3172+550:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13096194	NA	0	21	10	21
P-0021892-T01-IM6	SOMATIC	CNTN4	VHL	3	3	2760147	10188165	Intron of CNTN4(+):18Kb before exon 4	Intron of VHL(+):32bp before exon 2	GRCh37	INVERSION	VHL (NM_000551) rearrangement : g.2760147_c.341-33inv	PRECISE		MANUAL_OK	5to5	-	7428018	NA	0	10	10	11
P-0021908-T01-IM6	SOMATIC	NOTCH3	GABRB2	19	5	15299881	160948114	Exon 8 of NOTCH3(-)	Intron of GABRB2(-):24Kb after exon 4	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(5,19)(q34,p13.2)(chr5:g.160948114::chr19:g.15299881)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	27	10	29
P-0021924-T01-IM6	SOMATIC	PALB2	LRP1B	16	2	23652478	141570009	Exon 1 of PALB2(-)	Intron of LRP1B(-):1Kb after exon 32	GRCh37	TRANSLOCATION	PALB2 (NM_024675) - LRP1B (NM_018557) rearrangement: t(2;16)(q22.1;p12.2)(chr2:g.141570009::chr16:g.23652478)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	30	10	51
P-0021924-T01-IM6	SOMATIC	LINC01554	FAT1	5	4	95189699	187525213	5-UTR of LINC01554(+):6Kb before coding start	Intron of FAT1(-):82bp before exon 19	GRCh37	TRANSLOCATION	FAT1 (NM_005245) rearrangement: t(4;5)(q35.2;q15)(chr4:g.187525213::chr5:g.95189699)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	5
P-0022234-T01-IM6	SOMATIC	EWSR1	ERG	22	21	29684131	39765529	Intron of EWSR1(+):463bp before exon 9	Intron of ERG(-):1Kb before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion (EWSR1 exons 1-8 fused with ERG exons 7-10) : t(21;22)(q22.2;q12.2)(chr21:g.39765529::chr22:g.29684131)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	70	10	70
P-0022404-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138539285	140482177	Intron of KIAA1549(-):2Kb before exon 17	Intron of BRAF(-):643bp after exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused with BRAF exons 11-18) : c.5248-2270:KIAA1549_c.1314+644:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1942892	NA	0	95	10	107
P-0022406-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42834909	42842636	Promoter of TMPRSS2(-):2Kb from tx start	Exon 11 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.1221_c.*3160del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7727	NA	0	23	10	38
P-0022452-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688410	128672031	Intron of EWSR1(+):66bp before exon 12	Intron of FLI1(+):3Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1- 11 fused to FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128672031::chr22:g.29688410)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	116	10	114
P-0022486-T01-IM6	SOMATIC	CDK4	MIR5700	12	12	58144504	94954944	Exon 5 of CDK4(-)	Promoter of MIR5700(+):620bp from tx start	GRCh37	DELETION	CDK4 (NM_000075) rearrangement: c.567_chr12:g.94954944del	PRECISE		MANUAL_OK	3to5	-	36810440	NA	0	26	10	27
P-0023563-T01-IM6	SOMATIC	TFE3	PRCC	X	1	48896330	156751854	Intron of TFE3(-):301bp after exon 3	Intron of PRCC(+):219bp before exon 2	GRCh37	TRANSLOCATION	PRCC (NM_005973) - TFE3 (NM_006521) fusion (PRCC exon 1 fused to TFE3 exons 4-10): t(1;X)(q23.1;p11.23)(chr1:g.156751854::chrX:g.48896330)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PRCC:TFE3}	0	NA	0	28	10	28
P-0024054-T01-IM6	SOMATIC	APC	APC	5	5	112174402	112182580	Exon 16 of APC(+)	Promoter of APC(+):109Kb from tx start	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.3111_c.*2757del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8178	NA	0	7	10	8
P-0024065-T01-IM6	SOMATIC	SLC4A7	MLH1	3	3	27506127	37090330	Intron of SLC4A7(-):12Kb before exon 2	Intron of MLH1(+):64bp before exon 18	GRCh37	INVERSION	SLC4A7 (NM_003615) - MLH1 (NM_000249) Rearrangement : c.61-12138:SLC4A7_c.1990-65:MLH1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SLC4A7:MLH1}	9584203	NA	0	4	6	4
P-0024120-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123239356	123318340	3-UTR of FGFR2(-):14bp after coding stop	Intron of FGFR2(-):6Kb after exon 4	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.454+5676_c.*15inv	PRECISE		MANUAL_OK	5to5	-	78984	NA	0	15	10	16
P-0000474-T01-IM3	SOMATIC	ALK	EML4	2	2	29447002	42497097	Intron of ALK(-): 608bp before exon 20	Intron of EML4(+): 5Kb after exon 5	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13050095	NA	0	16	26	14
P-0000913-T04-IM6	SOMATIC	SPINT2	AXL	19	19	38751353	41726610	IGR: 4Kb before SPINT2(+)	Exon 2 of AXL(+)	GRCh37	INVERSION	AXL (NM_021913) Rearrangement : chr19:g.38751353_c.155:AXLinv	PRECISE		MANUAL_OK	5to5	-	2975257	NA	0	8	8	8
P-0000913-T04-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55131118	55140028	Exon 5 of PDGFRA(+)	Intron of PDGFRA(+):131bp after exon 10	GRCh37	INVERSION	PDGFRA (NM_006206) Rearrangement : c.661_c.1558+131del	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8910	NA	0	13	10	12
P-0001745-T02-IM5	SOMATIC	RET	CCDC6	10	10	43611245	61621918	Intron of RET(+): 787bp before exon 12	Intron of CCDC6(-): 9Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - (RET (NM_020975) rearrangement: c.304-9458:CCDC6_c.2137-787:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18010673	NA	0	3	10	3
P-0001876-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39810725	42870613	Intron of ERG(-): 7Kb after exon 4	Intron of TMPRSS2(-): 497bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (Exon 1 of TMPRSS2 fused to exons 5-10 of ERG): c.236+6602:ERG_c.56-497:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3059888	NA	0	5	12	5
P-0002024-T01-IM3	SOMATIC	ALK	EML4	2	2	29447133	42552725	Intron of ALK(-): 739bp before exon 20	Intron of EML4(+): 31bp after exon 19	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) inversion:   c.2242+31:EML4_c.3173-739:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13105592	NA	0	6	19	5
P-0002583-T01-IM3	SOMATIC	TMPRSS2	TMPRSS2	21	21	42838033	42875108	3-UTR of TMPRSS2(-): 36bp after coding stop	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	37075	NA	0	14	23	13
P-0002660-T01-IM3	SOMATIC	CDC73	CDC73	1	1	193117017	193119181	Exon 8 of CDC73(+)	Intron of CDC73(+): 253bp before exon 9	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2164	NA	0	11	12	12
P-0003294-T02-IM5	SOMATIC	CDH11	CBFB	16	16	63947171	67100773	IGR: 1Mb before CDH11(-)	Intron of CBFB(+): 72bp after exon 4	GRCh37	INVERSION	CBFB (NM_022845) rearrangement : chr16:g.63947171_c.399+72:CBFBinv	PRECISE		MANUAL_OK	3to3	-	3153602	NA	0	13	15	13
P-0003294-T02-IM5	SOMATIC	ERG	PDE1C	21	7	39817322	32062232	Intron of ERG(-): 5bp after exon 4	Intron of PDE1C(-): 29Kb after exon 3	GRCh37	TRANSLOCATION	PEDE1C (NM_001191058) - ERG (NM_004449) rearrangement : t(7;21)(p14.3;q22.2)(chr7:g.32062232::chr21:g.39817322)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	24	30	23
P-0003689-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39869571	42877684	Intron of ERG(-): 716bp after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	c.55+2193:TMPRSS2_c.18+716:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3008113	NA	0	6	7	6
P-0003874-T01-IM5	SOMATIC	SMARCA4	SLITRK5	19	13	11137036	88339972	Intron of SMARCA4(+): 14bp after exon 22	IGR: 15Kb before SLITRK5(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(19,13)(19p13.2:13q31.2) (chr19:g.11137036::chr13g.88339972)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	48	76	95
P-0004774-T01-IM5	SOMATIC	NCOR1	GALK2	17	15	16040646	49477846	Exon 14 of NCOR1(-)	Intron of GALK2(+): 15Kb after exon 1	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - GALK2 (NM_002044) Rearrrangement : t(17;15)(17p11.2;15q21.1)(chr17:g.16040646:chr15:g.49477846)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (NCOR1-GALK2)	0	NA	0	40	22	39
P-0005081-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39853523	42875471	Intron of ERG(-): 17Kb after exon 1	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Rearrangement :  c.55+4406:TMPRSS2_c.18+16764:ERGinv	PRECISE		MANUAL_OK	5to5	Antisense fusion	3021948	NA	0	12	36	12
P-0005557-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834483	42873926	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-3810:TMPRSS2_c.19-16939:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3039443	NA	0	4	12	4
P-0005834-T01-IM5	SOMATIC	CCDC6	BRAF	10	7	61627617	140488401	Intron of CCDC6(-): 15Kb before exon 2	Intron of BRAF(-): 1Kb before exon 9	GRCh37	TRANSLOCATION	CCDC6 (NM_005436) -BRAF (NM_004333) Rearrangement :  t(10;7)(chr10q21.2;q34)(chr10:g.61627617::chr7:g.140488401)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (CCDC6-BRAF)	0	NA	0	23	0	22
P-0005977-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685512	128658321	Intron of EWSR1(+): 737bp after exon 7	Intron of FLI1(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(22;11)(q12.2;11q24.3)(chr22:g.29685512::chr11:g.128658321)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	11	17	9
P-0008543-T01-IM5	SOMATIC	NCOA3	MAPKAPK2	20	1	46256261	206845821	Intron of NCOA3(+): 44bp before exon 7	IGR: 12Kb before MAPKAPK2(+)	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) Rearrangement : t(1;20)(1q32.1;20q13.12)(chr1:g.206845821::chr20:g.46256261)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	29	0	27
P-0008695-T03-IM6	SOMATIC	TP53	EIF5	17	14	7577159	103799131	Intron of TP53(-):4bp before exon 8	Promoter of EIF5(+):1Kb from tx start	GRCh37	TRANSLOCATION	EIF5 (NM_001969) - TP53 (NM_000546) rearrangement: t(14;17)(q32.32;p13.1)(chr14:g.103799131::chr17:g.7577159)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EIF5:TP53}	0	NA	0	268	10	267
P-0008695-T03-IM6	SOMATIC	MITF	MIR4444-1	3	3	69998105	75341861	Intron of MITF(+):96bp before exon 6	IGR: 78Kb before MIR4444-1(+)	GRCh37	INVERSION	MITF (NM_198159) rearrangement:c.763-97_chr3:g.75341861inv	PRECISE		MANUAL_OK	5to5	-	5343756	NA	0	9	10	13
P-0009043-T01-IM5	SOMATIC	PLCG2	PALM2-AKAP2	16	9	81914466	112654851	Intron of PLCG2(+): 49bp before exon 8	Intron of PALM2-AKAP2(+): 12Kb after exon 3	GRCh37	TRANSLOCATION	PALM2-AKAP2 (NM_007203) - PLCG2 (NM_002661) Rearrangement : t(9;16)(9q31.3;16q23.3)(chr9:g.112654851::chr16:g.81914466 )	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (PALM2-AKAP2-PLCG2)	0	NA	0	16	0	16
P-0009241-T01-IM5	SOMATIC	ALK	EML4	2	2	29446533	42528304	Intron of ALK(-): 139bp before exon 20	Intron of EML4(+): 77bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons 20-29) : c.1490-77:EML4_c.3173-139:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13081771	NA	0	14	2	9
P-0009452-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683902	32417286	Intron of EWSR1(+): 693bp before exon 7	Intron of WT1(-): 517bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:32417286::chr22:29683902 )	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	20	8	14
P-0009536-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39904279	42877920	Intron of ERG(-): 43Kb after exon 3	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused with ERG exons 4-11)   :  c.55+1957:TMPRSS2_c.39+43307:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2973641	NA	0	8	7	8
P-0010101-T01-IM5	SOMATIC	POLE	LYG2	12	2	133234102	99863779	Intron of POLE(-): 87bp before exon 28	Intron of LYG2(-): 496bp before exon 3	GRCh37	TRANSLOCATION	LYG2 (NM_175735) - POLE (NM_006231) rearrangement: t(2;12)(q11.2;q24.33)(chr2:g.99863779::chr12:g.133234102)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (LYG2-POLE)	0	NA	0	18	17	17
P-0010101-T01-IM5	SOMATIC	NETO1	ROS1	18	6	70464373	117629953	Intron of NETO1(-): 3Kb before exon 5	Intron of ROS1(-): 4bp after exon 41	GRCh37	TRANSLOCATION	NETO1 (NM_001201465) - ROS1 (NM_002944) rearrangement: t(6;18)(q22.1;q22.3)(chr6:g.117629953::chr18:g.70464373)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	48	32	47
P-0010101-T01-IM5	SOMATIC	ROS1	SLC4A10	6	2	117642410	162412826	Intron of ROS1(-): 12bp after exon 35	IGR: 68Kb before SLC4A10(+)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(2;6)(q24.2;q22.1)(chr2:g.162412826::chr6:g.117642410)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	102	153	186
P-0010403-T02-IM6	SOMATIC	IFNA22P	CDKN2B	9	9	21269616	22006143	IGR: 8Kb before IFNA22P(-)	Exon 2 of CDKN2B(-)	GRCh37	INVERSION	CDKN2B (NM_004936) Rearrangement : chr9:g.21269616_c.260:CDKN2Binv	PRECISE		MANUAL_OK	5to5	-	736527	NA	0	12	10	17
P-0010628-T01-IM5	SOMATIC	NTRK1	IRF2BP2	1	1	156844224	234744293	Intron of NTRK1(+): 32bp after exon 9	Exon 1 of IRF2BP2(-)	GRCh37	INVERSION	IRF2BP2 (NM_001077397) - NTRK1 (NM_002529) rearrangement : c.948:IRF2BP2_1195+32:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (IRF2BP2-NTRK1)	77900069	NA	0	11	14	10
P-0011035-T01-IM5	SOMATIC	KIF5B	RET	10	10	32314260	43611322	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 710bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused with RET exons 12-20) : c.1726-2296:KIF5B_c.2137-710:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297062	NA	0	25	37	24
P-0011472-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860707	42872511	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (exon 1 of TMPRSS2 with exons 2-10 of ERG): c.56-2395:TMPRSS2_c.18+9580:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3011804	NA	0	42	62	42
P-0012131-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29683265	128663970	Intron of EWSR1(+): 142bp after exon 6	Intron of FLI1(+): 11Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion : t(11;22)(q24.3 ;q12.2)(chr11:g.128663970::chr22:g.29683265 )	IMPRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	8	0	8
P-0012776-T01-IM5	SOMATIC	TP53	KDM6B	17	17	7579753	7750392	Intron of TP53(-): 32bp before exon 3	Intron of KDM6B(+): 31bp before exon 10	GRCh37	DELETION	TP53 (NM_000546) rearrangement: chr17:g.7750392_c.75-32del	PRECISE		MANUAL_OK	3to5	-	170639	NA	0	40	66	39
P-0013221-T01-IM5	SOMATIC	MLL	PHC2	11	1	118342886	33801002	Exon 3 of MLL(+)	Intron of PHC2(-): 1Kb before exon 9	GRCh37	TRANSLOCATION	MLL (NM_001197104) - PHC2 (NM_198040) rearrangement: t(1;11)(p35.1;q23.3)(chr1:g.33801002::chr11:g.118342886)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MLL-PHC2)	0	NA	0	60	44	59
P-0013919-T01-IM5	SOMATIC	MET	MET	7	7	116411743	116413753	Intron of MET(+): 35bp after exon 13	Intron of MET(+): 1Kb before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2887+35_c.3029-1182del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2010	NA	0	40	39	38
P-0014876-T01-IM6	SOMATIC	TSC2	C12orf64	16	12	2104408	80592188	Exon 5 of TSC2(+)	IGR: 11Kb before C12orf64(+)	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(12;16)(q21.31;p13.3)(chr12:g.80592188::chr16:g.2104408)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	30	25
P-0017486-T02-IM6	SOMATIC	ELF3	LGR6	1	1	201982395	202167995	Exon 7 of ELF3(+)	Intron of LGR6(+):5Kb after exon 1	GRCh37	DUPLICATION	LGR6 (NM_001017403) - ELF3 (NM_004433) Rearrangement : c.212+4666:LGR6_c.774:ELF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LGR6:ELF3}	185600	NA	0	40	10	44
P-0018588-T02-IM6	SOMATIC	DAXX	GRM4	6	6	33286511	34097868	3-UTR of DAXX(-):8bp after coding stop	Intron of GRM4(-):3Kb after exon 2	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.*9:DAXX_chr6:g.34097868inv	PRECISE		MANUAL_OK	5to5	-	811357	NA	0	9	6	10
P-0020783-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683675	32415367	Intron of EWSR1(+):552bp after exon 8	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10 ): t(11;22)(p13;q12.2)(chr11:g.:32415367::chr22:g.29683675)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	96	10	96
P-0020925-T01-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48893260	79964362	Intron of TFE3(-):1Kb before exon 6	Intron of ASPSCR1(+):3Kb before exon 8	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - ASPSCR1 (NM_001251888) Fusion (TFE3 exons 1-5 fused with ASPSCR1 exons 8-17): t(X,17)(p11.23,q25.3)(chrX:g.48893260::chr17:g.79964362)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TFE3:ASPSCR1}	0	NA	0	16	10	21
P-0021915-T01-IM6	SOMATIC	PHF14	ARID1A	7	1	11032042	27101386	Intron of PHF14(+):2Kb after exon 4	Exon 18 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) - PHF14 (NM_014660) rearrangement: t(1,7)(p36.11,p21.3)(chr1:g.27101386::chr7:g.11032042)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARID1A:PHF14}	0	NA	0	6	10	8
P-0021981-T01-IM6	SOMATIC	EWSR1	ERG	22	21	29683558	39759195	Intron of EWSR1(+):435bp after exon 8	Intron of ERG(-):3Kb before exon 10	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion (EWSR1 exons 1-8 fused to ERG exon 10): t(21;22)(q22.2;q12.2)(chr21:g.39759195::chr22:g.29683558)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	58	10	57
P-0022823-T01-IM6	SOMATIC	NAB2	LRP1	12	12	57486965	57510022	Exon 5 of NAB2(+)	IGR: 12Kb before LRP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1263:NAB2_c.-5132:STAT6inv	PRECISE		MANUAL_OK	3to3	-	23057	NA	0	66	10	66
P-0024225-T01-IM6	SOMATIC	KIF5B	RET	10	10	32305017	43609110	Intron of KIF5B(-):430bp before exon 25	Exon 10 of RET(+)	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-24 fused to RET exons 10-20): c.2762-430:KIF5B_c.1866:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:RET}	11304093	NA	0	46	10	57
P-0024225-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	40899116	41729844	Intron of PTPRT(-):23bp before exon 14	Intron of PTPRT(-):88Kb after exon 1	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.2177-23_c.88+88442inv	PRECISE		MANUAL_OK	3to3	-	830728	NA	0	15	10	18
P-0024227-T01-IM6	SOMATIC	BRAF	AGK	7	7	140495070	141272163	Intron of BRAF(-):803bp before exon 8	Intron of AGK(+):17Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) rearrangement: c.101+16796:AGK_c.981-803:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	777093	NA	0	129	10	128
P-0024243-T01-IM6	SOMATIC	ATM	ATM	11	11	108158670	108160425	Intron of ATM(+):228bp after exon 27	Exon 29 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.4109+228_c.4333del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1755	NA	0	26	10	26
P-0024243-T01-IM6	SOMATIC	PBK	PRDM1	8	6	27696344	106555205	Promoter of PBK(-):29Kb from tx start	Exon 7 of PRDM1(+)	GRCh37	TRANSLOCATION	PRDM1 (NM_001198) rearrangement: t(6;8)(q21;p21.1)(chr6:g.106555205::chr8:g.27696344)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PBK:PRDM1}	0	NA	0	10	10	15
P-0024249-T01-IM6	SOMATIC	TCF7L2	HABP2	10	10	114917851	115014274	Intron of TCF7L2(+):23bp after exon 12	IGR: 296Kb before HABP2(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.1318+23_chr10:g.115014274del	PRECISE		MANUAL_OK	3to5	-	96423	NA	0	23	10	23
P-0024249-T01-IM6	SOMATIC	CHMP1A	IRS2	16	13	89721445	110437384	Intron of CHMP1A(-):1Kb before exon 2	Exon 1 of IRS2(-)	GRCh37	TRANSLOCATION	IRS2 (NM_003749) - CHMP1A (NM_002768) rearrangement: t(13;16)(q34;q24.3)(chr13:g.110437384::chr16:g.89721445)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {IRS2:CHMP1A}	0	NA	0	9	0	10
P-0024249-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890681	42870724	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):608bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion ( TMPRSS2 exon 1 fused to ERG exons 4 -11): c.56-608:TMPRSS2_c.39+56905:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2980043	NA	0	100	0	105
P-0024251-T01-IM6	SOMATIC	FSCB	SYK	14	9	44311824	93636564	IGR: 662Kb before FSCB(-)	Exon 8 of SYK(+)	GRCh37	TRANSLOCATION	SYK (NM_003177) rearrangement: t(9;14)(q22.2;q21.2)(chr9:g.93636564::chr14:g.44311824)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	45	10	45
P-0024264-T01-IM6	SOMATIC	ESYT1	TET1	12	10	56520762	70405130	Promoter of ESYT1(+):1Kb from tx start	Exon 4 of TET1(+)	GRCh37	TRANSLOCATION	TET1 (NM_030625) - ESYT1 (NM_015292) Rearrangement : t(10;12)(q21.3;q13.13)(chr10:g.70405130::chr12:g. :56520762)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TET1:ESYT1}	0	NA	0	131	10	154
P-0024266-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206653952	206659574	Intron of IKBKE(+):76bp after exon 13	Intron of IKBKE(+):931bp after exon 15	GRCh37	DELETION	IKBKE (NM_014002) Rearrangement : c.1427+76_c.1616+931del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5622	NA	0	24	10	27
P-0024266-T01-IM6	SOMATIC	MGA	MGA	15	15	42034324	42052533	Intron of MGA(+):419bp before exon 15	Exon 20 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) Rearrangement : c.4586-420_c.7204del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18209	NA	0	48	10	49
P-0002217-T02-IM3	SOMATIC	ALK	EML4	2	2	29446594	42523244	Intron of ALK(-): 200bp before exon 20	Intron of EML4(+): 588bp after exon 12	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13076650	NA	0	16	26	16
P-0003208-T01-IM5	SOMATIC	MAST3	PIK3R2	19	19	18261614	18273074	3-UTR of MAST3(+): 1Kb after coding stop	Exon 8 of PIK3R2(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	11460	NA	0	17	34	17
P-0004345-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39863561	42870767	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 651bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10) : c.56-651:TMPRSS2_c.18+6726:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3007206	NA	0	9	12	9
P-0004532-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884321	42869942	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 104bp after exon 2	GRCh37	DELETION	TMPRSS2-ERG Fusion (TMPRSS2 exon 2 fused to ERG exon 4) :  c.126+104:TMPRSS2_c.39+63265:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2985621	NA	0	11	28	11
P-0005321-T01-IM5	SOMATIC	ALK	EML4	2	2	29448250	42528243	Intron of ALK(-): 77bp after exon 19	Intron of EML4(+): 138bp before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304)  Fusion (EML4 exon 13 fused with ALK exon 20) :  c.2068+156:EML4_c.3173-693:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13079993	NA	0	75	62	72
P-0005710-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29688442	32417704	Intron of EWSR1(+): 35bp before exon 10	Intron of WT1(-): 99bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-11 with WT1 exons 8-10) : t(22;11)(q12.2;p13)(chr22:g.29688442::chr11g.32417704)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	20	23	19
P-0006274-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683660	32414685	Intron of EWSR1(+): 537bp after exon 6	Intron of WT1(-): 384bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_001163287) - WT1 (NM_024426) Fusion ( EWSR1 exon 7 fused with WT1 exon 8) :  t(22;11)(chr22q12.2;chr11p13)(chr22:g.29683660::chr11:g.32414685)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	29	21	29
P-0006689-T01-IM5	SOMATIC	PIK3C2G	KIAA0947	12	5	18552720	5556235	Exon 15 of PIK3C2G(+)	IGR: 133Kb before KIAA0947(+)	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement : t(5;12)(p15.32;p12.3)(chr5:g.5556235::chr12:g.18552720)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	33	29	33
P-0006689-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39849260	42867220	Intron of ERG(-): 21Kb after exon 1	Intron of TMPRSS2(-): 715bp before exon 3	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement :  c.40-31716:ERG_c.127-715:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3017960	NA	0	21	24	21
P-0006689-T01-IM5	SOMATIC	TMPRSS2	MLLT4	21	6	42875775	168293792	Intron of TMPRSS2(-): 4Kb after exon 1	Intron of MLLT4(+): 750bp before exon 9	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - MLLT4 (NM_001207008) rearrangement : t(6;21)(q27;q22.3)(chr6:168293792::chr21:42875775)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (TMPRSS2-MLLT4)	0	NA	0	15	27	14
P-0007772-T02-IM5	SOMATIC	NTRK3	ETV6	15	12	88600844	12020258	Intron of NTRK3(-): 25Kb before exon 13	Intron of ETV6(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) reciprocal fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20) : t(12;15)(p13.2;q25.3)(chr12:g.12020257::chr15:g.88600844 )	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (NTRK3-ETV6)	0	NA	0	7	17	7
P-0008054-T01-IM5	SOMATIC	EED	FAT3	11	11	85988232	91474496	Intron of EED(+): 52bp after exon 10	IGR: 611Kb before FAT3(+)	GRCh37	DELETION	EED (NM_003797) rearrangement: c.1125+52_chr11:g.91474496del	PRECISE		MANUAL_OK	3to5	-	5486264	NA	0	66	98	66
P-0008731-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29684579	128647421	Intron of EWSR1(+): 16bp before exon 7	Intron of FLI1(+): 4Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FL1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 5-9): t(11;22)(11q24.3;22q12.2)(chr11:g.128647421::chr22:g.29684579)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	7	10	7
P-0011525-T01-IM5	SOMATIC	TMPRSS2	ABCG1	21	21	42852553	43616717	Intron of TMPRSS2(-): 24bp before exon 6	IGR: 3Kb before ABCG1(+)	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement :  c.557-24:TMPRSS2_chr21:g.43616717del	PRECISE		MANUAL_OK	3to5	-	764164	NA	0	5	15	5
P-0012141-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876326	42869787	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 259bp after exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-58782:ERG_c.126+259:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2993461	NA	0	64	67	63
P-0012141-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67582583	67589535	Intron of PIK3R1(+): 6Kb before exon 7	Intron of PIK3R1(+): 2bp before exon 5	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.917-5504_c.1300-2del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: out of frame	6952	NA	0	16	23	16
P-0013038-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39884473	42871598	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement:  c.39+63113:ERG_c.56-1482:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2987125	NA	0	45	61	44
P-0013536-T01-IM5	SOMATIC	MKRN1	BRAF	7	7	140159335	140483618	Intron of MKRN1(-): 172bp after exon 3	Intron of BRAF(-): 661bp before exon 10	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) rearrangement: c.544+172:MKRN1_c.1178-661:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (MKRN1-BRAF)	324283	NA	0	8	12	8
P-0013841-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29683577	32414384	Intron of EWSR1(+): 454bp after exon 6	Intron of WT1(-): 83bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused in-frame to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32414384::chr22:g.29683577)	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	82	0	69
P-0014341-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874401	42872363	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 4-10): c.56-2247:TMPRSS2_c.-4097:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2997962	NA	0	35	53	35
P-0017365-T02-IM6	SOMATIC	RET	CCDC6	10	10	43611464	61640379	Intron of RET(+):567bp before exon 12	Intron of CCDC6(-):26Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+25501:CCDC6_c.2137-568:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18028915	NA	0	51	10	85
P-0017365-T02-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18540068	18552482	Intron of PIK3C2G(+):4Kb before exon 14	Intron of PIK3C2G(+):110bp before exon 15	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1873-3988_c.2004-111del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	12414	NA	0	10	10	10
P-0020847-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834901	42867106	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):601bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.127-601:TMPRSS2_c.19-17357:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3032205	NA	0	26	10	27
P-0021914-T01-IM6	SOMATIC	ROS1	LARS	6	5	117646519	145500267	Intron of ROS1(-):867bp after exon 33	Intron of LARS(-):201bp before exon 31	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - LARS (NM_020117) rearrangement: t(5,6)(q32,q22.1)(chr5:g.145500267::chr6:g.117646519)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ROS1:LARS}	0	NA	0	22	10	24
P-0021916-T01-IM6	SOMATIC	NF2	CABP7	22	22	30000096	30109685	Exon 1 of NF2(+)	IGR: 7Kb before CABP7(+)	GRCh37	DELETION	NF2 (NM_000268) -  rearrangement: c.109:NF2_chr22:g.30109685del	PRECISE		MANUAL_OK	3to5	-	109589	NA	0	27	10	28
P-0024178-T01-IM6	SOMATIC	MAP2K4	PABPC1P2	17	2	12028641	147903758	Exon 8 of MAP2K4(+)	IGR: 559Kb before PABPC1P2(+)	GRCh37	TRANSLOCATION	MAP2K4 (NM_003010) Rearrangement : t(2,17)(q23.1,p12)(chr2:g.147903758::chr17:g.12028641)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	8	10
P-0024183-T01-IM6	SOMATIC	FGFR2	PLXNA2	10	1	123242818	208433127	Intron of FGFR2(-):393bp after exon 17	IGR: 238Kb before PLXNA2(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) Rearrangement : t(1;10)(q32.3;q26.11)(chr1:g.208433127::chr10:g.123242818)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	8	0	8
P-0024187-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123240573	123988973	Intron of FGFR2(-):1Kb before exon 18	Exon 12 of TACC2(+)	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) Fusion (FGFR2 exon 17 with TACC2 exon12) : c.2302-1038:FGFR2_c.8009:TACC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR2:TACC2}	748400	NA	0	7	10	7
P-0024193-T01-IM6	SOMATIC	IKZF4	ERBB3	12	12	56408400	56481371	IGR: 6Kb before IKZF4(+)	Exon 5 of ERBB3(+)	GRCh37	DUPLICATION	ERBB3 (NM_001982) rearrangement: chr12: 56408400 _c.558dup	PRECISE		MANUAL_OK	5to3	-	72971	NA	0	16	10	16
P-0024201-T01-IM6	SOMATIC	PIM1	TMEM217	6	6	37140468	37178326	Intron of PIM1(+):303bp before exon 5	Promoter of TMEM217(-):2Kb from tx start	GRCh37	DUPLICATION	PIM1 (NM_002648) rearrangement: c.608-304_chr6:g.37178326dup	PRECISE		MANUAL_OK	5to3	-	37858	NA	0	30	10	31
P-0024203-T01-IM6	SOMATIC	USP25	TERT	21	5	17011913	1279360	IGR: 90Kb before USP25(+)	Intron of TERT(-):45bp after exon 5	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;21)(p15.33;q21.1)(chr5:g.1279360::chr21:g.17011913)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	134	10	140
P-0024205-T01-IM6	SOMATIC	DDX39A	DNAJB1	19	19	14527369	14627075	3-UTR of DDX39A(-):3Kb after coding stop	Intron of DNAJB1(-):93bp before exon 3	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: chr19:g.14527369_c.793-93del	PRECISE		MANUAL_OK	3to5	-	99706	NA	0	5	10	5
P-0024206-T01-IM6	SOMATIC	RNF213	RPTOR	17	17	78359671	78866473	Intron of RNF213(+):250bp after exon 61	Intron of RPTOR(+):55bp before exon 19	GRCh37	DELETION	RNF213 (NM_001256071) - RPTOR (NM_020761) rearrangement: c.14539+250:RNF213_c.2102-56:RPTORdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RNF213:RPTOR}	506802	NA	0	47	10	48
P-0024206-T01-IM6	SOMATIC	EXOC4	BRAF	7	7	132951665	140487956	Intron of EXOC4(+):8Kb before exon 2	Intron of BRAF(-):572bp before exon 9	GRCh37	INVERSION	EXOC4 (NM_021807) - BRAF (NM_004333) rearrangement: c.87-8072:EXOC4_c.1141-572:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EXOC4:BRAF}	7536291	NA	0	9	10	9
P-0024217-T01-IM6	SOMATIC	FLT3	RMDN2	13	2	28623971	38136570	Intron of FLT3(-):60bp before exon 7	IGR: 16Kb before RMDN2(+)	GRCh37	TRANSLOCATION	FLT3 (NM_004119) rearrangement: t(2;13)(p22.2;q12.2)(chr2:g.38136570::chr13:g.28623971)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	4
P-0024217-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39928235	42874589	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-4473:TMPRSS2_c.39+19351:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2946354	NA	0	10	10	10
P-0024219-T01-IM6	SOMATIC	TTC7A	MSH6	2	2	47194380	48023056	Intron of TTC7A(+):8Kb before exon 4	Exon 3 of MSH6(+)	GRCh37	DELETION	TTC7A (NM_020458) - MSH6 (NM_000179) rearrangement: c.518-7732:TTC7A_c.481:MSH6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TTC7A:MSH6}	828676	NA	0	3	10	4
P-0024222-T01-IM6	SOMATIC	AXL	AXL	19	19	41727282	41737102	Intron of AXL(+):131bp after exon 3	Exon 6 of AXL(+)	GRCh37	INVERSION	AXL (NM_021913) rearrangement: c.409+131_c.682inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	9820	NA	0	6	10	6
P-0024296-T01-IM6	SOMATIC	ATP1A1	NOTCH2	1	1	116787704	120468046	IGR: 128Kb before ATP1A1(+)	Exon 25 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.4393:NOTCH2_chr1:g.116787704del	PRECISE		MANUAL_OK	3to5	-	3680342	NA	0	127	10	136
P-0024346-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1732758	1808859	Intron of TACC3(+):69bp after exon 5	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 6-16): c.2291:FGFR3_c.1461+69:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	76101	NA	0	49	10	49
P-0024347-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139392832	139396904	Intron of NOTCH1(-):518bp after exon 33	Exon 28 of NOTCH1(-)	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.5204_c.6180+519dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4072	NA	0	71	10	73
P-0024347-T01-IM6	SOMATIC	TMSB4X	TERT	X	5	12999962	1295115	IGR: 7Kb before TMSB4X(+)	5-UTR of TERT(-):41Kb before coding start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(X;5)(p22.2;p15.33)(chrX:g.12999962::chr5:g.1295115)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	28
P-0024349-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86560571	86564719	IGR: 3Kb before RASA1(+)	Exon 1 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.-3698_c.451del	PRECISE		MANUAL_OK	3to5	-	4148	NA	0	50	10	59
P-0023801-T02-IM6	SOMATIC	NUP93	NUP93	16	16	56828934	56832427	Intron of NUP93(+):3Kb before exon 4	Exon 4 of NUP93(+)	GRCh37	INVERSION	NUP93 (NM_014669) rearrangement: c.298-3454_c.337inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3493	NA	0	2	4	2
P-0023801-T02-IM6	SOMATIC	LOC101927640	NOTCH2	6	1	112594573	120465160	5-UTR of LOC101927640(+):33Kb before coding start	Intron of NOTCH2(-):91bp before exon 28	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q21)(chr1:g.120465160::chr6:g.112594573)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	75	10	75
P-0024099-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2B-AS1	9	9	21968229	22030267	Exon 3 of CDKN2Ap14ARF(-)	5-UTR of CDKN2B-AS1(+):91Kb before coding start	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement: c.*114_chr9:g.22030267inv	PRECISE		MANUAL_OK	3to5	-	62038	NA	NA	6	0	NA
P-0024099-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2B-AS1	9	9	21968229	22030267	Exon 3 of CDKN2Ap16INK4A(-)	5-UTR of CDKN2B-AS1(+):91Kb before coding start	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.470_chr9:g.22030267inv	PRECISE		MANUAL_OK	3to5	-	62038	NA	NA	6	0	NA
P-0024105-T01-IM6	SOMATIC	EP300	COLQ	22	3	41562715	15513123	Intron of EP300(+):45bp after exon 23	Intron of COLQ(-):1Kb before exon 10	GRCh37	TRANSLOCATION	EP300 (NM_001429) - COLQ (NM_005677) rearrangement: t(3;22)(p25.1;q13.2)(chr3:g.15513123::chr22:g.41562715)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EP300:COLQ}	0	NA	0	21	0	21
P-0024105-T01-IM6	SOMATIC	E2F3	CDKAL1	6	6	20481435	21024970	Intron of E2F3(+):1bp before exon 3	Intron of CDKAL1(+):24Kb after exon 11	GRCh37	DUPLICATION	CDKAL1 (NM_017774) - E2F3 (NM_001949) rearrangement: c.1055+24367:CDKAL1_c.506-2:E2F3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CDKAL1:E2F3}	543535	NA	0	14	0	14
P-0024108-T01-IM6	SOMATIC	YAP1	LOC101929497	11	11	101985127	127711790	Intron of YAP1(+):2bp after exon 2	IGR: 571Kb before LOC101929497(+)	GRCh37	INVERSION	YAP1 (NM_001130145) rearrangement: c.572+2:YAP1_chr11:g.127711790inv	PRECISE		MANUAL_OK	3to3	-	25726663	NA	0	36	10	35
P-0024114-T01-IM6	SOMATIC	STAT5A	VMP1	17	17	40461184	57867668	Intron of STAT5A(+):68bp after exon 18	Intron of VMP1(+):16Kb after exon 7	GRCh37	INVERSION	STAT5A (NM_003152) rearrangement: c.2114+68:STAT5A_chr17:g.57867668inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	17406484	NA	0	2	10	2
P-0024128-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1608117	1619781	Promoter of TCF3(-):1Kb from tx start	Exon 13 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1165_c.*3255del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11664	NA	0	34	10	42
P-0024129-T01-IM6	SOMATIC	KMT2D	RAB28	12	4	49443742	12861485	Exon 11 of KMT2D(-)	IGR: 508Kb before RAB28(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(4;12)(p15.33;q13.12)(chr4:g.12861485::chr12:g.49443742)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	62	10	87
P-0024136-T01-IM6	SOMATIC	ALK	EML4	2	2	29448266	42503492	Intron of ALK(-):60bp after exon 19	Intron of EML4(+):4Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons  1-6 fused to ALK exons 20 -29): c.668-4498:EML4_c.3172+61:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13055226	NA	0	61	10	61
P-0024215-T01-IM6	SOMATIC	NF1	NF1	17	17	29664517	29673874	Exon 43 of NF1(+)	Intron of NF1(+):2Kb before exon 49	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.6559_c.7190-2264dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9357	NA	0	2	10	17
P-0024308-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8115818	8118976	Exon 6 of GATA3(+)	Promoter of GATA3(+):22Kb from tx start	GRCh37	DELETION	GATA3 (NM_002051) rearrangement: c.1164_c.*2990del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3158	NA	0	51	10	54
P-0019439-T02-IM6	SOMATIC	FGFR2	L3MBTL3	10	6	123239680	130408449	Intron of FGFR2(-):145bp before exon 18	Intron of L3MBTL3(+):1Kb after exon 16	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - L3MBTL3 (NM_032438) rearrangement: t(6;10)(q23.1;q26.1)(chr6:g.130408449::chr10:g.123239680)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:L3MBTL3}	0	NA	0	29	10	36
P-0022245-T01-IM6	SOMATIC	BRCA2	CDC16	13	13	32950951	114995748	Intron of BRCA2(+):23bp after exon 21	IGR: 5Kb before CDC16(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.8754+23:BRCA2_chr13:g.114995748del	PRECISE		MANUAL_OK	3to5	-	82044797	NA	0	26	10	28
P-0024163-T01-IM6	SOMATIC	PPP2R3A	ERCC3	3	2	135820553	128029081	Intron of PPP2R3A(+):295bp before exon 10	Intron of ERCC3(-):52bp before exon 12	GRCh37	TRANSLOCATION	ERCC3 (NM_000122) Rearrangement : t(2,3)(q21.1,q22.1)(chr2:g.128029081::chr3:g.135820553)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	18
P-0021321-T01-IM6	SOMATIC	ATM	DDX10	11	11	108165708	108680217	Exon 32 of ATM(+)	Intron of DDX10(+):29Kb before exon 14	GRCh37	DUPLICATION	DDX10 (NM_004398) - ATM (NM_000051) rearrangement: c.1966-28956:DDX10_c.4831:ATMdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DDX10:ATM}	514509	NA	0	17	10	18
P-0021676-T01-IM6	SOMATIC	EZH1	EZH1	17	17	40861960	40865299	Intron of EZH1(-):5bp before exon 13	Exon 11 of EZH1(-)	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.1132_c.1402-5del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3339	NA	0	40	10	41
P-0022548-T02-IM6	SOMATIC	GNS	NUF2	12	1	65152246	163313797	Intron of GNS(-):618bp after exon 1	Intron of NUF2(+):137bp after exon 10	GRCh37	TRANSLOCATION	NUF2 (NM_031423) rearrangement: t(1;12)(q23.3;q14.2)(chr1:g.163313797::chr12:g.65152246)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	7	10	5
P-0024169-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876657	42870901	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):785bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement : c.56-785:TMPRSS2_c.40-59113:ERGinv	PRECISE		MANUAL_OK	3to3	-	2994244	NA	0	15	10	14
P-0024327-T01-IM6	SOMATIC	MRPL45P2	MET	17	7	45551635	116412599	3-UTR of MRPL45P2(-):18Kb after coding stop	Intron of MET(+):556bp after exon 14	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(7;17)(q31.2;q21.32)(chr7:g.116412599::chr17:g.45551635)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	128	10	136
P-0019967-T02-IM6	SOMATIC	TRAPPC9	AGO2	8	8	140948477	141542713	Intron of TRAPPC9(-):26Kb before exon 20	Exon 18 of AGO2(-)	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.3105-25933:TRAPPC9_c.2273:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAPPC9:AGO2}	594236	NA	0	10	10	10
P-0024168-T01-IM6	SOMATIC	POGK	IL10	1	1	166811379	206944536	Intron of POGK(+):1Kb after exon 2	Intron of IL10(-):132bp before exon 3	GRCh37	INVERSION	POGK (NM_017542) - IL10 (NM_000572) Rearrangement :  c.132+1054:POGK_c.226-132:IL10inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {POGK:IL10}	40133157	NA	0	4	8	4
P-0024329-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10244362	10305969	Exon 40 of DNMT1(-)	Promoter of DNMT1(-):62Kb from tx start	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4832_c.-394del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	61607	NA	0	39	10	39
P-0024329-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55273109	55274688	Exon 28 of EGFR(+)	3-UTR of EGFR(+):188Kb after coding stop	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3432_c.*1378del	PRECISE		MANUAL_OK	3to5	-	1579	NA	0	72	10	1110
P-0024295-T01-IM6	SOMATIC	SLC35F6	ALK	2	2	26958429	29448987	IGR: 29Kb before SLC35F6(+)	Intron of ALK(-):556bp before exon 19	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3068-556:ALK_chr2:g.26958429inv	PRECISE		MANUAL_OK	5to5	-	2490558	NA	0	8	10	16
P-0024400-T01-IM6	SOMATIC	PTPRT	ATP9A	20	20	40727033	50196752	Intron of PTPRT(-):27bp after exon 28	IGR: 17Kb before ATP9A(-)	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.3903+28_chr20:g.50196752inv	PRECISE		MANUAL_OK	5to5	-	9469719	NA	0	2	10	11
P-0024440-T01-IM6	SOMATIC	NF1	NF1	17	17	29423694	29685438	Intron of NF1(+):1Kb after exon 1	Intron of NF1(+):59bp before exon 55	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.60+1307_c.7971-60del	PRECISE		MANUAL_OK	3to5	Deletion of 53 exons : out of frame	261744	NA	0	32	10	34
P-0024446-T01-IM6	SOMATIC	PSAP	NOTCH4	10	6	73606023	32169104	Intron of PSAP(-):5Kb after exon 1	Exon 22 of NOTCH4(-)	GRCh37	TRANSLOCATION	PSAP (NM_002778) - NOTCH4 (NM_004557) rearrangement:  t(6;10)(p21.32;q22.1)(chr6:g.32169104::chr10:g.73606023)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PSAP:NOTCH4}	0	NA	0	74	10	78
P-0024446-T01-IM6	SOMATIC	LDLR	WHSC1	19	4	11233799	1918818	Intron of LDLR(+):50bp before exon 15	Intron of WHSC1(+):54bp after exon 4	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) - LDLR (NM_000527) rearrangement: t(4;19)(p16.3;p13.2)(chr4:g.1918818::chr19:g.11233799)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	15	10	11
P-0024448-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56111707	56114618	Exon 1 of MAP3K1(+)	Intron of MAP3K1(+):3Kb after exon 1	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.307_c.482+2736del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2911	NA	0	62	10	72
P-0024450-T01-IM6	SOMATIC	PPAN-P2RY11	NTHL1	19	16	10213963	2090167	Promoter of PPAN-P2RY11(+):3Kb from tx start	Exon 5 of NTHL1(-)	GRCh37	TRANSLOCATION	NTHL1 (NM_002528) rearrangement: t(16;19)(p13.3;p13.2)(chr16:g.2090167::chr19:g.10213963)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	22
P-0024450-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377385	139397969	5-UTR of SEC16A(-):41Kb before coding start	Intron of NOTCH1(-):187bp before exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) fusion (SEC16A exon 1 fused to NOTCH1 exons 27-34): c.-192+5:SEC16A_c.5019-187:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {SEC16A:NOTCH1}	20584	NA	0	20	10	19
P-0024418-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265389	41266549	5-UTR of CTNNB1(+):170bp before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement :  c.-48-123_c.346del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1160	NA	0	39	0	43
P-0006009-T02-IM6	SOMATIC	LINC00935	KMT2D	12	12	49153129	49426826	5-UTR of LINC00935(+):6Kb before coding start	Exon 39 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.11662:KMT2D_chr12:g.49153129del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	273697	NA	0	4	10	4
P-0006009-T02-IM6	SOMATIC	ASXL2	ASXL2	2	2	25927220	25991677	IGR: 35Kb before ASXL2(-)	Exon 6 of ASXL2(-)	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.565:ASXL2_chr2:g.25927220del	PRECISE		MANUAL_OK	3to5	-	64457	NA	0	10	10	13
P-0023839-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39826084	42873109	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 fused with ERG exons 2-10): c.56-2993:TMPRSS2_c.19-8540:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3047025	NA	0	16	10	16
P-0024461-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877494	42872210	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449): c.56-2094:TMPRSS2_:c.40-59950:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994716	NA	0	63	10	69
P-0024543-T01-IM6	SOMATIC	CASP10	CASP8	2	2	202046246	202123122	Promoter of CASP10(+):1Kb from tx start	Intron of CASP8(+):17bp after exon 1	GRCh37	DUPLICATION	CASP8 (NM_001080125) - CASP10 (NM_032977) rearrangement: c.151+17:CASP8_c.-1793dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CASP8:CASP10}	76876	NA	0	40	10	46
P-0024553-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11144108	11145743	Exon 26 of SMARCA4(+)	Exon 29 of SMARCA4(+)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.3689_c.4105inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1635	NA	0	2	5	2
P-0024554-T01-IM6	SOMATIC	SOCS1	SOCS1	16	16	11349288	11350457	Exon 2 of SOCS1(-)	Promoter of SOCS1(-):2Kb from tx start	GRCh37	INVERSION	SOCS1 (NM_003745) rearrangement: c.-572_c.48inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1169	NA	0	3	7	3
P-0024518-T01-IM6	SOMATIC	NF1	HCN1	17	5	29665106	46356017	Exon 45 of NF1(+)	IGR: 1Mb before HCN1(-)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(5;17)(p11;q11.2)(chr5:g.46356017::chr17:g.29665106)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	6
P-0024524-T01-IM6	SOMATIC	RAD54L	AGBL4	1	1	46738343	49003235	Exon 13 of RAD54L(+)	Intron of AGBL4(-):2Kb after exon 12	GRCh37	INVERSION	AGBL4 (NM_032785) - RAD54L (NM_001142548) rearrangement: c.1364+2079:AGBL4_c.1245-1:RAD54Linv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {AGBL4:RAD54L}	2264892	NA	0	83	10	94
P-0024530-T01-IM6	SOMATIC	NOL4L	DNMT3B	20	20	31140058	31388508	Intron of NOL4L(-):24Kb before exon 2	Intron of DNMT3B(+):132bp before exon 18	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.1906-133:DNMT3B_chr20:g.31140058del	PRECISE		MANUAL_OK	3to5	-	248450	NA	0	7	6	7
P-0024530-T01-IM6	SOMATIC	LOC440982	MAP3K13	3	3	147659711	185155328	IGR: 521Kb before LOC440982(+)	Exon 3 of MAP3K13(+)	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.569:MAP3K13_chr3:g.147659711del	PRECISE		MANUAL_OK	3to5	-	37495617	NA	0	18	10	22
P-0024531-T01-IM6	SOMATIC	CNTN1	ARID2	12	12	41070584	46244967	IGR: 16Kb before CNTN1(+)	Exon 15 of ARID2(+)	GRCh37	INVERSION	ARID2 (NM_152641): c.3061:ARID2_chr12:g.41070584inv	PRECISE		MANUAL_OK	3to3	-	5174383	NA	0	13	10	13
P-0024532-T01-IM6	SOMATIC	EWSR1	CHAT	22	10	29683485	50812403	Intron of EWSR1(+):362bp after exon 8	IGR: 5Kb before CHAT(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(10;22)(q11.23;q12.2)(chr10:g.50812403::chr22:g.29683485)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	49	10	61
P-0024511-T01-IM6	SOMATIC	RAD51D	TNFSF15	17	9	33446707	117500259	5-UTR of RAD51D(-):19Kb before coding start	IGR: 47Kb before TNFSF15(-)	GRCh37	TRANSLOCATION	RAD51D (NM_133629) rearrangement: t(9;17)(q32;q12)(chr9:g.117500259::chr17:g.33446707)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0024534-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40083159	42870678	IGR: 28Kb before LINC00114(-)	Intron of TMPRSS2(-):562bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-562:TMPRSS2_chr21:g.40083159del	PRECISE		MANUAL_OK	3to5	-	2787519	NA	0	155	10	170
P-0024537-T01-IM6	SOMATIC	ATR	AGTR1	3	3	142275498	147951936	Intron of ATR(-):81bp before exon 9	IGR: 464Kb before AGTR1(+)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.1886-81:ATR_chr3:g.147951936inv	PRECISE		MANUAL_OK	3to3	-	5676438	NA	0	3	7	3
P-0024538-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44922103	44929387	Intron of KDM6A(+):110bp after exon 15	Exon 17 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.1527+110_c.2487del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7284	NA	0	70	10	77
P-0004787-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72827544	72828107	Exon 9 of ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8474_c.9037del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	563	NA	2	100	125	348
P-0024586-T01-IM6	SOMATIC	FLT1	UBL3	13	13	29004121	30250041	Intron of FLT1(-):65bp after exon 8	IGR: 89Kb before UBL3(-)	GRCh37	INVERSION	FLT1 (NM_002019) rearrangement: c.1106+66_chr13:g.30250041inv	PRECISE		MANUAL_OK	5to5	-	1245920	NA	0	15	10	15
P-0024608-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683527	32417807	Intron of EWSR1(+):404bp after exon 8	Exon 7 of WT1(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion ( EWSR1 exons 1-8 fused with WT1 exons 7-10. One of the breakpoints is within WT1 exon 7): t(11;22)(p13;q12.2)(chr11:g.32417807::chr22:g.29683527)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:WT1}	0	NA	0	28	10	27
P-0024752-T01-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48893132	79959188	Intron of TFE3(-):1Kb before exon 6	Intron of ASPSCR1(+):4Kb after exon 7	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - ASPSCR1 (NM_001251888) fusion (TFE3 exons 1-5 with ASPSCR1 exons 8-17) : t(X;17)(p11.23;q25.3)(chrX:g.48893132::chr17:g.79959188)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TFE3:ASPSCR1}	0	NA	0	7	10	7
P-0024760-T01-IM6	SOMATIC	TRPC6	ATM	11	11	101356283	108150225	Intron of TRPC6(-):2Kb before exon 5	Exon 23 of ATM(+)	GRCh37	INVERSION	ATM (NM_000051) -TRPC6 (NM_004621) Rearrangement : c.3292:ATM_c.1294-2387:TRPC6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATM:TRPC6}	6793942	NA	0	6	10	6
P-0000509-T03-IM6	SOMATIC	MAP2K1	MAP2K1	15	15	66774216	66777327	Exon 6 of MAP2K1(+)	Exon 7 of MAP2K1(+)	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement: c.692_c.694-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3111	NA	0	3	10	4
P-0024593-T01-IM6	SOMATIC	AK8	TSC1	9	9	135678073	135798803	Intron of AK8(-):10Kb before exon 11	Exon 6 of TSC1(-)	GRCh37	DELETION	TSC1 (NM_000368) - AK8 (NM_152572) rearrangement: c.440:TSC1_c.980-9911:AK8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TSC1:AK8}	120730	NA	0	17	10	17
P-0024598-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46215308	46241613	Intron of ARID2(+):38bp after exon 6	Intron of ARID2(+):893bp after exon 12	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.705+38_c.1580+893del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	26305	NA	0	5	10	6
P-0024598-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821951	42870153	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):37bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-37:TMPRSS2_c.19-4407:ERGinv	PRECISE		MANUAL_OK	3to3	-	3048202	NA	0	37	10	37
P-0024600-T01-IM6	SOMATIC	NTRK1	COPA	1	1	156836316	160259587	Intron of NTRK1(+):385bp before exon 4	3-UTR of COPA(-):359bp after coding stop	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.360-386:NTRK1_chr1:g.160259587del	PRECISE		MANUAL_OK	3to5	-	3423271	NA	0	18	10	19
P-0024602-T01-IM6	SOMATIC	SMARCD1	CTDSP2	12	12	50488542	58222720	Intron of SMARCD1(+):187bp after exon 10	Intron of CTDSP2(-):510bp after exon 2	GRCh37	INVERSION	SMARCD1 (NM_003076) - CTDSP2 (NM_005730) rearrangement: c.1269+187:SMARCD1_c.213+511:CTDSP2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SMARCD1:CTDSP2}	7734178	NA	0	19	10	19
P-0024635-T01-IM6	SOMATIC	SH2D1A	LINGO2	X	9	123505266	29112796	3-UTR of SH2D1A(+):25Kb after coding stop	5-UTR of LINGO2(-):1Mb before coding start	GRCh37	TRANSLOCATION	SH2D1A (NM_002351) rearrangement: t(X;9)(q25;p21.2)(chrX:g.123505266::chr9:g.29112796)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	35	10	34
P-0024672-T01-IM6	SOMATIC	ANKRD12	TP53	18	17	9253524	7580666	Intron of ANKRD12(+):684bp before exon 8	5-UTR of TP53(-):8Kb before coding start	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement : t(17;18)(p13.1;p11.22)(chr17:g.7580666;18:9253524)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	41	10	40
P-0024672-T01-IM6	SOMATIC	KCNV2	JAK2	9	9	2692334	5069877	IGR: 25Kb before KCNV2(+)	Intron of JAK2(+):47bp before exon 12	GRCh37	DELETION	JAK2 (NM_004972) Rearrangement : c.1514-48:JAK2_chr9:g.2692334del	PRECISE		MANUAL_OK	3to5	-	2377543	NA	0	6	10	6
P-0024679-T01-IM6	SOMATIC	ALK	CTSE	2	1	29543594	206318648	Intron of ALK(-):22bp after exon 7	Intron of CTSE(+):181bp after exon 2	GRCh37	TRANSLOCATION	ALK (NM_004304) - CTSE(NM_001910) Rearrangement: t(1;2)(q32.1;p23.3)(chr1:g.206318648; chr2:g.29543594)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	44	10	45
P-0024679-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872360	42874863	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -  ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exon 4-11 ) : c.56-4747:TMPRSS2_c.40-54816:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3002503	NA	0	34	10	35
P-0024680-T01-IM6	SOMATIC	DNAJB1	VSTM1	19	19	14628395	54554585	Intron of DNAJB1(-):537bp before exon 2	Intron of VSTM1(-):9Kb before exon 2	GRCh37	INVERSION	DNAJB1 (NM_006145) Rearrangement: c.212-537:DNAJB1_c.394+79:VSTM1inv	PRECISE		MANUAL_OK	3to3	-	39926190	NA	0	2	9	3
P-0024681-T01-IM6	SOMATIC	MIR4280	RASA1	5	5	86350135	86645035	IGR: 61Kb before MIR4280(-)	Exon 8 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) Rearrangement : chr5:g.86350135_c.1107:RASA1del	PRECISE		MANUAL_OK	3to5	-	294900	NA	0	7	10	7
P-0024687-T01-IM6	SOMATIC	CCNE1	URI1	19	19	30313488	30433580	Exon 11 of CCNE1(+)	Intron of URI1(+):9bp after exon 1	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.1088:CCNE1_chr19:g.30433580inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	120092	NA	0	11	10	10
P-0024689-T01-IM6	SOMATIC	LOC102467213	NSD1	5	5	106346069	176719124	3-UTR of LOC102467213(-):646bp after coding stop	Exon 22 of NSD1(+)	GRCh37	INVERSION	NSD1 (NM_022455) rearrangement: c.6428:NSD1_chr5:g.106346069inv	PRECISE		MANUAL_OK	3to3	-	70373055	NA	0	90	10	90
P-0024691-T01-IM6	SOMATIC	MAP2K1	MAP2K1	15	15	66777665	66782342	Intron of MAP2K1(+):136bp after exon 7	Intron of MAP2K1(+):241bp after exon 10	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement: c.895+136_c.1068+241del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4677	NA	0	15	10	21
P-0024691-T01-IM6	SOMATIC	POU2F2	ERF	19	19	42624974	42759116	Intron of POU2F2(-):1Kb after exon 4	Intron of ERF(-):13bp after exon 1	GRCh37	DUPLICATION	POU2F2 (NM_001207025) - ERF (NM_006494) rearrangement: c.186+1304:POU2F2_c.22+14:ERFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {POU2F2:ERF}	134142	NA	0	90	10	104
P-0024695-T01-IM6	SOMATIC	CWH43	HIST3H3	4	1	49583945	228612839	IGR: 595Kb before CWH43(+)	Exon 1 of HIST3H3(-)	GRCh37	TRANSLOCATION	HIST3H3 (NM_003493) rearrangement: t(1;4)(q42.13;p11)(chr1:g.228612839::chr4:g.49583945)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	10	0	18
P-0022642-T02-IM6	SOMATIC	RET	CCDC6	10	10	43611768	61626673	Intron of RET(+):263bp before exon 12	Intron of CCDC6(-):14Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) Fusion (CCDC6 exon1 fused to RET exons 12-20) : c.304-14214:CCDC6_c.2137-273:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18014905	NA	0	10	10	19
P-0024722-T01-IM6	SOMATIC	BRCA1	NGFR	17	17	41228583	47572328	Exon 13 of BRCA1(-)	Promoter of NGFR(+):326bp from tx start	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.4406:BRCA1_chr17:g.47572328inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRCA1:NGFR}	6343745	NA	0	2	6	2
P-0024741-T01-IM6	SOMATIC	CDK12	LOC102724874	17	8	37627932	78247787	Exon 2 of CDK12(+)	IGR: 115Kb before LOC102724874(+)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(8;17)(q21.11;q12)(chr8:g.78247787::chr17:g.37627932)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	79	10	84
P-0024784-T01-IM6	SOMATIC	NF1	NAALADL2	17	3	29586388	174719048	Intron of NF1(+):241bp after exon 33	Intron of NAALADL2(+):96Kb before exon 2	GRCh37	TRANSLOCATION	NF1 (NM_001042492) Rearrangement : t(3;17)(q26.31;q11.2)(chr3:g.174719048;chr17:g.29586388)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	22	10	22
P-0024800-T01-IM6	SOMATIC	SESN1	PPIL6	6	6	109319641	109742685	Intron of SESN1(-):74bp after exon 5	Intron of PPIL6(-):2Kb before exon 6	GRCh37	DUPLICATION	SESN1 (NM_014454) - PPIL6 (NM_001111298) rearrangement: c.972+75:SESN1_c.632-2239:PPIL6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SESN1:PPIL6}	423044	NA	0	5	6	6
P-0024804-T01-IM6	SOMATIC	LMBRD1	PPP4R2	6	3	70482937	73114591	Intron of LMBRD1(-):7Kb after exon 3	Exon 9 of PPP4R2(+)	GRCh37	TRANSLOCATION	PPP4R2 (NM_174907) rearrangement: t(3;6)(p13;q13)(chr3:g.73114591::chr6:g.70482937)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	10
P-0024805-T01-IM6	SOMATIC	CACNA1A	BRD4	19	19	13410331	15349543	Intron of CACNA1A(-):164bp before exon 19	Intron of BRD4(-):10bp after exon 19	GRCh37	DUPLICATION	CACNA1A (NM_001127222) - BRD4 (NM_058243) rearrangement: c.2280-164:CACNA1A_c.4020+11:BRD4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CACNA1A:BRD4}	1939212	NA	0	3	5	3
P-0024805-T01-IM6	SOMATIC	CEBPA	CEACAM1	19	19	33792502	43013024	Exon 1 of CEBPA(-)	3-UTR of CEACAM1(-):236bp after coding stop	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.819_chr19:g.43013024inv	PRECISE		MANUAL_OK	5to5	-	9220522	NA	0	7	10	8
P-0024805-T01-IM6	SOMATIC	KANTR	KDM5C	X	X	53126585	53225968	5-UTR of KANTR(+):47Kb before coding start	Exon 19 of KDM5C(-)	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: chrX:g.53126585_c.2881inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KDM5C:KANTR}	99383	NA	0	2	10	4
P-0024807-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684194	128656386	Intron of EWSR1(+):400bp before exon 9	Intron of FLI1(+):4Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128656386::chr22:g.29684194)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	89	10	94
P-0024844-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212285344	212645424	Intron of ERBB4(-):8bp before exon 25	Intron of ERBB4(-):7Kb after exon 4	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.556+7326_c.2965-8del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 20 exons : out of frame	360080	NA	0	59	0	62
P-0024865-T01-IM6	SOMATIC	BCL2L1	FSIP1	20	15	30263448	40027488	Intron of BCL2L1(-):10Kb before exon 3	Intron of FSIP1(-):3Kb after exon 8	GRCh37	TRANSLOCATION	BCL2L1 (NM_138578) - FSIP1 (NM_152597) rearrangement: t(15;20)(q14;q11.21)(chr15:g.40027488::chr20:g.30263448)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BCL2L1:FSIP1}	0	NA	0	8	10	8
P-0024871-T01-IM6	SOMATIC	CDK12	CACNA1G	17	17	37667806	48702116	Exon 8 of CDK12(+)	Intron of CACNA1G(+):226bp after exon 35	GRCh37	DELETION	CDK12 (NM_016507) - CACNA1G (NM_018896) rearrangement: c.2691:CDK12_c.6399+226:CACNA1Gdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDK12:CACNA1G}	11034310	NA	0	51	10	52
P-0024873-T01-IM6	SOMATIC	KDM6A	CXorf36	X	X	44938446	45005757	Exon 20 of KDM6A(+)	Promoter of CXorf36(-):2Kb from tx start	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.2994_chrX:g.45005757del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	67311	NA	0	36	10	40
P-0024874-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397768	139433581	Exon 27 of NOTCH1(-)	Intron of NOTCH1(-):5Kb after exon 2	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.5033_c.140+4895del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	35813	NA	0	50	10	56
P-0024920-T01-IM6	SOMATIC	INHBC	GLI1	12	12	57818571	57864525	IGR: 10Kb before INHBC(+)	Exon 12 of GLI1(+)	GRCh37	DUPLICATION	GLI1 (NM_005269) rearrangement: chr12:g.57818571_c.2002dup	PRECISE		MANUAL_OK	5to3	-	45954	NA	0	28	10	29
P-0024166-T02-IM6	SOMATIC	SPEN	WNT4	1	1	16265386	22588125	Intron of SPEN(+):15bp after exon 14	IGR: 144Kb before WNT4(-)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.10863+15:SPEN_chr1:g.22588125del	PRECISE		MANUAL_OK	3to5	-	6322739	NA	0	4	8	4
P-0024838-T01-IM6	SOMATIC	OS9	CDK4	12	12	58082608	58142932	IGR: 5Kb before OS9(+)	Intron of CDK4(-):32bp after exon 7	GRCh37	DELETION	CDK4 (NM_000075) rearrangement: c.819+33:CDK4_chr12:g.58082608del	PRECISE		MANUAL_OK	3to5	-	60324	NA	0	26	10	29
P-0024843-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313303	43611733	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):298bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 with RET exons 12-20): c.1726-1339:KIF5B_c.2137-299:RETinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298430	NA	0	5	0	6
P-0024858-T01-IM6	SOMATIC	NLRP6	INPPL1	11	11	282734	71940232	Exon 5 of NLRP6(+)	Exon 5 of INPPL1(+)	GRCh37	DUPLICATION	INPPL1 (NM_001567) - NLRP6 (NM_138329) rearrangement: c.617:INPPL1_c.2138:NLRP6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {INPPL1:NLRP6}	71657498	NA	0	20	10	20
P-0024858-T01-IM6	SOMATIC	TTTY3B	ARID2	Y	12	28562161	46297969	IGR: 688Kb before TTTY3B(+)	Intron of ARID2(+):747bp before exon 21	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(12;23)(q13.11;q11.23)(chr12:g.46297969::chrY:g.28562161)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	10	11
P-0024080-T02-IM6	SOMATIC	ATM	FLI1	11	11	108213821	128677281	Intron of ATM(+):127bp before exon 57	Intron of FLI1(+):147bp after exon 7	GRCh37	DUPLICATION	FLI1 (NM_002017) - ATM (NM_000051) rearrangement: c.781+147:FLI1_c.8269-128:ATMdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FLI1:ATM}	20463460	NA	0	16	9	17
P-0024660-T01-IM6	SOMATIC	VEGFA	TXNDC12	6	1	43748572	52516077	Exon 6 of VEGFA(+)	Intron of TXNDC12(-):5Kb after exon 1	GRCh37	TRANSLOCATION	VEGFA (NM_001171623) rearrangement: t(1;6)(p32.3;p21.1)(chr1:g.52516077::chr6:g.43748572)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	55	10	59
P-0024666-T01-IM6	SOMATIC	CDH1	TESK2	16	1	68846063	45867214	Exon 8 of CDH1(+)	Intron of TESK2(-):16Kb before exon 4	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(1;16)(p34.1;q22.1)(chr1:g.45867214::chr16:g.68846063)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	38	10	41
P-0024669-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28885572	28888834	Intron of FLT1(-):154bp after exon 27	Intron of FLT1(-):3Kb before exon 26	GRCh37	DUPLICATION	FLT1 (NM_002019) rearrangement: c.3635+155_c.3387-2599dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	3262	NA	0	7	10	7
P-0024669-T01-IM6	SOMATIC	DNMT3A	EHBP1	2	2	25459818	63009339	Exon 21 of DNMT3A(-)	Intron of EHBP1(+):11Kb after exon 5	GRCh37	DUPLICATION	DNMT3A (NM_022552) rearrangement: c.2465_chr2:g.63009339dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	37549521	NA	0	13	10	13
P-0024782-T01-IM6	SOMATIC	ARID1B	TAGAP	6	6	157519886	159459431	Intron of ARID1B(+):58bp before exon 17	Intron of TAGAP(-):171bp before exon 8	GRCh37	DUPLICATION	ARID1B (NM_020732) Rearrangement : c.4014-59:ARID1B_c.784-171:TAGAPdup	PRECISE		MANUAL_OK	5to3	-	1939545	NA	0	3	10	3
P-0024786-T01-IM6	SOMATIC	JAK1	JAK1	1	1	65302432	65316643	Intron of JAK1(-):534bp before exon 23	Intron of JAK1(-):50bp before exon 12	GRCh37	DUPLICATION	JAK1 (NM_002227) Rearrangement : c.1649-50_c.3141-534dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	14211	NA	0	25	10	25
P-0024788-T01-IM6	SOMATIC	SLC16A7	CDKN2Ap16INK4A	12	9	59921801	21970920	IGR: 68Kb before SLC16A7(+)	Exon 2 of CDKN2A(-)	GRCh37	TRANSLOCATION	CDKN2Ap16INK4A (NM_000077) Rearrangement : t(9;12)(p21.3;q14.1)(chr9:g.21970920;chr12:g.59921801)	PRECISE		MANUAL_OK	3to3	-	0	NA	NA	35	10	NA
P-0024788-T01-IM6	SOMATIC	SLC16A7	CDKN2Ap14ARF	12	9	59921801	21970920	IGR: 68Kb before SLC16A7(+)	Exon 2 of CDKN2A(-)	GRCh37	TRANSLOCATION	CDKN2Ap14ARF (NM_058195) Rearrangement :  t(9;12)(p21.3;q14.1)(chr9:g.21970920;chr12:g.59921801)	PRECISE		MANUAL_OK	3to3	-	0	NA	NA	35	10	NA
P-0024859-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56178171	56180597	Exon 14 of MAP3K1(+)	Exon 16 of MAP3K1(+)	GRCh37	DUPLICATION	MAP3K1 (NM_005921) rearrangement: c.3144_c.3926dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2426	NA	0	3	10	3
P-0024859-T01-IM6	SOMATIC	KMT2C	TMPRSS11E	7	4	152009024	69356592	Exon 5 of KMT2C(-)	Intron of TMPRSS11E(+):6Kb before exon 10	GRCh37	TRANSLOCATION	KMT2C (NM_170606) - TMPRSS11E (NM_014058) rearrangement: t(4;7)(q13.2;q36.1)(chr4:g.69356592::chr7:g.152009024)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	8
P-0024886-T01-IM6	SOMATIC	PPAP2C	DOT1L	19	19	261784	2213527	IGR: 19Kb before PPAP2C(-)	Intron of DOT1L(+):10bp before exon 17	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: chr19:g.261784_c.1558-11inv	PRECISE		MANUAL_OK	5to5	-	1951743	NA	0	11	10	13
P-0024889-T01-IM6	SOMATIC	TMTC2	TEK	12	9	83239788	27168693	Intron of TMTC2(+):11Kb before exon 2	Intron of TEK(+):90bp after exon 3	GRCh37	TRANSLOCATION	TEK (NM_000459) - TMTC2 (NM_152588) rearrangement: t(9;12)(p21.2;q21.31)(chr9:g.27168693::chr12:g.83239788)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TEK:TMTC2}	0	NA	0	6	10	7
P-0024919-T01-IM6	SOMATIC	FXYD6-FXYD2	KMT2A	11	11	117727677	118373970	5-UTR of FXYD6-FXYD2(-):36Kb before coding start	Exon 27 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104)  - FXYD6-FXYD2 (NM_001204268) rearrangement: c.7363:KMT2A_c.-5-14181:FXYD6-FXYD2del	PRECISE		MANUAL_OK	3to5	-	646293	NA	0	55	10	56
P-0024919-T01-IM6	SOMATIC	CREBBP	RAB30	16	11	3900638	82712245	Exon 2 of CREBBP(-)	5-UTR of RAB30(-):19Kb before coding start	GRCh37	TRANSLOCATION	RAB30 (NM_014488) - CREBBP (NM_004380) rearrangement: t(11;16)(q14.1;p13.3)(chr11:g.:82712245::chr16:g.3900638)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RAB30:CREBBP}	0	NA	0	62	10	65
P-0025005-T01-IM6	SOMATIC	ARID1B	ZDHHC14	6	6	157528927	157824902	Exon 20 of ARID1B(+)	Intron of ZDHHC14(+):22Kb after exon 1	GRCh37	DUPLICATION	ZDHHC14 (NM_024630) - ARID1B (NM_020732) rearrangement: c.245+21604:ZDHHC14_c.6652:ARID1Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZDHHC14:ARID1B}	295975	NA	0	5	10	5
P-0025010-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60455077	123239602	Intron of BICC1(+):7Kb before exon 3	Intron of FGFR2(-):67bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused with BICC1 exons 3-21) : c.2302-67:FGFR2_c.238-6757:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62784525	NA	0	3	8	4
P-0025012-T01-IM6	SOMATIC	PRKD1	SLC38A6	14	14	30103388	61503072	Intron of PRKD1(-):235bp after exon 8	Intron of SLC38A6(+):704bp before exon 7	GRCh37	INVERSION	PRKD1 (NM_002742) - SLC38A6(NM_153811) Rearrangement: c.1314+236:PRKD1_c.483-705:SLC38A6inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PRKD1:SLC38A6}	31399684	NA	0	6	7	6
P-0025044-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39853034	42872368	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918)  Fusion (TMPRSS2 exon1 fused with ERG exon 2) :  c.56-2252:TMPRSS2_c.18+17253:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019334	NA	0	119	10	133
P-0025047-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47678373	47703530	Intron of MSH2(+):6Kb after exon 8	Exon 13 of MSH2(+)	GRCh37	DELETION	MSH2 (NM_000251) Rearrangement : c.1386+5577_c.2030del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25157	NA	0	71	10	77
P-0025049-T01-IM6	SOMATIC	NF1	SUZ12	17	17	29585485	30324537	Exon 32 of NF1(+)	Intron of SUZ12(+):641bp after exon 15	GRCh37	DELETION	NF1 (NM_001042492) - SUZ12 (NM_015355) Rearrangement :  c.4297:NF1_c.1874+641:SUZ12del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:SUZ12}	739052	NA	0	29	10	31
P-0007043-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866972	42869029	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused to ERG exons  2-10  ): c.126+1017:TMPRSS2_c.18+3315:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3002057	NA	0	50	10	50
P-0024947-T01-IM6	SOMATIC	TMPRSS2	PRC1	21	15	42870521	91513764	Intron of TMPRSS2(-):405bp before exon 2	Intron of PRC1(-):20bp before exon 12	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q26.1;q22.3)(chr15:g.91513764::chr21:g.42870521)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	20	10	18
P-0024954-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1741353	1808755	Intron of TACC3(+):75bp before exon 11	Intron of FGFR3(+):87bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 11-16): c.2275-88:FGFR3_c.1942-76:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67402	NA	0	72	10	77
P-0024983-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191188	55223017	Intron of EGFR(+):19Kb before exon 2	Intron of EGFR(+):505bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.89-18791_c.890-506del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31829	NA	0	4	0	6
P-0024987-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263644	41266519	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-1868_c.316del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2875	NA	0	30	10	30
P-0025024-T01-IM6	SOMATIC	TP53BP1	SPG11	15	15	43701119	44950938	Exon 26 of TP53BP1(-)	Intron of SPG11(-):338bp after exon 3	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: c.5576:TP53BP1_chr15:g.44950938inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1249819	NA	0	13	10	16
P-0025024-T01-IM6	SOMATIC	C15orf41	CARD11	15	7	36753672	2972275	IGR: 118Kb before C15orf41(+)	Intron of CARD11(-):55bp before exon 11	GRCh37	TRANSLOCATION	CARD11 (NM_032415) rearrangemnt: t(7;15)(p22.2;q14)(chr7:g.2972275::chr15:g.36753672)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	28	0	29
P-0025024-T01-IM6	SOMATIC	NF1	NF1	17	17	29523609	29527520	Intron of NF1(+):4Kb before exon 9	Exon 9 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.889-3831_c.969inv	PRECISE		MANUAL_OK	5to5	-	3911	NA	0	9	10	13
P-0025030-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819988	42877633	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 with ERG exons 2-10): c.55+2244:TMPRSS2_c.19-2444:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3057645	NA	0	5	0	5
P-0010785-T02-IM6	SOMATIC	ERCC2	GIPR	19	19	45856223	46176098	Intron of ERCC2(-):117bp after exon 19	Intron of GIPR(+):10bp before exon 5	GRCh37	INVERSION	ERCC2 (NM_000400) - GIPR (NM_000164) rearrangement: c.1831+118:ERCC2_c.281-11:GIPRinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ERCC2:GIPR}	319875	NA	0	143	0	163
P-0024598-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46215308	46241613	Intron of ARID2(+):38bp after exon 6	Intron of ARID2(+):893bp after exon 12	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.705+38_c.1580+893del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	26305	NA	0	44	10	46
P-0024598-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821951	42870153	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):37bp before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-4407:ERG_c.56-37:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3048202	NA	0	78	10	78
P-0024598-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42865992	42870133	Intron of TMPRSS2(-):290bp after exon 3	Intron of TMPRSS2(-):17bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.349+291_c.56-17inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4141	NA	0	71	10	93
P-0024659-T01-IM6	SOMATIC	CASC8	RHOA	8	3	128391849	49406064	3-UTR of CASC8(-):103Kb after coding stop	Intron of RHOA(-):83bp before exon 3	GRCh37	TRANSLOCATION	RHOA (NM_001664) rearrangement: t(3;8)(p21.33;q24.21)(chr3:g.49406064::chr8:g.128391849)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	13	10	13
P-0024661-T01-IM6	SOMATIC	CDK2	ERBB3	12	12	56364721	56477644	Intron of CDK2(+):106bp before exon 5	Exon 2 of ERBB3(+)	GRCh37	DUPLICATION	ERBB3 (NM_001982) - CDK2 (NM_001798) rearrangement: c.192:ERBB3_c.589-107:CDK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB3:CDK2}	112923	NA	0	9	9	9
P-0024900-T01-IM6	SOMATIC	DOT1L	CELF5	19	19	2213887	3269794	Exon 18 of DOT1L(+)	Intron of CELF5(+):4Kb before exon 3	GRCh37	DELETION	DOT1L (NM_032482) - CELF5 (NM_021938) Rearrangement : c.1699:DOT1L_c.343-4076:CELF5del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DOT1L:CELF5}	1055907	NA	0	69	10	71
P-0024903-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858334	42873958	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -  ERG (NM_004449) Fusion : c.56-3842:TMPRSS2_c.40-40790:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015624	NA	0	26	10	28
P-0024907-T01-IM6	SOMATIC	ALK	EML4	2	2	29446877	42482651	Intron of ALK(-):483bp before exon 20	Intron of EML4(+):989bp before exon 3	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons  1-2 fused to ALK exons 20 -29): c.209-990:EML4_c.3173-483:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13035774	NA	0	109	10	106
P-0024908-T01-IM6	SOMATIC	ERBB3	E2F7	12	12	56478819	77423972	Exon 3 of ERBB3(+)	Exon 10 of E2F7(-)	GRCh37	INVERSION	E2F7 (NM_203394) - ERBB3 (NM_001982) Rearrangement : c.1523:E2F7_c.275:ERBB3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {E2F7:ERBB3}	20945153	NA	0	22	10	29
P-0024945-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683825	128663120	Intron of EWSR1(+):702bp after exon 8	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128663120::chr22:g.29683825)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	126	10	130
P-0024995-T01-IM6	SOMATIC	CMAS	BRAF	12	7	22218755	140488046	Promoter of CMAS(+):20Kb from tx start	Intron of BRAF(-):662bp before exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;12)(q34;p12.1)(chr7:g.140488046::chr12:g.22218755)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {CMAS:BRAF}	0	NA	0	27	10	24
P-0025000-T01-IM6	SOMATIC	FURIN	IL10	15	1	91379749	206942213	IGR: 32Kb before FURIN(+)	Intron of IL10(-):140bp before exon 5	GRCh37	TRANSLOCATION	IL10 (NM_000572) rearrangement: t(1;15)(q32.1;q26.1)(chr1:g.206942213::chr15:g.91379749)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	20	10	19
P-0025000-T01-IM6	SOMATIC	LOC101928135	MITF	3	3	34891227	69988440	IGR: 26Kb before LOC101928135(-)	Intron of MITF(+):108bp after exon 4	GRCh37	INVERSION	MITF (NM_198159) rearrangement: chr3:g.34891227_c.666+108inv	IMPPRECISE		MANUAL_OK	3to3	-	35097213	NA	0	27	0	26
P-0025000-T01-IM6	SOMATIC	MYRIP	ATR	3	3	39857396	142281218	5-UTR of MYRIP(+):85Kb before coding start	Exon 4 of ATR(-)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: chr3:g.39857396_c.1026inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MYRIP:ATR}	102423822	NA	0	223	0	221
P-0025000-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187442256	187449798	Intron of BCL6(-):472bp after exon 9	Intron of BCL6(-):80bp before exon 4	GRCh37	DUPLICATION	BCL6 (NM_001706) rearrangement: c.1977+473_c.162-80dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	7542	NA	0	39	10	39
P-0025001-T01-IM6	SOMATIC	GSX2	PDGFRA	4	4	55026895	55146647	IGR: 61Kb before GSX2(+)	Exon 16 of PDGFRA(+)	GRCh37	INVERSION	PDGFRA (NM_006206) rearrangement: chr4:g.55026895_c.2321inv	PRECISE		MANUAL_OK	5to5	-	119752	NA	0	38	10	47
P-0025002-T01-IM6	SOMATIC	ATM	TLE1	11	9	108190712	83867679	Exon 44 of ATM(+)	IGR: 331Kb before TLE1(-)	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(9;11)(q21.31;q22.3)(chr9:g.83867679::chr11:g.108190712)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	17	10	20
P-0025004-T01-IM6	SOMATIC	NF1	FMN1	17	15	29664399	33183939	Exon 43 of NF1(+)	Intron of FMN1(-):3Kb before exon 12	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(15;17)(q13.3;q11.2)(chr15:g.33183939::chr17:g.29664399)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	14
P-0025004-T01-IM6	SOMATIC	CCNE1	CCNE1	19	19	30299929	30314747	Promoter of CCNE1(+):3Kb from tx start	3-UTR of CCNE1(+):11Kb after coding stop	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement : c.-3155_c.*63inv	PRECISE		MANUAL_OK	3to3	-	14818	NA	0	21	10	24
P-0025004-T01-IM6	SOMATIC	SMO	NRN1	7	6	128845465	5881123	Exon 4 of SMO(+)	IGR: 117Kb before NRN1(-)	GRCh37	TRANSLOCATION	SMO (NM_005631) rearrangement: t(6;7)(p25.1;q32.1)(chr6:g.5881123::chr7:g.128845465)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	13
P-0025092-T01-IM6	SOMATIC	MS4A15	EGFL7	11	9	60541820	139563132	Intron of MS4A15(+):397bp after exon 6	Intron of EGFL7(+):7bp after exon 3	GRCh37	TRANSLOCATION	EGFL7 (NM_201446) rearrangement: t(9;11)(q34.3;q12.2)(chr9:g.139563132::chr11:g.60541820)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EGFL7:MS4A15}	0	NA	0	6	0	6
P-0025097-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874654	42875596	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+4281:TMPRSS2_c.40-57110:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000942	NA	0	110	10	116
P-0025103-T01-IM6	SOMATIC	ROS1	DCBLD1	6	6	117645439	117884687	Intron of ROS1(-):55bp after exon 34	Intron of DCBLD1(+):6Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5641+56:ROS1_chr6:g.117884687del	PRECISE		MANUAL_OK	3to5	-	239248	NA	0	7	10	8
P-0025107-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647170	149782204	Intron of ROS1(-):216bp after exon 33	Intron of CD74(-):16bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149782204::chr6:g.117647170)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	70	10	70
P-0025108-T01-IM6	SOMATIC	TSC2	MIR5093	16	16	2130087	85362269	Intron of TSC2(+):78bp before exon 30	IGR: 22Kb before MIR5093(-)	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.3398-79_chr18:g.85362269inv	PRECISE		MANUAL_OK	5to5	-	83232182	NA	0	14	10	15
P-0025108-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55181342	55223043	Intron of EGFR(+):29Kb before exon 2	Intron of EGFR(+):479bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-28637_c.890-480del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41701	NA	0	46	10	213
P-0025071-T01-IM6	SOMATIC	KAZN	SPEN	1	1	15009164	16255911	Intron of KAZN(+):83Kb after exon 1	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) Rearrangement : c.226+83445:KAZN_c.3176:SPENinv	IMPPRECISE		MANUAL_OK	5to5	-	1246747	NA	0	9	0	9
P-0025071-T01-IM6	SOMATIC	EGFR	ZNF733P	7	7	55223501	61055640	Intron of EGFR(+):21bp before exon 8	IGR: 2Mb before ZNF733P(-)	GRCh37	INVERSION	EGFR (NM_005228) Rearrangement : c.890-22:EGFR_chr7:g.61055640inv	IMPPRECISE		MANUAL_OK	3to3	-	5832139	NA	0	10	0	13
P-0025072-T01-IM6	SOMATIC	CCND2	NRG1	12	8	4385266	32878901	Exon 2 of CCND2(+)	IGR: 300Kb before NRG1(+)	GRCh37	TRANSLOCATION	CCND2 (NM_001759) Rearrangement : t(8;12)(p12;p13.32)(chr8:32878901;chr12:g.4385266)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	17	10	20
P-0025074-T01-IM6	SOMATIC	KIAA1598	FGFR2	10	10	118717051	123240122	Intron of KIAA1598(-):3Kb after exon 4	Intron of FGFR2(-):587bp before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) - KIAA1598 (NM_001127211) Fusion (FGFR2 exon 17 with KIAA1598 exon 5): c.2302-587:FGFR2_c.267+2596:KIAA1598	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:KIAA1598}	4523071	NA	0	17	10	39
P-0025075-T01-IM6	SOMATIC	SND1	BRAF	7	7	127358870	140490546	Intron of SND1(+):2Kb before exon 10	Intron of BRAF(-):3Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1- 9 with BRAF exons 9-18) : c.1039-2471:SND1_c.1141-3162:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13131676	NA	0	47	10	46
P-0025165-T01-IM6	SOMATIC	DDR2	NUF2	1	1	162670587	163313668	5-UTR of DDR2(+):18Kb before coding start	Intron of NUF2(+):8bp after exon 10	GRCh37	INVERSION	DDR2 (NM_006182) - NUF2 (NM_031423) rearrangement: c.-27-18240:DDR2_c.807+8:NUF2inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	643081	NA	0	40	10	40
P-0025168-T01-IM6	SOMATIC	CHD7	APC	8	5	61579704	112043422	IGR: 12Kb before CHD7(+)	Exon 1 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;8)(q22.2;q12.1)(chr5:g.112043422::chr8:g.61579704)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	60	10	95
P-0025176-T01-IM6	SOMATIC	NEURL1	ABL1	10	9	105305536	133760386	Intron of NEURL1(+):25Kb before exon 2	Exon 11 of ABL1(+)	GRCh37	TRANSLOCATION	ABL1 (NM_005157) - NEURL (NM_004210) rearrangement: t(9;10)(q34.12; q24.33)(chr9:g.133760386::chr10:g.105305536)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ABL1:NEURL1}	0	NA	0	5	10	5
P-0025176-T01-IM6	SOMATIC	POLE	PCSK1	12	5	133210987	95682436	Intron of POLE(-):23bp before exon 43	IGR: 44Kb before PCSK1(-)	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(5;12)(q15;q24.33)(chr5:g.95682436::chr12:g.133210987)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	29
P-0025176-T01-IM6	SOMATIC	COMMD1	MTOR	2	1	62259442	11187048	Intron of COMMD1(+):31Kb after exon 2	Intron of MTOR(-):18bp after exon 45	GRCh37	TRANSLOCATION	MTOR (NM_004958) - COMMD1 (NM_152516) rearrangement: t(1;2)(p36.22;p15)(chr1:g.11187048::chr2:g.62259442)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	6	0	6
P-0025176-T01-IM6	SOMATIC	GRM8	BRAF	7	7	126063024	140498396	IGR: 16Kb before GRM8(-)	Intron of BRAF(-):2Kb after exon 7	GRCh37	DELETION	BRAF (NM_004333) rearrangement: chr7:g.126063024_c.980+1766:BRAFdel	IMPPRECISE		MANUAL_OK	3to5	-	14435372	NA	0	7	0	8
P-0025176-T01-IM6	SOMATIC	PARP10	RECQL4	8	8	145059372	145742510	Exon 5 of PARP10(-)	Exon 4 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) - PARP10 (NM_032789) rearrangement: c.278:RECQL4_c.798:PARP10del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RECQL4:PARP10}	683138	NA	0	37	10	37
P-0024631-T01-IM6	SOMATIC	KMT2D	KRT86	12	12	49447056	52691392	Exon 7 of KMT2D(-)	IGR: 4Kb before KRT86(+)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.888_chr12:g.52691392inv	PRECISE		MANUAL_OK	3to3	-	3244336	NA	0	13	10	13
P-0024631-T01-IM6	SOMATIC	ATP1B2	TP53	17	17	7554166	7579903	Promoter of ATP1B2(+):87bp from tx start	Exon 2 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: chr17:g.7554166_c.10del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25737	NA	0	12	10	13
P-0024867-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348963	354336	Intron of AXIN1(-):712bp before exon 6	Exon 5 of AXIN1(-)	GRCh37	INVERSION	AXIN1 (NM_003502) rearrangement: c.1255-712_c.1222inv	PRECISE		MANUAL_OK	3to3	-	5373	NA	0	35	10	36
P-0024867-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151866305	151888499	Exon 41 of KMT2C(-)	Intron of KMT2C(-):3Kb after exon 31	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.9483_c.4660+2595dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	22194	NA	0	38	10	45
P-0025086-T01-IM6	SOMATIC	GLI1	RNF144A	12	2	57864177	7076725	Exon 12 of GLI1(+)	5-UTR of RNF144A(+):60Kb before coding start	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(2;12)(p25.2;q13.3)(chr2:g.7076725::chr12:g.57864177)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RNF144A:GLI1}	0	NA	0	5	10	5
P-0025086-T01-IM6	SOMATIC	AXIN1	CD53	16	1	347118	111333805	Exon 7 of AXIN1(-)	IGR: 80Kb before CD53(+)	GRCh37	TRANSLOCATION	AXIN1 (NM_003502) rearrangement: t(1;16)(p13.3;p13.3)(chr1:g.111333805::chr16:g.347118)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	16
P-0025087-T01-IM6	SOMATIC	GALNTL6	FAT1	4	4	173406850	187627883	Intron of GALNTL6(+):137Kb after exon 5	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: chr4:g.173406850_c.3099:FAT1del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	14221033	NA	0	75	10	80
P-0025139-T01-IM6	SOMATIC	INADL	JAK1	1	1	62509463	65307153	Intron of INADL(+):6Kb after exon 30	Exon 18 of JAK1(-)	GRCh37	INVERSION	JAK1 (NM_002227) - INADL (NM_176877) rearrangement: c.2535:JAK1_c.4032+5742:INADLinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {JAK1:INADL}	2797690	NA	0	59	10	69
P-0025139-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39910579	42872490	Intron of ERG(-):37Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.-56-2374:TMPRSS2_c.39+3700:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2961911	NA	0	115	10	122
P-0025139-T01-IM6	SOMATIC	VCX3B	BCOR	X	X	8440800	39933492	IGR: 8Kb before VCX3B(+)	Exon 4 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.1107:BCOR_chrX:g.8440800del	PRECISE		MANUAL_OK	3to5	-	31492692	NA	0	3	7	3
P-0025144-T01-IM6	SOMATIC	TSHR	TSHR	14	14	81557465	81560719	Exon 5 of TSHR(+)	Intron of TSHR(+):2Kb after exon 6	GRCh37	DELETION	TSHR (NM_000369) rearrangement: c.445_c.545+1767del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3254	NA	0	22	10	22
P-0025144-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113983003	114020793	Intron of PAX8(-):2Kb after exon 10	Intron of PAX8(-):15Kb after exon 2	GRCh37	DUPLICATION	PAX8 (NM_003466) rearrangement: c.25+15154_c.1189+1729dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	37790	NA	0	26	10	28
P-0025146-T01-IM6	SOMATIC	TCF3	ABHD17A	19	19	1612399	1878693	Exon 17 of TCF3(-)	Intron of ABHD17A(-):1Kb before exon 5	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1620:TCF3_chr19:g.1878693inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	266294	NA	0	4	10	32
P-0025146-T01-IM6	SOMATIC	GOT1L1	WHSC1L1	8	8	37800270	38172285	Promoter of GOT1L1(-):8Kb from tx start	Exon 12 of WHSC1L1(-)	GRCh37	DUPLICATION	GOT1L1 (NM_152413) - WHSC1L1 (NM_023034) rearrangement: c.-2723:GOT1L1_c.2122:WHSC1L1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GOT1L1:WHSC1L1}	372015	NA	0	46	10	48
P-0025149-T01-IM6	SOMATIC	SARS2	AKT2	19	19	39415166	40762989	Intron of SARS2(-):2Kb after exon 2	Intron of AKT2(-):28bp before exon 3	GRCh37	DUPLICATION	SARS2 (NM_017827) - AKT2 (NM_001626) rearrangement: c.363+1679:SARS2_c.47-28:AKT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SARS2:AKT2}	1347823	NA	0	6	10	7
P-0025150-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859757	42867731	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 3-10): c.127-1226:TMPRSS2_c.18+10530:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007974	NA	0	42	10	44
P-0025153-T01-IM6	SOMATIC	LOC728175	FAT1	4	4	185165018	187510116	IGR: 97Kb before LOC728175(-)	Exon 27 of FAT1(-)	GRCh37	DUPLICATION	FAT1 (NM_005245) rearrangement: chr4:g.185165018_c.13397dup	PRECISE		MANUAL_OK	5to3	-	2345098	NA	0	28	10	29
P-0025162-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29691768	51184357	Intron of EWSR1(+):460bp before exon 13	Intron of ATF1(+):5Kb before exon 3	GRCh37	TRANSLOCATION	ATF1 (NM_005171) - EWSR1 (NM_013986) rearrangement: t(12;22)(q13.12;q12.2)(chr12:g.51184357::chr22:g.29691768)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ATF1:EWSR1}	0	NA	0	23	10	22
P-0025187-T01-IM6	SOMATIC	ZFHX3	NOX3	16	6	72992119	156231802	Exon 2 of ZFHX3(-)	IGR: 515Kb before NOX3(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(6;16)(q25.3;q22.3)(chr6:g.156231802::chr16:g.72992119)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	26	10	28
P-0025187-T01-IM6	SOMATIC	RTEL1	KCNU1	20	8	62323185	36806047	Exon 28 of RTEL1(+)	IGR: 164Kb before KCNU1(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(8;20)(p11.23;q13.33)(chr8:g.36806047::chr20:g.62323185)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	111	10	108
P-0025187-T02-IM6	SOMATIC	ZFHX3	NOX3	16	6	72992119	156231802	Exon 2 of ZFHX3(-)	IGR: 515Kb before NOX3(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(6;16)(q25.3;q22.3)(chr6:g.156231802::chr16:g.72992119)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	110	10	115
P-0025187-T02-IM6	SOMATIC	RTEL1	KCNU1	20	8	62323185	36806047	Exon 28 of RTEL1(+)	IGR: 164Kb before KCNU1(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(8;20)(p11.23;q13.33)(chr8:g.36806047::chr20:g.62323185)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	735	10	738
P-0025197-T01-IM6	SOMATIC	SESN3	SIK3	11	11	94923088	116894362	Exon 4 of SESN3(-)	Intron of SIK3(-):67Kb before exon 2	GRCh37	DELETION	SIK3 (NM_025164) - SESN3 (NM_144665) rearrangement: c.100-66582:SIK3_c.380:SESN3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SIK3:SESN3}	21971274	NA	0	4	10	5
P-0025198-T01-IM6	SOMATIC	ATRX	MAGT1	X	X	76937671	77133337	Exon 9 of ATRX(-)	Intron of MAGT1(-):2Kb before exon 2	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.3077_chrX:g.77133337del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAGT1:ATRX}	195666	NA	0	4	8	4
P-0025219-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41260057	41266580	5-UTR of CTNNB1(+):6Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-5455_c.377del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6523	NA	0	50	10	53
P-0025245-T01-IM6	SOMATIC	NAB2	MTOR	12	1	57491919	11300310	Promoter of NAB2(+):9Kb from tx start	Intron of MTOR(-):49bp after exon 11	GRCh37	TRANSLOCATION	MTOR (NM_004958)  - STAT6 (NM_003153) rearrangement: t(1;12)(p36.22;q13.3)(chr1:g.11300310::chr12:g.57491919)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {MTOR:NAB2}	0	NA	0	15	10	16
P-0025250-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60566047	123240491	Intron of BICC1(+):296bp before exon 16	Intron of FGFR2(-):956bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused to BICC1 exons 16-21): c.2302-956:FGFR2_c.2182-297:BICC1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {BICC1:FGFR2}	62674444	NA	0	34	10	33
P-0025269-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981206	201982232	Exon 3 of ELF3(+)	Intron of ELF3(+):68bp after exon 6	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.285_c.688+68del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1026	NA	1	19	0	20
P-0025273-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162540328	163148646	Intron of PARK2(-):65Kb before exon 5	Intron of PARK2(-):47bp after exon 1	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.7+48_c.535-65122del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	608318	NA	0	2	5	2
P-0003329-T04-IM6	SOMATIC	LMNA	NTRK1	1	1	156100546	156845200	Exon 3 of LMNA(+)	Intron of NTRK1(+):111bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion (LMNA exons 1-2 fused to NTRK1 exons 12 - 17): c.495:LMNA_c.1355-112:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMNA:NTRK1}	744654	NA	0	7	10	8
P-0003329-T04-IM6	SOMATIC	AXIN1	AXIN1	16	16	343643	344783	Exon 8 of AXIN1(-)	Intron of AXIN1(-):1Kb before exon 8	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.2031_chr16:g.344783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1140	NA	0	3	10	4
P-0003958-T03-IM6	SOMATIC	NOTCH2	NBPF20	1	1	120506319	145103676	Exon 11 of NOTCH2(-)	Intron of NBPF20(+):210Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) SEC22B ( NM_004892) Rearrangement : c.1793:NOTCH2_c.76-232:SEC22Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH2:NBPF20}	24597357	NA	0	5	7	5
P-0020722-T02-IM6	SOMATIC	HACE1	ROS1	6	6	105138089	117709166	IGR: 38Kb before HACE1(-)	Exon 13 of ROS1(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.1791:ROS1_chr6:g.105138089inv	PRECISE		MANUAL_OK	5to5	-	12571077	NA	0	6	10	5
P-0024845-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684485	32417430	Intron of EWSR1(+):109bp before exon 9	Intron of WT1(-):372bp after exon 7	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32417430::chr22:g.29684485)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {WT1:EWSR1}	0	NA	0	88	10	144
P-0025200-T01-IM6	SOMATIC	ALK	EML4	2	2	29448298	42498558	Intron of ALK(-):28bp after exon 19	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (AML4 exons 1-5 fused with ALK exons 20-29, including the kinase domain of ALK): c.667+6687:EML4_c.3172+29:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13050260	NA	0	6	10	6
P-0025207-T01-IM6	SOMATIC	RICTOR	FYB	5	5	38944608	39130440	Exon 36 of RICTOR(-)	Intron of FYB(-):251bp after exon 10	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.4853:RICTOR_chr5:g.39130440inv	PRECISE		MANUAL_OK	3to3	-	185832	NA	0	2	4	2
P-0025215-T01-IM6	SOMATIC	RET	GEMIN5	10	5	43611067	154274993	Intron of RET(+):883bp after exon 11	Intron of GEMIN5(-):658bp after exon 24	GRCh37	TRANSLOCATION	GEMIN5 (NM_015465) - RET (NM_020975) rearrangement: t(5;10)(q33.2;q11.21)(chr5:g.154274993::chr10:g.43611067)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {GEMIN5:RET}	0	NA	0	19	0	23
P-0025216-T01-IM6	SOMATIC	KMT2D	RHEBL1	12	12	49442520	49465010	Exon 13 of KMT2D(-)	Promoter of RHEBL1(-):7Kb from tx start	GRCh37	DELETION	RHEBL1 (NM_144593) - KMT2D (NM_003482) rearrangement: c.-1442:RHEBL1_c.4053:KMT2Ddel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RHEBL1:KMT2D}	22490	NA	0	11	10	11
P-0025224-T01-IM6	SOMATIC	KMT2D	GNA12	12	7	49433712	2773245	Exon 31 of KMT2D(-)	Intron of GNA12(-):110bp before exon 3	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - GNA12 (NM_007353) rearrangement: t(7;12)(p22.2;q13.12)(chr7:g.2773245::chr12:g.49433712)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2D:GNA12}	0	NA	0	6	10	7
P-0025224-T01-IM6	SOMATIC	SMARCA4	SNAR-E	19	19	11107131	47315659	Intron of SMARCA4(+):38bp before exon 11	IGR: 18Kb before SNAR-E(-)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.1762-39:SMARCA4_chr19:g.47315659inv	PRECISE		MANUAL_OK	5to5	-	36208528	NA	0	12	10	15
P-0025224-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47165457	47176490	Exon 3 of SETD2(-)	Intron of SETD2(-):8Kb before exon 2	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.72-8337_c.669del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11033	NA	0	4	10	4
P-0025287-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55206276	55223466	Intron of EGFR(+):4Kb before exon 2	Intron of EGFR(+):56bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion(EGFR exons 2-7 get  : c.89-3703_c.890-57del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	17190	NA	0	267	10	318
P-0006424-T03-IM6	SOMATIC	KMT2C	PUM1	7	1	151873311	31532327	Exon 38 of KMT2C(-)	Exon 2 of PUM1(-)	GRCh37	TRANSLOCATION	PUM1 (NM_001020658) - KMT2C (NM_170606): t(1;7)(p35.2;q36.1)(chr1:g.31532327::chr7:g.151873311)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PUM1:KMT2C}	0	NA	0	11	10	11
P-0025326-T01-IM6	SOMATIC	KCNQ3	DROSHA	8	5	133361970	31464126	Intron of KCNQ3(-):130Kb after exon 1	Intron of DROSHA(-):216bp after exon 19	GRCh37	TRANSLOCATION	DROSHA (NM_013235) - KCNQ3 (NM_004519) rearrangement: t(5;8)(p13.3;q24.22)(chr5:g.31464126::chr8:g.133361970)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {DROSHA:KCNQ3}	0	NA	0	13	10	13
P-0025343-T01-IM6	SOMATIC	CDK12	GCNT2	17	6	37687185	10592776	Exon 14 of CDK12(+)	Intron of GCNT2(+):29Kb before exon 4	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - GCNT2 (NM_145655) rearrangement: t(6;17)(p24.3;q12)(chr6:g.10592776::chr17:g.37687185)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	31
P-0025328-T01-IM6	SOMATIC	SMO	AHCYL2	7	7	128850827	128876005	Exon 10 of SMO(+)	Intron of AHCYL2(+):11Kb after exon 1	GRCh37	INVERSION	SMO (NM_005631) - AHCYL2 (NM_015328) rearrangement: c.1674:SMO_c.363+10725:AHCYL2inv	PRECISE		MANUAL_OK	5to5	-	25178	NA	0	17	10	19
P-0025346-T01-IM6	SOMATIC	NRG3	PTEN	10	10	84322110	89720957	Intron of NRG3(+):176Kb before exon 4	Intron of PTEN(+):82bp after exon 8	GRCh37	INVERSION	NRG3 (NM_001010848) - PTEN (NM_000314) rearrangement: c.954-176223:NRG3_c.1026+82:PTENinv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5398847	NA	0	5	10	7
P-0025349-T01-IM6	SOMATIC	LINC01370	GNAS	20	20	38848190	57485603	IGR: 215Kb before LINC01370(+)	Intron of GNAS(+):134bp before exon 13	GRCh37	DELETION	GNAS (NM_000516) rearrangement: chr20:g.38848190_c.1039-135del	PRECISE		MANUAL_OK	3to5	-	18637413	NA	0	17	10	20
P-0001242-T05-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860331	42867993	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.127-1488:TMPRSS2_c.18+9956:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007662	NA	0	39	10	40
P-0025355-T01-IM6	SOMATIC	TMPRSS2	RIPK4	21	21	42879704	43177133	Intron of TMPRSS2(-):172bp after exon 1	Intron of RIPK4(-):157bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement : c.55+173:TMPRSS2_c.183-157:RIPK4inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	297429	NA	0	24	10	34
P-0025355-T01-IM6	SOMATIC	ZNF70	SMARCB1	22	22	24081613	24129545	Promoter of ZNF70(-):2Kb from tx start	Intron of SMARCB1(+):96bp after exon 1	GRCh37	DUPLICATION	SMARCB1 (NM_003073) Rearrangement : c.*4374:ZNF70_c.93+96dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	47932	NA	0	21	10	21
P-0025390-T01-IM6	SOMATIC	WHSC1L1	FGFR1	8	8	38201702	38274750	Intron of WHSC1L1(-):3Kb after exon 2	Intron of FGFR1(-):73bp after exon 13	GRCh37	DELETION	FGFR1 (NM_001174067) - WHSC1L1 (NM_023034) rearrangement: c.1756+74:FGFR1_c.675+3313:WHSC1L1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGFR1:WHSC1L1}	73048	NA	0	5	0	5
P-0025398-T01-IM6	SOMATIC	CNTN1	ARID2	12	12	41336679	46211609	Intron of CNTN1(+):719bp before exon 11	Exon 5 of ARID2(+)	GRCh37	DUPLICATION	ARID2 (NM_152641) - CNTN1 (NM_001843) rearrangement: c.575:ARID2_c.1380-720:CNTN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARID2:CNTN1}	4874930	NA	0	10	10	11
P-0025401-T01-IM6	SOMATIC	CDK12	NEUROD2	17	17	37627700	37748036	Exon 2 of CDK12(+)	IGR: 12Kb before NEUROD2(-)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.1615:CDK12_chr17:g.37748036del	PRECISE		MANUAL_OK	3to5	-	120336	NA	0	24	10	24
P-0025401-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37882980	37884495	Intron of ERBB2(+):68bp after exon 24	3-UTR of ERBB2(+):28Kb after coding stop	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.2970+68:ERBB2_chr17:g.37884495del	PRECISE		MANUAL_OK	3to5	-	1515	NA	0	10	10	10
P-0000252-T01-IM3	SOMATIC	CUBN	RET	10	10	16947846	43610494	Intron of CUBN(-): 356bp after exon 50	Intron of RET(+): 310bp after exon 11	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Antisense fusion	26662648	NA	0	17	30	19
P-0000252-T01-IM3	SOMATIC	KIF5B	RET	10	10	32313497	43610597	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 413bp after exon 11	GRCh37	INVERSION	RET (NM_020975) Inversion (c.2136+413_KIF5B:c.1726-153inv)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297100	NA	0	9	22	8
P-0000289-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1735129	1806109	Intron of TACC3(+): 2Kb before exon 7	Exon 9 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142)  TACC3 (NM_006342) Duplication (c.1128_c.1592-1871dup)	PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	70980	NA	0	12	21	13
P-0000373-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39842043	42874110	Intron of ERG(-): 24Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) c.56-3994_c.19-24499del	PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3032067	NA	0	5	10	5
P-0000509-T02-IM5	SOMATIC	MALT1	IQCF5	18	3	56376920	51906799	Intron of MALT1(+): 132bp after exon 5	IGR: 939bp before IQCF5(-)	GRCh37	TRANSLOCATION	MALT1 (NM_006785) Rearrangement : t(3;18)(3p21.2;18q21.32)(chr3:g.51906799::chr18:g.56376920)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	11	13
P-0000639-T01-IM3	SOMATIC	TBL3	TSC2	16	16	2025262	2136810	Exon 8 of TBL3(+)	Exon 37 of TSC2(+)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (TSC2-TBL3)	111548	NA	0	27	24	27
P-0000649-T01-IM3	SOMATIC	ROS1	CD74	6	5	117649880	149783491	Intron of ROS1(-): 612bp after exon 32	Intron of CD74(-): 616bp before exon 7	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: out of frame (CD74-ROS1)	0	NA	0	14	25	0
P-0001085-T01-IM3	SOMATIC	NF2	GRM4	22	6	30057107	34105768	Intron of NF2(+): 87bp before exon 8	IGR: 4Kb after GRM4(-)	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	5to5	-	0	NA	0	48	51	48
P-0001204-T02-IM5	SOMATIC	APC	APC	5	5	112179446	112183450	Exon 16 of APC(+)	IGR: 2Kb after APC(+)	GRCh37	DELETION	c.8155_g.112183450del	PRECISE		MANUAL_OK	3to5	-	4004	NA	0	28	37	30
P-0001253-T01-IM3	SOMATIC	ATRX	ATRX	X	X	76871989	76902147	Intron of ATRX(-): 92bp after exon 22	Intron of ATRX(-): 5Kb after exon 15	GRCh37	DUPLICATION	None	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons: out of frame	30158	NA	0	21	36	28
P-0001260-T01-IM3	SOMATIC	CDH1	CDH1	16	16	68842833	68847043	Intron of CDH1(+): 82bp after exon 5	Intron of CDH1(+): 173bp before exon 9	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	4210	NA	0	9	21	9
P-0001308-T01-IM3	SOMATIC	NOTCH3	NOTCH3	19	19	15300128	15303707	Exon 7 of NOTCH3(-)	Intron of NOTCH3(-): 377bp before exon 3	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	3579	NA	0	24	37	27
P-0001319-T03-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878050	42879131	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 746bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11) : c.55+746:TMPRSS2_c.40-60506:ERG_del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001081	NA	0	8	8	11
P-0001325-T02-IM5	SOMATIC	IRS2	ZNF503	13	10	110408654	77155600	Exon 2 of IRS2(-)	IGR: 2Kb before ZNF503(-)	GRCh37	TRANSLOCATION	t(13;10)(q34;q22.2)(chr13:110408654::chr10:77155600)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	30	54	30
P-0001377-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29683643	128660474	Intron of EWSR1(+): 520bp after exon 6	Intron of FLI1(+): 9Kb after exon 5	GRCh37	TRANSLOCATION	None	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	17	26	0
P-0001384-T01-IM3	SOMATIC	NOTCH3	WDR89	19	14	15308408	64115182	Intron of NOTCH3(-): 19bp before exon 2	IGR: 7Kb after WDR89(-)	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to3	-	0	NA	0	12	19	12
P-0001445-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55179677	55223121	Intron of EGFR(+): 30Kb before exon 2	Intron of EGFR(+): 402bp before exon 8	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	43444	NA	0	4	8	4
P-0001449-T02-IM5	SOMATIC	TMPRSS2	ETV1	21	7	42871485	14003184	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of ETV1(-): 14Kb after exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) Fusion  (TMPRSS2 exon 1 fused with ETV1 exon 6) :  t(21;7)(q22.3;p21.2)(chr21:g.42871485::chr7:g.14003184)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (TMPRSS2-ETV1)	0	NA	0	102	0	124
P-0001495-T02-IM5	SOMATIC	EP300	MEI1	22	22	41565545	42141999	Exon 26 of EP300(+)	Exon 14 of MEI1(+)	GRCh37	DUPLICATION	MEI1 (NM_152513) - EP300 (NM_001429)  Rearrangement :  c.1649:MEI1_c.4211:EP300dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MEI1-EP300)	576454	NA	0	7	14	7
P-0001539-T01-IM3	SOMATIC	STK11	STK11	19	19	1211254	1220534	Intron of STK11(+): 4Kb after exon 1	Intron of STK11(+): 30bp after exon 4	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion of 3 exons: out of frame	9280	NA	0	5	5	5
P-0001701-T01-IM3	SOMATIC	ATRX	ATRX	X	X	76883650	76889167	Intron of ATRX(-): 5Kb after exon 19	Exon 18 of ATRX(-)	GRCh37	DUPLICATION	ATRX (NM_000489) duplication: c.4843_c.5134+5045dup	PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	5517	NA	0	11	36	13
P-0001776-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39873309	42869980	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 66bp after exon 2	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Protein fusion: in frame (ERG-TMPRSS2)	2996671	NA	0	6	11	6
P-0001784-T01-IM3	SOMATIC	DIP2B	NOTCH4	12	6	50969571	32163293	Intron of DIP2B(+): 50Kb before exon 2	Exon 30 of NOTCH4(-)	GRCh37	TRANSLOCATION	DIP2B (NM_173602) - NOTCH4 (NM_004557) Translocation :  t(12;6)(q13.12;p21.32)(chr12:g.50969571::chr6:32163293)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (DIP2B-NOTCH4)	0	NA	0	69	95	67
P-0001832-T02-IM6	SOMATIC	BRAF	AGK	7	7	140494489	141292374	Intron of BRAF(-): 222bp before exon 8	Intron of AGK(+): 572bp before exon 3	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion (AGK exon 1 fused in-frame to BRAF exons 8-18): c.102-572:AGK_c.981-222:BRAFinv	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGK-BRAF)	797885	NA	0	5	0	4
P-0002117-T01-IM3	SOMATIC	CLIP4	ALK	2	2	29372923	29447364	Intron of CLIP4(+): 3Kb before exon 9	Intron of ALK(-): 963bp after exon 19	GRCh37	DELETION	ALK (NM_004304) - CLIP4 (NM_024692) Deletion :  c.1022-2628:CLIP4_c.3172+963:ALKdel (see note)	PRECISE		AUTO_OK	3to5	Antisense fusion	74441	NA	0	25	42	29
P-0002294-T02-IM5	SOMATIC	MET	MET	7	7	116411704	116445050	Exon 13 of MET(+)	IGR: 7Kb after MET(+)	GRCh37	INVERSION	MET (NM_000245) Rearrangement : c.2883:MET_chr7:g.116445050inv	PRECISE		MANUAL_OK	5to5	-	33346	NA	0	21	22	10
P-0002305-T01-IM3	SOMATIC	METTL2B	BRAF	7	7	128195255	140491674	IGR: 52Kb after METTL2B(+)	Intron of BRAF(-): 2Kb after exon 8	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	-	12296419	NA	0	102	177	94
P-0002386-T03-IM5	SOMATIC	KLF4	KLF4	9	9	110250122	110399252	Exon 3 of KLF4(-)	IGR: 152Kb before KLF4(-)	GRCh37	INVERSION	KLF4 (NM_004235) rearrangement: c.553_chr9:g.110399252inv	PRECISE		MANUAL_OK	5to5	-	149130	NA	0	11	25	11
P-0002395-T01-IM3	SOMATIC	CTNNB1	CTNNB1	3	3	41263417	41266858	5-UTR of CTNNB1(+): 2Kb before coding start	Exon 5 of CTNNB1(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	3441	NA	0	32	51	35
P-0002398-T01-IM3	SOMATIC	TMPRSS2	ARF4	21	3	42867618	57572612	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ARF4(-): 2Kb before exon 2	GRCh37	TRANSLOCATION	ARF4 (NM_001660) - TMPRSS2 (NM_001135099) Translocation :   t(3;21)(p14.3;q22.3)(chr3:g.57572612::chr21:g.42867618)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (ARF4-TMPRSS2)	0	NA	0	5	13	0
P-0002398-T01-IM3	SOMATIC	TMPRSS2	ETV1	21	7	42867877	13988492	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 10Kb before exon 7	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) Translocation :   t(21;7)(q22.3;p21.2)(chr21:g.42867877::chr7:g.13988492)	PRECISE		AUTO_OK	5to3	Protein fusion: out of frame (TMPRSS2-ETV1)	0	NA	0	25	35	0
P-0002436-T01-IM3	SOMATIC	DNMT1	DNMT1	19	19	10246516	10290226	Exon 39 of DNMT1(-)	Intron of DNMT1(-): 637bp after exon 5	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	43710	NA	0	5	59	33
P-0002694-T02-IM5	SOMATIC	KIF5B	RET	10	10	32314319	43611682	Intron of KIF5B(-): 2Kb before exon 16	Intron of RET(+): 350bp before exon 12	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297363	NA	0	28	56	27
P-0002705-T01-IM3	SOMATIC	ERBB2	C1orf87	17	1	37883789	60472564	Exon 26 of ERBB2(+)	Intron of C1orf87(-): 4Kb after exon 9	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ERBB2-C1orf87)	0	NA	0	55	29	65
P-0002895-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39861416	42871276	Intron of ERG(-): 9Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3009860	NA	0	8	24	12
P-0002978-T04-IM5	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) reciprocal fusion (ETV6 exons 1-5 fused with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12028576::chr15:g.88506571)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	1	87	24	81
P-0002990-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880577	42869167	Intron of ERG(-): 63Kb before exon 4	Intron of TMPRSS2(-): 879bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -  ERG (NM_004449) Fusion (TMPRSS2 exons 1 to 2 fused to ERG exons 4 to 10) : c.126+879:TMPRSS2_c.40-63033:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2988590	NA	0	102	91	152
P-0003108-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32913614	32915532	Exon 11 of BRCA2(+)	Intron of BRCA2(+): 199bp after exon 11	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1918	NA	1	77	82	87
P-0003108-T01-IM5	SOMATIC	HMHA1	STK11	19	19	1071286	1207046	Intron of HMHA1(+): 2Kb before exon 3	Exon 1 of STK11(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (HMHA1-STK11)	135760	NA	0	25	47	28
P-0003108-T01-IM5	SOMATIC	AXL	AXL	19	19	41725235	41726497	5-UTR of AXL(+): 63bp before coding start	Intron of AXL(+): 44bp before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript	1262	NA	0	22	41	30
P-0003108-T01-IM5	SOMATIC	KLHL13	RB1	X	13	117305158	49051053	IGR: 54Kb after KLHL13(-)	Intron of RB1(+): 74bp after exon 25	GRCh37	TRANSLOCATION		IMPRECISE		MANUAL_OK	3to3	-	0	NA	0	21	0	19
P-0003271-T01-IM5	SOMATIC	MED23	TNFAIP3	6	6	131944867	138199875	Intron of MED23(-): 265bp before exon 5	Exon 7 of TNFAIP3(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	6255008	NA	0	23	51	25
P-0003271-T01-IM5	SOMATIC	TNFAIP3	PERP	6	6	138201318	138367567	Exon 8 of TNFAIP3(+)	IGR: 42Kb before PERP(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	166249	NA	0	18	37	18
P-0003395-T01-IM5	SOMATIC	MX1	TMPRSS2	21	21	42831327	42840334	IGR: 187bp after MX1(+)	Exon 12 of TMPRSS2(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	9007	NA	0	22	42	25
P-0003453-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67591330	67591942	Intron of PIK3R1(+): 14bp after exon 8	Intron of PIK3R1(+): 57bp before exon 9	GRCh37	DELETION		IMPRECISE		MANUAL_OK	3to5	Deletion within intron	612	NA	1	75	0	89
P-0003466-T01-IM5	SOMATIC	RB1	RB1	13	13	49049372	49054099	Intron of RB1(+): 1Kb before exon 25	Intron of RB1(+): 35bp before exon 27	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: out of frame	4727	NA	0	82	75	88
P-0003540-T01-IM5	SOMATIC	FLT3	FLT3	13	13	28635314	28636025	Intron of FLT3(-): 690bp after exon 3	Exon 3 of FLT3(-)	GRCh37	DELETION	c.368+690_c.347del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	711	NA	0	5	0	9
P-0003551-T02-IM6	SOMATIC	SOCS1	SOCS1	16	16	11349300	11350438	Exon 2 of SOCS1(-)	Promoter of SOCS1(-):2Kb from tx start	GRCh37	INVERSION	SOCS1 (NM_003745) rearrangement: c.-553_c.36inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1138	NA	0	5	8	5
P-0003554-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685775	128664769	Intron of EWSR1(+): 627bp before exon 9	Intron of FLI1(+): 10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) and FLI1 (NM_002017) fusion (EWSR1 exon 9 fused to FLI1 exon 6): t(22;11)( q12.2; q24.3)( chr22:g.29685775::chr11:g.128664769)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	25	36	40
P-0003597-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39858593	42871994	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1878:TMPRSS2_c.18+11694:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3013401	NA	0	59	56	66
P-0003615-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14227077	14628134	Intron of PRKACA(-): 1Kb after exon 1	Intron of DNAJB1(-): 276bp before exon 2	GRCh37	DELETION	c.212-276:DNAJB1_c.46+1237:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	401057	NA	0	12	33	13
P-0003762-T01-IM5	SOMATIC	CDK12	ADCY9	17	16	37646665	4033430	Intron of CDK12(+): 145bp before exon 3	Exon 7 of ADCY9(-)	GRCh37	TRANSLOCATION	t(16;17)(p13.3;q12)(chr16:g.4033430::chr17:g.37646665)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (ADCY9-CDK12)	0	NA	0	8	18	8
P-0003779-T01-IM5	SOMATIC	IGF1R	IGF1R	15	15	99438142	99440041	Intron of IGF1R(+): 2Kb before exon 4	Exon 4 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.954-1844_1009del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1899	NA	1	39	98	88
P-0004102-T01-IM5	SOMATIC	KDR	UGT2A3	4	4	55970787	69761801	Intron of KDR(-): 23bp after exon 13	IGR: 32Kb before UGT2A3(-)	GRCh37	INVERSION	KDR (NM_002253) - UGT2A3 (NM_024743) rearrangement: c.1987+23:KDR_g.69761801inv	PRECISE		MANUAL_OK	3to3	-	13791014	NA	0	17	30	17
P-0004102-T01-IM5	SOMATIC	SPOCK3	FAT1	4	4	167982111	187630178	Intron of SPOCK3(-): 2Kb after exon 4	Exon 2 of FAT1(-)	GRCh37	INVERSION	SPOCK3 (NM_016950) - FAT1 (NM_005245) rearrangement: c.244+1532:SPOCK3_c.804:FAT1inv	PRECISE		MANUAL_OK	3to3	-	19648067	NA	0	28	30	28
P-0004119-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55120773	55222770	Intron of EGFR(+): 34Kb after exon 1	Intron of EGFR(+): 753bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:  c.88+33715_890-753del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	101997	NA	0	85	254	465
P-0004242-T01-IM5	SOMATIC	DLAT	MLL	11	11	111906585	118342711	Intron of DLAT(+): 1Kb before exon 6	Exon 3 of MLL(+)	GRCh37	INVERSION	DLAT (NM_001931) - MLL (NM_001197104) rearrangement: c.788-141:DLAT_c.837:MLLinv	PRECISE		MANUAL_OK	5to5	-	6436126	NA	0	30	48	20
P-0004285-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39860128	42872646	Intron of ERG(-): 10Kb after exon 1	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-2530:TMPRSS2_c.18+10159:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3012518	NA	0	21	22	20
P-0004299-T02-IM5	SOMATIC	SIPA1L1	MLL	14	11	71995903	118361950	Promoter of SIPA1L1(+): 139bp from tx start	Exon 14 of MLL(+)	GRCh37	TRANSLOCATION	MLL (NM_001197104) rearrangement: t(11;14)(q23.3;q24.2)(chr11:g.118361950::chr14:g.71995903)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	7	6	7
P-0004387-T02-IM5	SOMATIC	TP53	TP53	17	17	7579511	7580798	Exon 4 of TP53(-)	5-UTR of TP53(-): 886bp before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-858_c.176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1287	NA	0	6	20	6
P-0004401-T01-IM5	SOMATIC	LATS2	ATP8A2	13	13	21549524	25969823	Intron of LATS2(-): 21bp before exon 8	Intron of ATP8A2(+): 23Kb after exon 1	GRCh37	INVERSION	ATP8A2 (NM_016529) - LATS2( NM_01457) rearrangement: c.76+23397:ATP8A2_c.2773-21:LATS2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (ATP8A2-LATS2)	4420299	NA	0	10	20	9
P-0004414-T01-IM5	SOMATIC	SDC4	ROS1	20	6	43957039	117651952	Intron of SDC4(-): 984bp before exon 5	Intron of ROS1(-): 1Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-4 fused with ROS1 exons 32-43): t(6;20) (q22.1; q13.12)(chr6:g.117651952::chr20:g.43957039)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (SDC4-ROS1)	0	NA	0	8	0	8
P-0004545-T01-IM5	SOMATIC	ERBB3	SEMA3A	12	7	56481635	83729009	Exon 6 of ERBB3(+)	Intron of SEMA3A(-): 11Kb after exon 4	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) - SEMA3A (NM_006080) translocation: t(12,7)(q13.2; q21.11) (chr12:g.56481635::chr7:g.83729009)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	39	0	39
P-0004545-T01-IM5	SOMATIC	DIS3	PIBF1	13	13	73352572	73373841	Intron of DIS3(-): 54bp before exon 3	Intron of PIBF1(+): 2Kb after exon 5	GRCh37	DELETION	DIS3 (NM_014953) -PIBF1(NM_006346) rearrangement: c.387-54:DIS3_c.672+1677:PIBF1del	PRECISE		MANUAL_OK	3to5	-	21269	NA	0	21	19	20
P-0004551-T01-IM5	SOMATIC	ACCN1	STAT3	17	17	31612231	40481324	Intron of ACCN1(-): 6Kb after exon 1	Intron of STAT3(-): 104bp after exon 14	GRCh37	DELETION	STAT3  (NM_139276) -AACN1(NM_001094) Rearangement : c.556-173146:ACCN1_c.1281+104:STAT3del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (STAT3-ACCN1)	8869093	NA	0	13	10	13
P-0004616-T01-IM5	SOMATIC	FH	FH	1	1	241669467	241671901	Exon 6 of FH(-)	Intron of FH(-): 2bp after exon 5	GRCh37	DELETION	FH(NM_000143) : Rearrangement : c.740_738+2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2434	NA	0	47	51	47
P-0004616-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49430922	49434369	Exon 34 of MLL2(-)	Exon 31 of MLL2(-)	GRCh37	DELETION	MLL2(NM_003482) Rearrangement : c.10217_7184del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3447	NA	0	14	9	14
P-0004649-T01-IM5	SOMATIC	NSD1	NBPF4	5	1	176562519	108862070	Exon 2 of NSD1(+)	IGR: 96Kb before NBPF4(-)	GRCh37	TRANSLOCATION	NSD1(NM_022455) Rearrangement : t(5;1)(5q35.2;1p13.3)(chr5:g.176562519::chr1:g.108862070)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	14	21
P-0004659-T01-IM5	SOMATIC	NBN	NBN	8	8	90959521	90967613	Intron of NBN(-): 531bp after exon 12	Exon 10 of NBN(-)	GRCh37	DUPLICATION	NBN (NM_002485) rearrangement: c.1295_c.1914+531dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	8092	NA	0	9	17	9
P-0004669-T01-IM5	SOMATIC	MIR31	CDKN2A	9	9	21656953	21970867	IGR: 145Kb before MIR31(-)	Intron of CDKN2A(-): 34bp after exon 2	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195)  rearrangement: chr9:g.21656953_c.*380+34inv    CDKN2Ap16INK4A (NM_000077) rearrangement: chr9:g.21656953_c.457+34inv	PRECISE		MANUAL_OK	5to5	-	313914	NA	0	25	32	26
P-0004837-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55174861	55221995	Intron of EGFR(+): 35Kb before exon 2	Intron of EGFR(+): 150bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17914_c.890-295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	47134	NA	0	91	68	89
P-0004860-T01-IM5	SOMATIC	ERBB4	ERBB4	2	2	212589890	212857303	Exon 6 of ERBB4(-)	Intron of ERBB4(-): 45Kb before exon 3	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.235-44962_c.652del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	267413	NA	0	31	37	31
P-0004867-T01-IM5	SOMATIC	C19orf12	AKT2	19	19	30198481	40744060	Intron of C19orf12(-): 680bp after exon 2	Intron of AKT2(-): 62bp before exon 9	GRCh37	DUPLICATION	C19orf12 (NM_001031726) - AKT2 (NM_001626) rearrangement: c.193+680:C19orf12_c.709-62:AKT2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (C19orf12-AKT2)	10545579	NA	0	35	34	35
P-0004918-T01-IM5	SOMATIC	SOX9	NPTX1	17	17	70120231	78453501	Exon 3 of SOX9(+)	IGR: 3Kb after NPTX1(-)	GRCh37	INVERSION	SOX9(NM_000346) Rearrangement : c.1233:SOX9_chr17:g.78453501inv	PRECISE		MANUAL_OK	5to5	-	8333270	NA	0	9	28	8
P-0004938-T01-IM5	SOMATIC	NF1	NF1	17	17	29449167	29483104	Intron of NF1(+): 27Kb after exon 1	Exon 2 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement : c.60+26780_164del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	33937	NA	0	8	18	8
P-0004961-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55241471	55269311	Intron of EGFR(+): 143bp before exon 18	Intron of EGFR(+): 117bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement : c.2062-143_3115-117dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	27840	NA	0	4	3	2
P-0005085-T01-IM5	SOMATIC	ST6GALNAC5	FUBP1	1	1	77196025	78414944	IGR: 137Kb before ST6GALNAC5(+)	Exon 19 of FUBP1(-)	GRCh37	DUPLICATION	FUBP1(NM_003902) Rearrangement : chr15:g.23699654_c.1822:FUBP1dup	PRECISE		MANUAL_OK	5to3	-	1218919	NA	0	13	23	13
P-0005091-T01-IM5	SOMATIC	CARD11	CARD11	7	7	2983810	2990569	Intron of CARD11(-): 36bp after exon 5	Intron of CARD11(-): 3Kb before exon 3	GRCh37	DUPLICATION	CARD11 (NM_032415) rearrangement: c.8-3148_c.684+36dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	6759	NA	0	5	6	5
P-0005106-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37679957	37682419	Intron of CDK12(+): 970bp before exon 12	Exon 13 of CDK12(+)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3096-970_c.3610inv	PRECISE		MANUAL_OK	5to5	-	2462	NA	0	52	31	48
P-0005113-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55196384	55221948	Intron of EGFR(+): 14Kb before exon 2	Intron of EGFR(+): 103bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-13595_c.883del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	25564	NA	0	39	41	37
P-0005220-T01-IM5	SOMATIC	NUB1	MLL3	7	7	151075514	151878666	3-UTR of NUB1(+): 1Kb after coding stop	Exon 36 of MLL3(-)	GRCh37	INVERSION	MLL3 (NM_170606) Rearrangement: g.15107551_c.62794inv	PRECISE		MANUAL_OK	5to5	-	803152	NA	0	102	111	125
P-0005220-T01-IM5	SOMATIC	MLL3	DPP6	7	7	151878843	153526905	Exon 36 of MLL3(-)	IGR: 58Kb before DPP6(+)	GRCh37	INVERSION	MLL3 (NM_170606) Rearrangement: c.6102_g.153526905inv	PRECISE		MANUAL_OK	3to3	-	1648062	NA	0	102	183	399
P-0005334-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55136843	55221792	Intron of EGFR(+): 50Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228), vIII intragenic deletion: c.88+49785_c.836del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	84949	NA	1	102	889	1643
P-0005393-T01-IM5	SOMATIC	CIC	CSMD1	19	8	42792003	4567111	Exon 6 of CIC(+)	Intron of CSMD1(-): 72Kb before exon 2	GRCh37	TRANSLOCATION	CSMD1 (NM_033225) - CIC (NM_015125) rearrangement: t(8;19)(p23.2;q13.2)(chr8:g.4567111::chr19:g.42792003)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CSMD1-CIC)	0	NA	0	89	42	84
P-0005409-T02-IM5	SOMATIC	TERT	SLC6A3	5	5	1295345	1371874	Promoter of TERT(-): 183bp from tx start	IGR: 21Kb before SLC6A3(-)	GRCh37	DELETION	TERT (NM_198253)  Rearrangement: c.-241:TERT_chr5:g.1371874del	PRECISE		MANUAL_OK	3to5	-	76529	NA	0	68	79	68
P-0005445-T02-IM5	SOMATIC	MLL3	MLL3	7	7	151860216	152044704	Exon 43 of MLL3(-)	Intron of MLL3(-): 11Kb after exon 2	GRCh37	DUPLICATION	MLL3 (NM_170606) rearrangement: c.250+10968_c.10446dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	184488	NA	0	70	61	61
P-0005582-T01-IM5	SOMATIC	PLK2	PDE4D	5	5	57751339	58846206	Intron of PLK2(-): 27bp after exon 11	Intron of PDE4D(-): 36Kb after exon 1	GRCh37	DUPLICATION	PLK2 (NM_006622) -PDE4D (NM_001104631) rearrangement: c.1625+27: PLK2_c.456-334412:PDE4Ddup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (PLK2-PDE4D)	1094867	NA	0	38	50	36
P-0005607-T02-IM6	SOMATIC	EWSR1	NR4A3	22	9	29692583	102588942	Intron of EWSR1(+):225bp after exon 13	5-UTR of NR4A3(+):110bp before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - NR4A3 (NM_006981) fusion (EWSR1 exons 1-13 fused to NR4A3 exons 3-8): t(9;22)(q22.33;q12.2)(chr9:g.102588942::chr22:g.29692583)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {EWSR1:NR4A3}	0	NA	0	29	10	30
P-0005613-T01-IM5	SOMATIC	PTPRS	ACER1	19	19	5212045	6328337	Exon 23 of PTPRS(-)	Intron of ACER1(-): 5Kb after exon 1	GRCh37	INVERSION	PTRPRS (NM_002850) - ACER1 (NM_133492) rearrangement : c.4986:PTPRS_c.93+5133:ACER1inv	PRECISE		MANUAL_OK	3to3	-	1116292	NA	0	89	75	74
P-0005613-T01-IM5	SOMATIC	PTPRS	UNC5D	19	8	5211611	35547181	Exon 24 of PTPRS(-)	Intron of UNC5D(+): 3Kb after exon 7	GRCh37	TRANSLOCATION	PTPRS (NM_002850) - UNC5D (NM_080872) rearrangement : t(8;19)(8p12;19p13.3)(chr8:g.35547181::chr19:g.5211611)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (PTPRS-UNC5D)	0	NA	0	102	53	127
P-0005636-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39834655	42875116	Intron of ERG(-): 17Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon2)  :  c.55+4761:TMPRSS2_c.19-17111:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3040461	NA	0	25	38	23
P-0005693-T02-IM5	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21972222	21974514	Intron of CDKN2A(-): 1Kb before exon 2	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) Rearrangement :  c.317-1015_c.317-3307del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2292	NA	0	102	144	104
P-0005693-T02-IM5	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21972222	21974514	Intron of CDKN2A(-): 1Kb before exon 2	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.151-1015_c.150+163del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2292	0	0	102	144	104
P-0005711-T02-IM6	SOMATIC	KIF5B	ALK	10	2	32304765	29449548	Intron of KIF5B(-): 178bp before exon 25	Intron of ALK(-): 240bp after exon 18	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - ALK (NM_004304) fusion (KIF5B exons 1-24 fused with ALK exons 19-29) : t(2;10)(p23.2;p11.22)(chr2:g.29449548::chr10:g.32304765)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIF5B-ALK)	0	NA	0	102	0	115
P-0005711-T02-IM6	SOMATIC	DIS3	DAOA	13	13	73333972	105233055	Exon 21 of DIS3(-)	IGR: 885Kb before DAOA(+)	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement: c.2838_chr13:g.105233055inv	PRECISE		MANUAL_OK	5to5	-	31899083	NA	0	25	46	24
P-0005768-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	40023500	42871297	5-UTR of ERG(-): 76Kb before coding start	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused to ERG exons 2-11): c.56-1181:TMPRSS2_c.-150+10082:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2847797	NA	0	20	39	20
P-0005797-T01-IM5	SOMATIC	PRKACA	DNAJB1	19	19	14220259	14628071	Intron of PRKACA(-): 2Kb before exon 2	Intron of DNAJB1(-): 213bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145)  - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused to PRKACA exons 2-10): c.212-213:DNAJB1_c.47-2038:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	407812	NA	0	20	38	20
P-0005818-T01-IM5	SOMATIC	IGF1R	IGF1R	15	15	99304900	99434721	Intron of IGF1R(+): 54Kb after exon 2	Exon 3 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875)  Rearrangement:  c.640+53564_808dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	129821	NA	0	10	17	10
P-0005818-T01-IM5	SOMATIC	EPHA3	EPHA3	3	3	89259123	89390930	Exon 3 of EPHA3(+)	Exon 5 of EPHA3(+)	GRCh37	DUPLICATION	EPHA3 (NM_005233) Rearrangement :  c.267_996dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	131807	NA	0	11	11	11
P-0005841-T01-IM5	SOMATIC	EWSR1	ERG	22	21	29684854	39766934	Intron of EWSR1(+): 79bp after exon 7	Intron of ERG(-): 3Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1  (NM_013986) - ERG (NM_182918) Fusion (EWSR1 exons 1 to 9 fused to ERG exons 7 to 10)  :  t(22;21)(chr22q12.2;chr21q22.2)(chr22:g.29684854::chr21:g.39766934)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (EWSR1-ERG)	0	NA	0	45	22	37
P-0005959-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72795737	72831409	IGR: 21Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : chr16:g.72795737_c.5172del	PRECISE		MANUAL_OK	3to5	-	35672	NA	0	11	25	11
P-0005985-T01-IM5	SOMATIC	PIK3CA	PIK3CA	3	3	178931769	178942517	Intron of PIK3CA(+): 3Kb after exon 9	Exon 16 of PIK3CA(+)	GRCh37	DELETION	PIK3CA (NM_006218) rearrangement: c.1539+3416_c.2324del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	10748	NA	0	21	33	19
P-0006072-T01-IM5	SOMATIC	MAP3K14	RSAD1	17	17	43342105	48567110	Exon 16 of MAP3K14(-)	IGR: 4Kb after RSAD1(+)	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement : c.2741:MAP3K14_chr17:g.48567110inv	PRECISE		MANUAL_OK	3to3	-	5225005	NA	0	17	31	17
P-0006092-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684378	32415266	Intron of EWSR1(+): 217bp before exon 7	Intron of WT1(-): 965bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-8 with WT1 exons 8-10) : t(22;11)(q12.2;p13)(chr22:g.29684378::chr11g.32415266)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	16	20	16
P-0006108-T03-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42849497	42866553	Intron of TMPRSS2(-): 950bp before exon 8	Intron of TMPRSS2(-): 48bp before exon 3	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) Rearrangement : c.127-48_795-950dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	17056	NA	0	12	12	12
P-0006114-T02-IM5	SOMATIC	BRAF	BRAF	7	7	140493428	140545175	Intron of BRAF(-): 680bp after exon 8	Intron of BRAF(-): 5Kb after exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.240+4736_c.1140+680del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	51747	NA	0	42	46	42
P-0006137-T01-IM5	SOMATIC	RARA	APPBP2	17	17	38508602	58580489	Exon 6 of RARA(+)	Intron of APPBP2(-): 3Kb before exon 2	GRCh37	DELETION	RARA (NM_000964) - APPBP2 (NM_0063) rearrangement: c.650:RARA_c.139-2641:APPBP2del	PRECISE		MANUAL_OK	3to5	Antisense fusion	20071887	NA	0	48	127	48
P-0006221-T02-IM5	SOMATIC	UNCX	MITF	7	3	1244112	70008546	IGR: 29Kb before UNCX(+)	Exon 9 of MITF(+)	GRCh37	TRANSLOCATION	MITF (NM_198159) rearrangement : t(3;7)(p13;p22.3)(chr3:g.70008546::chr7:g.1244112)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	23	10	18
P-0006245-T02-IM5	SOMATIC	BRCA2	BRCA2	13	13	32905669	32907146	Intron of BRCA2(+): 502bp after exon 9	Exon 10 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement :  c.793+502_1531dup	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1477	NA	0	6	2	6
P-0006247-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42855218	42872286	Intron of TMPRSS2(-): 3Kb before exon 6	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement : c.56-2170_557-2689inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	17068	NA	0	13	35	13
P-0006297-T01-IM5	SOMATIC	SMARCA4	LDLR	19	19	11169026	11222887	Exon 29 of SMARCA4(+)	Intron of LDLR(+): 572bp after exon 8	GRCh37	DELETION	SMARCA4 (NM_00307) - LDLR (NM_000527) rearrangement : c.4520:SMARCA4_c.1186+572:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (SMARCA4-LDLR)	53861	NA	0	44	53	33
P-0006378-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89653897	89738911	Intron of PTEN(+): 31bp after exon 2	IGR: 10Kb after PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) Rearrangement :  c.164+31_chr10:g.89738911del	PRECISE		MANUAL_OK	3to5	-	85014	NA	0	13	18	12
P-0006429-T01-IM5	SOMATIC	FGFR3	TNIP2	4	4	1808801	2757870	Intron of FGFR3(+): 42bp before exon 18	Exon 1 of TNIP2(-)	GRCh37	INVERSION	FGFR3 (NM_000142) -TNIP2 (NM_024309) rearrangement: c.2275-42:FGFR3_c.147:TNIP2inv	IMPRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (FGFR3-TNIP2)	949069	NA	0	19	0	19
P-0006442-T01-IM5	SOMATIC	PIK3C2G	CAPZA3	12	12	18716467	18912315	Intron of PIK3C2G(+): 35bp after exon 27	IGR: 21Kb before CAPZA3(+)	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement : c.3779+35:PIK3C2G_chr12:g.18912315del	PRECISE		MANUAL_OK	3to5	-	195848	NA	0	16	18	16
P-0006442-T01-IM5	SOMATIC	PAX8	PAX8	2	2	113980370	114015652	Intron of PAX8(-): 3Kb before exon 11	Intron of PAX8(-): 11Kb before exon 3	GRCh37	DUPLICATION	PAX8 (NM_003466) rearrangement : c.26-11156_1190-2615dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: out of frame	35282	NA	0	22	32	22
P-0006644-T01-IM5	SOMATIC	STAG2	STAG2	X	X	123164845	123219409	Exon 4 of STAG2(+)	Intron of STAG2(+): 988bp before exon 29	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement : c.158_3054-988dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	54564	NA	0	6	8	6
P-0006667-T01-IM5	SOMATIC	C15orf54	MGA	15	15	39563018	42046668	IGR: 20Kb before C15orf54(+)	Exon 17 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273)  Rearrangement : chr15:g.39563018_c.7042:MGAdel	PRECISE		MANUAL_OK	3to5	-	2483650	NA	0	75	67	70
P-0006667-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55192172	55222364	Intron of EGFR(+): 18Kb before exon 2	Intron of EGFR(+): 519bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-17807_c.889+519del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	30192	NA	0	48	42	42
P-0006670-T01-IM5	SOMATIC	DNMT3A	ASXL2	2	2	25484608	25966971	Intron of DNMT3A(-): 13Kb after exon 6	Exon 12 of ASXL2(-)	GRCh37	DELETION	ASXL2 (NM_018263) - DNMT3A (NM_022552) Rearrangement: c.2235:ASXL2_c.639+13202:DNMT3Adel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (ASXL2-DNMT3A)	482363	NA	0	53	44	52
P-0006768-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55172826	55223023	Intron of EGFR(+): 37Kb before exon 2	Intron of EGFR(+): 500bp before exon 8	GRCh37	INVERSION	EGFR (NM_00522) rearrangement : c.89-37153:EGFR_c.890-500inv	PRECISE		MANUAL_OK	5to5	-	50197	NA	0	23	25	17
P-0006809-T01-IM5	SOMATIC	MGA	MGA	15	15	42018273	42021516	Intron of MGA(+): 1Kb before exon 10	Exon 11 of MGA(+)	GRCh37	DUPLICATION	MGA (NM_001164273) Rearrangement :  c.3431-1105_3812dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	3243	NA	1	102	105	151
P-0006809-T01-IM5	SOMATIC	KDM6A	KDM6A	X	X	44896626	44913295	Intron of KDM6A(+): 274bp before exon 8	Intron of KDM6A(+): 95bp after exon 10	GRCh37	DUPLICATION	KDM6A (NM_021140) Rearrangement : c.620-274_875+95dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	16669	NA	0	23	34	19
P-0006812-T01-IM5	SOMATIC	ERCC5	ERCC5	13	13	103499839	103514708	Intron of ERCC5(+): 1Kb after exon 1	Exon 8 of ERCC5(+)	GRCh37	DUPLICATION	ERCC5 (NM_000123) Rearrangement :  c.88+1135_1209dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	14869	NA	0	10	10	8
P-0006839-T01-IM5	SOMATIC	RPS29	MLL3	14	7	50046598	151873899	Intron of RPS29(-): 2Kb before exon 3	Exon 38 of MLL3(-)	GRCh37	TRANSLOCATION	MLL3 (NM_170606) - RPS29 (NM_001030001) translocation : t(7;14)(q36.1;q21.3)(chr7:g.151873899::chr14:g.50046598)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	81	38	81
P-0006842-T01-IM5	SOMATIC	DNMT1	AP1M2	19	19	10270699	10700122	Exon 15 of DNMT1(-)	Promoter of AP1M2(-): 2Kb from tx start	GRCh37	DUPLICATION	DNMT1 (NM_001379) - AP1M2 (NM_005498) rearrangement :  c.1036:DNMT1_c.-2215:AP1M2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (DNMT1-AP1M2)	429423	NA	0	19	16	9
P-0006869-T01-IM5	SOMATIC	C10orf76	MDC1	10	6	103741063	30671699	Intron of C10orf76(-): 6Kb before exon 20	Exon 10 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) - C10orf76 (NM_024541) rearrangement: t(6;10)(p21.33;q24.32)(chr6:g.30671699::chr10:g.103741063)	IMPRECISE		MANUAL_OK	3to3	-	0	NA	0	24	0	24
P-0006869-T01-IM5	SOMATIC	MDC1	SPOCK1	6	5	30671642	136020145	Exon 10 of MDC1(-)	IGR: 291Kb before SPOCK1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(5;6)( q31.1;p21.33)(chr5:g.136020145::chr6:g.30671642)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	54	15
P-0006869-T01-IM5	SOMATIC	RBM24	MDC1	6	6	17200957	30671560	IGR: 81Kb before RBM24(+)	Exon 10 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.5400:MDC1_chr6:g.17200957inv	PRECISE		MANUAL_OK	5to5	-	13470603	NA	0	20	30	20
P-0006913-T01-IM5	SOMATIC	NCOA3	ZBP1	20	20	46264962	56191715	Exon 12 of NCOA3(+)	Intron of ZBP1(-): 191bp before exon 2	GRCh37	INVERSION	NCOA3 (NM_181659) - ZBP1 (NM_030776) rearrangement : c.1832:NCOA3_c.35-191inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NCOA3-ZBP1)	9926753	NA	0	26	59	26
P-0006913-T01-IM5	SOMATIC	GALNT11	MLL3	7	7	151756949	151854963	5-UTR of GALNT11(+): 34Kb before coding start	Intron of MLL3(-): 985bp after exon 44	GRCh37	DELETION	MLL3 (NM_170606) rearrangement : chr7:g.151756949_c.11670+985:MLL3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	98014	NA	0	10	16	10
P-0007000-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3823925	3825158	Exon 13 of CREBBP(-)	Intron of CREBBP(-): 464bp before exon 12	GRCh37	DELETION	CREBBP (NM_004380) rearrangement :  c.2159-464_2290del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1233	NA	0	34	56	34
P-0007043-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39866972	42869028	Intron of ERG(-): 3Kb after exon 1	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 2 fused with ERG exons 2 to 10) :  c.126+1018:TMPRSS2_c.18+3315:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002056	NA	0	46	29	45
P-0007108-T01-IM5	SOMATIC	ROS1	CD74	6	5	117646132	149783704	Intron of ROS1(-): 554bp before exon 34	Intron of CD74(-): 539bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944)  fusion (CD74 exons 1 to 6 fused with ROS1 exons 34 to 43)  :  t(5;6)(chr5q32;chr6q22.1)(chr5:g.149783704::chr6:g.117646132)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	85	41	81
P-0007114-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3780033	3823200	Intron of CREBBP(-): 158bp before exon 31	Intron of CREBBP(-): 552bp after exon 13	GRCh37	DELETION	CREBBP (NM_004380) rearrangement :  c.2463+552_5173-158del	PRECISE		MANUAL_OK	3to5	Deletion of 17 exons: in frame	43167	NA	0	11	13	9
P-0007281-T01-IM5	SOMATIC	IRS2	IRS2	13	13	110398923	110408579	IGR: 7Kb before IRS2(-)	3-UTR of IRS2(-): 72bp after coding stop	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.*72_chr13.g.110398923del	PRECISE		MANUAL_OK	3to5	-	9656	NA	0	32	23	30
P-0007413-T01-IM5	SOMATIC	ROS1	ROS1	6	6	117663630	117671144	Exon 28 of ROS1(-)	Intron of ROS1(-): 3Kb after exon 26	GRCh37	INVERSION	ROS1(NM_002944.2) rearrangement : c.4602_c.4321+3009inv	PRECISE		MANUAL_OK	3to3	-	7514	NA	0	54	45	51
P-0007527-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57488111	57493384	Intron of NAB2(+): 284bp before exon 7	Intron of STAT6(-): 161bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) reciprocal fusion (NAB2 exons 1-6 with STAT6 exons 16-22) : c.1469-284:NAB2_c.1745-161:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5273	NA	0	27	37	26
P-0007587-T01-IM5	SOMATIC	CDK12	RARA	17	17	37646889	38492466	Exon 3 of CDK12(+)	Intron of RARA(+): 5Kb after exon 2	GRCh37	INVERSION	CDK12 (NM_016507) RARA (NM_000964) rearrangement: c.2011:CDK12_c.178+4818:RARAinv	PRECISE		MANUAL_OK	3to3	Antisense fusion	845577	NA	0	6	10	6
P-0007638-T01-IM5	SOMATIC	LOC284661	MTOR	1	1	4431259	11205042	IGR: 41Kb before LOC284661(+)	Exon 33 of MTOR(-)	GRCh37	INVERSION	MTOR (NM_004958) Rearrangement : chr1:g.4431259_c.4747:MTORinv	PRECISE		MANUAL_OK	5to5	-	6773783	NA	0	24	43	24
P-0007759-T01-IM5	SOMATIC	JAK2	JAK2	9	9	5053476	5054581	Intron of JAK2(+): 1Kb before exon 7	Exon 7 of JAK2(+)	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.615-1087_c.633del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1105	NA	0	10	0	10
P-0007870-T02-IM6	SOMATIC	ZNF157	ROS1	X	6	47262831	117659405	Intron of ZNF157(+):7Kb before exon 2	Intron of ROS1(-):902bp before exon 31	GRCh37	TRANSLOCATION	ROS1 (NM_002944) Rearrangement :  t(X;6)(p11.23;q22.1)(chrX:g.47262831;chr6:g.117659405)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	16	10	16
P-0007911-T02-IM5	SOMATIC	NTRK3	ETV6	15	12	88592430	12007142	Intron of NTRK3(-): 16Kb before exon 13	Intron of ETV6(+): 647bp after exon 4	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1 to 4 fused with NTRK3 exons 13-20): t(12;15)(p13.2;q25.3)(chr12:g.12007142::chr15:g.88592430)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	11	12	11
P-0007917-T01-IM5	SOMATIC	CST7	FAM175A	20	4	24802754	84397854	IGR: 127Kb before CST7(+)	Intron of FAM175A(-): 22bp before exon 3	GRCh37	TRANSLOCATION	FAM175A (NM_139076) rearrangement : t(4;20)(q21.23;p11.21)(chr4:g.84397854::chr20:g.24802754)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	52	0	49
P-0007927-T01-IM5	SOMATIC	ETV6	ABCC9	12	12	12015620	21991843	Intron of ETV6(+): 7Kb before exon 5	Intron of ABCC9(-): 739bp before exon 28	GRCh37	INVERSION	ETV6 (NM_001987) - ABCC9 (NM_020297) rearrangement: c.464-6738:ETV6_c.3473-739:ABCC9inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (ETV6-ABCC9)	9976223	NA	0	23	36	22
P-0007927-T01-IM5	SOMATIC	ETV6	FGFR1OP2	12	12	12029024	27102057	Intron of ETV6(+): 6Kb after exon 5	5-UTR of FGFR1OP2(+): 5Kb before coding start	GRCh37	DUPLICATION	FGFR1OP2 (NM_015633) - ETV6 (NM_001987) rearrangement: c.1009+6121:ETV6_c.-14-5021:FGFR1OP2dup	PRECISE		MANUAL_OK	5to3	Transcript fusion (FGFR1OP2-ETV6)	15073033	NA	1	23	39	22
P-0007977-T01-IM5	SOMATIC	CDKN2A	CDKN2BAS	9	9	21971086	22065752	Exon 2 of CDKN2A(-)	5-UTR of CDKN2BAS(+): 55Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement : c.438:CDKN2Ap14ARF_chr9:g.22065752del    CDKN2Ap16INK4A (NM_000077) rearrangement : c.272:CDKN2Ap16INK4A_chr9:g.22065752del	PRECISE		MANUAL_OK	3to5	-	94666	NA	0	27	34	19
P-0008077-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39883192	42868270	Intron of ERG(-): 64Kb after exon 3	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4 to 11): c.127-1765:TMPRSS2_c.39+64394:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2985078	NA	0	8	23	8
P-0008139-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39850842	42867120	Intron of ERG(-): 19Kb after exon 1	Intron of TMPRSS2(-): 615bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1to 2 fused with ERG exons 3 to 11): c.127-615:TMPRSS2_c.40-33298:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3016278	NA	0	51	42	51
P-0008161-T01-IM5	SOMATIC	NF1	NF1	17	17	29508637	29518813	Intron of NF1(+): 91bp before exon 7	Intron of NF1(+): 9Kb before exon 9	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.655-91_c.889-8627dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	10176	NA	0	56	43	50
P-0008168-T01-IM5	SOMATIC	GPS2	TNFSF12	17	17	7216866	7439993	Intron of GPS2(-): 21bp after exon 7	IGR: 12Kb before TNFSF12(+)	GRCh37	DUPLICATION	GPS2 (NM_004489) rearrangement: c.634+21_chr17:g.439993dup	PRECISE		MANUAL_OK	5to3	-	223127	NA	0	35	39	25
P-0008171-T01-IM5	SOMATIC	STAG2	SLC25A14	X	X	123224802	129436158	Exon 32 of STAG2(+)	IGR: 38Kb before SLC25A14(+)	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.3566:STAG2_chrX:g.129436158del.	PRECISE		MANUAL_OK	3to5	-	6211356	NA	0	14	17	14
P-0008229-T01-IM5	SOMATIC	DCUN1D1	DCUN1D1	3	3	182650622	182665289	IGR: 10Kb before DCUN1D1(-)	Intron of DCUN1D1(-): 49bp after exon 5	GRCh37	INVERSION	DCUN1D1 (NM_020640) rearrangement : :c.603+49:DCUN1D1_chr3:g.182650622inv	PRECISE		MANUAL_OK	5to5	-	14667	NA	0	8	13	8
P-0008289-T01-IM5	SOMATIC	KIF5B	RET	10	10	32312788	43611748	Intron of KIF5B(-): 824bp before exon 16	Intron of RET(+): 284bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20) : c.1726-824:KIF5B_c.2137-284:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11298960	NA	0	15	37	15
P-0008320-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29683853	128651930	Intron of EWSR1(+): 730bp after exon 6	Intron of FLI1(+): 12bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8  fused to FLI1 exons 6-9)  :  t(11;22)(q24.3;q12.2)(chr11:g.128651930::chr22:g.29683853 )	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	8	6	8
P-0008376-T01-IM5	SOMATIC	ABL1	ABL1	9	9	133659226	133759858	Intron of ABL1(+): 69Kb after exon 1	Exon 11 of ABL1(+)	GRCh37	DELETION	ABL1 (NM_005157) rearrangement : chr9:g.133659226_c.2181:ABL1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	100632	NA	0	10	19	8
P-0008376-T01-IM5	SOMATIC	KDM5C	GPA33	X	1	53240981	167048139	Exon 9 of KDM5C(-)	Intron of GPA33(-): 5Kb before exon 2	GRCh37	TRANSLOCATION	GPA33 (NM_005814) - KDM5C (NM_004187) rearrangement : t(X;1)(p11.22;q24.1)(chrX:g.53240981::chr1:g.167048139)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (GPA33-KDM5C)	0	NA	0	10	8	10
P-0008420-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55141030	55223139	Intron of EGFR(+): 54Kb after exon 1	Intron of EGFR(+): 384bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+53972_890-384del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	82109	NA	0	102	541	1430
P-0008434-T01-IM5	SOMATIC	ETV6	LMO3	12	12	12016639	17005932	Intron of ETV6(+): 6Kb before exon 5	IGR: 305Kb before LMO3(-)	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement : c.464-5719:ETV6_chr12:17005932dup	PRECISE		MANUAL_OK	5to3	-	4989293	NA	0	40	48	38
P-0008434-T01-IM5	SOMATIC	ATRX	ATRX	X	X	76919019	76928348	Exon 12 of ATRX(-)	Intron of ATRX(-): 3Kb after exon 10	GRCh37	DELETION	ATRX (NM_000489) rearrangement : c.3809+3373_3972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	9329	NA	0	43	41	42
P-0008483-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	53238278	53245123	Intron of KDM5C(-): 1Kb after exon 12	Exon 7 of KDM5C(-)	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.817_c.1746+1318inv	PRECISE		MANUAL_OK	3to3	-	6845	NA	0	14	14	13
P-0008538-T01-IM5	SOMATIC	RB1	RB1	13	13	48919160	48931033	Intron of RB1(+): 56bp before exon 4	Intron of RB1(+): 3Kb before exon 7	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement : c.381-56_608-3120dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	11873	NA	0	17	14	16
P-0008645-T01-IM5	SOMATIC	FOXA1	FOXA1	14	14	38049617	38061020	IGR: 10Kb before FOXA1(-)	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.969G_chr14:g.38049617 del.	PRECISE		MANUAL_OK	3to5	-	11403	NA	0	17	33	17
P-0008669-T01-IM5	SOMATIC	TMPRSS2	ETV1	21	7	42872919	13999067	Intron of TMPRSS2(-): 3Kb before exon 2	Intron of ETV1(-): 18Kb after exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) in frame fusion (TMPRSS2 exon 1 fused with ETV1 exons 7-12): t(7;21)(p21.2;q22.3)(chr7:g.13999067::chr21:g.42872919)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (TMPRSS2-ETV1)	0	NA	0	7	0	7
P-0008682-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89711716	89720725	Intron of PTEN(+):158bp before exon 6	Exon 8 of PTEN(+)	GRCh37	INVERSION	PTEN (NM_000314) Rearrangement : c.493-159_c.876inv	PRECISE		MANUAL_OK	5to5	-	9009	NA	0	31	10	84
P-0008695-T01-IM5	SOMATIC	TP53	EIF5	17	14	7577159	103799131	Intron of TP53(-): 4bp before exon 8	Promoter of EIF5(+): 1Kb from tx start	GRCh37	TRANSLOCATION	EIF5 (NM_001969 ) - TP53 (NM_000546) rearrangement: t(14;17)(q32.32;p13.1)(chr14:g.103799131::chr17:g.7577159 )	PRECISE		MANUAL_OK	3to3	Transcript fusion (EIF5-TP53)	0	NA	0	47	46	46
P-0008695-T01-IM5	SOMATIC	MITF	FAM86DP	3	3	69998104	75341860	Intron of MITF(+): 98bp before exon 6	IGR: 129Kb before FAM86DP(-)	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.763-98_chr3:g.75341860inv.	PRECISE		MANUAL_OK	5to5	-	5343756	NA	0	19	19	13
P-0008840-T01-IM5	SOMATIC	SALL1	ANKRD11	16	16	50994355	89351036	IGR: 176Kb before SALL1(-)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.1914_chr16:g.50994355del	PRECISE		MANUAL_OK	3to5	-	38356681	NA	0	11	26	11
P-0008843-T01-IM5	SOMATIC	ALK	RANBP2	2	2	29446488	109377487	Intron of ALK(-): 94bp before exon 20	Intron of RANBP2(+): 1Kb before exon 19	GRCh37	INVERSION	RANBP2 (NM_006267) - ALK (NM_004304) rearrangement: c.2603-1070:RANBP2_c.3173-94:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (RANBP2-ALK)	79930999	NA	0	4	16	4
P-0008908-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41264228	41266531	5-UTR of CTNNB1(+): 1Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904)  rearrangement: c.-48-1284_c.328del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2303	NA	0	17	21	16
P-0008908-T01-IM5	SOMATIC	NBN	TRPS1	8	8	90959922	116744050	Intron of NBN(-): 130bp after exon 12	IGR: 63Kb after TRPS1(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.1914+130_chr8:g.116744050inv	PRECISE		MANUAL_OK	5to5	-	25784128	NA	0	17	23	16
P-0008948-T01-IM5	SOMATIC	NOTCH3	FAM20A	19	17	15298008	66644028	Exon 11 of NOTCH3(-)	IGR: 47Kb after FAM20A(-)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) Rearrangement : t(17;19)(17q24.2;19p13.12)(chr17:g.66644028::chr19:g.15298008)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	37	0	31
P-0008948-T01-IM5	SOMATIC	APC	MCC	5	5	112179408	112387142	Exon 16 of APC(+)	Intron of MCC(-): 2Kb before exon 14	GRCh37	INVERSION	APC (NM_000038) - MCC (NM_001085377) Rearrangement :  c.8117:APC_c.2449-2146:MCC inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (APC-MCC)	207734	NA	0	27	46	26
P-0009002-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	40023335	42870306	5-UTR of ERG(-): 76Kb before coding start	Intron of TMPRSS2(-): 190bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons1-11) : c.56-190:TMPRSS2_c.-150+10247:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2846971	NA	0	38	36	36
P-0009065-T02-IM5	SOMATIC	RHPN1	RECQL4	8	8	144456897	145739813	Intron of RHPN1(+): 826bp before exon 2	Intron of RECQL4(-): 13bp after exon 10	GRCh37	INVERSION	RECQL4 (NM_004260) - RHPN1 (NM_052924) rearrangement: c.1704+13:RECQL4_c.61-826:RHPN1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (RECQL4-RHPN1)	1282916	NA	0	7	17	6
P-0009103-T02-IM6	SOMATIC	NF1	NF1	17	17	29576699	29676172	Intron of NF1(+):562bp after exon 30	Exon 49 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4110+562_c.7224del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	99473	NA	0	35	10	39
P-0009109-T01-IM5	SOMATIC	IRF1	RAD50	5	5	131815508	131939130	IGR: 2Kb before IRF1(-)	Exon 14 of RAD50(+)	GRCh37	DUPLICATION	RAD50 (NM_005732) rearrangement: chr5:g.131815508_c.2346:RAD50dup	PRECISE		MANUAL_OK	5to3	-	123622	NA	0	12	26	12
P-0009223-T01-IM5	SOMATIC	ERBB4	ERBB4	2	2	212578266	212622479	Exon 8 of ERBB4(-)	Intron of ERBB4(-): 7Kb before exon 5	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.557-7050_c.991del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	44213	NA	0	7	14	7
P-0009307-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55240896	55269403	Intron of EGFR(+): 79bp after exon 17	Intron of EGFR(+): 25bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+79_c.3115-25dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons: in frame	28507	NA	0	6	13	6
P-0009347-T01-IM5	SOMATIC	CDKN2B	CDKN2BAS	9	9	22006062	22015263	Exon 2 of CDKN2B(-)	5-UTR of CDKN2BAS(+): 106Kb before coding start	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement : c.341_chr9:g.22015263inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (CDKN2B-CDKN2BAS)	9201	NA	0	24	63	13
P-0009364-T01-IM5	SOMATIC	DEPDC6	COL14A1	8	8	120994493	121195626	Intron of DEPDC6(+): 17Kb after exon 4	Intron of COL14A1(+): 13Kb before exon 6	GRCh37	DELETION	DEPTOR (NM_022783) - COL14A1(NM_021110) rearrangement: c.604+16843:DEPTOR_c.437-13404:COL14A1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DEPDC6-COL14A1)	201133	NA	0	102	81	159
P-0009364-T01-IM5	SOMATIC	FOXP1	FOXP1	3	3	71026189	71030446	Exon 17 of FOXP1(-)	Intron of FOXP1(-): 3Kb before exon 15	GRCh37	INVERSION	FOXP1 (NM_001244814) rearrangement: c.1433_c.1147-3266inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	4257	NA	0	7	18	7
P-0009374-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870205	42867657	Intron of ERG(-): 82bp after exon 1	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons1-2 with ERG exon2-10) : c.127-1152:TMPRSS2_c.18+82:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2997452	NA	0	56	60	55
P-0009431-T01-IM5	SOMATIC	GATA3	LOC100128811	10	10	8097810	25463753	Exon 2 of GATA3(+)	3-UTR of LOC100128811(-): 1Kb after coding stop	GRCh37	INVERSION	GATA3 (NM_002051) rearrangement : c.192:GATA3_chr10:g.25463753inv	PRECISE		MANUAL_OK	3to3	-	17365943	NA	0	43	48	43
P-0009448-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39874513	42870786	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 670bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exons 4-11)  : c.56-670:TMPRSS2_c.40-56969:ERGdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2996273	NA	0	7	0	7
P-0009451-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55202010	55222439	Intron of EGFR(+): 8Kb before exon 2	Intron of EGFR(+): 594bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :c.89-7969_889+594del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	20429	NA	0	102	417	802
P-0009512-T01-IM5	SOMATIC	BICC1	FGFR2	10	10	60452654	123240449	Intron of BICC1(+): 9Kb before exon 3	Intron of FGFR2(-): 914bp before exon 18	GRCh37	INVERSION	Note: The FGFR2 (NM_000141) - BICC1 (NM_001080512) reciprocal rearrangement event is an inversion which results in the fusion of FGFR2 exons 1-17  with  BICC1 exons 3-21 . The fusion is predicted to be in frame and includes the kinase domain of FGFR2.	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62787795	NA	0	23	81	4
P-0009542-T01-IM5	SOMATIC	SH2B3	TMEM116	12	12	111856489	112379170	Exon 2 of SH2B3(+)	Intron of TMEM116(-): 2Kb after exon 7	GRCh37	INVERSION	TMEM116 (NM_001193531) -SH2B3 (NM_005475) Rearrangement : c.315+1899:TMEM116_ c.540:SH2B3_inv	IMPRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (TMEM116-SH2B3)	522681	NA	0	6	0	6
P-0009626-T01-IM5	SOMATIC	RB1	RB1	13	13	48947544	48978589	Exon 12 of RB1(+)	Intron of RB1(+): 23Kb after exon 17	GRCh37	INVERSION	RB1 (NM_000321) Rearrangement : c.1131_1695+23010inv	PRECISE		MANUAL_OK	5to5	-	31045	NA	0	10	23	10
P-0009699-T01-IM5	SOMATIC	PLCG2	NUDT12	16	5	81934177	103163734	Intron of PLCG2(+): 40bp before exon 14	IGR: 279Kb before NUDT12(-)	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) Rearrangement : t(5;16)(q21.1;q23.3)(chr5:g.103163734::chr16:g. 81934177)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	22	0	21
P-0009714-T01-IM5	SOMATIC	KEAP1	KEAP1	19	19	10599959	10601595	Exon 5 of KEAP1(-)	Intron of KEAP1(-): 658bp after exon 3	GRCh37	DELETION	KEAP1 (NM_203500) Rearrangement: c.1325+658_c.1617del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1636	NA	0	90	115	90
P-0009740-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157222659	157223463	Exon 4 of ARID1B(+)	Intron of ARID1B(+): 804bp after exon 4	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.1926_c.1926+804del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	804	NA	0	64	73	63
P-0009757-T01-IM5	SOMATIC	BRAF	AGAP3	7	7	140493871	150823513	Intron of BRAF(-): 237bp after exon 8	Intron of AGAP3(+): 2Kb before exon 10	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) rearrangement: c.1222-2154:AGAP3_c.1140+237:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGAP3-BRAF)	10329642	NA	0	40	30	37
P-0009786-T01-IM5	SOMATIC	TP53	KCNJ3	17	2	7576603	155642294	Intron of TP53(-): 19bp before exon 6	Intron of KCNJ3(+): 69Kb before exon 3	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement :  t(2;17)(q24.1;p13.1)(chr2:g.155642294::chr17:g. 7576603 )	PRECISE		MANUAL_OK	3to5	-	0	NA	0	56	39	52
P-0009786-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39878096	42869553	Intron of ERG(-): 61Kb before exon 4	Intron of TMPRSS2(-): 493bp after exon 2	GRCh37	DELETION	TMPRSS2(NM_001135099)  -ERG (NM_004449)Fusion (TMPRS22 exon1 fused with ERG exons  4-10) :  c.126+493:TMPRSS2_c.40-60552:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2991457	NA	0	56	57	56
P-0009787-T02-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876148	42875609	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion:  c.55+4268:TMPRSS2_c.40-58604:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2999461	NA	0	17	24	17
P-0009867-T01-IM5	SOMATIC	GPS2	NEURL4	17	17	7217892	7219142	Exon 3 of GPS2(-)	3-UTR of NEURL4(-): 300bp after coding stop	GRCh37	INVERSION	GPS2 (NM_004489) rearrangement : c.-560_119inv	IMPRECISE		MANUAL_OK	3to3	-	1250	NA	0	27	0	24
P-0010071-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39835555	42869039	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 to 2 fused to ERG exons 3 to 10) : c.126+1007:TMPRSS2_c.19-18011:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3033484	NA	0	17	27	16
P-0010071-T01-IM5	SOMATIC	MIR548H3	TSC1	9	9	78358260	135781001	IGR: 20Kb after MIR548H3(-)	Exon 15 of TSC1(-)	GRCh37	INVERSION	TSC1 (NM_000368) Rearrangement :  chr9:g.78358260_c.1964:TSC1inv	PRECISE		MANUAL_OK	3to3	-	57422741	NA	0	15	55	15
P-0010126-T01-IM5	SOMATIC	CCRN4L	FAT1	4	4	139877853	187539170	IGR: 59Kb before CCRN4L(+)	Exon 10 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement : c.8570:FAT1_chr4:g.139877853del	PRECISE		MANUAL_OK	3to5	-	47661317	NA	0	41	26	30
P-0010243-T01-IM5	SOMATIC	TP53	TP53	17	17	7572510	7579231	3-UTR of TP53(-): 417bp after coding stop	Intron of TP53(-): 81bp after exon 4	GRCh37	DELETION	TP53 (NM_000546) Rearrangement :  c.375+81_c.*417del	PRECISE		MANUAL_OK	3to5	-	6721	NA	0	14	19	12
P-0010334-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098889	178102017	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-): 3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement : c.46-3018_156del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3128	NA	0	41	60	41
P-0010344-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55120215	55222596	Intron of EGFR(+): 33Kb after exon 1	Intron of EGFR(+): 751bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.88+33157_889+751del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	102381	NA	0	101	258	413
P-0010361-T02-IM5	SOMATIC	BTK	TSC22D2	X	3	100605050	149988968	Intron of BTK(-): 106bp before exon 19	IGR: 138Kb before TSC22D2(+)	GRCh37	TRANSLOCATION	BTK (NM_000061) rearrangement: t(3;X)(q25.1;q22.1)(chr3:g.149988968::chrX:g.100605050)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	16	19
P-0010512-T01-IM5	SOMATIC	JAK1	ASB17	1	1	65309647	76414149	Intron of JAK1(-): 100bp after exon 17	IGR: 30Kb before ASB17(-)	GRCh37	INVERSION	JAK1 (NM_002227) rearrangement : c.2403+100:JAK1_chr1:g.76414149inv see note1	PRECISE		MANUAL_OK	5to5	-	11104502	NA	0	13	22	13
P-0010512-T01-IM5	SOMATIC	YTHDC1	JAK1	4	1	69246009	65326020	IGR: 30Kb after YTHDC1(-)	Intron of JAK1(-): 75bp before exon 9	GRCh37	TRANSLOCATION	JAK1 (NM_002227) rearrangement : t(1;4)(p31.3;q13.2)(chr1:g.65326020::chr4:g.69246009) see note2	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	12	0	12
P-0010562-T01-IM5	SOMATIC	NTRK3	ETV6	15	12	88581658	12028903	Intron of NTRK3(-): 5Kb before exon 13	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 14-20): t(12;15)(p13.2; q25.1)(chr12:g.12028903::chr15:g.88581658)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	16	11	15
P-0010562-T01-IM5	SOMATIC	NF1	THRB	17	3	29664960	24264380	Intron of NF1(+): 62bp after exon 43	Intron of THRB(-): 6Kb after exon 4	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - THRB (NM_000461) rearrangement: t(3;17)(p24.2; q11.2)(chr3:g.24264380::chr17:g.29664960 )	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (NF1-THRB)	0	NA	0	13	10	13
P-0010600-T01-IM5	SOMATIC	RAB35	RAB35	12	12	120552810	120554441	Intron of RAB35(-): 2Kb after exon 1	Exon 1 of RAB35(-)	GRCh37	DELETION	RAB35 (NM_006861) rearrangement: c.14_c.52+1593del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1631	NA	0	19	31	19
P-0010628-T03-IM6	SOMATIC	NTRK1	IRF2BP2	1	1	156844223	234744291	Intron of NTRK1(+):31bp after exon 9	Exon 1 of IRF2BP2(-)	GRCh37	INVERSION	IRF2BP2 (NM_001077397) - NTRK1 (NM_002529) rearrangement: c.950:IRF2BP2_c.1195+31:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IRF2BP2:NTRK1}	77900068	NA	0	56	10	68
P-0010704-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46245056	46246552	Exon 15 of ARID2(+)	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) Rearrangement :  c.3150_c.4646del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1496	NA	0	58	73	57
P-0010711-T01-IM5	SOMATIC	N4BP1	MAP3K1	16	5	48661649	56171040	IGR: 18Kb after N4BP1(-)	Exon 10 of MAP3K1(+)	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921)Rearrangement : t(5;16)(q11.2;q12.1)(chr5:g.56171040::chr16:g.48661649)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	24	0	24
P-0010740-T01-IM5	SOMATIC	MLL2	KCNC2	12	12	49428583	75523953	Intron of MLL2(-): 12bp after exon 35	Intron of KCNC2(-): 77Kb after exon 2	GRCh37	DELETION	KCNC2 (NM_139137) - MLL2 (NM_003482) rearrangement : c.687+77124:KCNC2_c.10355+12:MLL2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (KCNC2-MLL2)	26095370	NA	0	14	31	14
P-0010740-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3896463	3900569	Intron of CREBBP(-): 4Kb after exon 2	Exon 2 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement : c.527_798+3835del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4106	NA	0	34	39	33
P-0010811-T01-IM5	SOMATIC	ERBB2	C17orf37	17	17	37883146	37886757	Exon 25 of ERBB2(+)	5-UTR of C17orf37(-): 9bp before coding start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement : c.3049:ERBB2_chr17:g.37886757del	PRECISE		MANUAL_OK	3to5	Antisense fusion	3611	NA	0	7	14	7
P-0010945-T01-IM5	SOMATIC	BRAF	AGK	7	7	140497610	141268013	Intron of BRAF(-): 3Kb after exon 7	Intron of AGK(+): 13Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) rearrangement :  c.101+12646:AGK_c.980+2552:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (AGK-BRAF)	770403	NA	0	11	12	11
P-0010989-T01-IM5	SOMATIC	ROS1	EZR	6	6	117649729	159191581	Intron of ROS1(-): 763bp after exon 32	Intron of EZR(-): 215bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion (EZR exons 1-9 fused with ROS1 exons 33-43): c.1090+215:EZR_c.5366+763:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EZR-ROS1)	41541852	NA	0	37	57	36
P-0010992-T01-IM5	SOMATIC	PXMP2	ERBB4	12	2	133281221	212248615	Exon 5 of PXMP2(+)	Exon 27 of ERBB4(-)	GRCh37	TRANSLOCATION	PXMP2 (NM_018663) - ERBB4 (NM_005235) rearrangement: t(2;12)(q34;q24.33)(chr2:g.212248615::chr12:g.133281221)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	22	0	21
P-0010992-T01-IM5	SOMATIC	CRLF3	RARA	17	17	29152958	38510509	Promoter of CRLF3(-): 1Kb from tx start	Intron of RARA(+): 45bp before exon 7	GRCh37	DELETION	RARA (NM_000964) rearrangement: chr17:g.29152958_c.808-45del	PRECISE		MANUAL_OK	3to5	-	9357551	NA	0	22	27	22
P-0010992-T01-IM5	SOMATIC	NF1	NF1	17	17	29563040	29693376	Intron of NF1(+): 1bp after exon 29	Intron of NF1(+): 6Kb after exon 56	GRCh37	DELETION	NF1 (NM_000267) rearrangement: c.3974+1_c.8314+5655del	PRECISE		MANUAL_OK	3to5	Deletion of 27 exons: out of frame	130336	NA	0	41	48	37
P-0010995-T01-IM5	SOMATIC	RAD21	RAD21	8	8	117877701	117878869	Intron of RAD21(-): 1Kb after exon 2	Exon 2 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.100_c.144+1124inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	1168	NA	0	14	23	10
P-0011089-T01-IM5	SOMATIC	EWSR1	CREB3L2	22	7	29685793	137593147	Intron of EWSR1(+): 609bp before exon 9	Exon 5 of CREB3L2(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L2 (NM_194071) fusion (EWSR1 exons 1-9 with CREB3L2 exon 5-12): t(7;22)(q33;12.2)(chr7:g.137593147::chr22:g.29685793)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EWSR1-CREB3L2)	0	NA	0	14	14	14
P-0011183-T01-IM5	SOMATIC	SETD2	MAP4	3	3	47127805	47928372	Intron of SETD2(-): 1bp before exon 11	Intron of MAP4(-): 9Kb before exon 9	GRCh37	DELETION	MAP4 (NM_002375) - SETD2 (NM_014159) rearrangement: c.2000-9359:MAP4_c.5278-1:SETD2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (MAP4-SETD2)	800567	NA	0	8	12	8
P-0011201-T01-IM5	SOMATIC	RGS2	CDC73	1	1	192828282	193121528	IGR: 50Kb before RGS2(+)	Exon 10 of CDC73(+)	GRCh37	DELETION	CDC73 (NM_024529) rearrangement : c.926_chr1:192828282del	PRECISE		MANUAL_OK	3to5	-	293246	NA	0	11	12	11
P-0011247-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55222771	55230555	Intron of EGFR(+): 752bp before exon 8	Intron of EGFR(+): 871bp before exon 14	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.890-752_c.1632-871del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: out of frame	7784	NA	0	30	20	20
P-0011290-T01-IM5	SOMATIC	MLL2	C7orf60	12	7	49420106	112507139	Exon 48 of MLL2(-)	Intron of C7orf60(-): 28Kb after exon 3	GRCh37	TRANSLOCATION	MLL2 (NM_003482) - C7orf60 (NM_152556) rearrangement : t(7;12)(q31.1;q13.12)(chr7:g.112507139::chr12:g.49420106)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MLL2-C7orf60)	0	NA	0	50	0	42
P-0011335-T01-IM5	SOMATIC	VPS35	CDH1	16	16	46718598	68842330	Intron of VPS35(-): 1Kb before exon 2	Exon 4 of CDH1(+)	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement :  chr16:g.46718598_c.391:CDH1del	PRECISE		MANUAL_OK	3to5	-	22123732	NA	0	29	33	29
P-0012030-T01-IM5	SOMATIC	TMPRSS2	RBPMS2	21	15	42870183	65037007	Intron of TMPRSS2(-): 67bp before exon 2	Intron of RBPMS2(-): 4Kb before exon 7	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - RBPMS2 (NM_194272) rearrangement : t(15;21)(q22.31;q22.3)(chr15:g.65037007::chr21:g.42870183)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-RBPMS2)	0	NA	0	31	0	31
P-0012073-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46208604	46252614	Intron of ARID2(+): 3Kb before exon 5	Intron of ARID2(+): 2Kb before exon 16	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.419-2849_c.4774-1970dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons: out of frame	44010	NA	0	21	19	19
P-0012134-T01-IM5	SOMATIC	MYC	ADCY8	8	8	128753084	132081862	Exon 3 of MYC(+)	IGR: 29Kb after ADCY8(-)	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.1245_chr8:g.132081862del	PRECISE		MANUAL_OK	3to5	-	3328778	NA	0	53	55	48
P-0012271-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39933914	42872883	Intron of ERG(-): 14Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.56-2767:TMPRSS2_c.39+13672:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2938969	NA	0	34	49	32
P-0012288-T01-IM5	SOMATIC	GRK5	NSD1	10	5	121033310	176721806	Intron of GRK5(+): 53Kb before exon 2	Exon 24 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) - GRK5 (NM_005308) rearrangement: t(5;10)(q35.3; q26.1)(chr5:g.176721806::chr10:g.121033310)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	47	15	44
P-0012306-T01-IM5	SOMATIC	CDKN2Ap14ARF	CDKN2BAS	9	9	21971024	22056567	Exon 2 of CDKN2Ap14ARF(-)	5-UTR of CDKN2BAS(+): 65Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: chr9:g.22056567_c.377:CDKN2Ap14ARFdel	PRECISE		MANUAL_OK	3to5		85543	NA	NA	16	21	NA
P-0012306-T01-IM5	SOMATIC	CDKN2Ap16INK4A	CDKN2BAS	9	9	21971024	22056567	Exon 2 of CDKN2Ap16INK4A(-)	5-UTR of CDKN2BAS(+): 65Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: chr9:g.22056567_c.334:CDKN2Ap16INK4Adel	PRECISE		MANUAL_OK	3to5		85543	NA	NA	16	21	NA
P-0012316-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29688203	128674054	Intron of EWSR1(+): 45bp after exon 9	Intron of FLI1(+): 1Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1(NM_002017) fusion (EWSR1 exons 1-9  fused to FLI1 exons 6-9) : t(11;22)( q24.3; q12.2)( chr11:g.128674054::chr22:g.29688203)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	14	12	14
P-0012342-T01-IM5	SOMATIC	NEGR1	NEGR1	1	1	72076736	72148005	Exon 5 of NEGR1(-)	Intron of NEGR1(-): 16Kb after exon 4	GRCh37	DELETION	NEGR1 (NM_173808) Rearrangement : c.667+15686_761del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	71269	NA	0	15	51	15
P-0012375-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39875968	42870175	Intron of ERG(-): 58Kb before exon 4	Intron of TMPRSS2(-): 59bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11): c.56-59:TMPRSS2_c.40-58424:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2994207	NA	0	3	4	3
P-0012395-T01-IM5	SOMATIC	SND1	BRAF	7	7	127388628	140493527	Intron of SND1(+): 27Kb after exon 10	Intron of BRAF(-): 581bp after exon 8	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) rearrangement: c.1152+27174:SND1_c.1140+581:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SND1-BRAF)	13104899	NA	0	14	24	13
P-0012423-T01-IM5	SOMATIC	NOL4	FGFR2	18	10	31563418	123242054	Intron of NOL4(-): 25Kb before exon 7	Intron of FGFR2(-): 363bp before exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - NOL4 (NM_003787) Rearrangement  :t(10;18)(q26.13;q12.1)(chr10:g.123242054::chr18:g.31563418)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-NOL4)	0	NA	0	16	13	16
P-0012456-T01-IM5	SOMATIC	NF2	RASD2	22	22	30069129	35955753	Intron of NF2(+): 129bp before exon 12	IGR: 6Kb after RASD2(+)	GRCh37	INVERSION	NF2 (NM_000268) Rearrangement : c.1123-129_22:35955753inv	PRECISE		MANUAL_OK	5to5	-	5886624	NA	0	16	18	15
P-0012557-T01-IM5	SOMATIC	TP63	TP63	3	3	189612084	189615014	Exon 14 of TP63(+)	3-UTR of TP63(+): 3Kb after coding stop	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.1836_c.*2723del	PRECISE		MANUAL_OK	3to5	-	2930	NA	0	7	23	7
P-0012577-T01-IM5	SOMATIC	PIK3CD	PIK3CD	1	1	9780997	9782221	Intron of PIK3CD(+): 30bp after exon 13	Intron of PIK3CD(+): 10bp after exon 17	GRCh37	INVERSION	PIK3CD (NM_005026) rearrangement: c.1689+30_c.2234+10inv	IMPRECISE		MANUAL_OK	3to3	Antisense fusion	1224	NA	0	59	0	54
P-0012587-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098004	178105981	Exon 3 of NFE2L2(-)	Intron of NFE2L2(-): 7Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-6982_c.376del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7977	NA	0	17	21	17
P-0012597-T01-IM5	SOMATIC	TP53	TP53	17	17	7574725	7578289	Intron of TP53(-): 692bp before exon 10	Exon 6 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.560_c.994-692del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3564	NA	0	6	9	6
P-0012648-T01-IM5	SOMATIC	KIF5B	RET	10	10	32315493	43611697	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 335bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1863:KIF5B_c.2137-335:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11296204	NA	0	54	79	54
P-0012904-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55114033	55221755	Intron of EGFR(+): 27Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:  c.88+26975_799del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	107722	NA	0	102	869	1968
P-0012914-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39863191	42869111	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 935bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10): c.126+935:TMPRSS2_c.18+7096:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3005920	NA	0	91	76	85
P-0012914-T01-IM5	SOMATIC	FLJ42709	APC	5	5	92746031	112175823	3-UTR of FLJ42709(-): 160Kb after coding stop	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: chr5:g.92746031_c.4532del	PRECISE		MANUAL_OK	3to5	-	19429792	NA	0	22	18	22
P-0012930-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39864783	42870218	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 102bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-102:TMPRSS2_c.18+5504:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3005435	NA	0	99	71	95
P-0013077-T01-IM5	SOMATIC	AKT1	PLD4	14	14	105239935	105380826	Intron of AKT1(-): 18bp before exon 9	IGR: 10Kb before PLD4(+)	GRCh37	DELETION	AKT1 (NM_001014431) Rearrangement: c.703-18:AKT1_chr14:g.105380826del	PRECISE		MANUAL_OK	3to5	-	140891	NA	0	9	9	8
P-0013105-T01-IM5	SOMATIC	NCOR1	USP28	17	11	15968849	113706887	Exon 33 of NCOR1(-)	Intron of USP28(-): 2Kb before exon 6	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - USP8 (NM_020886) rearrangement: t(11;17)(q23.2;p12)(chr11:g.113706887::chr17:g.15968849)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NCOR1-USP28)	0	NA	0	102	0	98
P-0013151-T01-IM5	SOMATIC	CALR	PBX4	19	19	13051433	19681239	Exon 6 of CALR(+)	Intron of PBX4(-): 131bp before exon 4	GRCh37	DUPLICATION	CALR (NM_004343) Rearrangement : c.781:CALR_c.442-131:PBX4dup	PRECISE		MANUAL_OK	5to3	-	6629806	NA	0	34	82	34
P-0013175-T01-IM5	SOMATIC	SF3B1	KCNE4	2	2	198265003	224083627	Exon 19 of SF3B1(-)	IGR: 167Kb before KCNE4(+)	GRCh37	INVERSION	SF3B1 (NM_012433) rearrangement: c.2874_chr2:g.224083627inv	PRECISE		MANUAL_OK	3to3	-	25818624	NA	0	39	30	39
P-0013202-T01-IM5	SOMATIC	ALK	EML4	2	2	29447178	42494436	Intron of ALK(-): 784bp before exon 20	Intron of EML4(+): 3Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29): c.667+2565:EML4_c.3173-784:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13047258	NA	0	69	65	68
P-0013216-T02-IM5	SOMATIC	NAB2	STAT6	12	12	57487806	57493365	Intron of NAB2(+): 425bp after exon 6	Intron of STAT6(-): 142bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion: c.1468+425:NAB2_c.1745-142:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5559	NA	0	75	74	74
P-0013232-T01-IM5	SOMATIC	ANKRD11	SPG7	16	16	89350501	89576379	Exon 9 of ANKRD11(-)	Intron of SPG7(+): 519bp before exon 2	GRCh37	DELETION	ANKRD11 (NM_013275) - SPG7 (NM_003119) rearrangement: c.2449:ANKRD11_c.184-519:SPG7del	PRECISE		MANUAL_OK	3to5	-	225878	NA	0	25	40	25
P-0013275-T01-IM5	SOMATIC	ZFHX3	ZFHX3	16	16	72831250	73081079	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-): 87Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.-50+572_c.5331del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	249829	NA	0	10	18	10
P-0013275-T01-IM5	SOMATIC	TRAF7	EXD3	16	9	2226536	140222821	Intron of TRAF7(+): 25bp before exon 21	Intron of EXD3(-): 4Kb before exon 18	GRCh37	TRANSLOCATION	EXD3 (NM_017820) - TRAF7 (NM_032271) rearrangement: t(9;16)(q34.3;p13.3)(chr9:g.140222821::chr16:g.2226536)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (EXD3-TRAF7)	0	NA	0	82	41	45
P-0013282-T01-IM5	SOMATIC	EWSR1	ATF1	22	12	29694628	51207953	Intron of EWSR1(+): 95bp before exon 13	Exon 5 of ATF1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-14 with ATF1 exons 5-7): t(12;22)(q13.12;q12.2)(chr12:g.51207953)(chr22:g.29694628)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EWSR1-ATF1)	0	NA	0	12	8	12
P-0013401-T01-IM5	SOMATIC	JUN	JUN	1	1	59238243	59247831	IGR: 8Kb before JUN(-)	Exon 1 of JUN(-)	GRCh37	INVERSION	JUN (NM_002228) rearrangement: c.912:JUN_chr1:g.59238243inv	PRECISE		MANUAL_OK	5to5	-	9588	NA	0	78	73	72
P-0013401-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39839600	42875769	Intron of ERG(-): 22Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4108:TMPRSS2_c.19-22056:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3036169	NA	0	100	88	105
P-0013404-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41265660	41266646	Intron of CTNNB1(+): 88bp after exon 2	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.13+88_443del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	986	NA	0	35	0	34
P-0013598-T01-IM5	SOMATIC	PTPRD	PTPRD	9	9	8449642	8473034	Intron of PTPRD(-): 83bp after exon 34	Intron of PTPRD(-): 2Kb before exon 31	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.3414-1949_c.3988+83del	PRECISE		MANUAL_OK	5to5	Antisense fusion	23392	NA	0	12	9	11
P-0013695-T01-IM5	SOMATIC	MET	MET	7	7	116412453	116418909	Intron of MET(+): 410bp after exon 14	Exon 17 of MET(+)	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.3028+410_c.3420dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	6456	NA	0	68	88	68
P-0013756-T01-IM5	SOMATIC	INA	FGFR2	10	10	105043292	123242695	Intron of INA(+): 4Kb before exon 2	Intron of FGFR2(-): 517bp after exon 16	GRCh37	INVERSION	INA (NM_032727) - FGFR2 (NM_000141) Rearrangement : c.1066-3500:INA_c.2301+517:FGFR2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (INA-FGFR2)	18199403	NA	0	102	101	117
P-0013810-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39882407	42867882	Intron of ERG(-): 65Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused in-frame to ERG exons 4-11): c.127-1377:TMPRSS2_c.40-64863:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2985475	NA	0	67	58	64
P-0013837-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39986556	42875045	5-UTR of ERG(-): 39Kb before coding start	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 3-11): c.55+4832:TMPRSS2_c.-149-29687:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2888489	NA	0	42	34	42
P-0013844-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39871879	42867863	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-54335:ERG_c.127-1358:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ERG-TMPRSS2)	2995984	NA	0	28	38	24
P-0013844-T01-IM5	SOMATIC	ZNF70	FOXP1	22	3	24082281	71015312	IGR: 1Kb before ZNF70(-)	Intron of FOXP1(-): 105bp before exon 20	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) rearrangement: t(3;22)(p13;q11.23)(chr3:g.71015312::chr22:g.24082281)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	12	8	8
P-0013928-T01-IM5	SOMATIC	MAP3K7	EPHA7	6	6	92082925	94124488	IGR: 858Kb before MAP3K7(-)	Intron of EPHA7(-): 3bp before exon 2	GRCh37	INVERSION	EPHA7 (NM_004440) rearrangement: c.98-3:EPHA7_chr6:g.92082925inv	PRECISE		MANUAL_OK	3to3	-	2041563	NA	0	17	43	10
P-0013934-T01-IM5	SOMATIC	NOTCH1	NOTCH1	9	9	139388759	139402698	IGR: 138bp before NOTCH1(-)	Exon 20 of NOTCH1(-)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.*1764_c.3311NOTCH1inv	PRECISE		MANUAL_OK	5to5	-	13939	NA	0	13	61	14
P-0014031-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140488251	140505996	Intron of BRAF(-): 867bp before exon 9	Intron of BRAF(-): 2Kb after exon 5	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.711+1764_c.1141-867del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	17745	NA	0	31	31	30
P-0014071-T01-IM5	SOMATIC	PDGFRA	PDGFRA	4	4	55129880	55133788	Exon 4 of PDGFRA(+)	Exon 7 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.414_c.1001del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3908	NA	0	102	495	1293
P-0014162-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89690805	89696514	Exon 4 of PTEN(+)	Intron of PTEN(+): 4Kb after exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.212_c.492+3506PTENdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	5709	NA	0	5	14	5
P-0014314-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684463	128663756	Intron of EWSR1(+): 132bp before exon 7	Intron of FLI1(+): 12Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused to FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128663756::chr22:g.29684463)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	52	42	51
P-0014377-T01-IM6	SOMATIC	BRAF	NFIA	7	1	140486673	61836194	Intron of BRAF(-): 675bp after exon 9	Intron of NFIA(+): 11Kb after exon 6	GRCh37	TRANSLOCATION	NFIA (NM_001145512) - BRAF (NM_004333) rearrangement: t(1;7)(p31.3;q34)(chr1:g.61836194::chr7:g.140486673)	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NFIA-BRAF)	0	NA	0	4	0	3
P-0014377-T01-IM6	SOMATIC	BRAF	ARL4C	7	2	140486624	235585719	Intron of BRAF(-): 724bp after exon 9	IGR: 184Kb before ARL4C(-)	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: (t2;7)(q37.1;q34)(chr2:g.235585719::chr7:g.140486624)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	34	24	34
P-0014380-T01-IM6	SOMATIC	LRRK2	ERBB3	12	12	40668746	56488267	Exon 16 of LRRK2(+)	Exon 15 of ERBB3(+)	GRCh37	DELETION	LRRK2 (NM_198578) - ERBB3 (NM_001982) rearrangement: c.1892:LRRK2_c.1786:ERBB2del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LRRK2-ERBB3)	15819521	NA	0	46	58	46
P-0014393-T01-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48895008	79961242	Intron of TFE3(-): 527bp after exon 5	Intron of ASPSCR1(+): 6Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused in-frame with TFE3 exons 6-10): t(17;X)(q25.3;p11.23)(chr17:g.79961242::chrX:g.48895008)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ASPSCR1-TFE3)	0	NA	0	23	13	23
P-0014425-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821898	42872644	Intron of ERG(-): 4Kb before exon 4	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-2528:TMPRSS2_c.19-4354:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3050746	NA	0	61	60	61
P-0014438-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39896787	42875935	Intron of ERG(-): 51Kb after exon 3	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-10): c.55+3942:TMPRSS2_c.39+50799:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2979148	NA	0	83	92	81
P-0014474-T01-IM6	SOMATIC	EIF2C2	EIF2C2	8	8	141557697	141596650	Exon 13 of EIF2C2(-)	Intron of EIF2C2(-): 1Kb before exon 2	GRCh37	DELETION	AGO2(NM_012154) Rearrangement : c.23-1240_c.1618del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	38953	NA	0	61	59	60
P-0014491-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14218318	14627579	Intron of PRKACA(-): 97bp before exon 2	Exon 2 of DNAJB1(-)	GRCh37	DELETION	PRKACA (NM_002730)_ DNAJB1 (NM_006145) rearrangement: c.47-97: PRKACA_c.491:DNAJB1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (DNAJB1-PRKACA)	409261	NA	0	9	12	9
P-0014506-T01-IM6	SOMATIC	C1QL1	RPTOR	17	17	43042059	78867562	Intron of C1QL1(-): 3Kb after exon 1	Exon 20 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: chr17:g.43042059_c.2298:RPTORdel	PRECISE		MANUAL_OK	3to5	-	35825503	NA	0	20	28	20
P-0014506-T01-IM6	SOMATIC	ROS1	CD74	6	5	117650623	149782871	Intron of ROS1(-): 14bp before exon 32	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 32-43): t(5;6)(q32;q22.1)(chr5:g.149782871::chr6:g.117650623)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CD74-ROS1)	0	NA	0	81	44	79
P-0014682-T01-IM6	SOMATIC	EIF5A	TP53	17	17	7209489	7578167	Promoter of EIF5A(+): 829bp from tx start	Intron of TP53(-): 10bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) rearrangement: chr17:g.7209489_c.672+10:TP53del	IMPRECISE		MANUAL_OK	3to5	Antisense fusion	368678	NA	0	13	0	11
P-0014808-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315591	43611055	Intron of KIF5B(-): 2Kb after exon 15	Intron of RET(+): 871bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1765:KIF5B_c.2136+871:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11295464	NA	0	37	55	36
P-0014808-T01-IM6	SOMATIC	RET	ERCC6	10	10	43611216	50725257	Intron of RET(+): 816bp before exon 12	Intron of ERCC6(-): 7Kb after exon 5	GRCh37	INVERSION	RET (NM_020975) - ERCC6 (NM_000124) rearrangement: c.2137-816:RET_c.1397+6822:ERCC6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (RET-ERCC6)	7114041	NA	0	30	41	27
P-0014841-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39886460	42873166	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_004449) fusion (TMPRSS2 exon2 fused to ERG exon 4) : c.56-3050:TMPRSS2_c.39+61126:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2986706	NA	0	82	61	71
P-0014874-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114708681	114711166	Promoter of TCF7L2(+): 1Kb from tx start	Intron of TCF7L2(+): 76bp before exon 3	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.-1835_c.257-76del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2485	NA	0	9	12	9
P-0014894-T01-IM6	SOMATIC	MCHR1	EP300	22	22	41099971	41527558	IGR: 25Kb before MCHR1(+)	Exon 6 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: chr22:g.41099971_c.1449del	PRECISE		MANUAL_OK	3to5	-	427587	NA	0	46	44	46
P-0015012-T01-IM6	SOMATIC	TMPRSS2	GDF6	21	8	42877101	96904156	Intron of TMPRSS2(-): 3Kb after exon 1	IGR: 250Kb before GDF6(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099)  rearrangement: t(8;21)(q22.1;q22.3)(chr8:g.96904156::chr21:g.42877101)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	12	12	11
P-0015029-T01-IM6	SOMATIC	EIF1AX	SPTLC3	X	20	20156591	12665904	Intron of EIF1AX(-): 66bp after exon 2	IGR: 324Kb before SPTLC3(+)	GRCh37	TRANSLOCATION	EIF1AX (NM_001412) rearrangement: t(X;20)(p22.12;p12.1)(chrX:g.20156591::chr20:g.12665904)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	12	8
P-0015039-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157384247	157405941	Intron of ARID1B(+): 22Kb before exon 6	Exon 6 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2038-21549_c.2183del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	21694	NA	0	7	7	7
P-0015046-T01-IM6	SOMATIC	EEF1G	DUSP4	11	8	62339839	29207364	Intron of EEF1G(-): 217bp after exon 2	Exon 1 of DUSP4(-)	GRCh37	TRANSLOCATION	DUSP4 (NM_001394) rearrangement: t(8;11)(p12;q12.3)(chr8:g.29207364::chr11:g.62339839)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	9	5	9
P-0015072-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187522530	187554025	Exon 21 of FAT1(-)	Intron of FAT1(-): 813bp after exon 7	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.4323+813_c.11533del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	31495	NA	0	13	25	12
P-0020033-T02-IM6	SOMATIC	KMT2B	SEC1P	19	19	36211595	49186140	Exon 3 of KMT2B(+)	Promoter of SEC1P(+):45Kb from tx start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.1346:KMT2B_chr19:g.49186140inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	12974545	NA	0	23	10	26
P-0020033-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268516	55269654	Intron of EGFR(+):364bp before exon 25	Intron of EGFR(+):179bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-365_c.3162+179del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1138	NA	1	56	10	63
P-0020076-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36209278	36211935	Exon 1 of KMT2B(+)	Exon 3 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.358_c.1686inv	IMPPRECISE		MANUAL_OK	5to5	-	2657	NA	0	6	0	6
P-0020482-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117833120	117864336	IGR: 25Kb before RAD21(-)	Intron of RAD21(-):1bp before exon 11	GRCh37	DELETION	RAD21 (NM_006265) Rearrangement : c.1322-1:RAD21_chr8:g.117833120del	PRECISE		MANUAL_OK	3to5	-	31216	NA	0	7	10	8
P-0020523-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487505	57493335	Intron of NAB2(+):124bp after exon 6	Intron of STAT6(-):112bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused in frame with STAT6 exons 16-22): c.1468+124:NAB2_c.1745-112:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5830	NA	0	33	10	33
P-0020546-T01-IM6	SOMATIC	RHEB	RHEB	7	7	151216582	151218860	Exon 1 of RHEB(-)	Promoter of RHEB(-):56Kb from tx start	GRCh37	DELETION	RHEB (NM_005614) rearrangment: chr7:g.151218860_c.16:RHEBdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2278	NA	0	28	10	34
P-0020627-T01-IM6	SOMATIC	TAP1	SASH1	6	6	32815768	148725771	Exon 8 of TAP1(-)	Intron of SASH1(+):14Kb after exon 2	GRCh37	DUPLICATION	TAP1 (NM_000593) rearrangement: c.1848_g.148725771dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	115910003	NA	0	73	10	120
P-0020670-T01-IM6	SOMATIC	JAK1	BCL10	1	1	65408657	85733407	5-UTR of JAK1(-):108Kb before coding start	Exon 3 of BCL10(-)	GRCh37	INVERSION	BCL10 (NM_003921) rearrangement: g.65408657_c.605inv	IMPPRECISE		MANUAL_OK	3to3	-	20324750	NA	0	11	0	11
P-0020697-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591184	67591769	Intron of PIK3R1(+):32bp after exon 13	Intron of PIK3R1(+):229bp before exon 15	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1745+32_c.1815-230del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	585	NA	0	5	0	5
P-0020738-T01-IM6	SOMATIC	IKZF3	ETV6	17	12	38012519	12023694	Intron of IKZF3(-):8Kb after exon 1	Intron of ETV6(+):791bp after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - IKZF3(NM_012481) rearrangement: t(12;17)(p13.2;q12)(chr12:g.12023694::chr17:g.38012519)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:IKZF3}	0	NA	0	360	10	365
P-0020812-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884157	42876239	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) (TMPRSS2 exon 1 fused with ERG exons 4-11): c.55+3638:TMPRSS2_c.39+63429:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992082	NA	0	180	10	198
P-0020823-T02-IM6	SOMATIC	JAK1	MSH4	1	1	65313254	76264027	Exon 13 of JAK1(-)	Intron of MSH4(+):1Kb after exon 1	GRCh37	DELETION	JAK1 (NM_002227) - MSH4 (NM_002440) rearrangement: c.1860:JAK1_c.244+1113:MSH4del	PRECISE		MANUAL_OK	3to5	-	10950773	NA	0	4	10	4
P-0020865-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18435296	18442273	Exon 2 of PIK3C2G(+)	Intron of PIK3C2G(+):2Kb before exon 4	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.281_c.762-1516del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6977	NA	0	35	10	51
P-0020900-T02-IM6	SOMATIC	SMARCD1	LIMA1	12	12	50488267	50674903	Exon 10 of SMARCD1(+)	5-UTR of LIMA1(-):104Kb before coding start	GRCh37	INVERSION	SMARCD1 (NM_003076) - LIMA1(NM_001113546) rearrangement: c.1181:SMARCD1_c.-24+2300:LIMA1del	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMARCD1:LIMA1}	186636	NA	0	14	10	13
P-0020936-T01-IM6	SOMATIC	SNAR-F	NTRK2	19	9	51098316	87481482	IGR: 10Kb before SNAR-F(+)	Intron of NTRK2(+):675bp before exon 16	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) rearrangement: t(9;19)(q21.33;q13.33)(chr9:g.87481482::chr19:g.51098316)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	45	10	47
P-0020936-T01-IM6	SOMATIC	NIPBL-AS1	RICTOR	5	5	36791738	38968047	IGR: 80Kb before NIPBL-AS1(-)	Exon 12 of RICTOR(-)	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: chr5:g.36791738_c.1058del	PRECISE		MANUAL_OK	3to5	-	2176309	NA	0	7	10	6
P-0020962-T01-IM6	SOMATIC	MPRIP	FLCN	17	17	16994136	17122300	Intron of MPRIP(+):13Kb after exon 3	Intron of FLCN(-):32bp after exon 9	GRCh37	DELETION	FLCN (NM_144997) rearrangement: g.16994136_c.1062+33del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	128164	NA	0	9	10	9
P-0021063-T01-IM6	SOMATIC	SLX4	CREBBP	16	16	3634929	3787467	Intron of SLX4(-):57bp before exon 13	Intron of CREBBP(-):651bp before exon 27	GRCh37	DELETION	CREBBP (NM_004380) -  SLX4 (NM_032444) rearrangement: c.4395-651:CREBBP_c.4637-57:SLX4	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CREBBP:SLX4}	152538	NA	0	12	10	13
P-0021127-T01-IM6	SOMATIC	NF1	NF1	17	17	29554740	29556329	Intron of NF1(+):116bp after exon 20	Exon 21 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2409+116_c.2696del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1589	NA	2	55	10	66
P-0021127-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138575092	140491741	Intron of KIAA1549(-):4Kb after exon 10	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-10 fused with BRAF exons 9-18) : c.4032+3996:KIAA1549_c.1140+2367:BRAFdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1916649	NA	0	81	0	86
P-0021241-T01-IM6	SOMATIC	LYN	LOC101927915	8	8	56882460	137719703	Intron of LYN(+):108bp after exon 10	IGR: 699Kb before LOC101927915(-)	GRCh37	DELETION	LYN (NM_002350) rearrangement: c.1050+108_g.137719703del	PRECISE		MANUAL_OK	3to5	-	80837243	NA	0	3	10	3
P-0021342-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9780023	9780934	Exon 10 of PIK3CD(+)	Exon 13 of PIK3CD(+)	GRCh37	INVERSION	PIK3CD (NM_005026) rearrangement: c.1287_c.1656inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	911	NA	0	3	8	3
P-0021342-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39895890	42868257	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.127-1752:TMPRSS2_c.39+51696:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2972367	NA	0	58	10	60
P-0021375-T01-IM6	SOMATIC	STK11	STK11	19	19	1189248	1223044	IGR: 17Kb before STK11(+)	Exon 8 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: chr19:g.1189248_c.981del	PRECISE		MANUAL_OK	3to5	-	33796	NA	0	66	10	70
P-0021420-T01-IM6	SOMATIC	PTPRD	TYRP1	9	9	8521425	12129986	Exon 20 of PTPRD(-)	IGR: 563Kb before TYRP1(+)	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: chr9:g.12129986_c.813:PTPRDinv	PRECISE		MANUAL_OK	3to3	-	3608561	NA	0	75	10	75
P-0021454-T03-IM6	SOMATIC	JAK2	JAK2	9	9	4932510	5081770	IGR: 53Kb before JAK2(+)	Exon 19 of JAK2(+)	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: chr9:g.4932510_c.2480del	PRECISE		MANUAL_OK	3to5	-	149260	NA	0	28	10	31
P-0021476-T01-IM6	SOMATIC	NOTCH3	BRD4	19	19	15290467	15396709	Intron of NOTCH3(-):160bp before exon 21	IGR: 39Kb before BRD4(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.3328-160_g.15396709del	PRECISE		MANUAL_OK	3to5	-	106242	NA	0	5	10	4
P-0021501-T01-IM6	SOMATIC	NOTCH4	PRICKLE4	6	6	32190978	41754978	Intron of NOTCH4(-):115bp before exon 2	3-UTR of PRICKLE4(+):4Kb after coding stop	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.74-115:NOTCH4_chr6:g.41754978del	PRECISE		MANUAL_OK	3to5	-	9564000	NA	0	21	10	22
P-0021507-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11127627	11130233	Intron of SMARCA4(+):2Kb before exon 17	Intron of SMARCA4(+):33bp before exon 18	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2439-2006_c.2506-34del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2606	NA	0	125	10	139
P-0021511-T02-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14229680	14628294	Promoter of PRKACA(-):27Kb from tx start	Intron of DNAJB1(-):436bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fuses with PRKACA exons 1-10): c.212-436:DNAJB1_c.-1321:PRKACAdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DNAJB1:PRKACA}	398614	NA	0	33	10	33
P-0021527-T01-IM6	SOMATIC	COL15A1	TGFBR1	9	9	101730304	101891133	Intron of COL15A1(+):18Kb before exon 3	Intron of TGFBR1(+):3bp before exon 2	GRCh37	DELETION	COL15A1 (NM_001855) -TGFBR1 (NM_004612) rearrangement: c.101-17543:COL15A1_c.98-4C:TGFBR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {COL15A1:TGFBR1}	160829	NA	0	44	10	45
P-0021550-T01-IM6	SOMATIC	ARID1A	SIPA1L2	1	1	27099990	232497627	Intron of ARID1A(+):3bp after exon 15	IGR: 36Kb before SIPA1L2(-)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.3866+3_chr1:g.232497627inv	PRECISE		MANUAL_OK	3to3	-	205397637	NA	0	7	10	7
P-0021577-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831231	42869477	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):568bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.126+569:TMPRSS2_c.19-13687:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3038246	NA	0	136	10	151
P-0021593-T01-IM6	SOMATIC	GPS2	TIMELESS	17	12	7217737	56839397	Intron of GPS2(-):15bp before exon 4	5-UTR of TIMELESS(-):28Kb before coding start	GRCh37	TRANSLOCATION	GPS2 (NM_004489) rearrangement: t(12;17)(q13.3;p13.1)(chr12:g.56839397::chr17:g.7217737)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	21
P-0021593-T01-IM6	SOMATIC	GPS2	ZNF624	17	17	7217842	16492603	Exon 3 of GPS2(-)	IGR: 31Kb before ZNF624(-)	GRCh37	INVERSION	GPS2 (NM_004489) rearrangement: c.169_g.16492603inv	PRECISE		MANUAL_OK	5to5	-	9274761	NA	0	16	10	26
P-0021618-T01-IM6	SOMATIC	RUNX1	ALKBH7	21	19	36164635	6377157	Exon 9 of RUNX1(-)	Promoter of ALKBH7(+):5Kb from tx start	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(19;21)(p13.3;q22.12)(chr19:g.6377157::chr21:g.36164635)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ALKBH7:RUNX1}	0	NA	0	5	10	5
P-0021648-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43747699	43748430	Intron of TP53BP1(-):390bp after exon 12	Exon 12 of TP53BP1(-)	GRCh37	DELETION	TP53BP1 (NM_001141980) rearrangement: c.2376_c.2716+391del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	731	NA	0	44	10	50
P-0021658-T01-IM6	SOMATIC	CDKN1B	EMP1	12	12	12871158	13300314	Exon 1 of CDKN1B(+)	IGR: 49Kb before EMP1(+)	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.385_chr12:g.13300314del	PRECISE		MANUAL_OK	3to5	-	429156	NA	0	49	10	89
P-0021668-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14225506	14628281	Intron of PRKACA(-):3Kb after exon 1	Intron of DNAJB1(-):423bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused with PRKACA exons 1-10 which includes the kinase domain.) : c.212-423:DNAJB1_c.46+2808:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	402775	NA	0	62	10	70
P-0021674-T01-IM6	SOMATIC	MYO9B	PIK3R2	19	19	17288472	18266895	Intron of MYO9B(+):2Kb after exon 14	Exon 2 of PIK3R2(+)	GRCh37	DUPLICATION	PIK3R2 (NM_005027) - MYO9B (NM_004145) rearrangement: c.206:PIK3R2_c.2219+1922:MYO9Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3R2:MYO9B}	978423	NA	0	31	10	34
P-0021702-T01-IM6	SOMATIC	CASC6	EPHA7	6	6	92924560	94120809	IGR: 586Kb before CASC6(-)	Exon 3 of EPHA7(-)	GRCh37	DELETION	EPHA7 (NM_004440) rearrangement: g.92924560_c.242del	PRECISE		MANUAL_OK	3to5	-	1196249	NA	0	18	10	18
P-0021709-T01-IM6	SOMATIC	DOT1L	SGK223	19	8	2226441	8188507	Exon 27 of DOT1L(+)	Intron of SGK223(-):3Kb before exon 4	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(8,19)(p23.1,p13.3)(chr8:g.8188507::chr19:g.2226441)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	120	10	127
P-0021712-T01-IM6	SOMATIC	BRIP1	MAP2K6	17	17	59857712	67432146	Exon 13 of BRIP1(-)	Intron of MAP2K6(+):21Kb after exon 1	GRCh37	INVERSION	MAP2K6 (NM_002758) - BRIP1 (NM_032043) rearrangement: c.16+21005:MAP2K6_c.1845:BRIP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MAP2K6:BRIP1}	7574434	NA	0	31	10	31
P-0021712-T01-IM6	SOMATIC	LINC00511	TERT	17	5	70628448	1254529	3-UTR of LINC00511(-):8Kb after coding stop	Exon 15 of TERT(-)	GRCh37	TRANSLOCATION	TERT ( NM_198253) rearrangement: t(5,17)(p15.33,q24.3)(chr5:g.1254529::chr17:g.70628448)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	65	10	105
P-0021749-T01-IM6	SOMATIC	MIR3974	PIK3C2G	12	12	17903264	18535906	IGR: 77Kb before MIR3974(+)	Intron of PIK3C2G(+):1Kb after exon 13	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: chr12:g.17903264_c.1872+1092:PIK3C2Ginv	PRECISE		MANUAL_OK	5to5	-	632642	NA	0	10	10	10
P-0021755-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72758748	72863686	IGR: 58Kb before ZFHX3(-)	Exon 5 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: chr16:g.72758748_c.3521:ZFHX3del	PRECISE		MANUAL_OK	3to5	-	104938	NA	0	32	10	34
P-0021772-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162683698	163093225	Exon 3 of PARK2(-)	Intron of PARK2(-):55Kb after exon 1	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.7+55469_c.271del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	409527	NA	0	13	10	11
P-0021853-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876965	42873148	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exon4) : c.56-3032:TMPRSS2_c.40-59421:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996183	NA	0	51	10	53
P-0021879-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312846	43610699	Intron of KIF5B(-):882bp before exon 16	Intron of RET(+):515bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B1 exons 1-15 fused with RET exons 12-20 including the kinase domain.): c.1726-882:KIF5B_c.2136+515_RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297853	NA	0	8	10	11
P-0021910-T01-IM6	SOMATIC	GNAS	NLRP8	20	19	57429305	56476833	Exon 1 of GNAS(+)	Intron of NLRP8(+):745bp before exon 5	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(19,20)(q13.4,q13.32)(chr19:g.56476833::chr20:g.57429305)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	53	10	83
P-0021927-T01-IM6	SOMATIC	ETV6	LRRC4C	12	11	12017383	39957491	Intron of ETV6(+):5Kb before exon 5	IGR: 178Kb before LRRC4C(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(11;12)(p12;p13.2)(chr11:g.39957491:chr12:g.12017383)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	18
P-0021927-T01-IM6	SOMATIC	APC	APC	5	5	112155598	112162902	Intron of APC(+):557bp after exon 10	Exon 12 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1312+557_c.1506del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7304	NA	0	5	10	5
P-0021937-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316470	43611555	Intron of KIF5B(-):885bp after exon 15	Intron of RET(+):476bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused with RET exons 12-20) : c.1725+886:KIF5B_c.2137-477:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295085	NA	0	67	10	92
P-0021983-T01-IM6	SOMATIC	IGF1R	SIRT5	15	6	99467786	13582729	Exon 13 of IGF1R(+)	5-UTR of SIRT5(+):2Kb before coding start	GRCh37	TRANSLOCATION	IGF1R (NM_000875) rearrangement: t(6;15)(p23;q26.3)(chr6:g.13582729::chr15:g.99467786)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	17
P-0021983-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44740630	44929230	Intron of KDM6A(+):7Kb after exon 2	Exon 17 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.225+7397_c.2330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	188600	NA	0	36	10	37
P-0021993-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141569466	141618087	Intron of AGO2(-):27bp after exon 6	Intron of AGO2(-):23Kb before exon 2	GRCh37	DUPLICATION	AGO2 (NM_012154) rearrangement: c.768+28_c.23-22677dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	48621	NA	0	36	10	36
P-0022034-T01-IM6	SOMATIC	EEF1A2	PIK3R2	20	19	62118311	18271854	Promoter of EEF1A2(-):1Kb from tx start	Intron of PIK3R2(+):9bp before exon 5	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) Rearrangement: t(19,20)(p13.11,q13.33)(chr19:g.18271854::chr20:g.62118311)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	13
P-0022044-T01-IM6	SOMATIC	EWSR1	FEV	22	2	29684126	219848798	Intron of EWSR1(+):468bp before exon 9	Intron of FEV(-):154bp after exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FEV (NM_017521) fusion (EWSR1 exons 1-9 fused to FEV exon 3): t(2;22)(q35;q12.2)(chr2:g.219848798::chr22:g.29684126)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:FEV}	0	NA	0	56	10	55
P-0022060-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39817249	42861857	Intron of ERG(-):77bp after exon 2	Intron of TMPRSS2(-):337bp before exon 4	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.236+78:ERG_c.350-337:TMPRSS2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERG:TMPRSS2}	3044608	NA	0	12	0	18
P-0022067-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868149	42872882	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2776:TMPRSS2_c.18+2138:ERGdel	PRECISE		MANUAL_OK	3to3	-	3004733	NA	0	3	7	2
P-0022074-T01-IM6	SOMATIC	SLC30A4	ETV1	15	7	45805273	14028647	Intron of SLC30A4(-):2Kb before exon 3	Exon 2 of ETV1(-)	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) - SLC30A4 (NM_013309) rearrangement: t(7;15)(p21.2;q21.1)(chr7:g.14028647::chr15:g.45805273)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	30
P-0022074-T01-IM6	SOMATIC	NFE2L2	ZNF385B	2	2	178097937	180533374	Intron of NFE2L2(-):40bp after exon 3	Intron of ZNF385B(-):77Kb after exon 1	GRCh37	DUPLICATION	NFE2L2 (NM_006164) - ZNF385B (NM_152520) rearrangement: c.402+41:NFE2L2_c.253+100856:ZNF385Bdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NFE2L2:ZNF385B}	2435437	NA	0	129	0	152
P-0022074-T01-IM6	SOMATIC	NFE2L2	TTN	2	2	178097975	179608215	Intron of NFE2L2(-):2bp after exon 3	Intron of TTN(-):2Kb before exon 46	GRCh37	DELETION	TTN (NM_133378) - NFE2L2 (NM_006164) rearrangement: c.10361-5128:TTN_c.402+3:NFE2L2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TTN:NFE2L2}	1510240	NA	0	61	10	64
P-0022138-T01-IM6	SOMATIC	ALK	EML4	2	2	29446584	42553384	Intron of ALK(-):190bp before exon 20	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused with ALK exons 20-29): c.2333:EML4_c.3173-190:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13106800	NA	0	43	10	38
P-0022174-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59831214	59870958	Intron of BRIP1(-):9Kb before exon 15	Exon 10 of BRIP1(-)	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.1473_c.2098-9262del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	39744	NA	0	4	6	4
P-0022259-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57488455	57493351	Exon 7 of NAB2(+)	Intron of STAT6(-):128bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-7 fused with STAT6 exons 16-22): c.1529:NAB2_c.1745-128:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	4896	NA	0	93	10	92
P-0022310-T01-IM6	SOMATIC	GPR137	RPS6KA4	11	11	64053207	64137399	Intron of GPR137(+):774bp before exon 3	Intron of RPS6KA4(+):34bp after exon 14	GRCh37	DUPLICATION	RPS6KA4 (NM_003942) - GPR137 (NM_001170726) Rearrangement: c.1797+34:RPS6KA4_c.160-775:GPR137dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RPS6KA4:GPR137}	84192	NA	0	27	10	29
P-0022310-T01-IM6	SOMATIC	AXL	RNF2	19	1	41727868	185034625	Exon 4 of AXL(+)	5-UTR of RNF2(+):22Kb before coding start	GRCh37	TRANSLOCATION	AXL (NM_021913) - RNF2 (NM_007212) Rearrangement: t(1;19)(q25.3;q13.2)(chr1:g.185034625::chr19:g.41727868)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AXL:RNF2}	0	NA	0	6	10	6
P-0022323-T01-IM6	SOMATIC	EZH1	BRCA1	17	17	40887539	41209217	5-UTR of EZH1(-):33Kb before coding start	Intron of BRCA1(-):65bp before exon 19	GRCh37	DUPLICATION	EZH1 (NM_001991) - BRCA1 (NM_007294) Rearrangement : c.-102-4603:EZH1_c.5194-65:BRCA1dup	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {EZH1:BRCA1}	321678	NA	0	6	0	6
P-0022323-T01-IM6	SOMATIC	BAGE2	KMT2C	21	7	11039050	151945542	3-UTR of BAGE2(-):11Kb after coding stop	Exon 14 of KMT2C(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) Rearrangement : t(7;21)(q36.1;p11.1)(chr7:g.151945542::chr21:g.11039050)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	1	14	0	75
P-0022323-T01-IM6	SOMATIC	DGAT1	RECQL4	8	8	145541021	145741719	Exon 13 of DGAT1(-)	Exon 5 of RECQL4(-)	GRCh37	DUPLICATION	DGAT1 (NM_012079) - RECQL4 (NM_004260) Rearrangement : c.1069:DGAT1_c.784:RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DGAT1:RECQL4}	200698	NA	0	38	10	41
P-0022346-T01-IM6	SOMATIC	THSD4	ALK	15	2	71944254	29448144	Intron of THSD4(+):9Kb before exon 7	Intron of ALK(-):182bp after exon 19	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(2;15)(q23.1;q23)(chr2:g.29448144::chr15:g.71944254)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	28	10	29
P-0022424-T01-IM6	SOMATIC	SEPT12	ARID1A	16	1	4838352	27089562	5-UTR of SEPT12(-):11Kb before coding start	Exon 8 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) - SEPT12 (NM_144605) rearrangement: t(1;16)(p36.11;p13.3)(chr1:g.27089562::chr16:g.4838352)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1A:SEPT12}	0	NA	0	10	10	10
P-0022424-T01-IM6	SOMATIC	AZIN1	PDGFRA	8	4	103867353	55130160	5-UTR of AZIN1(-):27Kb before coding start	Intron of PDGFRA(+):66bp after exon 4	GRCh37	TRANSLOCATION	PDGFRA (NM_006206) rearrangement: t(4;8)(q12;q22.3)(chr4:g.55130160::chr8:g.103867353)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {PDGFRA:AZIN1}	0	NA	0	7	0	7
P-0022427-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241236	55269004	Intron of EGFR(+):377bp before exon 18	Exon 25 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2062-378_c.3070del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27768	NA	0	25	0	39
P-0022467-T01-IM6	SOMATIC	NTRK1	IRF2BP2	1	1	156844129	234743791	Intron of NTRK1(+):45bp before exon 9	Intron of IRF2BP2(-):193bp before exon 2	GRCh37	INVERSION	IRF2BP2 (NM_001077397) - NTRK1 (NM_002529) fusion (IRF2BP2 exon 1 fused with NTRK1 exons 9-17): c.1001-193:IRF2BP2_c.1178-46:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {IRF2BP2:NTRK1}	77899662	NA	0	62	10	90
P-0022470-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39880592	42872773	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2657:TMPRSS2_c.40-63048:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992181	NA	0	184	10	211
P-0022521-T01-IM6	SOMATIC	MGA	ARPP19	15	15	42032110	52842861	Intron of MGA(+):140bp before exon 14	3-UTR of ARPP19(-):1Kb after coding stop	GRCh37	INVERSION	MGA (NM_001164273) Rearrangement : c.4435-141:MGA_chr15:g.52842861inv	PRECISE		MANUAL_OK	5to5	-	10810751	NA	0	15	10	17
P-0022558-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30711570	30713559	Intron of TGFBR2(+):2Kb before exon 5	Exon 5 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.530-1560_c.959del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1989	NA	0	10	10	10
P-0022578-T02-IM6	SOMATIC	SDC4	ROS1	20	6	43962266	117652158	Intron of SDC4(-):557bp before exon 3	Intron of ROS1(-):2Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117652158::chr20:g.43962266)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	18	10	24
P-0022800-T01-IM6	SOMATIC	ARID3A	STK11	19	19	925726	1206992	Promoter of ARID3A(+):310bp from tx start	Exon 1 of STK11(+)	GRCh37	DUPLICATION	STK11 (NM_000455) - ARID3A (NM_005224) Rearrangement : c.80:STK11_c.-601:ARID3Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STK11:ARID3A}	281266	NA	0	7	10	7
P-0022800-T01-IM6	SOMATIC	PTPRS	FCAR	19	19	5273567	55393762	Exon 4 of PTPRS(-)	Intron of FCAR(+):3Kb before exon 2	GRCh37	INVERSION	FCAR (NM_002000) - PTPRS (NM_002850) Rearrangement :  c.71-2885:FCAR_c.265:PTPRSinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FCAR:PTPRS}	50120195	NA	0	36	10	36
P-0022911-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37864336	37884086	Intron of ERBB2(+):237bp before exon 3	Exon 27 of ERBB2(+)	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.226-238_c.3557del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19750	NA	0	16	10	16
P-0022967-T01-IM6	SOMATIC	ATR	ATR	3	3	142267020	142272410	Intron of ATR(-):268bp before exon 16	Intron of ATR(-):71bp after exon 12	GRCh37	DELETION	ATR (NM_001184) Rearrangement : c.2633+72_c.3172-268del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	5390	NA	0	17	10	18
P-0023011-T01-IM6	SOMATIC	FPGT-TNNI3K	NOTCH2	1	1	74765106	120510228	Intron of FPGT-TNNI3K(+):28Kb after exon 7	Exon 8 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) - FPGT-TNNI3K (NM_001112808) rearrangement: c.1281:NOTCH2_c.747+27714: FPGT-TNNI3Kinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH2:FPGT-TNNI3K}	45745122	NA	0	7	0	7
P-0023058-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55153541	55223056	Intron of EGFR(+):56Kb before exon 2	Intron of EGFR(+):466bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-56438_c.731-467del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	69515	NA	0	41	0	42
P-0023071-T01-IM6	SOMATIC	SUZ12P1	NF1	17	17	29095928	29449042	5-UTR of SUZ12P1(+):1Kb before coding start	Intron of NF1(+):27Kb after exon 1	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.60+26655:NF1_chr17:g.29095928dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {NF1:SUZ12P1}	353114	NA	0	16	10	53
P-0023091-T01-IM6	SOMATIC	KMT2B	PRKD2	19	19	36221556	47210279	Intron of KMT2B(+):39bp after exon 25	Intron of PRKD2(-):2Kb before exon 5	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.5276+39:KMT2B_chr19:g.47210279del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10988723	NA	0	11	10	16
P-0023091-T01-IM6	SOMATIC	LOC101929709	NBN	8	8	90544955	90971014	IGR: 185Kb before LOC101929709(-)	Exon 9 of NBN(-)	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.1063:NBN_chr8:g.90544955del	PRECISE		MANUAL_OK	3to5	-	426059	NA	0	2	7	2
P-0023102-T01-IM6	SOMATIC	GAST	BRCA1	17	17	39859920	41243562	IGR: 9Kb before GAST(+)	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: chr17:g.39859920_c.3986inv	PRECISE		MANUAL_OK	5to5	-	1383642	NA	0	4	10	4
P-0023119-T01-IM6	SOMATIC	CDH1	RAD21	16	8	68852231	117864146	Intron of CDH1(+):951bp before exon 11	Intron of RAD21(-):40bp after exon 11	GRCh37	TRANSLOCATION	RAD21 (NM_006265) - CDH1 (NM_004360) rearrangement: t(8;16)(q24.11;q22.1)(chr8:g.117864146::chr16:g.68852231)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RAD21:CDH1}	0	NA	0	5	10	5
P-0023192-T01-IM6	SOMATIC	RNF43	HSF5	17	17	56492816	56511985	Exon 2 of RNF43(-)	Intron of HSF5(-):12Kb before exon 6	GRCh37	INVERSION	RNF43 (NM_017763) rearrangement: c.123:RNF43_chr17:g.56511985inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	19169	NA	0	9	9	9
P-0023192-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53218213	53231051	Promoter of KDM5C(-):2Kb from tx start	Exon 13 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.1851_c.*3936del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12838	NA	0	31	10	32
P-0023273-T01-IM6	SOMATIC	VPS51	INPPL1	11	11	64878485	71949197	Intron of VPS51(+):232bp after exon 9	Exon 27 of INPPL1(+)	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: chr11:g.64878485_c.3664:INPPL1inv	PRECISE		MANUAL_OK	5to5	-	7070712	NA	0	20	10	23
P-0023314-T01-IM6	SOMATIC	TAOK1	NF1	17	17	27837607	29657191	Intron of TAOK1(+):274bp before exon 15	Intron of NF1(+):122bp before exon 39	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: chr17:g.27837607_c.5610-123:NF1del	PRECISE		MANUAL_OK	5to5	-	1819584	NA	0	16	10	17
P-0023324-T01-IM6	SOMATIC	FGFR2	ATE1	10	10	123239051	123403273	3-UTR of FGFR2(-):319bp after coding stop	IGR: 97Kb before ATE1(-)	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.*320_chr10:g.123403273inv	PRECISE		MANUAL_OK	5to5	-	164222	NA	0	21	10	22
P-0023324-T01-IM6	SOMATIC	DNM2	CARM1	19	19	10833447	11027455	Intron of DNM2(+):4Kb after exon 1	Intron of CARM1(+):2bp after exon 8	GRCh37	DUPLICATION	CARM1 (NM_199141) - DNM2 (NM_001005361) rearrangement: c.1020+2:CARM1_c.161+4368:DNM2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CARM1:DNM2}	194008	NA	0	8	8	8
P-0023464-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212109143	212578165	IGR: 131Kb before ERBB4(-)	Intron of ERBB4(-):94bp after exon 8	GRCh37	DELETION	ERBB4 (NM_005235) Rearrangement : chr2:g.212109143_c.997+95del	PRECISE		MANUAL_OK	3to5	-	469022	NA	0	11	10	11
P-0023519-T01-IM6	SOMATIC	PICALM	BRAF	11	7	85684364	140490919	Intron of PICALM(-):1Kb after exon 19	Intron of BRAF(-):3Kb after exon 8	GRCh37	TRANSLOCATION	BRAF (NM_004333) - PICALM (NM_007166) rearrangement:  t(7;11)(q34;q14.2)(chr7:g.140490919::chr11:g.85684364)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {BRAF:PICALM}	0	NA	0	13	10	14
P-0023546-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869250	42877268	Intron of TMPRSS2(-):795bp after exon 2	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+796_c.55+2609del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	8018	NA	0	63	10	70
P-0023588-T01-IM6	SOMATIC	POLD1	SIGLECL1	19	19	50918112	51762823	Exon 20 of POLD1(+)	5-UTR of SIGLECL1(+):10Kb before coding start	GRCh37	DELETION	POLD1 (NM_002691) - SIGLECL1(NM_173635) Rearrangement : c.2429:POLD1_c.-191+1669:SIGLECL1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {POLD1:SIGLECL1}	844711	NA	0	27	10	29
P-0023588-T01-IM6	SOMATIC	APC	SRP19	5	5	112176005	112187884	Exon 16 of APC(+)	IGR: 9Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.4714:APC_chr5:g.112187884del	PRECISE		MANUAL_OK	3to5	-	11879	NA	0	13	10	14
P-0023603-T01-IM6	SOMATIC	TSC1	AIDA	9	1	135779003	222846177	Intron of TSC1(-):34bp after exon 17	Intron of AIDA(-):477bp after exon 8	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(1;9)(q41,q34.13)(chr1:g.222846177::chr9:g.135779003)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TSC1:AIDA}	0	NA	0	44	10	44
P-0023643-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14225632	14628325	Intron of PRKACA(-):3Kb after exon 1	Intron of DNAJB1(-):467bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730)  fusion (DNAJB1 exon 1 fused with PRKACA exons 2-10) : c.212-467:DNAJB1_c.46+2682:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	402693	NA	0	13	10	14
P-0023707-T01-IM6	SOMATIC	TP53	EFNB3	17	17	7580536	7610583	5-UTR of TP53(-):8Kb before coding start	Intron of EFNB3(+):692bp before exon 2	GRCh37	INVERSION	TP53 (NM_000546) - EFNB3 (NM_001406) Rearrangement : c.-28-596:TP53_c.123-693inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TP53:EFNB3}	30047	NA	0	7	10	7
P-0023707-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878426	42867991	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exon 4):c.127-1486:TMPRSS2_c.40-60882:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2989565	NA	0	20	10	20
P-0023707-T01-IM6	SOMATIC	PLEKHG4B	SDHA	5	5	55450	233697	IGR: 85Kb before PLEKHG4B(+)	Exon 8 of SDHA(+)	GRCh37	DELETION	SDHA (NM_004168) Rearrangement : chr5:g.55450_c.1001del	PRECISE		MANUAL_OK	3to5	-	178247	NA	0	21	10	27
P-0023821-T01-IM6	SOMATIC	ATF7	BRAF	12	7	53913299	140483233	Intron of ATF7(-):2Kb before exon 12	Intron of BRAF(-):276bp before exon 10	GRCh37	TRANSLOCATION	ATF7 (NM_006856) - BRAF (NM_004333) Rearrangement :  t(7;12)(q34;q13.13)(chr7:g.140483233::chr12:g. 53913299)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ATF7:BRAF}	0	NA	0	53	10	57
P-0023848-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12870940	12874230	Exon 1 of CDKN1B(+)	3-UTR of CDKN1B(+):3Kb after coding stop	GRCh37	DELETION	CDKN1B (NM_004064) Rearrangement : c.167_c.*269del	PRECISE		MANUAL_OK	3to5	-	3290	NA	0	22	10	25
P-0023880-T01-IM6	SOMATIC	CDKN2A	COA6	9	1	21994303	234520989	Exon 1 of CDKN2A(-)	Promoter of COA6(+):12Kb from tx start	GRCh37	TRANSLOCATION	COA6 (NM_001206641) - CDKN2Ap14ARF (NM_058195) Rearrangement :  t(1;9)(q42.3;p21.3)(chr1:g.234520989::chr9:g.21994303)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {COA6:CDKN2A}	0	NA	0	16	10	16
P-0023942-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55089237	55222735	Intron of EGFR(+):2Kb after exon 1	Intron of EGFR(+):787bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+2179_c.890-788del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	133498	NA	0	236	10	623
P-0023961-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39950968	42868036	3-UTR of ERG(-):83Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 3-11):c.127-1531:TMPRSS2_c.-47-3297:ERGdel	PRECISE		MANUAL_OK	3to5	-	2917068	NA	0	285	10	316
P-0023961-T01-IM6	SOMATIC	EGFL7	TNS1	9	2	139566440	218708823	Exon 8 of EGFL7(+)	Intron of TNS1(-):3Kb after exon 17	GRCh37	TRANSLOCATION	EGFL7 (NM_201446) - TNS1 (NM_022648) rearrangement: t(2;9)(q35;q34.3)(chr2:g.218708823::chr9:g.139566440)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFL7:TNS1}	0	NA	0	85	10	82
P-0023971-T01-IM6	SOMATIC	SNAPC4	NOTCH1	9	9	139270096	139408912	3-UTR of SNAPC4(-):711bp after coding stop	Intron of NOTCH1(-):49bp after exon 13	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.2207+50:NOTCH1_chr9:g.139270096del	PRECISE		MANUAL_OK	3to5	-	138816	NA	0	55	10	57
P-0024095-T01-IM6	SOMATIC	TMPRSS2	GOLGA6B	21	15	42874147	72920652	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 26Kb before GOLGA6B(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q24.1;q22.3)(chr15:g.72920652::chr21:g.42874147)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	30
P-0024156-T01-IM6	SOMATIC	ABCB7	PAK7	X	20	74239104	9546947	IGR: 34Kb before ABCB7(-)	Exon 5 of PAK7(-)	GRCh37	TRANSLOCATION	PAK7 (NM_177990) rearrangement: t(X;20)(q13.3;p12.2)(chrX:g.74239104::chr20:g.9546947)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	174	10	171
P-0024237-T01-IM6	SOMATIC	ARMC6	MEF2B	19	19	19158415	19257584	Intron of ARMC6(+):4Kb after exon 3	Exon 6 of MEF2B(-)	GRCh37	DELETION	ARMC6 (NM_033415) - MEF2B (NM_001145785) rearrangement: c.204+3532:ARMC6_c.642:MEF2Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	99169	NA	0	8	10	8
P-0024263-T01-IM6	SOMATIC	RB1	RB1	13	13	48876569	48878155	Promoter of RB1(+):1Kb from tx start	Exon 1 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) Rearrangement : c.-1480_c.107del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1586	NA	0	13	10	13
P-0024321-T01-IM6	SOMATIC	EWSR1	CREM	22	10	29688471	35488798	Intron of EWSR1(+):5bp before exon 12	Intron of CREM(+):2Kb before exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -CREM (NM_181571) rearrangement: t(10;22)(p11.21;q12.2)(chr10:g.35488798::chr22:g.29688471)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREM}	0	NA	0	30	0	49
P-0024344-T01-IM6	SOMATIC	BRD4	SORCS1	19	10	15355232	108617375	Exon 13 of BRD4(-)	Intron of SORCS1(-):28Kb before exon 3	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - SORCS1 (NM_001013031) rearrangement: t(10;19)(q25.1;p13.2)(chr10:g.108617375::chr19:g.15355232)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRD4:SORCS1}	0	NA	0	12	10	12
P-0024374-T01-IM6	SOMATIC	CHEK2	LARGE	22	22	29099660	33624054	Intron of CHEK2(-):106bp before exon 8	IGR: 45Kb before LARGE(-)	GRCh37	INVERSION	CHEK2 (NM_007194) Rearrangement : c.847-106_chr22:g.33624054inv	PRECISE		MANUAL_OK	3to3	-	4524394	NA	0	12	10	12
P-0024394-T01-IM6	SOMATIC	LETM1	WHSC1	4	4	1846969	1961401	Intron of LETM1(-):3Kb before exon 3	Exon 17 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: chr4:g.1846969_c.3189del	PRECISE		MANUAL_OK	3to5	-	114432	NA	0	5	10	5
P-0024406-T01-IM6	SOMATIC	MITF	FOXP1	3	3	69943237	71026179	Intron of MITF(+):15Kb after exon 2	Exon 13 of FOXP1(-)	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: chr3:g.69943237_c.1443del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1082942	NA	0	2	6	2
P-0024488-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39931478	42876909	Intron of ERG(-):16Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+2968:TMPRSS2_c.39+16108:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2945431	NA	0	20	10	22
P-0024516-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117703579	117714513	Intron of ROS1(-):900bp after exon 16	Intron of ROS1(-):29bp before exon 11	GRCh37	DUPLICATION	ROS1 (NM_002944) rearrangement: c.1165-29_c.2496+901dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	10934	NA	0	43	10	48
P-0024526-T01-IM6	SOMATIC	MTAP	CDKN2A	9	9	21814419	21970789	Intron of MTAP(+):1Kb before exon 2	Intron of CDKN2A(-):111bp after exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.457+112:CDKN2A_chr9:g.21814419del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	156370	NA	0	18	10	18
P-0024592-T01-IM6	SOMATIC	CDH1	TANGO6	16	16	68857540	68922031	Intron of CDH1(+):11bp after exon 13	Intron of TANGO6(+):7Kb after exon 7	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.1981+11:CDH1_chr16:g.68922031inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	64491	NA	0	15	10	14
P-0024614-T01-IM6	SOMATIC	LINC00397	ERCC5	13	13	88748664	103528006	IGR: 295Kb before LINC00397(-)	Exon 15 of ERCC5(+)	GRCh37	INVERSION	ERCC5 (NM_000123) rearrangement: c.3314:ERCC5_chr13:g.88748664inv	PRECISE		MANUAL_OK	5to5	-	14779342	NA	0	13	10	13
P-0024630-T01-IM6	SOMATIC	LINC01483	TERT	17	5	67542492	1264801	IGR: 48Kb before LINC01483(+)	Intron of TERT(-):94bp before exon 11	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;17)(p15.33;q24.3)(chr5:g.1264801::chr17:g.67542492)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	5
P-0024686-T01-IM6	SOMATIC	TMPRSS2	PLCD3	21	17	42840366	43208249	Exon 12 of TMPRSS2(-)	Intron of PLCD3(-):1Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - PLCD3 (NM_133373) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.43208249::chr21:g.42840366)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	44	10	44
P-0024686-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42840400	41615041	Exon 12 of TMPRSS2(-)	Intron of ETV4(-):1Kb before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV4 (NM_001986) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41615041::chr21:g.42840400)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMPRSS2:ETV4}	0	NA	0	15	10	17
P-0024721-T01-IM6	SOMATIC	NELL2	KMT2D	12	12	44815829	49436208	IGR: 86Kb before NELL2(-)	Intron of KMT2D(-):95bp before exon 28	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: chr12:g.44815829_c.5868-95:KMT2Ddel	PRECISE		MANUAL_OK	3to5	-	4620379	NA	0	16	10	17
P-0024825-T01-IM6	SOMATIC	FAM47C	KDM6A	X	X	36934410	44918411	IGR: 92Kb before FAM47C(+)	Intron of KDM6A(+):62bp after exon 11	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.974+62:KDM6A_chrX:g.36934410inv	PRECISE		MANUAL_OK	5to5	-	7984001	NA	0	3	10	4
P-0024848-T01-IM6	SOMATIC	EPB41L1	PTPRT	20	20	34808272	40877415	Intron of EPB41L1(+):506bp after exon 20	Exon 15 of PTPRT(-)	GRCh37	INVERSION	PTPRT (NM_133170) - EPB41L1 (NM_012156) rearrangement: c.2281:PTPRT_c.2439+506:EPB41L1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTPRT:EPB41L1}	6069143	NA	0	38	10	54
P-0024959-T01-IM6	SOMATIC	TTLL6	MSI2	17	17	46887323	55754396	Intron of TTLL6(-):5Kb before exon 2	3-UTR of MSI2(+):420Kb after coding stop	GRCh37	DELETION	MSI2 (NM_138962) rearrangement: c.*7:MSI2_chr17:g.46887323del	PRECISE		MANUAL_OK	3to5	-	8867073	NA	0	5	10	5
P-0025013-T01-IM6	SOMATIC	ETV6	BCL2L14	12	12	12025353	12248366	Intron of ETV6(+):2Kb after exon 5	Intron of BCL2L14(+):502bp after exon 5	GRCh37	DUPLICATION	BCL2L14 (NM_138722) -ETV6 (NM_001987)  Rearrangement :  c.945+502:BCL2L14_c.1009+2450:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCL2L14:ETV6}	223013	NA	0	11	10	11
P-0025013-T01-IM6	SOMATIC	CUX2	SH2B3	12	12	111655464	111884812	Intron of CUX2(+):229bp before exon 3	Exon 4 of SH2B3(+)	GRCh37	DUPLICATION	SH2B3 (NM_005475) - CUX2(NM_015267) Rearrangement: c.901:SH2B3_c.175-230:CUX2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SH2B3:CUX2}	229348	NA	0	16	10	16
P-0025130-T01-IM6	SOMATIC	VSIG10	VTCN1	12	1	118524554	117753552	Intron of VSIG10(-):4Kb before exon 3	5-UTR of VTCN1(-):63Kb before coding start	GRCh37	TRANSLOCATION	VSIG10 (NM_019086 ) - VTCN1 (NM_024626) Rearrangement :  t(1;12)(p12;q24.22)(chr1:g.117753552; chr12:g.118524554)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {VSIG10:VTCN1}	0	NA	0	7	10	7
P-0025130-T01-IM6	SOMATIC	NF1	RAB11FIP4	17	17	29661855	29844218	Exon 40 of NF1(+)	Intron of RAB11FIP4(+):450bp before exon 4	GRCh37	DUPLICATION	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) Rearrangement:  c.337-451:RAB11FIP4_c.5813-1:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAB11FIP4:NF1}	182363	NA	0	69	10	78
P-0025137-T01-IM6	SOMATIC	ASIC2	RAD51D	17	17	31959619	33430482	Intron of ASIC2(-):521Kb before exon 2	Exon 4 of RAD51D(-)	GRCh37	DUPLICATION	ASIC2 (NM_001094) - RAD51D (NM_133629) Rearrangement : c.556-520534:ASIC2_c.322:RAD51Ddup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ASIC2:RAD51D}	1470863	NA	0	7	0	8
P-0025137-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39796417	42869679	Intron of ERG(-):934bp before exon 3	Intron of TMPRSS2(-):366bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -  ERG (NM_182918) Fusion (TMPRSS2 exon 2 fused with ERG exon 3): c.126+367:TMPRSS2_c.237-934:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3073262	NA	0	109	10	119
P-0025201-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15942197	15952158	Intron of NCOR1(-):549bp after exon 44	Exon 41 of NCOR1(-)	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.6536+1_c.6955+550del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9961	NA	0	22	10	25
P-0025221-T01-IM6	SOMATIC	ZNF615	CDKN2C	19	1	52505039	51436127	Intron of ZNF615(-):26bp after exon 5	Exon 1 of CDKN2C(+)	GRCh37	TRANSLOCATION	CDKN2C (NM_078626) - ZNF615 (NM_001199324) rearrangement: t(p32.3;q13.41)(chr1:g.51436127::chr19:g.52505039)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CDKN2C:ZNF615}	0	NA	0	27	10	29
P-0025221-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55157079	55222896	Intron of EGFR(+):53Kb before exon 2	Intron of EGFR(+):626bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-52900_c.890-627inv	PRECISE		MANUAL_OK	5to5	-	65817	NA	0	79	10	94
P-0025251-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683006	128662338	Exon 8 of EWSR1(+)	Intron of FLI1(+):10Kb after exon 5	GRCh37	TRANSLOCATION	FLI1 (NM_002017) - EWSR1 (NM_013986) Rearrangement : t(11;22)(q24.3 ;q12.2)(chr11:g.128662338::chr22:g.29683006)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FLI1:EWSR1}	0	NA	0	45	10	44
P-0025254-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) Rearrangement : c.67_c.68	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	92	10	122
P-0025319-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872780	42870723	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):607bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-607:TMPRSS2_c.40-55236:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2997943	NA	0	54	10	59
P-0025319-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845324	42850088	Exon 9 of TMPRSS2(-)	Intron of TMPRSS2(-):1Kb after exon 7	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.938_c.794+1011inv	PRECISE		MANUAL_OK	3to3	-	4764	NA	0	24	10	23
P-0025332-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872706	42875781	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+4096:TMPRSS2_c.40-55162:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3003075	NA	0	96	10	106
P-0025335-T01-IM6	SOMATIC	PLXDC1	AXIN2	17	17	37267041	63554239	Intron of PLXDC1(-):1Kb before exon 3	Exon 2 of AXIN2(-)	GRCh37	DUPLICATION	PLXDC1 (NM_020405) - AXIN2 (NM_004655) rearrangement: c.256-1397:PLXDC1_c.500:AXIN2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLXDC1:AXIN2}	26287198	NA	0	16	10	16
P-0025342-T01-IM6	SOMATIC	FLT4	MGAT1	5	5	180043693	180234520	Intron of FLT4(-):204bp before exon 23	5-UTR of MGAT1(-):16Kb before coding start	GRCh37	DELETION	MGAT1 (NM_001114617) - FLT4 (NM_182925) rearrangement: c.-127+1128:MGAT1_c.3097-204:FLT4del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MGAT1:FLT4}	190827	NA	0	3	9	3
P-0025395-T01-IM6	SOMATIC	RET	LINC01468	10	10	43600382	54301305	Intron of RET(+):17bp before exon 4	IGR: 91Kb before LINC01468(-)	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.626-18:RET_chr10:g.54301305inv	PRECISE		MANUAL_OK	5to5	-	10700923	NA	0	33	10	43
P-0025408-T01-IM6	SOMATIC	PIK3R3	PPP1R15B	1	1	46527659	204357692	Exon 6 of PIK3R3(-)	IGR: 15Kb before PPP1R15B(-)	GRCh37	INVERSION	PIK3R3 (NM_003629) rearrangement: c.706:PIK3R3_chr1:g.204357692inv	PRECISE		MANUAL_OK	3to3	-	157830033	NA	0	10	10	10
P-0025414-T01-IM6	SOMATIC	FOXO1	LINC01309	13	13	41133854	105039234	Exon 2 of FOXO1(-)	IGR: 962Kb before LINC01309(+)	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement: c.1774:FOXO1_chr13:g.105039234inv	PRECISE		MANUAL_OK	5to5	-	63905380	NA	0	25	10	32
P-0010823-T02-IM6	SOMATIC	IKZF1	POM121L12	7	7	50468207	52483056	Exon 8 of IKZF1(+)	IGR: 620Kb before POM121L12(+)	GRCh37	INVERSION	IKZF1 (NM_006060) Rearrangement : c.1446:IKZF1_chr7:g.52483056inv	PRECISE		MANUAL_OK	5to5	-	2014849	NA	0	14	10	20
P-0013121-T04-IM6	SOMATIC	LMNA	NTRK1	1	1	156109782	156845186	3-UTR of LMNA(+):25Kb after coding stop	Intron of NTRK1(+):125bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.*885:LMNA_c.1355-126:NTRK1del	PRECISE		MANUAL_OK	3to5	-	735404	NA	0	65	10	69
P-0016468-T02-IM6	SOMATIC	SRCIN1	MAP3K14	17	17	36699037	43363880	Intron of SRCIN1(-):1Kb after exon 18	Exon 5 of MAP3K14(-)	GRCh37	DELETION	MAP3K14 (NM_003954) - SRCIN1 (NM_025248) rearrangement: c.1069:MAP3K14_c.3417+1021:SRCIN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAP3K14:SRCIN1}	6664843	NA	0	62	10	65
P-0025374-T01-IM6	SOMATIC	NOTCH4	SIX2	6	2	32166863	45201308	Exon 24 of NOTCH4(-)	IGR: 31Kb before SIX2(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(2;6)(p21;p21.32)(chr2:g.45201308::chr6:g.32166863)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	56	10	62
P-0025376-T01-IM6	SOMATIC	ALK	EML4	2	2	29446744	42502362	Intron of ALK(-):350bp before exon 20	Intron of EML4(+):6Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-5628:EML4_c.3173-350:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13055618	NA	0	17	10	17
P-0025379-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72806055	72828384	IGR: 11Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8197:ZFHX3_chr16:g.72806055del	PRECISE		MANUAL_OK	3to5	-	22329	NA	0	70	10	141
P-0025390-T02-IM6	SOMATIC	WHSC1L1	FGFR1	8	8	38201702	38274750	Intron of WHSC1L1(-):3Kb after exon 2	Intron of FGFR1(-):73bp after exon 13	GRCh37	DELETION	FGFR1 (NM_001174067) - WHSC1L1 (NM_023034) rearrangement: c.1756+74:FGFR1_c.675+3313:WHSC1L1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGFR1:WHSC1L1}	73048	NA	0	8	0	8
P-0025405-T01-IM6	SOMATIC	NOTCH1	AGPAT2	9	9	139399952	139574779	Exon 25 of NOTCH1(-)	Intron of AGPAT2(-):3Kb before exon 2	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - AGPAT2 (NM_006412) rearrangement: c.4396:NOTCH1_c.183-2771:AGPAT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH1:AGPAT2}	174827	NA	0	2	10	3
P-0025454-T01-IM6	SOMATIC	CSF3R	PLXNA2	1	1	36933128	208621201	Intron of CSF3R(-):30bp after exon 15	IGR: 426Kb before PLXNA2(-)	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.1958+31:CSF3R_chr1:g.208621201inv	PRECISE		MANUAL_OK	5to5	-	171688073	NA	0	59	10	79
P-0025455-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868589	42872283	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.56-2167:TMPRSS2_c.18+1698:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3003694	NA	0	56	10	61
P-0025468-T01-IM6	SOMATIC	LOC100507420	WHSC1L1	8	8	37073664	38194986	IGR: 190Kb before LOC100507420(-)	Intron of WHSC1L1(-):1bp before exon 4	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: chr8:g.37073664_c.748-1:WHSC1L1inv	PRECISE		MANUAL_OK	3to3	-	1121322	NA	0	39	10	43
P-0025507-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88544573	12024078	Intron of NTRK3(-):32Kb after exon 14	Intron of ETV6(+):1Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) :  t(12;15)(p13.2;q25.3)(chr12:g.12024078::chr15:g.88544573)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	31	10	29
P-0025531-T01-IM6	SOMATIC	RET	TIMM23B	10	10	43611375	51582688	Intron of RET(+):656bp before exon 12	Intron of TIMM23B(+):150Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) RET (NM_020975) fusion: c.619-108NCOA4_c.2137-657RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7971313	NA	0	43	10	44
P-0025550-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49429789	49447118	Intron of KMT2D(-):1Kb before exon 35	Intron of KMT2D(-):14bp before exon 7	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.840-14_c.10232-1071del	PRECISE		MANUAL_OK	3to5	Deletion of 28 exons : out of frame	17329	NA	0	5	10	6
P-0025558-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68840820	68842373	Intron of CDH1(+):2Kb before exon 4	Exon 4 of CDH1(+)	GRCh37	DELETION	CDH1(NM_004360) Rearrangement : c.388-1507_c.434del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1553	NA	0	22	10	22
P-0025571-T01-IM6	SOMATIC	MIPOL1	FOXA1	14	14	37956212	38064202	Intron of MIPOL1(+):13Kb before exon 14	5-UTR of FOXA1(-):4Kb before coding start	GRCh37	DUPLICATION	FOXA1 (NM_004496) - MIPOL1 (NM_138731) rearrangement: c.-25:FOXA1_c.1032-12901:MIPOL1dup	PRECISE		MANUAL_OK	5to3	-	107990	NA	0	26	10	44
P-0025571-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867317	42872864	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10 ):  c.56-2748:TMPRSS2_c.18+2970:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3005547	NA	0	91	10	94
P-0025573-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11092136	11098306	5-UTR of SMARCA4(+):3Kb before coding start	Intron of SMARCA4(+):35bp before exon 6	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.-31-2661_c.860-36inv	PRECISE		MANUAL_OK	5to5	-	6170	NA	0	14	10	19
P-0025591-T01-IM6	SOMATIC	LOC100507420	WHSC1L1	8	8	37147510	38173334	IGR: 116Kb before LOC100507420(-)	Intron of WHSC1L1(-):95bp after exon 10	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: chr8:g.37147510_c.1986+96inv	PRECISE		MANUAL_OK	5to5	-	1025824	NA	0	5	10	6
P-0025593-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10246817	10249310	Exon 37 of DNMT1(-)	Intron of DNMT1(-):29bp before exon 34	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4588_c.3901-29del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2493	NA	0	10	10	10
P-0025594-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55207152	55222128	Intron of EGFR(+):3Kb before exon 2	Intron of EGFR(+):283bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2827_c.889+283del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	14976	NA	0	127	10	1924
P-0025595-T01-IM6	SOMATIC	PIK3R2	RXRB	19	6	18273076	33164798	Exon 8 of PIK3R2(+)	Intron of RXRB(-):415bp before exon 5	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) - RXRB (NM_021976) rearrangement: t(6;19)(p21.32;p13.11)(chr6:g.33164798::chr19:g.18273076)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PIK3R2:RXRB}	0	NA	0	5	10	5
P-0025601-T01-IM6	SOMATIC	PRH1-PRR4	ETV6	12	12	11225687	12015561	3-UTR of PRH1-PRR4(-):99Kb after coding stop	Intron of ETV6(+):7Kb before exon 5	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: chr12:g.11225687_c.464-6797inv	IMPPRECISE		MANUAL_OK	3to3	-	789874	NA	0	8	0	8
P-0025603-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3779544	3819270	Exon 31 of CREBBP(-)	Exon 15 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.2965_c.5504del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	39726	NA	0	63	10	73
P-0025603-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55224519	55231324	Exon 10 of EGFR(+)	Intron of EGFR(+):101bp before exon 14	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.1201_c.1632-102inv	PRECISE		MANUAL_OK	5to5	-	6805	NA	0	15	10	15
P-0025609-T01-IM6	SOMATIC	RET	SHROOM3	10	4	43611545	77664882	Intron of RET(+):486bp before exon 12	Intron of SHROOM3(+):2Kb after exon 5	GRCh37	TRANSLOCATION	SHROOM3 (NM_020859) - RET (NM_020975) rearrangement:  t(4;10)(q21.1;q11.21)(chr4:g.77664882::chr10:g.43611545)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SHROOM3:RET}	0	NA	0	47	10	51
P-0025609-T01-IM6	SOMATIC	DOT1L	TMPRSS9	19	19	2202663	2422614	Intron of DOT1L(+):35bp before exon 9	Intron of TMPRSS9(+):369bp after exon 13	GRCh37	DUPLICATION	TMPRSS9 (NM_182973) - DOT1L (NM_032482) rearrangement: c.2446+369:TMPRSS9_c.708-36:DOT1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS9:DOT1L}	219951	NA	0	71	10	76
P-0025609-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187554722	187770197	Intron of FAT1(-):115bp after exon 7	IGR: 261Kb before FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.4323+116_chr4:g.187770197inv	PRECISE		MANUAL_OK	5to5	-	215475	NA	0	18	10	18
P-0025609-T01-IM6	SOMATIC	FGFR4	DPP10	5	2	176518727	115223375	Exon 6 of FGFR4(+)	Intron of DPP10(+):23Kb after exon 1	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) - DPP10 (NM_001178034) rearrangement: t(2;5)(q14.1;q35.2)(chr2:g.115223375::chr5:g.176518727)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	38	10	56
P-0025686-T01-IM6	SOMATIC	TP53	TP53	17	17	7572952	7575137	Exon 11 of TP53(-)	Intron of TP53(-):1Kb before exon 10	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.994-1104_c.1157del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2185	NA	0	17	10	18
P-0025691-T01-IM6	SOMATIC	ATRX	NSDHL	X	X	76944304	152032520	Intron of ATRX(-):6bp after exon 7	Intron of NSDHL(+):1Kb after exon 5	GRCh37	DUPLICATION	ATRX (NM_000489) - NSDHL (NM_015922) rearrangement: c.594+7:ATRX_c.543+1252:NSDHLdup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	75088216	NA	0	26	10	30
P-0025693-T01-IM6	SOMATIC	DNMT1	EMBP1	19	1	10270971	121485157	Intron of DNMT1(-):88bp after exon 13	IGR: 224Kb before EMBP1(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(1;19)(p11.2;p13.2)(chr1:g.121485157::chr19:g.10270971)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	38
P-0025693-T01-IM6	SOMATIC	PLIN4	SMARCA4	19	19	4513773	11102090	Intron of PLIN4(-):57bp before exon 3	Intron of SMARCA4(+):91bp after exon 8	GRCh37	INVERSION	SMARCA4 (NM_003072) - PLIN4 (NM_001080400) rearrangement: c.1419+91:SMARCA4_c.214-57:PLIN4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SMARCA4:PLIN4}	6588317	NA	0	12	10	12
P-0025693-T01-IM6	SOMATIC	DNMT1	ZNF536	19	19	10277213	30723700	Intron of DNMT1(-):60bp after exon 10	IGR: 140Kb before ZNF536(+)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.843+61_chr19:g.30723700inv	PRECISE		MANUAL_OK	5to5	-	20446487	NA	0	38	10	41
P-0025693-T01-IM6	SOMATIC	SMARCA4	YJEFN3	19	19	11132765	19645800	Intron of SMARCA4(+):122bp after exon 19	Intron of YJEFN3(+):42bp before exon 3	GRCh37	DELETION	SMARCA4 (NM_003072) - YJEFN3 (NM_001190328) rearrangement:  c.2859+122:SMARCA4_c.169-43C:YJEFN3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SMARCA4:YJEFN3}	8513035	NA	0	8	10	8
P-0025693-T01-IM6	SOMATIC	PODNL1	DNAJB1	19	19	14062885	14628950	Intron of PODNL1(-):1Kb after exon 1	Exon 1 of DNAJB1(-)	GRCh37	DELETION	DNAJB13 (NM_153614) - PODNL1 (NM_001146254) rearrangement: c.211+1:DNAJB1_c.18+1046:PODNL1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJB1:PODNL1}	566065	NA	0	46	10	50
P-0025693-T01-IM6	SOMATIC	C19orf60	UPF1	19	19	18703364	18972787	Promoter of C19orf60(+):4Kb from tx start	Intron of UPF1(+):31bp before exon 18	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: chr19:g.18703364_c.2458-32del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {C19orf60:UPF1}	269423	NA	0	23	10	24
P-0025698-T01-IM6	SOMATIC	MTOR	PUM1	1	1	11300531	31397626	Exon 11 of MTOR(-)	IGR: 7Kb before PUM1(-)	GRCh37	DELETION	MTOR (NM_004958) rearrangement: chr1:g.31397626_c.1615del	PRECISE		MANUAL_OK	3to5	-	20097095	NA	0	7	10	7
P-0025663-T01-IM6	SOMATIC	LINC01192	PRKCI	3	3	163003734	169953009	3-UTR of LINC01192(-):17Kb after coding stop	Intron of PRKCI(+):8bp before exon 2	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: chr3:g.163003734_c.102-9:PRKCIinv	PRECISE		MANUAL_OK	5to5	-	6949275	NA	0	6	10	13
P-0025670-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49440216	49441841	Intron of KMT2D(-):9bp before exon 16	Exon 14 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4143_c.4419-9del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1625	NA	0	37	10	38
P-0008504-T03-IM6	SOMATIC	RET	CCDC6	10	10	43610583	61553732	Intron of RET(+):399bp after exon 11	Intron of CCDC6(-):498bp after exon 8	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion ( CCDC6 exons 1-8 fused to RET exons 12-20): c.1230+499:CCDC6_c.2136+399:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	17943149	NA	0	39	10	49
P-0015310-T04-IM6	SOMATIC	RET	RUFY3	10	4	43610427	71655251	Intron of RET(+):243bp after exon 11	Exon 12 of RUFY3(+)	GRCh37	TRANSLOCATION	RUFY3 (NM_001037442) - RET (NM_020975) rearrangement: t(4;10)(q13.3;q11.21)(chr4:g.71655251::chr10:g.43610427)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RUFY3:RET}	0	NA	0	87	10	100
P-0024620-T02-IM6	SOMATIC	BMPR1A	PGBD5	10	1	88683161	230468030	Exon 12 of BMPR1A(+)	Intron of PGBD5(-):559bp after exon 5	GRCh37	TRANSLOCATION	BMPR1A (NM_004329) Rearrangement :  t(1,10)(q42.11,q42.11)(chr1:g.230468030::chr10:g.88683161)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	52	10	57
P-0025637-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	10998878	11105686	Intron of CARM1(+):16Kb after exon 1	Intron of SMARCA4(+):9bp after exon 9	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - CARM1 (NM_199141) Rearrangement : c.1593+9:SMARCA4_c.220+16280:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SMARCA4:CARM1}	106808	NA	0	47	10	48
P-0025642-T01-IM6	SOMATIC	EP300	EP300	22	22	41498180	41558606	Intron of EP300(+):9Kb after exon 1	Intron of EP300(+):120bp before exon 21	GRCh37	DELETION	EP300 (NM_001429) Rearrangement : c.94+9078_c.3672-121del	PRECISE		MANUAL_OK	3to5	Deletion of 19 exons : out of frame	60426	NA	0	6	8	7
P-0025647-T01-IM6	SOMATIC	SHC2	MAP3K14	19	17	414516	43364016	Promoter of SHC2(-):2Kb from tx start	Exon 5 of MAP3K14(-)	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) Rearrangement :  t(17;19)(q21.31;p13.3)(chr17:g.43364016::chr19:g.50046598)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAP3K14:SHC2}	0	NA	0	6	10	7
P-0025650-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39902555	42872614	Intron of ERG(-):45Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 3) : c.56-2498:TMPRSS2_c.39+45031:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2970059	NA	0	126	10	137
P-0025676-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39927008	42876910	Intron of ERG(-):21Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.55+2967:TMPRSS2_c.39+20578:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2949902	NA	0	44	10	203
P-0025677-T01-IM6	SOMATIC	DEDD2	CIC	19	19	42722240	42799033	3-UTR of DEDD2(-):2Kb after coding stop	Exon 20 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) rearrangement: chr19:g.42722240_c.4517dup	PRECISE		MANUAL_OK	5to3	-	76793	NA	0	3	7	3
P-0025681-T01-IM6	SOMATIC	NSD1	RELL1	5	4	176637497	37669398	Exon 5 of NSD1(+)	Intron of RELL1(-):18Kb before exon 2	GRCh37	TRANSLOCATION	NSD1 (NM_022455) - RELL1 (NM_001085399) rearrangement: t(4;5)(p14;q35.3)(chr4:g.37669398::chr5:g.176637497)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NSD1:RELL1}	0	NA	0	15	10	15
P-0025683-T01-IM6	SOMATIC	CACNB1	ERBB2	17	17	37353947	37880265	5-UTR of CACNB1(-):20Kb before coding start	Intron of ERBB2(+):2bp after exon 19	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: chr17:g.37353947_c.2307+2inv	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {ERBB2:CACNB1}	526318	NA	0	5	0	5
P-0025683-T01-IM6	SOMATIC	HOXB13	LPO	17	17	46805585	56331549	Exon 1 of HOXB13(-)	Intron of LPO(+):622bp before exon 9	GRCh37	INVERSION	LPO (NM_006151) - HOXB13 (NM_006361) rearrangement: c.1106-623:LPO_c.371:HOXB13inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LPO:HOXB13}	9525964	NA	0	21	0	22
P-0025683-T01-IM6	SOMATIC	SRP68	RPTOR	17	17	74050297	78882651	Intron of SRP68(-):3Kb after exon 8	Exon 21 of RPTOR(+)	GRCh37	DUPLICATION	RPTOR (NM_020761) rearrangement: chr17:g.74050297_c.2442dup	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	4832354	NA	0	5	0	5
P-0025684-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25463542	25466735	Exon 18 of DNMT3A(-)	Intron of DNMT3A(-):31bp after exon 16	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c.2140_c.1936+32del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3193	NA	0	2	9	2
P-0025704-T01-IM6	SOMATIC	CDK6	CDK6	7	7	92247492	92249516	Exon 7 of CDK6(-)	Intron of CDK6(-):2Kb before exon 7	GRCh37	DELETION	CDK6 (NM_001145306) rearrangement: c.728_c.699-1995del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2024	NA	0	42	10	42
P-0018441-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55206190	55222200	Intron of EGFR(+):4Kb before exon 2	Intron of EGFR(+):355bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII deletion: c.89-3789_c.889+355del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	16010	NA	0	21	10	21
P-0020938-T02-IM6	SOMATIC	MAOB	KDM6A	X	X	43650588	44941909	Intron of MAOB(-):2Kb after exon 8	Intron of KDM6A(+):24bp after exon 21	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: chrX:g.43650588_c.3209+24:KDM6Adel	PRECISE		MANUAL_OK	3to5	-	1291321	NA	0	3	10	3
P-0025753-T01-IM6	SOMATIC	NF2	CSNK1E	22	22	30035126	38692195	Exon 3 of NF2(+)	Intron of CSNK1E(-):2Kb before exon 8	GRCh37	INVERSION	CSNK1E (NM_001894) - NF2 (NM_000268) Rearrangement : c.886-1655:CSNK1E_c.288:NF2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CSNK1E:NF2}	8657069	NA	1	29	10	36
P-0025755-T01-IM6	SOMATIC	PRKD1	CRIP2	14	14	30105537	105943993	Exon 7 of PRKD1(-)	Intron of CRIP2(+):609bp before exon 2	GRCh37	INVERSION	PRKD1 (NM_002742)  - CRIP2 (NM_001312) Rearrangement : c.1149:PRKD1_c.44-610:CRIP2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PRKD1:CRIP2}	75838456	NA	0	11	0	21
P-0025761-T01-IM6	SOMATIC	CDK12	PGAP3	17	17	37627854	37831067	Exon 2 of CDK12(+)	Intron of PGAP3(-):135bp before exon 4	GRCh37	DUPLICATION	CDK12 (NM_016507) Rearrangement : c.1769:CDK12_c.433-135:PGAP3dup	PRECISE		MANUAL_OK	5to3	-	203213	NA	0	57	10	62
P-0025761-T01-IM6	SOMATIC	PSD4	PAX8	2	2	113948855	113985025	Intron of PSD4(+):1Kb before exon 6	Intron of PAX8(-):192bp before exon 10	GRCh37	INVERSION	PAX8 (NM_003466) - PSD4 (NM_012455) Rearrangement : c.1088-192:PAX8_c.1629-1102:PSD4del	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAX8:PSD4}	36170	NA	0	3	10	5
P-0021170-T03-IM6	SOMATIC	TPM3	NTRK1	1	1	154142641	156845218	Intron of TPM3(-):234bp after exon 8	Intron of NTRK1(+):93bp before exon 12	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3 exons 1-8 fused to NTRK1 exons 12-17): c.775+235:TPM3_c.1355-94:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2702577	NA	0	53	10	75
P-0025711-T01-IM6	SOMATIC	OR1F1	CREBBP	16	16	3238048	3832788	IGR: 16Kb before OR1F1(+)	Exon 6 of CREBBP(-)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: chr16:g.3238048_c.1470inv	PRECISE		MANUAL_OK	5to5	-	594740	NA	0	31	10	50
P-0025719-T01-IM6	SOMATIC	WHSC1L1	FGFR1	8	8	38162161	38294436	Exon 14 of WHSC1L1(-)	Intron of FGFR1(-):7Kb before exon 4	GRCh37	DUPLICATION	WHSC1L1 (NM_023034) - FGFR1 (NM_001174067) rearrangement: c.2555:WHSC1L1_c.191-6970:FGFR1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WHSC1L1:FGFR1}	132275	NA	0	9	0	12
P-0025757-T01-IM6	SOMATIC	IRF4	DNAH8	6	6	401751	38953872	Exon 7 of IRF4(+)	Intron of DNAH8(+):2Kb after exon 87	GRCh37	DUPLICATION	DNAH8 (NM_001206927) - IRF4 (NM_002460) Rearrangement : c.13053+1789:DNAH8_c.1073:IRF4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNAH8:IRF4}	38552121	NA	0	10	10	11
P-0025763-T01-IM6	SOMATIC	STAG2	NBPF22P	X	5	123178980	85708121	Intron of STAG2(+):33bp before exon 8	IGR: 130Kb before NBPF22P(+)	GRCh37	TRANSLOCATION	STAG2 (NM_001042749) Rearrangement : t(X;5)(q25;q14.2)(chrX:g.123178980::chr5:g.85708121)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	10	34
P-0025793-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871901	42867090	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):585bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-585:TMPRSS2_c.-1597:ERGinv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2995189	NA	0	56	10	59
P-0025629-T02-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48895823	79961661	Exon 4 of TFE3(-)	Intron of ASPSCR1(+):5Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused to TFE3 exons 4-10): t(17;X)(q25.3;p11.23)(chr17:g.79961661::chrX:g.48895823)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASPSCR1:TFE3}	0	NA	0	25	10	24
P-0025734-T01-IM6	SOMATIC	MDM4	RBBP5	1	1	204495609	205064643	Intron of MDM4(+):47bp after exon 3	Intron of RBBP5(-):451bp before exon 13	GRCh37	INVERSION	MDM4 (NM_002393) - RBBP5 (NM_005057) rearrangement: c.153+47:MDM4_c.1397-451:RBBP5inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MDM4:RBBP5}	569034	NA	0	10	10	10
P-0025741-T02-IM6	SOMATIC	PIK3C2G	CAPZA3	12	12	18499795	18967992	Intron of PIK3C2G(+):25bp after exon 11	IGR: 77Kb before CAPZA3(+)	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1625+25:PIK3C2G_chr12:g.18967992del	PRECISE		MANUAL_OK	3to5	-	468197	NA	0	16	10	16
P-0025741-T02-IM6	SOMATIC	HOXB13	HOXB13	17	17	46805686	46806776	Exon 1 of HOXB13(-)	Promoter of HOXB13(-):5Kb from tx start	GRCh37	INVERSION	HOXB13 (NM_006361) rearrangement: c.-821_c.270inv	PRECISE		MANUAL_OK	3to3	-	1090	NA	0	2	4	2
P-0025770-T01-IM6	SOMATIC	TRIM49B	FGFR1	11	8	48968445	38275713	IGR: 85Kb before TRIM49B(+)	Intron of FGFR1(-):32bp after exon 11	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) rearrangement: t(8;11)(p11.23;p11.12)(chr8:g.38275713::chr11:g.48968445)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	11
P-0025783-T01-IM6	SOMATIC	NOTCH2	NBPF20	1	1	120465326	145075197	Exon 27 of NOTCH2(-)	Intron of NBPF20(+):238Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.4935:NOTCH2_chr1:g.145075197inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NBPF20:NOTCH2}	24609871	NA	0	11	0	11
P-0025791-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89351776	89458549	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):124Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: chr16:g.89458549_c.1174:ANKRD11del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	106773	NA	0	13	10	20
P-0025807-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60426727	123242181	Intron of BICC1(+):35Kb before exon 3	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion ( FGFR2 exons 1-17 fused to BICC1 exons 3-21): c.2301+895:FGFR2_c.238-35107:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62815454	NA	0	17	10	24
P-0025807-T01-IM6	SOMATIC	FGFR2	YTHDF3	10	8	123242317	64081967	Intron of FGFR2(-):894bp after exon 17	Exon 2 of YTHDF3(+)	GRCh37	TRANSLOCATION	YTHDF3 (NM_152758) - FGFR2 (NM_000141) rearrangement: t(8;10)(q12.3;q26.13)(chr8:g.64081967::chr10:g.123242317)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {YTHDF3:FGFR2}	0	NA	0	29	10	28
P-0025823-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867922	42870362	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):246bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.56-246:TMPRSS2_c.18+2365:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3002440	NA	0	199	10	220
P-0025823-T01-IM6	SOMATIC	TMPRSS2	SIMC1	21	5	42870360	175765852	Intron of TMPRSS2(-):244bp before exon 2	Intron of SIMC1(+):2Kb after exon 8	GRCh37	TRANSLOCATION	TMPRSS2 (NM_023034) - SIMC1 (NM_001308195) rearrangement: t(5;21)(q35.2;q22.3)(chr5:g.175765852::chr21:g.42870360)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SIMC1:TMPRSS2}	0	NA	0	183	10	182
P-0025823-T01-IM6	SOMATIC	RHEB	DNAJB6	7	7	151168377	157166988	Intron of RHEB(-):102bp after exon 6	Intron of DNAJB6(+):7Kb after exon 5	GRCh37	INVERSION	RHEB (NM_005614) - DNAJB6 (NM_058246) rearrangement: c.380+103:RHEB_c.346+6811:DNAJB6inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RHEB:DNAJB6}	5998611	NA	0	16	10	21
P-0025824-T01-IM6	SOMATIC	MEF2B	LINC01224	19	19	19260016	23671215	Intron of MEF2B(-):18bp after exon 3	IGR: 89Kb before LINC01224(-)	GRCh37	INVERSION	MEF2B (NM_001145785) rearrangement: c.258+19_chr19:g.23671215inv	IMPPRECISE		MANUAL_OK	5to5	-	4411199	NA	0	9	0	12
P-0025825-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397444	139438659	Intron of NOTCH1(-):189bp after exon 27	Intron of NOTCH1(-):105bp before exon 2	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.5167+190_c.62-105del	PRECISE		MANUAL_OK	3to5	Deletion of 26 exons : in frame	41215	NA	0	35	10	39
P-0025880-T01-IM6	SOMATIC	DNMT1	CASZ1	19	1	10265403	10857423	Exon 20 of DNMT1(-)	Promoter of CASZ1(-):161Kb from tx start	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(1;19)(p36.22;p13.2)(chr1:g.10857423::chr19:g.10265403)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CASZ1:DNMT1}	0	NA	0	6	10	6
P-0025921-T01-IM6	SOMATIC	KDM5A	CCDC85A	12	2	419156	56637105	Intron of KDM5A(-):26bp before exon 22	IGR: 226Kb before CCDC85A(+)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangment t(2;12)(p16.1;p13.33)(chr2:g.56637105::chr12:g.419156)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	8
P-0025924-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12869737	12871174	Promoter of CDKN1B(+):466bp from tx start	Exon 1 of CDKN1B(+)	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.-1037_c.401del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1437	NA	0	4	6	4
P-0025924-T01-IM6	SOMATIC	MED12	MED12	X	X	70357566	70360885	Intron of MED12(+):9bp before exon 41	Intron of MED12(+):178bp after exon 42	GRCh37	DELETION	MED12 (NM_005120) rearrangement: c.5827-10_c.6267+178del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	3319	NA	0	7	10	7
P-0013305-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55241088	55269595	Intron of EGFR(+):271bp after exon 17	Intron of EGFR(+):120bp after exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+271_c.3162+120dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28507	NA	0	97	10	125
P-0025601-T02-IM6	SOMATIC	PRH1-PRR4	ETV6	12	12	11225690	12015561	3-UTR of PRH1-PRR4(-):99Kb after coding stop	Intron of ETV6(+):7Kb before exon 5	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.464-6797:ETV6_chr12:g.11225690inv	IMPPRECISE		MANUAL_OK	3to3	-	789871	NA	0	19	0	19
P-0025835-T01-IM6	SOMATIC	FGFR2	KCNH8	10	3	123240192	18908797	Intron of FGFR2(-):657bp before exon 18	IGR: 281Kb before KCNH8(+)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(3;10)(p24.3;q26.13)(chr3:g.18908797::chr10:g.123240192)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	10	31
P-0025835-T01-IM6	SOMATIC	FGFR2	FOXP1	10	3	123242260	71178081	Intron of FGFR2(-):951bp after exon 17	Intron of FOXP1(-):16Kb before exon 3	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - FOXP1 (NM_001244814) rearrangement: t(3;10)(p13;q26.13)(chr3:g.71178081::chr10:g.123242260)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	27
P-0025838-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312565	43610972	Intron of KIF5B(-):601bp before exon 16	Intron of RET(+):788bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975)  fusion ( KIF5B exons 1-15 fused with RET exons 12-20.): c.1726-601:KIF5B_c.2136+788:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298407	NA	0	70	10	106
P-0025841-T01-IM6	SOMATIC	CDHR3	KMT2C	7	7	105612673	151873813	Intron of CDHR3(+):3Kb before exon 2	Exon 38 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.8725:KMT2C_chr7:g.105612673del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	46261140	NA	0	31	10	32
P-0025863-T01-IM6	SOMATIC	VSTM2A-OT1	EGFR	7	7	54712734	55222824	IGR: 88Kb before VSTM2A-OT1(+)	Intron of EGFR(+):698bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.890-699:EGFR_chr7:g.54712734del	PRECISE		MANUAL_OK	3to5	-	510090	NA	0	96	10	110
P-0025865-T01-IM6	SOMATIC	TBX3	UBE2H	12	7	115115295	129549163	Intron of TBX3(-):89bp after exon 5	Intron of UBE2H(-):28Kb before exon 2	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(7;12)(q32.1;q24.21)(chr7:g.129549163::chr12:g.115115295)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	35	0	35
P-0025928-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316873	43611910	Intron of KIF5B(-):482bp after exon 15	Intron of RET(+):121bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+483:KIF5B_c.2137-122C>T:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295037	NA	0	114	10	166
P-0025929-T01-IM6	SOMATIC	NAB2	LRP1	12	12	57486785	57509164	Intron of NAB2(+):34bp after exon 4	IGR: 13Kb before LRP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1143+34:NAB2_g.57509164inv	PRECISE		MANUAL_OK	3to3	-	22379	NA	0	125	10	131
P-0025933-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14221557	14627994	Intron of PRKACA(-):3Kb before exon 2	Intron of DNAJB1(-):136bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused with PRKACA exons 2-10) : c.212-136:DNAJB1_c.47-3336:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	406437	NA	0	55	10	55
P-0025935-T01-IM6	SOMATIC	LOC101928448	MAP3K1	5	5	55920869	56161216	IGR: 114Kb before LOC101928448(-)	Exon 5 of MAP3K1(+)	GRCh37	INVERSION	MAP3K1 (NM_005921) rearrangement: c.1085:MAP3K1_chr5:g.55920869inv	PRECISE		MANUAL_OK	5to5	-	240347	NA	0	12	10	13
P-0007343-T02-IM6	SOMATIC	INPPL1	ANK2	11	4	71943348	113898703	Exon 14 of INPPL1(+)	Intron of ANK2(+):73Kb after exon 2	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) - ANK2 (NM_001148) rearrangement: t(4;11)(q25-q26;q13.4)(chr4:g.113898703::chr11:g.71943348)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {INPPL1:ANK2}	0	NA	0	131	10	178
P-0007343-T02-IM6	SOMATIC	IER2	TBX3	19	12	13270583	115112036	IGR: 9Kb before IER2(+)	Exon 7 of TBX3(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569.3) rearrangement: t(12;19)(q24.21;p13.3)(chr12:g.115112036::chr19:g.13270583)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	212	10	211
P-0007343-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882799	42869384	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):661bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 4-10): c.126+662TMPRSS2_c.39+64787ERGdel.	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2986585	NA	0	255	10	320
P-0015230-T02-IM6	SOMATIC	NFKBIA	BRMS1L	14	14	35872432	36411222	Exon 3 of NFKBIA(-)	IGR: 116Kb before BRMS1L(+)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.471NFKBIA_chr14:g.36411222del.	PRECISE		MANUAL_OK	3to5	-	538790	NA	0	4	5	4
P-0015230-T02-IM6	SOMATIC	NF1	ASIC2	17	17	29677310	31973835	Exon 50 of NF1(+)	Intron of ASIC2(-):509Kb after exon 1	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7431:NF1_chr17:g.31973835del.	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2296525	NA	0	18	10	20
P-0018594-T03-IM6	SOMATIC	EXOC4	KMT2C	7	7	132968048	151878883	Intron of EXOC4(+):6Kb before exon 3	Exon 36 of KMT2C(-)	GRCh37	INVERSION	EXOC4 (NM_021807) - KMT2C (NM_170606) rearrangement: c.277-5628:EXOC4_c.6062:KMT2Cinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EXOC4:KMT2C}	18910835	NA	0	24	10	24
P-0020845-T02-IM6	SOMATIC	SMAD3	SMAD3	15	15	67454627	67457430	Intron of SMAD3(+):3Kb before exon 2	Intron of SMAD3(+):4bp after exon 2	GRCh37	DUPLICATION	SMAD3 (NM_005902) rearrangement: c.207-2606_c.400+4dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2803	NA	0	111	10	125
P-0020845-T02-IM6	SOMATIC	DLGAP1-AS5	TCEB1	18	8	4459373	74859058	IGR: 195Kb before DLGAP1-AS5(+)	Intron of TCEB1(-):3bp before exon 4	GRCh37	TRANSLOCATION	TCEB1 (NM_005648) rearrangement: t(8;18)(q21.11;p11.31)(chr8:g.74859058::chr18:g.4459373)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	26	10	49
P-0025892-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	70813577	71090582	IGR: 190Kb before FOXP1(-)	Exon 7 of FOXP1(-)	GRCh37	INVERSION	FOXP1 (NM_001244814) rearrangement: chr3:g.70813577_c.766inv	PRECISE		MANUAL_OK	3to3	-	277005	NA	0	34	10	33
P-0025895-T01-IM6	SOMATIC	FUNDC1	KDM6A	X	X	44430418	44938543	IGR: 48Kb before FUNDC1(-)	Exon 20 of KDM6A(+)	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: chrX:g.44430418_c.3091inv	PRECISE		MANUAL_OK	3to3	-	508125	NA	0	75	10	80
P-0009255-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265634	41266246	Intron of CTNNB1(+):62bp after exon 2	Intron of CTNNB1(+):2bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement : c.13+62_c.241+2del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	612	NA	1	13	10	13
P-0018048-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27099025	27099625	Exon 13 of ARID1A(+)	Intron of ARID1A(+):147bp after exon 14	GRCh37	DUPLICATION	ARID1A (NM_006015) Rearrangement : c.3441_c.3715+147del	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	600	NA	0	23	10	24
P-0024101-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29684215	39775485	Intron of EWSR1(+):379bp before exon 9	Exon 4 of ERG(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion (EWSR1 exons 1-8 fused with ERG exons 4-10) : t(21;22)(q22.2;q12.2)(chr21:g.39775485::chr22:g.29684215)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:ERG}	0	NA	0	135	10	132
P-0025328-T02-IM6	SOMATIC	SMO	AHCYL2	7	7	128850827	128876005	Exon 10 of SMO(+)	Intron of AHCYL2(+):11Kb after exon 1	GRCh37	INVERSION	SMO (NM_005631) - AHCYL2 (NM_015328) rearrangement: c.1674:SMO_c.363+10725:AHCYL2inv	PRECISE		MANUAL_OK	5to5	-	25178	NA	0	13	10	19
P-0025851-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878297	42869297	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):748bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991000	NA	0	24	0	26
P-0025987-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88613114	12028942	Intron of NTRK3(-):37Kb before exon 14	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion ( ETV6 exons 1-5 fused with NTRK3 exons 14-20): t(12;15)(p13.2;q25.3)(chr12:g.12028942::chr15:g.88613114)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	77	10	75
P-0025988-T01-IM6	SOMATIC	TBC1D10C	CCND1	11	11	67175484	69456082	Intron of TBC1D10C(+):965bp before exon 9	Exon 1 of CCND1(+)	GRCh37	DELETION	TBC1D10C (NM_198517) - CCND1 (NM_053056) fusion (TBC1D10C exons 1-8 with CCND1 exons 1-5): c.839-966TBC1D10C_c.1CCND1del.	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TBC1D10C:CCND1}	2280598	NA	0	79	10	83
P-0025988-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42870515	140484791	Intron of TMPRSS2(-):399bp before exon 2	Intron of BRAF(-):2Kb before exon 10	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - BRAF (NM_004333) rearrangement: t(7;21)(q34;q22.3)(chr7:g.140484791::chr21:g.42870515)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	127	10	153
P-0025988-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47127721	47135727	Exon 11 of SETD2(-)	Intron of SETD2(-):4Kb after exon 9	GRCh37	DUPLICATION	SETD2 (NM_014159): c.5361SETD2_c.5142+3718dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8006	NA	0	49	10	51
P-0026003-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44933781	44935956	Intron of KDM6A(+):2Kb before exon 18	Exon 18 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.2703-2161_c.2717del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2175	NA	0	6	0	6
P-0026009-T01-IM6	SOMATIC	TP53	GAS7	17	17	7574031	9978085	Exon 10 of TP53(-)	Intron of GAS7(-):55Kb before exon 2	GRCh37	DELETION	GAS7 (NM_201433) - TP53 (NM_000546) rearrangement: c.184-54871:GAS7_c.996:TP53del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GAS7:TP53}	2404054	NA	0	39	10	40
P-0026012-T01-IM6	SOMATIC	CBFB	RUFY4	16	2	67063596	218917363	Intron of CBFB(+):33bp before exon 2	5-UTR of RUFY4(+):38Kb before coding start	GRCh37	TRANSLOCATION	CBFB(NM_022845) - RUFY4 (NM_198483) rearrangement: t(2;16)(q35;q22.1)(chr2:g.218917363::chr16:g.67063596)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	16
P-0025972-T01-IM6	SOMATIC	MN1	KMT2A	22	11	27950438	118376844	IGR: 194Kb before MN1(-)	Exon 27 of KMT2A(+)	GRCh37	TRANSLOCATION	KMT2A (MLL1) (NM_001197104) Rearrangement : t(11;22)(q23.3;q12.1)(chr11:g.118376844::chr22:g.27950438)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	25	10	25
P-0025972-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55102376	55223099	Intron of EGFR(+):15Kb after exon 1	Intron of EGFR(+):423bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+15318_c.890-424del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	120723	NA	0	65	0	986
P-0025974-T01-IM6	SOMATIC	SPG11	B2M	15	15	44867940	45007703	Intron of SPG11(-):3Kb before exon 31	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) Rearrangement : c.5867-701:SPG1_c.150:B2Mdel	PRECISE		MANUAL_OK	3to5	-	139763	NA	0	24	10	24
P-0025980-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120465381	120492330	Exon 27 of NOTCH2(-)	Intron of NOTCH2(-):581bp before exon 16	GRCh37	INVERSION	NOTCH2 (NM_024408) Rearrangement : c.2480-581_c.4880inv	PRECISE		MANUAL_OK	3to3	-	26949	NA	0	13	10	13
P-0025980-T01-IM6	SOMATIC	POLE	POLE	12	12	133216982	133244941	Intron of POLE(-):1Kb before exon 40	Exon 19 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) Rearrangement :  c.2173+1_c.5379-1098del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27959	NA	0	16	10	17
P-0026050-T01-IM6	SOMATIC	BRAF	CNTNAP2	7	7	140494164	145389205	Exon 8 of BRAF(-)	IGR: 424Kb before CNTNAP2(+)	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1084:BRAF_chr7:g.145389205del	PRECISE		MANUAL_OK	3to5	-	4895041	NA	0	17	10	17
P-0026052-T01-IM6	SOMATIC	ELF3	LINC00467	1	1	201981616	211580713	Intron of ELF3(+):52bp after exon 4	5-UTR of LINC00467(+):25Kb before coding start	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.478+52_g.211580713inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	9599097	NA	0	11	10	11
P-0026052-T01-IM6	SOMATIC	ZFP90	CDH1	16	16	68605660	68863622	IGR: 32Kb before ZFP90(+)	Exon 15 of CDH1(+)	GRCh37	DELETION	CDH1(NM_004360) Rearrangement : g.68605660_c.2361del	PRECISE		MANUAL_OK	3to5	-	257962	NA	0	13	10	14
P-0000104-T02-IM6	SOMATIC	ZBTB7B	NTRK1	1	1	154987978	156845173	Exon 3 of ZBTB7B(+)	Intron of NTRK1(+): 139bp before exon 12	GRCh37	DELETION	ZBTB7B (NM_001252406) -  NTRK1 (NM_002529) Rearrangement : c.944:ZBTB7B_c.1355-139:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (ZBTB7B-NTRK1)	1857195	NA	0	26	26	26
P-0000277-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29686107	51193042	Intron of EWSR1(+):1Kb after exon 9	Intron of ATF1(+):3Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51193042::chr22:g.29686107)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	42	10	43
P-0000369-T02-IM6	SOMATIC	DOT1L	DOT1L	19	19	2225242	2226454	Intron of DOT1L(+):144bp before exon 26	Exon 27 of DOT1L(+)	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.3597-145_c.3934inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1212	NA	0	11	10	11
P-0000489-T02-IM6	SOMATIC	MYD88	MYD88	3	3	38182311	38186332	Exon 4 of MYD88(+)	IGR: 6Kb before MYD88(+)	GRCh37	DELETION	MYD88 (NM_002468) rearrangement: c.747_c.*3555del	PRECISE		MANUAL_OK	3to5	-	4021	NA	0	19	9	18
P-0000541-T03-IM6	SOMATIC	MEN1	MEN1	11	11	64571866	64572611	Exon 10 of MEN1(-)	Exon 9 of MEN1(-)	GRCh37	DELETION	MEN1 (NM_000244) Rearrangement : c.1256_1791del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	745	NA	0	37	0	38
P-0000541-T03-IM6	SOMATIC	BRCA2	BRCA2	13	13	32913847	32915534	Exon 11 of BRCA2(+)	Intron of BRCA2(+):201bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement : c.5355_c.6841+201del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1687	NA	0	58	10	63
P-0001242-T04-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860331	42867993	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.127-1488:TMPRSS2_c.18+9956:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007662	NA	0	46	10	46
P-0001372-T02-IM6	SOMATIC	TET2	TET2	4	4	106157831	106159765	Exon 3 of TET2(+)	Intron of TET2(+):1Kb after exon 3	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.2732_c.3409+1257del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1934	NA	0	11	10	11
P-0001372-T02-IM6	SOMATIC	RANBP17	MTOR	5	1	170503531	11300525	Intron of RANBP17(+):94Kb before exon 15	Exon 11 of MTOR(-)	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;5)(p36.22;q35.1)(chr1:g.11300525::chr5:g.170503531)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	21	10	20
P-0001372-T02-IM6	SOMATIC	CEP41	KMT2C	7	7	130083707	151874390	Promoter of CEP41(-):50Kb from tx start	Exon 38 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: g.130083707_c.8148inv	PRECISE		MANUAL_OK	3to3	-	21790683	NA	0	19	10	19
P-0001733-T03-IM6	SOMATIC	CECR2	EP300	22	22	18014543	41574761	Intron of CECR2(+):2Kb before exon 9	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: g.18014543_c.7046:EP300del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CECR2:EP300}	23560218	NA	0	15	10	17
P-0002101-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39896114	42870909	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):793bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-793:TMPRSS2_c.39+51472:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2974795	NA	0	17	10	18
P-0002622-T03-IM6	SOMATIC	DNMBP	KMT2C	10	7	101616120	151851626	IGR: 19Kb before DNMBP(-)	Intron of KMT2C(-):96bp before exon 47	GRCh37	TRANSLOCATION	KMT2C (NM_170606) Rearrangement : t(7,10)(q36.1,q24.32)(chr7:g.151851626::chr10:g.101616120)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	8
P-0002841-T02-IM6	SOMATIC	BCAS3	BRIP1	17	17	58855288	59853693	Intron of BCAS3(+): 30Kb before exon 7	Intron of BRIP1(-): 69bp after exon 14	GRCh37	DELETION	BRIP1 (NM_032043) - BCAS3 (NM_001099432) rearrangement: c.2097+69:BRIP1_c.404-30077:BCAS3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	998405	NA	0	11	9	11
P-0002978-T06-IM6	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12028576::chr15:g.88506571)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	94	33	92
P-0002978-T07-IM6	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-):23Kb before exon 15	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12028576::chr15:g.88506571)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	165	10	165
P-0003150-T03-IM6	SOMATIC	MYC	MLLT4	8	6	128753250	168309690	3-UTR of MYC(+):4Kb after coding stop	Intron of MLLT4(+):2Kb after exon 13	GRCh37	TRANSLOCATION	MYC (NM_002467) Rearrangement : t(6,8)(q27,q24.21)(chr6:g.168309690::chr8:g.128753250)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	43	10	40
P-0003195-T02-IM6	SOMATIC	TPK1	KMT2C	7	7	144838860	151845617	IGR: 690Kb before TPK1(-)	Exon 52 of KMT2C(-)	GRCh37	INVERSION	MLL3 (NM_170606) Rearrangement : chr7:g.144838860_c.13395:KMT2Cinv	PRECISE		MANUAL_OK	3to3	-	7006757	NA	0	54	10	53
P-0003329-T02-IM6	SOMATIC	LMNA	NTRK1	1	1	156100546	156845200	Exon 3 of LMNA(+)	Intron of NTRK1(+):111bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) Fusion (LMNA exon2 fused with NTRK1 exon12 ): c.495:LMNA_c.1355-112:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMNA:NTRK1}	744654	NA	0	10	10	10
P-0003329-T02-IM6	SOMATIC	AXIN1	AXIN1	16	16	343643	344783	Exon 8 of AXIN1(-)	Intron of AXIN1(-):1Kb before exon 8	GRCh37	DELETION	AXIN1 (NM_003502) Rearrangement: c.1956-1065_c.2031del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1140	NA	0	6	10	7
P-0003357-T02-IM6	SOMATIC	ETV6	IPO8	12	12	12008682	30656812	Intron of ETV6(+):2Kb after exon 4	IGR: 125Kb before IPO8(-)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.463+2187:ETV6_chr12:g.30656812inv	PRECISE		MANUAL_OK	3to3	-	18648130	NA	0	6	10	6
P-0003684-T02-IM6	SOMATIC	ALOX12B	BRAF	17	7	7963177	140486105	IGR: 13Kb before ALOX12B(-)	Intron of BRAF(-):1Kb after exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;17)(q34;p13.1)(chr7:g.140486105::chr17:g.7963177)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	82	10	82
P-0003892-T02-IM6	SOMATIC	SMAD2	SMAD2	18	18	45372239	45381556	Intron of SMAD2(-):68bp before exon 9	Intron of SMAD2(-):4Kb before exon 7	GRCh37	DELETION	SMAD2 (NM_001003652) rearrangement: c.731-3858_c.998-68del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	9317	NA	0	14	10	15
P-0004163-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684085	32416516	Intron of EWSR1(+):509bp before exon 9	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) Fusion (EWSR1 exons 1-8 with WT1 exons 8-10) : t(11;22)(11q13;22q12.2)(chr11:g.32416516::chr22:g.29684085)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	60	10	58
P-0004314-T02-IM6	SOMATIC	NRIP1	TMPRSS2	21	21	16348263	42879320	5-UTR of NRIP1(-):11Kb before coding start	Intron of TMPRSS2(-):556bp after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement : c.55+557:TMPRSS2_c.-334-7416:NRIP1inv	PRECISE		MANUAL_OK	3to3	-	26531057	NA	0	7	10	7
P-0004835-T02-IM6	SOMATIC	PTRH2	BRIP1	17	17	57784489	59770772	5-UTR of PTRH2(-):10Kb before coding start	Intron of BRIP1(-):18bp after exon 18	GRCh37	DELETION	BRIP1 (NM_032043) - PTRH2 (NM_016077) rearrangement: c.2575+19: BRIP1_c.-1+243: PTRH2del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {BRIP1:PTRH2}	1986283	NA	0	278	10	344
P-0005065-T04-IM6	SOMATIC	MRE11A	LOC403312	11	11	94226059	125397564	5-UTR of MRE11A(-):73Kb before coding start	IGR: 32Kb before LOC403312(+)	GRCh37	DELETION	MRE11A(NM_005591)  Rearrangement :  c.-92:MRE11A_chr11:125397563del	PRECISE		MANUAL_OK	3to5	-	31171505	NA	0	19	10	19
P-0005065-T04-IM6	SOMATIC	EP300	TOP2A	22	17	41523649	38565758	Exon 4 of EP300(+)	Intron of TOP2A(-):876bp before exon 11	GRCh37	TRANSLOCATION	EP300(NM_001429) Rearrangement :  t(22;17)(22q13.2;17q21.2)(chr22:g.41523648::chr17:g.38565813)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	47	10	48
P-0005188-T02-IM6	SOMATIC	AGO2	PTK2	8	8	141569696	141943134	Intron of AGO2(-):68bp before exon 6	Intron of PTK2(-):42Kb before exon 3	GRCh37	DELETION	PTK2 (NM_005607) - AGO2 (NM_012154) rearrangement: c.35-42266:PTK2_c.656-68:AGO2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PTK2:AGO2}	373438	NA	0	15	10	17
P-0005445-T03-IM6	SOMATIC	MLL3	MLL3	7	7	151860216	152044704	Exon 43 of MLL3(-)	Intron of MLL3(-): 11Kb after exon 2	GRCh37	DUPLICATION	MLL3 (NM_170606) Rearrangement : c.250+10968_c.10446dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	184488	NA	0	91	85	86
P-0005953-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39804588	42876716	Intron of ERG(-): 9Kb before exon 5	Intron of TMPRSS2(-): 3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 3-10): c.55+3161:TMPRSS2_c.237-9105:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3072128	NA	0	22	31	22
P-0006008-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139401432	139425500	Intron of NOTCH1(-):7bp before exon 23	Intron of NOTCH1(-):7Kb before exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.3644-7_c.141-7069del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 20 exons : out of frame	24068	NA	0	7	0	8
P-0006950-T02-IM6	SOMATIC	ALK	EML4	2	2	29447384	42524958	Intron of ALK(-):942bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 with ALK exons20-29): c.1489+2302:EML4_c.3172+943:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077574	NA	0	45	10	45
P-0007080-T03-IM6	SOMATIC	EGFR	LIMK1	7	7	55266441	73499466	Exon 23 of EGFR(+)	Intron of LIMK1(+):611bp before exon 2	GRCh37	INVERSION	EGFR (NM_005228) - LIMK1 (NM_002314)  rearrangement: c.2733:EGFR_c.56-612:LIMK1inv	IMPPRECISE		MANUAL_OK	5to5	-	18233025	NA	0	9	0	10
P-0007082-T02-IM6	SOMATIC	TACC3	FGFR3	4	4	1737170	1808872	Intron of TACC3(+):118bp after exon 7	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (exons 1-18 of FGFR3 fused to exons 8-16 of TACC3): c.2304:FGFR3_1644+118:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71702	NA	0	30	10	31
P-0007082-T02-IM6	SOMATIC	SESN1	HS3ST5	6	6	109322640	115250584	Exon 3 of SESN1(-)	IGR: 874Kb before HS3ST5(-)	GRCh37	DELETION	SESN1 (NM_014454) rearrangement: c.397_g.115250584del	PRECISE		MANUAL_OK	3to5	-	5927944	NA	0	88	10	96
P-0007307-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39844414	42869901	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):144bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 2 fused to ERG exon2): c.126+145:TMPRSS2_c.18+25873:ERG	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3025487	NA	0	39	0	40
P-0007898-T02-IM6	SOMATIC	C17orf104	MAP3K14	17	17	42741394	43350691	Intron of C17orf104(+):1Kb before exon 4	Intron of MAP3K14(-):178bp after exon 9	GRCh37	INVERSION	MAP3K14 (NM_003954) - C17orf104 (NM_001145080) Rearrangement : c.1656+179:MAP3K1_c.360-1358:C17orf104inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MAP3K14:C17orf104}	609297	NA	0	7	10	7
P-0008334-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11165487	11169537	Intron of SMARCA4(+):3Kb before exon 31	Exon 32 of SMARCA4(+)	GRCh37	INVERSION	SMARCA4 (NM_003072) Rearrangement : c.4425-3445_4606inv	PRECISE		MANUAL_OK	5to5	-	4050	NA	0	18	10	28
P-0008334-T02-IM6	SOMATIC	SMARCA4	CACNA1A	19	19	11170641	13533084	Intron of SMARCA4(+):79bp before exon 34	Intron of CACNA1A(-):31Kb after exon 3	GRCh37	INVERSION	SMARCA4 (NM_003072) - CACNA1A (NM_001127222)  Rearrangement : c.4768+80:SMARCA4_c.539+30606:CACNA1Ainv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SMARCA4:CACNA1A}	2362443	NA	0	24	10	25
P-0008599-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36216393	36218876	Exon 12 of KMT2B(+)	Exon 18 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) : c.3656_4487inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2483	NA	0	13	10	12
P-0008695-T02-IM6	SOMATIC	TP53	EIF5	17	14	7577159	103799131	Intron of TP53(-):4bp before exon 8	Promoter of EIF5(+):1Kb from tx start	GRCh37	TRANSLOCATION	EIF5 (NM_001969 ) - TP53 (NM_000546) rearrangement: t(14;17)(q32.32;p13.1)(chr14:g.103799131::chr17:g.7577159)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EIF5:TP53}	0	NA	0	112	10	112
P-0008695-T02-IM6	SOMATIC	MITF	MIR4444-1	3	3	69998105	75341861	Intron of MITF(+):96bp before exon 6	IGR: 78Kb before MIR4444-1(+)	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.763-97_chr3:g.75341861inv	PRECISE		MANUAL_OK	5to5	-	5343756	NA	0	3	10	5
P-0008978-T02-IM6	SOMATIC	APC	APC	5	5	112073020	112175702	Promoter of APC(+):535bp from tx start	Exon 16 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement : c.-621_c.4411dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	102682	NA	0	72	10	81
P-0009056-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857843	42870980	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):864bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-864:TMPRSS2_c.18+12444:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013137	NA	0	73	10	76
P-0009450-T02-IM6	SOMATIC	NPRL3	AXIN1	16	16	146617	359938	Intron of NPRL3(-):2Kb after exon 6	Intron of AXIN1(-):34bp after exon 4	GRCh37	DELETION	AXIN1 (NM_003502) - NPRL3 (NM_001077350) Rearrangement : c.1116+35:AXIN1_c.924+1526:NPRL3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AXIN1:NPRL3}	213321	NA	0	52	10	57
P-0009450-T02-IM6	SOMATIC	RASA1	RASA1	5	5	86628663	86642512	Intron of RASA1(+):204bp after exon 3	Exon 7 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) Rearrangement : c.828+204_c.1073del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13849	NA	0	34	10	34
P-0009451-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55193448	55222162	Intron of EGFR(+):17Kb before exon 2	Intron of EGFR(+):317bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :c.89-16531_c.889+317del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	28714	NA	0	25	10	26
P-0009463-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42856766	42867125	Intron of TMPRSS2(-): 4Kb after exon 5	Intron of TMPRSS2(-): 620bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) Rearrangement : c.127-620_c.556+3555inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	10359	NA	0	6	17	7
P-0009463-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974794	21978614	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-): 7Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.-3788_c.33del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3820	NA	0	12	24	12
P-0009640-T02-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42867556	14024117	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 2Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) Fusion (TMPRSS2 exons 1-2 fused with ETV1 exons 5-12):  t(7;21)(p21.2;q22.3)(chr7:g.14024117::chr21:g.42867556)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-ETV1)	0	NA	0	5	0	5
P-0009640-T02-IM6	SOMATIC	ABL1	NUP214	9	9	133760335	134001022	Exon 11 of ABL1(+)	5-UTR of NUP214(+): 70bp before coding start	GRCh37	INVERSION	ABL1 (NM_005157) Rearrangement : c.2658:ABL1_3:c.-70:NUP214inv	PRECISE		MANUAL_OK	5to5	-	240687	NA	0	10	18	10
P-0009943-T02-IM6	SOMATIC	KMT2D	KMT2D	12	12	49439743	49443940	Exon 18 of KMT2D(-)	Exon 11 of KMT2D(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.3431_c.4701dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4197	NA	0	141	10	172
P-0009943-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151877182	151889083	Exon 37 of KMT2C(-)	Intron of KMT2C(-):2Kb after exon 31	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.4660+2011_c.7179dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11901	NA	0	31	10	31
P-0010507-T03-IM6	SOMATIC	NOTCH3	CNTNAP4	19	16	15291977	76278027	Intron of NOTCH3(-):4bp before exon 18	IGR: 33Kb before CNTNAP4(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) Rearrangement : t(16,19)(q23.1,p13.12)(chr16:g.76278027::chr19:g.15291977)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	53	10	55
P-0010507-T03-IM6	SOMATIC	STK11	STK11	19	19	1218719	1221947	Intron of STK11(+):220bp after exon 2	Exon 7 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) Rearrangement: c.374+220_c.863-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3228	NA	0	41	10	42
P-0010796-T02-IM6	SOMATIC	MGA	MGA	15	15	42046870	42057227	Intron of MGA(+):105bp after exon 18	Exon 23 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) Rearrangement : c.7139+105_7887del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10357	NA	0	59	10	61
P-0010796-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39838364	42871527	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-1410:TMPRSS2_c.19-20820:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3033163	NA	0	167	10	208
P-0010983-T02-IM6	SOMATIC	STAT3	CNOT2	17	12	40475061	70671823	Exon 20 of STAT3(-)	5-UTR of CNOT2(+):183bp before coding start	GRCh37	TRANSLOCATION	CNOT2 (NM_014515) - STAT3 (NM_139276) Rearrangement : t(12,17)(q15,q21.1)(chr12:g.70671823::chr17:g.40475061)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CNOT2:STAT3}	0	NA	0	40	10	40
P-0010983-T02-IM6	SOMATIC	E2F3	E2F3	6	6	20443236	20481434	Intron of E2F3(+):37Kb before exon 2	Intron of E2F3(+):2bp before exon 3	GRCh37	DELETION	E2F3 (NM_001949) Rearrangement : c.394-36841_c.506-3del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	38198	NA	0	12	10	13
P-0011100-T02-IM6	SOMATIC	ERRFI1	LOC102724539	1	1	8073478	8266076	Exon 4 of ERRFI1(-)	Promoter of LOC102724539(+):3Kb from tx start	GRCh37	DELETION	ERRFI1 (NM_018948) rearrangement: c.1181G:ERRFI1_chr1:g.8266076del	PRECISE		MANUAL_OK	3to5	-	192598	NA	0	25	10	26
P-0011198-T02-IM6	SOMATIC	TMPRSS2	ETV5	21	3	42867759	185827431	Intron of TMPRSS2(-): 1Kb before exon 3	Promoter of ETV5(-): 530bp from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) rearrangement : t(3;21)(q27.2;q22.3)(chr3:g.185827431::chr21:g.42867759)	IMPRECISE		MANUAL_OK	5to3	Transcript fusion (TMPRSS2-ETV5)	0	NA	0	29	0	28
P-0011203-T03-IM6	SOMATIC	ALK	EML4	2	2	29447055	42501139	Intron of ALK(-):661bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304)  fusion (EML4 exon 5 fused to ALK exon 20):  c.494-6851:EML4_c.3173-661:ALKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054084	NA	0	24	0	23
P-0011537-T02-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098797	178102020	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.248_c.46-3021del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3223	NA	0	73	10	75
P-0012109-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874244	42875429	Intron of ERG(-): 57Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 4-11) : c.55+4448:TMPRSS2_c.40-56700:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001185	NA	0	102	163	329
P-0012223-T02-IM6	SOMATIC	CASC17	SOX9	17	17	69532781	70120449	IGR: 439Kb before CASC17(-)	Exon 3 of SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: chr17:g.69532781_c.1451del	PRECISE		MANUAL_OK	3to5	-	587668	NA	0	98	10	110
P-0012257-T03-IM6	SOMATIC	LPCAT2	FGFR3	16	4	55556796	1808708	Intron of LPCAT2(+):3Kb before exon 2	Intron of FGFR3(+):47bp after exon 17	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - LPCAT2 (NM_017839) rearrangement: t(4;16)(p16.3;q12.2)(chr4:g.1808708::chr16:g.55556796)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:LPCAT2}	0	NA	0	101	10	119
P-0012451-T02-IM6	SOMATIC	CEP85	NOTCH2	1	1	26564569	120469050	5-UTR of CEP85(+):2Kb before coding start	Intron of NOTCH2(-):71bp after exon 24	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: g.26564569_c.4005+72del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	93904481	NA	0	36	10	38
P-0012552-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	118392044	118394003	Exon 35 of KMT2A(+)	3-UTR of KMT2A(+):87Kb after coding stop	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.11555_c.*1116del	PRECISE		MANUAL_OK	3to5	-	1959	NA	0	16	10	16
P-0012552-T02-IM6	SOMATIC	SMARCB1	SMARCB1	22	22	24145488	24169076	Exon 5 of SMARCB1(+)	Intron of SMARCB1(+):1Kb after exon 7	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.507_c.986+1474del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	23588	NA	0	3	10	3
P-0012572-T02-IM6	SOMATIC	POLE	POLE	12	12	133256447	133257842	Intron of POLE(-):92bp after exon 5	Exon 2 of POLE(-)	GRCh37	DUPLICATION	POLE (NM_006231) rearrangement: c.86_c.423+93dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1395	NA	0	42	10	47
P-0012651-T02-IM6	SOMATIC	RAD50	FSTL4	5	5	131927081	132682968	Exon 10 of RAD50(+)	Intron of FSTL4(-): 31Kb before exon 5	GRCh37	DUPLICATION	RAD50 (NM_005732) Rearrangement : c.1618:RAD50_c.410-30624:FSTL4dup	PRECISE		MANUAL_OK	5to3	-	755887	NA	0	10	12	10
P-0012675-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151871411	152079457	Intron of KMT2C(-):84bp before exon 39	Intron of KMT2C(-):24Kb before exon 2	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.9263-84_c.162-23697del	PRECISE		MANUAL_OK	3to5	Deletion of 37 exons : out of frame	208046	NA	0	31	10	36
P-0012829-T02-IM6	SOMATIC	HIST1H3D	OR2B6	6	6	26197293	27965778	Exon 2 of HIST1H3D(-)	IGR: 41Kb before OR2B6(+)	GRCh37	DUPLICATION	HIST1H3D (NM_003530) rearrangement: c.186_chr6:g.27965778dup	PRECISE		MANUAL_OK	5to3	-	1768485	NA	0	11	10	11
P-0013074-T02-IM6	SOMATIC	NF1	EPHA7	17	6	29694222	93849155	Intron of NF1(+):7Kb after exon 57	IGR: 101Kb before EPHA7(-)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(6;17)(q16.1;q11.2)(chr6:g.93849155::chr17:g.29694222)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	49	10	50
P-0013182-T02-IM6	SOMATIC	CTCF	CTCF	16	16	67649540	67654670	Intron of CTCF(+): 1Kb before exon 5	Exon 6 of CTCF(+)	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.953-1108_c.1157dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	5130	NA	0	9	15	9
P-0013196-T03-IM6	SOMATIC	NTRK3	ETV6	15	12	88501357	12036072	Intron of NTRK3(-): 17Kb before exon 14	Intron of ETV6(+): 1Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exon5 fused to NTRK3 exon15): t(12;15)(p13.2;q25.3)(chr12:g.12036072::chr15:g.88501357)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	39	14	39
P-0013544-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55224414	55227277	Intron of EGFR(+):37bp before exon 10	Intron of EGFR(+):554bp before exon 12	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1134-38_c.1299-555del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2863	NA	0	5	10	5
P-0013603-T02-IM6	SOMATIC	KCNMB2-AS1	PIK3CA	3	3	178403769	178943704	3-UTR of KCNMB2-AS1(-):174Kb after coding stop	Intron of PIK3CA(+):45bp before exon 17	GRCh37	DELETION	PIK3CA (NM_006218) Rearrangement : chr3:g.178403769_c.2417-46del	PRECISE		MANUAL_OK	3to5	-	539935	NA	0	13	10	13
P-0013613-T02-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56173934	56175053	Intron of MAP3K1(+):872bp before exon 11	Intron of MAP3K1(+):125bp after exon 11	GRCh37	INVERSION	MAP3K1 (NM_005921) Rearrangement : c.1966-873_c.2087+125inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1119	NA	0	2	9	2
P-0013844-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871879	42867863	Intron of ERG(-): 54Kb before exon 4	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-54335:ERG_c.127-1358:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ERG-TMPRSS2)	2995984	NA	0	37	44	36
P-0013956-T03-IM6	SOMATIC	BRCA2	BRCA2	13	13	32912067	32914761	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.3575_c.6269inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2694	NA	0	87	10	87
P-0014004-T02-IM6	SOMATIC	CDC42EP5	TNFRSF14	19	1	54979681	2494783	5-UTR of CDC42EP5(-): 3Kb before coding start	3-UTR of TNFRSF14(+): 71bp after coding stop	GRCh37	TRANSLOCATION	TNFRSF14 (NM_003820) rearrangement: t(1;19)(p36.32; q13.42)(chr1:g.2494783::chr19:g.54979682)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	102	0	130
P-0014004-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876954	42876049	Intron of ERG(-): 59Kb before exon 4	Intron of TMPRSS2(-): 4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3828_c.40-59410del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2999095	NA	0	102	86	206
P-0014004-T03-IM6	SOMATIC	CDC42EP5	TNFRSF14	19	1	54979683	2494730	5-UTR of CDC42EP5(-):3Kb before coding start	3-UTR of TNFRSF14(+):7Kb after coding stop	GRCh37	TRANSLOCATION	TNFRSF14 (NM_003820) rearrangement: t(1;19)(p36.32; q13.42)(chr1:g.2494730::chr19:g.54979683)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	183	10	229
P-0014004-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876954	42876050	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3827_c.40-59410del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999096	NA	0	51	10	262
P-0014220-T02-IM6	SOMATIC	EGFR	SEPT14	7	7	55268942	55867887	Exon 25 of EGFR(+)	Intron of SEPT14(-):4Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion (EGFR exons 1-25 fused with SEPT14 exon 10): c.3008:EGFR_c.1120-4102:SEPT14inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:SEPT14}	598945	NA	0	556	0	659
P-0014254-T02-IM6	SOMATIC	ETV1	HNRNPA2B1	7	7	14026024	26232874	Intron of ETV1(-):238bp after exon 4	Exon 9 of HNRNPA2B1(-)	GRCh37	DELETION	HNRNPA2B1 (NM_031243) - ETV1 (NM_001163147) fusion (HNRNPA2B1 exons 1-9 fused to ETV1 exons 5-12) : c.997:HNRNPA2B1_c.181+239:ETV1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HNRNPA2B1:ETV1}	12206850	NA	0	4	10	2
P-0014305-T02-IM6	SOMATIC	GNAS	REST	20	4	57429127	57789330	Exon 1 of GNAS(+)	Intron of REST(+):3Kb after exon 3	GRCh37	TRANSLOCATION	GNAS (NM_080425) - REST (NM_001193508) rearrangement: t(4;20)(q12;q13.32)(chr4:g.57789330::chr20:g.57429127)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GNAS:REST}	0	NA	0	28	10	35
P-0014435-T02-IM6	SOMATIC	EPAS1	EPAS1	2	2	46607989	46609642	Intron of EPAS1(+):133bp after exon 12	Exon 15 of EPAS1(+)	GRCh37	DELETION	EPAS1 (NM_001430) rearrangement: c.2045+133_c.2366del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1653	NA	0	58	10	61
P-0014703-T02-IM6	SOMATIC	ZNF683	ARID1A	1	1	26711347	27092680	IGR: 23Kb before ZNF683(-)	Intron of ARID1A(+):31bp before exon 9	GRCh37	DELETION	ARID1A (NM_006015) Deletion : g.26711347_c.2733-32del	PRECISE		MANUAL_OK	3to5	-	381333	NA	0	10	10	11
P-0014796-T02-IM6	SOMATIC	DIS3	LINC01151	13	8	73347785	123415599	Intron of DIS3(-):36bp after exon 8	IGR: 267Kb before LINC01151(-)	GRCh37	TRANSLOCATION	DIS3 (NM_014953) rearrangement: t(8;13)(q24.13;q22.1)(chr8:g.123415599::chr13:g.73347785)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	25
P-0014872-T02-IM6	SOMATIC	NTRK3	ETV6	15	12	88548029	12028946	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12028946::chr15:g.88548029)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	102	37	139
P-0014899-T03-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11151909	11153454	Intron of SMARCA4(+):73bp before exon 30	Intron of SMARCA4(+):1Kb after exon 30	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.4171-74_c.4424+1218inv	PRECISE		MANUAL_OK	5to5	-	1545	NA	0	29	10	33
P-0014899-T03-IM6	SOMATIC	EPHA5	EPHA5	4	4	66459315	66467489	Intron of EPHA5(-):8Kb after exon 3	Exon 3 of EPHA5(-)	GRCh37	DUPLICATION	EPHA5 (NM_004439) rearrangement: c.780_c.910+8044dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8174	NA	0	17	10	19
P-0014984-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29684827	128660148	Intron of EWSR1(+): 52bp after exon 7	Intron of FLI1(+): 8Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(11,22)(q24.3;q12.2)(chr11:g.128660148::chr22:g.29684827)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	102	70	99
P-0015061-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72832169	72865550	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-): 2Kb before exon 5	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.3449-1792_c.4412inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	33381	NA	0	10	13	10
P-0015063-T02-IM6	SOMATIC	TP63	TP63	3	3	189526104	189528465	Exon 4 of TP63(+)	Intron of TP63(+): 2Kb after exon 4	GRCh37	INVERSION	TP63 (NM_003722) rearrangement: c.368_c.579+2150inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	2361	NA	0	19	49	15
P-0015078-T01-IM6	SOMATIC	KRAS	KRAS	12	12	25380191	25463932	Exon 3 of KRAS(-)	IGR: 60Kb after KRAS(-)	GRCh37	DUPLICATION	KRAS (NM_033360) rearrangement: chr12:g.25463932_c.267dup	PRECISE		MANUAL_OK	5to3	-	83741	NA	0	34	40	34
P-0015084-T01-IM6	SOMATIC	FAIM2	SMARCD1	12	12	50293887	50479828	Intron of FAIM2(-): 1Kb after exon 2	Intron of SMARCD1(+): 116bp before exon 2	GRCh37	INVERSION	FAIM2 (NM_012306) - SMARCD1 (NM_003076) rearrangement: c.211+1026:FAIM2_c.178-116:SMARCD1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (FAIM2-SMARCD1)	185941	NA	0	5	9	5
P-0015084-T01-IM6	SOMATIC	FOXA1	SSTR1	14	14	38060908	38565335	Exon 2 of FOXA1(-)	IGR: 112Kb before SSTR1(+)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1081_chr14:g.38565335del	PRECISE		MANUAL_OK	3to5	-	504427	NA	0	15	18	8
P-0015099-T01-IM6	SOMATIC	UBAC2	IRS2	13	13	99829420	110435791	IGR: 23Kb before UBAC2(+)	Exon 1 of IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: g.99829420_c.2610del	PRECISE		MANUAL_OK	3to5	-	10606371	NA	0	102	36	117
P-0015102-T01-IM6	SOMATIC	LMO3	PIK3C2G	12	12	16777242	18552462	IGR: 16Kb after LMO3(-)	Intron of PIK3C2G(+): 131bp before exon 15	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: g.16777242_c.2004-131del	PRECISE		MANUAL_OK	3to5	-	1775220	NA	0	5	10	5
P-0015107-T01-IM6	SOMATIC	LRBA	FAT1	4	4	151584863	187541892	Intron of LRBA(-): 20Kb after exon 37	Exon 10 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) Rearrangement : c.5921+19840:LRBA_c.5848:FAT1inv	PRECISE		MANUAL_OK	3to3	-	35957029	NA	0	14	34	14
P-0015108-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101858947	101894853	IGR: 8Kb before TGFBR1(+)	Exon 3 of TGFBR1(+)	GRCh37	DELETION	TGFBR1(NM_004612) Rearrangement : chr9:101858947_c.406:TGFBR1del	PRECISE		MANUAL_OK	3to5	-	35906	NA	0	20	32	20
P-0015110-T01-IM6	SOMATIC	ALK	EML4	2	2	29446518	42506264	Intron of ALK(-): 124bp before exon 20	Intron of EML4(+): 2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exons 1-5 with ALK exons 20-29) : c.668-1726:EML4_c.3173-124:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13059746	NA	0	73	39	72
P-0015116-T01-IM6	SOMATIC	ZFP42	PIK3CB	4	3	188952533	138456697	IGR: 36Kb before ZFP42(+)	Exon 4 of PIK3CB(-)	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;4)(q22.3;q35.2)(chr3:g.138456697::chr4:g.188952533)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	8	9
P-0015119-T01-IM6	SOMATIC	SDHA	IRX1	5	5	251762	3790215	Intron of SDHA(+): 179bp after exon 13	IGR: 194Kb before IRX1(+)	GRCh37	DELETION	SDHA (NM_004168) rearrangement: c.1794+179:SDHA_g.3790215del	PRECISE		MANUAL_OK	3to5	-	3538453	NA	0	13	21	13
P-0015121-T01-IM6	SOMATIC	MIR125B2	TMPRSS2	21	21	18174576	42877903	IGR: 212Kb before MIR125B2(+)	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement : g.18174576_c.55+1974:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	24703327	NA	0	97	77	93
P-0015122-T01-IM6	SOMATIC	CSF1R	GRIA1	5	5	149440476	153028099	Exon 14 of CSF1R(-)	Intron of GRIA1(+): 1Kb after exon 3	GRCh37	DUPLICATION	CSF1R (NM_005211) - GRIA1 (NM_000827) rearrangement: c.1918:CSF1R_c.460+1372:GRIA1dup	PRECISE		MANUAL_OK	5to3	Antisense fusion	3587623	NA	0	49	56	49
P-0015123-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48584851	48595255	Intron of SMAD4(+): 25bp after exon 7	Intron of SMAD4(+): 2Kb after exon 10	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.904+25_c.1308+1698del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	10404	NA	0	19	22	19
P-0015123-T01-IM6	SOMATIC	C9orf53	CDKN2A	9	9	21929130	21968244	IGR: 38Kb before C9orf53(+)	Intron of CDKN2A(-): 3bp before exon 3	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement : g.21929130_c.458-3:CDKN2Ap16iNK4Ainv	PRECISE		MANUAL_OK	3to3	-	39114	NA	0	8	12	8
P-0015124-T01-IM6	SOMATIC	ARID1B	QKI	6	6	157496051	164320720	Intron of ARID1B(+): 800bp after exon 11	IGR: 485Kb before QKI(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement : c.2961+800:ARID1B_g.164320720inv	PRECISE		MANUAL_OK	3to3	-	6824669	NA	0	32	59	32
P-0015129-T01-IM6	SOMATIC	RXRA	RXRA	9	9	137324830	137326085	Intron of RXRA(+): 988bp after exon 8	Intron of RXRA(+): 32bp after exon 9	GRCh37	INVERSION	RXRA (NM_002957) rearrangement : c.1135+988_c.1241+32inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	1255	NA	0	5	4	4
P-0015131-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39870460	42868045	Intron of ERG(-): 53Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 3	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-52916:ERG_c.127-1540:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2997585	NA	0	11	21	11
P-0015132-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874000	42867130	Intron of ERG(-): 56Kb before exon 4	Intron of TMPRSS2(-): 625bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-11):c.127-625:TMPRSS2_c.40-56456:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2993130	NA	0	9	26	9
P-0015136-T01-IM6	SOMATIC	CDKN1B	DAZAP2	12	12	12870931	51623301	Exon 1 of CDKN1B(+)	IGR: 9Kb before DAZAP2(+)	GRCh37	INVERSION	CDKN1B (NM_004064) Rearrangement : c.158:CDKN1B_chr12:5g.1623301inv	PRECISE		MANUAL_OK	5to5	-	38752370	NA	0	7	8	7
P-0015148-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18716243	18738792	Intron of PIK3C2G(+): 68bp before exon 27	Intron of PIK3C2G(+): 9Kb before exon 29	GRCh37	DUPLICATION	PIK3C2G (M_004570) rearrangement: c.3658-68_c.3889-8636dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	22549	NA	0	23	28	23
P-0015152-T02-IM6	SOMATIC	ALK	EML4	2	2	29447079	42552821	Intron of ALK(-): 685bp before exon 20	Intron of EML4(+): 127bp after exon 19	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused in-frame to ALK exons 20-29): c.2242+127:EML4_c.3173-685:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13105742	NA	0	36	100	36
P-0015179-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268650	55869041	Intron of EGFR(+): 231bp before exon 25	Intron of SEPT14(-): 4Kb after exon 9	GRCh37	INVERSION	EGFR (NM_002529) - SEPT14 (NM_014857) fusion (EGFR exons 1-24 fused with SEPT14 exon 10): c.2947-231:EGFR_c.1119+3910:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EGFR-SEPT14)	600391	NA	0	102	265	1643
P-0015184-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	145741838	145742407	Exon 5 of RECQL4(-)	Intron of RECQL4(-): 27bp after exon 4	GRCh37	DUPLICATION	RECQL4 (NM_004260) rearrangement: c.665_c.354+27dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	569	NA	0	27	70	27
P-0015188-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11917254	12030942	Intron of ETV6(+): 12Kb after exon 2	Intron of ETV6(+): 6Kb before exon 6	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.163+11741_c.1010-6437dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: in frame	113688	NA	0	43	51	42
P-0015191-T01-IM6	SOMATIC	C1orf52	BCL10	1	1	85724810	85733565	Intron of C1orf52(-): 231bp after exon 1	Exon 3 of BCL10(-)	GRCh37	INVERSION	BCL10 (NM_003921) - C1orf52 (NM_198077) rearrangement: c.447:BCL10_c.276+231:C1orf52inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	8755	NA	0	7	12	7
P-0015192-T01-IM6	SOMATIC	MLL	MLL	11	11	118294747	118307513	IGR: 12Kb before MLL(+)	Exon 1 of MLL(+)	GRCh37	DUPLICATION	MLL (NM_001197104) rearrangement: c.286_chr11:g.118294747dup	PRECISE		MANUAL_OK	5to3	-	12766	NA	0	5	10	5
P-0015194-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55186259	55222836	Intron of EGFR(+): 24Kb before exon 2	Intron of EGFR(+): 687bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-23720_c.890-687	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	36577	NA	0	6	14	6
P-0015195-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737430	1808757	Intron of TACC3(+): 28bp before exon 8	Intron of FGFR3(+): 86bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exon17 fused to TACC3 exon8): c.2275-86:FGFR3_c.1645-28:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	71327	NA	0	32	25	31
P-0015196-T01-IM6	SOMATIC	NTRK3	ALLC	15	2	88423420	4144089	Intron of NTRK3(-): 81bp after exon 17	IGR: 438Kb before ALLC(+)	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(2;15)(p25.3;q25.3)(chr2:g.4144089::chr15:g.88423420)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	19	6	19
P-0015196-T01-IM6	SOMATIC	STAT3	MIR1973	17	4	40469189	116733547	Intron of STAT3(-): 11bp after exon 22	IGR: 487Kb before MIR1973(+)	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(4;7)(q26;q21.2)(chr4:g.116733547::chr17:g.40469189)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	15	20	12
P-0015196-T01-IM6	SOMATIC	UNC5D	FGFR1	8	8	34596848	38271425	IGR: 496Kb before UNC5D(+)	Intron of FGFR1(-): 11bp after exon 16	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: chr8:g.34596848_c.2385+11del	PRECISE		MANUAL_OK	3to5	-	3674577	NA	0	20	32	20
P-0015197-T01-IM6	SOMATIC	ALK	EML4	2	2	29448009	42505882	Intron of ALK(-): 318bp after exon 19	Intron of EML4(+): 2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon 6 fused to ALK exon 20) : c.668-2108:EML4_c.3172+318:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13057873	NA	0	49	74	49
P-0015199-T01-IM6	SOMATIC	NF2	NF2	22	22	30070750	30071888	Intron of NF2(+): 75bp before exon 13	Intron of NF2(+): 958bp after exon 13	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.1341-75_c.1446+958inv	IMPRECISE		MANUAL_OK	5to5	-	1138	NA	0	102	0	98
P-0015204-T01-IM6	SOMATIC	STAT5A	STAT3	17	17	40460286	40466320	Exon 17 of STAT5A(+)	3-UTR of STAT3(-): 1Kb after coding stop	GRCh37	DELETION	STAT5A (NM_003152) - STAT3 (NM_139276) rearrangement: c.1997:STAT5A_c.*1443:STAT3del	PRECISE		MANUAL_OK	3to5	-	6034	NA	0	9	8	9
P-0015204-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157508630	157522644	Intron of ARID1B(+): 2Kb before exon 14	Intron of ARID1B(+): 22bp after exon 18	GRCh37	DUPLICATION	ARID1B (NM_020732) rearrangement: c.3377-2146_c.4720+22	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: in frame	14014	NA	0	55	46	54
P-0015209-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857197	42877685	Intron of ERG(-): 13Kb after exon 1	Intron of TMPRSS2(-): 2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 fused to ERG exon2): c.55+2192:TMPRSS2_c.18+13090:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3020488	NA	0	55	58	54
P-0015215-T01-IM6	SOMATIC	NPW	TSC2	16	16	2066768	2110796	Promoter of NPW(+): 3Kb from tx start	Exon 11 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) - NPW (NM_001099456) rearrangement: c.1101:TSC2_c.-3135:NPWdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (TSC2-NPW)	44028	NA	0	39	65	38
P-0015215-T01-IM6	SOMATIC	ROS1	CD74	6	5	117650370	149783057	Intron of ROS1(-): 122bp after exon 32	Intron of CD74(-): 182bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 32-43): t(5;6)(q32;q22.1)(chr5:g.149783057::chr6:g.117650370)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (CD74-ROS1)	0	NA	0	38	23	37
P-0015219-T01-IM6	SOMATIC	RFX1	MLL4	19	19	14088444	36221797	Intron of RFX1(-): 360bp after exon 8	Intron of MLL4(+): 29bp after exon 26	GRCh37	INVERSION	MLL4 (NM_014727) - RFX1 (NM_002918) rearrangement: c.929+360:MLL4_c.5437+29:RFX1inv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (MLL4-RFX1)	22133353	NA	0	11	19	8
P-0015230-T01-IM6	SOMATIC	NF1	ACCN1	17	17	29677310	31973834	Exon 49 of NF1(+)	Intron of ACCN1(-): 509Kb after exon 1	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7431:NF1_chr17:g.31973834del	PRECISE		MANUAL_OK	3to5	Antisense fusion	2296524	NA	0	8	13	8
P-0015239-T01-IM6	SOMATIC	TULP4	PIK3R1	6	5	158681004	67591907	IGR: 53Kb before TULP4(+)	Intron of PIK3R1(+): 92bp before exon 9	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: (5;6)(q13.1;q25.3)(chr5:g.67591907::chr6:g.158681004)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	3	6
P-0015240-T01-IM6	SOMATIC	PLCG2	EIF4G1	16	3	81968167	184034134	Intron of PLCG2(+): 31bp after exon 26	Intron of EIF4G1(+): 128bp after exon 4	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) rearrangement: t(3;16)(q27.1;q23.3)(chr3:g.184034134::chr16:g.81968167)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (PLCG2-EIF4G1)	0	NA	0	27	21	27
P-0015244-T01-IM6	SOMATIC	CPT1A	APC	11	5	68605475	112043596	5-UTR of CPT1A(-): 23Kb before coding start	5-UTR of APC(+): 47Kb before coding start	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;11)(q22.2;q13.3)(chr5:g.112043596::chr11:g.68605475)	IMPRECISE		MANUAL_OK	5to3	Antisense fusion	0	NA	0	26	0	26
P-0015244-T01-IM6	SOMATIC	SMAD3	FBXW7	15	4	67479765	153290194	Exon 8 of SMAD3(+)	Intron of FBXW7(-): 13Kb after exon 1	GRCh37	TRANSLOCATION	FBXW7 (NM_033632) - SMAD3 (NM_005902) rearrangement: t(4;15)(q31.3;q22.33)(chr4:g.153290194::chr15:g.67479765)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (FBXW7-SMAD3)	0	NA	0	8	17	8
P-0015247-T01-IM6	SOMATIC	C6orf10	RRAGC	6	1	32326074	39321642	Intron of C6orf10(-): 3Kb before exon 7	Intron of RRAGC(-): 63bp before exon 3	GRCh37	TRANSLOCATION	C6orf10 (NM_006781) - RRAGC (NM_022157) rearrangement: t(1;6) (p34.3;p21.32)(chr1:g.39321642::chr6:g.32326074)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (C6orf10-RRAGC)	0	NA	0	68	0	60
P-0015247-T01-IM6	SOMATIC	AIG1	PRKCI	6	3	143429861	169940345	Intron of AIG1(+): 28Kb before exon 2	5-UTR of PRKCI(+): 113bp before coding start	GRCh37	TRANSLOCATION	PRKCI (NM_002740) rearrangement: t(3;6)(q26.2;q24.2)(chr3:g.169940345::chr6:g.143429861)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	17	7	15
P-0015249-T01-IM6	SOMATIC	TP53	MRC2	17	17	7578099	60727569	Intron of TP53(-): 78bp after exon 6	Intron of MRC2(+): 14Kb before exon 2	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.672+78:TP53_c.119-14340:MRC2dup	PRECISE		MANUAL_OK	5to3	Antisense fusion	53149470	NA	0	99	51	92
P-0015250-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39837892	42874426	Intron of ERG(-): 20Kb before exon 4	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.56-4310:TMPRSS2_c.19-20348:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3036534	NA	0	53	71	53
P-0015268-T01-IM6	SOMATIC	NIF3L1	CASP8	2	2	201756219	202139688	5-UTR of NIF3L1(+): 448bp before coding start	Intron of CASP8(+): 12bp after exon 7	GRCh37	DUPLICATION	CASP8 (NM_001080125) - NIF3L1 (NM_001136039) Rearrangement : c.837+12:CASP8_c.-26-422:NIF3L1dup	PRECISE		MANUAL_OK	5to3	Transcript fusion (CASP8-NIF3L1)	383469	NA	0	33	48	32
P-0015283-T01-IM6	SOMATIC	NF1	NF1	17	17	29521900	29587438	Intron of NF1(+): 6Kb before exon 9	Exon 33 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement : c.889-5540_c.4482dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	65538	NA	0	14	26	14
P-0015291-T01-IM6	SOMATIC	RARA	SMURF2	17	17	38499226	62585108	Intron of RARA(+): 107bp after exon 1	Intron of SMURF2(-): 2Kb after exon 5	GRCh37	INVERSION	RARA (NM_000964) - SMURF2 (NM_022739) rearrangement: c.179-5342:RARA_c.400+2094:SMURF2inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (RARA-SMURF2)	24085882	NA	0	55	47	50
P-0015294-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35872104	35888329	Intron of NFKBIA(-): 39bp before exon 4	IGR: 18Kb before NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.548-39_chr14:g.35888329del	PRECISE		MANUAL_OK	3to5	-	16225	NA	0	16	3	14
P-0015300-T01-IM6	SOMATIC	MLL3	MLL3	7	7	151878425	151915807	Exon 36 of MLL3(-)	Intron of MLL3(-): 2Kb after exon 23	GRCh37	DELETION	MLL3 (NM_170606) rearrangement: c.3712+1801_c.6520del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	37382	NA	0	8	25	5
P-0015300-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151878425	151915808	Exon 36 of KMT2C(-)	Intron of KMT2C(-):2Kb after exon 23	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.3712+1800_c.6520del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37383	NA	0	4	10	5
P-0015301-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123194178	123200138	Intron of STAG2(+): 896bp before exon 15	Intron of STAG2(+): 26bp after exon 21	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1417-896_c.2184+26del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: in frame	5960	NA	0	12	15	11
P-0015302-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37619133	37627038	Exon 1 of CDK12(+)	Intron of CDK12(+): 94bp before exon 2	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.809_c.1047-94del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7905	NA	0	62	72	60
P-0015310-T02-IM6	SOMATIC	RET	RUFY3	10	4	43610427	71655316	Intron of RET(+): 243bp after exon 11	Intron of RUFY3(+): 7bp after exon 12	GRCh37	TRANSLOCATION	RUFY3 (NM_001037442) - RET (NM_020975) rearrangement: t(4;10)(q13.3;q11.21)(chr4:g.71655316::chr10:g.43610427)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (RUFY3-RET)	0	NA	0	49	0	42
P-0015321-T01-IM6	SOMATIC	SLC7A1	IRS2	13	13	30177124	110414431	IGR: 7Kb after SLC7A1(-)	Intron of IRS2(-): 6Kb before exon 2	GRCh37	INVERSION	IRS2 (NM_003749) rearrangement: chr13:g.30177124_c.4013-5776inv	PRECISE		MANUAL_OK	5to5	-	80237307	NA	0	9	21	9
P-0015321-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2BAS	9	9	21971157	22157561	Exon 2 of CDKN2Ap14ARF(-)	IGR: 36Kb after CDKN2BAS(+)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.244:CDKN2Ap14ARF_chr9:g.22157561del	PRECISE		MANUAL_OK	3to5	-	186404	NA	NA	7	11	NA
P-0015321-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2BAS	9	9	21971157	22157561	Exon 2 of CDKN2Ap16INK4(-)	IGR: 36Kb after CDKN2BAS(+)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.201:CDKN2Ap16INK4A_chr9:g.22157561del	PRECISE		MANUAL_OK	3to5	-	186404	NA	NA	7	11	NA
P-0015331-T01-IM6	SOMATIC	POLA2	MLL	11	11	65037554	118344996	Intron of POLA2(+): 1Kb after exon 4	Exon 3 of MLL(+)	GRCh37	INVERSION	MLL (NM_001197104) rearrangement: chr11:g.65037554_c.3122:MLLinv	PRECISE		MANUAL_OK	5to5	-	53307442	NA	0	15	27	13
P-0015333-T01-IM6	SOMATIC	TMPRSS2	RND3	21	2	42870305	151050245	Intron of TMPRSS2(-): 189bp before exon 2	IGR: 274Kb before RND3(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(2;21)(q23.3;q22.3)(chr2:g.151050245::chr21:g.42870305)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	28	17	26
P-0015333-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42849755	42870327	Intron of TMPRSS2(-): 1Kb before exon 8	Intron of TMPRSS2(-): 211bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-211_c.795-1208del	PRECISE		MANUAL_OK	5to5	Antisense fusion	20572	NA	0	19	25	19
P-0015337-T01-IM6	SOMATIC	POLE	ZNF268	12	12	133253264	133806491	Intron of POLE(-): 25bp before exon 9	IGR: 48Kb before ZNF268(+)	GRCh37	DELETION	POLE (NM_006231) Rearrangement : chr12:g.133806491_c.802-25:POLEdel	PRECISE		MANUAL_OK	3to5	-	553227	NA	0	7	8	7
P-0015337-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11080127	11095141	5-UTR of SMARCA4(+): 15Kb before coding start	Intron of SMARCA4(+): 92bp after exon 1	GRCh37	INVERSION	SMARCA4 (NM_003072) Rearrangement : c.-32+8277_c.222+92del	PRECISE		MANUAL_OK	3to3	Antisense fusion	15014	NA	0	60	83	59
P-0015345-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140487688	140604398	Intron of BRAF(-): 304bp before exon 9	Intron of BRAF(-): 20Kb after exon 1	GRCh37	DELETION	BRAF (NM_004333) Rearrangement : c.138+19968_c.1141-304del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: in frame	116710	NA	0	102	116	197
P-0015353-T01-IM6	SOMATIC	EWSR1	CCDC157	22	22	29690115	30767431	Intron of EWSR1(+): 2Kb after exon 10	Intron of CCDC157(+): 208bp before exon 6	GRCh37	DUPLICATION	EWSR1 (NM_013986) - CCDC157 (NM_001017437) rearrangement: c.945+1520_c.1046-208dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (CCDC157-EWSR1)	1077316	NA	0	39	36	39
P-0015357-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76856109	76922985	Intron of ATRX(-): 76bp before exon 23	Intron of ATRX(-): 3Kb before exon 11	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.5567-76_c.3810-2718del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons: out of frame	66876	NA	0	16	16	15
P-0015358-T01-IM6	SOMATIC	WDR88	EIF2C2	19	8	33663503	141566378	Intron of WDR88(+): 157bp after exon 10	Exon 9 of EIF2C2(-)	GRCh37	TRANSLOCATION	AGO2 (NM_012154) rearrangement: t(8;19)(q24.3;q13.11)(chr8:g.141566378::chr19:g.33663503)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	32	0	30
P-0015360-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12003177	12009664	Intron of ETV6(+): 3Kb before exon 4	Intron of ETV6(+): 3Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.329-3184_c.463+3169dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon: in frame	6487	NA	0	4	5	4
P-0015360-T02-IM6	SOMATIC	ETV6	ETV6	12	12	12003178	12009664	Intron of ETV6(+):3Kb before exon 4	Intron of ETV6(+):3Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.329-3183_c.463+3169dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	6486	NA	0	9	10	9
P-0015369-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55151971	55222319	Intron of EGFR(+): 58Kb before exon 2	Intron of EGFR(+): 474bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.89-58008_c.889+474del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	70348	NA	0	101	222	1162
P-0015372-T01-IM6	SOMATIC	MTOR	CAPZB	1	1	11301659	19770789	Exon 10 of MTOR(-)	Intron of CAPZB(-): 25Kb before exon 2	GRCh37	DELETION	CAPZB (NM_001206540) -MTOR (NM_004958) rearrangement: c.1492:MTOR_c.4-24545:CAPZBdel	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (CAPZB-MTOR)	8469130	NA	0	20	42	20
P-0015378-T01-IM6	SOMATIC	PAK7	PAK7	20	20	9546869	9631773	Exon 6 of PAK7(-)	5-UTR of PAK7(-): 7Kb before coding start	GRCh37	DELETION	PAK7 (NM_177990) rearrangement: c.1153_c.-11-6786del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	84904	NA	0	34	39	29
P-0015393-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89352451	89455616	Exon 8 of ANKRD11(-)	5-UTR of ANKRD11(-): 72Kb before coding start	GRCh37	INVERSION	ANKRD11 (NM_013275) rearrangement: c.888_c.-60+29076del	PRECISE		MANUAL_OK	5to5	Antisense fusion	103165	NA	0	31	88	31
P-0015411-T01-IM6	SOMATIC	MAFB	PTPRT	20	20	39318393	41100912	Promoter of MAFB(-): 517bp from tx start	Exon 8 of PTPRT(-)	GRCh37	INVERSION	PTPRT (NM_133170) Rearrangement : c.1444:PTPRT_c.-903:MAFBinv	PRECISE		MANUAL_OK	5to5	Antisense fusion	1782519	NA	0	8	21	8
P-0015412-T01-IM6	SOMATIC	BRD4	PCLO	19	7	15367862	82248433	Exon 8 of BRD4(-)	IGR: 135Kb before PCLO(-)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) Rearrangement : t(7;19)(q21.11;p13.12)(chr7:g.82248433::chr19:g.15367862)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	22	28
P-0015414-T01-IM6	SOMATIC	PKD1	TRAF7	16	16	2158585	2225258	Exon 15 of PKD1(-)	Intron of TRAF7(+): 44bp before exon 16	GRCh37	DUPLICATION	TRAF7 (NM_032271) Rearrangement : c.6583:PKD1_c.1387-44:TRAF7dup	PRECISE		MANUAL_OK	5to3	Antisense fusion	66673	NA	0	9	13	7
P-0015418-T01-IM6	SOMATIC	RNF214	MLL	11	11	117139482	118352729	Intron of RNF214(+): 11Kb before exon 7	Exon 7 of MLL(+)	GRCh37	DUPLICATION	MLL (NM_001197104) - RNF214 (NM_207343) Rearrangement : c.3934:MLL_c.960-11142:RNF214dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MLL-RNF214)	1213247	NA	0	10	18	10
P-0015419-T01-IM6	SOMATIC	GATA3	SLC16A4	10	1	8111513	110921917	Exon 5 of GATA3(+)	Exon 6 of SLC16A4(-)	GRCh37	TRANSLOCATION	GATA3 (NM_002051) Rearrangement : t(1;10)(p13.3;p14)(chr1:g.110921917::chr10:g.8111513)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	13	0	13
P-0015419-T01-IM6	SOMATIC	PRKG1	PRKG1	10	10	52776941	52834634	Intron of PRKG1(+): 26Kb after exon 1	Exon 1 of PRKG1(+)	GRCh37	DELETION	PRKG1 (NM_001098512) Rearrangement : c.267-78290_c.266+25537del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	57693	NA	0	9	15	8
P-0015419-T01-IM6	SOMATIC	VPS41	EGFR	7	7	38874850	55268890	Intron of VPS41(-): 5Kb before exon 5	Exon 25 of EGFR(+)	GRCh37	INVERSION	EGFR (NM_005228)- VPS41 (NM_014396) Rearrangement : c.2956:EGFR_c.247-4922:VPS41inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EGFR-VPS41)	16394040	NA	0	67	62	64
P-0015419-T01-IM6	SOMATIC	LYN	SNTB1	8	8	56879500	121776993	Intron of LYN(+): 44bp after exon 9	Intron of SNTB1(-): 47Kb after exon 1	GRCh37	DELETION	LYN (NM_002350) Rearrangement : c.973+44:LYN_c.571+46520:SNTB1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	64897493	NA	0	67	65	67
P-0015419-T01-IM6	SOMATIC	CDKN2Ap14ARF	RAB4A	9	1	21971319	229411176	Intron of CDKN2Ap14ARF(-) before exon 2	Intron of RAB4A(+): 4Kb after exon 1	GRCh37	TRANSLOCATION	CDKN2Ap14ARF (NM_058195) Rearrangement : t(1,9)(q42.13,p21.3)(chr1:g.229411176::chr9:g.21971319)	PRECISE		MANUAL_OK	3to5	-	0	NA	NA	12	8	NA
P-0015419-T01-IM6	SOMATIC	CDKN2Ap16INK4A	RAB4A	9	1	21971319	229411176	Intron of CDKN2Ap16INK4(-) before exon 2	Intron of RAB4A(+): 4Kb after exon 1	GRCh37	TRANSLOCATION	CDKN2Ap16INK4A (NM_000077) Rearrangement : t(1,9)(q42.13,p21.3)(chr1:g.229411176::chr9:g.21971319)	PRECISE		MANUAL_OK	3to5	-	0	NA	NA	12	8	NA
P-0015423-T01-IM6	SOMATIC	ROS1	GOPC	6	6	117642479	117902202	Exon 35 of ROS1(-)	Intron of GOPC(-): 2Kb before exon 2	GRCh37	INVERSION	GOPC (NM_020399) - ROS1 (NM_002944) Rearrangement : c.286-1975:GOPC_c.5720:ROS1inv	PRECISE		MANUAL_OK	3to3	-	259723	NA	0	77	60	72
P-0015426-T02-IM6	SOMATIC	AKT1	C11orf59	14	11	105242114	71813090	Exon 5 of AKT1(-)	Intron of C11orf59(-): 1Kb after exon 1	GRCh37	TRANSLOCATION	LAMTOR1 (NM_017907) - AKT1 (NM_001014431) Rearrangement : t(11,14)(q13.4,q32.33)(chr11:g.71813090::chr14:g.105242114)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (C11orf59-AKT1)	0	NA	0	39	37	39
P-0015426-T03-IM6	SOMATIC	AKT1	C11orf59	14	11	105242114	71813090	Exon 5 of AKT1(-)	Intron of C11orf59(-): 1Kb after exon 1	GRCh37	TRANSLOCATION	LAMTOR1 (NM_017907) - AKT1 (NM_001014431) Rearrangement : t(11,14)(q13.4,q32.33)(chr11:g.71813090::chr14:g.105242114)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (C11orf59-AKT1)	0	NA	0	102	49	106
P-0015426-T04-IM6	SOMATIC	AKT1	C11orf59	14	11	105242114	71813090	Exon 5 of AKT1(-)	Intron of C11orf59(-): 1Kb after exon 1	GRCh37	TRANSLOCATION	LAMTOR1 (NM_017907) - AKT1 (NM_001014431) Rearrangement : t(11,14)(q13.4,q32.33)(chr11:g.71813090::chr14:g.105242114)	PRECISE		MANUAL_OK	3to5	-	0	NA	NA	60	10	NA
P-0015430-T01-IM6	SOMATIC	EIF2C3	STK40	1	1	36513716	36809735	Intron of EIF2C3(+): 5Kb after exon 15	Exon 9 of STK40(-)	GRCh37	DUPLICATION	EIF2C3 (NM_024852) - STK40 (NM_032017) rearrangement:  c.2274+4567:EIF2C3_c.870:STK40dup	PRECISE		MANUAL_OK	5to3	-	296019	NA	0	21	21	19
P-0015430-T01-IM6	SOMATIC	VTCN1	MAN1A2	1	1	117695897	117841527	Exon 4 of VTCN1(-)	IGR: 69Kb before MAN1A2(+)	GRCh37	DUPLICATION	VTCN1 (NM_024626) rearrangement: c.540_chr1:g.117841527dup	PRECISE		MANUAL_OK	5to3	-	145630	NA	0	41	35	40
P-0015430-T01-IM6	SOMATIC	MGA	DPP7	15	9	42058234	140014961	Exon 23 of MGA(+)	IGR: 6Kb after DPP7(-)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(9;15)(q34.3;q15.1)(chr9:g.140014961::chr15:g.42058234)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	102	0	97
P-0015430-T01-IM6	SOMATIC	KEAP1	STAT5B	19	17	10615471	40354329	Promoter of KEAP1(-): 1Kb from tx start	Intron of STAT5B(-): 29bp after exon 18	GRCh37	TRANSLOCATION	STAT5B (NM_012448) - KEAP1 (NM_203500) rearrangement: t(17;19)(q21.2;p13.2)(chr17:g.:40354329::chr19:g.10615471)	PRECISE		MANUAL_OK	3to5	Transcript fusion (STAT5B-KEAP1)	0	NA	0	77	20	63
P-0015432-T01-IM6	SOMATIC	CAT	FGFR2	11	10	34467980	123242534	Intron of CAT(+): 3Kb before exon 2	Intron of FGFR2(-): 678bp after exon 16	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - CAT (NM_001752) rearrangement: t(10;11)(q26.13;p13)(chr10:g.123242534::chr11:g.34467980)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-CAT)	0	NA	0	5	2	5
P-0015440-T01-IM6	SOMATIC	MSI1	LOC338799	12	12	120794875	122241038	Intron of MSI1(-): 53bp before exon 9	3-UTR of LOC338799(-): 353bp after coding stop	GRCh37	DELETION	MSI1 (NM_002442) rearrangement: chr12:g.122241038_c.535-53del	PRECISE		MANUAL_OK	3to5	-	1446163	NA	0	15	19	15
P-0015441-T01-IM6	SOMATIC	EP300	WBP2NL	22	22	41545943	42410129	Exon 14 of EP300(+)	Intron of WBP2NL(+): 5Kb before exon 2	GRCh37	DUPLICATION	WBP2NL (NM_152613) -  EP300 (NM_001429) rearrangement: c.63-5186:WBP2NL_c.2558:EP300dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (WBP2NL-EP300)	864186	NA	0	40	55	38
P-0015445-T01-IM6	SOMATIC	MYD88	ROBO2	3	3	38181690	77692981	Intron of MYD88(+): 189bp before exon 3	Intron of ROBO2(+): 874bp before exon 25	GRCh37	DELETION	MYD88 (NM_002468) - ROBO2 (NM_002942) rearrangement: c.503-189:MYD88_c.3935-874:ROBO2del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (MYD88-ROBO2)	39511291	NA	0	6	5	4
P-0015452-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39835568	42868650	Intron of ERG(-): 18Kb before exon 4	Intron of TMPRSS2(-): 1Kb after exon 2	GRCh37	INVERSION	ERG (NM_182918) -TMPRSS2 (NM_001135099) rearrangement: c.19-18024:ERG_c.126+1396:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3033082	NA	1	5	12	4
P-0015455-T01-IM6	SOMATIC	EGFR	EGFR	7	7	54980805	55222777	IGR: 106Kb before EGFR(+)	Intron of EGFR(+): 746bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: chr7:g.54980805_c.890-746:EGFRinv	PRECISE		MANUAL_OK	5to5	-	241972	NA	0	102	271	284
P-0015457-T01-IM6	SOMATIC	CREBBP	RIMBP2	16	12	3779580	130928970	Exon 31 of CREBBP(-)	Intron of RIMBP2(-): 735bp after exon 7	GRCh37	TRANSLOCATION	RIMBP2 (NM_015347) - CREBBP (NM_004380) rearrangement: t(12;16)(q24.33;p13.3)(chr12:g.130928970::chr16:g.3779580)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RIMBP2-CREBBP)	0	NA	0	49	69	48
P-0015471-T01-IM6	SOMATIC	LZTS1	RAF1	8	3	20111180	12641856	Intron of LZTS1(-): 84bp before exon 2	Intron of RAF1(-): 31bp after exon 8	GRCh37	TRANSLOCATION	LZTS1 (NM_021020) - RAF1 (NM_002880) rearrangement: t(3;8)(p25.2;p21.3)(chr3:g.12641856::chr8:g.20111180)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (LZTS1-RAF1)	0	NA	0	48	0	45
P-0015476-T01-IM6	SOMATIC	BTBD12	EIF2C2	16	8	3654062	141595171	Intron of BTBD12(-): 2Kb before exon 4	Intron of EIF2C2(-): 47bp after exon 2	GRCh37	TRANSLOCATION	AGO2 (NM_012154)  - SLX4 (NM_032444) rearrangement: t(8;16)(q24.3;p13.3)(chr8:g.141595171::chr16:g.3654062)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EIF2C2-BTBD12)	0	NA	0	21	11	18
P-0015476-T01-IM6	SOMATIC	NCOA1	DNMT3A	2	2	24788000	25470517	IGR: 19Kb before NCOA1(+)	Exon 8 of DNMT3A(-)	GRCh37	DUPLICATION	DNMT3A (NM_022552) rearrangement: c.957_chr2:g.24788000dup	PRECISE		MANUAL_OK	5to3	-	682517	NA	0	70	87	69
P-0015479-T01-IM6	SOMATIC	TP53	TEX2	17	17	7576610	62224960	Intron of TP53(-): 26bp before exon 6	3-UTR of TEX2(-): 1Kb after coding stop	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+243_chr17:g.62224960inv	PRECISE		MANUAL_OK	3to3	-	54648350	NA	0	7	9	7
P-0015482-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858572	42871231	Intron of ERG(-): 12Kb after exon 1	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon1 fused to ERG exon 2): c.56-1115:TMPRSS2_c.18+11715:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3012659	NA	0	12	31	12
P-0015494-T01-IM6	SOMATIC	IGF1R	ROS1	15	6	99477638	117646453	Intron of IGF1R(+): 415bp before exon 16	Intron of ROS1(-): 875bp before exon 34	GRCh37	TRANSLOCATION	IGF1R (NM_000875) - ROS1 (NM_002944) Rearrangement : t(6,15)(q22.1,q26.3)(chr6:g.117646453::chr15:g.99477638)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (IGF1R-ROS1)	0	NA	0	102	53	312
P-0015500-T01-IM6	SOMATIC	FGFR2	PALLD	10	4	123239869	169605121	Intron of FGFR2(-): 334bp before exon 18	Intron of PALLD(+): 867bp after exon 5	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - PALLD (NM_001166108) Rearrangement : t(4,10)(q33,q26.13)(chr4:g.169605121::chr10:g.123239869)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-PALLD)	0	NA	0	19	20	19
P-0015510-T01-IM6	SOMATIC	CYLD	IRX3	16	16	50783857	54625586	Exon 4 of CYLD(+)	IGR: 308Kb before IRX3(-)	GRCh37	DELETION	CYLD (NM_001042355) Rearrangement : c.248:CYLD_chr16:g.54625586del	PRECISE		MANUAL_OK	3to5	-	3841729	NA	0	31	31	28
P-0015515-T01-IM6	SOMATIC	PLCG2	CTTNBP2	16	7	81941447	117398640	Intron of PLCG2(+): 68bp after exon 16	Intron of CTTNBP2(-): 616bp before exon 11	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) - CTTNBP2 (NM_033427) Rearrangement : t(7,16)(q31.2,q23.3)(chr7:g.117398640::chr16:g.81941447)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (PLCG2-CTTNBP2)	0	NA	0	5	6	5
P-0015517-T01-IM6	SOMATIC	MTOR	DNAJC16	1	1	11188041	15871521	Intron of MTOR(-): 20bp after exon 43	Intron of DNAJC16(+): 443bp after exon 5	GRCh37	DUPLICATION	MTOR (NM_004958) Rearrangement : c.6033+20:MTOR_c.759+443:DNAJC16inv	PRECISE		MANUAL_OK	5to3	Antisense fusion	4683480	NA	0	7	8	7
P-0015517-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685072	128653928	Intron of EWSR1(+): 297bp after exon 7	Intron of FLI1(+): 2Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 6-9) : t(11;22)(11q24.3;22q12.2)(chr11:g.29685072::chr22:g.29685072)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	102	50	112
P-0015518-T01-IM6	SOMATIC	LOC150568	NOTCH2	2	1	104768940	120510213	IGR: 282Kb before LOC150568(+)	Exon 8 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) Rearrangement : t(1,2)(p11.2,q12.1)(chr1:g.120510213::chr2:g.104768940)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	44	18	43
P-0015527-T01-IM6	SOMATIC	ETV6	ATF7IP	12	12	12030378	14401894	Intron of ETV6(+): 7Kb before exon 6	IGR: 117Kb before ATF7IP(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-7001_g.14401894del	PRECISE		MANUAL_OK	3to5	-	2371516	NA	0	102	89	91
P-0015531-T01-IM6	SOMATIC	PLCH2	TNFRSF14	1	1	2430635	2488204	Exon 19 of PLCH2(+)	Intron of TNFRSF14(+): 32bp after exon 1	GRCh37	DUPLICATION	TNFRSF14 (NM_003820) - PLCH2 (NM_014638)  rearrangement: c.2547:PLCH2_c.69+32:TNFRSF14dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (TNFRSF14-PLCH2)	57569	NA	0	74	49	72
P-0015537-T01-IM6	SOMATIC	MLL3	MLL3	7	7	151899995	151948483	Intron of MLL3(-): 24bp after exon 26	Intron of MLL3(-): 432bp before exon 12	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.4092+24_c.1622-432dup	PRECISE		MANUAL_OK	5to3	Duplication of 15 exons: out of frame	48488	NA	0	23	24	23
P-0015540-T01-IM6	SOMATIC	RB1	ARL11	13	13	48942744	50206305	Intron of RB1(+): 4bp after exon 11	3-UTR of ARL11(+): 1Kb after coding stop	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1127+4_g.50206305inv	PRECISE		MANUAL_OK	3to3	-	1263561	NA	0	30	34	30
P-0015540-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138546271	140489119	Intron of KIAA1549(-): 69bp before exon 16	Intron of BRAF(-): 2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-15 fused in frame with BRAF exons 9-18, which include the BRAF kinase domain): c.4930-69:KIAA1549_c.1141-1735:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1942848	NA	0	8	24	8
P-0015557-T01-IM6	SOMATIC	AKT1	CDCA4	14	14	105240285	105469678	Exon 8 of AKT1(-)	IGR: 6Kb before CDCA4(-)	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: c.666:AKT1_chr14:g.105469678del	PRECISE		MANUAL_OK	3to5	-	229393	NA	0	26	40	25
P-0015558-T01-IM6	SOMATIC	SPATA8	ETV6	15	12	97567900	12019771	IGR: 241Kb before SPATA8(+)	Intron of ETV6(+): 3Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.2)(chr12:g.12019771::chr15:g.97567900)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	29	0	25
P-0015561-T01-IM6	SOMATIC	ETV6	LOC339535	12	1	12032627	238992569	Intron of ETV6(+): 5Kb before exon 6	IGR: 349Kb before LOC339535(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(1;12)(q43;p13.2)(chr1:g.238992569::chr12:g.12032627)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	40	33	37
P-0015572-T01-IM6	SOMATIC	MAP2K4	FASN	17	17	12032518	80042668	Exon 9 of MAP2K4(+)	Intron of FASN(-): 7bp after exon 26	GRCh37	INVERSION	MAP2K4 (NM_003010) - FASN (NM_004104) rearrangement: c.954:MAP2K4_c.4564+7:FASNinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MAP2K4-FASN)	68010150	NA	0	8	18	7
P-0015572-T01-IM6	SOMATIC	NF1	NF1	17	17	29541475	29665852	Exon 13 of NF1(+)	Intron of NF1(+): 29bp after exon 45	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1399_c.6921+29dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	124377	NA	0	25	47	14
P-0015575-T01-IM6	SOMATIC	RICTOR	C9	5	5	38967255	39230117	Intron of RICTOR(-): 8bp after exon 14	IGR: 54Kb before C9(-)	GRCh37	INVERSION	RICTOR (NM_152756) Rearrangement : c.1218+8:RICTOR_chr5:39230117inv	PRECISE		MANUAL_OK	5to5	-	262862	NA	0	13	21	13
P-0015588-T01-IM6	SOMATIC	RET	C10orf118	10	10	43610308	115896803	Intron of RET(+): 124bp after exon 11	Intron of C10orf118(-): 142bp after exon 7	GRCh37	INVERSION	C10orf118 (NM_018017) - RET (NM_020975) Rearrangement : c.1326+142:C10orf118_c.2136+124:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (C10orf118-RET)	72286495	NA	0	27	60	25
P-0015589-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52439410	52451975	Intron of BAP1(-): 100bp before exon 11	Intron of PHF7(+): 2Kb before exon 5	GRCh37	DELETION	BAP1 (NM_004656) Rearrangement : c.932-100:BAP1_c.187-1874:PHF7del	PRECISE		MANUAL_OK	3to5	-	12565	NA	0	27	44	27
P-0015600-T01-IM6	SOMATIC	TAP1	COL11A2	6	6	32813321	33152555	3-UTR of TAP1(-): 35bp after coding stop	Intron of COL11A2(-): 214bp after exon 6	GRCh37	DUPLICATION	TAP1 (NM_000593) Rearrangement : c.*35:TAP1_c.939+214:COL11A2dup	PRECISE		MANUAL_OK	5to3	-	339234	NA	0	62	72	62
P-0015618-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68842104	68844025	Intron of CDH1(+): 223bp before exon 4	Intron of CDH1(+): 75bp before exon 6	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.388-223_c.688-75del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	1921	NA	0	48	40	43
P-0015618-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71026196	71036467	Intron of FOXP1(-): 3bp before exon 17	Intron of FOXP1(-): 678bp after exon 14	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1429-3_c.1146+678del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	10271	NA	0	100	76	98
P-0015628-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863466	42870143	Intron of ERG(-): 7Kb after exon 1	Intron of TMPRSS2(-): 27bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-27:TMPSS2_c.18+6821:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3006677	NA	0	93	58	89
P-0015630-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11125254	11138584	Intron of SMARCA4(+): 1Kb after exon 15	Exon 23 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.2438+1466_c.3340dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	13330	NA	0	28	34	27
P-0015631-T01-IM6	SOMATIC	FASTK	TERT	7	5	150777831	1295439	Exon 1 of FASTK(-)	Promoter of TERT(-): 277bp from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;7)(p15.33;q36.1)(chr5:g.1295439::chr7:g.150777831)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FASTK-TERT)	0	NA	0	31	0	30
P-0015640-T01-IM6	SOMATIC	PPP2R1A	ZNF468	19	19	52716189	53344778	Intron of PPP2R1A(+): 19bp before exon 6	Exon 5 of ZNF468(-)	GRCh37	DELETION	PPP2R1A (NM_014225) rearrangement: c.652-19_chr19:g.53344778del	PRECISE		MANUAL_OK	3to5	Antisense fusion	628589	NA	0	102	71	104
P-0015646-T01-IM6	SOMATIC	CRKL	HIVEP3	22	1	21295059	42103411	Intron of CRKL(+): 7Kb after exon 2	5-UTR of HIVEP3(-): 53Kb before coding start	GRCh37	TRANSLOCATION	CRKL (NM_005207) rearrangement: t(1:22)(p34.2;q11.21)(chr1:g.42103411::chr22:g.21295059)	PRECISE		MANUAL_OK	5to5	Transcript fusion (HIVEP3-CRKL)	0	NA	0	7	11	7
P-0015646-T01-IM6	SOMATIC	NAF1	FAT1	4	4	163601704	187629007	IGR: 446Kb before NAF1(-)	Exon 2 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: chr4:g.163601704_ c.1975Ginv	PRECISE		MANUAL_OK	3to3	-	24027303	NA	0	25	27	25
P-0015668-T01-IM6	SOMATIC	VEGFA	CAPN11	6	6	43748451	44147781	Intron of VEGFA(+): 18bp before exon 6	Exon 14 of CAPN11(+)	GRCh37	DUPLICATION	CAPN11 (NM_007058) - VEGFA (NM_001171625) Rearrangement : c.1521:CAPN11_c.423-18:VEGFAdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (CAPN11-VEGFA)	399330	NA	0	25	26	25
P-0015674-T01-IM6	SOMATIC	MGA	MGA	15	15	41990041	41991319	Intron of MGA(+): 820bp after exon 3	Exon 5 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: 2013+820_c.2150del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1278	NA	0	34	46	34
P-0015674-T01-IM6	SOMATIC	MDC1	C3orf57	6	3	30668411	161148916	Intron of MDC1(-): 2bp before exon 15	IGR: 59Kb after C3orf57(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(3;6)(q26.1;p21.33)(chr3:g.161148916::chr6:g.30668411)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	14	31
P-0015675-T01-IM6	SOMATIC	MLL3	VIPR2	7	7	151860356	159036888	Exon 43 of MLL3(-)	IGR: 216Kb before VIPR2(-)	GRCh37	INVERSION	MLL3 (NM_170606) rearrangement: c.10306:MLL3_g.159036888inv	PRECISE		MANUAL_OK	5to5	-	7176532	NA	0	10	24	9
P-0015676-T01-IM6	SOMATIC	MLL	DDX6	11	11	118373183	118626801	Exon 27 of MLL(+)	Intron of DDX6(-): 168bp after exon 11	GRCh37	DUPLICATION	MLL (NM_001197104) rearrangement : c.6576:MLL_g.118626801dup	PRECISE		MANUAL_OK	5to3	-	253618	NA	0	10	34	9
P-0015676-T01-IM6	SOMATIC	CACNA1B	BAP1	9	3	140784264	52437443	Intron of CACNA1B(+): 7Kb after exon 3	Exon 13 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_023034) rearrangement: t(3;9)(p21.1;q34.3)(chr3:g.52437443::chr9:g.140784264)	PRECISE		MANUAL_OK	3to5	Antisense fusion	0	NA	0	43	21	42
P-0015689-T01-IM6	SOMATIC	RFWD2	ACBD6	1	1	176105709	180459257	Intron of RFWD2(-): 26bp before exon 7	Intron of ACBD6(-): 2Kb after exon 3	GRCh37	INVERSION	RFWD2 (NM_022457) rearrangement : c.832-26:RFWD2_g.180459257inv	PRECISE		MANUAL_OK	3to3	-	4353548	NA	0	16	19	15
P-0015692-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72992241	73018578	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-): 25Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.4970_g.112190339del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	26337	NA	0	18	28	17
P-0015699-T01-IM6	SOMATIC	ALK	SPTBN1	2	2	29447437	54847509	Intron of ALK(-): 890bp after exon 19	Intron of SPTBN1(+): 1Kb before exon 8	GRCh37	INVERSION	SPTBN1 (NM_003128) - ALK (NM_004304) fusion (SPTBN1 exon 7  fused to  ALK exon 20):  c.764-1028:SPTBN1_c.3172+890:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (SPTBN1-ALK)	25400072	NA	0	13	40	13
P-0015709-T01-IM6	SOMATIC	CDKN1B	APOLD1	12	12	12871847	12948373	Exon 2 of CDKN1B(+)	IGR: 4Kb after APOLD1(+)	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.564_chr12:g.12948373del	PRECISE		MANUAL_OK	3to5	-	76526	NA	0	6	9	6
P-0015711-T01-IM6	SOMATIC	CAPZA2	BRAF	7	7	116511653	140495400	Intron of CAPZA2(+): 9Kb after exon 1	Intron of BRAF(-): 1Kb before exon 8	GRCh37	DUPLICATION	BRAF (NM_004333) - CAPZA2 (NM_006136) rearrangement:  c.981-1133:BRAF_c.39+8949:CAPZA2dup	PRECISE		MANUAL_OK	5to3	-	23983747	NA	0	39	55	37
P-0015713-T01-IM6	SOMATIC	RB1	RB1	13	13	48942648	48949434	Intron of RB1(+): 15bp before exon 11	Intron of RB1(+): 2Kb before exon 13	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1050-15_c.1216-1620dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: out of frame	6786	NA	0	44	36	44
P-0015722-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55098152	55221829	Intron of EGFR(+): 11Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+11094_c.873del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	123677	NA	0	102	185	408
P-0015722-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268967	55269602	Exon 25 of EGFR(+)	Intron of EGFR(+): 127bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3033_c.3162+127del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	635	NA	0	100	788	1048
P-0015726-T01-IM6	SOMATIC	C1orf130	ELF3	1	1	24920380	201982036	5-UTR of C1orf130(+): 2Kb before coding start	Intron of ELF3(+): 39bp before exon 6	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: chr1:g.24920380_c.599-39:ELF3inv	PRECISE		MANUAL_OK	5to5	-	177061656	NA	0	47	69	40
P-0015727-T01-IM6	SOMATIC	ATM	ATM	11	11	108187209	108188177	Intron of ATM(+): 369bp after exon 42	Exon 43 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) Rearrangement : c.6198+369_6276del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	968	NA	0	12	0	12
P-0015734-T01-IM6	SOMATIC	MAPK3	MAPK3	16	16	30134528	30135079	Exon 1 of MAPK3(-)	Promoter of MAPK3(-): 449bp from tx start	GRCh37	DELETION	MAPK3 (NM_002746) Rearrangement : c.-549_c.3del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	551	NA	0	88	0	83
P-0015735-T01-IM6	SOMATIC	CCDC45	RPTOR	17	17	62508201	78811904	Intron of CCDC45(+): 2Kb after exon 3	Intron of RPTOR(+): 107bp after exon 10	GRCh37	DUPLICATION	RPTOR (NM_020761) - CEP95 (NM_138363) Rearrangement : c.1212+107:RPTOR_c.256+1803:CEPN5dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (RPTOR-CCDC45)	16303703	NA	0	5	15	5
P-0015742-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115117497	115489107	Intron of TBX3(-): 41bp before exon 3	IGR: 381Kb before TBX3(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: chr12:g.115489107_c.718-41del	PRECISE		MANUAL_OK	3to5	-	371610	NA	0	27	39	27
P-0015744-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39940431	42871033	Intron of ERG(-): 7Kb after exon 3	Intron of TMPRSS2(-): 917bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2  exon 1 fused to ERG exons 4-11): c.56-917:TMPRSS2_c.39+7155:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2930602	NA	0	20	55	20
P-0015744-T01-IM6	SOMATIC	EWSR1	NF2	22	22	29691931	30089394	Intron of EWSR1(+): 298bp before exon 11	Intron of NF2(+): 1Kb before exon 5	GRCh37	INVERSION	EWSR1 (NM_013986) - NF2 (NM_000268) rearrangement: c.1180-298:EWSR1_c.1738-1347:NF2inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	397463	NA	0	26	35	26
P-0015744-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39940431	42871034	Intron of ERG(-):7Kb after exon 3	Intron of TMPRSS2(-):918bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2  exon 1 fused to ERG exons 4-11): c.56-918:TMPRSS2_c.39+7155:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2930603	NA	0	114	10	142
P-0015744-T02-IM6	SOMATIC	EWSR1	NF2	22	22	29691937	30089394	Intron of EWSR1(+):291bp before exon 13	Intron of NF2(+):1Kb before exon 16	GRCh37	INVERSION	EWSR1 (NM_013986) - NF2 (NM_000268) rearrangement: c.1180-292:EWSR1_c.1738-1347:NF2inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	397457	NA	0	51	10	50
P-0015744-T02-IM6	SOMATIC	LINC00877	SHQ1	3	3	71958034	72873440	IGR: 127Kb before LINC00877(-)	Intron of SHQ1(-):134bp after exon 6	GRCh37	DELETION	SHQ1 (NM_018130) rearrangement: c.727+135_chr3:g.71958034del	PRECISE		MANUAL_OK	3to5	-	915406	NA	0	16	10	17
P-0015751-T01-IM6	SOMATIC	STAT5A	LOC341056	17	11	40461499	122871383	Exon 19 of STAT5A(+)	IGR: 17Kb before LOC341056(+)	GRCh37	TRANSLOCATION	STAT5A (NM_003152) rearrangement: t(11;17)(q24.1;q21.2)(chr11:g.122871383::chr17:g.40461499)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	19	0	19
P-0015759-T01-IM6	SOMATIC	MLL2	MLL2	12	12	49421887	49423029	Exon 46 of MLL2(-)	Intron of MLL2(-): 10bp before exon 44	GRCh37	DELETION	MLL2 (NM_003482) Rearrangement : c.14076-10_c.14420del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1142	NA	0	48	67	48
P-0015764-T01-IM6	SOMATIC	NOTCH2	PDE4DIP	1	1	120480528	144996552	Exon 20 of NOTCH2(-)	Intron of PDE4DIP(-): 2Kb before exon 4	GRCh37	DUPLICATION	NOTCH2 (NM_024408) - PDE4DIP (NM_001198834) Rearrangement : c.3289:NOTCH2_c.-1821:PDE4DIPdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NOTCH2-PDE4DIP)	24516024	NA	0	11	26	11
P-0015829-T01-IM6	SOMATIC	DNER	PDCD1	2	2	230249523	242794656	Intron of DNER(-):3Kb after exon 11	Intron of PDCD1(-):116bp after exon 2	GRCh37	INVERSION	PDCD1 (NM_005018)  - DNER (NM_139072) rearrangement: c.436+117:PDCD1_c.1855+3458:DNERinv	PRECISE		MANUAL_OK	3to3	-	12545133	NA	0	4	10	5
P-0015831-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9777305	9784836	Intron of PIK3CD(+):139bp after exon 7	Intron of PIK3CD(+):25bp before exon 23	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.930+139_c.2865-26inv	PRECISE		MANUAL_OK	3to5	Deletion of 15 exons : out of frame	7531	NA	1	50	10	54
P-0015831-T01-IM6	SOMATIC	GATA3	LINK01206	10	3	8106176	181861092	Intron of GATA3(+):75bp after exon 4	IGR:191Kb before LINC01206(+)	GRCh37	TRANSLOCATION		IMPPRECISE		MANUAL_OK	3to5	-	0	NA	NA	5	0	NA
P-0015837-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859543	42871440	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-1324:TMPSS2_c.18+10744:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011897	NA	0	24	10	26
P-0015839-T01-IM6	SOMATIC	FGGY	JAK1	1	1	59823362	65349082	Intron of FGGY(+):11Kb after exon 4	Exon 3 of JAK1(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: g.59823362_c.83del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5525720	NA	0	33	10	35
P-0015839-T01-IM6	SOMATIC	PRKG1	FGFR2	10	10	53199568	123240958	Intron of PRKG1(+):28Kb before exon 3	Intron of FGFR2(-):1Kb before exon 18	GRCh37	DUPLICATION	FGFR2 (NM_000141) rearrangement: g.53199568_c.2302-1423dup	PRECISE		MANUAL_OK	5to3	-	70041390	NA	0	24	10	31
P-0015847-T02-IM6	SOMATIC	CBL	CBL	11	11	119149057	119153951	Intron of CBL(+):50bp after exon 8	Intron of CBL(+):2Kb before exon 10	GRCh37	DELETION	CBL (NM_005188) Rearrangement : c.1227+50_c.1432-1728del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	4894	NA	0	27	10	27
P-0015847-T02-IM6	SOMATIC	BRAF	ITGB5	7	3	140497019	124579522	Intron of BRAF(-):3Kb before exon 8	Intron of ITGB5(-):1Kb before exon 3	GRCh37	TRANSLOCATION	BRAF (NM_004333) - ITGB5 (NM_002213)  Rearrangement : t(3,7)(q21.2,q34)(chr3:g.124579522::chr7:g.140497019)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BRAF:ITGB5}	0	NA	0	19	10	20
P-0015849-T01-IM6	SOMATIC	PABPC1P2	ARID1A	2	1	147174940	27094485	IGR: 170Kb before PABPC1P2(+)	Exon 11 of ARID1A(+)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	-	0	NA	NA	68	155	NA
P-0015850-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39938394	42878843	Intron of ERG(-):9Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 to ERG exon 4): c.55+1034:TMPRSS2_c.39+9192:ERG	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2940449	NA	0	18	10	19
P-0015850-T01-IM6	SOMATIC	TMPRSS2	SGMS2	21	4	42840444	108828375	Exon 12 of TMPRSS2(-)	Intron of SGMS2(+):1Kb before exon 6	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SGMS2:TMPRSS2}	0	NA	NA	49	105	NA
P-0015863-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737199	1808880	Intron of TACC3(+):147bp after exon 7	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 8-16): c.2312:FGFR3_c.1644+147:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71681	NA	0	116	10	133
P-0015874-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974507	21981196	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: chr9:g.21981196_c.150+170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6689	NA	0	16	10	17
P-0015885-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180056742	180057289	Exon 6 of FLT4(-)	Exon 4 of FLT4(-)	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.449_c.770del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	547	NA	5	2	8	0
P-0015889-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32190224	32190753	Intron of NOTCH4(-):63bp after exon 3	Intron of NOTCH4(-):28bp after exon 2	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: chr6:g.32190224_chr6:g.32190753inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	529	NA	0	2	9	2
P-0015892-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156844413	156844921	Exon 10 of NTRK1(+)	Intron of NTRK1(+):121bp after exon 11	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.1246_c.1354+121del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	508	NA	3	2	7	0
P-0015892-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187628832	187629381	Exon 2 of FAT1(-)	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement : c.2150_c.1601del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	549	NA	2	2	10	0
P-0015895-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55232552	55233062	Intron of EGFR(+):420bp before exon 15	Exon 15 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1723-421_c.1812del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	510	NA	0	0	10	0
P-0015895-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151877154	151877794	Exon 37 of KMT2C(-)	Intron of KMT2C(-):1bp after exon 36	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.7149+2_c.7207del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	640	NA	2	2	7	0
P-0015896-T01-IM6	SOMATIC	KANSL2	KMT2D	12	12	49055131	49431557	Intron of KANSL2(-):729bp before exon 8	Exon 34 of KMT2D(-)	GRCh37	DUPLICATION	KANSL2 (NM_017822) - KMT2D (NM_003482) rearrangement: c.974-729:KANSL2_c.9582dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KANSL2:KMT2D}	376426	NA	0	18	10	19
P-0015896-T01-IM6	SOMATIC	ORC2	CASP8	2	2	201780633	202139650	Intron of ORC2(-):2Kb before exon 16	Exon 6 of CASP8(+)	GRCh37	DUPLICATION	CASP8 (NM_00108012) rearrangement: c.1_c.589dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	359017	NA	0	16	10	16
P-0015903-T01-IM6	SOMATIC	NOS1AP	NUF2	1	1	162062049	163307862	Intron of NOS1AP(+):22Kb after exon 1	Exon 7 of NUF2(+)	GRCh37	DUPLICATION	NUF2 (NM_031423) - NOS1AP (NM_014697) rearrangement: c.488:NUF2_c.105+21977:NOS1APdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NUF2:NOS1AP}	1245813	NA	0	29	10	31
P-0015903-T01-IM6	SOMATIC	DDR2	CD247	1	1	162745603	167438149	Exon 15 of DDR2(+)	Intron of CD247(-):28Kb before exon 2	GRCh37	DELETION	DDR2 (NM_006182) rearrangement: c.2018_g.167438149del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4692546	NA	0	14	10	14
P-0015903-T01-IM6	SOMATIC	METTL13	RFWD2	1	1	171760607	176055002	Intron of METTL13(+):549bp before exon 6	Exon 10 of RFWD2(-)	GRCh37	DUPLICATION	RFWD2 (NM_022457) rearrangement: g.171760607_c.1051dup	PRECISE		MANUAL_OK	5to3	-	4294395	NA	0	22	10	23
P-0015937-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2976834	2977582	Exon 9 of CARD11(-)	Exon 8 of CARD11(-)	GRCh37	DELETION	CARD11 (NM_032415) Rearrangement : c.1102_c.1178del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	748	NA	0	5	0	7
P-0015942-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60553184	123241020	Intron of BICC1(+):59bp before exon 9	Intron of FGFR2(-):1Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) Fusion (FGFR2 exons 1-17 with BICC1 exons 9-21) : c.2302-1485:FGFR2_c.1048-60:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62687836	NA	0	33	10	50
P-0015952-T01-IM6	SOMATIC	FOXO1	FOXO1	13	13	41133814	41135728	Exon 2 of FOXO1(-)	Intron of FOXO1(-):731bp before exon 2	GRCh37	DELETION	FOXO1 (NM_002015) Rearrangement : c.631-731_c.1814del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1914	NA	0	30	10	33
P-0015952-T02-IM6	SOMATIC	FOXO1	FOXO1	13	13	41133814	41135728	Exon 2 of FOXO1(-)	Intron of FOXO1(-):731bp before exon 2	GRCh37	DELETION	FOXO1 (NM_002015) rearrangement: c.1814_c.631-731del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1914	NA	0	4	10	4
P-0015959-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29688575	29740088	Exon 12 of EWSR1(+)	Intron of AP1B1(-):2Kb before exon 12	GRCh37	DELETION	EWSR1 (NM_013986) - AP1B1 (NM_001127) rearrangement: c.1159:EWSR1_c.1438-1716:AP1B1del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	51513	NA	0	42	10	108
P-0015960-T01-IM6	SOMATIC	U2AF2	HIST1H3B	19	6	56181895	26032161	Intron of U2AF2(+):837bp after exon 11	Exon 1 of HIST1H3B(-)	GRCh37	TRANSLOCATION	U2AF2 (NM_007279) - HIST1H3B (NM_003537) rearrangement: t(6;19)(p22.2;q13.42)(chr6:g.26032161::chr19:g.56181895)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {U2AF2:HIST1H3B}	0	NA	0	40	10	133
P-0015960-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882321	42870232	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):116bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exon 4): c.56-116:TMPRSS2_c.40-64777:ERG	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987911	NA	0	103	10	124
P-0015961-T01-IM6	SOMATIC	ALK	EML4	2	2	29446526	42501324	Intron of ALK(-):132bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063)  - ALK (NM_004304 ) fusion (EML4 exon 6fused to ALK exon 20): c.668-6666:EML4_c.3173-132:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054798	NA	0	20	10	20
P-0015962-T01-IM6	SOMATIC	SPG11	B2M	15	15	44908323	45007871	Intron of SPG11(-):559bp before exon 16	Exon 2 of B2M(+)	GRCh37	DELETION	SPG11 (NM_025137) - B2M (NM_004048) rearrangement: c.2835-559:SPG11_c.318:B2Mdel	PRECISE		MANUAL_OK	3to5	-	99548	NA	0	5	10	5
P-0015962-T01-IM6	SOMATIC	REL	SH3BP4	2	2	61149569	236014429	Exon 11 of REL(+)	IGR: 154Kb before SH3BP4(+)	GRCh37	INVERSION	REL (NM_002908) rearrangement: c.1759_chr2:g.236014429inv	PRECISE		MANUAL_OK	3to3	-	174864860	NA	0	36	10	35
P-0015972-T01-IM6	SOMATIC	ARHGAP42	PGR	11	11	100820884	100922095	Intron of ARHGAP42(+):197bp after exon 12	Intron of PGR(-):59bp after exon 5	GRCh37	DELETION	ARHGAP42 (NM_152432) - PGR (NM_000926)  rearrangement: c.1162+197:ARHGAP42_c.2357+60:PGRdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	101211	NA	0	37	10	38
P-0015972-T01-IM6	SOMATIC	EGFR	ELDR	7	7	55270105	55303080	Intron of EGFR(+):104bp before exon 27	IGR: 3Kb before ELDR(-)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3163-105_chr7:g.55303080del	PRECISE		MANUAL_OK	3to5	-	32975	NA	0	60	10	60
P-0015973-T01-IM6	SOMATIC	INPPL1	LOC220729	11	3	71944080	197336862	Intron of INPPL1(+):38bp before exon 17	IGR: 4Kb before LOC220729(-)	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(3;11)(q29;q13.4)(chr3:g.197336862::chr11:g.71944080)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0015980-T01-IM6	SOMATIC	FAM205BP	RAD21	9	8	34869851	117864822	IGR: 40Kb before FAM205BP(-)	Exon 10 of RAD21(-)	GRCh37	TRANSLOCATION	RAD21 (NM_006265) rearrangement: t(8;9)(q24.11;p13.3)(chr8:g.117864822::chr9:g.34869851)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	38	10	37
P-0015989-T01-IM6	SOMATIC	FMN1	NAB2	15	12	33270869	57487944	Intron of FMN1(-):9Kb before exon 4	Intron of NAB2(+):450bp before exon 7	GRCh37	TRANSLOCATION	FMN1 (NM_001103184) - NAB2 (NM_005967) Rearrangement : t(12,15)(q13.3,q13.3)(chr12:g.57487944::chr15:g.33270869)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FMN1:NAB2}	0	NA	0	104	0	200
P-0016006-T01-IM6	SOMATIC	AMIGO2	KMT2D	12	12	47396442	49448401	IGR: 73Kb before AMIGO2(-)	Exon 3 of KMT2D(-)	GRCh37	DUPLICATION	KMDT2D (NM_170606) : c.1_310:KMDT2Ddup	PRECISE		MANUAL_OK	5to3	-	2051959	NA	0	34	10	39
P-0016006-T01-IM6	SOMATIC	GTF2I	MET	7	7	74115676	116414441	Intron of GTF2I(+):712bp after exon 6	Intron of MET(+):493bp before exon 15	GRCh37	DELETION	GTF2I:NM_032999 - MET:NM_000245 : c.586+712:GTF2I_c.3029-494:METdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GTF2I:MET}	42298765	NA	0	21	10	94
P-0016009-T01-IM6	SOMATIC	EGFR	VOPP1	7	7	55220393	55611984	Intron of EGFR(+):36bp after exon 6	Intron of VOPP1(-):23Kb before exon 2	GRCh37	INVERSION	EGFR (NM_005228) - VOPP1 (NM_030796): c.747+36:EGFR_c.55-23161VOPP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:VOPP1}	391591	NA	0	4	9	4
P-0016012-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151822136	151845389	Promoter of GALNT11(+):99Kb from tx start	Exon 52 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangment: chr7:g.151822136_c.13623:KMT2Cinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GALNT11:KMT2C}	23253	NA	0	20	10	20
P-0016015-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876278	42870664	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):548bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exon 4) : c.56-548:TMPRSS2_c.40-58734:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994386	NA	0	46	10	48
P-0016027-T01-IM6	SOMATIC	SMARCA4	TPM4	19	19	11096819	16179231	Intron of SMARCA4(+):45bp before exon 4	Intron of TPM4(+):683bp after exon 1	GRCh37	DUPLICATION	TPM4 (NM_001145160) - SMARCA4 (NM_003072) rearrangement: c.114+683:TPM4_c.356-46:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TPM4:SMARCA4}	5082412	NA	0	12	10	12
P-0016046-T01-IM6	SOMATIC	ROS1	SLC34A2	6	4	117662059	25667671	Intron of ROS1(-):238bp after exon 30	Intron of SLC34A2(+):78bp before exon 5	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - SLC34A2(NM_006424) fusion: t(4;6) (p15;q22)(chr4:g.25667671::chr6:g.117662059)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SLC34A2:ROS1}	0	NA	0	28	10	27
P-0016048-T01-IM6	SOMATIC	PHOX2B	SCFD2	4	4	41749481	54100527	Exon 2 of PHOX2B(-)	Intron of SCFD2(-):39Kb after exon 4	GRCh37	DELETION	SCFD2 (NM_152540) - PHOX2B (NM_003924) rearrangement: c.1311+39466:SCFD2_c.314:PHOX2Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SCFD2:PHOX2B}	12351046	NA	0	12	10	15
P-0016052-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980394	201981140	Exon 2 of ELF3(+)	Exon 3 of ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.130_c.219del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	746	NA	1	7	0	128
P-0016052-T01-IM6	SOMATIC	DOT1L	OAZ1	19	19	2199905	2272101	Exon 8 of DOT1L(+)	Intron of OAZ1(+):148bp after exon 3	GRCh37	DUPLICATION	OAZ1 (NM_004152) - DOT1L (NM_032482) rearrangement: c.464+148:OAZ1_c.674:DOT1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {OAZ1:DOT1L}	72196	NA	0	17	10	20
P-0016052-T01-IM6	SOMATIC	ZHX3	PTPRT	20	20	39924600	41001410	5-UTR of ZHX3(-):111Kb before coding start	Intron of PTPRT(-):20Kb before exon 10	GRCh37	DUPLICATION	ZHX3 (NM_015035) - PTPRT (NM_133170) rearrangement: c.-245+4006:ZHX3_c.1561-20485:PTPRTdup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {ZHX3:PTPRT}	1076810	NA	0	6	10	7
P-0016054-T01-IM6	SOMATIC	MAP3K14	KANSL1	17	17	43363676	44162424	Intron of MAP3K14(-):121bp after exon 5	Intron of KANSL1(-):3Kb before exon 5	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.1151+122:MAP3K14_chr17:g.44162424inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	798748	NA	0	40	10	45
P-0016063-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875458	42867018	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):513bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1-2 with ERG exon 4-11) : c.127-513:TMPRSS2_c.40-57914:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991560	NA	0	77	10	79
P-0016087-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885739	42874068	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 4-11) : c.56-3952:TMPRSS2_c.39+61847:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2988329	NA	0	10	10	10
P-0016093-T01-IM6	SOMATIC	LINC00583	PAX5	9	9	13718261	36882041	IGR: 210Kb before LINC00583(+)	Exon 8 of PAX5(-)	GRCh37	INVERSION	PAX5 (NM_016734) rearrangement : g.13718261_c.972:PAX5inv	PRECISE		MANUAL_OK	5to5	-	23163780	NA	0	21	10	31
P-0016093-T02-IM6	SOMATIC	NHSL2	TEK	X	9	71149521	27209165	Intron of NHSL2(+):18Kb after exon 1	Exon 16 of TEK(+)	GRCh37	TRANSLOCATION	TEK (NM_000459) - NHSL2 (NM_001013627) rearrangement: t(9;X)(p21.2;q13.1)(chr9:g.27209165::chrX:g.71149521)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	20
P-0016094-T01-IM6	SOMATIC	CDKN2Ap14ARF	LINGO2	9	9	21968113	28674079	3-UTR  of CDKN2Ap14ARF(-)	5-UTR of LINGO2(-):725Kb before coding start	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement : c.*230:CDKN2Ap14ARF_g.28674079inv	PRECISE		MANUAL_OK	5to5	-	6705966	NA	NA	8	10	NA
P-0016094-T01-IM6	SOMATIC	CDKN2Ap16INK4A	LINGO2	9	9	21968113	28674079	3-UTR  of CDKN2Ap16INK4A(-)	5-UTR of LINGO2(-):725Kb before coding start	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.*115:CDKN2Ap16INK4A_g.28674079inv	PRECISE		MANUAL_OK	5to5	-	6705966	NA	0	8	10	8
P-0016116-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241075	55269774	Intron of EGFR(+):258bp after exon 17	Intron of EGFR(+):299bp after exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement:  c.2061+258_c.3162+299dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28699	NA	0	45	10	50
P-0016117-T01-IM6	SOMATIC	ARID1B	LOC102724511	6	6	157099746	170354686	Exon 1 of ARID1B(+)	IGR: 121Kb before LOC102724511(+)	GRCh37	DUPLICATION	ARID1B (NM_020732) rearrangement: c.683_chr6:g.170354686dup	PRECISE		MANUAL_OK	5to3	-	13254940	NA	0	36	10	38
P-0016129-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9761823	9783282	5-UTR of PIK3CD(+):9Kb before coding start	Exon 20 of PIK3CD(+)	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.-32-8659_c.2526del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21459	NA	0	39	10	40
P-0016134-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39844066	42870509	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):393bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1 with ERG exons 2-10) : c.56-393:TMPRSS2_c.18+26221:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3026443	NA	0	25	10	34
P-0016166-T01-IM6	SOMATIC	FANCA	ANK2	16	4	89849385	114250094	Intron of FANCA(-):29bp after exon 16	Intron of ANK2(+):1Kb before exon 27	GRCh37	TRANSLOCATION	FANCA (NM_000135) -ANK2 (NM_001148) Rearrangement: t(4,16)(q26,q24.3)(chr4:g.114250094::chr16:g.89849385)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FANCA:ANK2}	0	NA	0	25	10	31
P-0016166-T01-IM6	SOMATIC	SMC6	HIST3H3	2	1	17934248	228612736	5-UTR of SMC6(-):87Kb before coding start	Exon 1 of HIST3H3(-)	GRCh37	TRANSLOCATION	HIST3H3 (NM_003493)- SMC6 (NM_024624) Rearrangement : t(1,2)(q42.13,q42.13)(chr1:g.228612736::chr2:g.17934248)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HIST3H3:SMC6}	0	NA	0	5	0	5
P-0016168-T01-IM6	SOMATIC	TP53	TP53	17	17	7578113	7579662	Intron of TP53(-):63bp after exon 6	Intron of TP53(-):37bp after exon 3	GRCh37	DUPLICATION	TP53 (NM_000546) Rearrangement : c.96+38_c.672+64dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	1549	NA	0	109	10	122
P-0016171-T01-IM6	SOMATIC	LINC01514	SUFU	10	10	102943066	104359256	5-UTR of LINC01514(+):11Kb before coding start	Exon 8 of SUFU(+)	GRCh37	DUPLICATION	SUFU (NM_016169) rearrangement: g.102943066_c.977:SUFUdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SUFU:LINC01514}	1416190	NA	0	20	10	21
P-0016171-T01-IM6	SOMATIC	STAT3	EZH1	17	17	40489839	40881610	Exon 7 of STAT3(-)	5-UTR of EZH1(-):27Kb before coding start	GRCh37	DUPLICATION	STAT3 (NM_139276) - EZH1 (NM_001991) rearrangement: c.587:STAT3_c.-11-640:EZH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STAT3:EZH1}	391771	NA	0	9	10	10
P-0016171-T01-IM6	SOMATIC	STAG2	LOC100129520	X	X	123179049	124276665	Exon 8 of STAG2(+)	IGR: 177Kb before LOC100129520(+)	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.498:STAG2_g.124276665dup	PRECISE		MANUAL_OK	5to3	-	1097616	NA	0	21	10	23
P-0016175-T01-IM6	SOMATIC	DNMT3B	C6orf118	20	6	31375366	165208692	Intron of DNMT3B(+):109bp after exon 6	IGR: 484Kb before C6orf118(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement:  t(6;20)(q27;q11.21)(chr6:g.165208692::chr20:g.31375366)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	18
P-0016175-T01-IM6	SOMATIC	EYS	ROS1	6	6	66194183	117647325	Intron of EYS(-):6Kb after exon 5	Intron of ROS1(-):61bp after exon 33	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: g.66194183_c.5557+62:ROS1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	51453142	NA	0	68	10	96
P-0016178-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89349037	89351384	Exon 9 of ANKRD11(-)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.3913_c.1566del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2347	NA	0	85	10	96
P-0016180-T01-IM6	SOMATIC	LINC01320	REL	2	2	34704420	61128243	IGR: 198Kb before LINC01320(+)	Intron of REL(+):25bp after exon 4	GRCh37	INVERSION	REL (NM_002908) rearrangement : g.34704420_c.394+25:RELinv	PRECISE		MANUAL_OK	3to3	-	26423823	NA	10	6	10	23
P-0016181-T02-IM6	SOMATIC	UBL3	PLK2	13	5	30247920	57754385	IGR: 91Kb before UBL3(-)	Intron of PLK2(-):30bp before exon 4	GRCh37	TRANSLOCATION	PLK2 (NM_006622) rearrangement: t(5;13)(q11.2;q12.3)(chr5:g.57754385::chr13:g.30247920)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	30
P-0016186-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14226003	14628605	Intron of PRKACA(-):2Kb after exon 1	Intron of DNAJB1(-):345bp after exon 1	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion ( DNAJB1 exon 1 fused with PRKACA exons 2-10 )  : c.211+346:DNAJB1_c.46+2311:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	402602	NA	0	2	9	2
P-0016187-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	245909232	245927387	IGR: 3Kb before SMYD3(-)	Exon 11 of SMYD3(-)	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement : c.1141_chr1:g.245909232del	PRECISE		MANUAL_OK	3to5	-	18155	NA	0	2	10	13
P-0016187-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18972911	18975014	Exon 18 of UPF1(+)	Exon 20 of UPF1(+)	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement : c.2550_c.2811inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2103	NA	0	18	10	18
P-0016190-T01-IM6	SOMATIC	MAP3K1	GPBP1	5	5	56161244	56348204	Exon 5 of MAP3K1(+)	IGR: 122Kb before GPBP1(+)	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement : c.1113:MAP3K1_chr5:g.56348204del	PRECISE		MANUAL_OK	3to5	-	186960	NA	0	59	10	68
P-0016193-T01-IM6	SOMATIC	ALK	STRN	2	2	29448326	37138302	Exon 19 of ALK(-)	Intron of STRN(-):5Kb after exon 3	GRCh37	DELETION	ALK (NM_004304) - STRN (NM_003162)  :c.3172+1:ALK_c.412+4919:STRNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STRN:ALK}	7689976	NA	0	79	10	90
P-0016193-T02-IM6	SOMATIC	ALK	STRN	2	2	29448326	37138302	Exon 19 of ALK(-)	Intron of STRN(-):5Kb after exon 3	GRCh37	DELETION	ALK (NM_004304) - STRN (NM_003162)  :c.3172+1:ALK_c.412+4919:STRNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STRN:ALK}	7689976	NA	0	38	10	43
P-0016193-T05-IM6	SOMATIC	ALK	STRN	2	2	29448326	37138302	Exon 19 of ALK(-)	Intron of STRN(-):5Kb after exon 3	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion (STRN exons 1-3 fused with ALK exons 20-29): c.412+4919:STRN_c.3172+1:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STRN:ALK}	7689976	NA	0	55	10	59
P-0016195-T01-IM6	SOMATIC	GAB2	FGFR2	11	10	78030553	123242812	Intron of GAB2(-):39Kb before exon 2	Intron of FGFR2(-):399bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - GAB2 (NM_080491) fusion ( FGFR2 exons 1-17 fused with GAB2 exons 2-10 ) : t(10;11)(q26.11;q14.1)(chr10:g.123242812::chr11:g.78030553)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:GAB2}	0	NA	0	111	10	127
P-0016209-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55182523	55222127	Intron of EGFR(+):27Kb before exon 2	Intron of EGFR(+):282bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-27456_c.889+282del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	39604	NA	0	48	10	1168
P-0016213-T01-IM6	SOMATIC	ROS1	CD74	6	5	117649786	149783418	Intron of ROS1(-):705bp after exon 32	Intron of CD74(-):543bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149783418::chr6:g.117649786)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	62	10	63
P-0016215-T01-IM6	SOMATIC	DNMT1	RAVER1	19	19	10247646	10444054	Intron of DNMT1(-):114bp after exon 36	Exon 1 of RAVER1(-)	GRCh37	DUPLICATION	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.4441+115:DNMT1_c.181:RAVER1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT1:RAVER1}	196408	NA	0	9	0	9
P-0016215-T02-IM6	SOMATIC	DNMT1	RAVER1	19	19	10247683	10444054	Intron of DNMT1(-):77bp after exon 36	Exon 1 of RAVER1(-)	GRCh37	DUPLICATION	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.4441+78:DNMT1_c.181:RAVER1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT1:RAVER1}	196371	NA	0	5	0	5
P-0016215-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187625010	187630508	Intron of FAT1(-):3Kb after exon 2	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3265+2707_c.474del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5498	NA	0	7	10	7
P-0016218-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39995997	42868504	3-UTR of ERG(-):38Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 2 with ERG exons 3-11) : c.126+1542:TMPRSS2_c.-150+37585:ERGdel	PRECISE		MANUAL_OK	3to5	-	2872507	NA	0	47	10	50
P-0016221-T01-IM6	SOMATIC	KIF5B	RET	10	10	32317081	43611268	Intron of KIF5B(-):274bp after exon 15	Intron of RET(+):763bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused in-frame to RET exons 12-20) : c.1725+275:KIF5B_c.2137-764:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294187	NA	0	23	10	32
P-0016223-T01-IM6	SOMATIC	RFX2	EGFR	19	7	6053108	55223210	5-UTR of RFX2(-):58Kb before coding start	Intron of EGFR(+):312bp before exon 8	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;19)(p11.2;p13.3)(chr7:g.55223210::chr19:g.6053108)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	10	40
P-0016226-T01-IM6	SOMATIC	CDH2	MALT1	18	18	26544483	56363790	IGR: 1Mb before CDH2(-)	Intron of MALT1(+):71bp after exon 3	GRCh37	DUPLICATION	MALT1 (NM_006785) rearrangement: g.26544483_c.498+71:MALT1del	PRECISE		MANUAL_OK	5to3	-	29819307	NA	0	26	10	26
P-0016236-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39933922	42872990	Intron of ERG(-):14Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exon 4): c.56-2874:TMPRSS2_c.39+13664:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2939068	NA	0	16	0	16
P-0016237-T01-IM6	SOMATIC	PMFBP1	ZFHX3	16	16	72207086	72821818	Promoter of PMFBP1(-):54Kb from tx start	Exon 10 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) - PMFBP1 (NM_031293)  rearrangement: c.10357:ZFHX3_c.-1194:PMFBP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZFHX3:PMFBP1}	614732	NA	0	44	10	51
P-0016238-T01-IM6	SOMATIC	C1orf127	MTOR	1	1	10892644	11319407	IGR: 114Kb before C1orf127(-)	Exon 2 of MTOR(-)	GRCh37	DUPLICATION	MTOR (NM_004958) rearrangement: c.60_chr1:g.10892644dup	PRECISE		MANUAL_OK	5to3	-	426763	NA	0	56	10	67
P-0016238-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1740775	1808706	Intron of TACC3(+):653bp before exon 11	Intron of FGFR3(+):45bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exon 17 fused to TACC3 exon 11): c.2274+45:FGFR3_c.1942-654:TACC3inv	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67931	NA	0	70	10	127
P-0016244-T01-IM6	SOMATIC	LOC101927869	BRD4	21	19	25706468	15350666	IGR: 30Kb before LOC101927869(-)	Intron of BRD4(-):34bp before exon 16	GRCh37	TRANSLOCATION	BRD4:NM_058243 Rearrangement : t(19;21)(p13.12;q21.3)(chr19:g.15350666::chr21:g.25706468)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	72	10	69
P-0016246-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40481248	40489572	Intron of STAT3(-):179bp after exon 14	Exon 8 of STAT3(-)	GRCh37	DUPLICATION	STAT3 (NM_139276) Rearrangement : c.678_c.1281+180del	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8324	NA	0	104	10	118
P-0016246-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377707	139390620	5-UTR of SEC16A(-):42Kb before coding start	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617)- SEC16A (NM_014866) Rearrangement : c.7571:NOTCH1_c.-509:SEC16Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	12913	NA	0	61	10	66
P-0016249-T01-IM6	SOMATIC	KMT2D	CAMK2N1	12	1	49435847	20770001	Intron of KMT2D(-):24bp after exon 28	IGR: 39Kb before CAMK2N1(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) Rearrangement : t(1,12)(p36.12,q13.12)(chr1:g.20770001::chr12:g.49435847)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	43	10	75
P-0016249-T01-IM6	SOMATIC	TP53	PLCG2	17	16	7587545	81904500	5-UTR of TP53(-):15Kb before coding start	Exon 7 of PLCG2(+)	GRCh37	TRANSLOCATION	PLCG2 (NM_002661)- TP53 (NM_000546) Rearrangement : t(16,17)(q23.3,p13.1)(chr16:g.81904500::chr17:g.7587545)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	53	10	60
P-0016254-T01-IM6	SOMATIC	EFCAB13	SMAD3	17	15	45465290	67477157	Intron of EFCAB13(+):4Kb before exon 13	Exon 7 of SMAD3(+)	GRCh37	TRANSLOCATION	SMAD3 (NM_005902) - EFCAB13 (NM_001195192) rearrangement: t(15;17)(q22.33;q21.32)(chr15:g.67477157::chr17:g.45465290)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	10	11
P-0016256-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55195086	55221914	Intron of EGFR(+):15Kb before exon 2	Intron of EGFR(+):69bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-14893_c.889+69del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	26828	NA	0	54	10	64
P-0016256-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268390	55867725	Intron of EGFR(+):284bp after exon 24	Intron of SEPT14(-):4Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion( EGFR exons 1-24 fused to SEPT14 exons 9-10): c.2946+284:EGFR_c.1120-3940:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	599335	NA	0	20	10	19
P-0016280-T01-IM6	SOMATIC	ALK	EML4	2	2	29447905	42525649	Intron of ALK(-):421bp after exon 19	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) rearrangement: c.1316-2732:EML4_c.3172+422:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077744	NA	0	28	10	26
P-0016283-T01-IM6	SOMATIC	TTC28	CHEK1	22	11	29065758	125513979	Intron of TTC28(-):10Kb after exon 1	Intron of CHEK1(+):6bp before exon 10	GRCh37	TRANSLOCATION	TTC28 (NM_001145418) - CHEK1 (NM_001274) rearrangement : t (11;22)(q24.2;q12.2)(chr11:g.125513979::chr22:g.29065758)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TTC28:CHEK1}	0	NA	0	11	10	18
P-0016293-T01-IM6	SOMATIC	MITF	MITF	3	3	69845477	70008361	Intron of MITF(+):57Kb after exon 1	Intron of MITF(+):62bp before exon 9	GRCh37	DELETION	MITF (NM_198159) rearrangment : c.104+56625_c.1014-63MITFdel	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	162884	NA	0	14	10	15
P-0016295-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89623348	89624280	5-UTR of PTEN(+):878bp before coding start	Exon 1 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314)  rearrangment : c.-879_c.54PTENdel	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	932	NA	0	25	0	30
P-0016296-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864325	42867024	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):519bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1 with ERG exons 2-10) : c.40-46781:TMPRSS2_c.18+5962:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3002699	NA	0	25	10	25
P-0016296-T01-IM6	SOMATIC	GLYCTK	PBRM1	3	3	52327928	52702712	3-UTR of GLYCTK(+):4Kb after coding stop	Intron of PBRM1(-):51bp before exon 4	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement :  chr3:g.52327928_c.237-51:PBRM1dup	PRECISE		MANUAL_OK	5to3	-	374784	NA	0	8	10	9
P-0016306-T01-IM6	SOMATIC	RECQL4	ZNF251	8	8	145740481	145863362	Intron of RECQL4(-):25bp before exon 9	IGR: 83Kb before ZNF251(-)	GRCh37	DELETION	RECQL4 (NM_004260) rearrangement: c.1484-25_g.145863362del	PRECISE		MANUAL_OK	3to5	-	122881	NA	0	4	10	4
P-0016307-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	40033047	42872621	3-UTR of ERG(-):657bp after coding stop	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 with ERG exons 2-11) : c.56-2505:TMPRSS2_c.-150+535:ERGdel	PRECISE		MANUAL_OK	3to5	-	2839574	NA	0	87	10	98
P-0016308-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10265137	10302207	Exon 21 of DNMT1(-)	Intron of DNMT1(-):3Kb after exon 1	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1803_c.80+3289del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37070	NA	0	22	10	23
P-0016311-T01-IM6	SOMATIC	EWSR1	TRIOBP	22	22	29688160	38108998	Intron of EWSR1(+):2bp after exon 11	Intron of TRIOBP(+):218bp before exon 5	GRCh37	DUPLICATION	TRIOBP (NM_001039141) - EWSR1 (NM_013986) rearrangement: c.255-219:TRIOBP_c.1060+2:EWSR1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TRIOBP:EWSR1}	8420838	NA	0	4	10	7
P-0016313-T01-IM6	SOMATIC	BRAF	SLC45A3	7	1	140486608	205638452	Intron of BRAF(-):739bp after exon 9	5-UTR of SLC45A3(-):10Kb before coding start	GRCh37	TRANSLOCATION	SLC45A3 (NM_033102) - BRAF (NM_004333) fusion (SLC45A3 exons 1 fused to BRAF exons 10-18): t(1;7)(q32.1;q34)(chr1:g.205638452::chr7:g.140486608)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SLC45A3:BRAF}	0	NA	0	62	10	66
P-0016321-T01-IM6	SOMATIC	VPS9D1	FANCA	16	16	89771538	89858323	Promoter of VPS9D1(-):2Kb from tx start	Intron of FANCA(-):11bp after exon 13	GRCh37	DELETION	FANCA (NM_000135) - SPATA2L (NM_152339) rearrangement:  c.1225+12:FANCA_c.-3504:SPATA2Ldel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FANCA:VPS9D1}	86785	NA	0	42	10	43
P-0016325-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872831	42868979	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.126+1067:TMPRSS2_c.40-55287:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2996148	NA	0	28	10	28
P-0016326-T01-IM6	SOMATIC	TTC28	CHEK2	22	22	29067565	29115472	Intron of TTC28(-):8Kb after exon 1	Exon 5 of CHEK2(-)	GRCh37	INVERSION	CHEK2 (NM_007194) - TTC28 (NM_001145418) rearrangement: c.594:CHEK2_c.102+8045:TTC28inv	PRECISE		MANUAL_OK	3to3	-	47907	NA	0	50	10	50
P-0016346-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683915	128651008	Intron of EWSR1(+):679bp before exon 9	Intron of FLI1(+):844bp before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-8 fused with FLI1 exons 5-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128651008::chr22:g.29683915)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	11	0	11
P-0016358-T01-IM6	SOMATIC	TRAF7	BCL7C	16	16	2223748	30884849	Intron of TRAF7(+):40bp before exon 12	Intron of BCL7C(-):15Kb after exon 5	GRCh37	DUPLICATION	TRAF7 (NM_032271) Rearrangement : c.1087-41:TRAF7_chr16:g.30884849dup	PRECISE		MANUAL_OK	5to3	-	28661101	NA	0	21	10	21
P-0016374-T03-IM6	SOMATIC	NBN	RAD51AP2	8	2	90976577	17482587	Intron of NBN(-):60bp after exon 8	IGR: 209Kb before RAD51AP2(-)	GRCh37	TRANSLOCATION	NBN (NM_002485) rearrangement: t(2;8)(p24.2;q21.3)(chr2:g.17482587::chr8:g.90976577)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	38	10	42
P-0016377-T01-IM6	SOMATIC	POLD1	NDUFA3	19	19	50905302	54607080	Exon 5 of POLD1(+)	Intron of NDUFA3(+):584bp after exon 2	GRCh37	DUPLICATION	NDUFA3 (NM_004542) - POLD1 (NM_002691) rearrangement: c.85+584:NDUFA3_c.510:POLD1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NDUFA3:POLD1}	3701778	NA	0	3	10	5
P-0016378-T01-IM6	SOMATIC	BMP7	PPP4R2	20	3	55536538	73046268	IGR: 207Kb before BMP7(-)	Intron of PPP4R2(+):46bp after exon 1	GRCh37	TRANSLOCATION	PPP4R2 (NM_174907) rearrangement: t(3;20)(p13;q13.31)(chr3:g.73046268::chr20:g.55536538)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	12
P-0016386-T01-IM6	SOMATIC	TMPRSS2	CHST12	21	7	42872453	2452854	Intron of TMPRSS2(-):2Kb before exon 2	5-UTR of CHST12(+):19Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p22.3;q22.3)(chr7:g.2452854::chr21:g.42872453)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TMPRSS2:CHST12}	0	NA	0	29	10	46
P-0016386-T01-IM6	SOMATIC	TMPRSS2	KMT2C	21	7	42872510	151900703	Intron of TMPRSS2(-):2Kb before exon 2	Intron of KMT2C(-):554bp before exon 26	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - KMT2C (NM_170606) rearrangement: t(7;21)(q36.1;q22.3)(chr7:g.151900703::chr21:g.42872453)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	67	10	65
P-0016388-T01-IM6	SOMATIC	SH3GL2	DROSHA	9	5	17618123	31515314	Intron of SH3GL2(+):39Kb after exon 1	Exon 7 of DROSHA(-)	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;9)(p13.3;p22.2)(chr5:g.31515314::chr9:g.17618123)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	9	4
P-0016391-T01-IM6	SOMATIC	NTHL1	TSC2	16	16	2094918	2106247	Intron of NTHL1(-):117bp before exon 3	Intron of TSC2(+):2bp after exon 7	GRCh37	INVERSION	TSC2 (NM_000548) - NTHL1 (NM_002528) rearrangement: c.648+2:TSC2_c.379-117:NTHL1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TSC2:NTHL1}	11329	NA	0	35	10	39
P-0016396-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869161	42869249	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):796bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.126+797:TMPRSS2_c.18+1126:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3000088	NA	0	75	10	79
P-0016398-T01-IM6	SOMATIC	SPINT4	PTPRS	20	19	44361214	5214669	IGR: 10Kb before SPINT4(+)	Exon 29 of PTPRS(-)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(19;20)(p13.3;q13.12)(chr19:g.5214669::chr20:g.44361214)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	9	0	10
P-0016417-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683980	32414619	Intron of EWSR1(+):614bp before exon 9	Intron of WT1(-):318bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 1-8 exons fuses with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:g.32414619::chr22:g.29683980)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	9	10	9
P-0016430-T01-IM6	SOMATIC	MYOD1	ZBTB20	11	3	17741765	114684303	Exon 1 of MYOD1(+)	5-UTR of ZBTB20(-):626Kb before coding start	GRCh37	TRANSLOCATION	MYOD1 (NM_002478) - ZBTB20 (NM_001164342)  rearrangement: t(3;11)(q13.31;p15.1)(chr3:g.114684303::chr11:g.17741765)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MYOD1:ZBTB20}	0	NA	0	78	0	76
P-0016450-T01-IM6	SOMATIC	KAZN	SPEN	1	1	15374941	16254882	Intron of KAZN(+):4Kb after exon 4	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - KAZN (NM_201628) rearrangement: c.2147:SPEN_c.726+4286:KAZNdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:KAZN}	879941	NA	0	46	10	50
P-0016463-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151860388	151867651	Exon 43 of KMT2C(-)	Intron of KMT2C(-):697bp after exon 40	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.9453+698_c.10274dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7263	NA	0	8	10	9
P-0016468-T01-IM6	SOMATIC	SRCIN1	MAP3K14	17	17	36699037	43363880	Intron of SRCIN1(-):1Kb after exon 18	Exon 5 of MAP3K14(-)	GRCh37	DELETION	MAP3K14 (NM_003954) - SRCIN1 (NM_025248) rearrangement: c.1069:MAP3K14_c.3417+1021:SRCIN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAP3K14:SRCIN1}	6664843	NA	0	40	10	42
P-0016484-T02-IM6	SOMATIC	KIAA0141	CSF1R	5	5	141311745	149449605	Intron of KIAA0141(+):1Kb before exon 8	Exon 10 of CSF1R(-)	GRCh37	INVERSION	KIAA0141 (NM_014773) - CSF1R (NM_005211) rearrangement: c.755-1079:KIAA0141_c.1341:CSF1Rinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KIAA0141:CSF1R}	8137860	NA	0	3	9	3
P-0016490-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875050	42867669	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-57506:ERG_c.127-1164:TMPRSS2inv	IMPPRECISE		MANUAL_OK	3to3	-	2992619	NA	0	5	0	6
P-0016499-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46215187	46215775	Intron of ARID2(+):15bp before exon 6	Intron of ARID2(+):505bp after exon 6	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.638-16_c.705+505inv	PRECISE		MANUAL_OK	5to5	-	588	NA	0	9	10	9
P-0016504-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43961904	117650681	Intron of SDC4(-):195bp before exon 3	Intron of ROS1(-):72bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117650681::chr20:g.43961904)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	79	10	84
P-0016507-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88488820	12023709	Intron of NTRK3(-):5Kb before exon 15	Intron of ETV6(+):806bp after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12023709::chr15:g.88488820)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	118	10	117
P-0016507-T01-IM6	SOMATIC	CDK12	STAT5B	17	17	37672113	40354107	Intron of CDK12(+):52bp after exon 9	Intron of STAT5B(-):225bp before exon 19	GRCh37	DELETION	CDK12 (NM_016507) - STAT5B (NM_012448) rearrangement: c.2846+52:CDK12_c.2238-225:STAT5Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2681994	NA	0	43	10	46
P-0016515-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683757	32416207	Intron of EWSR1(+):634bp after exon 8	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion:  t(11;22)(p13;q12.2)(chr11:g.32416207::chr22:g.29683757)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	37	0	32
P-0016538-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39964209	42871996	3-UTR of ERG(-):69Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 2-11): c.56-1880:TMPRSS2_c.-149-7340:ERGdel	PRECISE		MANUAL_OK	3to5	-	2907787	NA	0	89	10	97
P-0016545-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56178735	56194663	Intron of MAP3K1(+):42bp after exon 14	Promoter of MAP3K1(+):84Kb from tx start	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.3666+42_c.*5156del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	15928	NA	0	19	10	21
P-0016548-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42856934	42871774	Intron of TMPRSS2(-):3Kb after exon 5	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-1658_c.556+3387inv	PRECISE		MANUAL_OK	3to3	-	14840	NA	0	95	10	95
P-0016548-T01-IM6	SOMATIC	TMPRSS2	RSL24D1	21	15	42876875	55490150	Intron of TMPRSS2(-):3Kb after exon 1	Promoter of RSL24D1(-):17Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q21.3;q22.3)(chr15:g.55490150::chr21:g.42876875)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	72	10	87
P-0016557-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138549766	140488576	Intron of KIAA1549(-):3Kb after exon 15	Intron of BRAF(-):1Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-15 fused in-frame to BRAF exons 9-18) : c.4929+2955:KIAA1549_c.1141-1192:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1938810	NA	0	2	10	1
P-0016563-T01-IM6	SOMATIC	NF1	MIR193B	17	16	29664922	14398973	Intron of NF1(+):24bp after exon 44	Promoter of MIR193B(+):1Kb from tx start	GRCh37	TRANSLOCATION	NF1 (NM_001042492)  rearrangement: t(16;17)(p13.12;q11.2)(chr16:g.14398973::chr17:g.29664922)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	7
P-0016564-T01-IM6	SOMATIC	JAK3	JAK3	19	19	17944583	17948613	Intron of JAK3(-):796bp after exon 17	Intron of JAK3(-):127bp after exon 12	GRCh37	DELETION	JAK3 (NM_000215) rearrangement: c.2350+797_c.1701+128del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	4030	NA	0	10	10	10
P-0016566-T01-IM6	SOMATIC	FLT3	LINC00423	13	13	28626776	33423491	Exon 5 of FLT3(-)	3-UTR of LINC00423(-):62Kb after coding stop	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.520_g.33423491del	PRECISE		MANUAL_OK	3to5	-	4796715	NA	0	3	10	5
P-0016567-T01-IM6	SOMATIC	KMT2D	SYNE1	12	6	49427392	152637900	Exon 39 of KMT2D(-)	Intron of SYNE1(-):83bp after exon 86	GRCh37	TRANSLOCATION	SYNE1 (NM_182961)  - KMT2D (NM_003482) rearrangement: t(6;12)(q25.2;q13.12)(chr8:g.96904156::chr21:g.42877101)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SYNE1:KMT2D}	0	NA	0	68	10	77
P-0016568-T01-IM6	SOMATIC	TP53	KDM6B	17	17	7573968	7755275	Exon 10 of TP53(-)	Exon 18 of KDM6B(+)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1059_g.7755275del	PRECISE		MANUAL_OK	3to5	-	181307	NA	0	12	10	12
P-0016570-T01-IM6	SOMATIC	KMT2B	ZNF569	19	19	36223348	37913327	Exon 28 of KMT2B(+)	Intron of ZNF569(-):3Kb after exon 5	GRCh37	DUPLICATION	KMT2B (NM_014727) rearrangement: c.5898_g.37913327dup	PRECISE		MANUAL_OK	5to3	-	1689979	NA	0	75	10	222
P-0016571-T01-IM6	SOMATIC	AGO2	PTK2	8	8	141551339	141741346	Exon 15 of AGO2(-)	Intron of PTK2(-):4Kb after exon 22	GRCh37	DELETION	PTK2 (NM_005607) - AGO2 (NM_012154) rearrangement: c.2096+4004:PTK2_c.1958:AGO2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PTK2:AGO2}	190007	NA	0	5	10	5
P-0016575-T01-IM6	SOMATIC	CDKN2A	TUSC1	9	9	21971259	25375257	Intron of CDKN2A(-):52bp before exon 2	IGR: 301Kb before TUSC1(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.151-52_chr9:g.25375257del	PRECISE		MANUAL_OK	3to5	-	3403998	NA	0	10	10	11
P-0016580-T01-IM6	SOMATIC	ALK	EML4	2	2	29447579	42524913	Intron of ALK(-):747bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+2257:EML4_c.3172+748:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077334	NA	0	102	10	102
P-0016582-T01-IM6	SOMATIC	ARID1A	YTHDF2	1	1	27092811	29059041	Exon 9 of ARID1A(+)	IGR: 4Kb before YTHDF2(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2832_chr1:g.29059041del	PRECISE		MANUAL_OK	3to5	-	1966230	NA	0	26	10	27
P-0016594-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42868628	42872891	Intron of TMPRSS2(-):1Kb after exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+1418_c.56-2775del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4263	NA	0	37	10	39
P-0016605-T01-IM6	SOMATIC	TMTC1	H3F3C	12	12	30188428	31944861	IGR: 535Kb before TMTC1(-)	Exon 1 of H3F3C(-)	GRCh37	DELETION	H3F3C (NM_001013699) rearrangement: g.30188428_c.240del	PRECISE		MANUAL_OK	3to5	-	1756433	NA	0	29	10	51
P-0016614-T01-IM6	SOMATIC	EP300	EP300	22	22	41533778	41556277	Exon 8 of EP300(+)	Intron of EP300(+):368bp before exon 20	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.1744_c.3591-369del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22499	NA	0	6	10	6
P-0016619-T01-IM6	SOMATIC	MED12	MED12	X	X	70341327	70353604	Intron of MED12(+):40bp after exon 6	Intron of MED12(+):542bp after exon 33	GRCh37	DUPLICATION	MED12 (NM_005120) rearrangement: c.846+40_c.4617+542dup	PRECISE		MANUAL_OK	5to3	Duplication of 27 exons : in frame	12277	NA	0	16	10	16
P-0016625-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52435020	52437687	3-UTR of BAP1(-):1Kb after coding stop	Exon 13 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.*1284_c.1474del	PRECISE		MANUAL_OK	3to5	-	2667	NA	0	12	10	12
P-0016625-T01-IM6	SOMATIC	TAP1	TAP1	6	6	32818967	32821124	Intron of TAP1(-):41bp before exon 4	Exon 1 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: c.1025-41_c.470del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2157	NA	0	23	10	23
P-0016627-T01-IM6	SOMATIC	MRE11A	TMPRSS5	11	11	94211999	113555650	Exon 6 of MRE11A(-)	Promoter of TMPRSS5(-):3Kb from tx start	GRCh37	INVERSION	MRE11A (NM_005591) rearrangement: c.446_g.113555650inv	PRECISE		MANUAL_OK	3to3	-	19343651	NA	0	258	10	252
P-0016627-T01-IM6	SOMATIC	GLI1	BRINP3	12	1	57857810	188655289	Exon 3 of GLI1(+)	IGR: 1Mb before BRINP3(-)	GRCh37	TRANSLOCATION	GLI1 (NM_005269)  rearrangement: t(1;12)(q31.1;q13.3)(chr1:g.188655289::chr12:g.57857810)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	102	10	101
P-0016627-T01-IM6	SOMATIC	FIGNL2	GLI1	12	12	52217795	57864084	5-UTR of FIGNL2(-):4Kb before coding start	Intron of GLI1(+):15bp before exon 12	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: g.52217795_c.1577-16del	PRECISE		MANUAL_OK	3to5	-	5646289	NA	0	65	10	69
P-0016627-T01-IM6	SOMATIC	PTPRD	ZNF733P	9	7	8517959	62328179	Exon 21 of PTPRD(-)	IGR: 423Kb before ZNF733P(-)	GRCh37	TRANSLOCATION	PTPRD (NM_002839)  rearrangement: t(7;9)(q11.21;p24.1)(chr7:g.62328179::chr9:g.8517959)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	10	16
P-0016642-T01-IM6	SOMATIC	TENM4	ATM	11	11	78443927	108124711	Intron of TENM4(-):305bp before exon 21	Exon 13 of ATM(+)	GRCh37	INVERSION	ATM (NM_000051) - TENM4 (NM_001098816) rearrangement : c.2069:ATM_c.2877-305:TENM4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATM:TENM4}	29680784	NA	0	52	10	52
P-0016643-T01-IM6	SOMATIC	TP53	TP53	17	17	7572418	7574101	3-UTR of TP53(-):508bp after coding stop	Intron of TP53(-):68bp before exon 10	GRCh37	INVERSION	TP53 (NM_000546)  rearrangement : chr17:g.7572418_c.994-68:TP53inv	PRECISE		MANUAL_OK	3to3	-	1683	NA	0	85	10	85
P-0016645-T01-IM6	SOMATIC	EWSR1	NFATC2	22	20	29686637	50134777	Intron of EWSR1(+):916bp before exon 10	Intron of NFATC2(-):1Kb before exon 3	GRCh37	TRANSLOCATION	Note: EWSR1 (NM_013986) - NFATC2 (NM_173091) fusion (EWSR1 exon1-9   NFATC2 exon3-10) : t(20;22)(q13.2;q12.2)(chr20:g.50134777::chr22:g.29686637)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:NFATC2}	0	NA	0	493	0	489
P-0016661-T01-IM6	SOMATIC	ERBB2	IKZF3	17	17	37883263	37926016	Intron of ERBB2(+):7bp after exon 25	Intron of IKZF3(-):3Kb before exon 7	GRCh37	DELETION	ERBB2 (NM_004448) - IKZF3 (NM_012481) rearrangement: c.3159+7:ERBB2_c.827-3270:IKZF3del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	42753	NA	0	13	10	13
P-0016684-T01-IM6	SOMATIC	MTOR	LINC01141	1	1	11288607	20713150	Intron of MTOR(-):117bp after exon 19	3-UTR of LINC01141(-):42Kb after coding stop	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.3030+118:MTOR_chr1:g.20713150inv	PRECISE		MANUAL_OK	5to5	-	9424543	NA	0	4	10	4
P-0016684-T01-IM6	SOMATIC	NEK10	TGFBR2	3	3	27252679	30713890	IGR: 4Kb before NEK10(-)	Exon 5 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: chr3:g.27252679_c.1290:TGFBR2	PRECISE		MANUAL_OK	3to5	-	3461211	NA	0	5	10	4
P-0016691-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55094109	55222051	Intron of EGFR(+):7Kb after exon 1	Intron of EGFR(+):206bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII deletion: c.88+7051_c.889+206del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	127942	NA	0	61	10	250
P-0016691-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55240797	55250714	Exon 17 of EGFR(+)	Intron of EGFR(+):2Kb after exon 20	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2041_.2469+1543del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9917	NA	0	5	10	5
P-0016692-T01-IM6	SOMATIC	CD79A	CIC	19	19	42385015	42777278	Exon 5 of CD79A(+)	IGR: 12Kb before CIC(+)	GRCh37	DELETION	CD79A (NM_001783) rearrangement: c.649:CD79A_chr19:g.42777278del	IMPPRECISE		MANUAL_OK	3to5	-	392263	NA	0	13	0	14
P-0016696-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27027986	27100876	Intron of ARID1A(+):4Kb after exon 1	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+3955_c.4158del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	72890	NA	0	6	10	6
P-0016697-T01-IM6	SOMATIC	PPFIA2	RAB35	12	12	82006157	120536546	Intron of PPFIA2(-):64Kb after exon 3	Intron of RAB35(-):68bp after exon 5	GRCh37	DELETION	RAB35 (NM_006861) - PPFIA2 (NM_003625) rearrangement: c.477+69:RAB35_c.303+64413:PPFIA2del	PRECISE		MANUAL_OK	3to5	-	38530389	NA	NA	41	10	NA
P-0016698-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860318	42872715	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2599:TMPRSS2_c.18+9969:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3012397	NA	0	11	10	10
P-0016700-T01-IM6	SOMATIC	NOTCH3	HAUS8	19	19	15296161	17176405	Exon 14 of NOTCH3(-)	Intron of HAUS8(-):3Kb before exon 4	GRCh37	INVERSION	NOTCH3 (NM_000435) - HAUS8 (NM_033417) rearrangement: c.2203:NOTCH3_c.148-2816:HAUS8inv	PRECISE		MANUAL_OK	3to3	-	1880244	NA	0	13	10	13
P-0016714-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63815640	63852547	Intron of ARID5B(+):1Kb before exon 6	Exon 10 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) Rearrangement : c.847-1236_c.3325del	PRECISE		MANUAL_OK	3to5	-	36907	NA	NA	10	10	NA
P-0016714-T01-IM6	SOMATIC	FAT1	LINC01262	4	4	187538386	190223782	Intron of FAT1(-):31bp before exon 11	IGR: 357Kb before LINC01262(+)	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement : c.8879-31:FAT1_chr4:g.190223782del	PRECISE		MANUAL_OK	3to5	-	2685396	NA	NA	7	10	NA
P-0016716-T01-IM6	SOMATIC	TERT	CLPTM1L	5	5	1295199	1345010	Promoter of TERT(-):42Kb from tx start	Promoter of CLPTM1L(-):27Kb from tx start	GRCh37	DELETION	TERT (NM_198253) - CLPTM1L (NM_030782) Rearrangement : c.-95:TERT_c.-54:CLPTM1Ldel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CLPTM1L:TERT}	49811	NA	0	3	10	3
P-0016724-T01-IM6	SOMATIC	FFAR2	KMT2B	19	19	35930466	36210583	IGR: 10Kb before FFAR2(+)	Intron of KMT2B(+):102bp before exon 3	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: g.35930466_c.437-103del	PRECISE		MANUAL_OK	3to5	-	280117	NA	0	15	10	16
P-0016733-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823695	42873910	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG fusion (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3794:TMRPSS2_c.19-6151:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3050215	NA	0	66	10	74
P-0016735-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737123	1808879	Intron of TACC3(+):71bp after exon 7	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 8-16): c.2311:FGFR3_c.1644+71:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71756	NA	0	84	10	97
P-0016746-T01-IM6	SOMATIC	AR	AR	X	X	66935482	66937337	Intron of AR(+):2Kb before exon 5	Exon 5 of AR(+)	GRCh37	INVERSION	AR (NM_000044)  Rearrangement : c.2174-1838_c.2191inv	PRECISE		MANUAL_OK	5to5	-	1855	NA	0	17	10	17
P-0016747-T01-IM6	SOMATIC	ROS1	MIR5695	6	6	117646784	126400977	Intron of ROS1(-):602bp after exon 33	IGR: 33Kb before MIR5695(-)	GRCh37	DELETION	ROS1 (NM_002944) Rearrangement : c.5557+603:ROS1_chr6:g.126400977del	PRECISE		MANUAL_OK	3to5	-	8754193	NA	0	26	10	28
P-0016751-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57487958	57493332	Intron of NAB2(+):436bp before exon 7	Intron of STAT6(-):109bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 16-22): c.1469-437:NAB2_c.1745-109:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5374	NA	0	13	10	13
P-0016763-T01-IM6	SOMATIC	TJP1	MGA	15	15	29907619	42040979	IGR: 84Kb before TJP1(-)	Exon 16 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement : g.29907619_c.5357:MGAinv	PRECISE		MANUAL_OK	5to5	-	12133360	NA	0	44	10	72
P-0016776-T01-IM6	SOMATIC	NF1	RAB11FIP4	17	17	29509605	29733138	Exon 8 of NF1(+)	Intron of RAB11FIP4(+):14Kb after exon 1	GRCh37	DELETION	NF1 (NM_001042492) - RAB11FIP4 (NM_032932) rearrangement: c.810:NF1_c.159+14109:RAB11FIP4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:RAB11FIP4}	223533	NA	0	47	10	50
P-0016777-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1919240	1961438	Intron of WHSC1(+):476bp after exon 4	Exon 17 of WHSC1(+)	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.927+476_c.3226dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	42198	NA	0	68	10	75
P-0016785-T01-IM6	SOMATIC	STK11	STXBP2	19	19	1218399	7708193	Intron of STK11(+):16bp before exon 2	Intron of STXBP2(+):62bp after exon 13	GRCh37	DUPLICATION	STXBP2 (NM_006949) - STK11 (NM_000455)  rearrangement: c.1107+62:STXBP2_c.291-17:STK11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {STXBP2:STK11}	6489794	NA	0	24	10	26
P-0016785-T01-IM6	SOMATIC	MST1R	SCHIP1	3	3	49933281	159356211	Exon 12 of MST1R(-)	Intron of SCHIP1(+):126Kb before exon 2	GRCh37	DELETION	MST1R (NM_002447) - IQCJ-SCHIP1 (NM_001197113) rearrangement: c.2829:MST1R_c.292-12602:IQCJ-SCHIP1del	PRECISE		MANUAL_OK	3to5	-	109422930	NA	0	34	10	35
P-0016792-T01-IM6	SOMATIC	STK11	STK11	19	19	1205213	1220690	Promoter of STK11(+):584bp from tx start	Exon 5 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) Rearrangement : c.-1700_c.708del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15477	NA	0	15	10	16
P-0016795-T01-IM6	SOMATIC	KIT	KIT	4	4	55576694	55602832	Intron of KIT(+):989bp after exon 7	Intron of KIT(+):54bp before exon 19	GRCh37	DUPLICATION	KIT (NM_000222) Rearrangement : c.1231+989_2597-55dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : in frame	26138	NA	0	18	10	18
P-0016795-T01-IM6	SOMATIC	DDC	EGFR	7	7	50601499	55222204	Intron of DDC(-):4Kb after exon 4	Intron of EGFR(+):359bp after exon 7	GRCh37	INVERSION	DDC (NM_000790) - EGFR (NM_005228) Rearrangement : c.435+4059:DDC_c.889+359:EGFRinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {DDC:EGFR}	4620705	NA	0	82	10	112
P-0016806-T01-IM6	SOMATIC	CCND3	UBR2	6	6	41908366	42639033	Intron of CCND3(-):43bp before exon 2	Intron of UBR2(+):580bp after exon 36	GRCh37	DELETION	CCND3 (NM_001760) rearrangement: c.199-43:CCND3_g.42639033del	PRECISE		MANUAL_OK	3to5	-	730667	NA	0	42	10	45
P-0016806-T01-IM6	SOMATIC	GRIK2	ARID1B	6	6	102788017	157520183	IGR: 941Kb before GRIK2(+)	Intron of ARID1B(+):142bp after exon 17	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: g.102788017_c.4110+142:ARID1Binv	PRECISE		MANUAL_OK	3to3	-	54732166	NA	0	4	7	4
P-0016806-T01-IM6	SOMATIC	NOTCH1	LCN8	9	9	139391520	139647469	Exon 34 of NOTCH1(-)	Promoter of LCN8(-):1Kb from tx start	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.6671:NOTCH1_g.139647469dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH1:LCN8}	255949	NA	0	7	10	7
P-0016807-T01-IM6	SOMATIC	C16orf72	KMT2D	16	12	9209176	49444705	Intron of C16orf72(+):1Kb before exon 4	Exon 10 of KMT2D(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(12;16)(q13.12;p13.2)(chr12:g.49444705::chr16:g.9209176)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	24	10	24
P-0016809-T01-IM6	SOMATIC	RB1	RB1	13	13	48952621	48954145	Intron of RB1(+):1Kb before exon 14	Intron of RB1(+):43bp before exon 15	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1333-1109_c.1390-44del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1524	NA	0	12	10	12
P-0016809-T01-IM6	SOMATIC	GPR1-AS	IDH1	2	2	207074689	209113139	5-UTR of GPR1-AS(+):56Kb before coding start	Exon 4 of IDH1(-)	GRCh37	INVERSION	IDH1 (NM_005896) rearrangement: g.207074689_c.368:IDH1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IDH1:GPR1-AS}	2038450	NA	0	3	6	4
P-0016811-T01-IM6	SOMATIC	ETV6	BCL2L14	12	12	12034450	12146364	Intron of ETV6(+):3Kb before exon 6	IGR: 78Kb before BCL2L14(+)	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.1010-2929_chr12:g.12146364dup	PRECISE		MANUAL_OK	5to3	-	111914	NA	0	7	10	7
P-0016812-T01-IM6	SOMATIC	RET	RET	10	10	43608847	43610561	Intron of RET(+):156bp before exon 10	Intron of RET(+):377bp after exon 11	GRCh37	INVERSION	RET (NM_020975) rearrangement : c.1760-157_c.2136+377inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1714	NA	0	5	10	4
P-0016812-T01-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42867167	41623968	Intron of TMPRSS2(-):662bp before exon 3	Promoter of ETV4(-):19Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV4 (NM_001986) rearrangement : t(17;21)(q21.31;q22.3)(chr17:g.41623968::chr21:g.42867167)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TMPRSS2:ETV4}	0	NA	0	40	10	41
P-0016815-T01-IM6	SOMATIC	LOC100287592	MAP3K1	5	5	50161653	56179533	IGR: 103Kb before LOC100287592(-)	Intron of MAP3K1(+):27bp after exon 15	GRCh37	INVERSION	MAP3K1 (NM_005921) rearrangement: g.50161653_c.3819+27:MAP3K1inv	PRECISE		MANUAL_OK	3to3	-	6017880	NA	0	14	10	12
P-0016815-T01-IM6	SOMATIC	SNX9	PARK2	6	6	158228249	161969802	IGR: 16Kb before SNX9(+)	Intron of PARK2(-):83bp after exon 9	GRCh37	INVERSION	PARK2 (NM_004562) rearrangement: g.158228249_c.1083+84:PARK2inv	PRECISE		MANUAL_OK	5to5	-	3741553	NA	0	6	10	6
P-0016820-T01-IM6	SOMATIC	ACVR1	ACVR1	2	2	158626916	158633513	Exon 7 of ACVR1(-)	Intron of ACVR1(-):1Kb after exon 5	GRCh37	DUPLICATION	ACVR1 (NM_001111067) Rearrangement : c.543+1130_754dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6597	NA	0	24	10	25
P-0016836-T01-IM6	SOMATIC	ODF3L2	BRD4	19	19	475610	15364474	Promoter of ODF3L2(-):12Kb from tx start	Intron of BRD4(-):488bp after exon 11	GRCh37	DUPLICATION	ODF3L2 (NM_182577) - BRD4 (NM_058243) rearrangement: c.-863:ODF3L2_c.2158+489:BRD4dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {ODF3L2:BRD4}	14888864	NA	0	22	10	24
P-0016838-T01-IM6	SOMATIC	COX7A1	ETV6	19	12	36644129	12018950	Promoter of COX7A1(-):2Kb from tx start	Intron of ETV6(+):3Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - COX7A1 (NM_001864) rearrangement: t(12;19)(p13.2;q13.12)(chr12:g.12018950::chr19:g.36644129)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	15
P-0016842-T01-IM6	SOMATIC	CLIC4	CSF3R	1	1	25041917	36933611	IGR: 30Kb before CLIC4(+)	Intron of CSF3R(-):48bp before exon 14	GRCh37	DELETION	CSF3R (NM_000760) rearrangement: c.1724-48_chr1:g.25041917del	PRECISE		MANUAL_OK	3to5	-	11891694	NA	0	14	10	15
P-0016849-T01-IM6	SOMATIC	CASQ2	FAM46C	1	1	116281889	118166180	Intron of CASQ2(-):933bp before exon 4	Exon 2 of FAM46C(+)	GRCh37	DELETION	FAM46C (NM_017709) - CASQ2 (NM_001232) rearrangement: c.690:FAM46C_c.421-933:CASQ2del	PRECISE		MANUAL_OK	3to5	-	1884291	NA	0	98	10	118
P-0016877-T01-IM6	SOMATIC	TMPRSS2	NSUN4	21	1	42866769	46831834	Intron of TMPRSS2(-):264bp before exon 3	Promoter of NSUN4(+):26Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(p33;q22.3)(chr1:g.46831834::chr21:g.42866769)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NSUN4:TMPRSS2}	0	NA	0	14	10	13
P-0016883-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39958056	42871231	3-UTR of ERG(-):76Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG(NM_004449) Rearrangement : c.56-1115:TMPRSS2_c.-149-1187:ERGdel	PRECISE		MANUAL_OK	3to5	-	2913175	NA	0	108	10	116
P-0016895-T01-IM6	SOMATIC	EZH1	FGF14	17	13	40876400	102490730	Exon 5 of EZH1(-)	Intron of FGF14(-):30Kb after exon 3	GRCh37	TRANSLOCATION	EZH1 (NM_001991) - FGF14 (NM_175929) Rearrangement : t(13;17)(q33.1;q21.2)(chr13:g.102490730::chr17:g.40876400)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EZH1:FGF14}	0	NA	0	24	10	24
P-0016895-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831327	42873673	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10) : c.56-3557:TMPRSS2_c.19-13783:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3042346	NA	0	30	10	30
P-0016899-T01-IM6	SOMATIC	WISP3	ROS1	6	6	112237905	117645775	IGR: 137Kb before WISP3(+)	Intron of ROS1(-):197bp before exon 34	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5558-197:ROS1_chr6:g.112237905inv	PRECISE		MANUAL_OK	5to5	-	5407870	NA	0	32	10	48
P-0016910-T01-IM6	SOMATIC	FBRSL1	POLE	12	12	132997799	133225532	IGR: 69Kb before FBRSL1(+)	Exon 32 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.4132:POLE_chr12:g.132997799inv	PRECISE		MANUAL_OK	3to3	-	227733	NA	0	63	10	61
P-0016911-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140482518	140542217	Intron of BRAF(-):302bp after exon 10	Intron of BRAF(-):8Kb before exon 3	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1314+303_c.241-7545del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	59699	NA	0	63	10	68
P-0016912-T01-IM6	SOMATIC	LLGL1	NF1	17	17	18127933	29653348	Promoter of LLGL1(+):1Kb from tx start	Intron of NF1(+):78bp after exon 37	GRCh37	DUPLICATION	NF1 (NM_001042492) - LLGL1 (NM_004140) rearrangement: c.5268+78:NF1_c.-1064: LLGL1dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {NF1:LLGL1}	11525415	NA	0	6	10	6
P-0016912-T01-IM6	SOMATIC	PHB	SPOP	17	17	47502627	47688854	IGR: 21Kb before PHB(-)	Intron of SPOP(-):35bp before exon 6	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: g.47502627_c.481-35:SPOPinv	PRECISE		MANUAL_OK	3to3	-	186227	NA	0	11	10	11
P-0016918-T01-IM6	SOMATIC	TP53	TP53	17	17	7578359	7580883	Intron of TP53(-):11bp after exon 5	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.559+12_c.-28-943del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2524	NA	0	29	10	29
P-0016918-T01-IM6	SOMATIC	DSP	IDH1	6	2	7516920	209103793	IGR: 25Kb before DSP(+)	Intron of IDH1(-):1bp after exon 9	GRCh37	TRANSLOCATION	IDH1 (NM_005896)  rearrangement: t(2;6)(q34;p24.3)(chr2:g.209103793::chr6:g.7516920)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	9
P-0016931-T01-IM6	SOMATIC	MUT	SF3B1	6	2	49140896	198269780	IGR: 257Kb before MUT(-)	Intron of SF3B1(-):19bp after exon 11	GRCh37	TRANSLOCATION	SF3B1 (NM_012433) Rearrangement : t(2,6)(q33.1,p12.3)(chr2:g.198269780::chr6:g.49140896)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	38	10	38
P-0016933-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876438	42875065	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.55+4812:TMPRSS2_c.40-58894:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2998627	NA	0	21	10	24
P-0016941-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15938318	15949778	Intron of NCOR1(-):60bp before exon 45	Intron of NCOR1(-):486bp after exon 42	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.6956-60_c.6679+487inv	PRECISE		MANUAL_OK	3to3	-	11460	NA	0	4	8	4
P-0016941-T01-IM6	SOMATIC	KMT2C	PTPRN2	7	7	151836036	158185790	Intron of KMT2C(-):47bp before exon 58	Intron of PTPRN2(-):76Kb before exon 3	GRCh37	DELETION	PTPRN2 (NM_002847) - KMT2C (NM_170606) rearrangement: c.164-76166: PTPRN2_c.14535-47: KMT2Cdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PTPRN2:KMT2C}	6349754	NA	0	28	10	29
P-0016946-T01-IM6	SOMATIC	ZSWIM7	NCOR1	17	17	15887497	15964993	Intron of ZSWIM7(-):3Kb before exon 4	Exon 37 of NCOR1(-)	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement : g.15887497_c.5603:NCOR1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	77496	NA	0	8	10	13
P-0016946-T01-IM6	SOMATIC	AXIN2	ENGASE	17	17	63533998	77075798	Intron of AXIN2(-):45bp before exon 6	Intron of ENGASE(+):79bp after exon 4	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement : c.1201-45: AXIN2_g.77075798del	PRECISE		MANUAL_OK	3to5	-	13541800	NA	0	8	10	8
P-0016946-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2974229	3011314	Exon 10 of CARD11(-)	5-UTR of CARD11(-):65Kb before coding start	GRCh37	DELETION	CARD11 (NM_032415) rearrangement : c.1376_c.-125-13049del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37085	NA	0	3	10	6
P-0016958-T01-IM6	SOMATIC	CBL	ZNF691	11	1	119077286	43315081	Exon 1 of CBL(+)	5-UTR of ZNF691(+):248bp before coding start	GRCh37	TRANSLOCATION	ZNF691 (NM_015911) - CBL (NM_00518) rearrangement: t(1;11)(p34.2;q23.3)(chr1:g.43315081::chr11:g.119077286)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	70	10	129
P-0016960-T01-IM6	SOMATIC	ALK	EML4	2	2	29447838	42499324	Intron of ALK(-):488bp after exon 19	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7453:EML4_c.3172+489:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13051486	NA	0	69	10	70
P-0016968-T01-IM6	SOMATIC	PRDM14	MIR4436A	8	2	70981692	89832919	Exon 2 of PRDM14(-)	IGR: 721Kb before MIR4436A(+)	GRCh37	TRANSLOCATION	PRDM14 (NM_024504) rearrangement: t(2;8)(p11.2;q13.3)(chr2:g.89832919::chr8:g.70981692)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0016973-T01-IM6	SOMATIC	INSR	GREB1L	19	18	7117210	18934293	Exon 22 of INSR(-)	5-UTR of GREB1L(+):29Kb before coding start	GRCh37	TRANSLOCATION	INSR (NM_000208)rearrangement: t(18;19)(q11.1;p13.2)(chr18:g.18934293::chr19:g.7117210)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	21	10	22
P-0016982-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189057	55223404	Intron of EGFR(+):21Kb before exon 2	Intron of EGFR(+):118bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.89-20922_c.890-119del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	34347	NA	0	84	10	97
P-0016983-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39832975	42867872	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG fusion (NM_182918) fusion (TMPRSS2 exon 1-2 fused to ERG exons 2-10): c.127-1367:TMRPSS2_c.19-15431:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3034897	NA	0	14	10	14
P-0016985-T01-IM6	SOMATIC	FOXO1	LINC00443	13	13	41134512	107386743	Exon 2 of FOXO1(-)	IGR: 81Kb before LINC00443(+)	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement : c.1116:FOXO1_g.107386743inv	PRECISE		MANUAL_OK	3to3	-	66252231	NA	0	30	10	30
P-0016985-T01-IM6	SOMATIC	FLCN	TDH	17	8	17122551	11209119	Intron of FLCN(-):28bp before exon 9	5-UTR of TDH(+):17Kb before coding start	GRCh37	TRANSLOCATION	FLCN (NM_144997) rearrangement: t(8;17)(p23.1;p11.2)(chr8:g.11209119::chr17:g.17122551)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	44	10	46
P-0016989-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737319	1808718	Intron of TACC3(+):138bp before exon 8	Intron of FGFR3(+):57bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 8-16): c.2274+57:FGFR3_c.1645-139:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71399	NA	0	119	10	133
P-0016991-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35871767	35874901	Exon 5 of NFKBIA(-)	Promoter of NFKBIA(-):4Kb from tx start	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.739_c.-1051del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3134	NA	0	3	10	3
P-0016991-T02-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35871767	35874901	Exon 5 of NFKBIA(-)	Promoter of NFKBIA(-):4Kb from tx start	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.739_c.-1051del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3134	NA	0	13	10	13
P-0017011-T01-IM6	SOMATIC	PAX8	CCDC141	2	2	113981389	179838736	Intron of PAX8(-):3Kb after exon 10	Intron of CCDC141(-):1Kb after exon 4	GRCh37	DUPLICATION	PAX8 (NM_003466) - CCDC141 (NM_173648) Rearrangement : c.1189+3343:PAX8_c.526+1048:CCDC141dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PAX8:CCDC141}	65857347	NA	0	9	10	9
P-0017011-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139377731	139397456	5-UTR of SEC16A(-):42Kb before coding start	Intron of NOTCH1(-):177bp after exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) Rearrangement : c.-533:SEC16A_c.5167+178:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {SEC16A:NOTCH1}	19725	NA	0	11	10	12
P-0017020-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117661744	117663937	Intron of ROS1(-):553bp after exon 30	Intron of ROS1(-):230bp before exon 28	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.4525-230_c.5079+554del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2193	NA	0	7	10	7
P-0017027-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684426	128646363	Intron of EWSR1(+):168bp before exon 9	Intron of FLI1(+):3Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused in-frame with FLI1 exons 5-9): t(11;22)(q24.3;q12.2)(chr11:g.128646363::chr22:g.29684426)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	39	10	54
P-0017031-T01-IM6	SOMATIC	TP53BP1	WDR72	15	15	43767945	53843592	Intron of TP53BP1(-):53bp before exon 9	Intron of WDR72(-):28Kb before exon 19	GRCh37	DELETION	WDR72 (NM_182758) - TP53BP1 (NM_001141980) rearrangement: c.3149-28073:WDR72_c.956-53:TP53BP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {WDR72:TP53BP1}	10075647	NA	0	3	10	3
P-0017031-T01-IM6	SOMATIC	MT1H	NUP93	16	16	56702977	56839602	Promoter of MT1H(+):748bp from tx start	Intron of NUP93(+):58bp after exon 5	GRCh37	DUPLICATION	NUP93 (NM_014669) - MT1H (NM_005951) rearrangement: c.489+58:NUP93_c.-820:MT1Hdup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {NUP93:MT1H}	136625	NA	0	7	10	7
P-0017035-T01-IM6	SOMATIC	PTPRS	CENPW	19	6	5208512	126811782	Intron of PTPRS(-):110bp before exon 36	IGR: 151Kb before CENPW(+)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(6;19)(q22.32;p13.3)(chr6:g.126811782::chr19:g.5208512)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	49	10	53
P-0017043-T01-IM6	SOMATIC	FAM177A1	NFKBIA	14	14	35505911	35871816	IGR: 8Kb before FAM177A1(+)	Exon 5 of NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: chr14:g.35505911_c.690:NFKBIAdel	PRECISE		MANUAL_OK	3to5	-	365905	NA	0	19	10	57
P-0017051-T01-IM6	SOMATIC	KMT2C	PAXIP1-AS2	7	7	151845376	154725568	Exon 52 of KMT2C(-)	5-UTR of PAXIP1-AS2(+):13Kb before coding start	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.13636:KMT2C_chr7:g.154725568inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PAXIP1-AS2:KMT2C}	2880192	NA	0	11	10	11
P-0017056-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1740310	1808671	Intron of TACC3(+):881bp after exon 10	Intron of FGFR3(+):10bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused in-frame with TACC3 exons 11-16): c.2274+10:FGFR3_c.1941+881:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68361	NA	0	960	10	1882
P-0017065-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859899	42871083	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):967bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG Fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-967:TMPRSS2_c.40-42355:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011184	NA	0	34	10	37
P-0017067-T01-IM6	SOMATIC	RARA	LINC00910	17	17	38504641	41463829	Exon 3 of RARA(+)	3-UTR of LINC00910(-):2Kb after coding stop	GRCh37	INVERSION	RARA (NM_000964) Rearrangement : c.252:RARA_chr17:g.41463829inv	PRECISE		MANUAL_OK	3to3	-	2959188	NA	0	11	10	11
P-0017163-T01-IM6	SOMATIC	MDC1	MUC22	6	6	30680878	30998412	Exon 5 of MDC1(-)	Intron of MUC22(+):535bp after exon 3	GRCh37	DUPLICATION	MDC1 (NM_014641) Rearrangement : c.841:MDC1_c.4669+535:MUC22dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	317534	NA	0	33	10	33
P-0017164-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31024810	31025565	Exon 12 of ASXL1(+)	3-UTR of ASXL1(+):79Kb after coding stop	GRCh37	DELETION	ASXL1 (NM_015338) Rearrangement : c.4295_c.*424del	IMPPRECISE		MANUAL_OK	3to5	-	755	NA	0	25	0	26
P-0017165-T01-IM6	SOMATIC	EWSR1	FEV	22	2	29683402	219849111	Intron of EWSR1(+):279bp after exon 8	Intron of FEV(-):84bp before exon 2	GRCh37	TRANSLOCATION	FEV (NM_017521) - EWSR1 (NM_013986) Rearrangement :  t(2;22)(q35; q12.2)(chr2:g.219849111::chr22:g.29683402)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FEV:EWSR1}	0	NA	0	14	10	15
P-0017167-T01-IM6	SOMATIC	MCL1	ENSA	1	1	150550843	150598135	Exon 2 of MCL1(-)	Exon 4 of ENSA(-)	GRCh37	DUPLICATION	MCL1 (NM_021960) - ENSA (NM_004436) rearrangement: c.813: MCL1_c.333: ENSAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MCL1:ENSA}	47292	NA	0	31	10	44
P-0017168-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834926	42868343	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) fusion (TMPRSS2 exon 1-2 with ERG exons 2-10) : c.126+1703:TMPRSS2_c.19-17382:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3033417	NA	0	43	10	45
P-0017176-T01-IM6	SOMATIC	DROSHA	C5orf22	5	5	31508945	31625311	Intron of DROSHA(-):63bp before exon 9	IGR: 93Kb before C5orf22(+)	GRCh37	INVERSION	DROSHA (NM_013235) rearrangement : c.1433-63: DROSHA_g.31625311inv	IMPPRECISE		MANUAL_OK	3to3	-	116366	NA	0	5	0	5
P-0017199-T01-IM6	SOMATIC	KDM5C	IQSEC2	X	X	53222598	53281526	Intron of KDM5C(-):20bp after exon 25	Intron of IQSEC2(-):1Kb before exon 5	GRCh37	DUPLICATION	KDM5C (NM_004187) - IQSEC2 (NM_001111125) rearrangement: c.4317+21: KDM5C_c.1402-1170:IQSEC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KDM5C:IQSEC2}	58928	NA	0	9	10	9
P-0017211-T01-IM6	SOMATIC	XIAP	LINC00308	X	21	123025242	23711243	Intron of XIAP(+):76bp after exon 4	IGR: 240Kb before LINC00308(+)	GRCh37	TRANSLOCATION	XIAP (NM_001167) rearrangement: t(X;21)(q25;q21.1)(chrX:g.123025242::chr21:g.23711243)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	39	10	45
P-0017214-T01-IM6	SOMATIC	KIF5B	RET	10	10	32306314	43610647	Intron of KIF5B(-):27bp before exon 24	Intron of RET(+):463bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-23 fused in-frame with RET exons 12-20): c.2545-27:KIF5B_c.2136+463:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11304333	NA	0	6	10	7
P-0017224-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11143148	11145772	Intron of SMARCA4(+):817bp before exon 26	Exon 29 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3547-818_c.4134del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2624	NA	0	19	10	21
P-0017224-T01-IM6	SOMATIC	CDKN2Ap14ARF	FAM205A	9	9	21968576	34756956	Intron of CDKN2A(-):335bp before exon 3	IGR: 34Kb before FAM205A(-)	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement : c.*102-335:CDKN2Ap14ARF_g.34756956inv	PRECISE		MANUAL_OK	5to5	-	12788380	NA	NA	14	10	NA
P-0017224-T01-IM6	SOMATIC	CDKN2Ap16INK4A	FAM205A	9	9	21968576	34756956	Intron of CDKN2A(-):335bp before exon 3	IGR: 34Kb before FAM205A(-)	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.458-335:CDKN2Ap16INK4A_g.34756956inv	PRECISE		MANUAL_OK	5to5	-	12788380	NA	0	14	10	14
P-0017225-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683195	128665968	Intron of EWSR1(+):72bp after exon 8	Intron of FLI1(+):9Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128665968::chr22:g.29683195)	PRECISE		MANUAL_OK	3to5	-	0	NA	NA	60	87	NA
P-0017233-T01-IM6	SOMATIC	ARSB	RASA1	5	5	78016439	86626760	IGR: 57Kb before ARSB(-)	Intron of RASA1(+):404bp before exon 2	GRCh37	INVERSION	RASA1 (NM_002890) rearrangement : g.78016439_c.540-405:RASA1inv	PRECISE		MANUAL_OK	5to5	-	8610321	NA	0	6	10	6
P-0017235-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885215	42874411	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1-2 with ERG exon 4-11) : c.56-4295:TMPRSS2_c.39+62371:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2989196	NA	0	40	10	44
P-0017245-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39805081	42876604	Intron of ERG(-):10Kb before exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon3) : c.55+3273:TMPRSS2_c.237-9598:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3071523	NA	0	5	10	5
P-0017262-T01-IM6	SOMATIC	CHRNA5	SUFU	15	10	78876527	104359393	Intron of CHRNA5(+):2Kb before exon 3	Intron of SUFU(+):92bp after exon 8	GRCh37	TRANSLOCATION	SUFU (NM_016169) - CHRNA5 (NM_000745) rearrangement: t(10;15)(q24.32;q25.1)(chr10:g.104359393::chr15:g.78876527)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SUFU:CHRNA5}	0	NA	0	8	10	8
P-0017262-T01-IM6	SOMATIC	PTPRS	FAM227B	19	15	5216740	49718958	Exon 26 of PTPRS(-)	Intron of FAM227B(-):55Kb before exon 12	GRCh37	TRANSLOCATION	PTPRS (NM_00285) - FAM227B (NM_152647) rearrangement: t(15;19)(q21.2;p13.3)(chr15:g.49718958::chr19:g.5216740)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PTPRS:FAM227B}	0	NA	0	45	10	47
P-0017262-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866100	42868297	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1749:TMPRSS2_c.18+4187:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3002197	NA	0	3	10	19
P-0017262-T01-IM6	SOMATIC	SSTR3	MGA	22	15	37609650	42042118	Promoter of SSTR3(-):9Kb from tx start	Exon 17 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(15;22)(q15.1;q13.1)(chr15:g.42042118::chr22:g.37609650)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MGA:SSTR3}	0	NA	0	51	10	49
P-0017265-T01-IM6	SOMATIC	TP53	TP53	17	17	7571254	7572950	Promoter of TP53(-):465bp from tx start	Exon 11 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1159_c.*1673del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1696	NA	0	19	10	21
P-0017266-T01-IM6	SOMATIC	ANKRD11	GLYCTK	16	3	89351351	52316053	Exon 9 of ANKRD11(-)	IGR: 6Kb before GLYCTK(+)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(3;16)(p21.1;q24.3)(chr3:g.52316053::chr16:g.89351351)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	38	10	38
P-0017266-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47147499	47149436	Exon 6 of SETD2(-)	Intron of SETD2(-):2Kb before exon 6	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.4827_c.4716-1826del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1937	NA	0	3	10	3
P-0017284-T02-IM5	SOMATIC	NTNG1	NOTCH2	1	1	108019818	120483019	Intron of NTNG1(+):3Kb before exon 6	Intron of NOTCH2(-):158bp after exon 19	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: chr1:g.108019818_c.3183+159:NOTCH2del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	12463201	NA	0	3	9	3
P-0017288-T01-IM6	SOMATIC	PTPRS	ZNF625	19	19	5218881	12267035	Intron of PTPRS(-):72bp before exon 24	Intron of ZNF625(-):335bp after exon 1	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.3924-72:PTPRS_chr19:g.12267035inv	PRECISE		MANUAL_OK	3to3	-	7048154	NA	0	19	10	19
P-0017288-T01-IM6	SOMATIC	KEAP1	CACNA1A	19	19	10600263	13557447	Intron of KEAP1(-):60bp after exon 4	Intron of CACNA1A(-):6Kb after exon 3	GRCh37	INVERSION	KEAP1 (NM_203500) rearrangement: c.1531+61:KEAP1_chr19:g.13557447inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2957184	NA	0	21	10	24
P-0017292-T01-IM6	SOMATIC	ZNF563	CALR	19	19	12433668	13051599	Intron of ZNF563(-):143bp before exon 2	Exon 7 of CALR(+)	GRCh37	DELETION	CALR (NM_004343) rearrangement: chr19:g.12433668_c.858:CALRdel	PRECISE		MANUAL_OK	3to5	-	617931	NA	0	21	10	23
P-0017297-T01-IM6	SOMATIC	MGA	MGA	15	15	42045490	42046741	Intron of MGA(+):1Kb before exon 18	Exon 18 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.7009-1145_c.7115del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1251	NA	0	7	10	8
P-0017298-T01-IM6	SOMATIC	TSNARE1	RECQL4	8	8	143348789	145740822	Intron of TSNARE1(-):7Kb after exon 12	Exon 7 of RECQL4(-)	GRCh37	DUPLICATION	TSNARE1 (NM_145003) - RECQL4 (NM_004260) rearrangement: c.1446+7353:TSNARE1_c.1278:RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSNARE1:RECQL4}	2392033	NA	0	27	10	29
P-0017305-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55138910	55139775	Intron of PDGFRA(+):223bp after exon 9	Exon 10 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1364+389_c.1438del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	865	NA	0	35	0	361
P-0017309-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1806362	1808713	Intron of FGFR3(+):115bp after exon 9	Intron of FGFR3(+):52bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) Rearrangement : c.1266+115_c.2274+52dup	PRECISE		MANUAL_OK	5to3	-	2351	NA	NA	58	10	NA
P-0017310-T01-IM6	SOMATIC	ZNF598	TSC2	16	16	2050510	2108734	Intron of ZNF598(-):28bp before exon 10	Intron of TSC2(+):13bp before exon 10	GRCh37	INVERSION	ZNF598 (NM_178167) -TSC2 (NM_000548) Rearrangement : c.1204-28:ZNF598_c.849-14:TSC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ZNF598:TSC2}	58224	NA	0	17	10	23
P-0017312-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862482	42868523	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 with ERG exon 2) : c.126+1523:TMPRSS2_c.18+7805:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3006041	NA	0	45	10	49
P-0017316-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56177814	56181387	Exon 14 of MAP3K1(+)	Intron of MAP3K1(+):371bp before exon 17	GRCh37	DUPLICATION	MAP3K1 (NM_005921) Rearrangement :  c.2787_c.3983-372dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3573	NA	0	17	10	18
P-0017317-T01-IM6	SOMATIC	HIST1H3C	HIST1H3C	6	6	26044924	26045640	Promoter of HIST1H3C(+):714bp from tx start	Exon 1 of HIST1H3C(+)	GRCh37	DELETION	HIST1H3C (NM_003531) Rearrangement : c.-715_c.2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	716	NA	0	27	10	30
P-0017325-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43963860	117654375	Intron of SDC4(-):561bp after exon 2	Intron of ROS1(-):4Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused in-frame to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117654375::chr20:g.43963860)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	10	10	9
P-0017325-T01-IM6	SOMATIC	OSGIN2	NBN	8	8	90932931	90976557	Intron of OSGIN2(+):376bp before exon 5	Intron of NBN(-):80bp after exon 8	GRCh37	DELETION	NBN (NM_002485) rearrangement: g.90932931_c.994+81:NBNdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	43626	NA	0	19	10	19
P-0017368-T01-IM6	SOMATIC	HIST1H2BD	PTPRK	6	6	26158623	128386296	Exon 1 of HIST1H2BD(+)	Intron of PTPRK(-):357bp before exon 13	GRCh37	INVERSION	HIST1H2BD (NM_021063) - PTPRK  (NM_001135648) rearrangement : c.226: HIST1H2BD_c.2158-357:PTPRKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {HIST1H2BD:PTPRK}	102227673	NA	0	615	0	762
P-0017375-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21562176	21575164	Exon 4 of LATS2(-)	Intron of LATS2(-):10Kb before exon 3	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.1743_c.343-9621del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12988	NA	0	90	10	106
P-0017376-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39879103	42872320	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-2204:TMPRSS2_c.40-61559:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993217	NA	0	36	10	38
P-0017412-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52443831	52450493	Intron of BAP1(-):26bp after exon 1	Intron of PHF7(+):2Kb after exon 4	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.37+27:BAP1_chr3:g.52450493del	PRECISE		MANUAL_OK	3to5	-	6662	NA	0	6	10	6
P-0017412-T02-IM6	SOMATIC	BAP1	PHF7	3	3	52443831	52450493	Intron of BAP1(-):26bp after exon 1	Intron of PHF7(+):2Kb after exon 4	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.37+27:BAP1_chr3:g.52450493del	PRECISE		MANUAL_OK	3to5	-	6662	NA	0	23	10	24
P-0017415-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11105573	11108123	Exon 9 of SMARCA4(+)	Intron of SMARCA4(+):903bp after exon 11	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1489_c.1812+903del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2550	NA	0	28	10	29
P-0017416-T01-IM6	SOMATIC	TP53	SPTY2D1-AS1	17	11	7579747	18621419	Intron of TP53(-):26bp before exon 3	5-UTR of SPTY2D1-AS1(+):10Kb before coding start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: (11;17)(p15.1;p13.1)(chr11:g.18621419::chr17:g.7579747)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	110	10	110
P-0017421-T01-IM6	SOMATIC	KDM5A	CDKAL1	12	6	461345	20524426	Intron of KDM5A(-):25bp after exon 9	IGR: 10Kb before CDKAL1(+)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(6;12)(p22.3;p13.33)(chr6:g.20524426::chr12:g.461345)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0017421-T01-IM6	SOMATIC	SMO	SMO	7	7	128845599	128849256	Exon 4 of SMO(+)	Intron of SMO(+):18bp after exon 8	GRCh37	DUPLICATION	SMO (NM_005631) rearrangement: c.896_c.1466+18dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3657	NA	0	15	10	15
P-0017424-T01-IM6	SOMATIC	FGFR2	ATE1	10	10	123240443	123503893	Intron of FGFR2(-):908bp before exon 18	Intron of ATE1(-):520bp before exon 12	GRCh37	DUPLICATION	FGFR2 (NM_000141) - ATE1 (NM_001001976) rearrangement: c.2302-908:FGFR2_c.1379-520:ATE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FGFR2:ATE1}	263450	NA	0	83	10	90
P-0017426-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89829147	89833521	Intron of FANCA(-):717bp before exon 29	Intron of FANCA(-):27bp after exon 27	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.2779-717_c.2601+28del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	4374	NA	0	10	10	10
P-0017428-T01-IM6	SOMATIC	CDK12	MYL4	17	17	37665980	45272565	Exon 7 of CDK12(+)	IGR: 14Kb before MYL4(+)	GRCh37	DUPLICATION	CDK12 (NM_016507) rearrangement: c.2632_chr17:g.45272565dup	PRECISE		MANUAL_OK	5to3	-	7606585	NA	0	82	10	116
P-0017432-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	36934020	36937631	Intron of CSF3R(-):198bp before exon 13	Intron of CSF3R(-):35bp after exon 9	GRCh37	DELETION	CSF3R (NM_000760) rearrangement: c.1071+36_c.1577-198del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3611	NA	0	26	10	26
P-0017444-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739499	1808864	Intron of TACC3(+):70bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused with TACC3 exons 11-16): c.2296:FGFR3_c.1941+70:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69365	NA	0	39	0	44
P-0017448-T01-IM6	SOMATIC	STAU1	RTEL1	20	20	47757080	62325877	Intron of STAU1(-):5Kb before exon 6	Intron of RTEL1(+):36bp after exon 31	GRCh37	INVERSION	RTEL1 (NM_032957) - STAU1 (NM_017453) rearrangement: c.3181+36:RTEL1_c.511-4612:STAU1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RTEL1:STAU1}	14568797	NA	0	17	10	17
P-0017459-T01-IM6	SOMATIC	ROS1	DCBLD1	6	6	117659011	117776626	Intron of ROS1(-):508bp before exon 31	IGR: 27Kb before DCBLD1(+)	GRCh37	DELETION	ROS1 (NM_002944) Rearrangement : c.5080-508:ROS1_chr6:g.117776626del	PRECISE		MANUAL_OK	3to5	-	117615	NA	0	3	10	3
P-0017462-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3823128	3828120	Intron of CREBBP(-):623bp after exon 13	Exon 10 of CREBBP(-)	GRCh37	DUPLICATION	CREBBP (NM_004380) Rearrangement : c.2005_c.2463+624dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4992	NA	0	120	10	143
P-0017470-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36218480	36227282	Exon 16 of KMT2B(+)	Intron of KMT2B(+):308bp before exon 31	GRCh37	DUPLICATION	KMT2B(NM_014727) Rearrangement : c.4259_c.7160-309dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8802	NA	0	65	10	73
P-0017476-T01-IM6	SOMATIC	TSC2	CERS5	16	12	2136162	50529417	Intron of TSC2(+):31bp before exon 37	Intron of CERS5(-):97bp after exon 8	GRCh37	TRANSLOCATION	CERS5 (NM_147190) - TSC2 (NM_000548) Rearrangement :  t(12,16)(q13.12,p13.3)(chr12:g.131062050::chr16:g.143130066)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CERS5:TSC2}	0	NA	0	5	10	5
P-0017478-T01-IM6	SOMATIC	DDR2	DDR2	1	1	162729024	162749790	Intron of DDR2(+):561bp before exon 8	Intron of DDR2(+):111bp before exon 18	GRCh37	INVERSION	DDR2 (NM_006182) Rearrangement : c.672-562_c.2434-112inv	PRECISE		MANUAL_OK	5to5	-	20766	NA	0	6	10	6
P-0017482-T01-IM6	SOMATIC	TECRL	EPHA5	4	4	65253699	66535235	Intron of TECRL(-):13Kb before exon 2	Intron of EPHA5(-):44bp after exon 1	GRCh37	DELETION	EPHA5 (NM_004439) - TECRL (NM_001010874) Rearrangement : c.181+45:EPHA5_c.235-12758:TECRLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EPHA5:TECRL}	1281536	NA	0	67	10	70
P-0017482-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55208418	55223093	Intron of EGFR(+):2Kb before exon 2	Intron of EGFR(+):429bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-1561_c.890-430del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	14675	NA	0	57	10	65
P-0017482-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55231368	55238235	Intron of EGFR(+):57bp before exon 14	Intron of EGFR(+):632bp before exon 16	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.1632-58_c.1881-633del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	6867	NA	0	19	10	21
P-0017490-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14219962	14627987	Intron of PRKACA(-):2Kb before exon 2	Intron of DNAJB1(-):129bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused to PRKACA exon 2): c.212-129:DNAJB1_c.47-1741:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	408025	NA	0	14	10	18
P-0017491-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39855851	42871043	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):927bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.56-927:TMPRSS2_c.18+14436:ERGdel	PRECISE		MANUAL_OK	3to3	-	3015192	NA	0	41	10	40
P-0017493-T01-IM6	SOMATIC	OLIG2	TMPRSS2	21	21	34285242	42869534	IGR: 113Kb before OLIG2(+)	Intron of TMPRSS2(-):511bp after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.126+512_chr21:g.34285242inv	PRECISE		MANUAL_OK	5to5	-	8584292	NA	0	41	10	57
P-0017504-T01-IM6	SOMATIC	MET	ANKRD7	7	7	116413346	118532668	Intron of MET(+):1Kb after exon 14	IGR: 668Kb before ANKRD7(+)	GRCh37	INVERSION	MET (NM_000245) rearrangement: c.3028+1303:MET_chr7:g.118532668inv	PRECISE		MANUAL_OK	5to5	-	2119322	NA	0	15	10	15
P-0017507-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55181368	55223241	Intron of EGFR(+):29Kb before exon 2	Intron of EGFR(+):281bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII deletion: c.89-28611_c.890-282del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41873	NA	0	62	0	68
P-0017509-T01-IM6	SOMATIC	ADAMTS6	NPM1	5	5	64521538	170827138	Intron of ADAMTS6(-):374bp after exon 16	Intron of NPM1(+):18bp before exon 7	GRCh37	DELETION	NPM1(NM_002520) rearrangement: chr5:g.64521538_c.525-19:NPM1del	IMPPRECISE		MANUAL_OK	3to5	-	106305600	NA	0	6	0	6
P-0017509-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	149490642	149503863	Promoter of PDGFRB(-):3Kb from tx start	Exon 14 of PDGFRB(-)	GRCh37	DELETION	PDGFRB (NM_002609) rearrangement: c.1973_c.*4684del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13221	NA	0	4	7	4
P-0017518-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486597	57492599	Intron of NAB2(+):102bp before exon 4	Exon 18 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-2 fused to STAT6 exons 18-22): c.1092-103:NAB2_c.2042:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	6002	NA	0	81	10	78
P-0017523-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314326	43611192	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):839bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion ( KIF5B exons 1-15 fused to RET exons 12-20): c.1726-2362:KIF5B_c.2137-840:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296866	NA	0	6	10	7
P-0017529-T01-IM5	SOMATIC	MTOR	MTOR	1	1	11297525	11300423	Intron of MTOR(-):374bp after exon 13	Exon 11 of MTOR(-)	GRCh37	DELETION	MTOR (NM_004958) Rearrangement :  c.1723_c.2208+375del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2898	NA	0	106	10	111
P-0017533-T01-IM5	SOMATIC	PIK3R1	PIK3R1	5	5	67589713	67593976	Intron of PIK3R1(+):51bp after exon 11	3-UTR of PIK3R1(+):71Kb after coding stop	GRCh37	DELETION	PIK3R1 (NM_181523) Rearrangement : c.1425+51_c.*547del	PRECISE		MANUAL_OK	3to5	-	4263	NA	0	12	10	13
P-0017542-T01-IM5	SOMATIC	EXOSC10	MTOR	1	1	11154214	11187119	Intron of EXOSC10(-):2Kb after exon 3	Exon 45 of MTOR(-)	GRCh37	DUPLICATION	EXOSC10 (NM_001001998) - MTOR (NM_004958) rearrangement: c.372+1601: EXOSC10_c.6299:MTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EXOSC10:MTOR}	32905	NA	0	13	10	14
P-0017548-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39876142	42872954	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2838:TMPRSS2_c.40-58598:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996812	NA	0	22	10	23
P-0017548-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876142	42872954	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2838:TMPRSS2_c.40-58598:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996812	NA	0	50	10	54
P-0017550-T01-IM5	SOMATIC	KMT2C	LINC01287	7	7	151949621	153210535	Intron of KMT2C(-):9bp after exon 10	IGR: 114Kb before LINC01287(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement : c.1469+10:KMT2C_g.153210535inv	PRECISE		MANUAL_OK	5to5	-	1260914	NA	0	20	10	31
P-0017551-T01-IM5	SOMATIC	STK25	PDCD1	2	2	242452335	242795003	IGR: 18Kb before STK25(-)	Exon 2 of PDCD1(-)	GRCh37	DELETION	PDCD1 (NM_005018) rearrangement: chr2:g.242452335_c.206:PDCD1del	PRECISE		MANUAL_OK	3to5	-	342668	NA	0	20	10	32
P-0017551-T01-IM5	SOMATIC	TACC3	FGFR3	4	4	1739063	1808877	Intron of TACC3(+):8bp after exon 9	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused with TACC3 exons 10-16): c.2309:FGFR3_c.1836+8:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69814	NA	0	98	10	111
P-0017582-T01-IM5	SOMATIC	MGA	MGA	15	15	42034328	42041725	Intron of MGA(+):415bp before exon 15	Exon 17 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) Rearrangement : c.4586-416_c.5920del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7397	NA	0	54	10	56
P-0017592-T01-IM5	SOMATIC	ALK	EML4	2	2	29447548	42502027	Intron of ALK(-):778bp after exon 19	Intron of EML4(+):6Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exon 1-5 fused with ALK exon 20-29) : c.494-5963:EML4_c.3172+779:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054479	NA	0	46	10	46
P-0017608-T01-IM5	SOMATIC	ROS1	DCBLD1	6	6	117643993	117886228	Intron of ROS1(-):1Kb before exon 35	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-1436:ROS1_chr6:g.117886228del	PRECISE		MANUAL_OK	3to5	-	242235	NA	0	9	10	9
P-0017653-T01-IM5	SOMATIC	ZNF284	POLD1	19	19	44581714	50912201	Intron of ZNF284(+):1Kb after exon 2	Intron of POLD1(+):43bp after exon 15	GRCh37	DUPLICATION	POLD1 (NM_002691) - ZNF284 (NM_001037813) rearrangement: c.1892+43: POLD1_c.15+1157: ZNF284dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {POLD1:ZNF284}	6330487	NA	0	4	10	4
P-0017656-T01-IM5	SOMATIC	COPRS	CDK12	17	17	30096337	37619078	IGR: 83Kb before COPRS(-)	Exon 1 of CDK12(+)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement : g.30096337_c.754:CDK12inv	PRECISE		MANUAL_OK	5to5	-	7522741	NA	0	9	10	11
P-0017692-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	149430978	149435652	Promoter of CSF1R(-):2Kb from tx start	Exon 19 of CSF1R(-)	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.2491_c.*2654del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4674	NA	0	10	10	10
P-0017693-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138546697	140489537	Intron of KIAA1549(-):495bp before exon 16	Intron of BRAF(-):2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (c.1141-2153): c.4930-495:KIAA1549_c.1141-2153:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1942840	NA	0	14	10	14
P-0017708-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39873844	42874792	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-4676:TMPRSS2_c.40-56300:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000948	NA	0	5	10	6
P-0017711-T01-IM6	SOMATIC	SPIN4	NTRK3	X	15	62147342	88678407	IGR: 420Kb before SPIN4(-)	Exon 10 of NTRK3(-)	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(X;15)(q11.1;q25.3)(chrX:g.62147342::chr15:g.88678407)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	19	10	23
P-0017715-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141568646	141570169	Exon 7 of AGO2(-)	Intron of AGO2(-):303bp after exon 5	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.655+304_c.816del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1523	NA	0	8	10	8
P-0017715-T02-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14222123	14628231	Intron of PRKACA(-):3Kb after exon 1	Intron of DNAJB1(-):373bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused in-frame with PRKACA exons 2-10): NM_006145.1:c.212-373:DNAJB1_c.47-3902:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	406108	NA	0	2	10	3
P-0017716-T01-IM6	SOMATIC	RET	TIMM23B	10	10	43611172	51582314	Intron of RET(+):859bp before exon 12	Intron of TIMM23B(+):150Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion (NCOA4 exons 1-7 fused with RET exons 12-20): c.618+42:NCOA4_c.2137-860:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7971142	NA	0	63	10	67
P-0017718-T01-IM6	SOMATIC	CREBBP	LRRC10	16	12	3777792	70017642	Exon 31 of CREBBP(-)	IGR: 15Kb before LRRC10(-)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(12;16)(q15;p13.3)(chr12:g.70017642::chr16:g.3777792)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	10	25
P-0017718-T01-IM6	SOMATIC	RARA	TERT	17	5	38475855	1295225	5-UTR of RARA(+):12Kb before coding start	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;17)(p15.33;q21.2)(chr5:g.1295225::chr17:g.38475855)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	21
P-0017723-T01-IM6	SOMATIC	IRS2	CADM2	13	3	110436835	86035837	Exon 1 of IRS2(-)	Intron of CADM2(+):7Kb after exon 8	GRCh37	TRANSLOCATION	IRS2 (NM_003749) - CADM2  (NM_001167674) rearrangement: t(3;13)(p12.1;q34)(chr3:g.86035837::chr13:g.110436835)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IRS2:CADM2}	0	NA	0	88	10	166
P-0017724-T01-IM6	SOMATIC	LINC01518	RET	10	10	43149839	43606634	IGR: 19Kb before LINC01518(-)	Intron of RET(+):20bp before exon 7	GRCh37	DELETION	RET (NM_020975) rearrangement : g.43149839_c.1264-2:RETdel	PRECISE		MANUAL_OK	3to5	-	456795	NA	0	9	10	9
P-0017724-T01-IM6	SOMATIC	FYN	LINC01107	6	2	112024156	239377558	Exon 5 of FYN(-)	IGR: 42Kb before LINC01107(-)	GRCh37	TRANSLOCATION	FYN (NM_153047) rearrangement: t(2;6)(q37.3;q21)(chr2:g.239377558::chr6:g.112024156)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	19
P-0017726-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151848057	152026609	Exon 51 of KMT2C(-)	Intron of KMT2C(-):1Kb after exon 3	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.12702_c.389+1077del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	178552	NA	0	12	0	12
P-0017730-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39825791	42874582	Intron of ERG(-):8Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-4466:TMPRSS2_c.19-8247:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3048791	NA	0	20	10	28
P-0017744-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32894273	32900237	Intron of BRCA2(+):811bp after exon 3	Exon 5 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement : c.316+811_c.426-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5964	NA	0	77	10	81
P-0017760-T01-IM6	SOMATIC	MGA	MGA	15	15	42055671	42059193	Intron of MGA(+):1Kb after exon 22	Exon 24 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) Rearrangement : c.7744+1111_c.8913del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3522	NA	0	5	10	6
P-0017760-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70120198	70140019	Exon 3 of SOX9(+)	IGR: 23Kb before SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) Rearrangement : c.1200_chr17:g.70140019del	PRECISE		MANUAL_OK	3to5	-	19821	NA	0	15	10	15
P-0017769-T01-IM6	SOMATIC	DIS3	LINC00377	13	13	73351558	81632702	Exon 4 of DIS3(-)	IGR: 40Kb before LINC00377(+)	GRCh37	INVERSION	DIS3 (NM_014953) Rearrangement : c.654:DIS3_chr13:g.81632702inv	PRECISE		MANUAL_OK	5to5	-	8281144	NA	0	14	10	23
P-0017774-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40091030	42875842	IGR: 20Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : chr21:g.40091030_c.55+4035:TMPRSS2del	PRECISE		MANUAL_OK	3to5	-	2784812	NA	0	17	10	18
P-0017784-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	22	24167434	24168908	Exon 7 of SMARCB1(+)	Intron of SMARCB1(+):1Kb after exon 7	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.818_c.986+1306del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1474	NA	0	3	10	3
P-0017789-T01-IM6	SOMATIC	PTBP1	FGFR3	19	4	802509	1808676	Intron of PTBP1(+):1Kb before exon 3	Intron of FGFR3(+):15bp after exon 17	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - PTBP1 (NM_002819) rearrangement: t(4;19)(p16.3;p13.3)(chr4:g.1808676::chr19:g.802509)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:PTBP1}	0	NA	0	28	10	29
P-0017806-T01-IM6	SOMATIC	CHEK1	CHEK1	11	11	125510745	125514491	Intron of CHEK1(+):3Kb before exon 9	Exon 11 of CHEK1(+)	GRCh37	DELETION	CHEK1 (NM_001274) Rearrangement:  c.815-2942_c.1186del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3746	NA	0	6	10	5
P-0017807-T01-IM6	SOMATIC	APC	APC	5	5	112175216	112183880	Exon 16 of APC(+)	Promoter of APC(+):110Kb from tx start	GRCh37	DELETION	APC (NM_000038) Rearrangement: c.3925_c.*4057del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8664	NA	0	7	10	7
P-0017817-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857371	9857965	Exon 13 of GRIN2A(-)	Exon 13 of GRIN2A(-)	GRCh37	DELETION	GRIN2A (NM_001134407) rearrangement: c.3436_c.4030del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	594	NA	0	81	0	89
P-0017827-T01-IM6	SOMATIC	EGFR	ELDR	7	7	55268962	55336682	Exon 25 of EGFR(+)	IGR: 31Kb before ELDR(-)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.3028:EGFR_chr7:g.55336682del	PRECISE		MANUAL_OK	3to3	-	67720	NA	0	109	10	106
P-0017831-T01-IM6	SOMATIC	IRX6	FGFR2	16	10	55238062	123241224	IGR: 120Kb before IRX6(+)	Intron of FGFR2(-):2Kb before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;16)(q26.13;q12.2)(chr10:g.123241224::chr16:g.55238062)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	22
P-0017846-T01-IM6	SOMATIC	TNNI1	IL10	1	1	201374280	206944213	3-UTR of TNNI1(-):5Kb after coding stop	Intron of IL10(-):38bp after exon 3	GRCh37	DELETION	IL10 (NM_000572) Rearrangement : chr1:g.201374280_c.378+39:IL10del	PRECISE		MANUAL_OK	3to5	-	5569933	NA	0	6	10	6
P-0017846-T01-IM6	SOMATIC	SLC39A10	SF3B1	2	2	196301398	198283286	IGR: 220Kb before SLC39A10(+)	Exon 5 of SF3B1(-)	GRCh37	INVERSION	SF3B1 (NM_012433) Rearrangement : chr2:g.196301398_c.442:SF3B1inv	PRECISE		MANUAL_OK	3to3	-	1981888	NA	0	14	10	13
P-0017856-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55195400	55229282	Intron of EGFR(+):15Kb before exon 2	Exon 13 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-14579_c.1589del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	33882	NA	0	28	0	261
P-0017859-T01-IM6	SOMATIC	MAX	MAX	14	14	65540092	65543472	Promoter of MAX(-):2Kb from tx start	Intron of MAX(-):91bp before exon 5	GRCh37	INVERSION	MAX (NM_002382) rearrangement: c.*3102_c.296-91del	PRECISE		MANUAL_OK	3to3	-	3380	NA	0	22	10	20
P-0017861-T01-IM6	SOMATIC	FGFR3	LETM1	4	4	1807235	1815521	Intron of FGFR3(+):32bp after exon 11	3-UTR of LETM1(-):629bp after coding stop	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement : c.1534+32:FGFR3_g.1815521inv	PRECISE		MANUAL_OK	3to3	-	8286	NA	0	4	10	4
P-0017864-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55116941	55222620	Intron of EGFR(+):30Kb after exon 1	Intron of EGFR(+):775bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+29883_c.889+775del	PRECISE		MANUAL_OK	3to5	-	105679	NA	NA	41	10	NA
P-0017864-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268332	55271004	Intron of EGFR(+):226bp after exon 24	Intron of EGFR(+):686bp after exon 27	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4970_g.112190339del	PRECISE		MANUAL_OK	3to5	-	2672	NA	NA	53	10	NA
P-0017882-T01-IM6	SOMATIC	MAPK4	PARK2	18	6	48058391	162170030	IGR: 28Kb before MAPK4(+)	Intron of PARK2(-):37Kb after exon 7	GRCh37	TRANSLOCATION	PARK2 (NM_004562) rearrangement: t(6;18)(q26;q21.2)(chr6:g.162170030::chr18:g.48058391)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	27
P-0017882-T01-IM6	SOMATIC	TMPRSS2	CHD3	21	17	42870483	7790479	Intron of TMPRSS2(-):367bp before exon 2	Intron of CHD3(+):2Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(p13.1;q22.3)(chr17:g.7790479::chr21:g.42870483)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	82	10	85
P-0017882-T01-IM6	SOMATIC	HDAC9	XPO1	7	2	18926552	61721253	Intron of HDAC9(+):12Kb after exon 21	Intron of XPO1(-):27bp before exon 12	GRCh37	TRANSLOCATION	HDAC9 (NM_178425) - XPO1 (NM_003400) rearrangement: t(2;7)(p15;p21.2)(chr2:g.61721253::chr7:g.18926552)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HDAC9:XPO1}	0	NA	0	197	10	195
P-0017888-T01-IM6	SOMATIC	MPRIP	NF1	17	17	16950044	29556312	Intron of MPRIP(+):4Kb after exon 1	Exon 21 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) - MPRIP (NM_015134) rearrangement: c.2679NF1_c.123+3759:MPRIPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NF1:MPRIP}	12606268	NA	0	9	10	9
P-0017892-T01-IM6	SOMATIC	PTK2B	RECQL4	8	8	27181977	145741293	5-UTR of PTK2B(+):73Kb before coding start	Intron of RECQL4(-):19bp before exon 6	GRCh37	DELETION	RECQL4 (NM_004260) Rearrangement : c.-1259:PTK2B_c.1132-19:RECQL4	PRECISE		MANUAL_OK	3to5	Antisense Fusion	118559316	NA	0	10	10	11
P-0017899-T01-IM6	SOMATIC	LINC01500	APC	14	5	59220719	112174171	IGR: 74Kb before LINC01500(+)	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) Rearrangement: t(5;14)(q22.1;q23.1)(chr5:g.112174171::chr14:g.59220719)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	5
P-0017903-T01-IM6	SOMATIC	LINC01032	CDC73	1	1	192854447	193104649	IGR: 50Kb before LINC01032(-)	Intron of CDC73(+):17bp before exon 5	GRCh37	DELETION	CDC73 (NM_024529) Rearrangement : chr1:g.192854447_c.371-18:CDC73del	PRECISE		MANUAL_OK	3to5	-	250202	NA	0	17	10	17
P-0017903-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2B	9	9	21974486	22211117	Exon 1 of CDKN2Ap14ARF	IGR: 208Kb before CDKN2B	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) Rearrangement : c.317-3279:CDKN2Ap14ARF_chr9:g.22211117del	PRECISE		MANUAL_OK	3to5	-	236631	NA	NA	11	10	NA
P-0017903-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2B	9	9	21974486	22211117	Exon 1 of CDKN2Ap16INK4A	IGR: 208Kb before CDKN2B	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement :  c.150+191:CDKN2Ap16INK4A _chr9:g.22211117del	PRECISE		MANUAL_OK	3to5	-	236631	NA	NA	11	10	NA
P-0017913-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15347094	15350152	Promoter of BRD4(-):1Kb from tx start	Intron of BRD4(-):50bp after exon 17	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.*2094_c.3576+51del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3058	NA	0	104	10	117
P-0017917-T01-IM6	SOMATIC	ZRSR2	RAB3IP	X	12	15841299	70367195	Exon 11 of ZRSR2(+)	IGR: 194Kb before RAB3IP(+)	GRCh37	TRANSLOCATION	ZRSR2 (NM_005089) rearrangement: t(12;X)(q15;p22.2)(chr12:g.70367195::chrX:g.15841299)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	96
P-0017917-T01-IM6	SOMATIC	ZRSR2	ZRSR2	X	X	15838330	15842587	Exon 10 of ZRSR2(+)	Promoter of ZRSR2(+):34Kb from tx start	GRCh37	INVERSION	ZRSR2 (NM_005089) rearrangement : c.828_c.*1222inv	PRECISE		MANUAL_OK	5to5	-	4257	NA	0	15	10	46
P-0017922-T01-IM6	SOMATIC	MN1	EWSR1	22	22	27974086	29692355	IGR: 170Kb before MN1(-)	Exon 13 of EWSR1(+)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.1072:EWSR1_chr22:g.27974086del	IMPPRECISE		MANUAL_OK	3to5	-	1718269	NA	0	51	0	57
P-0017924-T01-IM6	SOMATIC	KIF5B	ALK	10	2	32305310	29447945	Intron of KIF5B(-):723bp before exon 25	Intron of ALK(-):381bp after exon 19	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - ALK (NM_004304) fusion: t(2;10)(p23.2;p11.22)(chr2:g.29447945::chr10:g.32305310)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIF5B:ALK}	0	NA	0	41	10	46
P-0017929-T01-IM6	SOMATIC	ELF3	LGR6	1	1	201982834	202239848	Intron of ELF3(+):122bp before exon 8	Intron of LGR6(+):6Kb before exon 5	GRCh37	DUPLICATION	LGR6 (NM_001017403) - ELF3 (NM_004433) rearrangement: c.429-5586:LGR6_c.806-123:ELF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LGR6:ELF3}	257014	NA	0	14	10	14
P-0017929-T01-IM6	SOMATIC	SRC	PGA3	20	11	36012632	60972308	Exon 4 of SRC(+)	Intron of PGA3(+):567bp after exon 2	GRCh37	TRANSLOCATION	SRC (NM_198291) - PGA3 (NM_001079807) rearrangement: t(11;20)(q12.2;q11.23)(chr11:g.60972308::chr20:g.36012632)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SRC:PGA3}	0	NA	0	20	10	32
P-0017932-T01-IM6	SOMATIC	KMT2D	TUBA1C	12	12	49416107	49628359	Exon 52 of KMT2D(-)	IGR: 31Kb before TUBA1C(+)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.16368:KMT2D_chr12:g.49628359del	PRECISE		MANUAL_OK	3to5	-	212252	NA	0	38	10	46
P-0017932-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72821567	72834653	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):625bp before exon 8	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3865-625_c.10608del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13086	NA	0	49	10	55
P-0017974-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37618829	37652826	Exon 1 of CDK12(+)	Intron of CDK12(+):2Kb after exon 5	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.505_c.2419+1879del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	33997	NA	0	11	10	12
P-0017978-T01-IM6	SOMATIC	ALK	EML4	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7306:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052568	NA	0	15	10	18
P-0017978-T02-IM6	SOMATIC	ALK	EML4	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7306:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052568	NA	0	4	10	6
P-0017978-T03-IM6	SOMATIC	ALK	EML4	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.667+7306:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052568	NA	0	38	10	41
P-0017984-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78421083	78436593	Intron of FUBP1(-):69bp before exon 18	Intron of FUBP1(-):894bp before exon 2	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.1706-69_c.121-894del	PRECISE		MANUAL_OK	3to5	Deletion of 16 exons : out of frame	15510	NA	0	5	10	9
P-0017987-T01-IM6	SOMATIC	TMPRSS2	C1orf112	21	1	42871817	169817552	Intron of TMPRSS2(-):2Kb before exon 2	Intron of C1orf112(+):608bp after exon 20	GRCh37	TRANSLOCATION	C1orf112 (NM_018186) - TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q24.2;q22.3)(chr1:g.169817552::chr21:g.42871817)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {C1orf112:TMPRSS2}	0	NA	0	170	10	169
P-0017989-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37483962	38061669	Intron of SLC25A21(-):140Kb before exon 2	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	SLC25A21 (NM_030631) - FOXA1 (NM_00449) rearrangement: c.71-139753:SLC25A21_c.320:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	577707	NA	0	12	10	12
P-0017990-T01-IM6	SOMATIC	ARID1A	FOXO6	1	1	27106766	41724708	Exon 20 of ARID1A(+)	IGR: 103Kb before FOXO6(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.6377:ARID1A_chr1:g.41724708inv	PRECISE		MANUAL_OK	3to3	-	14617942	NA	0	33	10	33
P-0018003-T01-IM6	SOMATIC	TMPRSS2	LSS	21	21	42870263	47614442	Intron of TMPRSS2(-):147bp before exon 2	Exon 19 of LSS(-)	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) - LSS (NM_001001438) rearrangement: c.56-147:TMPRSS2_c.1951:LSSdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMPRSS2:LSS}	4744179	NA	0	10	10	11
P-0018007-T01-IM6	SOMATIC	ERBB2	GRB7	17	17	37883862	37891043	Intron of ERBB2(+):62bp after exon 26	IGR: 3Kb before GRB7(+)	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3412+62:ERBB2_chr17:g.37891043del	PRECISE		MANUAL_OK	3to5	-	7181	NA	0	14	10	16
P-0018016-T01-IM6	SOMATIC	EIF3G	DNMT1	19	19	10226948	10291095	Intron of EIF3G(-):198bp before exon 8	Exon 4 of DNMT1(-)	GRCh37	DELETION	DNMT1 (NM_001379) - EIF3G (NM_003755) rearrangement: c.376:DNMT1_c.596-198del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNMT1:EIF3G}	64147	NA	0	29	10	29
P-0018020-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21966150	21968836	Promoter of CDKN2A(-):2Kb from tx start	Intron of CDKN2A(-):595bp before exon 3	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.458-595_c.*2078inv	PRECISE		MANUAL_OK	3to3	-	2686	NA	0	53	10	52
P-0018030-T01-IM6	SOMATIC	GNG7	SMARCA4	19	19	2566206	11098418	5-UTR of GNG7(-):51Kb before coding start	Exon 6 of SMARCA4(+)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.chr19:g.25566206_c.936inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GNG7:SMARCA4}	8532212	NA	0	26	10	35
P-0018032-T01-IM6	SOMATIC	NOTCH1	LCN6	9	9	139400940	139642231	Intron of NOTCH1(-):38bp after exon 24	Intron of LCN6(-):216bp before exon 2	GRCh37	DUPLICATION	NOTCH1 (NM_017617) LCN6 (NM_198946) rearrangement: c.4014+39_c.91-216dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NOTCH1:LCN6}	241291	NA	0	19	10	20
P-0018038-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859266	42873173	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion : c.56-3057:TMPRSS2_c.18+11021:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013907	NA	0	14	10	15
P-0018060-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88514531	12037037	Intron of NTRK3(-):31Kb before exon 15	Intron of ETV6(+):341bp before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12037037::chr15:g.88514531)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	52	10	52
P-0018069-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311257	43607832	Intron of KIF5B(-):72bp before exon 17	Intron of RET(+):160bp after exon 8	GRCh37	INVERSION	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.1648+160:RET_c.1915-72:KIF5Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RET:KIF5B}	11296575	NA	0	40	10	40
P-0018074-T01-IM6	SOMATIC	SYK	SMC2	9	9	93650063	106861490	Exon 12 of SYK(+)	Intron of SMC2(+):434bp before exon 5	GRCh37	INVERSION	SYK (NM_003177) rearrangement: c.1614:SYK_chr9:g.106861490inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	13211427	NA	0	13	10	13
P-0018082-T01-IM6	SOMATIC	TFG	NTRK1	3	1	100450466	156843796	Intron of TFG(+):885bp before exon 5	Intron of NTRK1(+):45bp after exon 8	GRCh37	TRANSLOCATION	TFG (NM_001195478) - NTRK1 (NM_002529) fusion (TFG exons 1-4 fused with NTRK1 exons 9-17): t(1;3)(q23.1;q12.2)(chr1:g.156843796::chr3:g.100450466)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TFG:NTRK1}	0	NA	0	16	10	16
P-0018086-T01-IM6	SOMATIC	ERG	METTL22	21	16	39817374	8690703	Exon 2 of ERG(-)	IGR: 25Kb before METTL22(+)	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(16;21)(p13.2;q22.2)(chr16:g.8690703::chr21:g.39817374)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	19	10	22
P-0018090-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819785	42867125	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):620bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10):c.127-620:TMPRSS2_c.19-2241:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3047340	NA	0	29	10	30
P-0018108-T01-IM6	SOMATIC	DGKH	FH	13	1	42830153	241667339	5-UTR of DGKH(+):563bp before coding start	Intron of FH(-):2bp after exon 7	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241667340::chr13:g.42830153)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {FH:DGKH}	0	NA	0	20	0	27
P-0018108-T02-IM6	SOMATIC	DGKH	FH	13	1	42830153	241667340	5-UTR of DGKH(+):563bp before coding start	Intron of FH(-):1bp after exon 7	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241667340::chr13:g.42830153)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {FH:DGKH}	0	NA	0	25	0	27
P-0018109-T01-IM6	SOMATIC	BLM	ANKLE2	15	12	91358467	133320386	Exon 22 of BLM(+)	Intron of ANKLE2(-):524bp before exon 6	GRCh37	TRANSLOCATION	BLM (NM_000057) - ANKLE2 (NM_015114) rearrangement: t(12;15)(q24.33;q26.1)(chr12:g.133320386::chr15:g.91358467)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {BLM:ANKLE2}	0	NA	0	29	0	28
P-0018112-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176153746	176157265	Intron of RFWD2(-):22bp after exon 2	Intron of RFWD2(-):3Kb before exon 2	GRCh37	INVERSION	RFWD2 (NM_022457) rearrangement: c.408-3437_c.467+23inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3519	NA	0	16	10	22
P-0018113-T01-IM6	SOMATIC	BMP2	TAP1	20	6	6891743	32813483	IGR: 143Kb before BMP2(+)	Exon 11 of TAP1(-)	GRCh37	TRANSLOCATION	TAP1 (NM_000593) rearrangement: t(6;20)(p21.32;p12.3)(chr6:g.32813483::chr20:g.6891743)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	26
P-0018115-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60415608	123241970	Intron of BICC1(+):35Kb after exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused in-frame with BICC1 exons 3-21):   c.2301+1242:FGFR2_c.237+34947:BICC1dup	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62826362	NA	0	59	10	77
P-0018120-T01-IM6	SOMATIC	DISC1FP1	MRE11A	11	11	90538845	94180372	5-UTR of DISC1FP1(+):109Kb before coding start	Intron of MRE11A(-):12bp after exon 15	GRCh37	DELETION	MRE11A (NM_005591) Rearrangement: c.1783+13:MRE11A_chr11g.:90538845del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3641527	NA	0	7	10	7
P-0018122-T01-IM6	SOMATIC	TMPRSS2	ABCG1	21	21	42851084	43627952	Intron of TMPRSS2(-):14bp after exon 7	Intron of ABCG1(+):6Kb after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ABCG1 (NM_207627) Rearrangement: c.794+15:TMPRSS2_c.48+6119:ABCG1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TMPRSS2:ABCG1}	776868	NA	0	38	10	48
P-0018127-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821632	42868642	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Rearrangement: c.126+1404:TMPRSS2_.c.19-4088:ERGinv	PRECISE		MANUAL_OK	3to3	-	3047010	NA	0	15	10	13
P-0018131-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) Rearrangement : c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	4	10	4
P-0018131-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39891617	39932099	IGR: 19Kb before BCOR(-)	Exon 4 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) Rearrangement : chrX:g.39891617_c.2500:BCORdel	PRECISE		MANUAL_OK	3to5	-	40482	NA	0	3	8	3
P-0018149-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874384	42876321	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 4) : c.55+3556:TMPRSS2_c.40-56840:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3001937	NA	0	13	10	14
P-0018173-T01-IM6	SOMATIC	DROSHA	SH3TC2	5	5	31511348	148436871	Intron of DROSHA(-):65bp before exon 8	Intron of SH3TC2(-):5Kb before exon 2	GRCh37	INVERSION	DROSHA (NM_013235) rearrangement: c.1291-65:DROSHA_chr5:g.148436871inv	PRECISE		MANUAL_OK	3to3	-	116925523	NA	0	109	10	107
P-0018176-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41228630	41247025	Exon 13 of BRCA1(-)	Intron of BRCA1(-):148bp before exon 10	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.671-148_c.4359del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18395	NA	0	49	10	58
P-0018195-T01-IM6	SOMATIC	EFCAB11	NTRK2	14	9	90393239	87317072	Intron of EFCAB11(-):5Kb after exon 5	Intron of NTRK2(+):1bp before exon 5	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) rearrangement: t(9;14)(q21.33;q32.11)(chr9:g.87317072::chr14:g.90393239)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0018195-T01-IM6	SOMATIC	A4GALT	MAP3K14	22	17	43080364	43364113	IGR: 8Kb before A4GALT(-)	Exon 5 of MAP3K14(-)	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;22)(q21.31;q13.2)(chr17:g.43364113::chr22:g.43080364)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	21	0	23
P-0018216-T01-IM6	SOMATIC	TERT	FAM173B	5	5	1295198	10249793	Promoter of TERT(-):42Kb from tx start	Intron of FAM173B(-):176bp after exon 1	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-94_chr5:g.10249793del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FAM173B:TERT}	8954595	NA	0	3	9	3
P-0018220-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55092085	55223075	Intron of EGFR(+):5Kb after exon 1	Intron of EGFR(+):447bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+5027_c.890-448del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	130990	NA	0	5	0	5
P-0018222-T01-IM6	SOMATIC	ROS1	CD74	6	5	117646209	149783915	Intron of ROS1(-):631bp before exon 34	Intron of CD74(-):327bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783915::chr6:g.117646209)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	44	10	45
P-0018233-T01-IM6	SOMATIC	RPAP3	KMT2D	12	12	48015840	49436323	IGR: 40Kb before RPAP3(-)	Intron of KMT2D(-):20bp after exon 27	GRCh37	DELETION	KMT2D (NM_003482)  rearrangement: c.5867+21_chr12:g.48015840del	PRECISE		MANUAL_OK	3to5	-	1420483	NA	0	42	10	45
P-0018233-T01-IM6	SOMATIC	LINC00158	WT1	21	11	26525604	32414419	IGR: 233Kb before LINC00158(-)	Intron of WT1(-):118bp before exon 8	GRCh37	TRANSLOCATION	WT1 (NM_024426) rearrangement: t(11;21)(p13;q21.2)(chr11:g.32414419::chr21:g.26525604)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	6
P-0018235-T01-IM6	SOMATIC	R3HDM2	GLI1	12	12	57715760	57857515	IGR: 68Kb before R3HDM2(-)	Exon 2 of GLI1(+)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.41_chr12:g.57715760inv	PRECISE		MANUAL_OK	3to3	-	141755	NA	0	5	10	5
P-0018242-T01-IM6	SOMATIC	LRRC8B	CSDE1	1	1	90028558	115277117	5-UTR of LRRC8B(+):20Kb before coding start	Exon 8 of CSDE1(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement:  c.666:CSDE1_chr1:g.90028558del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25248559	NA	0	8	10	9
P-0018242-T01-IM6	SOMATIC	ALK	EML4	2	2	29448007	42500430	Intron of ALK(-):319bp after exon 19	Intron of EML4(+):8Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused in-frame with ALK exons 20-29): c.668-7560:EML4_c.3172+320:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052423	NA	0	126	10	124
P-0018243-T01-IM6	SOMATIC	GPRC5C	MET	17	7	72439446	116413793	Intron of GPRC5C(+):510bp before exon 3	Intron of MET(+):1Kb before exon 15	GRCh37	TRANSLOCATION	GPRC5C (NM_018653) - MET (NM_000245) rearrangement: t(7;17)(q31.2;q25.1)(chr7:g.116413793::chr17:g.72439446)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GPRC5C:MET}	0	NA	0	27	10	28
P-0018271-T01-IM6	SOMATIC	DOT1L	HAUS8	19	19	2222617	17159184	Intron of DOT1L(+):59bp after exon 24	Promoter of HAUS8(-):1Kb from tx start	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.3390+59_g.17159184del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	14936567	NA	0	24	10	109
P-0018274-T01-IM6	SOMATIC	CREBBP	SRL	16	16	3824792	4179394	Intron of CREBBP(-):98bp before exon 12	IGR: 60Kb before SRL(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.2159-98:CREBBP_g.4179394del	PRECISE		MANUAL_OK	3to5	-	354602	NA	0	8	10	7
P-0018276-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55112971	55223400	Intron of EGFR(+):26Kb after exon 1	Intron of EGFR(+):122bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+25913_c.890-123del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	110429	NA	0	6	0	6
P-0018278-T01-IM6	SOMATIC	NTHL1	ABCA3	16	16	2089995	2357769	Exon 6 of NTHL1(-)	Intron of ABCA3(-):681bp after exon 11	GRCh37	DUPLICATION	NTHL1 (NM_002528) - ABCA3 (NM_001089) Rearrangement : c.869:NTHL1_c.1285+682:ABCA3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NTHL1:ABCA3}	267774	NA	0	11	10	26
P-0018280-T01-IM6	SOMATIC	ALK	EML4	2	2	29447187	42501198	Intron of ALK(-):793bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exon 6 fused with ALK exon 20): c.494-6792:EML4_c.3173-793:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054011	NA	0	17	10	17
P-0018289-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151873850	151877632	Exon 38 of KMT2C(-)	Intron of KMT2C(-):163bp after exon 36	GRCh37	DELETION	KMT2C(NM_170606) Rearrangement : c.8688_c.7149+164del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3782	NA	0	21	10	22
P-0018294-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162864482	162896705	Exon 2 of PARK2(-)	Intron of PARK2(-):32Kb before exon 2	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.4970_g.112190339del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	32223	NA	0	52	10	53
P-0018297-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39993769	42875935	3-UTR of ERG(-):40Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 2-11):c.55+3942:TMPRSS2_c.-149-36900:ERGdel	PRECISE		MANUAL_OK	3to5	-	2882166	NA	0	19	10	21
P-0018302-T01-IM6	SOMATIC	SETD2	ZNF148	3	3	47059048	125048522	Intron of SETD2(-):79bp after exon 20	5-UTR of ZNF148(-):97Kb before coding start	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement : c.7533+80:SETD2_g.125048522inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	77989474	NA	0	6	10	6
P-0018314-T01-IM6	SOMATIC	BRCA1	LINC00854	17	17	41276193	41382277	5-UTR of BRCA1(-):78Kb before coding start	Promoter of LINC00854(-):9Kb from tx start	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.-19-61:BRCA1_chr17:g.41382277del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {LINC00854:BRCA1}	106084	NA	0	8	10	8
P-0018315-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39851526	42868471	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame with ERG exons 2-10): c.126+1575:TMPRSS2_c.18+18761:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3016945	NA	0	69	10	77
P-0018316-T01-IM6	SOMATIC	KMT2D	TUBA1B	12	12	49442868	49530496	Intron of KMT2D(-):19bp after exon 12	IGR: 9Kb before TUBA1B(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4020+20:KMT2D_chr12:g.49530496del	PRECISE		MANUAL_OK	3to5	-	87628	NA	0	2	7	2
P-0018319-T03-IM6	SOMATIC	BRAF	MRPS33	7	7	140487384	140641124	Exon 9 of BRAF(-)	IGR: 65Kb before MRPS33(-)	GRCh37	INVERSION	BRAF (NM_004333) rearrangement:c.1141:BRAF_chr7:g.140641124inv	PRECISE		MANUAL_OK	5to5	-	153740	NA	0	9	10	11
P-0018329-T01-IM6	SOMATIC	APC	APC	5	5	112174872	112175749	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.3581_c.4458inv	PRECISE		MANUAL_OK	5to5	-	877	NA	0	7	10	7
P-0018351-T01-IM6	SOMATIC	CDK8	CDK8	13	13	26959478	26967503	Exon 6 of CDK8(+)	Exon 7 of CDK8(+)	GRCh37	DELETION	CDK8 NM_001260) rearrangement: c.645_c.647-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8025	NA	0	2	6	2
P-0018351-T01-IM6	SOMATIC	CBFB	CBFB	16	16	67116241	67132612	Intron of CBFB(+):30bp after exon 5	Exon 6 of CBFB(+)	GRCh37	DELETION	CBFB (NM_022845) rearrangement: c.495+30_c.496-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16371	NA	0	5	10	6
P-0018373-T01-IM6	SOMATIC	MYD88	OXSR1	3	3	38182656	38206656	Exon 5 of MYD88(+)	Promoter of OXSR1(+):369bp from tx start	GRCh37	INVERSION	MYD88 (NM_002468) Rearrangement : c.809:MYD88_c.-712:OXSR1inv	PRECISE		MANUAL_OK	5to5	-	24000	NA	0	16	10	18
P-0018374-T01-IM6	SOMATIC	F11-AS1	FAT1	4	4	187311035	187542396	3-UTR of F11-AS1(-):111Kb after coding stop	Exon 10 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement : c.5344:FAT1_chr4:g.187311035del	PRECISE		MANUAL_OK	3to5	-	231361	NA	0	6	10	6
P-0018378-T01-IM6	SOMATIC	ROS1	LOC101929504	6	6	117710895	169216197	Exon 12 of ROS1(-)	IGR: 359Kb before LOC101929504(-)	GRCh37	INVERSION	ROS1 (NM_002944) Rearrangement : c.1377:ROS1_chr6:g.169216197inv	PRECISE		MANUAL_OK	3to3	-	51505302	NA	0	13	10	12
P-0018383-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72795294	72821894	IGR: 21Kb before ZFHX3(-)	Exon 10 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : chr16:g.72795294_c.10281del	PRECISE		MANUAL_OK	3to5	-	26600	NA	0	8	10	8
P-0018387-T01-IM6	SOMATIC	HNF1A	LINC00508	12	12	121434483	128369842	Exon 6 of HNF1A(+)	3-UTR of LINC00508(-):99Kb after coding stop	GRCh37	DUPLICATION	HNF1A (NM_000545) Rearrangement : c.1247:HNF1A_chr12:g.128369842dup	PRECISE		MANUAL_OK	5to3	-	6935359	NA	0	20	10	21
P-0018387-T01-IM6	SOMATIC	BBC3	NLRP9	19	19	47735845	56247995	Exon 1 of BBC3(-)	Intron of NLRP9(-):1Kb after exon 1	GRCh37	INVERSION	BBC3 (NM_001127240) Rearrangement: c.15:BBC3_c.280+1466:NLRP9inv	PRECISE		MANUAL_OK	3to3	-	8512150	NA	0	11	10	11
P-0018393-T01-IM6	SOMATIC	BTBD2	DOT1L	19	19	2005218	2228420	Intron of BTBD2(-):8Kb before exon 2	Intron of DOT1L(+):1Kb after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) - BTBD2 (NM_017797) Rearrangement : c.4606+1294_c.408-7756del	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {DOT1L:BTBD2}	223202	NA	0	15	10	15
P-0018395-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871911	42877413	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2464:TMPRSS2_c.40-54367:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3005502	NA	0	35	10	37
P-0018397-T01-IM6	SOMATIC	TENM2	ATR	5	3	166988538	142168296	Intron of TENM2(+):186Kb after exon 2	Exon 47 of ATR(-)	GRCh37	TRANSLOCATION	TENM2 (NM_001122679) - ATR () Rearrangement : t(5;3)(q34;q23)(chr5:g.166988538::chr3:g.142168296)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TENM2:ATR}	0	NA	0	7	10	7
P-0018416-T01-IM6	SOMATIC	LOC102723505	SOX9	17	17	69803812	70119786	IGR: 214Kb before LOC102723505(-)	Exon 3 of SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: chr17:g.69803812_c.788del	PRECISE		MANUAL_OK	3to5	-	315974	NA	0	63	10	68
P-0018419-T01-IM6	SOMATIC	SUFU	SUFU	10	10	104355874	104357034	Intron of SUFU(+):1Kb before exon 7	Exon 7 of SUFU(+)	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.757-1023_c.894del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1160	NA	0	17	10	19
P-0018445-T01-IM6	SOMATIC	LRP1	GLI1	12	12	57563367	57861887	Intron of LRP1(+):277bp after exon 20	Exon 10 of GLI1(+)	GRCh37	DELETION	LRP1 (NM_002332) GLI1 (NM_005269) rearrangement: c.3163+277_c.1188del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LRP1:GLI1}	298520	NA	0	41	10	44
P-0018453-T01-IM6	SOMATIC	GUCA1C	BCL6	3	3	108661942	187443445	Intron of GUCA1C(-):10Kb after exon 1	Intron of BCL6(-):28bp before exon 8	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement : g.108661942_c.1709-28:BCL6inv	IMPPRECISE		MANUAL_OK	3to3	-	78781503	NA	0	17	0	17
P-0018461-T01-IM6	SOMATIC	TPT1	RB1	13	13	45902093	48937023	IGR: 6Kb before TPT1(-)	Exon 8 of RB1(+)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement : g.45902093_c.791:RB1inv	PRECISE		MANUAL_OK	3to3	-	3034930	NA	0	75	10	75
P-0018462-T01-IM6	SOMATIC	TP53	TP53	17	17	7577044	7578533	Exon 8 of TP53(-)	Exon 5 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.397_c.894del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1489	NA	0	37	10	40
P-0018464-T01-IM6	SOMATIC	HIST1H1E	HIST1H3G	6	6	26153113	26271528	IGR: 3Kb before HIST1H1E(+)	Exon 1 of HIST1H3G(-)	GRCh37	DELETION	HIST1H3G (NM_003534) rearrangement: c.85_chr6:g.26153113del	PRECISE		MANUAL_OK	3to5	-	118415	NA	0	24	10	25
P-0018470-T01-IM6	SOMATIC	EP300	EP300	22	22	41560106	41562435	Exon 22 of EP300(+)	Intron of EP300(+):167bp before exon 23	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3778_c.3807-168del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2329	NA	0	39	10	84
P-0018487-T01-IM6	SOMATIC	CYLD	SPACA7	16	13	50813791	113008750	Exon 8 of CYLD(+)	IGR: 22Kb before SPACA7(+)	GRCh37	TRANSLOCATION	CYLD (NM_001042355) - SPACA7 (NM_145248) rearrangement: t(13, 16)( q12.1, q34)(chr13:g.113008750::chr16:g.50813791)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	9	10	9
P-0018489-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823645	42873976	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 2-11): c.56-3860:TMPRSS2_c.40-6101:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3050331	NA	0	11	10	11
P-0018490-T01-IM6	SOMATIC	CDKN2A	IZUMO3	9	9	21970952	24391640	Exon 2 of CDKN2A(-)	IGR: 152Kb before IZUMO3(-)	GRCh37	INVERSION	CDKN2Ap16INK4A(NM_000077) rearrangement: c.406:CDKN2Ap16INK4A_chr9:g.24391640inv	PRECISE		MANUAL_OK	3to3	-	2420688	NA	0	45	10	44
P-0018491-T01-IM6	SOMATIC	FANCA	KPNA6	16	1	89882968	32575989	Exon 1 of FANCA(-)	Intron of KPNA6(+):2Kb after exon 1	GRCh37	TRANSLOCATION	FANCA (NM_000135) - KPNA6 (NM_012316) rearrangement: t(1, 16)(p35.1, q24.3)(chr1:g.32575989::chr16:g.89882968	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FANCA:KPNA6}	0	NA	0	28	10	43
P-0018498-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120484441	120521890	Intron of NOTCH2(-):64bp before exon 18	Intron of NOTCH2(-):8Kb after exon 5	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: chr1:g.120484441:NOTCH1_chr1:g.120521890del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	37449	NA	0	15	10	17
P-0018498-T01-IM6	SOMATIC	NCOR1	KIF26A	17	14	15978935	104672507	Exon 27 of NCOR1(-)	IGR: 67Kb before KIF26A(+)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - KIF26A (NM_01565) rearrangement: t(14, 17)(q32.33, p12)(chr14:g.104672507::chr17:g.15978935)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	47	10	49
P-0018508-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684479	128653753	Intron of EWSR1(+):115bp before exon 9	Intron of FLI1(+):2Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused in-frame with FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128653753::chr22:g.29684479)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	96	10	106
P-0018510-T01-IM6	SOMATIC	ALK	ALK	2	2	29462485	29469291	Intron of ALK(-):60bp after exon 13	Intron of ALK(-):5Kb after exon 12	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.2355+61_c.2204+4680dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	6806	NA	0	20	10	20
P-0018513-T01-IM6	SOMATIC	ROS1	CD74	6	5	117647544	149783804	Exon 33 of ROS1(-)	Intron of CD74(-):438bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 33 to 43): t(5;6)(q32;q22.1)(chr5:g.149783804::chr6:g.117647544)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	116	10	126
P-0018515-T01-IM6	SOMATIC	ARX	RBM10	X	X	25210520	47045666	IGR: 189Kb before ARX(-)	Exon 23 of RBM10(+)	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: chrX:g.25210520_c.2742:RBM10del	PRECISE		MANUAL_OK	3to5	-	21835146	NA	0	68	10	71
P-0018519-T01-IM6	SOMATIC	NF1	KRT23	17	17	29676110	39066802	Intron of NF1(+):27bp before exon 49	IGR: 12Kb before KRT23(-)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.7190-28:NF1_chr17:g.39066802inv	PRECISE		MANUAL_OK	5to5	-	9390692	NA	0	11	10	15
P-0018524-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42873801	140490337	Intron of TMPRSS2(-):4Kb before exon 2	Intron of BRAF(-):3Kb before exon 9	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - BRAF (NM_004333) Rearrangement : t(21;7)(q22.3;q34)(chr21:g.42873801::chr7:g.140490337)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS2:BRAF}	0	NA	0	89	10	98
P-0018530-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684272	128643225	Intron of EWSR1(+):322bp before exon 9	Intron of FLI1(+):345bp after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-8 fused with FLI1 exons 5-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128643225::chr22:g.29684272)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	54	0	60
P-0018536-T01-IM6	SOMATIC	KMT2C	PRDM1	7	6	151891246	106189129	Intron of KMT2C(-):33bp before exon 31	IGR: 345Kb before PRDM1(+)	GRCh37	TRANSLOCATION	KMT2C (NM_170606)  Rearrangement :  t(6;7)(q21;q36.1)(chr6:g.106189129::chr7:g.151891246)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	65	10	64
P-0018537-T01-IM6	SOMATIC	NOTCH4	PEX6	6	6	32166999	42947466	Intron of NOTCH4(-):77bp before exon 24	Promoter of PEX6(-):16Kb from tx start	GRCh37	DELETION	NOTCH4 (NM_004557) Rearrangement : c.-578:PEX6_c.4316-77:NOTCH4del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {PEX6:NOTCH4}	10780467	NA	0	20	10	19
P-0018541-T01-IM6	SOMATIC	ALK	LRP1B	2	2	29450289	142098194	Intron of ALK(-):150bp after exon 17	Intron of LRP1B(-):86Kb before exon 4	GRCh37	DUPLICATION	ALK (NM_004304) - LRP1B (NM_018557) Rearrangement : c.2914+151:ALK_c.344-85984:LRP1Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ALK:LRP1B}	112647905	NA	0	2	9	2
P-0018555-T01-IM6	SOMATIC	PPP6C	PPP6C	9	9	127912200	127915812	Exon 7 of PPP6C(-)	Exon 6 of PPP6C(-)	GRCh37	DELETION	PPP6C (NM_002721) rearrangements: c.669_c.670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3612	NA	0	3	10	3
P-0018556-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30971376	31022343	Intron of ASXL1(+):14Kb after exon 3	Exon 12 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.252+14450_c.1828dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	50967	NA	0	15	10	15
P-0018568-T01-IM6	SOMATIC	STAT3	EZH1	17	17	40502896	40855737	5-UTR of STAT3(-):35Kb before coding start	Intron of EZH1(-):20bp after exon 19	GRCh37	DELETION	EZH1 (NM_001991) - STAT3 (NM_139276) rearrangement: c.2098+21:EZH1_c.-23-2339:STAT3del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {EZH1:STAT3}	352841	NA	0	54	10	59
P-0018568-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139365807	139391519	Intron of SEC16A(-):619bp after exon 4	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) - SEC16A (NM_014866) rearrangement: c.6672:NOTCH1_c.3704+620:SEC16Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	25712	NA	0	78	10	87
P-0018573-T01-IM6	SOMATIC	ALK	EML4	2	2	29474011	42523979	Exon 12 of ALK(-)	Intron of EML4(+):1Kb after exon 12	GRCh37	DELETION	ALK (NM_004304) - EML4(NM_019063) rearrangement: c.2164_c.1489+1323del	PRECISE		MANUAL_OK	3to5	-	13049968	NA	0	52	10	55
P-0018575-T01-IM6	SOMATIC	NF1	RHOT1	17	17	29652955	30542921	Exon 37 of NF1(+)	Intron of RHOT1(+):8Kb after exon 18	GRCh37	DELETION	NF1 (NM_001042492) - RHOT1 (NM_001033568) rearrangement: c.4953:NF1_c.1958+4664:RHOT1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:RHOT1}	889966	NA	0	55	10	58
P-0018575-T01-IM6	SOMATIC	CDK12	ARAP2	17	4	37618733	35688798	Exon 1 of CDK12(+)	IGR: 379Kb before ARAP2(-)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(4;17)(p15.1;q12)(chr4:g.35688798::chr17:g.37618733)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	98	10	104
P-0018576-T01-IM6	SOMATIC	ASIC2	LYN	17	8	32040644	56911063	Intron of ASIC2(-):442Kb after exon 1	Intron of LYN(+):5bp after exon 11	GRCh37	TRANSLOCATION	LYN (NM_002350) rearrangement: t(8;17)(q12.1;q12)(chr8:g.56911063::chr17:g.32040644)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	6	10	6
P-0018577-T01-IM6	SOMATIC	RARA	GSDMC	17	8	38499355	130776535	Intron of RARA(+):5Kb before exon 3	Intron of GSDMC(-):1Kb after exon 4	GRCh37	TRANSLOCATION	RARA (NM_000964) - GSDMC (NM_031415) rearrangement: t(8;17)(q24.21;q21.2)(chr8:g.130776535::chr17:g.38499355)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RARA:GSDMC}	0	NA	0	12	10	7
P-0018577-T01-IM6	SOMATIC	PRDM14	LOC102724710	8	8	70980836	93352111	Intron of PRDM14(-):69bp before exon 3	IGR: 226Kb before LOC102724710(-)	GRCh37	DELETION	PRDM14 (NM_024504) rearrangement: c.701-69_g.93352111del	PRECISE		MANUAL_OK	3to5	-	22371275	NA	0	67	10	84
P-0018581-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861458	42868059	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.127-1554:TMPRSS2_c.18+8829:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3006601	NA	0	94	10	100
P-0018582-T01-IM6	SOMATIC	BRD4	SMIM7	19	19	15355388	16759391	Exon 13 of BRD4(-)	Intron of SMIM7(-):1Kb before exon 5	GRCh37	DELETION	SMIM7 (NM_024104.3) - BRD4 (NM_058243) rearrangement: c.213-1319:SMIM7_c.2235:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMIM7:BRD4}	1404003	NA	0	20	10	19
P-0018594-T01-IM6	SOMATIC	WT1	WT1	11	11	32427683	32439233	Intron of WT1(-):6Kb before exon 6	Intron of WT1(-):33bp before exon 4	GRCh37	DUPLICATION	WT1 (NM_024426) Rearrangement : c.873-33_c.1002-6093dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	11550	NA	0	92	10	116
P-0018594-T01-IM6	SOMATIC	EXOC4	KMT2C	7	7	132968048	151878883	Intron of EXOC4(+):6Kb before exon 3	Exon 36 of KMT2C(-)	GRCh37	INVERSION	EXOC4 (NM_021807) - KMT2C (NM_170606) Rearrangement : c.277-5628:EXOC4_c.6062:KMT2Cinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EXOC4:KMT2C}	18910835	NA	0	65	10	64
P-0018594-T01-IM6	SOMATIC	ATP12A	FUBP1	13	1	25287568	78430719	Promoter of ATP12A(+):33Kb from tx start	Intron of FUBP1(-):33bp after exon 8	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) Rearrangement : t(1,13)(p31.1q12.13)(chr1:g.78430719::chr13:g.25287568)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {FUBP1:ATP12A}	0	NA	0	14	10	19
P-0018598-T02-IM6	SOMATIC	CEBPA	PEPD	19	19	33792465	33972886	Exon 1 of CEBPA(-)	Intron of PEPD(-):4Kb before exon 7	GRCh37	DELETION	PEPD (NM_000285) - CEBPA (NM_004364) rearrangement: c.504-3890:PEPD_c.856:CEBPAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PEPD:CEBPA}	180421	NA	0	15	10	16
P-0018598-T02-IM6	SOMATIC	CIC	CIC	19	19	42796573	42800149	Exon 13 of CIC(+)	Promoter of CIC(+):11Kb from tx start	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3130_c.*806inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3576	NA	0	13	10	13
P-0018608-T01-IM6	SOMATIC	ZNF43	KMT2B	19	19	22025862	36221028	Intron of ZNF43(-):9Kb after exon 1	Intron of KMT2B(+):2bp after exon 23	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: chr19:g.22025862_c.5076+2:KMT2Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {KMT2B:ZNF43}	14195166	NA	0	18	10	18
P-0018624-T01-IM6	SOMATIC	SMAD6	SMAD3	15	15	67152286	67477032	IGR: 158Kb before SMAD6(+)	Intron of SMAD3(+):32bp before exon 7	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: g.67152286_c.872-33del	PRECISE		MANUAL_OK	3to5	-	324746	NA	0	7	10	7
P-0018626-T01-IM6	SOMATIC	SH2B3	LINC01021	12	5	111856053	27195354	Exon 2 of SH2B3(+)	IGR: 277Kb before LINC01021(+)	GRCh37	TRANSLOCATION	SH2B3 (NM_005475) rearrangement: t(5;12)(p14.1;q24.12)(chr5:g.27195354::chr12:g.111856053)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	62	0	69
P-0018630-T01-IM6	SOMATIC	TSPAN18	JAK2	11	9	44939223	5044464	Intron of TSPAN18(+):299bp before exon 5	Exon 5 of JAK2(+)	GRCh37	TRANSLOCATION	JAK2 (NM_004972) rearrangement: t(9;11)(q24.12;p11.2)(chr9:g.5044464::chr11:g.44939223)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	10	46
P-0018631-T01-IM6	SOMATIC	LINC01013	EPAS1	6	2	132459893	46611767	5-UTR of LINC01013(+):31Kb before coding start	Exon 16 of EPAS1(+)	GRCh37	TRANSLOCATION	EPAS1 (NM_001430) rearrangement: t(2;6)(p21;q23.2)(chr2:g.46611767::chr6:g.132459893)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EPAS1:LINC01013}	0	NA	0	33	10	33
P-0018647-T01-IM6	SOMATIC	CARM1	DOCK6	19	19	11031891	11359808	Intron of CARM1(+):88bp after exon 14	Intron of DOCK6(-):981bp before exon 7	GRCh37	DELETION	CARM1 (NM_199141) Rearrangement : c.1615+88:CARM1_c.721-981:DOCK6del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	327917	NA	0	16	10	15
P-0018647-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63373392	63411523	IGR: 32Kb before AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) Rearrangement : chrX:g.63373392_c.1644:AMER1del	PRECISE		MANUAL_OK	3to5	-	38131	NA	0	7	10	7
P-0018660-T01-IM6	SOMATIC	RTEL1	ARFRP1	20	20	62325750	62333207	Exon 31 of RTEL1(+)	Exon 5 of ARFRP1(-)	GRCh37	DELETION	RTEL1 (NM_032957) Rearrangement : c.3090:RTEL1_c.392:ARFRP1del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	7457	NA	0	12	10	12
P-0018663-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684132	128658406	Intron of EWSR1(+):462bp before exon 9	Intron of FLI1(+):6Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) Fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128658406::chr22:g.29684132)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	25	10	27
P-0018667-T01-IM6	SOMATIC	ARID1A	AHDC1	1	1	27087625	27852005	Intron of ARID1A(+):38bp after exon 5	IGR: 9Kb before AHDC1(-)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2161+38_g.27852005del	PRECISE		MANUAL_OK	3to5	-	764380	NA	1	30	10	28
P-0018668-T01-IM6	SOMATIC	DRG1	POLE	22	12	31791989	133257281	IGR: 4Kb before DRG1(+)	Intron of POLE(-):8bp before exon 3	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(12;22)(q24.33;q12.2)(chr12:g.133257281::chr22:g.31791989)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	28	10	39
P-0018673-T01-IM6	SOMATIC	ZNF354C	CSDE1	5	1	178509649	115260825	Promoter of ZNF354C(+):22Kb from tx start	Exon 21 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(8;13)(p11.23;q12.3)(chr8:g.38175374::chr13:g.30470955)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	10	0	12
P-0018690-T01-IM6	SOMATIC	MAP3K1	SERINC5	5	5	56176622	79481066	Exon 12 of MAP3K1(+)	Intron of SERINC5(-):7Kb before exon 3	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.2172:MAP3K1_chr5:g.79481066del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	23304444	NA	0	23	10	23
P-0018693-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29669607	29688035	Intron of EWSR1(+):122bp before exon 4	Intron of EWSR1(+):90bp before exon 11	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.103-123_c.1028-91del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	18428	NA	0	6	10	6
P-0018695-T01-IM6	SOMATIC	PREX2	UTRN	8	6	69143556	144991818	Intron of PREX2(+):11bp before exon 40	Intron of UTRN(+):8Kb before exon 51	GRCh37	TRANSLOCATION	UTRN (NM_007124) - PREX2 (NM_024870) rearrangement: t(6;8)(q24.2;q13.2)(chr6:g.144991818::chr8:g.69143556)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {UTRN:PREX2}	0	NA	0	49	10	51
P-0018700-T01-IM6	SOMATIC	LOC101927058	KMT2D	12	12	43055129	49434250	IGR: 46Kb before LOC101927058(-)	Exon 31 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: chr12:g.43055129_c.7303:KMT2Ddel	PRECISE		MANUAL_OK	3to5	-	6379121	NA	0	10	10	10
P-0018704-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39883908	42872458	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMRPSS2 exon 1 fused with ERG exons 4-11): c.56-2342:TMPRSS2_c.39+63678:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2988550	NA	0	49	10	55
P-0018710-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48526969	48603108	IGR: 30Kb before SMAD4(+)	Exon 11 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: chr18:g.48526969_c.1409del	PRECISE		MANUAL_OK	3to5	-	76139	NA	0	17	10	17
P-0018711-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141551299	141552447	Exon 15 of AGO2(-)	Intron of AGO2(-):990bp before exon 15	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.1840-990_c.1998del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1148	NA	0	74	10	84
P-0018712-T01-IM6	SOMATIC	NF1	NF1	17	17	29544716	29556621	Intron of NF1(+):1Kb before exon 14	Intron of NF1(+):138bp after exon 21	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1528-1307_c.2850+138dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	11905	NA	0	2	8	2
P-0018713-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878175	42867931	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMRPSS2 exon 1 fused with ERG exons 4-11): c.127-1426:TMPRSS2_c.40-60631:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2989756	NA	0	35	10	35
P-0018761-T01-IM6	SOMATIC	LINC01440	GNAS	20	20	54110650	57485104	IGR: 71Kb before LINC01440(+)	Exon 11 of GNAS(+)	GRCh37	DELETION	GNAS (NM_000516) Rearrangement : c.938:GNAS_chr20:g.54110650del	PRECISE		MANUAL_OK	3to5	-	3374454	NA	0	10	10	12
P-0018762-T01-IM6	SOMATIC	MIR6130	NTRK2	9	9	76176286	87476186	IGR: 192Kb before MIR6130(-)	Intron of NTRK2(+):184bp after exon 15	GRCh37	INVERSION	NTRK2 (NM_006180) Rearrangement : chr9:g.76176286_c.1444+184:NTRK2del	PRECISE		MANUAL_OK	5to5	-	11299900	NA	0	2	7	3
P-0018767-T02-IM6	SOMATIC	RBM10	TFE3	X	X	47043691	48895676	Intron of RBM10(+):762bp before exon 18	Intron of TFE3(-):37bp before exon 5	GRCh37	INVERSION	RBM10 (NM_001204468) - TFE3 (NM_006521) fusion (RBM10 exon 17 fused to TFE3 exon 5): c.2146-763:RBM10_c.781-37:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBM10:TFE3}	1851985	NA	0	63	10	65
P-0018769-T02-IM6	SOMATIC	CIC	NDST3	19	4	42799251	118760520	Exon 20 of CIC(+)	IGR: 195Kb before NDST3(+)	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(4;19)(q26;q13.2)(chr4:g.118760520::chr19:g.42799251)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	23	0	24
P-0018785-T01-IM6	SOMATIC	CTNNA3	TET1	10	10	67822713	70404575	Intron of CTNNA3(-):6Kb after exon 15	Exon 4 of TET1(+)	GRCh37	INVERSION	TET1 (NM_030625) - CTNNA3 (NM_013266) rearrangement: c.2089:TET1_c.2159+6353:CTNNA3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TET1:CTNNA3}	2581862	NA	0	88	10	88
P-0018785-T01-IM6	SOMATIC	KCNJ18	FGFR2	17	10	21369673	123240775	IGR: 61Kb before KCNJ18(+)	Intron of FGFR2(-):1Kb before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;17)(q26.13;p11.2)(chr10:g.123240775::chr17:g.21369673)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	213	10	260
P-0018791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856547	42873025	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1 fused to ERG exons 2-10): c.56-2909:TMPRSS2_c.18+13740:ERGdel	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3016478	NA	0	58	10	72
P-0018793-T01-IM6	SOMATIC	CREBBP	LCMT1	16	16	3823850	25130413	Exon 13 of CREBBP(-)	Intron of LCMT1(+):7Kb after exon 1	GRCh37	INVERSION	CREBBP (NM_004380) - LCMT1 (NM_016309) rearrangement: c.2365:CREBBP_c.113+7096:LCMT1	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CREBBP:LCMT1}	21306563	NA	0	24	10	32
P-0018793-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55145206	55223384	Intron of EGFR(+):58Kb after exon 1	Intron of EGFR(+):138bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.88+58148_c.890-139del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	78178	NA	0	118	10	137
P-0018797-T01-IM6	SOMATIC	TFE3	PRCC	X	1	48896065	156764794	Intron of TFE3(-):98bp before exon 4	Intron of PRCC(+):194bp after exon 5	GRCh37	TRANSLOCATION	PRCC (NM_005973) - TFE3 (NM_006521) fusion (PRCC exons 1-5 fused to TFE3 exons 4-10): t(1;X)(q23.1;p11.23)(chr1:g.149782871::chrX:g.117650623)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PRCC:TFE3}	0	NA	0	21	10	19
P-0018798-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39837165	42872271	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2155:TMPRSS2_c.19-19621:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3035106	NA	0	34	10	35
P-0018798-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151754651	151833986	5-UTR of GALNT11(+):37Kb before coding start	Exon 59 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement : g.151754651_c.14667:KMT2Cinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GALNT11:KMT2C}	79335	NA	0	21	10	35
P-0018800-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123006554	123239459	IGR: 231Kb before FGFR2(-)	Exon 18 of FGFR2(-)	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: g.123006554_c.2378:FGFR2del	PRECISE		MANUAL_OK	3to5	-	232905	NA	0	63	10	63
P-0018812-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39828260	42868392	Intron of ERG(-):11Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1654:TMPRSS2_c.19-10716:ERGinv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3040132	NA	0	20	10	34
P-0018812-T01-IM6	SOMATIC	MAP3K1	PDE4D	5	5	56160676	58660003	Exon 4 of MAP3K1(+)	Intron of PDE4D(-):148Kb before exon 4	GRCh37	DUPLICATION	MAP3K1 (NM_005921) - PDE4D (NM_001104631) rearrangement: c.950:MAP3K1_c.456-148209:PDE4Ddup	PRECISE		MANUAL_OK	5to3	-	2499327	NA	0	17	10	17
P-0018812-T01-IM6	SOMATIC	SLC28A3	NTRK2	9	9	86817107	87478178	IGR: 74Kb before SLC28A3(-)	Intron of NTRK2(+):2Kb after exon 15	GRCh37	DUPLICATION	NTRK2 (NM_006180)  rearrangement: chr9:g.86817107_c.1444+2176dup	PRECISE		MANUAL_OK	5to3	-	661071	NA	0	10	10	11
P-0018833-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67196172	67197388	Intron of RPS6KB2(+):78bp after exon 1	Intron of RPS6KB2(+):322bp after exon 4	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement : c.78+78_c.309+322inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1216	NA	0	4	6	4
P-0018834-T01-IM6	SOMATIC	DICER1	VRK1	14	14	95562408	97177167	Exon 25 of DICER1(-)	IGR: 87Kb before VRK1(+)	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.4849:DICER1_g.97177167del	PRECISE		MANUAL_OK	3to5	-	1614759	NA	0	13	10	14
P-0018848-T01-IM6	SOMATIC	HGF	HGF	7	7	81368838	81381588	Intron of HGF(-):4Kb after exon 7	Intron of HGF(-):10bp before exon 5	GRCh37	DUPLICATION	HGF (NM_000601) Rearrangement : c.483-10_c.865+3831dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	12750	NA	0	11	10	11
P-0018868-T01-IM6	SOMATIC	IRS2	GAS6	13	13	110435409	114550128	Exon 1 of IRS2(-)	Intron of GAS6(-):566bp before exon 4	GRCh37	DELETION	GAS6 (NM_000820) - IRS2 (NM_003749) Rearrangement : c.281-566:GAS6_c.2992:IRS2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GAS6:IRS2}	4114719	NA	0	3	10	3
P-0018870-T01-IM6	SOMATIC	CTNNB1	EXOSC7	3	3	41278000	45025339	Intron of CTNNB1(+):10bp after exon 12	Intron of EXOSC7(+):5Kb before exon 2	GRCh37	DUPLICATION	EXOSC7 (NM_015004) - CTNNB1 (NM_001904) Rearrangement : c.58-5293:EXOSC7_c.1954+10:CTNNB1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EXOSC7:CTNNB1}	3747339	NA	0	10	10	10
P-0018884-T01-IM6	SOMATIC	STAT5B	TMEM117	17	12	40362409	44526156	Intron of STAT5B(-):11bp after exon 14	Intron of TMEM117(+):11Kb before exon 4	GRCh37	TRANSLOCATION	STAT5B (NM_012448) rearrangement: t(12;17)(q12;q21.2)(chr12:g.44526156::chr17:g.40362409)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	79	10	84
P-0018884-T01-IM6	SOMATIC	EZH1	SLC25A21	17	14	40861718	37307122	Intron of EZH1(-):145bp after exon 13	Intron of SLC25A21(-):24Kb before exon 3	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(14;17)(q13.3;q21.2)(chr14:g.37307122::chr17:g.40861718)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	10	8
P-0018884-T01-IM6	SOMATIC	RABEP1	ERBB2	17	17	5279381	37868268	Intron of RABEP1(+):1Kb before exon 14	Exon 8 of ERBB2(+)	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: chr17:g.5279381_c.989:ERBB2inv	PRECISE		MANUAL_OK	5to5	-	32588887	NA	0	23	10	37
P-0018884-T01-IM6	SOMATIC	EPHA7	FHL5	6	6	94120879	97045067	Exon 3 of EPHA7(-)	5-UTR of FHL5(+):6Kb before coding start	GRCh37	INVERSION	EPHA7 (NM_004440) rearrangement: c.172:EPHA7_chr6:g.97045067inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FHL5:EPHA7}	2924188	NA	0	48	10	48
P-0018884-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974560	21979785	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):9Kb before exon 2	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.-4959_c.150+117inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5225	NA	0	68	10	121
P-0018889-T01-IM6	SOMATIC	FGFR4	NSD1	5	5	176522403	176627216	Exon 12 of FGFR4(+)	Intron of NSD1(+):4Kb before exon 4	GRCh37	DUPLICATION	NSD1 (NM_022455) - FGFR4 (NM_213647) rearrangement: c.1064-3905:NSD1_c.1592:FGFR4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NSD1:FGFR4}	104813	NA	0	3	6	3
P-0018893-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101859374	101867503	IGR: 8Kb before TGFBR1(+)	Exon 1 of TGFBR1(+)	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: chr9:g.101859374_c.16del	PRECISE		MANUAL_OK	3to5	-	8129	NA	0	5	10	5
P-0018896-T01-IM6	SOMATIC	ERBB2	ARHGAP42	17	11	37879868	100478828	Exon 18 of ERBB2(+)	IGR: 80Kb before ARHGAP42(+)	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(11;17)(q22.1;q12)(chr11:g.100478828::chr17:g.37879868)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	37	10	89
P-0018899-T01-IM6	SOMATIC	CIC	MEGF8	19	19	42794799	42854313	Exon 10 of CIC(+)	Exon 14 of MEGF8(+)	GRCh37	DELETION	CIC (NM_015125) - MEGF8 (NM_001410) rearrangement: c.1879:CIC_c.2312:MEGF8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CIC:MEGF8}	59514	NA	0	60	10	64
P-0018908-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	494907	496320	Intron of KDM5A(-):155bp after exon 2	Intron of KDM5A(-):1Kb before exon 2	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.166-1180_c.243+156inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1413	NA	0	15	10	15
P-0018911-T01-IM6	SOMATIC	SLC7A1	IRS2	13	13	30204103	110434970	IGR: 121Kb before SLC7A1(-)	Exon 1 of IRS2(-)	GRCh37	INVERSION	IRS2 (NM_003749) rearrangement: chr13:g.30204103_c.3431inv	IMPPRECISE		MANUAL_OK	5to5	-	80230867	NA	0	42	0	95
P-0018920-T01-IM6	SOMATIC	FGFR2	AHCYL1	10	1	123242706	110531185	Intron of FGFR2(-):505bp after exon 17	Intron of AHCYL1(+):3Kb after exon 1	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - AHCYL1 (NM_006621) fusion (FGFR2 exons 1-17 fused in-frame with AHCYL1 exons 2-17): t(1;10)(p13.3;q26.13)(chr1:g.110531185::chr10:g.123242706)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:AHCYL1}	0	NA	0	17	0	27
P-0018921-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21965892	21968670	Promoter of CDKN2A(-):2Kb from tx start	Intron of CDKN2A(-):429bp before exon 3	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.*2336_c.458-429del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2778	NA	0	42	10	45
P-0018925-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2135890	2136748	Intron of TSC2(+):303bp before exon 37	Exon 38 of TSC2(+)	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.4663-304C>T_c.4865inv	PRECISE		MANUAL_OK	5to5	-	858	NA	0	3	5	4
P-0018926-T01-IM6	SOMATIC	EFCAB5	RNF43	17	17	28373090	56440963	Intron of EFCAB5(+):5Kb before exon 9	Intron of RNF43(-):2bp before exon 4	GRCh37	INVERSION	EFCAB5 (NM_198529) - RNF43 (NM_017763) rearrangement: c.1201-5046:EFCAB5_c.376-2:RNF43inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EFCAB5:RNF43}	28067873	NA	0	20	10	20
P-0018927-T01-IM6	SOMATIC	MAGIX	KDM5C	X	X	49026495	53222970	Promoter of MAGIX(+):7Kb from tx start	Exon 24 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: chrX:g.49026495_c.4102del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4196475	NA	0	46	10	48
P-0018931-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11119679	11121194	Intron of SMARCA4(+):980bp after exon 14	Exon 15 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2123+980_c.2261del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1515	NA	0	8	0	8
P-0018933-T01-IM6	SOMATIC	KMT2D	SYT1	12	12	49421101	79449220	Exon 48 of KMT2D(-)	5-UTR of SYT1(+):162Kb before coding start	GRCh37	INVERSION	SYT1 (NM_001135806) - KMT2D (NM_003482) rearrangement: c.-18+8078:SYT1_c.14648:KMT2Dinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SYT1:KMT2D}	30028119	NA	0	21	10	21
P-0018968-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141561553	141610897	Intron of AGO2(-):18bp before exon 11	Intron of AGO2(-):15Kb before exon 2	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.23-15487_c.1270-18del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : out of frame	49344	NA	0	23	10	23
P-0018969-T01-IM6	SOMATIC	ALK	EML4	2	2	29448416	42527621	Exon 19 of ALK(-)	Intron of EML4(+):759bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-760:EML4_c.3083:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13079205	NA	0	21	10	19
P-0018970-T01-IM6	SOMATIC	INPP4A	MGAT4A	2	2	99169298	99302269	Exon 15 of INPP4A(+)	Intron of MGAT4A(-):7Kb before exon 3	GRCh37	DELETION	INPP4A (NM_001134224) - MGAT4A (NM_012214) rearrangement: c.1228:INPP4A_c.95-7335:MGAT4Adel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	132971	NA	0	5	8	5
P-0018979-T01-IM6	SOMATIC	MAP2K2	DNM2	19	19	4101322	10861707	Intron of MAP2K2(-):44bp before exon 5	Intron of DNM2(+):9Kb before exon 2	GRCh37	INVERSION	DNM2 (NM_001005361) - MAP2K2 (NM_030662) rearrangement: c.162-8707:DNM2_c.529-44:MAP2K2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {DNM2:MAP2K2}	6760385	NA	0	5	10	5
P-0018982-T01-IM6	SOMATIC	AP3D1	DOT1L	19	19	2127761	2226177	Intron of AP3D1(-):561bp before exon 9	Intron of DOT1L(+):4bp before exon 27	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: chr19:g.2127761_c.3662-5del	PRECISE		MANUAL_OK	3to5	-	98416	NA	0	71	10	96
P-0018985-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33287893	33289429	Exon 5 of DAXX(-)	Intron of DAXX(-):66bp after exon 2	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.243+67_c.1396inv	PRECISE		MANUAL_OK	3to3	-	1536	NA	0	4	10	4
P-0018986-T01-IM6	SOMATIC	PRKCI	SKIL	3	3	170009655	170089408	Exon 13 of PRKCI(+)	Intron of SKIL(+):10Kb before exon 4	GRCh37	DUPLICATION	SKIL (NM_001248008) - PRKCI (NM_002740) rearrangement: c.1099-9624:SKIL_c.1217:PRKCIdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SKIL:PRKCI}	79753	NA	0	5	10	8
P-0018987-T01-IM6	SOMATIC	ATRX	NSD1	X	5	76752806	176638676	IGR: 8Kb before ATRX(-)	Exon 5 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(X;5)(q21.2;q35.3)(chrX:g.76752806::chr5:g.176638676)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	4
P-0019022-T02-IM6	SOMATIC	SPEN	ZCCHC11	1	1	16202966	52985135	Exon 3 of SPEN(+)	Intron of ZCCHC11(-):3Kb before exon 3	GRCh37	INVERSION	SPEN (NM_015001) - ZCCHC11 (NM_001009881) rearrangement : c.674:SPEN_c.719-3409:ZCCHC11inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SPEN:ZCCHC11}	36782169	NA	0	2	10	2
P-0019022-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27089483	27099760	Exon 8 of ARID1A(+)	Intron of ARID1A(+):76bp before exon 15	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.2439_c.3716-77dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10277	NA	0	59	10	66
P-0019022-T02-IM6	SOMATIC	FGFR3	GRK4	4	4	1795705	2997210	Exon 2 of FGFR3(+)	Intron of GRK4(+):3Kb after exon 3	GRCh37	DUPLICATION	GRK4 (NM_182982) - FGFR3 (NM_000142) rearrangement: c.339+3191:GRK4_c.44:FGFR3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GRK4:FGFR3}	1201505	NA	0	33	10	40
P-0019023-T01-IM6	SOMATIC	FHIT	SHQ1	3	3	59880285	72866236	Intron of FHIT(-):28Kb after exon 8	Intron of SHQ1(-):144bp after exon 7	GRCh37	INVERSION	SHQ1 (NM_018130) rearrangement: chr3:g.59880285_c.882+145:SHQ1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12985951	NA	0	9	10	9
P-0019030-T01-IM6	SOMATIC	PTCD3	BCL2L11	2	2	86352448	111883044	Intron of PTCD3(+):129bp before exon 11	Intron of BCL2L11(+):1Kb after exon 2	GRCh37	DUPLICATION	BCL2L11 (NM_138621) - PTCD3 (NM_017952) rearrangement: c.394+1328:BCL2L11_c.805-130:PTCD3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCL2L11:PTCD3}	25530596	NA	0	15	10	15
P-0019030-T01-IM6	SOMATIC	HIST1H3A	HIST1H3B	6	6	26021830	26032271	Promoter of HIST1H3A(+):1Kb from tx start	Exon 1 of HIST1H3B(-)	GRCh37	DELETION	HIST1H3B (NM_003537) rearrangement: c.18:HIST1H3B_chr6:g.26021830del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10441	NA	0	8	10	8
P-0019032-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488347	57493603	Intron of NAB2(+):47bp before exon 7	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 15-22): c.1469-48:NAB2_c.1691:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5256	NA	0	68	10	67
P-0019039-T01-IM6	SOMATIC	UBE2H	BRAF	7	7	129483786	140499248	Intron of UBE2H(-):5Kb before exon 6	Intron of BRAF(-):913bp after exon 7	GRCh37	DUPLICATION	BRAF (NM_004333) - UBE2H (NM_003344) rearrangement: c.980+914:BRAF_c.299-4611:UBE2Hdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {UBE2H:BRAF}	11015462	NA	0	50	10	56
P-0019055-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264456	41266204	5-UTR of CTNNB1(+):1Kb before coding start	Exon 3 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-1056_c.201del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1748	NA	0	25	10	27
P-0019056-T01-IM6	SOMATIC	NCOR1	ASIC2	17	17	15976861	32043740	Exon 28 of NCOR1(-)	Intron of ASIC2(-):439Kb after exon 1	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement : c.3693:NCOR1_g.32043740inv	PRECISE		MANUAL_OK	3to3	-	16066879	NA	0	43	10	41
P-0019058-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348276	381392	Intron of AXIN1(-):25bp before exon 6	Intron of AXIN1(-):15Kb after exon 2	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.1255-25_c.878+14756del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	33116	NA	0	130	10	175
P-0019058-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59802609	59878513	Intron of BRIP1(-):9Kb before exon 17	Intron of BRIP1(-):100bp after exon 8	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.2380-9185_c.1140+101del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	75904	NA	0	12	10	13
P-0019058-T01-IM6	SOMATIC	ZBTB32	KMT2B	19	19	36188393	36223445	IGR: 15Kb before ZBTB32(+)	Exon 28 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: g.36188393_c.5995del	PRECISE		MANUAL_OK	3to5	-	35052	NA	0	43	10	61
P-0019058-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141542303	141606211	Intron of AGO2(-):52bp before exon 19	Intron of AGO2(-):11Kb before exon 2	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.2472-52_c.23-10801del	PRECISE		MANUAL_OK	3to5	Deletion of 17 exons : out of frame	63908	NA	0	63	10	80
P-0019062-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63411183	63413020	Exon 2 of AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.1984_c.147del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1837	NA	0	24	10	26
P-0019068-T01-IM6	SOMATIC	OTOGL	PRDM1	12	6	80543892	106554248	IGR: 59Kb before OTOGL(+)	Exon 6 of PRDM1(+)	GRCh37	TRANSLOCATION	PRDM1 (NM_001198) rearrangement: t(6;12)(q21;q21.31)(chr6:g.106554248::chr12:g.80543892)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	10
P-0019080-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683811	128663272	Intron of EWSR1(+):688bp after exon 8	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128663272::chr22:g.29683811)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	39	10	42
P-0019088-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153249476	153251350	Exon 9 of FBXW7(-)	Intron of FBXW7(-):413bp before exon 8	GRCh37	INVERSION	FBXW7 (NM_033632) Rearrangement : c.1123-413_c.1302inv	PRECISE		MANUAL_OK	3to3	-	1874	NA	0	14	10	14
P-0019094-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115267044	115268934	Intron of CSDE1(-):421bp before exon 17	Exon 15 of CSDE1(-)	GRCh37	DELETION	CSDE1 (NM_001242891) Rearrangement : c.1676_c.1892-421del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1890	NA	0	18	10	20
P-0019108-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139399927	139418810	Exon 25 of NOTCH1(-)	Intron of NOTCH1(-):379bp before exon 3	GRCh37	INVERSION	NOTCH1 (NM_017617)  Rearrangement : c.141-37_c.4421del	PRECISE		MANUAL_OK	5to5	Antisense Fusion	18883	NA	0	7	10	7
P-0019111-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16048312	16049773	Intron of NCOR1(-):1Kb before exon 11	Exon 10 of NCOR1(-)	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.999_c.1083-1302inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1461	NA	0	14	10	16
P-0019111-T01-IM6	SOMATIC	ROS1	GOPC	6	6	117643452	117891885	Intron of ROS1(-):895bp before exon 35	Intron of GOPC(-):137bp after exon 6	GRCh37	DUPLICATION	ROS1 (NM_002944) - GOPC (NM_020399) rearrangement: c.5642-895:ROS1_c.912+138:GOPCdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ROS1:GOPC}	248433	NA	0	31	0	34
P-0019126-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162614594	162683438	Intron of PARK2(-):8Kb after exon 4	Intron of PARK2(-):118bp after exon 3	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.412+119_c.534+7569del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	68844	NA	0	6	10	6
P-0019127-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138543775	140490657	Intron of KIAA1549(-):2Kb after exon 16	Intron of BRAF(-):3Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused to BRAF exons 9-18): c.5247+2110:KIAA1549_c.1141-3273:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1946882	NA	0	34	10	36
P-0019129-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46178247	46256528	5-UTR of NCOA3(+):73Kb before coding start	Intron of NCOA3(+):35bp after exon 7	GRCh37	DUPLICATION	NCOA3 (NM_181659) rearrangement: c.-98-33680_c.721+35dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	78281	NA	0	33	10	54
P-0019130-T01-IM6	SOMATIC	KDM5A	LINC01252	12	12	463313	11658386	Exon 8 of KDM5A(-)	IGR: 43Kb before LINC01252(+)	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.958_chr12:g.11658386inv	PRECISE		MANUAL_OK	3to3	-	11195073	NA	0	21	10	19
P-0019130-T01-IM6	SOMATIC	MRPS6	TMPRSS2	21	21	35443032	42866482	Promoter of MRPS6(+):3Kb from tx start	Exon 3 of TMPRSS2(-)	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement:  chr21:g.35443032_c.150inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TMPRSS2:MRPS6}	7423450	NA	0	9	10	11
P-0019134-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55208151	55223064	Intron of EGFR(+):2Kb before exon 2	Intron of EGFR(+):458bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-1828_c.890-459del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	14913	NA	0	66	0	71
P-0019136-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1941503	1944064	Exon 9 of WHSC1(+)	Intron of WHSC1(+):3Kb after exon 9	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1879_c.1881+2559del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2561	NA	0	8	10	10
P-0019140-T01-IM6	SOMATIC	MYO1F	DNAJB1	19	19	8589633	14627307	Intron of MYO1F(-):729bp after exon 25	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) - MYO1F (NM_012335) rearrangement: c.763:DNAJB1_c.2854+730:MYO1Fdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJB1:MYO1F}	6037674	NA	0	15	10	15
P-0019144-T01-IM6	SOMATIC	NBEAL2	PBRM1	3	3	47031659	52677196	Intron of NBEAL2(+):576bp after exon 6	Intron of PBRM1(-):67bp after exon 10	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: g.47031659_c.995+68del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5645537	NA	0	3	5	3
P-0019148-T01-IM6	SOMATIC	USP43	NCOR1	17	17	9575917	15968716	Intron of USP43(+):2Kb before exon 4	Intron of NCOR1(-):82bp after exon 33	GRCh37	INVERSION	NCOR1 (NM_006311) - USP43 (NM_153210) rearrangement: c.4951+83:NCOR1_c.741-2291:USP43inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NCOR1:USP43}	6392799	NA	0	15	10	16
P-0019148-T01-IM6	SOMATIC	LINC01115	ERBB4	2	2	843212	212543884	3-UTR of LINC01115(-):21Kb after coding stop	Exon 13 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: g.843212_c.1515:ERBB4del	PRECISE		MANUAL_OK	3to5	-	211700672	NA	0	4	10	18
P-0019150-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430675	78435794	Intron of FUBP1(-):22bp before exon 9	Intron of FUBP1(-):95bp before exon 2	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.637-22_c.121-95del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	5119	NA	0	4	8	4
P-0019153-T01-IM6	SOMATIC	PALB2	ERN2	16	16	23632914	23726499	Intron of PALB2(-):115bp before exon 10	Promoter of ERN2(-):25Kb from tx start	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.2997-115_g.23726499del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ERN2:PALB2}	93585	NA	0	9	10	9
P-0019153-T01-IM6	SOMATIC	RFPL4B	DDR2	6	1	112896512	162730897	IGR: 228Kb before RFPL4B(+)	Intron of DDR2(+):103bp before exon 9	GRCh37	TRANSLOCATION	DDR2 (NM_006182)  rearrangement: t(1;6)(q23.3;q21)(chr1:g.162730897::chr6:g.112896512)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	7
P-0019164-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55129115	55221922	Intron of EGFR(+):42Kb after exon 1	Intron of EGFR(+):77bp after exon 7	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.88+42057_c.889+77del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	92807	NA	0	140	10	576
P-0019169-T01-IM6	SOMATIC	ROS1	DCBLD1	6	6	117643988	117884973	Intron of ROS1(-):1Kb before exon 35	Intron of DCBLD1(+):6Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-1431:ROS1_chr6:g.117884973del	PRECISE		MANUAL_OK	3to5	-	240985	NA	0	51	10	53
P-0019182-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487665	57493511	Intron of NAB2(+):284bp after exon 6	Intron of STAT6(-):38bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused in frame with STAT6 exons 16-22): c.1468+284:NAB2_c.1744+39:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5846	NA	0	18	10	17
P-0019189-T01-IM6	SOMATIC	CTCF	RLTPR	16	16	67660575	67682957	Exon 8 of CTCF(+)	Intron of RLTPR(+):21bp before exon 18	GRCh37	DELETION	CTCF (NM_006565) rearrangement: c.1475:CTCF_chr16:g.67682957del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CTCF:RLTPR}	22382	NA	0	8	10	8
P-0019189-T01-IM6	SOMATIC	NPAS1	SRSF2	19	17	47533530	74732784	Intron of NPAS1(+):2Kb before exon 3	Intron of SRSF2(-):96bp after exon 1	GRCh37	TRANSLOCATION	SRSF2 (NM_003016) rearrangement: t(17;19)(q25.1;q13.32)(chr17:g.74732784::chr19:g.47533530)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	14	10	14
P-0019205-T02-IM6	SOMATIC	RBPJL	ROS1	20	6	43949086	117654098	Promoter of RBPJL(+):14Kb from tx start	Intron of ROS1(-):3Kb before exon 32	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;20)(q22.1;q13.12)(chr6:g.117654098::chr20:g.43949086)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	5	10	5
P-0019212-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39822160	42876132	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.55+3745:TMPRSS2_c.19-4616:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3053972	NA	0	53	10	59
P-0019212-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39822160	42876132	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.55+3745:TMPRSS2_c.19-4616:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3053972	NA	0	15	10	15
P-0019212-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39822160	42876132	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exon 2): c.55+3745:TMPRSS2_c.19-4616:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3053972	NA	0	32	10	35
P-0019222-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187437637	187446015	Promoter of BCL6(-):2Kb from tx start	Intron of BCL6(-):132bp after exon 6	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.1540+133_c.*2609inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	8378	NA	0	13	10	13
P-0019222-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176665207	176688372	Intron of NSD1(+):30bp before exon 7	Intron of NSD1(+):1Kb after exon 14	GRCh37	DUPLICATION	NSD1 (NM_022455) rearrangement: c.3922-31_c.5146+1203dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : out of frame	23165	NA	0	12	10	12
P-0019222-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151860388	151867651	Exon 43 of KMT2C(-)	Intron of KMT2C(-):697bp after exon 40	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.9453+698_c.10274dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7263	NA	0	57	10	65
P-0019226-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11999059	12016121	Intron of ETV6(+):7Kb after exon 3	Intron of ETV6(+):6Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.328+6821_c.464-6237del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	17062	NA	0	15	10	16
P-0019236-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87344618	87549161	Intron of NTRK2(+):2Kb after exon 11	Exon 17 of NTRK2(+)	GRCh37	DUPLICATION	NTRK2 (NM_006180) rearrangement: c.1159+1744_c.1718dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	204543	NA	0	4	10	4
P-0019243-T01-IM6	SOMATIC	NF1	PRKG1	17	10	29422402	53522352	Intron of NF1(+):15bp after exon 1	Intron of PRKG1(+):42Kb before exon 4	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - PRKG1 (NM_001098512) rearrangement: t(10;17)(q21.1;q11.2)(chr10:g.53522352::chr17:g.29422402)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NF1:PRKG1}	0	NA	0	74	10	86
P-0019245-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55205319	55221873	Intron of EGFR(+):5Kb before exon 2	Intron of EGFR(+):28bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.89-4660_c.889+28del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	16554	NA	0	59	0	611
P-0019246-T01-IM6	SOMATIC	SMARCA4	LOC100287015	19	8	11100157	5383702	Intron of SMARCA4(+):38bp after exon 7	IGR: 877Kb before LOC100287015(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(8;19)(p23.2;p13.2)(chr8:g.5383702::chr19:g.11100157)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	45	10	46
P-0019246-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148524314	148538709	Exon 7 of EZH2(-)	Intron of EZH2(-):5Kb after exon 3	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.670_c.246+4853del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14395	NA	0	28	10	30
P-0019260-T01-IM6	SOMATIC	ARF3	ERBB3	12	12	49344670	56487070	5-UTR of ARF3(-):12Kb before coding start	Intron of ERBB3(+):58bp before exon 12	GRCh37	INVERSION	ARF3 (NM_001659) - ERBB3 (NM_001982) rearrangement: c.-94+6423:ARF3_c.1275-59:ERBB3inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {ARF3:ERBB3}	7142400	NA	0	23	10	24
P-0019262-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120524253	120529607	Intron of NOTCH2(-):5Kb after exon 5	Exon 5 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.850_c.874+5330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5354	NA	0	4	10	5
P-0019262-T01-IM6	SOMATIC	FUBP3	ABL1	9	9	133484759	133738428	Intron of FUBP3(+):581bp before exon 3	Intron of ABL1(+):6bp after exon 4	GRCh37	DUPLICATION	ABL1 (NM_005157) - FUBP3 (NM_003934) rearrangement: c.822+6:ABL1_c.191-582:FUBP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ABL1:FUBP3}	253669	NA	0	14	10	14
P-0019266-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21968772	21994783	Intron of CDKN2A(-):531bp before exon 3	Promoter of CDKN2B-AS1(+):6bp from tx start	GRCh37	DELETION	CDKN2A (NM_058195, NM_000077) rearrangement: c.-453_c.*102-531del	PRECISE		MANUAL_OK	3to5	-	26011	NA	0	64	10	67
P-0019280-T01-IM6	SOMATIC	POLD1	ADAMTSL1	19	9	50912068	18503608	Exon 15 of POLD1(+)	Intron of ADAMTSL1(+):1Kb before exon 2	GRCh37	TRANSLOCATION	POLD1 (NM_002691) Rearrangement :  t(9,19)(P22.1,q13.4)(chr9:g.18503608:chr19:g.50912068)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	47	10	47
P-0019284-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55197633	55223278	Intron of EGFR(+):12Kb before exon 2	Intron of EGFR(+):244bp before exon 8	GRCh37	DELETION	EGFR vIII (NM_005228) intragenic deletion: c.89-12346_c.890-245del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	25645	NA	0	76	0	874
P-0019285-T01-IM6	SOMATIC	SMAD3	IQCH	15	15	67482820	67660803	Exon 9 of SMAD3(+)	Intron of IQCH(+):4Kb before exon 6	GRCh37	DELETION	SMAD3 (NM_005902)- IQCH (NM_001031715 Rearrangement : c.1224:SMAD3_c.754-3646:IQCHdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMAD3:IQCH}	177983	NA	0	2	5	3
P-0019320-T01-IM6	SOMATIC	RB1	RB1	13	13	48877998	48920951	5-UTR of RB1(+):50bp before coding start	Intron of RB1(+):1Kb before exon 5	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.-51_c.501-1010inv	PRECISE		MANUAL_OK	5to5	-	42953	NA	0	36	10	61
P-0019320-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89391241	89411328	Intron of EPHA3(+):1bp after exon 5	Intron of EPHA3(+):20Kb after exon 5	GRCh37	DELETION	EPHA3 (NM_005233) rearrangement: c.1306+1_c.1306+20088del	PRECISE		MANUAL_OK	3to5	Deletion within intron	20087	NA	0	8	10	7
P-0019324-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42867424	42872183	Intron of TMPRSS2(-):919bp before exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2067_c.127-919inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4759	NA	0	61	10	73
P-0019327-T01-IM6	SOMATIC	NEUROD1	SF3B1	2	2	182577529	198270103	IGR: 37Kb before NEUROD1(-)	Exon 10 of SF3B1(-)	GRCh37	INVERSION	SF3B1 (NM_012433) rearrangement: chr2:g.182577529_c.1333:SF3B1inv	PRECISE		MANUAL_OK	3to3	-	15692574	NA	0	3	10	4
P-0019337-T01-IM6	SOMATIC	EED	EED	11	11	85961451	85964681	Exon 2 of EED(+)	Intron of EED(+):1Kb after exon 3	GRCh37	DELETION	EED (NM_003797) rearrangement: c.228_c.360+1399del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3230	NA	0	46	10	54
P-0019337-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37685612	37687020	Intron of CDK12(+):1Kb before exon 14	Exon 14 of CDK12(+)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3761-1245_c.3924inv	PRECISE		MANUAL_OK	5to5	-	1408	NA	0	82	10	113
P-0019340-T01-IM6	SOMATIC	IFT140	RECQL	16	12	1564105	21644586	Intron of IFT140(-):3Kb before exon 31	Exon 4 of RECQL(-)	GRCh37	TRANSLOCATION	RECQL (NM_032941)  rearrangement: t(12;16)(p12.1;p13.3)(chr12:g.21644586::chr16:g.1564105)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	37	10	38
P-0019346-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27044972	27101570	Intron of ARID1A(+):11Kb before exon 2	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1138-11170_c.4852del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	56598	NA	0	3	10	4
P-0019346-T01-IM6	SOMATIC	NRG1	CD74	8	5	32584466	149782781	Intron of NRG1(+):1Kb before exon 6	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) fusion (CD74 exons 1-7 fused with NRG1 exons 6-13) : t(5;8)(q32;p12)(chr5:g.149782781::chr8:g.32584466)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CD74:NRG1}	0	NA	0	7	10	7
P-0019350-T01-IM6	SOMATIC	THRA	RARA	17	17	38238758	38512285	Intron of THRA(+):1Kb before exon 5	Exon 9 of RARA(+)	GRCh37	DUPLICATION	RARA (NM_000964) - THRA (NM_003250) rearrangement: c.1196:RARA_c.223-1330:THRAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RARA:THRA}	273527	NA	0	27	10	33
P-0019351-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37859674	37883480	Intron of ERBB2(+):3Kb after exon 1	Intron of ERBB2(+):67bp before exon 26	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.73+3110_c.3160-68del	PRECISE		MANUAL_OK	3to5	Deletion of 24 exons : out of frame	23806	NA	0	10	10	10
P-0019351-T01-IM6	SOMATIC	LRP12	MYC	8	8	105527343	128750825	Intron of LRP12(-):6Kb before exon 2	Exon 2 of MYC(+)	GRCh37	INVERSION	MYC (NM_002467) - LRP12 (NM_013437) rearrangement: c.362:MYC_c.137-6041:LRP12inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MYC:LRP12}	23223482	NA	0	7	10	7
P-0019364-T01-IM6	SOMATIC	RASAL2	IKBKE	1	1	178420525	206652369	Intron of RASAL2(+):180bp before exon 10	Exon 10 of IKBKE(+)	GRCh37	DELETION	RASAL2 (NM_170692) - IKBKE(NM_014002) Rearrangement : c.1628-181:RASAL2_c.1076:IKBKEdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RASAL2:IKBKE}	28231844	NA	0	11	10	11
P-0019365-T01-IM6	SOMATIC	TP53	TP53	17	17	7577066	7588780	Exon 8 of TP53(-)	5-UTR of TP53(-):16Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) Rearrangement : c.-29+1915_c.872dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11714	NA	0	9	10	9
P-0019370-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201984432	201985589	Exon 9 of ELF3(+)	3-UTR of ELF3(+):5Kb after coding stop	GRCh37	DELETION	ELF3 (NM_004433)  Rearrangement : c.1097_c.*1138del	PRECISE		MANUAL_OK	3to5	-	1157	NA	0	5	10	5
P-0019375-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55161546	55222601	Intron of EGFR(+):48Kb before exon 2	Intron of EGFR(+):756bp after exon 7	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.89-48433_c.889+756del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	61055	NA	0	16	0	16
P-0019377-T01-IM6	SOMATIC	TIAM1	NOTCH2	21	1	32851230	120510065	5-UTR of TIAM1(-):359Kb before coding start	Exon 8 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;21)(p21;q22.11)(chr1:g.120510065::chr21:g.32851230)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH2:TIAM1}	0	NA	0	9	10	9
P-0019391-T01-IM6	SOMATIC	DNMT1	EIF4A3	19	17	10251361	78114433	Intron of DNMT1(-):95bp after exon 31	Intron of EIF4A3(-):494bp before exon 5	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(17;19)(q25.3;p13.2)(chr17:g.78114433::chr19:g.10251361)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	7	10	7
P-0019406-T01-IM6	SOMATIC	RFTN1	ATR	3	3	16429514	142168413	Intron of RFTN1(-):10Kb before exon 5	Exon 47 of ATR(-)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: chr3:g.16429514_c.7793:ATRinv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	125738899	NA	0	7	10	8
P-0019407-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151845457	151860775	Exon 52 of KMT2C(-)	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.9887_c.13555del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15318	NA	0	32	10	33
P-0019410-T01-IM6	SOMATIC	DOT1L	CEACAM4	19	19	2214125	42147951	Intron of DOT1L(+):140bp after exon 18	IGR: 23Kb before CEACAM4(-)	GRCh37	DELETION	DOT1L (NM_032482 rearrangement:  c.1797+140:DOT1L_chr19:g.42147951del	PRECISE		MANUAL_OK	3to5	-	39933826	NA	0	6	10	4
P-0019412-T01-IM6	SOMATIC	IGF1R	SLC25A26	15	3	99434701	66300171	Exon 3 of IGF1R(+)	Intron of SLC25A26(+):6Kb after exon 2	GRCh37	TRANSLOCATION	IGF1R (NM_000875) - SLC25A26 (NM_173471) rearrangement: t(3;15)(p14.1;q26.3(chr3:g.66300171::chr15:g.99434701)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {IGF1R:SLC25A26}	0	NA	0	15	10	15
P-0019412-T01-IM6	SOMATIC	NF1	TMEM100	17	17	29664214	53698288	Intron of NF1(+):171bp before exon 43	IGR: 99Kb before TMEM100(-)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.6428-172:NF2_chr17:g.53698288inv	PRECISE		MANUAL_OK	5to5	-	24034074	NA	0	4	10	4
P-0019412-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15287683	15295211	Intron of NOTCH3(-):652bp after exon 24	Exon 16 of NOTCH3(-)	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.4403+653_c.2461inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7528	NA	0	5	10	8
P-0019420-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39966101	42872884	3-UTR of ERG(-):68Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 2-11):c.56-2768:TMPRSS2_c.-149-9232:ERGdel	PRECISE		MANUAL_OK	3to5	-	2906783	NA	0	96	10	102
P-0019427-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11826227	12028452	Intron of ETV6(+):23Kb after exon 1	Intron of ETV6(+):6Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.33+23133_c.1009+5549dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	202225	NA	0	6	10	6
P-0019432-T01-IM6	SOMATIC	RICTOR	FYB	5	5	38964812	39118073	Intron of RICTOR(-):81bp after exon 16	Intron of FYB(-):902bp after exon 16	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.1400+82:RICTOR_chr5:g.39118073inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	153261	NA	0	15	10	15
P-0019433-T01-IM6	SOMATIC	MADCAM1	TCF3	19	19	489738	1646398	IGR: 7Kb before MADCAM1(+)	Exon 2 of TCF3(-)	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: chr19:g.489738_c.101:TCF3inv	PRECISE		MANUAL_OK	3to3	-	1156660	NA	0	4	10	3
P-0019434-T01-IM6	SOMATIC	MST1	LRIG1	3	3	49723504	66565721	Exon 9 of MST1(-)	IGR: 137Kb before LRIG1(-)	GRCh37	INVERSION	MST1 (NM_020998) rearrangement: c.1138_chr3:g.66565721inv	PRECISE		MANUAL_OK	5to5	-	16842217	NA	0	3	10	8
P-0019436-T01-IM6	SOMATIC	STK11	STK11	19	19	1204970	1207034	Promoter of STK11(+):827bp from tx start	Exon 1 of STK11(+)	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.-1943_c.122inv	PRECISE		MANUAL_OK	5to5	-	2064	NA	0	21	10	25
P-0019442-T01-IM6	SOMATIC	TOP1	LINC00494	20	20	39751880	47040711	Exon 21 of TOP1(+)	IGR: 52Kb before LINC00494(+)	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: c.2241_chr20:g.47040711inv	PRECISE		MANUAL_OK	5to5	-	7288831	NA	0	9	10	16
P-0019442-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1913857	1955020	Intron of WHSC1(+):5Kb before exon 4	Intron of WHSC1(+):30bp before exon 12	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.761-4741_c.2138-31del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	41163	NA	0	24	10	25
P-0019445-T01-IM6	SOMATIC	ETV6	GRIN2B	12	12	12009253	14118931	Intron of ETV6(+):3Kb after exon 4	5-UTR of GRIN2B(-):403Kb before coding start	GRCh37	DELETION	ETV6 (NM_001987) - GRIN2B (NM_000834) rearrangement: c.463+2758:ETV6_c.-19+13931:GRIN2Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2109678	NA	0	51	10	54
P-0019456-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	112915310	112920547	Intron of PTPN11(+):144bp before exon 8	Intron of PTPN11(+):538bp after exon 10	GRCh37	DUPLICATION	PTPN11 (NM_002834)  rearrangement: c.854-145_c.1224+538dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	5237	NA	0	12	10	13
P-0019460-T01-IM6	SOMATIC	PPM1D	LOC100132174	17	17	58678120	75766061	Exon 1 of PPM1D(+)	IGR: 47Kb before LOC100132174(-)	GRCh37	INVERSION	PPM1D (NM_003620) rearrangement: c.345_chr17:g.75766061inv	PRECISE		MANUAL_OK	3to3	-	17087941	NA	0	8	10	8
P-0019460-T01-IM6	SOMATIC	OR7D2	NF1	19	17	9293069	29646941	IGR: 3Kb before OR7D2(+)	Intron of NF1(+):6Kb before exon 37	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;19)(q11.2;p13.2)(chr17:g.29646941::chr19:g.9293069)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0019470-T01-IM6	SOMATIC	JAK2	JAK2	9	9	4997782	5029833	5-UTR of JAK2(+):24Kb before coding start	Exon 4 of JAK2(+)	GRCh37	DELETION	JAK2 (NM_004972) Rearrangement : c.-26+11760_c.277del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	32051	NA	0	22	10	22
P-0019471-T01-IM6	SOMATIC	CEP85L	CSF3R	6	1	118964150	36939288	Intron of CEP85L(-):10Kb after exon 2	Intron of CSF3R(-):65bp before exon 6	GRCh37	TRANSLOCATION	CSF3R (NM_000760) Rearrangement : t(1;6)(p34.3;q22.31)(chr1:g.36939288::chr6:g.118964150)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	10	31
P-0019473-T01-IM6	SOMATIC	CD79A	MRPL36	19	5	42384823	1795958	Intron of CD79A(+):18bp after exon 4	Promoter of MRPL36(-):3Kb from tx start	GRCh37	TRANSLOCATION	CD79A (NM_001783) - MRPL36 (NM_032479) Rearrangement : t(5,19)(p15.33,q13.2)(chr5:g.1795958::chr19:g.42384823)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {CD79A:MRPL36}	0	NA	0	12	0	12
P-0019489-T01-IM6	SOMATIC	ELF3	CAPN2	1	1	201980552	223941868	Intron of ELF3(+):125bp after exon 2	Intron of CAPN2(+):1Kb after exon 9	GRCh37	DELETION	ELF3 (NM_004433) - CAPN2 (NM_001748) rearrangement: c.163+125:ELF3_c.1135+1210:CAPN2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ELF3:CAPN2}	21961316	NA	0	3	5	3
P-0019489-T01-IM6	SOMATIC	CCND1	NUMA1	11	11	69458798	71719423	Intron of CCND1(+):39bp after exon 3	Intron of NUMA1(-):310bp after exon 20	GRCh37	DELETION	CCND1 (NM_053056) rearrangement: c.574+39_g.71719423del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2260625	NA	0	5	10	5
P-0019491-T01-IM6	SOMATIC	ALK	EML4	2	2	29446596	42527895	Intron of ALK(-):202bp before exon 20	Intron of EML4(+):485bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 with ALK exons 20-29): c.1490-486:EML4_c.3173-202:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081299	NA	0	80	10	80
P-0019492-T01-IM6	SOMATIC	ERICH1-AS1	WHSC1L1	8	8	691711	38178592	5-UTR of ERICH1-AS1(+):396Kb before coding start	Exon 8 of WHSC1L1(-)	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: g.691711_c.1807del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	37486881	NA	0	11	10	11
P-0019497-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55128361	55222150	Intron of EGFR(+):41Kb after exon 1	Intron of EGFR(+):305bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.88+41303_c.889+305del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	93789	NA	0	96	10	98
P-0019510-T01-IM6	SOMATIC	CDK12	LINC00901	17	3	37682296	116889700	Exon 13 of CDK12(+)	IGR: 249Kb before LINC00901(+)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(3;17)(q13.31;q12)(chr3:g.116889700::chr17:g.37682296)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	9	0	46
P-0019512-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71937594	71940220	Intron of INPPL1(+):1Kb after exon 1	Exon 5 of INPPL1(+)	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.182+1384_c.605del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2626	NA	0	6	10	6
P-0019513-T01-IM6	SOMATIC	ALK	EML4	2	2	29448403	42524934	Exon 19 of ALK(-)	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 19-29): c.1489+2278:EML4_c.3096:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13076531	NA	0	134	10	130
P-0019519-T01-IM6	SOMATIC	MET	MET	7	7	116411860	116414350	Intron of MET(+):42bp before exon 14	Intron of MET(+):584bp before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2888-43_c.3029-585del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2490	NA	0	23	10	24
P-0019528-T01-IM6	SOMATIC	MED12	MIR3147	X	7	70357796	57366619	Intron of MED12(+):3bp after exon 41	IGR: 106Kb before MIR3147(+)	GRCh37	TRANSLOCATION	MED12 (NM_005120) rearrangement: t(7;X)(p11.2;q13.1)(chr7:g.57366619::chrX:g.70357796)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	18
P-0019529-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115267017	115268141	Intron of CSDE1(-):394bp before exon 17	Intron of CSDE1(-):187bp before exon 16	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.1779-187_c.1892-394inv	PRECISE		MANUAL_OK	3to3	-	1124	NA	0	17	10	11
P-0019529-T01-IM6	SOMATIC	EIF3H	RAD21	8	8	117708909	117869482	Intron of EIF3H(-):29Kb after exon 2	Intron of RAD21(-):23bp after exon 6	GRCh37	DELETION	RAD21 (NM_006265) - EIF3H (NM_003756) rearrangement: c.688+24:RAD21_c.289+29346:EIF3Hdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RAD21:EIF3H}	160573	NA	0	9	10	9
P-0019533-T01-IM6	SOMATIC	ALK	EML4	2	2	29446494	42498708	Intron of ALK(-):100bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 with ALK exons 20-29): c.667+6837:EML4_c.3173-100:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052214	NA	0	19	10	21
P-0019535-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314077	43611913	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):118bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1726-2113:KIF5B_c.2137-119:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297836	NA	0	79	10	127
P-0019541-T01-IM6	SOMATIC	ALK	MYO3B	2	2	29447793	171124800	Intron of ALK(-):533bp after exon 19	Intron of MYO3B(+):32Kb after exon 7	GRCh37	DELETION	ALK (NM_004304) - MYO3B (NM_138995) rearrangement: c.3172+534:ALK_c.749+32154:MYO3Bdel	PRECISE		MANUAL_OK	3to5	-	141677007	NA	0	20	10	21
P-0019552-T01-IM6	SOMATIC	C1orf127	MTOR	1	1	10998818	11182082	IGR: 8Kb before C1orf127(-)	Exon 48 of MTOR(-)	GRCh37	DUPLICATION	MTOR (NM_004958) Rearrangement : chr1:g.10998818_c.6764:MTOR	PRECISE		MANUAL_OK	5to3	-	183264	NA	0	7	10	7
P-0019563-T01-IM6	SOMATIC	NUDT11	KDM5C	X	X	51236167	53224190	Intron of NUDT11(-):2Kb before exon 2	Exon 22 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) - NUDT11 (NM_018159) rearrangement: c.3361:KDM5C_c.495-1566:NUDT11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KDM5C:NUDT11}	1988023	NA	0	9	10	9
P-0019564-T01-IM6	SOMATIC	GNB3	CDK4	12	12	6950073	58145430	5-UTR of GNB3(+):378bp before coding start	Exon 2 of CDK4(-)	GRCh37	INVERSION	CDK4 (NM_000075) - GNB3 (NM_002075) rearrangement : c.71:CDK4_c.-155:GNB3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CDK4:GNB3}	51195357	NA	0	2	6	2
P-0019564-T01-IM6	SOMATIC	MDM2	PTPRR	12	12	69233143	71085394	Exon 11 of MDM2(+)	Intron of PTPRR(-):7Kb after exon 8	GRCh37	DELETION	MDM2 (NM_002392) rearrangement: c.1008_g.71085394del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1852251	NA	0	12	10	12
P-0019570-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151788651	151859378	5-UTR of GALNT11(+):3Kb before coding start	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: g.151788651_c.11284del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	70727	NA	0	54	10	74
P-0019580-T01-IM6	SOMATIC	FXR2	TP53	17	17	7504541	7580673	Intron of FXR2(-):185bp after exon 7	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) - FXR2 (NM_004860) rearrangement: c.-28-733:TP53_c.660+186:FXR2del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TP53:FXR2}	76132	NA	0	4	10	4
P-0019581-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25458694	25459805	Exon 22 of DNMT3A(-)	Exon 21 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c2478_c.2479del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1111	NA	0	2	7	2
P-0019584-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49444999	49446466	Exon 10 of KMT2D(-)	Exon 9 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.1139_c.2467del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1467	NA	0	40	10	40
P-0019584-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143044639	143050132	Intron of INPP4B(-):71bp before exon 20	Intron of INPP4B(-):4Kb before exon 19	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.1721-4219_c.1894-71del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5493	NA	0	41	10	43
P-0019586-T01-IM6	SOMATIC	ACBD6	PARP1	1	1	180353582	226550807	Intron of ACBD6(-):13Kb after exon 6	Exon 21 of PARP1(-)	GRCh37	DELETION	PARP1 (NM_001618) - ACBD6 (NM_032360) rearrangement: c.2841:PARP1_c.663+13069:ACBD6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PARP1:ACBD6}	46197225	NA	0	2	10	3
P-0019586-T01-IM6	SOMATIC	PKP1	MDM4	1	1	201250257	204500006	Promoter of PKP1(+):2Kb from tx start	Intron of MDM4(+):61bp after exon 4	GRCh37	DUPLICATION	MDM4 (NM_002393) rearrangement: chr1:g.201250257_c.287+61dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {MDM4:PKP1}	3249749	NA	0	4	10	3
P-0019596-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55109192	55222782	Intron of EGFR(+):22Kb after exon 1	Intron of EGFR(+):740bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.88+22134_c.890-741del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	113590	NA	0	2	10	283
P-0019600-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35872842	35876797	Intron of NFKBIA(-):53bp after exon 2	Promoter of NFKBIA(-):6Kb from tx start	GRCh37	INVERSION	NFKBIA (NM_020529) Rearrangement : c.-2947_ c.336+54inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3955	NA	0	29	10	32
P-0019603-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55144799	55222259	Intron of EGFR(+):58Kb after exon 1	Intron of EGFR(+):414bp after exon 7	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.88+57741_c.889+414del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	77460	NA	0	10	10	2577
P-0019603-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268171	55869645	Intron of EGFR(+):65bp after exon 24	Intron of SEPT14(-):3Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) Fusion ((EGFR exons 1-24 fused with SEPT14 exon 10) :  c.2946+65:EGFR_c.1119+3306:SEPT14	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	601474	NA	0	13	10	13
P-0019604-T01-IM6	SOMATIC	CCND2	ETV6	12	12	4383155	12026486	5-UTR of CCND2(+):51bp before coding start	Intron of ETV6(+):4Kb after exon 5	GRCh37	INVERSION	CCND2 (NM_001759) - ETV6 (NM_001987) Rearrangement : c.-52:CCND2_c.1009+3583:ETV6inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7643331	NA	0	60	10	58
P-0019604-T01-IM6	SOMATIC	MYH14	POLD1	19	19	50785160	50909319	Intron of MYH14(+):61bp after exon 31	Intron of POLD1(+):119bp before exon 11	GRCh37	DELETION	MYH14 (NM_001145809) - POLD1 (NM_002691) Rearrangement : c.4539+61:MYH14_c.1243-120:POLD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MYH14:POLD1}	124159	NA	0	6	10	6
P-0019604-T01-IM6	SOMATIC	APC	APC	5	5	112175982	112182025	Exon 16 of APC(+)	Promoter of APC(+):108Kb from tx start	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.4691_c.*2202del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6043	NA	0	34	10	35
P-0019611-T02-IM6	SOMATIC	CBL	CBL	11	11	119148604	119151521	Intron of CBL(+):50bp after exon 7	Intron of CBL(+):2Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+50_c.1431+2098del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2917	NA	0	35	10	38
P-0019614-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114707991	114711140	Promoter of TCF7L2(+):2Kb from tx start	Intron of TCF7L2(+):101bp before exon 3	GRCh37	DELETION	TCF7L2 (NM_001146274) Rearrangement : c.-2525_c.257-102del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3149	NA	0	22	10	22
P-0019637-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63554195	63555053	Exon 2 of AXIN2(-)	5-UTR of AXIN2(-):29Kb before coding start	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.544_c.-116-199del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	858	NA	0	63	10	66
P-0019642-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55089217	55223185	Intron of EGFR(+):2Kb after exon 1	Intron of EGFR(+):337bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+2159_c.890-338del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	133968	NA	0	28	0	234
P-0019653-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162206924	162211098	Exon 7 of PARK2(-)	Intron of PARK2(-):4Kb before exon 7	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.735-4158_c.751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4174	NA	0	25	10	25
P-0019654-T01-IM6	SOMATIC	CREBBP	ZNRF1	16	16	3786048	75025150	Exon 28 of CREBBP(-)	IGR: 8Kb before ZNRF1(+)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: chr16:g.75025150_c.4717inv	PRECISE		MANUAL_OK	5to5	-	71239102	NA	0	52	10	75
P-0019654-T01-IM6	SOMATIC	NOTCH1	SNHG7	9	9	139396858	139622044	Exon 28 of NOTCH1(-)	3-UTR of SNHG7(-):592bp after coding stop	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: chr9:g.139622044_c.5250dup	PRECISE		MANUAL_OK	5to3	-	225186	NA	0	11	10	11
P-0019659-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38274415	38275852	Intron of FGFR1(-):408bp after exon 13	Exon 11 of FGFR1(-)	GRCh37	DELETION	FGFR1 (NM_001174067) Rearrangement : c.1417_c.1756+409del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1437	NA	0	23	10	25
P-0019662-T01-IM6	SOMATIC	TTC28	CHEK2	22	22	29037187	29090984	Intron of TTC28(-):11Kb before exon 2	Intron of CHEK2(-):130bp after exon 12	GRCh37	DELETION	CHEK2 (NM_007194) - TTC28 (NM_001145418) Rearrangement : c.1375+131:CHEK2_c.103-11369:TTC28del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CHEK2:TTC28}	53797	NA	0	5	10	7
P-0019663-T01-IM6	SOMATIC	ATXN2	RET	12	10	111918446	43608640	Intron of ATXN2(-):5Kb after exon 18	Intron of RET(+):229bp after exon 9	GRCh37	TRANSLOCATION	RET (NM_020975) - ATXN2 (NM_002973) Rearrangement : t(10;12)(q11.21;q24.13)(chr10:g.43608640:chr12:g.111918446)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	42	10	42
P-0019663-T01-IM6	SOMATIC	LIN52	RET	14	10	74562750	43608613	Intron of LIN52(+):62bp after exon 3	Intron of RET(+):202bp after exon 9	GRCh37	TRANSLOCATION	RET (NM_020975) - LIN52 (NM_001024674) Rearrangement : t(10;14)(p32.1;q12)(chr10:g.43608613:chr14:g.74562750)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RET:LIN52}	0	NA	0	11	10	14
P-0019670-T02-IM6	SOMATIC	ROS1	TFG	6	3	117643761	100448554	Intron of ROS1(-):1Kb before exon 35	Intron of TFG(+):852bp after exon 4	GRCh37	TRANSLOCATION	TFG (NM_001195478) - ROS1 (NM_002944) fusion (TFG exon 4 fused to ROS1 exon 35): t(3;6)(q12.2;q22.1)(chr3:g.100448554::chr6:g.117643761)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TFG:ROS1}	0	NA	0	8	10	8
P-0019675-T01-IM6	SOMATIC	TERT	MAST4	5	5	1295269	66390727	Promoter of TERT(-):42Kb from tx start	Intron of MAST4(+):697bp before exon 7	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-165:TERT_chr5:g.66390727inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MAST4:TERT}	65095458	NA	0	7	10	7
P-0019676-T01-IM6	SOMATIC	FSTL4	FLT4	5	5	132654179	180056377	Intron of FSTL4(-):2Kb before exon 5	Exon 7 of FLT4(-)	GRCh37	DUPLICATION	FSTL4 (NM_015082) - FLT4 (NM_182925) rearrangement: c.410-1835:FSTL4_c.867:FLT4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FSTL4:FLT4}	47402198	NA	0	3	10	3
P-0019680-T01-IM6	SOMATIC	SPANXN4	SMYD3	X	1	141735629	246518356	IGR: 378Kb before SPANXN4(+)	Exon 2 of SMYD3(-)	GRCh37	TRANSLOCATION	SMYD3 (NM_001167740) rearrangement: t(X;1)(q27.2;q44)(chrX:g.141735629::chr1:g.246518356)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	17	10	18
P-0019688-T01-IM6	SOMATIC	KMT2C	TP53BP2	7	1	151874654	224044077	Exon 38 of KMT2C(-)	IGR: 76Kb before TP53BP2(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(1;7)(q41;q36.1)(chr1:g.224044077::chr7:g.151874654)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0019692-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877975	42878273	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.55+1604:TMPRSS2_c.40-60431:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000298	NA	0	50	10	52
P-0019695-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878574	42871057	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):941bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-941:TMPRSS2_c.40-61030:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992483	NA	0	2	5	2
P-0019719-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52668589	52669917	Intron of PBRM1(-):28bp after exon 12	Intron of PBRM1(-):1Kb before exon 12	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.1088-1086_c.1301+29dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1328	NA	0	30	10	30
P-0019720-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157518248	157522494	Intron of ARID1B(+):799bp after exon 16	Exon 18 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.4013+799_c.4766del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4246	NA	0	80	10	89
P-0019722-T01-IM6	SOMATIC	NOTCH3	ARID5B	19	10	15297729	63685643	Exon 12 of NOTCH3(-)	Intron of ARID5B(+):14Kb before exon 3	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) - ARID5B (NM_032199) rearrangement: t(10;19)(q21.2;p13.12)(chr10:g.63685643::chr19:g.15297729)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	8	5
P-0019723-T01-IM6	SOMATIC	CTNNA3	FGFR2	10	10	67888989	123243018	Intron of CTNNA3(-):26Kb before exon 14	Intron of FGFR2(-):193bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - CTNNA3 (NM_013266) rearrangement: c.2301+194:FGFR2_c.1885-25982:CTNNA3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:CTNNA3}	55354029	NA	0	12	10	16
P-0019723-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55124918	55126688	5-UTR of PDGFRA(+):17bp before coding start	Intron of PDGFRA(+):573bp before exon 3	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.-12-6_c.50-574del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1770	NA	0	4	10	4
P-0019727-T01-IM6	SOMATIC	TCF3	PNPLA6	19	19	1627426	7615432	Intron of TCF3(-):1bp before exon 5	Exon 19 of PNPLA6(+)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.299-1_g.7615432del	PRECISE		MANUAL_OK	3to5	-	5988006	NA	0	93	10	105
P-0019730-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739080	1808758	Intron of TACC3(+):25bp after exon 9	Intron of FGFR3(+):84bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused in-frame with TACC3 exons 10-16):c.2275-85:FGFR3_c.1836+25:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69678	NA	0	28	10	29
P-0019731-T01-IM6	SOMATIC	ARID1A	PHGDH	1	1	27105726	120250048	Exon 20 of ARID1A(+)	IGR: 4Kb before PHGDH(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement : c.5337:ARID1A_g.120250048inv	PRECISE		MANUAL_OK	3to3	-	93144322	NA	0	13	10	17
P-0019733-T01-IM6	SOMATIC	SLC9A3	TERT	5	5	473848	1295427	Intron of SLC9A3(-):351bp before exon 17	Promoter of TERT(-):42Kb from tx start	GRCh37	INVERSION	TERT (NM_198253) rearrangement : g.473848_c.-323:TERTinv	PRECISE		MANUAL_OK	3to3	-	821579	NA	0	27	10	27
P-0019734-T01-IM6	SOMATIC	STK11	STK11	19	19	1216979	1219125	Intron of STK11(+):1Kb before exon 2	Intron of STK11(+):197bp before exon 3	GRCh37	INVERSION	STK11 (NM_000455) rearrangement : c.291-1437_c.375-198inv	PRECISE		MANUAL_OK	5to5	-	2146	NA	0	5	10	5
P-0019748-T01-IM6	SOMATIC	GSK3A	CIC	19	19	42744710	42794451	Intron of GSK3A(-):416bp before exon 2	Exon 10 of CIC(+)	GRCh37	DUPLICATION	GSK3A (NM_019884) - CIC (NM_015125) rearrangement: c.284-416:GSK3A_c.1531:CICdup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	49741	NA	0	113	10	125
P-0019750-T01-IM6	SOMATIC	MAP3K1	MAST4	5	5	56184218	66189890	Intron of MAP3K1(+):34bp after exon 19	Intron of MAST4(+):6Kb before exon 4	GRCh37	DELETION	MAP3K1 (NM_005921) - MAST4 (NM_001164664)  rearrangement: c.4389+34:MAP3K1_c.643-5889:MAST4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MAP3K1:MAST4}	10005672	NA	0	38	10	40
P-0019756-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683784	128678982	Intron of EWSR1(+):661bp after exon 8	Intron of FLI1(+):69bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 8-9) : t(11;22)(q24.3;q12.2)(chr11:g.128678982::chr22:g.29683784)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	93	10	105
P-0019761-T01-IM6	SOMATIC	ZZZ3	FUBP1	1	1	78133823	78433745	5-UTR of ZZZ3(-):102Kb before coding start	Intron of FUBP1(-):103bp after exon 3	GRCh37	DELETION	FUBP1 (NM_003902) - ZZZ3 (NM_015534) rearrangement: c.250+104:FUBP1_c.-403+14447:ZZZ3del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FUBP1:ZZZ3}	299922	NA	0	4	6	4
P-0019771-T01-IM6	SOMATIC	BLM	BLM	15	15	91307883	91312634	Intron of BLM(+):642bp before exon 9	Intron of BLM(+):33bp before exon 12	GRCh37	DELETION	BLM (NM_000057) rearrangement: c.2075-643_c.2407-34del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4751	NA	0	11	10	12
P-0019772-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31379471	31381477	Exon 8 of DNMT3B(+)	Intron of DNMT3B(+):76bp after exon 10	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.878_c.1126+76del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2006	NA	0	14	10	14
P-0019776-T01-IM6	SOMATIC	USP6	CDK12	17	17	5065709	37673592	Intron of USP6(+):469bp before exon 25	Intron of CDK12(+):100bp before exon 10	GRCh37	DELETION	USP6 (NM_004505) - CDK12 (NM_016507) rearrangement: c.2916-470:USP6_c.2847-101:CDK12del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {USP6:CDK12}	32607883	NA	0	29	10	33
P-0019776-T01-IM6	SOMATIC	INSR	INSR	19	19	7100343	7168124	IGR: 12Kb before INSR(-)	Intron of INSR(-):19bp before exon 7	GRCh37	DUPLICATION	INSR (NM_000208) rearrangement: c.1484-19_chr19:g.7100343dup	PRECISE		MANUAL_OK	5to3	-	67781	NA	0	4	10	7
P-0019776-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	11031264	11096611	Intron of CARM1(+):15bp after exon 11	Intron of SMARCA4(+):253bp before exon 4	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - CARM1 (NM_199141) rearrangement: c.356-254:SMARCA4_c.1334+15:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SMARCA4:CARM1}	65347	NA	0	9	10	9
P-0019776-T01-IM6	SOMATIC	C20orf203	DNMT3B	20	20	31232283	31375154	3-UTR of C20orf203(-):6Kb after coding stop	Exon 6 of DNMT3B(+)	GRCh37	DUPLICATION	C20orf203 (NM_182584) - DNMT3B (NM_006892) rearrangement: c.*1178-3794:C20orf203_c.551:DNMT3Bdup	PRECISE		MANUAL_OK	5to3	-	142871	NA	0	21	10	21
P-0019777-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180046393	180055549	Intron of FLT4(-):27bp before exon 19	Intron of FLT4(-):332bp after exon 8	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.1103+333_c.2648-27inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	9156	NA	0	8	0	9
P-0019786-T01-IM6	SOMATIC	ALK	EML4	2	2	29447575	42543272	Intron of ALK(-):751bp after exon 19	Intron of EML4(+):82bp after exon 17	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 fused in-frame with ALK exons 20-29): c.2056+82:EML4_c.3172+752:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13095697	NA	0	136	10	132
P-0019792-T01-IM6	SOMATIC	HNRNPA3	MDM4	2	1	178015265	204518563	IGR: 62Kb before HNRNPA3(+)	Exon 11 of MDM4(+)	GRCh37	TRANSLOCATION	MDM4 (NM_002393) rearrangement: t(1;2)(q32.1;q31.2)(chr1:g.204518563::chr2:g.178015265)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	18
P-0019797-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39842251	42872215	Intron of ERG(-):25Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-2099:TMPRSS2_c.19-24707:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3029964	NA	0	52	10	81
P-0019802-T01-IM6	SOMATIC	RET	TMEM65	10	8	43610696	125313999	Intron of RET(+):512bp after exon 11	IGR: 9Kb before TMEM65(-)	GRCh37	TRANSLOCATION	RET (NM_020975) Rearrangement : t(8;10)(q24.13;q11.21)(chr8:g.125313999::chr10:g.43610696)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	20
P-0019836-T01-IM6	SOMATIC	ETV6	ANKS1B	12	12	12006878	99689291	Intron of ETV6(+):383bp after exon 4	Intron of ANKS1B(-):49Kb before exon 13	GRCh37	INVERSION	ETV6 (NM_001987) - ANKS1B (NM_152788) Rearrangement : c.463+383:ETV6_c.1757-48649:ANKS1Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:ANKS1B}	87682413	NA	0	5	10	4
P-0019838-T01-IM6	SOMATIC	LOC102724957	RPS6KB2	11	11	15580117	67196022	IGR: 85Kb before LOC102724957(+)	Exon 1 of RPS6KB2(+)	GRCh37	DELETION	RPS6KB2 (NM_003952) Rearrangement :  chr11:g.15580117_c.6del	PRECISE		MANUAL_OK	3to5	-	51615905	NA	0	38	10	37
P-0019840-T01-IM6	SOMATIC	ETV6	EPHA3	12	3	12008769	88996930	Intron of ETV6(+):2Kb after exon 4	IGR: 160Kb before EPHA3(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) Rearrangement: t(3;12)(p11.1;p13.2)(chr3:g.88996930::chr12:g.12008769)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	87	10	87
P-0019840-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858985	42874233	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 with ERG exons 2-10) : c.56-4117:TMPRSS2_c.18+11302:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015248	NA	0	46	10	52
P-0019842-T01-IM6	SOMATIC	DAOA-AS1	IRS2	13	13	106047899	110434988	IGR: 64Kb before DAOA-AS1(-)	Exon 1 of IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) Rearrangement : c.3413:IRS2_chr13:g.106047899del	PRECISE		MANUAL_OK	3to5	-	4387089	NA	0	5	10	5
P-0019847-T01-IM6	SOMATIC	LINC01099	PDCD1	4	2	179543642	242794957	IGR: 719Kb before LINC01099(-)	Exon 2 of PDCD1(-)	GRCh37	TRANSLOCATION	PDCD1 (NM_005018) rearrangement: t(2;4)(q37.3;q34.3)(chr2:g.242794957_chr4:g.179543642)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	31
P-0019855-T01-IM6	SOMATIC	RPS6KB2	CORO1B	11	11	67200242	67209551	Exon 7 of RPS6KB2(+)	Exon 3 of CORO1B(-)	GRCh37	DUPLICATION	RPS6KB2 (NM_003952)  - CORO1B (NM_020441) rearrangement: c.550:RPS6KB2_c.210:CORO1Bdup	PRECISE		MANUAL_OK	5to3	-	9309	NA	0	66	10	76
P-0019855-T01-IM6	SOMATIC	BRCA1	ANKFN1	17	17	41222945	54465978	Exon 15 of BRCA1(-)	Intron of ANKFN1(+):14Kb after exon 7	GRCh37	DUPLICATION	BRCA1 (NM_007294) - ANKFN1 (NM_153228) rearrangement: c.4986:BRCA2_c.919+13903:ANKFN1dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	13243033	NA	0	89	10	99
P-0019855-T01-IM6	SOMATIC	HIST1H3C	HIST1H1C	6	6	26049856	26056163	IGR: 4Kb before HIST1H3C(+)	Exon 1 of HIST1H1C(-)	GRCh37	DUPLICATION	HIST1H3C (NM_003531) rearrangement:  c.494_chr6:g.26049856dup	PRECISE		MANUAL_OK	5to3	-	6307	NA	0	45	10	53
P-0019855-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151880598	151945617	Intron of KMT2C(-):357bp before exon 35	Exon 14 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.1902_c.5083-357del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	65019	NA	0	78	10	89
P-0019862-T01-IM6	SOMATIC	RTEL1	ZGPAT	20	20	62294014	62357285	Intron of RTEL1(+):34bp after exon 5	Intron of ZGPAT(+):7Kb before exon 3	GRCh37	DELETION	RTEL1 (NM_032957) - ZGPAT (NM_032527) rearrangement: c.549+34_c.585-7286del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RTEL1:ZGPAT}	63271	NA	0	3	10	3
P-0019868-T01-IM6	SOMATIC	RB1	RB1	13	13	48921986	48924080	Exon 5 of RB1(+)	Intron of RB1(+):921bp after exon 6	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.526_c.607+921del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2094	NA	0	23	10	26
P-0019880-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48531265	48573453	IGR: 25Kb before SMAD4(+)	Exon 2 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: chr18:g.48531265_c.37:SMAD4del	PRECISE		MANUAL_OK	3to5	-	42188	NA	0	8	10	10
P-0019883-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12021197	12023983	Intron of ETV6(+):1Kb before exon 5	Intron of ETV6(+):1Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.464-1161_c.1009+1080dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	2786	NA	0	7	10	6
P-0019918-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864160	42873623	Intron of TMPRSS2(-):2Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-3507_c.349+2123del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	9463	NA	0	12	10	12
P-0019922-T01-IM6	SOMATIC	GLI1	LGR5	12	12	57865299	71730061	Exon 12 of GLI1(+)	IGR: 103Kb before LGR5(+)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.2776:GLI1_chr12:g.71730061inv	PRECISE		MANUAL_OK	5to5	-	13864762	NA	0	127	10	188
P-0019922-T01-IM6	SOMATIC	YIF1B	EGFR	19	7	38806683	55238939	Promoter of YIF1B(-):12Kb from tx start	Intron of EGFR(+):33bp after exon 16	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;19)(p22.1;q13.2)(chr7:g.5523893::chr19:g.38806683)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	429	10	578
P-0019924-T01-IM6	SOMATIC	ERBB2	PITHD1	17	1	37871691	24108131	Intron of ERBB2(+):7bp before exon 11	Intron of PITHD1(+):2Kb after exon 3	GRCh37	TRANSLOCATION	PITHD1 (NM_020362) - ERBB2 (NM_004448) rearrangement: t(1;17)(p36.11;q12)(chr1:g.24108131::chr17:g.37871691)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PITHD1:ERBB2}	0	NA	0	14	10	14
P-0019930-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37618902	37621987	Exon 1 of CDK12(+)	Intron of CDK12(+):3Kb after exon 1	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.578_c.1046+2617del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3085	NA	0	55	10	59
P-0019930-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876869	42870942	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):826bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-826:TMPRSS2_c.40-59325:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994073	NA	0	93	10	99
P-0019933-T01-IM6	SOMATIC	RUNX1	LOC646522	21	11	36259357	133681309	Exon 4 of RUNX1(-)	Promoter of LOC646522(-):28Kb from tx start	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(11;21)(q25;q22.12)(chr11:g.133681309::chr21:g.36259357)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RUNX1:LOC646522}	0	NA	0	41	10	42
P-0019933-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39887565	42874808	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion ( TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-4692:TMPRSS2_c.39+60021:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987243	NA	0	35	10	36
P-0019936-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52437478	52454975	Exon 13 of BAP1(-)	Exon 7 of PHF7(+)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1683:BAP1_chr3:g.52454975del	PRECISE		MANUAL_OK	3to5	-	17497	NA	0	6	10	6
P-0019937-T01-IM6	SOMATIC	BRCA2	NBEA	13	13	32911293	35518543	Exon 11 of BRCA2(+)	Intron of NBEA(+):1Kb after exon 1	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.2801:BRCA2_chr13:g.35518543inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2607250	NA	0	76	10	74
P-0019957-T01-IM6	SOMATIC	MAP2K4	LINC00670	17	17	12043212	12465067	Intron of MAP2K4(+):11bp after exon 10	5-UTR of LINC00670(+):75Kb before coding start	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.1086+11_chr17:g.12465067del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MAP2K4:LINC00670}	421855	NA	0	17	10	61
P-0019958-T01-IM6	SOMATIC	CDH1	CHTF8	16	16	68772356	69159056	Intron of CDH1(+):42bp after exon 2	3-UTR of CHTF8(-):7Kb after coding stop	GRCh37	DELETION	CDH1 (NM_004360) - CHTF8 (NM_001040146) rearrangement: c.163+42:CDH1_c.-35-3660:CHTF8del	PRECISE		MANUAL_OK	3to5	-	386700	NA	0	18	10	18
P-0019963-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8521606	8524880	Intron of PTPRD(-):60bp before exon 20	Intron of PTPRD(-):44bp after exon 18	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.679+45_c.692-60del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	3274	NA	0	11	10	11
P-0019963-T01-IM6	SOMATIC	AMMECR1	PTPRD	X	9	109539659	8521378	Intron of AMMECR1(-):21Kb after exon 1	Exon 20 of PTPRD(-)	GRCh37	TRANSLOCATION	PTPRD (NM_002839)  - AMMECR1 (NM_015365) rearrangement: t(9;X)(p24.1;q23)(chr9:g.8521378::chrX:g.109539659)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PTPRD:AMMECR1}	0	NA	0	8	10	8
P-0019966-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098782	178114274	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):15Kb after exon 1	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement:  c.45+14986_c.263del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15492	NA	0	20	10	21
P-0019967-T01-IM6	SOMATIC	AKT1	MCUR1	14	6	105242060	13754782	Exon 5 of AKT1(-)	IGR: 32Kb before MCUR1(-)	GRCh37	TRANSLOCATION	AKT1 (NM_001014431) rearrangement: t(6;14)(p23;q32.33)(chr6:g.13754782::chr14:g.105242060)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	8
P-0019967-T01-IM6	SOMATIC	TRAPPC9	AGO2	8	8	140948477	141542713	Intron of TRAPPC9(-):26Kb before exon 20	Exon 18 of AGO2(-)	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.3105-25933:TRAPPC9_c.2273:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAPPC9:AGO2}	594236	NA	0	5	10	5
P-0019972-T01-IM6	SOMATIC	ALK	EML4	2	2	29448101	42493050	Intron of ALK(-):225bp after exon 19	Intron of EML4(+):1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304)  Fusion (EML4 exons 1-5 fused to ALK exon 20-29) : c.493+1179:EML4_c.3172+226:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13044949	NA	0	120	10	119
P-0019976-T01-IM6	SOMATIC	LINC01281	MED12	X	X	39187963	70341132	Promoter of LINC01281(-):24Kb from tx start	Intron of MED12(+):44bp before exon 6	GRCh37	DUPLICATION	MED12 (NM_005120) Rearrangement : c.736-45:MED12_chrX:g.39187963dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	31153169	NA	0	8	10	8
P-0019977-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3832790	3867864	Exon 6 of CREBBP(-)	Intron of CREBBP(-):7Kb before exon 3	GRCh37	DELETION	CREBBP (NM_004380) Rearrangement : c.799-7084_c.1468del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	35074	NA	0	7	8	6
P-0019978-T01-IM6	SOMATIC	RIT1	NOS1AP	1	1	155880420	162106434	Intron of RIT1(-):26bp after exon 2	Intron of NOS1AP(+):18Kb before exon 2	GRCh37	INVERSION	RIT1 (NM_006912) -  NOS1AP (NM_014697) Rearrangement: c.106+27:RIT1_c.106-17761:NOS1APinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RIT1:NOS1AP}	6226014	NA	0	22	10	24
P-0019991-T01-IM6	SOMATIC	HCN1	PAX8	5	2	46376227	113978655	IGR: 1Mb before HCN1(-)	Intron of PAX8(-):900bp before exon 11	GRCh37	TRANSLOCATION	PAX8 (NM_003466) Rearrangement :  t(2;5)(q14.1;p11)(chr2:g.113978655::chr5:g.46376227)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	29
P-0020007-T01-IM6	SOMATIC	NF1	ATP6V1H	17	8	29588857	54716159	Exon 35 of NF1(+)	Intron of ATP6V1H(-):2Kb before exon 8	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - ATP6V1H (NM_015941) rearrangement: t(8;17)(q11.23;q11.2)(chr8:g.54716159::chr17:g.29588857)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0020007-T01-IM6	SOMATIC	RHOA	DAG1	3	3	49405785	49493880	Intron of RHOA(-):75bp after exon 3	IGR: 12Kb before DAG1(+)	GRCh37	DUPLICATION	RHOA (NM_001664) rearrangement: c.277+76_chr3:g.49493880dup	PRECISE		MANUAL_OK	5to3	-	88095	NA	0	34	10	34
P-0020010-T01-IM6	SOMATIC	CDKN2B	ELAVL2	9	9	22008729	23724793	Intron of CDKN2B(-):67bp after exon 1	Intron of ELAVL2(-):6Kb after exon 3	GRCh37	INVERSION	CDKN2B (NM_004936) - ELAVL2 (NM_004432)  rearrangement: c.156+68:CDKN2B_c.333+6227:ELAVL2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1716064	NA	0	23	10	30
P-0020013-T01-IM6	SOMATIC	TMPRSS2	SEPT11	21	4	42872227	77953453	Intron of TMPRSS2(-):2Kb before exon 2	Intron of SEPT11(+):1Kb after exon 9	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - SEPT11 (NM_018243) rearrangement: t(4;21)(q21.1;q22.3)(chr4:g.77953453::chr21:g.42872227)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TMPRSS2:SEPT11}	0	NA	0	6	10	10
P-0020025-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60457061	123241984	Intron of BICC1(+):5Kb before exon 3	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 with BICC1 exons 3-21) : c.2301+1228:FGFR2_c.238-4773:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62784923	NA	0	50	10	55
P-0020033-T01-IM6	SOMATIC	KMT2B	SEC1P	19	19	36211597	49186141	Exon 3 of KMT2B(+)	Promoter of SEC1P(+):45Kb from tx start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement : c.134:KMT2B_g.49186141inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	12974544	NA	0	11	0	13
P-0020038-T01-IM6	SOMATIC	JAK1	MIR101-1	1	1	65332979	65567911	Intron of JAK1(-):88bp before exon 7	IGR: 44Kb before MIR101-1(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.648-88_chr1:g.65567911del	PRECISE		MANUAL_OK	3to5	-	234932	NA	0	9	9	9
P-0020046-T01-IM6	SOMATIC	CDK12	DLX4	17	17	37619467	48042731	Intron of CDK12(+):97bp after exon 1	IGR: 4Kb before DLX4(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.1046+97_chr17:g.48042731del	PRECISE		MANUAL_OK	3to5	-	10423264	NA	0	5	10	5
P-0020047-T01-IM6	SOMATIC	ZFHX3	RASL12	16	15	72992701	65351569	Exon 2 of ZFHX3(-)	Intron of RASL12(-):113bp after exon 3	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) - RASL12 (NM_016563) rearrangement: t(15;16)(q22.31;q22.3)(chr15:g.65351569::chr16:g.72992701)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	10	10	12
P-0020058-T01-IM6	SOMATIC	CBFB	C16orf70	16	16	67070728	67139204	Intron of CBFB(+):70bp after exon 3	IGR: 5Kb before C16orf70(+)	GRCh37	DELETION	CBFB (NM_022845) rearrangement: c.282+70:CBFB_chr16:g.67139204del	PRECISE		MANUAL_OK	3to5	-	68476	NA	0	8	10	12
P-0020078-T01-IM6	SOMATIC	RET	RET	10	10	43608871	43610429	Intron of RET(+):132bp before exon 10	Intron of RET(+):245bp after exon 11	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.1760-133_c.2136+245inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1558	NA	0	4	10	4
P-0020078-T01-IM6	SOMATIC	LOC338797	POLE	12	12	131945557	133253906	IGR: 114Kb before LOC338797(+)	Intron of POLE(-):42bp after exon 8	GRCh37	DELETION	POLE (NM_006231) rearrangement: chr12:g.131945557_c.801+43del	PRECISE		MANUAL_OK	3to5	-	1308349	NA	0	75	10	78
P-0020078-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39814317	42872724	Intron of ERG(-):3Kb after exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-2608:TMPRSS2_c.236+3010:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3058407	NA	0	52	10	57
P-0020080-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8112508	8115833	Intron of GATA3(+):947bp after exon 5	Exon 6 of GATA3(+)	GRCh37	DELETION	GATA3 (NM_002051) rearrangement: c.1047+947_c.1179del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3325	NA	0	34	10	33
P-0020083-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862196	42873200	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-3084:TMPRSS2_c.18+8091:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011004	NA	0	28	10	31
P-0020086-T01-IM6	SOMATIC	GREM1	CHRNA6	15	8	33023043	42632131	Exon 2 of GREM1(+)	IGR: 24Kb before CHRNA6(-)	GRCh37	TRANSLOCATION	GREM1 (NM_013372) rearrangement: t(8;15)(p11.21;q13.3)(chr8:g.42632131::chr15:g.33023043)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	16	0	5
P-0020107-T01-IM6	SOMATIC	LINC01347	AKT3	1	1	242740337	243858944	IGR: 479Kb before LINC01347(-)	Exon 2 of AKT3(-)	GRCh37	DUPLICATION	AKT3 (NM_005465) Rearrangement : c.121:AKT3_chr1:g.242740337del	PRECISE		MANUAL_OK	5to3	-	1118607	NA	0	21	10	22
P-0020111-T01-IM6	SOMATIC	LINC00114	INSR	21	19	40105340	7126683	IGR: 6Kb before LINC00114(-)	Intron of INSR(-):21bp before exon 16	GRCh37	TRANSLOCATION	INSR (NM_000208) Rearrangement : t(19,21)(p13.2,q22.2)(chr19:g.7126683::chr21:g.:40105340)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	38
P-0020111-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39943514	42866752	Intron of ERG(-):4Kb after exon 3	Intron of TMPRSS2(-):247bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement : c.127-247:TMPRSS2_c.39+4072:ERGinv	PRECISE		MANUAL_OK	3to3	-	2923238	NA	0	11	10	10
P-0020120-T01-IM6	SOMATIC	PIK3R3	PPAP2B	1	1	46512414	56333264	Intron of PIK3R3(-):117bp before exon 8	IGR: 627Kb before PPAP2B(-)	GRCh37	INVERSION	PIK3R3 (NM_003629) rearrangement: c.942-117_g.56333264del	PRECISE		MANUAL_OK	3to3	-	9820850	NA	0	10	10	9
P-0020120-T01-IM6	SOMATIC	CBL	CBL	11	11	119148596	119150199	Intron of CBL(+):42bp after exon 7	Intron of CBL(+):776bp after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+42_c.1431+776del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1603	NA	0	23	10	28
P-0020122-T01-IM6	SOMATIC	PPARG	IQSEC1	3	3	12475450	13048437	Exon 7 of PPARG(+)	Intron of IQSEC1(-):65Kb before exon 2	GRCh37	DELETION	PPARG (NM_015869) rearrangement: c.1324_g.13048437del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	572987	NA	0	67	10	398
P-0020124-T01-IM6	SOMATIC	ALK	EML4	2	2	29447955	42523535	Intron of ALK(-):371bp after exon 19	Intron of EML4(+):879bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused in-frame with ALK exons 20-29): c.1489+879:EML4_c.3172+372:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075580	NA	0	49	10	46
P-0020125-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138537003	140492175	Exon 17 of KIAA1549(-)	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-17 fused to BRAF exons 9-18): c.5260:KIAA1549_c.1140+1933:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIAA1549:BRAF}	1955172	NA	0	24	10	24
P-0020131-T01-IM6	SOMATIC	MPHOSPH6	PBRM1	16	3	82160285	52595716	IGR: 21Kb before MPHOSPH6(-)	Intron of PBRM1(-):66bp after exon 26	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(3;16)(p21.1;q23.3)(chr3:g.52595716::chr16:g.82160285)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	53	10	55
P-0020132-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890646	42867623	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):c.127-1118:TMPRSS2_c.39+56940:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2976977	NA	0	18	10	19
P-0020135-T01-IM6	SOMATIC	FGFR2	BTBD16	10	10	123239702	124049317	Intron of FGFR2(-):167bp before exon 18	Intron of BTBD16(+):106bp before exon 6	GRCh37	INVERSION	FGFR2 (NM_000141) - BTBD16 (NM_144587) rearrangement: c.2302-167:FGFR2_c.386-107: BTBD16inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FGFR2:BTBD16}	809615	NA	0	41	0	77
P-0020141-T01-IM6	SOMATIC	DMD	TMPRSS2	X	21	32030014	42839577	Intron of DMD(-):43Kb before exon 17	Intron of TMPRSS2(-):83bp after exon 13	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - DMD (NM_004006) rearrangement: t(21;X)(q22.3;p21.1)(chr21:g.42839577::chrX:g.32030014)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	44	10	48
P-0020145-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135777097	135778808	Intron of TSC1(-):11bp before exon 19	Intron of TSC1(-):229bp after exon 17	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.2208+230_c.2392-11del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1711	NA	0	35	10	39
P-0020148-T01-IM6	SOMATIC	STEAP4	SOX2	7	3	87911114	181430851	Intron of STEAP4(-):720bp before exon 5	Exon 1 of SOX2(+)	GRCh37	TRANSLOCATION	SOX2 (NM_003106) - STEAP4 (NM_024636) rearrangement: t(3;7)(q26.33;q21.12)(chr3:g.181430851::chr7:g.87911114)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SOX2:STEAP4}	0	NA	0	32	10	31
P-0020149-T01-IM6	SOMATIC	OLFM2	CARM1	19	19	10013512	11031616	Intron of OLFM2(-):33Kb after exon 1	Exon 13 of CARM1(+)	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: g.10013512_c.1531del	PRECISE		MANUAL_OK	3to5	-	1018104	NA	0	6	10	7
P-0020151-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187628838	187631940	Exon 2 of FAT1(-)	5-UTR of FAT1(-):122Kb before coding start	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.2144_c.-18-941inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3102	NA	0	14	10	18
P-0020157-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38287302	38288716	Exon 4 of FGFR1(-)	Intron of FGFR1(-):1Kb before exon 4	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.191-1250_c.355del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1414	NA	0	16	10	17
P-0020158-T01-IM6	SOMATIC	NBN	TG	8	8	90990573	134037193	Intron of NBN(-):22bp before exon 5	Intron of TG(+):3Kb after exon 40	GRCh37	INVERSION	TG (NM_003235) - NBN (NM_002485) rearrangement: c.7036+2798:TG_c.481-22:NBNinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {TG:NBN}	43046620	NA	0	6	10	6
P-0020161-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27092670	27100585	Intron of ARID1A(+):41bp before exon 9	Intron of ARID1A(+):196bp after exon 17	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.2733-42_c.4101+196dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : out of frame	7915	NA	0	58	10	60
P-0020161-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57473396	57484706	Intron of GNAS(+):599bp before exon 3	Intron of GNAS(+):32bp before exon 10	GRCh37	DUPLICATION	GNAS (NM_000516) rearrangement: c.213-600_c.719-33dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : out of frame	11310	NA	0	6	10	6
P-0020161-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117877845	117878987	Intron of RAD21(-):979bp after exon 2	5-UTR of RAD21(-):19Kb before coding start	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.-19_c.144+980inv	PRECISE		MANUAL_OK	3to3	-	1142	NA	0	9	10	9
P-0020165-T01-IM6	SOMATIC	ZNF420	POLD1	19	19	37555008	50910276	IGR: 14Kb before ZNF420(+)	Exon 13 of POLD1(+)	GRCh37	DUPLICATION	POLD1 (NM_002691) rearrangement: chr19:g.37555008_c.1531dup	PRECISE		MANUAL_OK	5to3	-	13355268	NA	0	31	10	34
P-0020165-T01-IM6	SOMATIC	CD79A	SYMPK	19	19	42383071	46326866	Exon 2 of CD79A(+)	Intron of SYMPK(-):136bp before exon 20	GRCh37	INVERSION	SYMPK (NM_004819) - CD79A (NM_001783) rearrangement: c.2600-136:SYMPK_c.91:CD79Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SYMPK:CD79A}	3943795	NA	0	42	10	53
P-0020167-T01-IM6	SOMATIC	MDC1	C6orf15	6	6	30682859	31067025	Exon 2 of MDC1(-)	IGR: 12Kb before C6orf15(-)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.94_chr6:g.31067025dup	PRECISE		MANUAL_OK	5to3	-	384166	NA	0	20	10	20
P-0020169-T01-IM6	SOMATIC	TEK	TEK	9	9	27185407	27192925	Intron of TEK(+):75bp before exon 9	Intron of TEK(+):304bp after exon 11	GRCh37	DUPLICATION	TEK (NM_000459) rearrangement: c.1183-76_c.1624+304dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	7518	NA	0	3	9	3
P-0020175-T01-IM6	SOMATIC	CALR	CALR	19	19	13050739	13053843	Intron of CALR(+):127bp before exon 4	Intron of CALR(+):507bp before exon 8	GRCh37	DUPLICATION	CALR (NM_004343) Rearrangement : c.398-128_c.961-508dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	3104	NA	0	4	10	4
P-0020180-T01-IM6	SOMATIC	FANCA	MTUS2	16	13	89851360	29866903	Exon 15 of FANCA(-)	Intron of MTUS2(+):11Kb after exon 4	GRCh37	TRANSLOCATION	MTUS2 (NM_001033602) - FANCA (NM_000135) Rearrangement: t(13,16)(q12.3,q24.3)(chr13:g.29866903::chr16:g.89851360)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MTUS2:FANCA}	0	NA	0	15	10	15
P-0020180-T02-IM6	SOMATIC	FANCA	MTUS2	16	13	89851360	29866903	Exon 15 of FANCA(-)	Intron of MTUS2(+):11Kb after exon 4	GRCh37	TRANSLOCATION	MTUS2 (NM_001033602) - FANCA (NM_000135) Rearrangement: t(13,16)(q12.3,q24.3)(chr13:g.29866903::chr16:g.89851360)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MTUS2:FANCA}	0	NA	0	112	10	111
P-0020186-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60412915	123241148	Intron of BICC1(+):32Kb after exon 2	Intron of FGFR2(-):2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exon17 fused with BICC1 exon3 ): c.2302-1613:FGFR2_c.237+32254:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62828233	NA	0	15	10	20
P-0020188-T01-IM6	SOMATIC	EZH1	EZH1	17	17	40872315	40875225	Exon 7 of EZH1(-)	Intron of EZH1(-):292bp before exon 6	GRCh37	DELETION	EZH1(NM_001991) Rearrangement : c.367-292_640del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2910	NA	0	5	10	5
P-0020189-T01-IM6	SOMATIC	APC	WDFY3-AS2	5	4	112175197	85927495	Exon 16 of APC(+)	5-UTR of WDFY3-AS2(+):673bp before coding start	GRCh37	TRANSLOCATION	APC (NM_000038) Rearrangement: t(4,5)(q21.23,q22.1)(chr4:g.85927495::chr5:g.112175197)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WDFY3-AS2:APC}	0	NA	0	24	10	24
P-0020218-T01-IM6	SOMATIC	TECRL	EPHA5	4	4	65266846	66280062	Intron of TECRL(-):8Kb after exon 1	Exon 7 of EPHA5(-)	GRCh37	DUPLICATION	TECRL (NM_001010874) - EPHA5 (NM_004439) rearrangement: c.234+7990:TECRL_c.1627:EPHA5dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TECRL:EPHA5}	1013216	NA	0	29	10	30
P-0020219-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55090723	55223451	Intron of EGFR(+):4Kb after exon 1	Intron of EGFR(+):71bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+3665_c.890-72del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	132728	NA	0	20	10	21
P-0020219-T01-IM6	SOMATIC	ELAVL2	TEK	9	9	24024494	27206770	IGR: 334Kb before ELAVL2(-)	Exon 15 of TEK(+)	GRCh37	DELETION	TEK (NM_000459) rearrangement: chr9:g.24024494_c.2555del	PRECISE		MANUAL_OK	3to5	-	3182276	NA	0	27	10	28
P-0020223-T01-IM6	SOMATIC	NF1	BCAS3	17	17	29556578	59403901	Intron of NF1(+):95bp after exon 21	Intron of BCAS3(+):42Kb before exon 24	GRCh37	DELETION	NF1 (NM_001042492) - BCAS3 (NM_001099432) rearrangement: c.2850+95:NF1_c.2471-41787:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NF1:BCAS3}	29847323	NA	0	17	10	17
P-0020223-T01-IM6	SOMATIC	SESN1	NDST3	6	4	109323487	119064248	Exon 2 of SESN1(-)	Intron of NDST3(+):462bp before exon 6	GRCh37	TRANSLOCATION	NDST3 (NM_004784) - SESN1 (NM_014454) rearrangement: t(10;11)(q26;q21)(chr10:g.126280260::chr11:g.17734059)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NDST3:SESN1}	0	NA	0	41	10	41
P-0020231-T01-IM6	SOMATIC	MSH6	MSH6	2	2	47947631	48026454	IGR: 63Kb before MSH6(+)	Exon 4 of MSH6(+)	GRCh37	DELETION	MSH6 (NM_000179) rearrangement: chr2:g.47947631_c.1332:MSH6del	PRECISE		MANUAL_OK	3to5	-	78823	NA	0	6	10	5
P-0020237-T01-IM6	SOMATIC	HCG17	ROS1	6	6	30239323	117647689	3-UTR of HCG17(-):55Kb after coding stop	Intron of ROS1(-):112bp before exon 33	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: chr6:g.30239323_c.5367-112:ROS1del	IMPPRECISE		MANUAL_OK	3to5	-	87408366	NA	0	3	0	3
P-0020240-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061010	38310541	Exon 2 of FOXA1(-)	IGR: 252Kb before FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: chr14:g.38310541_c.979:FOXA1del	PRECISE		MANUAL_OK	3to5	-	249531	NA	0	47	10	53
P-0020243-T01-IM6	SOMATIC	BACE2	TMPRSS2	21	21	42653772	42870472	3-UTR of BACE2(+):114Kb after coding stop	Intron of TMPRSS2(-):356bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: chr21:g.42653772_c.-56-356:TMPRSS2inv	IMPPRECISE		MANUAL_OK	5to5	-	216700	NA	0	36	0	47
P-0020244-T01-IM6	SOMATIC	SMARCA4	FKBP8	19	19	11144929	18651301	Intron of SMARCA4(+):53bp after exon 28	Intron of FKBP8(-):771bp before exon 3	GRCh37	DELETION	SMARCA4 (NM_003072) - FKBP8 (NM_012181) rearrangement: c.3951+53:SMARCA4_c.293-771:FKBP8del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	7506372	NA	0	4	10	6
P-0020245-T01-IM6	SOMATIC	APC	APC	5	5	112175312	112176877	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4021_c.5586del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1565	NA	0	9	10	10
P-0020249-T01-IM6	SOMATIC	ERBB2	GRB7	17	17	37879426	37893948	Intron of ERBB2(+):145bp before exon 17	Promoter of GRB7(+):213bp from tx start	GRCh37	DUPLICATION	GRB7 (NM_005310) - ERBB2 (NM_004448) rearrangement: c.-489:GRB7_c.1947-146:ERBB2dup	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {GRB7:ERBB2}	14522	NA	0	26	0	32
P-0020263-T01-IM6	SOMATIC	CLYBL	ERCC5	13	13	100431987	103515191	Intron of CLYBL(+):7Kb after exon 2	Exon 8 of ERCC5(+)	GRCh37	DELETION	CLYBL (NM_206808) - ERCC5 (NM_000123) rearrangement: c.187+6723:CYLBL_c.1692:ERCC5del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CLYBL:ERCC5}	3083204	NA	0	16	10	16
P-0020263-T01-IM6	SOMATIC	CTNNB1	PIGR	3	1	41266567	207117851	Exon 4 of CTNNB1(+)	5-UTR of PIGR(-):14Kb before coding start	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) rearrangement: t(1;3)(q32.1;p22.1)(chr1:g.207117851::chr3:g.41266567)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CTNNB1:PIGR}	0	NA	0	18	0	19
P-0020263-T01-IM6	SOMATIC	GALNT12	TGFBR1	9	9	101610555	101891195	Intron of GALNT12(+):678bp before exon 10	Exon 2 of TGFBR1(+)	GRCh37	DELETION	GALNT12 (NM_024642) - TGFBR1 (NM_004612) rearrangement: c.1606-679:GALNT12_c.156:TGFBR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GALNT12:TGFBR1}	280640	NA	0	20	10	21
P-0020273-T02-IM6	SOMATIC	KIF5B	RET	10	10	32311645	43611819	Intron of KIF5B(-):130bp after exon 16	Intron of RET(+):212bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1914+131:KIF5B_c.2137-213:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11300174	NA	0	7	10	8
P-0020293-T01-IM6	SOMATIC	CBL	CBL	11	11	119156802	119167714	Intron of CBL(+):526bp after exon 11	Exon 13 of CBL(+)	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1941+526_c.2123del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10912	NA	0	24	10	28
P-0020293-T01-IM6	SOMATIC	MSH2	KCNK12	2	2	47693873	47736084	Exon 10 of MSH2(+)	IGR: 12Kb before KCNK12(-)	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.1587_chr2:g.47736084inv	PRECISE		MANUAL_OK	5to5	-	42211	NA	0	20	10	27
P-0020305-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12022382	12032458	Exon 5 of ETV6(+)	Intron of ETV6(+):5Kb before exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.488_c.1010-4921del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10076	NA	0	87	0	95
P-0020306-T01-IM6	SOMATIC	CARM1	OVGP1	19	1	11031667	111953456	Intron of CARM1(+):45bp after exon 13	IGR: 3Kb before OVGP1(-)	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(1;19)(p13.2;p13.2)(chr1:g.111953456::chr19:g.11031667)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	13
P-0020309-T01-IM6	SOMATIC	ELF3	KCNK2	1	1	201980424	215436498	Exon 2 of ELF3(+)	IGR: 180Kb before KCNK2(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.160:ELF3_chr1:g.215436498del	IMPPRECISE		MANUAL_OK	3to5	-	13456074	NA	0	5	0	6
P-0020313-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27083856	27088033	Intron of ARID1A(+):3Kb before exon 5	Intron of ARID1A(+):69bp after exon 6	GRCh37	DUPLICATION	ARID1A (NM_006015) Rearrangement : c.1921-3491_c.2251+69dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	4177	NA	0	42	10	44
P-0020323-T01-IM6	SOMATIC	CALR	NFIX	19	19	13054309	13107228	Intron of CALR(+):41bp before exon 8	Intron of NFIX(+):550bp after exon 1	GRCh37	DUPLICATION	NFIX (NM_002501) - CALR (NM_004343) Rearrangement : c.27+550:NFIX_c.961-42:CALRdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NFIX:CALR}	52919	NA	0	14	10	14
P-0020334-T01-IM6	SOMATIC	BAZ1A	MAX	14	14	35276358	65544728	Intron of BAZ1A(-):298bp after exon 6	Exon 4 of MAX(-)	GRCh37	INVERSION	MAX (NM_002382) rearrangement: g.35276358_c.198inv	PRECISE		MANUAL_OK	3to3	-	30268370	NA	0	12	10	12
P-0020334-T01-IM6	SOMATIC	TSHR	TSHR	14	14	81536622	81557477	Intron of TSHR(+):2Kb after exon 3	Exon 5 of TSHR(+)	GRCh37	INVERSION	TSHR (NM_000369) rearrangement: c.317+1950_c.457inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	20855	NA	0	11	10	11
P-0020339-T01-IM6	SOMATIC	BRCA1	DCXR	17	17	41245251	79997295	Exon 10 of BRCA1(-)	Promoter of DCXR(-):4Kb from tx start	GRCh37	DUPLICATION	BRCA1 (NM_007294) - DCXR (NM_016286) Rearrangement : c.2297:BRCA1_c.-1737:DCXR	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRCA1:DCXR}	38752044	NA	0	13	10	15
P-0020341-T01-IM6	SOMATIC	CREBBP	LOC102724927	16	16	3929966	3963526	5-UTR of CREBBP(-):152Kb before coding start	IGR: 34Kb before LOC102724927(-)	GRCh37	DELETION	CREBBP (NM_004380) Rearrangement :  chr16:g.3963526_c.-49:CREBBPdel	PRECISE		MANUAL_OK	3to5	-	33560	NA	0	30	10	41
P-0020353-T01-IM6	SOMATIC	COQ4	ABL1	9	9	131090318	133747559	Intron of COQ4(+):2Kb after exon 4	Exon 5 of ABL1(+)	GRCh37	DUPLICATION	ABL1 (NM_005157) - COQ4 (NM_016035) rearrangement: c.866:ABL1_c.402+2158:COQ4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ABL1:COQ4}	2657241	NA	0	28	10	32
P-0020355-T01-IM6	SOMATIC	DNAJB1	PLVAP	19	19	14627296	17484459	Exon 2 of DNAJB1(-)	Intron of PLVAP(-):3Kb after exon 1	GRCh37	DUPLICATION	DNAJB1 (NM_006145) - PLVAP (NM_031310) rearrangement: c.774:DNAJB1_c.369+3270:PLVAPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNAJB1:PLVAP}	2857163	NA	0	14	10	16
P-0020355-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1741117	1808807	Intron of TACC3(+):311bp before exon 11	Intron of FGFR3(+):35bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 11-16): c.2275-36:FGFR3_c.1942-312:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67690	NA	0	2	10	2
P-0020356-T01-IM6	SOMATIC	INPPL1	PHOX2A	11	11	71945374	71961084	Exon 20 of INPPL1(+)	IGR: 11Kb before PHOX2A(-)	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.2262_g.71961084del	PRECISE		MANUAL_OK	3to5	-	15710	NA	0	13	10	13
P-0020358-T01-IM6	SOMATIC	YWHAE	NOTCH1	17	9	1296199	139397624	Intron of YWHAE(-):7Kb after exon 1	Intron of NOTCH1(-):9bp after exon 27	GRCh37	TRANSLOCATION	YWHAE (NM_006761) - NOTCH1 (NM_017617) rearrangement: t(9;17)(q34.3;p13.3)(chr9:g.139397624::chr17:g.1296199)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {YWHAE:NOTCH1}	0	NA	0	108	10	115
P-0020365-T01-IM6	SOMATIC	POLE	POLE	12	12	133235918	133238245	Exon 26 of POLE(-)	Exon 24 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.3238_c.2732del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2327	NA	0	15	10	18
P-0020377-T01-IM6	SOMATIC	DNMT1	MEF2C-AS1	19	5	10246818	88595050	Exon 37 of DNMT1(-)	IGR: 410Kb before MEF2C-AS1(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement : t(5;19)(q14.3;q13.2)(chr5:g.88595050::chr19:g.10246818)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0020387-T01-IM6	SOMATIC	ALK	DCTN1	2	2	29446896	74591964	Intron of ALK(-):502bp before exon 20	Intron of DCTN1(-):237bp after exon 23	GRCh37	DELETION	DCTN1 (NM_004082) - ALK (NM_004304) rearrangement: c.3196+238:DCTN1_c.3173-502:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DCTN1:ALK}	45145068	NA	0	31	10	32
P-0020394-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226544	2228123	Exon 27 of DOT1L(+)	Intron of DOT1L(+):997bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4024_c.4606+997inv	IMPPRECISE		MANUAL_OK	5to5	-	1579	NA	0	7	0	7
P-0020395-T01-IM6	SOMATIC	RECQL	LINC00477	12	12	21628443	24778811	Exon 11 of RECQL(-)	IGR: 59Kb before LINC00477(-)	GRCh37	DELETION	RECQL (NM_032941) rearrangement: c.1175:RECQL_chr12:g.24778811del	PRECISE		MANUAL_OK	3to5	-	3150368	NA	0	9	10	9
P-0020396-T01-IM6	SOMATIC	RB1	LINC00378	13	13	48955612	61408465	Intron of RB1(+):33bp after exon 17	IGR: 161Kb before LINC00378(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1695+33:RB1_chr13:g.61408465del	PRECISE		MANUAL_OK	3to5	-	12452853	NA	0	62	10	68
P-0020401-T01-IM6	SOMATIC	KDM6A	KANTR	X	X	44922984	53174057	Exon 16 of KDM6A(+)	Promoter of KANTR(+):51Kb from tx start	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.1845:KDM6A_chrX:g.53174057inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8251073	NA	0	2	10	2
P-0020402-T01-IM6	SOMATIC	ETV6	C12orf74	12	12	12016969	93097480	Intron of ETV6(+):5Kb before exon 5	5-UTR of C12orf74(+):3Kb before coding start	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-5389:ETV6_chr12:g.93097480del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ETV6:C12orf74}	81080511	NA	0	13	10	13
P-0020402-T01-IM6	SOMATIC	EWSR1	SMARCA2	22	9	29684038	2157696	Intron of EWSR1(+):556bp before exon 9	Intron of SMARCA2(+):4Kb before exon 28	GRCh37	TRANSLOCATION	SMARCA2 (NM_003070) - EWSR1 (NM_013986) rearragement: t(9;22)(p24.3;q12.2)(chr9:g.2157696::chr22:g.29684038)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SMARCA2:EWSR1}	0	NA	0	16	10	16
P-0020406-T01-IM6	SOMATIC	TP53	TP53	17	17	7569610	7574378	Promoter of TP53(-):2Kb from tx start	Intron of TP53(-):345bp before exon 10	GRCh37	DELETION	TP53 (NM_000546) rearrangement:  c.994-345_c.*3317del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4768	NA	0	17	10	65
P-0020408-T01-IM6	SOMATIC	ALK	EML4	2	2	29446779	42523883	Intron of ALK(-):385bp before exon 20	Intron of EML4(+):1Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+1227:EML4_c.3173-385:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077104	NA	0	60	10	59
P-0020410-T01-IM6	SOMATIC	DDX21	FGFR2	10	10	70718702	123243048	Intron of DDX21(+):859bp before exon 2	Intron of FGFR2(-):163bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - DDX21 (NM_004728) fusion (FGFR2 exons 1-17 fused to DDX21 exons 2-15 ): c.2301+164:FGFR2_c.88-860:DDX21inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:DDX21}	52524346	NA	0	36	10	50
P-0020414-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264978	41266592	5-UTR of CTNNB1(+):581bp before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-534_c.389del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1614	NA	0	23	10	23
P-0020416-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684518	32415720	Intron of EWSR1(+):76bp before exon 9	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32415720::chr22:g.29684518)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	41	10	39
P-0020424-T01-IM6	SOMATIC	GPS2	GPS2	17	17	7217977	7219419	Intron of GPS2(-):61bp before exon 3	Promoter of GPS2(-):3Kb from tx start	GRCh37	DELETION	GPS2 (NM_004489) rearrangement: c.95-61_c.-837del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1442	NA	0	30	10	30
P-0020424-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877794	42879287	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):589bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.55+590:TMPRSS2_c.40-60250:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3001493	NA	0	22	10	22
P-0020429-T01-IM6	SOMATIC	CYYR1	EPHB1	21	3	27793100	134873178	IGR: 45Kb before CYYR1(-)	Intron of EPHB1(+):60bp after exon 6	GRCh37	TRANSLOCATION	EPHB1 (NM_004441) rearrangement: t(3;21)(q22.2;q21.3)(chr3:g.134873178::chr21:g.27793100)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	54	10	54
P-0020430-T01-IM6	SOMATIC	TP53	TP53	17	17	7573642	7577101	Intron of TP53(-):284bp after exon 10	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1100+285_c.837del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3459	NA	0	23	10	23
P-0018779-T02-IM6	SOMATIC	SUFU	CNNM2	10	10	104264000	104718624	Exon 1 of SUFU(+)	Intron of CNNM2(+):39Kb after exon 1	GRCh37	DUPLICATION	CNNM2 (NM_017649) - SUFU (NM_016169) rearrangement: c.1621+38766:CNNM2_c.91:SUFUdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CNNM2:SUFU}	454624	NA	0	47	10	47
P-0025815-T02-IM6	SOMATIC	TPM3	NTRK1	1	1	154134381	156844230	Intron of TPM3(-):4Kb before exon 7	Intron of NTRK1(+):38bp after exon 9	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3  exons 1-6 with NTRK1 exons 10-17): c.*6032:TPM3_c.1195+38:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2709849	NA	0	14	10	17
P-0025851-T01-IM6	SOMATIC	JAK3	COPE	19	19	17945957	19012539	Exon 15 of JAK3(-)	Intron of COPE(-):1Kb before exon 8	GRCh37	DELETION	COPE (NM_007263) - JAK3 (NM_000215) rearrangement: c.736-1281:COPE_c.1982:JAK3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {COPE:JAK3}	1066582	NA	0	22	10	22
P-0025851-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878297	42869296	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):749bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 2 fused to ERG exons 4-11):c.c.126+750:TMPRSS2_c.40-60753:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2990999	NA	0	32	0	33
P-0025857-T01-IM6	SOMATIC	AXIN1	ASB13	16	10	347033	5637288	Intron of AXIN1(-):22bp after exon 7	IGR: 44Kb before ASB13(-)	GRCh37	TRANSLOCATION	AXIN1 (NM_003502) rearrangement: t(10;15)(p15.1;p13.3)(chr10:g.5637288::chr16:g.347033)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	74	10	84
P-0025947-T01-IM6	SOMATIC	BCL2	NFATC1	18	18	60910289	77261816	Intron of BCL2(-):75Kb after exon 2	Intron of NFATC1(+):15Kb after exon 9	GRCh37	DELETION	BCL2 (NM_000633) Rearrangement :  c.585+75026:BCL2_c.2475+15186:NFATC1del	PRECISE		MANUAL_OK	3to5	-	16351527	NA	0	7	8	7
P-0025947-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30648377	30703237	Exon 1 of TGFBR2(+)	Intron of TGFBR2(+):10Kb before exon 5	GRCh37	INVERSION	TGFBR2 (NM_001024847) Rearrangement : c.2_c.530-9893inv	PRECISE		MANUAL_OK	5to5	-	54860	NA	0	47	10	64
P-0025950-T01-IM6	SOMATIC	MIR4422	NOTCH2	1	1	56269765	120510206	IGR: 578Kb before MIR4422(+)	Exon 8 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) Rearrangement : chr1:g.56269765_c.1303inv	PRECISE		MANUAL_OK	5to5	-	64240441	NA	0	19	10	25
P-0025950-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44725131	44929454	IGR: 7Kb before KDM6A(+)	Exon 17 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) Rearrangement : chrX:g.44725131_c.2554del	PRECISE		MANUAL_OK	3to5	-	204323	NA	0	28	10	28
P-0026033-T01-IM6	SOMATIC	NFKBIA	MBIP	14	14	35873103	36803740	Intron of NFKBIA(-):99bp before exon 2	IGR: 36Kb before MBIP(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.228-99:NFKBIA_chr14:g.36803740del	IMPPRECISE		MANUAL_OK	3to5	-	930637	NA	0	5	0	5
P-0026038-T01-IM6	SOMATIC	EPB41L1	SRC	20	20	34767858	36029862	Intron of EPB41L1(+):1Kb after exon 6	Intron of SRC(+):142bp before exon 11	GRCh37	DELETION	EPB41L1 (NM_012156) - SRC (NM_198291) rearrangement: c.490+1264:EPB41L1_c.1040-143:SRCdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EPB41L1:SRC}	1262004	NA	0	4	5	4
P-0026038-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151828822	151851190	IGR: 3Kb before KMT2C(-)	Exon 48 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.12181_c.*5095del	PRECISE		MANUAL_OK	5to5	-	22368	NA	0	6	10	6
P-0026039-T01-IM6	SOMATIC	TYRO3	MGA	15	15	41871206	41961828	3-UTR of TYRO3(+):20Kb after coding stop	Exon 2 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.736:MGA_chr15:g.41871206inv	PRECISE		MANUAL_OK	3to3	-	90622	NA	0	13	10	12
P-0026056-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29687681	29784273	Intron of EWSR1(+):93bp after exon 10	5-UTR of AP1B1(-):59Kb before coding start	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.1027+93:EWSR1_chr22:g.29784273inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {AP1B1:EWSR1}	96592	NA	0	4	10	6
P-0026062-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139352799	139390661	Intron of SEC16A(-):763bp before exon 18	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) - SEC16A (NM_014866) rearrangement: c.7530:NOTCH1_c.5410-763:SEC16Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	37862	NA	0	193	10	203
P-0026063-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187542133	187718076	Exon 10 of FAT1(-)	IGR: 209Kb before FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: chr4:g.187718076_c.5607:FAT1del	PRECISE		MANUAL_OK	3to5	-	175943	NA	0	11	10	13
P-0026072-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39986557	42873866	3-UTR of ERG(-):47Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 fused to ERG exons 2-11): c.56-3750:TMPRSS2_c.-149-29688:ERG	PRECISE		MANUAL_OK	3to5	-	2887309	NA	0	29	10	149
P-0026079-T01-IM6	SOMATIC	BRD4	FAR1	19	11	15383660	13726924	Exon 2 of BRD4(-)	Intron of FAR1(+):3Kb before exon 4	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - FAR1 (NM_032228) Rearrangement: t(11;19)(11p15.3;19p13.12)(chr11:g.13726924::chr19:g.15383660)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRD4:FAR1}	0	NA	0	38	10	52
P-0026081-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123089925	123215286	IGR: 4Kb before STAG2(+)	Exon 28 of STAG2(+)	GRCh37	DELETION	STAG2 (NM_001042749) Rearrangement : c.-4954_c.2832del	PRECISE		MANUAL_OK	3to5	-	125361	NA	0	33	10	35
P-0026123-T01-IM6	SOMATIC	SMAD4	MIR4522	18	17	48591841	25550206	Exon 9 of SMAD4(+)	IGR: 71Kb before MIR4522(-)	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) rearrangement: t(17;18)(q11.1;q21.1)(chr17:g.:25550206::chr18:g.48591841)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0026123-T01-IM6	SOMATIC	LINC00323	TMPRSS2	21	21	42266771	42843898	IGR: 247Kb before LINC00323(-)	Exon 10 of TMPRSS2(-)	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: chr21:g.42266771_c.1021inv	IMPPRECISE		MANUAL_OK	3to3	-	577127	NA	0	30	0	30
P-0026200-T01-IM6	SOMATIC	SULF2	SPEN	20	1	46321003	16265882	Intron of SULF2(-):2Kb before exon 5	Exon 15 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) - SULF2 (NM_018837) rearrangement: t(1;20)(p36.13;q13.12)(chr1:g16265882::chr20:g.46321003)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	10	29
P-0002685-T03-IM6	SOMATIC	NF1	NF1	17	17	29586168	29596952	Intron of NF1(+):21bp after exon 33	Intron of NF1(+):5Kb after exon 36	GRCh37	DELETION	NF1 (NM_001042492)  rearrangement: c.4430+21_c.4835+4595del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	10784	NA	0	32	10	38
P-0012223-T03-IM6	SOMATIC	CASC17	SOX9	17	17	69532781	70120449	IGR: 439Kb before CASC17(-)	Exon 3 of SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: chr17:g.69532781_c.1451del	PRECISE		MANUAL_OK	3to5	-	587668	NA	0	61	10	64
P-0022724-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55087636	55221886	Intron of EGFR(+):578bp after exon 1	Intron of EGFR(+):41bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion (EGFR exons 2-7 deleted)  : c.88+578_c.889+41del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	134250	NA	0	322	10	458
P-0026101-T01-IM6	SOMATIC	C11orf95	RELA	11	11	63532937	65429915	Intron of C11orf95(-):211bp before exon 3	Intron of RELA(-):239bp before exon 2	GRCh37	DUPLICATION	C11orf95 (NM_001144936) - RELA (NM_021975) fusion (C11orf95 exons 1-2 with RELA exons 2-11): c.638-211:C11orf95_c.8-239:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {C11orf95:RELA}	1896978	NA	0	47	10	48
P-0026106-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2B-AS1	9	9	21971053	22013106	Exon 2 of CDKN2Ap14ARF(-)	5-UTR of CDKN2B-AS1(+):108Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.471_chr9:g.22013106del	PRECISE		MANUAL_OK	3to5	-	42053	NA	NA	6	10	NA
P-0026106-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2B-AS1	9	9	21971053	22013106	Exon 2 of CDKN2Ap16INK4A(-)	5-UTR of CDKN2B-AS1(+):108Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.305_chr9:g.22013106del	PRECISE		MANUAL_OK	3to5	-	42053	NA	NA	6	10	NA
P-0026108-T01-IM6	SOMATIC	ALK	LOC388942	2	2	29448119	41387535	Intron of ALK(-):207bp after exon 19	IGR: 717Kb before LOC388942(+)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3172+208_chr2:g.41387535del	PRECISE		MANUAL_OK	3to5	-	11939416	NA	0	102	10	117
P-0026152-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42872732	14017550	Intron of TMPRSS2(-):3Kb before exon 2	Intron of ETV1(-):445bp before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_005656) and ETV1 (NM_001163147) Fusion (TMPRSS2 exon2 with ETV1 exon5) : t(7;21)(p21.3;q22.2)(chr7:g.14017550::chr21:g.42872732)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV1}	0	NA	0	87	10	91
P-0026194-T01-IM6	SOMATIC	KANSL1	RNF43	17	17	44274842	56448344	5-UTR of KANSL1(-):166Kb before coding start	Exon 3 of RNF43(-)	GRCh37	INVERSION	RNF43 (NM_017763) - KANSL1 (NM_001193465) rearrangement: c.303:RNF43_c.-89-25244:KANSL1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12173502	NA	0	76	10	112
P-0026196-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884340	42873713	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2989373	NA	0	19	10	19
P-0026199-T01-IM6	SOMATIC	NF1	NF1	17	17	29677316	29678373	Exon 50 of NF1(+)	Intron of NF1(+):901bp before exon 51	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7437_c.7458-902del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1057	NA	0	8	10	15
P-0026212-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890829	42873852	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11):  c.126+749:TMPRSS2_c.40-60753:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2983023	NA	0	8	10	9
P-0026156-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55092396	55222463	Intron of EGFR(+):5Kb after exon 1	Intron of EGFR(+):618bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+5338_c.889+618del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	130067	NA	0	111	0	121
P-0026159-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39826074	42877818	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused to ERG exon2) : c.55+2059:TMPRSS2_c.19-16879:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3051744	NA	0	6	10	7
P-0002652-T02-IM6	SOMATIC	ESR1	ESR1	6	6	152337383	152415525	Intron of ESR1(+):4Kb after exon 6	Exon 8 of ESR1(+)	GRCh37	DELETION	ESR1 (NM_001122740) rearrangement: c.1235+4454_c.1375del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	78142	NA	0	3	10	3
P-0022421-T02-IM6	SOMATIC	PAX8	LINC01191	2	2	113984994	114793050	Intron of PAX8(-):161bp before exon 10	IGR: 56Kb before LINC01191(+)	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: chr2:g.114793050_c.1088-161:PAX8inv	PRECISE		MANUAL_OK	3to3	-	808056	NA	0	13	10	20
P-0022421-T02-IM6	SOMATIC	HIST1H3D	HIST1H3D	6	6	26197407	26201354	Exon 2 of HIST1H3D(-)	Promoter of HIST1H3D(-):4Kb from tx start	GRCh37	DELETION	HIST1H3D (NM_003530) rearrangement: c.-2287_c.72del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3947	NA	0	9	10	10
P-0025686-T02-IM6	SOMATIC	TP53	TP53	17	17	7572952	7575137	Exon 11 of TP53(-)	Intron of TP53(-):1Kb before exon 10	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.994-1104_c.1157del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2185	NA	0	20	10	20
P-0025943-T02-IM6	SOMATIC	GLI1	PTCH1	12	9	57858877	98274082	Intron of GLI1(+):16bp before exon 5	Intron of PTCH1(-):5Kb after exon 1	GRCh37	TRANSLOCATION	GLI1 (NM_005269) - PTCH1 (NM_000264) rearrangement: t(9;12)(9q22.32;12q13.3)(chr9:g.98274082::chr12:g.57858877)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PTCH1:GLI1}	0	NA	0	83	10	101
P-0026139-T01-IM6	SOMATIC	FUT10	FGFR1	8	8	32978873	38273537	IGR: 249Kb before FUT10(-)	Exon 14 of FGFR1(-)	GRCh37	DELETION	FGFR1 (NM_001174067) Rearrangement : chr8:g.32978873_c.1798del	PRECISE		MANUAL_OK	3to5	-	5294664	NA	0	19	10	20
P-0026228-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39870278	42868990	Intron of ERG(-):8bp after exon 1	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused in-frame to ERG exons 2-10): c.126+1056:TMPRSS2_c.18+9:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2998712	NA	0	9	10	51
P-0026236-T01-IM6	SOMATIC	ZFHX3	LINC01568	16	16	72828286	73353359	Exon 9 of ZFHX3(-)	IGR: 67Kb before LINC01568(+)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8295:ZFHX3_chr16:g.73353359del	PRECISE		MANUAL_OK	3to5	-	525073	NA	0	34	10	35
P-0026236-T01-IM6	SOMATIC	TP53	TP53	17	17	7576369	7577129	Intron of TP53(-):483bp after exon 9	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.809_c.993+484del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	760	NA	0	18	10	21
P-0026239-T01-IM6	SOMATIC	BRCA1	MPP3	17	17	41215857	41901336	Intron of BRCA1(-):33bp after exon 17	Exon 10 of MPP3(-)	GRCh37	DUPLICATION	BRCA1 (NM_007294) - MPP3 (NM_001932) rearrangement: c.5152+34:BRCA1_c.647:MPP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRCA1:MPP3}	685479	NA	0	5	10	5
P-0026239-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269558	55272694	Intron of EGFR(+):83bp after exon 26	Intron of EGFR(+):254bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3162+83_c.3272-255del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3136	NA	0	99	10	222
P-0026239-T01-IM6	SOMATIC	COG5	KMT2C	7	7	106932248	151846174	Intron of COG5(-):6Kb after exon 12	Exon 52 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: chr7:g.106932248_c.12838:KMT2Cdel	PRECISE		MANUAL_OK	3to3	-	44913926	NA	0	10	10	9
P-0026245-T01-IM6	SOMATIC	KIAA1217	RET	10	10	24810792	43606666	Exon 13 of KIAA1217(+)	Exon 7 of RET(+)	GRCh37	DELETION	KIAA1217 (NM_019590) - RET (NM_020975) fusion (KIAA1217 exons 1-13 fused to RET exons 7-20): c.2390:KIAA1217_c.1275:RETdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KIAA1217:RET}	18795874	NA	0	13	0	13
P-0026247-T01-IM6	SOMATIC	SBNO2	STK11	19	19	1175647	1226452	Promoter of SBNO2(-):68Kb from tx start	Exon 9 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: chr19:g.1175647_c.1109-1:STK11del	PRECISE		MANUAL_OK	3to5	-	50805	NA	0	5	10	9
P-0026249-T01-IM6	SOMATIC	STK11	STK11	19	19	1206979	1210706	Exon 1 of STK11(+)	Intron of STK11(+):4Kb after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.67_c.290+3504del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3727	NA	0	15	10	17
P-0026375-T01-IM6	SOMATIC	TPM3	NTRK1	1	1	154142521	156844046	Intron of TPM3(-):354bp after exon 8	Intron of NTRK1(+):128bp before exon 9	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion (TPM3 exons 1-8 fused to NTRK1 exons 9-17): c.775+355:TPM3_c.1178-129:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2701525	NA	0	57	10	82
P-0026377-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868019	42873555	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exon 2) :c.56-3439:TMPRSS2_c.18+2268:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3005536	NA	0	16	10	17
P-0026107-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11802729	12006505	Promoter of ETV6(+):58bp from tx start	Intron of ETV6(+):10bp after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.-333_c.463+10del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	203776	NA	0	5	10	5
P-0026153-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39893467	42868435	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 fused to ERG exon4) : c.126+1611:TMPRSS2_c.39+54119:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2974968	NA	0	96	10	100
P-0026286-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88611476	12030395	Intron of NTRK3(-):35Kb before exon 14	Intron of ETV6(+):7Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused with NTRK3 exons 14-20): t(12;15)(p13.2;q25.3)(chr12:g.12030395::chr15:g.88611476)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	8	10	8
P-0026289-T01-IM6	SOMATIC	RB1	RB1	13	13	48947686	48951752	Intron of RB1(+):58bp after exon 12	Intron of RB1(+):582bp after exon 13	GRCh37	DELETION	RB1 (NM_000321) Rearrangement: c.1215+58_c.1332+582	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	4066	NA	0	5	9	5
P-0026290-T01-IM6	SOMATIC	RB1	RB1	13	13	48914657	48951064	Intron of RB1(+):2Kb before exon 3	Exon 13 of RB1(+)	GRCh37	DELETION	B1 (NM_000321) Rearrangement : c.265-2078_c.1226del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	36407	NA	0	31	10	31
P-0026298-T01-IM6	SOMATIC	STK11	STK11	19	19	1215405	1221139	Intron of STK11(+):3Kb before exon 2	Intron of STK11(+):72bp before exon 6	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-3011_c.735-73del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	5734	NA	0	36	10	36
P-0006005-T01-IM5	SOMATIC	TFE3	ASPSCR1	X	17	48895570	79966966	Exon 5 of TFE3(-)	Exon 8 of ASPSCR1(+)	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) reciprocal fusion (ASPSCR1 exons 1-8 with TFE3 exons 5-10) : t(X;17)(p11.23;q25.3)(chrX:g.48895570::chr17:g.79966966)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (ASPSCR1-TFE3)	0	NA	0	46	33	45
P-0025972-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55102488	55223097	Intron of EGFR(+):15Kb after exon 1	Intron of EGFR(+):425bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.88+15430_c.890-426del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	120609	NA	0	33	10	35
P-0026272-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187525022	187636565	Exon 19 of FAT1(-)	5-UTR of FAT1(-):127Kb before coding start	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.10658:FAT1_chr4:g.187636565inv	PRECISE		MANUAL_OK	3to3	-	111543	NA	0	10	10	10
P-0026273-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27055259	27102196	Intron of ARID1A(+):882bp before exon 2	Exon 19 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1138-883_c.5122dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	46937	NA	0	8	0	8
P-0026279-T01-IM6	SOMATIC	ERF	CIC	19	19	42764612	42794676	IGR: 13Kb before ERF(-)	Exon 10 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: chr19:g.42764612_c.1756:CICdel	PRECISE		MANUAL_OK	3to5	-	30064	NA	0	11	10	12
P-0026344-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111884826	111913944	Intron of BCL2L11(+):3Kb after exon 2	Intron of BCL2L11(+):6Kb after exon 3	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+3110_c.498+6220del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	29118	NA	0	32	10	32
P-0026351-T01-IM6	SOMATIC	TFE3	TFE3	X	X	48890315	48895321	Intron of TFE3(-):664bp after exon 8	Intron of TFE3(-):213bp after exon 5	GRCh37	DUPLICATION	TFE3 (NM_006521) rearrangement: c.885+214_c.1136+665dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	5006	NA	0	13	10	14
P-0026354-T01-IM6	SOMATIC	NTRK1	ARHGEF11	1	1	156845184	156906135	Intron of NTRK1(+):127bp before exon 12	Intron of ARHGEF11(-):285bp before exon 40	GRCh37	INVERSION	ARHGEF11 (NM_198236) - NTRK1 (NM_002529)  rearrangement: c.4631-285:ARHGEF11_c.1355-128:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ARHGEF11:NTRK1}	60951	NA	0	18	10	21
P-0026404-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684987	128652868	Intron of EWSR1(+):212bp after exon 9	Intron of FLI1(+):950bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) and FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr22:g.29684987::chr11:g.128652868)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	78	0	85
P-0026407-T01-IM6	SOMATIC	ALK	EML4	2	2	29446392	42550157	Exon 20 of ALK(-)	Intron of EML4(+):2Kb before exon 19	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-18 fused with ALK exons 20-29): c.1981-2450:EML4_c.3175:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13103765	NA	0	56	10	53
P-0026409-T01-IM6	SOMATIC	CIC	IQSEC1	19	3	42793933	13023744	Intron of CIC(+):66bp before exon 9	Intron of IQSEC1(-):40Kb before exon 2	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(3;19)(p25.2;q13.2)(chr3:g.13023744::chr19:g.42793933)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	89	10	90
P-0026409-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39848311	42878494	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.55+1383:TMPRSS2_c.18+21976:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3030183	NA	0	116	10	126
P-0026469-T01-IM6	SOMATIC	KMT2D	TUBA1B	12	12	49433663	49540958	Exon 31 of KMT2D(-)	IGR: 19Kb before TUBA1B(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.7890_chr12:g.49540958dup	PRECISE		MANUAL_OK	5to3	-	107295	NA	0	11	10	23
P-0026469-T01-IM6	SOMATIC	NPM1	WWTR1	5	3	170832668	149375212	Intron of NPM1(+):261bp after exon 9	5-UTR of WWTR1(-):137Kb before coding start	GRCh37	TRANSLOCATION	NPM1 (NM_002520) - WWTR1 (NM_001168280) rearrangement: t(3;5)(q25.1;q35.1)(chr3:g.149375212::chr5:g.170832668)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NPM1:WWTR1}	0	NA	0	30	10	28
P-0026469-T01-IM6	SOMATIC	JARID2	CDKN1A	6	6	15168676	36648342	IGR: 78Kb before JARID2(+)	5-UTR of CDKN1A(+):4Kb before coding start	GRCh37	INVERSION	CDKN1A (NM_078467) rearrangement: chr6:g.15168676_c.-6+1626inv	PRECISE		MANUAL_OK	5to5	-	21479666	NA	0	46	10	86
P-0026475-T01-IM6	SOMATIC	CCDC170	ESR1	6	6	151927845	152265421	Intron of CCDC170(+):9Kb before exon 10	Exon 5 of ESR1(+)	GRCh37	DUPLICATION	ESR1 (NM_001122740) - CCDC170 (NM_025059) rearrangement: c.874:ESR1_c.1711-8733:CCDC170dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ESR1:CCDC170}	337576	NA	0	36	10	41
P-0026479-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739215	1808893	Intron of TACC3(+):109bp before exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused with TACC3 exons 10-16- ): c.2325:FGFR3_c.1837-110:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69678	NA	0	11	10	11
P-0005393-T02-IM6	SOMATIC	CIC	CSMD1	19	8	42792009	4567107	Exon 6 of CIC(+)	Intron of CSMD1(-):72Kb before exon 2	GRCh37	TRANSLOCATION	CSMD1 (NM_033225) - CIC (NM_015125) rearrangement: t(8;19)(p23.2;q13.2)(chr8:g.4567107::chr19:g.42792009)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CSMD1:CIC}	0	NA	0	9	10	11
P-0024875-T01-IM6	SOMATIC	FAM19A2	NTRK1	12	1	62314748	156836548	5-UTR of FAM19A2(-):211Kb before coding start	Intron of NTRK1(+):153bp before exon 4	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) rearrangement: t(1;12)(q23.1;q14.1)(chr1:g.156836548::chr12:g.62314748)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {FAM19A2:NTRK1}	0	NA	0	31	0	41
P-0026151-T01-IM6	SOMATIC	CDH12	IL7R	5	5	22317231	35867504	5-UTR of CDH12(-):565Kb before coding start	Exon 3 of IL7R(+)	GRCh37	DUPLICATION	IL7R (NM_002185) Rearrangement : chr5:g.22317231_c.318dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	13550273	NA	0	11	10	13
P-0026162-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876407	42872550	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10): c.56-2434:TMPRSS2_c.40-58863:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996143	NA	0	89	10	96
P-0026166-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55209313	55222334	Intron of EGFR(+):665bp before exon 2	Intron of EGFR(+):489bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-666_c.889+489del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	13021	NA	0	99	10	1011
P-0026175-T01-IM6	SOMATIC	WWTR1	WWTR1	3	3	149242250	149245687	Intron of WWTR1(-):2Kb after exon 6	Exon 5 of WWTR1(-)	GRCh37	INVERSION	WWTR1 (NM_001168280) rearrangement: c.841_c.1018+1550inv	PRECISE		MANUAL_OK	3to3	-	3437	NA	0	27	10	26
P-0026175-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56171144	56174934	Intron of MAP3K1(+):7bp after exon 10	Intron of MAP3K1(+):6bp after exon 11	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.1965+7_c.2087+6del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3790	NA	0	10	10	10
P-0026390-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88651131	12016863	Intron of NTRK3(-):18Kb after exon 13	Intron of ETV6(+):5Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20): t(12;15)(p13.2;q25.3)(chr12:g.12016863::chr15:g.88651131)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	38	10	38
P-0026420-T01-IM6	SOMATIC	RET	TIMM23B	10	10	43611155	51582605	Intron of RET(+):876bp before exon 12	Intron of TIMM23B(+):150Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975): c.619-191:NCOA4_c.2137-877:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7971450	NA	0	13	10	13
P-0026422-T01-IM6	SOMATIC	RNF157	WHSC1L1	17	8	74191825	38172814	Intron of RNF157(-):17Kb after exon 2	Intron of WHSC1L1(-):119bp after exon 11	GRCh37	TRANSLOCATION	WHSC1L1 rearrangement: t(8;17)(p11.23;q25.1)(chr8:g.38172814::chr17:g.74191825)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	10	8
P-0026427-T01-IM6	SOMATIC	DNM2	CARM1	19	19	10906793	11019932	Exon 10 of DNM2(+)	Intron of CARM1(+):49bp after exon 4	GRCh37	DUPLICATION	CARM1 (NM_199141) - DNM2 (NM_001005361) rearrangement: c.558+49:CARM1_c.1196+678:DNM2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CARM1:DNM2}	113139	NA	0	54	10	61
P-0026428-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39836705	42874436	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-4320:TMPRSS2_c.19-19161:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3037731	NA	0	111	10	130
P-0026428-T01-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	9	128305340	128307462	Exon 7 of MAPKAP1(-)	Intron of MAPKAP1(-):2Kb before exon 7	GRCh37	DUPLICATION	MAPKAP1 (NM_001006617) rearrangement:  c.849-2015_c.956dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2122	NA	0	5	10	5
P-0026430-T01-IM6	SOMATIC	ETV6	GNB1	12	1	12019513	1785936	Intron of ETV6(+):3Kb before exon 5	5-UTR of GNB1(-):67Kb before coding start	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - GNB1 (NM_002074) rearrangement: t(1;12)(p36/33;p13.2)(chr1:g.1785936::chr12:g.12019513)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {ETV6:GNB1}	0	NA	0	200	10	198
P-0026448-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187510397	187566762	Intron of FAT1(-):23bp before exon 27	Intron of FAT1(-):6Kb before exon 4	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.13139-23_c.3581-5825del	PRECISE		MANUAL_OK	3to5	Deletion of 23 exons : in frame	56365	NA	0	5	10	5
P-0026449-T01-IM6	SOMATIC	EPAS1	EPAS1	2	2	46588189	46612064	Exon 6 of EPAS1(+)	3-UTR of EPAS1(+):87Kb after coding stop	GRCh37	INVERSION	EPAS1 (NM_001430) rearrangement: c.739_c.*265inv	PRECISE		MANUAL_OK	5to5	-	23875	NA	0	4	10	4
P-0006639-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89716516	89717828	Intron of PTEN(+):1Kb before exon 7	Intron of PTEN(+):52bp after exon 7	GRCh37	DUPLICATION	PTEN (NM_000314) Rearrangement : c.635-1094_c.801+52dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1312	NA	0	34	10	43
P-0026615-T01-IM6	SOMATIC	TBC1D3P2	AXIN2	17	17	60389491	63534420	IGR: 47Kb before TBC1D3P2(-)	Exon 5 of AXIN2(-)	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.1101:AXIN2_chr17:g.60389491inv	PRECISE		MANUAL_OK	5to5	-	3144929	NA	0	28	10	37
P-0026632-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157187584	157405982	Intron of ARID1B(+):5Kb before exon 3	Exon 6 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.1564-5164_c.2050del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	218398	NA	0	8	10	8
P-0005152-T02-IM6	SOMATIC	SOX17	XKR4	8	8	55371023	56152193	Intron of SOX17(+):18bp after exon 1	Intron of XKR4(+):118Kb before exon 2	GRCh37	DELETION	SOX17 (NM_022454) - XKR4 (NM_052898) Rearrangement : c.307+18:SOX17_c.807-118045:XKR4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SOX17:XKR4}	781170	NA	0	19	10	22
P-0017623-T02-IM6	SOMATIC	CAPZB	ARID1A	1	1	19793042	27089695	Intron of CAPZB(-):18Kb after exon 1	Exon 8 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) - CAPZB(NM_004930) Rearrangement: c.2651:ARID1A_c.3+18888:CAPZBinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1A:CAPZB}	7296653	NA	0	31	10	30
P-0023035-T02-IM6	SOMATIC	RFX3	NOTCH2	9	1	3219677	120458762	3-UTR of RFX3(-):5Kb after coding stop	Exon 34 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) Rearrangement : t(1,9)(p12,p24.2)(chr1:g.120458762::chr9:g.3219677)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	86	10	87
P-0026514-T01-IM6	SOMATIC	TMPRSS2	WISP3	21	6	42879671	112390072	Intron of TMPRSS2(-):205bp after exon 1	Intron of WISP3(+):469bp before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - WISP3 (NM_003880) Rearrangement : t(6,21)(q21,q22.2)(chr6:g.112390072::chr21:g.30301865)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TMPRSS2:WISP3}	0	NA	0	7	10	15
P-0019607-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11169386	11170461	Intron of SMARCA4(+):77bp before exon 32	Exon 33 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) Rearrangement : c.4534-78_c.4668del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1075	NA	0	18	0	18
P-0021328-T02-IM6	SOMATIC	CUL1	EZH2	7	7	148497862	148512171	3-UTR of CUL1(+):71Kb after coding stop	Intron of EZH2(-):40bp before exon 14	GRCh37	INVERSION	EZH2 (NM_004456) rearrangemenT: chr7:g.148497861_c.1547-42:EZH2inv	IMPPRECISE		MANUAL_OK	3to3	-	14309	NA	0	71	0	71
P-0024217-T02-IM6	SOMATIC	FLT3	RMDN2	13	2	28623971	38136570	Intron of FLT3(-):60bp before exon 7	IGR: 16Kb before RMDN2(+)	GRCh37	TRANSLOCATION	FLT3 (NM_004119) rearrangement: t(2;13)(p22.2;q12.2)(chr2:g.38136570::chr13:g.28623971)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	13	10	13
P-0024217-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39928235	42874589	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_00444) fusion (TMPRSS2 exons 1-2 fused with ERG exons 4-10): c.56-4473:TMPRSS2_c.39+19351:ERG	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2946354	NA	0	51	10	55
P-0026484-T01-IM6	SOMATIC	EP300	OR10H5	22	19	41573283	15895130	Exon 31 of EP300(+)	IGR: 10Kb before OR10H5(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(19;22)(p13.12;q13.2)(chr19:g.15895130::chr22:g.41573283)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	21	10	22
P-0026485-T01-IM6	SOMATIC	SMURF2	PDGFRB	17	5	62611355	149497245	Intron of SMURF2(-):9Kb before exon 2	Exon 22 of PDGFRB(-)	GRCh37	TRANSLOCATION	PDGFRB (NM_002609) rearrangement: t(5;17)(q32;q23.3)(chr5:g.149497245::chr17:g.62611355)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	61	10	61
P-0026485-T01-IM6	SOMATIC	MIR8074	PDPK1	19	16	51698785	2645831	IGR: 11Kb before MIR8074(-)	Exon 12 of PDPK1(+)	GRCh37	TRANSLOCATION	PDPK1 (NM_002613)  rearrangement: t(16;19)(p13.3;q13.41)(chr16:g.2645831::chr19:g.51698785)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	16	10	15
P-0026526-T01-IM6	SOMATIC	PTPRS	GLOD4	19	17	5231417	666026	Exon 14 of PTPRS(-)	Intron of GLOD4(-):3Kb before exon 9	GRCh37	TRANSLOCATION	PTPRS (NM_002850) - GLOD4 (NM_016080) rearrangement: t(17;19)(p13.3;p13.3)(chr17:g.666026::chr19:g.5231417)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PTPRS:GLOD4}	0	NA	0	55	10	64
P-0026526-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38188371	38205286	Intron of WHSC1L1(-):577bp after exon 5	Exon 2 of WHSC1L1(-)	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.404_c.1065+578del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16915	NA	0	13	10	13
P-0026614-T01-IM6	SOMATIC	SPECC1L	RET	22	10	24740413	43611575	Intron of SPECC1L(+):3Kb before exon 11	Intron of RET(+):456bp before exon 12	GRCh37	TRANSLOCATION	SPECC1L (NM_001145468) - RET (NM_020975) fusion (SPECC1L exons 1-10 fused to RET exons 12-20): t(10;22)(10q11.21;22q11.23)(chr10:g.43611575::chr22:g.24740413)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SPECC1L:RET}	0	NA	0	116	10	133
P-0026623-T01-IM6	SOMATIC	ETV6	BCL2L14	12	12	12024157	12134793	Intron of ETV6(+):1Kb after exon 5	IGR: 89Kb before BCL2L14(+)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.1009+1254:ETV6_chr12:g.12134793inv	PRECISE		MANUAL_OK	3to3	-	110636	NA	0	54	10	54
P-0026650-T02-IM6	SOMATIC	ALK	EML4	2	2	29447451	42499245	Intron of ALK(-):875bp after exon 19	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fuses with ALK exons 20-29) : c.667+7374:EML4_c.3172+876:ALKinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ALK:EML4}	13051794	NA	0	21	10	29
P-0026652-T01-IM6	SOMATIC	MIR5093	CD276	16	15	85397630	73995403	IGR: 58Kb before MIR5093(-)	Exon 4 of CD276(+)	GRCh37	TRANSLOCATION	CD276 (NM_001024736) Rearrangement : t(15,16)(q24.1,q24.1)(chr15:g.73995403::chr16:g.85397630)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	10	39
P-0026657-T01-IM6	SOMATIC	ALK	EML4	2	2	29446952	42553363	Intron of ALK(-):558bp before exon 20	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fuses with ALK exons 20-29) : c.2312:EML4_c.3173-558:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13106411	NA	0	231	10	228
P-0026667-T01-IM6	SOMATIC	FRAT1	FGFR4	10	5	99079984	176518004	Exon 1 of FRAT1(+)	Exon 5 of FGFR4(+)	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) - FRAT1 (NM_005479) rearrangement: t(5;10)(q35.2;q24.1)(chr5:g.:176518004::chr10:g.:99079984)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FRAT1:FGFR4}	0	NA	0	17	10	18
P-0024965-T02-IM6	SOMATIC	RBM10	TFE3	X	X	47042472	48895684	Intron of RBM10(+):747bp after exon 17	Intron of TFE3(-):37bp after exon 4	GRCh37	INVERSION	RBM10 (NM_001204468) - TFE3 (NM_006521) fusion (RBM10 exons 1-17 fused to TFE3 exons 5-10): c.2145+747:RBM10_c.780+38:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBM10:TFE3}	1853212	NA	0	22	10	22
P-0026500-T01-IM6	SOMATIC	LOC339568	RAD51B	20	14	37730040	68290336	IGR: 112Kb before LOC339568(-)	Exon 2 of RAD51B(+)	GRCh37	TRANSLOCATION	RAD51B (NM_133509) Rearrangement : t(14,20)(q24.2,q12)(chr14:g.68290336::chr20:g.37730040)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	60	10	65
P-0026544-T01-IM6	SOMATIC	KCTD1	NAB2	18	12	24061792	57488056	Intron of KCTD1(-):5Kb before exon 3	Intron of NAB2(+):338bp before exon 7	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;18)(q13.3;q11.2)(chr12:g.57488056::chr18:g.24061792)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0026673-T01-IM6	SOMATIC	PLXDC1	CDK12	17	17	37297706	37673589	Intron of PLXDC1(-):2Kb before exon 2	Intron of CDK12(+):103bp before exon 10	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: chr17:g.37297706_c.2847-104del	PRECISE		MANUAL_OK	3to5	-	375883	NA	0	11	10	11
P-0026676-T01-IM6	SOMATIC	TMEM117	PIK3R1	12	5	44739711	67522870	Intron of TMEM117(+):31Kb before exon 7	Intron of PIK3R1(+):33bp after exon 2	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) - TMEM117 (NM_032256) rearrangement: t(5;12)(5q13.1;12q12)(chr5:g.67522870::chr12:g.44739711)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PIK3R1:TMEM117}	0	NA	0	6	10	6
P-0026682-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72801772	72827767	IGR: 15Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8814:ZFHX3_chr16:g.72801772del	PRECISE		MANUAL_OK	3to5	-	25995	NA	0	3	10	3
P-0026689-T01-IM6	SOMATIC	LINC00578	TP63	3	3	177279698	189526031	5-UTR of LINC00578(+):191Kb before coding start	Intron of TP63(+):29bp before exon 4	GRCh37	DELETION	TP63 (NM_003722):c.325-30del_g.177279698	PRECISE		MANUAL_OK	3to5	Transcript Fusion {LINC00578:TP63}	12246333	NA	0	36	10	38
P-0026691-T01-IM6	SOMATIC	TCF3	CDKN2Ap14ARF	19	9	1619713	21972496	Intron of TCF3(-):3Kb before exon 6	Intron of CDKN2Ap14ARF(-):1kb before exon 2	GRCh37	TRANSLOCATION	TCF3 (NM_001136139) - CDKN2Ap14ARF (NM_058195) rearrangement:t(9;19)(chr9:g.21972496::chr19:g.1619713)	PRECISE		MANUAL_OK	5to3	-	0	NA	NA	65	10	NA
P-0026691-T01-IM6	SOMATIC	TCF3	CDKN2Ap16INK4A	19	9	1619713	21972496	Intron of TCF3(-):3Kb before exon 6	Intron of CDKN2Ap16INK4A(-):1kb before exon 2	GRCh37	TRANSLOCATION	TCF3 (NM_001136139) - CDKN2Ap16INK4A (NM_000077) rearrangement:t(9;19)(chr9:g.21972496::chr19:g.1619713)	PRECISE		MANUAL_OK	5to3	-	0	NA	NA	65	10	NA
P-0026693-T01-IM6	SOMATIC	KIF5B	RET	10	10	32306824	43610511	Intron of KIF5B(-):155bp after exon 23	Intron of RET(+):327bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion:c.2544+156:KIF5_c.2136+327:RETinv.	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11303687	NA	0	17	10	24
P-0026696-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88657925	12007967	Intron of NTRK3(-):12Kb after exon 13	Intron of ETV6(+):1Kb after exon 4	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20):t(12;15)(p13.2;q25.3)(chr12:g.12007967::chr15:g.88657925)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	19	10	19
P-0026699-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433240	49434396	Exon 32 of KMT2D(-)	Exon 31 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482):c.8207_c.7157inv.	PRECISE		MANUAL_OK	3to3	-	1156	NA	0	4	9	4
P-0026701-T01-IM6	SOMATIC	TP53	TP53	17	17	7574891	7579632	Intron of TP53(-):858bp before exon 10	Intron of TP53(-):42bp before exon 4	GRCh37	DELETION	TP53 (NM_000546):c.97-42_c.994-858del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	4741	NA	0	18	10	83
P-0026528-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21971015	21974957	Exon 2 of CDKN2Ap14ARF(-)	Intron of CDKN2Ap14ARF(-):4kb before exon 2	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.194-3750_c.386del	PRECISE		MANUAL_OK	3to5	-	3942	NA	NA	57	10	NA
P-0026528-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21971015	21974957	Exon 2 of CDKN2Ap16INK4A(-)	131bp before coding start of CDKN2Ap16INK4A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.-131_c.343del	PRECISE		MANUAL_OK	3to5	-	3942	NA	NA	57	10	NA
P-0026654-T03-IM6	SOMATIC	INPP4A	UNC50	2	2	99198208	99227633	Intron of INPP4A(+):5Kb after exon 25	Intron of UNC50(+):275bp after exon 3	GRCh37	DELETION	INPP4A (NM_001134224) - UNC50 (NM_014044) Rearrangement : c.2801+4602:INPP4A_c.401+275:UNC50del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {INPP4A:UNC50}	29425	NA	0	15	10	16
P-0026654-T03-IM6	SOMATIC	EP300	TEF	22	22	41572302	41767198	Exon 30 of EP300(+)	Intron of TEF(+):4Kb after exon 1	GRCh37	DUPLICATION	TEF (NM_001145398) - EP300(NM_001429) Rearrangement :  c.67+3595:TEF_c.4831:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TEF:EP300}	194896	NA	0	7	10	8
P-0026783-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1741351	1808848	Intron of TACC3(+):77bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 with TACC3 exons 11-16) : c.2280:FGFR3_c.1942-78:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67497	NA	0	76	10	82
P-0026800-T01-IM6	SOMATIC	COPG2	NSD1	7	5	130296185	176715881	Intron of COPG2(-):204bp before exon 9	Exon 21 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(5;7)(q35.3;q32.2)(chr5:g.176715881::chr7:g.130296185)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	48	10	51
P-0026801-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72879491	72993346	Intron of ZFHX3(-):16Kb before exon 5	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.699_c.3449-15733del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	113855	NA	0	6	10	6
P-0026804-T01-IM6	SOMATIC	PGR	FBXL7	11	5	100920672	15611089	Exon 6 of PGR(-)	Intron of FBXL7(+):5Kb before exon 2	GRCh37	TRANSLOCATION	FBXL7 (NM_012304) - PGR (NM_000926) rearrangement: t(5;11)(p15.1;q22.1)(chr5:g.15611089::chr11:g.100920672)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FBXL7:PGR}	0	NA	0	7	10	7
P-0026804-T01-IM6	SOMATIC	CD79A	SHMT1	19	17	42383410	18266040	Intron of CD79A(+):51bp after exon 2	5-UTR of SHMT1(-):34Kb before coding start	GRCh37	TRANSLOCATION	SHMT1 (NM_005412) - CD79A (NM_001783) rearrangement: t(17;19)(p11.2;q13.2)(chr17:g.18266040::chr19:g.42383410)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	50	10	55
P-0026806-T01-IM6	SOMATIC	XRN2	PTPRS	20	19	21300045	5256123	Intron of XRN2(+):7Kb before exon 2	Exon 9 of PTPRS(-)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) - XRN2 (NM_012255) rearrangement :t(19;20)(p13.3;p11.22)(chr19:g.5256123::chr20:g.21300045)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTPRS:XRN2}	0	NA	0	90	10	143
P-0026808-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39833349	42873838	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3722:TMPRSS2_c.19-15805:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040489	NA	0	91	10	109
P-0026818-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29684579	51204029	Intron of EWSR1(+):15bp before exon 9	Intron of ATF1(+):657bp after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-8 with ATF1 exons 5-7): t(12;22)(q13.12;q12.2)(chr12:g.51207953)(chr22:g.29694628)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	123	10	133
P-0026710-T01-IM6	SOMATIC	ASXL1	TBCD	20	17	31023295	80876983	Exon 12 of ASXL1(+)	Intron of TBCD(+):1Kb before exon 24	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) - TBCD (NM_005993) rearrangement: t(17;20)(q25.3;q11.21)(chr17:g.80876983::chr20:g.31023295)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ASXL1:TBCD}	0	NA	0	22	10	22
P-0026763-T01-IM6	SOMATIC	ERBB2	LOC101928944	17	11	37871727	81026379	Exon 11 of ERBB2(+)	IGR: 564Kb before LOC101928944(-)	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(11;17)(q14.1;q12)(chr11:g.81026379::chr17:g.37871727)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	42
P-0026768-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39893444	42871129	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-1013:TMPRSS2_c.39+54142:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2977685	NA	0	99	10	104
P-0026768-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151858502	151860043	Intron of KMT2C(-):699bp after exon 43	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11460+700_c.10619del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1541	NA	0	30	10	32
P-0026770-T01-IM6	SOMATIC	SPOP	SPOP	17	17	47696429	47719208	Exon 5 of SPOP(-)	5-UTR of SPOP(-):41Kb before coding start	GRCh37	DUPLICATION	SPOP (NM_001007228) rearrangement: c.394_c.-66-18970dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	22779	NA	0	8	10	13
P-0026770-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15280229	15285353	Intron of NOTCH3(-):667bp after exon 28	Intron of NOTCH3(-):142bp before exon 25	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.5199+668_c.4404-142inv	PRECISE		MANUAL_OK	3to3	-	5124	NA	0	6	10	6
P-0026773-T01-IM6	SOMATIC	SVOPL	BRAF	7	7	138277426	140482097	Promoter of SVOPL(-):2Kb from tx start	Intron of BRAF(-):604bp before exon 11	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1315-604:BRAF_chr7:g.138277426del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {BRAF:SVOPL}	2204671	NA	0	22	10	24
P-0026774-T01-IM6	SOMATIC	EP300	ACO2	22	22	41574694	41872382	Exon 31 of EP300(+)	Intron of ACO2(+):7Kb after exon 1	GRCh37	DUPLICATION	ACO2 (NM_001098) - EP300 (NM_001429) rearrangement: c.36+7196:ACO2_c.6979:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ACO2:EP300}	297688	NA	0	41	10	42
P-0026777-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313518	43610717	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):533bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1726-1554:KIF5B_c.2136+533:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297199	NA	0	48	10	66
P-0026785-T01-IM6	SOMATIC	GATA3	LOC101929234	10	10	8100353	77209520	Exon 3 of GATA3(+)	IGR: 41Kb before LOC101929234(+)	GRCh37	DUPLICATION	GATA3 (NM_002051) Rearrangement : c.327:GATA3_chr10:g.77209520dup	PRECISE		MANUAL_OK	5to3	-	69109167	NA	0	3	7	3
P-0026786-T01-IM6	SOMATIC	TGFBR2	PDE4B	3	1	30664833	66741811	Intron of TGFBR2(+):68bp after exon 2	Intron of PDE4B(+):10Kb after exon 6	GRCh37	TRANSLOCATION	TGFBR2 (NM_001024847) Rearrangement : t(1;3)(q11.2;p23)(chr1:g.66741811::chr3:g.30664833)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	15	10	15
P-0026841-T01-IM6	SOMATIC	LOC101927043	EPCAM	2	2	47489472	47600971	3-UTR of LOC101927043(-):83Kb after coding stop	Exon 3 of EPCAM(+)	GRCh37	DELETION	EPCAM (NM_002354) rearrangement: chr2:g.:47489472_c.209del	PRECISE		MANUAL_OK	3to5	-	111499	NA	0	5	10	6
P-0026847-T01-IM6	SOMATIC	KDM5A	B4GALNT3	12	12	443580	648356	Exon 11 of KDM5A(-)	Intron of B4GALNT3(+):3Kb after exon 3	GRCh37	DELETION	KDM5A (NM_001042603) rearrangement: c.1317_chr12:g.:648356del	PRECISE		MANUAL_OK	3to5	-	204776	NA	0	10	10	10
P-0026849-T01-IM6	SOMATIC	FUBP1	GIPC2	1	1	78432632	78492421	Exon 6 of FUBP1(-)	IGR: 19Kb before GIPC2(+)	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.351_chr1:g.:78492421del	PRECISE		MANUAL_OK	3to5	-	59789	NA	0	7	10	8
P-0026851-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15967902	15976936	Intron of NCOR1(-):281bp after exon 34	Intron of NCOR1(-):53bp before exon 28	GRCh37	DUPLICATION	NCOR1 (NM_006311) rearrangement: c.3671-53_c.5101+282dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : in frame	9034	NA	0	29	10	33
P-0026851-T01-IM6	SOMATIC	MSI2	MSI2	17	17	55693197	55701413	Intron of MSI2(+):133bp before exon 9	Intron of MSI2(+):3Kb before exon 10	GRCh37	DUPLICATION	MSI2 (NM_138962) rearrangement: c.538-134_c.653-3177dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	8216	NA	0	16	10	16
P-0026851-T01-IM6	SOMATIC	KMT2B	U2AF1L4	19	19	36224725	36234495	Exon 30 of KMT2B(+)	Intron of U2AF1L4(-):214bp after exon 5	GRCh37	DUPLICATION	KMT2B (NM_014727) rearrangement: c.7111_chr13:g.36234495dup	PRECISE		MANUAL_OK	5to3	-	9770	NA	0	33	10	80
P-0026712-T01-IM6	SOMATIC	EXOC6B	SF3B1	2	2	72909314	198267723	Intron of EXOC6B(-):36Kb after exon 6	Exon 13 of SF3B1(-)	GRCh37	DELETION	SF3B1 (NM_012433) - EXOC6B (NM_015189) rearrangement: c.1756:SF3B1_c.669+35918:EXOC6Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SF3B1:EXOC6B}	125358409	NA	0	11	10	11
P-0026712-T01-IM6	SOMATIC	ARID5A	SF3B1	2	2	97217562	198285223	Exon 7 of ARID5A(+)	Exon 4 of SF3B1(-)	GRCh37	INVERSION	SF3B1 (NM_012433) - ARID5A (NM_212481) rearrangement: c.344:SF3B1_c.1297:ARID5Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SF3B1:ARID5A}	101067661	NA	0	14	10	23
P-0026712-T01-IM6	SOMATIC	EWSR1	ISX	22	22	29683727	35109644	Intron of EWSR1(+):604bp after exon 8	IGR: 352Kb before ISX(+)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.811+604:EWSR1_chr22:g.35109644del	PRECISE		MANUAL_OK	3to5	-	5425917	NA	0	58	10	66
P-0026731-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16232318	16257091	Intron of SPEN(+):3Kb before exon 4	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) rearrangement: c.882-3498_c.4356dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	24773	NA	0	12	10	51
P-0026731-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16089817	16092633	Intron of NCOR1(-):50bp after exon 3	Intron of NCOR1(-):3Kb before exon 3	GRCh37	DUPLICATION	NCOR1 (NM_006311) rearrangement: c.109-2632_c.242+51dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2816	NA	0	6	0	7
P-0026731-T01-IM6	SOMATIC	SMO	AHCYL2	7	7	128852257	128866358	Exon 12 of SMO(+)	Intron of AHCYL2(+):1Kb after exon 1	GRCh37	DUPLICATION	AHCYL2 (NM_015328) - SMO (NM_005631) rearrangement: c.363+1078:AHCYL2_c.2329:SMOdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AHCYL2:SMO}	14101	NA	0	33	10	34
P-0026854-T01-IM6	SOMATIC	LUZP1	MPL	1	1	23497958	43812452	Promoter of LUZP1(-):87Kb from tx start	Intron of MPL(+):10bp before exon 8	GRCh37	INVERSION	LUZP1 (NM_033631) - MPL (NM_005373) Rearrangement : c.-2991:LUZP1_c.1166-11:MPLinv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {LUZP1:MPL}	20314494	NA	0	25	10	33
P-0026863-T01-IM6	SOMATIC	KDR	PAICS	4	4	55984840	57324588	Exon 3 of KDR(-)	Intron of PAICS(+):949bp before exon 10	GRCh37	INVERSION	PAICS (NM_006452) - KDR (NM_002253) Rearrangement : c.1112-950:PAICS_c.289:KDRinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PAICS:KDR}	1339748	NA	0	5	10	5
P-0024608-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683527	32417807	Intron of EWSR1(+):404bp after exon 8	Exon 7 of WT1(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-8 fused with WT1 exons 7-10) : t(11;22)(p13;q12.2)(chr11:g.32417807::chr22:g.29683527)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:WT1}	0	NA	0	22	10	21
P-0026884-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25454762	25463557	Promoter of DNMT3A(-):1Kb from tx start	Exon 18 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552):c.*2386_c.2125del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8795	NA	0	53	10	56
P-0026964-T01-IM6	SOMATIC	SEC14L1	RPTOR	17	17	75163532	78519470	Intron of SEC14L1(+):23Kb before exon 6	Exon 1 of RPTOR(+)	GRCh37	INVERSION	RPTOR (NM_020761) Rearrangement : c.64-23353:SEC14L1_c.41:RPTORinv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3355938	NA	0	22	10	22
P-0022151-T01-IM6	SOMATIC	DOT1L	ITK	19	5	2193796	156631381	Intron of DOT1L(+):14bp after exon 6	Intron of ITK(+):5Kb before exon 2	GRCh37	TRANSLOCATION	DOT1L (NM_032482) - ITK (NM_005546) rearrangement: t(5;19)(q33.3;p13.3)(chr5:g.156631381::chr19:g.2193796)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DOT1L:ITK}	0	NA	0	22	10	22
P-0022151-T01-IM6	SOMATIC	CTD-2151A2.1	APC	5	5	98951265	112178305	IGR: 82Kb before CTD-2151A2.1(+)	Exon 16 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: chr5:g.98951265_c.7014:APCinv	PRECISE		MANUAL_OK	3to3	-	13227040	NA	0	35	10	35
P-0024549-T03-IM6	SOMATIC	NTRK1	TPR	1	1	156844290	186318704	Intron of NTRK1(+):72bp before exon 10	Intron of TPR(-):650bp after exon 21	GRCh37	INVERSION	TPR (NM_003292) - NTRK1 (NM_002529) fusion: c.2776+651_c.1196-73inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPR:NTRK1}	29474414	NA	0	46	10	70
P-0026482-T02-IM6	SOMATIC	LINC01032	CDC73	1	1	192849355	193117009	IGR: 56Kb before LINC01032(-)	Exon 8 of CDC73(+)	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.742:CDC73_chr1:g.192849355del	PRECISE		MANUAL_OK	3to5	-	267654	NA	0	27	10	28
P-0026482-T02-IM6	SOMATIC	TP53	WRAP53	17	17	7577153	7595665	Exon 8 of TP53(-)	Intron of WRAP53(+):3Kb after exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.785:TP53_chr17:g.7595665del	PRECISE		MANUAL_OK	3to5	-	18512	NA	0	16	10	56
P-0026482-T02-IM6	SOMATIC	SOX9	LINC01099	17	4	70119900	180051570	Exon 3 of SOX9(+)	IGR: 1Mb before LINC01099(-)	GRCh37	TRANSLOCATION	SOX9 (NM_000346) rearrangement: t(4;17)(q34.3;q24.3)(chr4:g.180051570::chr17:g.70119900)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	8
P-0026831-T01-IM6	SOMATIC	RAD51B	ZFP36L1	14	14	69061111	69090674	Intron of RAD51B(+):90bp before exon 11	IGR: 164Kb before ZFP36L1(-)	GRCh37	DELETION	RAD51B (NM_133509) rearrangement: c.1037-91C:RAD51B_chr14:g.69090674del	PRECISE		MANUAL_OK	3to5	-	29563	NA	0	2	10	2
P-0026838-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12001640	12016423	Intron of MAP2K4(+):3Kb after exon 4	Intron of MAP2K4(+):126bp before exon 7	GRCh37	INVERSION	MAP2K4 (NM_003010): c.513+2629_c.686-127inv	PRECISE		MANUAL_OK	5to5	-	14783	NA	0	2	8	5
P-0026914-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55201379	55222445	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):600bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-8600_c.889+600del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	21066	NA	0	95	10	103
P-0026930-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27057611	27099992	Intron of ARID1A(+):31bp before exon 3	Intron of ARID1A(+):5bp after exon 15	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1351-32_c.3866+5dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : out of frame	42381	NA	0	49	10	51
P-0026930-T01-IM6	SOMATIC	ADCY1	CSF1R	7	5	45629335	149452928	Intron of ADCY1(+):3Kb before exon 2	Exon 7 of CSF1R(-)	GRCh37	TRANSLOCATION	ADCY1 (NM_021116) - CSF1R (NM_005211) rearrangement: t(5;7)(q32;p12.3)(chr5:g.149452928::chr7:g.45629335)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ADCY1:CSF1R}	0	NA	0	38	10	38
P-0026937-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38161263	38162769	Intron of WHSC1L1(-):841bp after exon 14	Exon 13 of WHSC1L1(-)	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.2437_c.2611+842deldel	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1506	NA	0	15	10	50
P-0026937-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87476020	87485254	Intron of NTRK2(+):18bp after exon 15	Intron of NTRK2(+):3Kb after exon 16	GRCh37	DUPLICATION	NTRK2 (NM_006180) rearrangement: c.1444+18_c.1633+2908dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	9234	NA	0	47	10	50
P-0026989-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11858920	12017474	Intron of ETV6(+):46Kb before exon 2	Intron of ETV6(+):5Kb before exon 5	GRCh37	DELETION	ETV6 rearrangement: c.34-46464_c.464-4884del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	158554	NA	0	55	10	60
P-0026992-T01-IM6	SOMATIC	EMID1	EWSR1	22	22	29618835	29688116	Intron of EMID1(+):2Kb before exon 4	Intron of EWSR1(+):9bp before exon 11	GRCh37	INVERSION	EMID1 (NM_133455) - EWSR1 (NM_013986) rearrangement: c.320-2287_c.794-10inv.	PRECISE		MANUAL_OK	5to5	-	69281	NA	0	3	10	4
P-0027006-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88512343	12032352	Intron of NTRK3(-):28Kb before exon 15	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12032352::chr15:g.88512343)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	127	10	126
P-0027011-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	11022910	11153127	Exon 5 of CARM1(+)	Intron of SMARCA4(+):891bp after exon 30	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - CARM1 (NM_199141) Rearrangement :  c.4424+891:SMARCA4_c.609:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SMARCA4:CARM1}	130217	NA	0	33	10	34
P-0027038-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487452	57493403	Intron of NAB2(+):71bp after exon 6	Intron of STAT6(-):146bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 16-22):  c.1468+71:NAB2_c.1744+14:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5951	NA	0	24	10	22
P-0027041-T01-IM6	SOMATIC	IRS2	COL4A1	13	13	110437399	110914994	Exon 1 of IRS2(-)	Intron of COL4A1(-):20Kb before exon 2	GRCh37	DUPLICATION	IRS2 (NM_003749) - COL4A1 (NM_001845.4) rearrangement: c.1002_c.85-19913dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IRS2:COL4A1}	477595	NA	0	15	10	15
P-0027047-T01-IM6	SOMATIC	LPCAT3	FGFR1	12	8	7127535	38282317	Promoter of LPCAT3(-):42Kb from tx start	Intron of FGFR1(-):100bp before exon 8	GRCh37	TRANSLOCATION	LPCAT3 (NM_005768.5) - FGFR1(NM_001174067) rearrangement: t(8;12)(p11.23;p13.31)(chr8:g.38282317::chr12:g.7127535)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {LPCAT3:FGFR1}	0	NA	0	29	10	42
P-0027047-T01-IM6	SOMATIC	PRDM1	PRDM1	6	6	106553457	106555034	Exon 5 of PRDM1(+)	Exon 7 of PRDM1(+)	GRCh37	DELETION	PRDM1 (NM_001198) rearrangement: c.1422_c.2151del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1577	NA	0	119	10	129
P-0027047-T01-IM6	SOMATIC	PRDM14	PRDM14	8	8	70978587	70986084	Exon 5 of PRDM14(-)	Promoter of PRDM14(-):22Kb from tx start	GRCh37	INVERSION	PRDM14 (NM_024504) rearrangement: c.1066_c.-2724inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7497	NA	0	99	10	125
P-0027008-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2B	9	9	21982023	22006091	Intron of CDKN2Ap14ARF(-):11Kb before exon 2	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) - CDKN2Ap14ARF (NM_058195) rearrangement: c.312:CDKN2B_c.194-10816:CDKN2Ap14ARFdel	PRECISE		MANUAL_OK	3to5	-	24068	NA	NA	24	10	NA
P-0009689-T01-IM5	SOMATIC	PPM1D	BCAS3	17	17	58678140	59199266	Exon 1 of PPM1D(+)	Intron of BCAS3(+): 37Kb after exon 22	GRCh37	DELETION	PPM1D (NM_003620) - BCAS3 (NM_001099432) rearrangement: c.365:PPM1D_c.2470+37341:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (PPM1D-BCAS3)	521126	NA	0	22	70	13
P-0010689-T01-IM5	SOMATIC	PBRM1	PBRM1	3	3	52618277	52649455	Intron of PBRM1(-): 2Kb after exon 21	Exon 16 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.1836_c.3312+2164dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	31178	NA	0	39	51	37
P-0011147-T01-IM5	SOMATIC	CUL1	EZH2	7	7	148460625	148506176	Intron of CUL1(+): 3Kb before exon 8	Exon 19 of EZH2(-)	GRCh37	DELETION	CUL1 (NM_003592) - EZH2 (NM_004456) rearrangement : c.790-3028:CUL1_c.2182:EZH2del	PRECISE		MANUAL_OK	3to5	Antisense fusion	45551	NA	0	58	61	56
P-0018197-T01-IM6	SOMATIC	DUSP26	FGFR1	8	8	33895943	38274836	IGR: 447Kb before DUSP26(-)	Exon 13 of FGFR1(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement : g.33895943_c.1744:FGFR1inv	PRECISE		MANUAL_OK	5to5	-	4378893	NA	0	4	10	9
P-0024119-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39992544	42871213	3-UTR of ERG(-):41Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1097:TMPRSS2_chr21:g.39992544del	PRECISE		MANUAL_OK	3to5	-	2878669	NA	0	15	10	15
P-0002731-T03-IM6	SOMATIC	AXL	AXL	19	19	41754586	41757140	Intron of AXL(+):61bp before exon 14	Intron of AXL(+):1Kb before exon 15	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.1634-62_c.1712-1116del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2554	NA	0	25	10	27
P-0002731-T03-IM6	SOMATIC	APC	APC	5	5	112156209	112163644	Intron of APC(+):1Kb after exon 10	Exon 13 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1312+1168_c.1567del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7435	NA	0	12	10	13
P-0017386-T02-IM6	SOMATIC	STK40	EMBP1	1	1	36809046	121485036	Exon 11 of STK40(-)	IGR: 224Kb before EMBP1(+)	GRCh37	DELETION	STK40 (NM_032017) rearrangement: chr1:g.121485036_c.1008del	PRECISE		MANUAL_OK	3to5	-	84675990	NA	0	4	10	22
P-0017386-T02-IM6	SOMATIC	MGA	MGA	15	15	41999903	42016392	Intron of MGA(+):22bp before exon 6	Intron of MGA(+):3Kb before exon 10	GRCh37	DUPLICATION	MGA (NM_001164273) rearrangement: c.2189-23_c.3431-2986dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	16489	NA	0	42	10	43
P-0022456-T03-IM6	SOMATIC	FGFR1	SP3	8	2	38276953	174604210	Intron of FGFR1(-):97bp after exon 10	IGR: 167Kb before SP3(-)	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067)  rearrangement: t(2;8)(q31.1;p11.23) (chr2:g.174604210::chr8:g.38276953)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	41	10	42
P-0026974-T01-IM6	SOMATIC	FUBP1	DDAH1	1	1	78422188	85991712	Intron of FUBP1(-):68bp after exon 17	5-UTR of DDAH1(-):205Kb before coding start	GRCh37	INVERSION	FUBP1 (NM_003902) rearrangement: c.1705+69:FUBP1_chr1:g.85991712inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7569524	NA	0	4	8	4
P-0027021-T01-IM6	SOMATIC	PSMB8	TAP1	6	6	32809592	32814846	Intron of PSMB8(-):80bp before exon 5	Exon 10 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) - PSMB8 (NM_148919) Rearrangement (TAP1 exon10 with PSMB8 exon5 ) : c.2219:TAP1_c.538-80:PSMB8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TAP1:PSMB8}	5254	NA	0	12	10	11
P-0027023-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55111912	55223160	Intron of EGFR(+):25Kb after exon 1	Intron of EGFR(+):362bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+24854_c.890-363del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	111248	NA	0	58	10	66
P-0027023-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268522	55270368	Intron of EGFR(+):358bp before exon 25	Intron of EGFR(+):50bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-359_c.3271+50del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1846	NA	0	37	10	53
P-0027072-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	11031432	11127230	Intron of CARM1(+):8bp after exon 12	Intron of SMARCA4(+):2Kb before exon 17	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - CARM1 (NM_199141) rearrangement: c.2439-2403:SMARCA4_c.1424+8:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SMARCA4:CARM1}	95798	NA	0	40	10	42
P-0027073-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39850702	42873840	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3724:TMPRSS2_c.18+19585:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3023138	NA	0	7	10	8
P-0027079-T01-IM6	SOMATIC	OR10A5	CUL3	11	2	6857883	225378244	IGR: 9Kb before OR10A5(+)	Exon 5 of CUL3(-)	GRCh37	TRANSLOCATION	CUL3 (NM_003590) rearrangement: t(2;11)(q36.2;p15.4)(chr2:g.225378244::chr11:g.6857883)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	10	37
P-0027081-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3822823	3832632	Intron of CREBBP(-):928bp after exon 13	Intron of CREBBP(-):52bp after exon 6	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.1573+53_c.2463+929inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	9809	NA	0	3	10	10
P-0027081-T01-IM6	SOMATIC	BRCA1	NBR2	17	17	41243972	41287037	Exon 10 of BRCA1(-)	5-UTR of NBR2(+):10Kb before coding start	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.3576_chr17:g.41287037del	PRECISE		MANUAL_OK	3to5	-	43065	NA	0	18	10	19
P-0027082-T01-IM6	SOMATIC	RNU6-33P	KMT2C	7	7	150053665	151845621	IGR: 10Kb before RNU6-33P(+)	Exon 52 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: chr7:g.150053665_c.13391:KMT2Cdel	PRECISE		MANUAL_OK	3to5	-	1791956	NA	0	37	10	38
P-0027086-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148458308	148544286	Intron of CUL1(+):720bp after exon 7	Exon 2 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.105:EZH2_chr7:g.148458308del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	85978	NA	0	5	10	5
P-0027092-T01-IM6	SOMATIC	ALK	PLEKHH2	2	2	29446506	43922908	Intron of ALK(-):112bp before exon 20	Intron of PLEKHH2(+):545bp after exon 6	GRCh37	INVERSION	PLEKHH2 (NM_172069) - ALK (NM_004304) rearrangement: c.502+545: PLEKHH2_c.3173-112:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PLEKHH2:ALK}	14476402	NA	0	55	10	54
P-0027094-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268386	55270804	Intron of EGFR(+):280bp after exon 24	Intron of EGFR(+):486bp after exon 27	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2946+280_c.3271+486inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2418	NA	0	8	10	8
P-0027098-T01-IM6	SOMATIC	KMT2B	PRIM2	19	6	36214642	57161995	Exon 8 of KMT2B(+)	IGR: 18Kb before PRIM2(+)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(6;19)(p11.2;q13.12)(chr6:g.57161995::chr19:g.36214642)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	28
P-0027099-T01-IM6	SOMATIC	TFE3	SFPQ	X	1	48895799	35652179	Exon 4 of TFE3(-)	Intron of SFPQ(-):422bp after exon 9	GRCh37	TRANSLOCATION	SFPQ (NM_005066) - TFE3 (NM_006521) fusion (SFPQ exons 1-10 with TFE3 exons 4-10): t(1;X)(p34.3;p11.23)(chr1:g.35652179::chrX:g.48895799)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SFPQ:TFE3}	0	NA	0	57	10	57
P-0027106-T01-IM6	SOMATIC	ERBB2	RASSF5	17	1	37880133	206712224	Intron of ERBB2(+):31bp before exon 19	Intron of RASSF5(+):602bp after exon 2	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(1;17)(q32.1;q12)(chr1:g.206712224::chr17:g.37880133)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	10	42
P-0027119-T01-IM6	SOMATIC	ALK	EML4	2	2	29446711	42527544	Intron of ALK(-):317bp before exon 20	Intron of EML4(+):836bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-12 fused to ALK exons 20-29): c.1490-837:EML4_c.3173-317:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080833	NA	0	38	10	38
P-0027128-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226500	2228059	Exon 27 of DOT1L(+)	Intron of DOT1L(+):933bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.3980_c.4606+933inv	PRECISE		MANUAL_OK	5to5	-	1559	NA	0	2	8	2
P-0027134-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39887436	42874530	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement:c.56-4414:TMPRSS2_c.39+60150:ERGinv	PRECISE		MANUAL_OK	3to3	-	2987094	NA	0	64	10	59
P-0027135-T01-IM6	SOMATIC	TP53	TP53	17	17	7575486	7578248	Intron of TP53(-):1Kb after exon 9	Exon 6 of TP53(-)	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.993+1367_c.601dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2762	NA	0	21	10	42
P-0027141-T01-IM6	SOMATIC	SOX9	AGPAT9	17	4	70120234	84464806	Exon 3 of SOX9(+)	Intron of AGPAT9(+):882bp before exon 2	GRCh37	TRANSLOCATION	SOX9 (NM_000346) rearrangement: t(4;17)(q21.23;q24.3)(chr4:g.84464806::chr17:g.70120234)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	173	10	411
P-0027161-T01-IM6	SOMATIC	EIF3H	RAD21	8	8	117769470	117875419	Promoter of EIF3H(-):112Kb from tx start	Exon 3 of RAD21(-)	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.224_g.117769470del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RAD21:EIF3H}	105949	NA	0	20	10	21
P-0026677-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29686620	51199267	Intron of EWSR1(+):933bp before exon 10	Intron of ATF1(+):4Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-9 fused in-frame to ATF1 exons 4-7): t(12;22)(12q13.12;22q12.2)(chr12:g.51199267::chr22:g.29686620)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	39	10	38
P-0027028-T01-IM6	SOMATIC	GZMB	MAX	14	14	25176242	65550998	IGR: 76Kb before GZMB(-)	Intron of MAX(-):6Kb before exon 4	GRCh37	DUPLICATION	MAX (NM_002382) rearrangement: chr14:g.:25176242_c.172-6244dup	PRECISE		MANUAL_OK	5to3	-	40374756	NA	0	12	10	12
P-0027031-T01-IM6	SOMATIC	PBRM1	CRYBG3	3	3	52588805	97629410	Exon 27 of PBRM1(-)	Intron of CRYBG3(+):2Kb before exon 16	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.4223_chr3:g.97629410dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	45040605	NA	0	12	10	17
P-0026432-T02-IM6	SOMATIC	NCOA3	ESR1	20	6	46267764	152235440	Exon 14 of NCOA3(+)	Intron of ESR1(+):30Kb before exon 5	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) - NCOA3 (NM_181659) rearrangement: t(6;20)(q25.1;q13.12)(chr6:g.152235440::chr20:g.46267764)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ESR1:NCOA3}	0	NA	0	13	10	13
P-0026830-T02-IM6	SOMATIC	POLE	CLIC5	12	6	133253101	46045382	Intron of POLE(-):30bp after exon 9	Intron of CLIC5(-):2Kb after exon 1	GRCh37	TRANSLOCATION	POLE (NM_006231) - CLIC5 (NM_001114086) rearrangement: t(6;12)(p21.2;q24.33)(chr6:g.46045382::chr12:g.133253101)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {POLE:CLIC5}	0	NA	0	5	8	5
P-0026969-T01-IM6	SOMATIC	DTNB	ASXL2	2	2	25848910	25972720	Intron of DTNB(-):2Kb after exon 4	Exon 11 of ASXL2(-)	GRCh37	DUPLICATION	DTNB (NM_021907) - ASXL2 (NM_018263) rearrangement: c.362+2130:DTNB_c.1705:ASLX2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DTNB:ASXL2}	123810	NA	0	14	10	14
P-0027193-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37543831	37682127	Intron of FBXL20(-):14Kb after exon 1	Exon 13 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: chr17:g.37543831_c.3318:CDK12del	PRECISE		MANUAL_OK	3to5	-	138296	NA	1	25	10	25
P-0027196-T01-IM6	SOMATIC	ROS1	CD74	6	5	117650377	149782321	Intron of ROS1(-):114bp after exon 32	Intron of CD74(-):133bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-7 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149782321::chr6:g.117650377)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	41	10	40
P-0027203-T01-IM6	SOMATIC	PLCD3	MAP3K14	17	17	43203028	43351967	Intron of PLCD3(-):4Kb before exon 2	Intron of MAP3K14(-):7bp before exon 7	GRCh37	DUPLICATION	PLCD3 (NM_133373) - MAP3K14 (NM_003954) rearrangement: c.164-4289_c.1290-7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PLCD3:MAP3K14}	148939	NA	0	10	10	10
P-0027203-T01-IM6	SOMATIC	RPS19	CD79A	19	19	42371347	42383177	Intron of RPS19(+):2Kb before exon 4	Exon 2 of CD79A(+)	GRCh37	DUPLICATION	CD79A (NM_001783) - RPS19 (NM_001022) rearrangement: c.197_c.173-1754dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CD79A:RPS19}	11830	NA	0	3	10	3
P-0027210-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39896378	42870803	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):687bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-687:TMPRSS2_c.39+51208:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2974425	NA	0	69	10	74
P-0027211-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739166	1808735	Intron of TACC3(+):111bp after exon 9	Intron of FGFR3(+):74bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 10-16): c.2274+74:FGFR3_c.1836+111:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69569	NA	0	62	10	70
P-0027269-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8522391	8523590	Intron of PTPRD(-):845bp before exon 20	Intron of PTPRD(-):66bp before exon 19	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.692-845_c.680-66dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	1199	NA	0	23	10	24
P-0027272-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39843558	42872586	Intron of ERG(-):26Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2470_c.19-26014del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3029028	NA	0	6	5	6
P-0027277-T01-IM6	SOMATIC	NTRK1	PEAR1	1	1	156844219	156881001	Intron of NTRK1(+):27bp after exon 9	Intron of PEAR1(+):466bp after exon 15	GRCh37	DUPLICATION	PEAR1 (NM_001080471) - NTRK1 (NM_002529) fusion (PEAR1 exons 1-15 fused to NTRK1 exons 9-17): c.1951+466:PEAR1_c.1195+27:NTRK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PEAR1:NTRK1}	36782	NA	0	122	10	160
P-0027278-T01-IM6	SOMATIC	NTRK1	KIF21B	1	1	156843723	200966911	Exon 8 of NTRK1(+)	Intron of KIF21B(-):600bp after exon 14	GRCh37	INVERSION	KIF21B (NM_001252100) - NTRK1 (NM_002529) rearrangement: c.2077+601:KIF21B_c.1149:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF21B:NTRK1}	44123188	NA	0	36	10	59
P-0027284-T01-IM6	SOMATIC	ZFHX3	BRINP1	16	9	72822652	121452432	Exon 10 of ZFHX3(-)	IGR: 476Kb before BRINP1(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(9;16)(q33.1;q22.2)(chr9:g.121452432::chr16:g.72822652)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0027288-T01-IM6	SOMATIC	MBD3	TCF3	19	19	1593723	1621036	Promoter of MBD3(-):17Kb from tx start	Exon 12 of TCF3(-)	GRCh37	DUPLICATION	TCF3 (NM_001136139) rearrangement: chr19:g.1593723_c.1024dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MBD3:TCF3}	27313	NA	0	10	10	10
P-0026370-T02-IM6	SOMATIC	ZNF621	CTNNB1	3	3	40674718	41268753	IGR: 108Kb before ZNF621(+)	Exon 7 of CTNNB1(+)	GRCh37	DUPLICATION	CTNNB1 (NM_001904) rearrangement: c.991:CTNNB1_chr3:g.40674718dup	PRECISE		MANUAL_OK	5to3	-	594035	NA	0	27	10	29
P-0027185-T01-IM6	SOMATIC	GNAQ	GNAQ	9	9	80320467	80336265	IGR: 11Kb before GNAQ(-)	Exon 7 of GNAQ(-)	GRCh37	INVERSION	GNAQ (NM_002072) rearrangement: c.1054:GNAQ_chr9:g.80320467del	PRECISE		MANUAL_OK	5to5	-	15798	NA	0	15	10	21
P-0027293-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39894658	42870542	Intron of ERG(-):53Kb after exon 3	Intron of TMPRSS2(-):426bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-426:TMPRSS2_c.39+52928:ERGinv	PRECISE		MANUAL_OK	3to3	-	2975884	NA	0	19	10	18
P-0027300-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11169532	11228610	Exon 32 of SMARCA4(+)	Intron of LDLR(+):936bp after exon 12	GRCh37	DUPLICATION	LDLR (NM_000527) - SMARCA4 (NM_003072) rearrangement: c.1845+936:LDLR_c.4602:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LDLR:SMARCA4}	59078	NA	0	2	9	2
P-0027305-T01-IM6	SOMATIC	CCDC6	FGFR2	10	10	61585857	123241542	Intron of CCDC6(-):6Kb after exon 3	Intron of FGFR2(-):2Kb after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - CCDC6 (NM_005436) fusion (FGFR2 exons 1-17 fused to CCDC6 exons 4-9): c.2301+1670:FGFR2_c.582+6426:CCDC6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:CCDC6}	61655685	NA	0	3	10	3
P-0027307-T01-IM6	SOMATIC	GNAS	LRP1B	20	2	57466801	142349760	Exon 1 of GNAS(+)	Intron of LRP1B(-):112Kb before exon 3	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(2;20)(q22.2;q13.32)(chr2:g.142349760::chr20:g.57466801)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0027307-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162622284	162644833	Exon 4 of PARK2(-)	Intron of PARK2(-):23Kb before exon 4	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.413-22549_c.413del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22549	NA	0	4	10	4
P-0027311-T01-IM6	SOMATIC	ETV6	RNU6-19P	12	12	12037111	12056304	Intron of ETV6(+):267bp before exon 6	3-UTR of RNU6-19P(-):23Kb after coding stop	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-268:ETV6_chr12:g.12056304del	PRECISE		MANUAL_OK	3to5	-	19193	NA	0	21	10	22
P-0027315-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683669	32415545	Intron of EWSR1(+):546bp after exon 8	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:32415545::chr22:29683669)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	135	10	133
P-0027315-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52620783	52621578	Intron of PBRM1(-):79bp before exon 21	Intron of PBRM1(-):127bp before exon 20	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.2966-127_c.3049-79del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	795	NA	2	2	10	1
P-0027321-T01-IM6	SOMATIC	TERT	KCTD8	5	4	1295406	44149829	Promoter of TERT(-):42Kb from tx start	IGR: 26Kb before KCTD8(-)	GRCh37	TRANSLOCATION	TERT (NM_198253)  rearrangement: t(4;5)(p13;p15.33)(chr4:g.44149829::chr5:g.1295406)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0027321-T02-IM6	SOMATIC	TERT	KCTD8	5	4	1295406	44149829	Promoter of TERT(-):42Kb from tx start	IGR: 26Kb before KCTD8(-)	GRCh37	TRANSLOCATION	TERT (NM_198253)  rearrangement: t(4;5)(p13;p15.33)(chr4:g.44149829::chr5:g.1295406)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0027248-T01-IM6	SOMATIC	SHOC2	PKN2-AS1	10	1	112771314	88591998	Intron of SHOC2(+):53bp before exon 9	IGR: 411Kb before PKN2-AS1(-)	GRCh37	TRANSLOCATION	SHOC2 (NM_007373) rearrangement: t(1;10)(p22.3;q25.2)(chr1:g.88591998::chr10:g.112771314)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	23	0	23
P-0027248-T01-IM6	SOMATIC	CACNA1I	CDK8	22	13	40049444	26911809	Intron of CACNA1I(+):4Kb after exon 10	Intron of CDK8(+):30bp after exon 2	GRCh37	TRANSLOCATION	CDK8 (NM_001260)  - CACNA1I (NM_001003406) rearrangement: t(12;22)(q12.13;q13.1)(chr13:g.26911809::chr22:g.40049444)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CDK8:CACNA1I}	0	NA	0	9	10	9
P-0027251-T01-IM6	SOMATIC	NKX2-1	NKX2-8	14	14	36987236	37047558	Intron of NKX2-1(-):11bp before exon 3	Promoter of NKX2-8(-):2Kb from tx start	GRCh37	DELETION	NKX2-1 (NM_001079668) rearrangement: c.464-11:NKX2-1_chr14:g.37047558del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NKX2-8:NKX2-1}	60322	NA	0	135	10	181
P-0027350-T01-IM6	SOMATIC	FARP1	KMT2D	13	12	98788781	49433473	IGR: 6Kb before FARP1(+)	Intron of KMT2D(-):33bp after exon 31	GRCh37	TRANSLOCATION	KMT2D (NM_003482.3) rearrangement: t(12;13)(q13.12;q32.2)(chr12:g.49433473::chr13:g.98788781)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	48	10	51
P-0027352-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263666	41266539	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-1846_c.336del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2873	NA	0	37	10	40
P-0027353-T01-IM6	SOMATIC	MUTYH	NBPF20	1	1	45799091	144950020	Exon 3 of MUTYH(-)	Intron of NBPF20(+):125Kb after exon 53	GRCh37	DELETION	MUTYH (NM_001128425) rearrangement: c.342:MUTYH_g.144950020del	PRECISE		MANUAL_OK	3to5	-	99150929	NA	0	9	10	26
P-0005163-T02-IM6	SOMATIC	TAMM41	RAF1	3	3	11863558	12650943	Intron of TAMM41(-):5Kb before exon 5	Intron of RAF1(-):109bp before exon 4	GRCh37	DUPLICATION	TAMM41 (NM_138807) - RAF (NM_002880) rearrangement: c.563-4747:TAMM41_c.321-109:RAF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TAMM41:RAF1}	787385	NA	0	3	3	3
P-0020825-T03-IM6	SOMATIC	ALK	EML4	2	2	29446767	42477717	Intron of ALK(-):373bp before exon 20	Intron of EML4(+):5Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-2 fused to ALK exons 20-29):c.208+4890:EML4_c.3173-373:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13030950	NA	0	23	10	23
P-0027216-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845441	42871641	Intron of TMPRSS2(-):18bp before exon 9	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-1525_c.839-18del	PRECISE		MANUAL_OK	5to5	Antisense Fusion	26200	NA	0	25	10	35
P-0027225-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55091830	55221842	Intron of EGFR(+):5Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion: c.88+4772_c.886del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	130012	NA	0	60	0	425
P-0027225-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268658	55269473	Intron of EGFR(+):222bp before exon 25	Exon 26 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-223_c.3160del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	815	NA	1	34	10	266
P-0027226-T01-IM6	SOMATIC	FLJ37453	SPEN	1	1	16148632	16257937	IGR: 12Kb before FLJ37453(-)	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.5202:SPEN_chr1:g.16148632del	PRECISE		MANUAL_OK	3to5	-	109305	NA	0	7	10	7
P-0027391-T01-IM6	SOMATIC	AXL	GDF10	19	10	41762374	48490590	Exon 18 of AXL(+)	IGR: 65Kb before GDF10(-)	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(10;19)(q11.22;q13.2)(chr10:g.48490590::chr19:g.41762374)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	6
P-0027395-T01-IM6	SOMATIC	C1orf234	SESN2	1	1	23343226	28599205	Promoter of C1orf234(-):6Kb from tx start	Exon 5 of SESN2(+)	GRCh37	DUPLICATION	SESN2 (NM_031459) rearrangement: chr1:g.23343226_c.651dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	5255979	NA	0	39	10	40
P-0027075-T01-IM6	SOMATIC	NKX1-1	FGFR3	4	4	1504892	1806185	IGR: 108Kb before NKX1-1(-)	Exon 9 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) rearrangement:  chr4:g.1504892_c.1204:FGFR3dup	PRECISE		MANUAL_OK	5to3	-	301293	NA	0	50	10	49
P-0027313-T01-IM6	SOMATIC	GLIS1	JAK1	1	1	54094331	65305384	5-UTR of GLIS1(-):122Kb before coding start	Exon 20 of JAK1(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.2744:JAK1_chr1:g.54094331del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {JAK1:GLIS1}	11211053	NA	0	65	10	68
P-0016507-T03-IM6	SOMATIC	NTRK3	ETV6	15	12	88488820	12023709	Intron of NTRK3(-):5Kb before exon 15	Intron of ETV6(+):806bp after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused with NTRK3 exons 15-20: t(12;15)(p13.2;q25.3)(chr12:g.12023709::chr15:g.88488820)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	132	10	130
P-0016507-T03-IM6	SOMATIC	CDK12	STAT5B	17	17	37672113	40354107	Intron of CDK12(+):52bp after exon 9	Intron of STAT5B(-):225bp before exon 19	GRCh37	DELETION	CDK12 (NM_016507) - STAT5B (NM_012448) rearrangement: c.2846+52:CDK12_c.2238-225:STAT5Bdel.	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2681994	NA	0	31	10	33
P-0027243-T01-IM6	SOMATIC	SMAD3	HTR1F	15	3	67358678	87782240	Exon 1 of SMAD3(+)	IGR: 249Kb before HTR1F(+)	GRCh37	TRANSLOCATION	SMAD3 (NM_005902) rearrangement: t(3;15)(p11.2;q22.31)(chr3:g.87782240::chr15:g.67358678)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	18
P-0027243-T01-IM6	SOMATIC	ABL1	NUP214	9	9	133750428	134078082	Exon 7 of ABL1(+)	Intron of NUP214(+):978bp after exon 30	GRCh37	DUPLICATION	NUP214 (NM_005085) - ABL1(NM_005157) rearrangement: c.1259:ABL1_c.5592+978:NUP214dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NUP214:ABL1}	327654	NA	0	8	10	8
P-0027245-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868705	42872225	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2109:TMPRSS2_c.18+1582:ERGinv	PRECISE		MANUAL_OK	3to3	-	3003520	NA	0	22	10	22
P-0027247-T01-IM6	SOMATIC	ASIC2	RNF43	17	17	32202503	56434832	Intron of ASIC2(-):280Kb after exon 1	Exon 9 of RNF43(-)	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.2305:RNF43_g.32202503dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ASIC2:RNF43}	24232329	NA	0	41	10	43
P-0027247-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39920851	39922209	Intron of BCOR(-):540bp after exon 10	Exon 9 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.4428+541_c.3963del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1358	NA	0	33	10	33
P-0027377-T01-IM6	SOMATIC	EWSR1	AVIL	22	12	29689684	58197438	Intron of EWSR1(+):1Kb after exon 12	Exon 14 of AVIL(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - AVIL (NM_006576) rearrangement: t(12,22)(q12.2,q13.3)(chr12:g.58197438::chr22:g.29689684)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:AVIL}	0	NA	0	17	10	15
P-0027440-T01-IM6	SOMATIC	MITF	MITF	3	3	69988420	70003498	Intron of MITF(+):88bp after exon 4	Intron of MITF(+):2Kb before exon 8	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.666+88_c.938-2108inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15078	NA	0	18	10	16
P-0027453-T01-IM6	SOMATIC	TMPRSS2	LINC01538	21	18	42860348	62539742	Exon 5 of TMPRSS2(-)	IGR: 659Kb before LINC01538(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(18;21)(q22.1;q22.3)(chr18:g.62539742::chr21:g.42860348)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	45	10	62
P-0027453-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39890597	42872283	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2167:TMPRSS2_c.39+56989:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2981686	NA	0	46	10	96
P-0027454-T01-IM6	SOMATIC	TMPRSS2	PABPN1	21	14	42869346	23791333	Intron of TMPRSS2(-):699bp after exon 2	Intron of PABPN1(+):56bp before exon 2	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(14;21)(q11.2;q22.3)(chr14:g.23791333::chr21:g.42869346)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0027454-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861313	42869338	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):707bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.126+708:TMPRSS2_c.18+8974:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3008025	NA	0	21	10	23
P-0027489-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21562867	21614724	Exon 4 of LATS2(-)	Intron of LATS2(-):5Kb after exon 2	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.1052_c.342+5100del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	51857	NA	0	73	10	79
P-0015951-T02-IM6	SOMATIC	CA8	IRS1	8	2	61053369	227663411	IGR: 48Kb before CA8(-)	Exon 1 of IRS1(-)	GRCh37	TRANSLOCATION	IRS1 (NM_005544) Rearrangement : t(2,8)(q36.2,q12.1)(chr2:g.227663411::chr8:g.61053369)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	19
P-0024546-T01-IM6	SOMATIC	MYOD1	MYOD1	11	11	17737403	17741393	IGR: 4Kb before MYOD1(+)	Exon 1 of MYOD1(+)	GRCh37	DELETION	MYOD1 (NM_002478): c.64:MYOD1_chr11:g.17737403del	PRECISE		MANUAL_OK	3to5	-	3990	NA	0	64	10	66
P-0024797-T01-IM6	SOMATIC	TBK1	SPEN	12	1	64915315	16261055	IGR: 69Kb before TBK1(+)	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;12)(p36.13;q14.2)(chr1:g.16261055::chr12:g.64915315)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	10	32
P-0025688-T01-IM6	SOMATIC	SGK1	ARID1A	6	1	134562414	27106417	Intron of SGK1(-):21Kb after exon 2	Exon 20 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) - SGK1 (NM_001143676) rearrangement: t(1;6)(p36.11;q23.2)(chr1:g.1:27106417::chr6:g.134562414)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1A:SGK1}	0	NA	0	10	10	10
P-0027386-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21970912	21973518	Exon 2 of CDKN2Ap14ARF(-)	Intron of CDKN2Ap14ARF(-):2kb before exon 2	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195.3) rearrangement: c.*90_c.194-2311del	PRECISE		MANUAL_OK	3to5	-	2606	NA	NA	48	10	NA
P-0027386-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21970912	21973518	Exon 2 of CDKN2Ap16INK4A(-)	1159bp after exon 1 of CDKN2Ap16INK4A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.446_c.150+1159del	PRECISE		MANUAL_OK	3to5	-	2606	NA	NA	48	10	NA
P-0027448-T01-IM6	SOMATIC	RECQL4	ARHGAP39	8	8	145737590	145780761	Exon 19 of RECQL4(-)	Intron of ARHGAP39(-):182bp after exon 5	GRCh37	DELETION	ARHGAP39 (NM_025251) - RECQL4 (NM_004260) rearrangement: c.596+183:ARHGAP39_c.3173:RECQL4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARHGAP39:RECQL4}	43171	NA	0	6	10	6
P-0027456-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41273588	41277250	Intron of CTNNB1(+):1Kb before exon 8	Exon 11 of CTNNB1(+)	GRCh37	DUPLICATION	CTNNB1 (NM_001904) rearrangement: c.1082-1244_c.1719dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3662	NA	0	17	10	17
P-0027456-T01-IM6	SOMATIC	POTEA	MSH6	8	2	43096828	48030834	IGR: 51Kb before POTEA(+)	Intron of MSH6(+):10bp after exon 5	GRCh37	TRANSLOCATION	MSH6 (NM_000179) rearrangement: t(2;8)(p16.3;p11.21)(chr2:g.48030834::chr8:g.43096828)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	11	0	10
P-0027504-T01-IM6	SOMATIC	HMGXB3	FLT4	5	5	149399788	180040119	Intron of HMGXB3(+):2Kb after exon 6	Intron of FLT4(-):9bp before exon 25	GRCh37	INVERSION	HMGXB3 (NM_014983) - FLT4 (NM_182925) rearrangement: c.1041+1528:HMGXB3_c.3332-9:FLT4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HMGXB3:FLT4}	30640331	NA	0	82	10	80
P-0018403-T03-IM6	SOMATIC	NF1	NF1	17	17	29519550	29661735	Intron of NF1(+):8Kb before exon 9	Intron of NF1(+):120bp before exon 40	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.889-7890_c.5813-121del	PRECISE		MANUAL_OK	3to5	Deletion of 31 exons : out of frame	142185	NA	0	12	10	12
P-0018403-T03-IM6	SOMATIC	DOT1L	KDM4B	19	19	2213948	5047238	Exon 18 of DOT1L(+)	Intron of KDM4B(+):248bp before exon 6	GRCh37	DELETION	DOT1L (NM_032482) - KDM4B (NM_015015) rearrangement: c.1760:DOT1L_c.433-249:KDM4Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DOT1L:KDM4B}	2833290	NA	0	6	10	9
P-0027417-T01-IM6	SOMATIC	RET	KCNMA1	10	10	43608158	79381396	Intron of RET(+):142bp before exon 9	Intron of KCNMA1(-):16Kb after exon 1	GRCh37	INVERSION	KCNMA1 (NM_001161352) -  RET (NM_020975) rearrangement: c.378+15627:KCNMA1_c.1649-143:RET	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KCNMA1:RET}	35773238	NA	0	44	10	68
P-0027526-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878354	42869752	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):293bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449.4) fusion (TMPRSS2 exon 1-2 with ERG exons 4-10) : c.126+294:TMPRSS2_c.40-60810:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991398	NA	0	39	10	41
P-0027530-T01-IM6	SOMATIC	KDR	KIAA1211	4	4	55971185	57171503	Intron of KDR(-):34bp before exon 13	Intron of KIAA1211(+):2Kb before exon 5	GRCh37	DELETION	KDR  (NM_002253) rearrangement: c.1646-34:KDR_chr4:g.57171503del.	PRECISE		MANUAL_OK	3to5	-	1200318	NA	0	6	10	6
P-0027542-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27037782	27099918	Intron of ARID1A(+):14Kb after exon 1	Exon 15 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1137+13751_c.3797dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	62136	NA	0	12	10	12
P-0027542-T01-IM6	SOMATIC	SLC17A3	HIST1H1C	6	6	25862687	26056147	Intron of SLC17A3(-):15bp before exon 3	Exon 1 of HIST1H1C(-)	GRCh37	DUPLICATION	SLC17A3 (NM_001098486) - HIST1H1C (NM_005319) rearrangement: c.92-15:SLC17A3_c.510:HIST1H1Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC17A3:HIST1H1C}	193460	NA	0	12	10	12
P-0027548-T01-IM6	SOMATIC	CIC	CIC	19	19	42794270	42795072	Intron of CIC(+):114bp before exon 10	Exon 10 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.1465-115_c.2152inv	IMPPRECISE		MANUAL_OK	5to5	-	802	NA	0	6	0	7
P-0027548-T01-IM6	SOMATIC	HIST1H2AC	HIST1H3E	6	6	26132417	26225657	IGR: 8Kb before HIST1H2AC(+)	Exon 1 of HIST1H3E(+)	GRCh37	DELETION	HIST1H3E (NM_003532) rearrangement: c.275:HIST1H3E_chr6:g.26132417del	PRECISE		MANUAL_OK	3to5	-	93240	NA	0	8	7	9
P-0027553-T01-IM6	SOMATIC	KCNK3	CENPA	2	2	26917069	27014937	Intron of KCNK3(+):1Kb after exon 1	Intron of CENPA(+):61bp before exon 2	GRCh37	DELETION	KCNK3 (NM_002246) - CENPA (NM_001809) rearrangement: c.283+1043:KCNK3_c.101-62:CENPA	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KCNK3:CENPA}	97868	NA	0	4	7	4
P-0027627-T01-IM6	SOMATIC	BAP1	NISCH	3	3	52440900	52495299	Exon 8 of BAP1(-)	Intron of NISCH(+):2Kb after exon 3	GRCh37	DELETION	BAP1(NM_004656) rearrangement: c.604:BAP1_chr3:g.52495299del	PRECISE		MANUAL_OK	3to5	-	54399	NA	0	5	10	5
P-0027630-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962429	117651891	Intron of SDC4(-):720bp before exon 3	Intron of ROS1(-):1Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion (SDC4 exons 1-2 fused to ROS1 exons 32-43): t(6;20)(q22.1;q13.12)(chr6:g.117651891::chr20:g.43962429)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	16	10	36
P-0027590-T01-IM6	SOMATIC	EXOC3L2	ERCC2	19	19	45727771	45858072	Intron of EXOC3L2(-):264bp after exon 6	Exon 17 of ERCC2(-)	GRCh37	DELETION	ERCC2 (NM_000400) - EXOC3L2 (NM_138568) rearrangement: c.1581:ERCC2_c.540+265: EXOC3L2 del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ERCC2:EXOC3L2}	130301	NA	0	16	10	16
P-0027597-T01-IM6	SOMATIC	ASXL1	GDAP1L1	20	20	31021764	42888843	Intron of ASXL1(+):44bp after exon 11	Intron of GDAP1L1(+):2Kb after exon 3	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.1719+44:ASXL1_chr20:g.42888843inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11867079	NA	0	49	10	49
P-0027599-T01-IM6	SOMATIC	NF1	NF1	17	17	29681339	29689685	Intron of NF1(+):2Kb after exon 51	Intron of NF1(+):2Kb after exon 57	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.7615+1907_c.8377+1964inv.	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	8346	NA	0	23	0	23
P-0027609-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46267979	46275011	Intron of NCOA3(+):33bp after exon 14	Intron of NCOA3(+):805bp before exon 18	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.2707+33_c.3253-806inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7032	NA	0	11	10	11
P-0027623-T01-IM6	SOMATIC	FGFR2	MYLK	10	3	123240959	123525612	Intron of FGFR2(-):1Kb before exon 18	5-UTR of MYLK(-):193Kb before coding start	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(3;10)(q21.1;q26.13)(chr3:g.123525612::chr10:g.123240959)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {FGFR2:MYLK}	0	NA	0	56	10	61
P-0027635-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39835414	42867959	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10): c.127-1454:TMPRSS2_c.19-17870:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3032545	NA	0	19	10	20
P-0009450-T03-IM6	SOMATIC	NPRL3	AXIN1	16	16	146617	359938	Intron of NPRL3(-):2Kb after exon 6	Intron of AXIN1(-):34bp after exon 4	GRCh37	DELETION	AXIN1 (NM_003502) - NPRL3 (NM_001077350) rearrangement: c.1116+35:AXIN1_c.924+1526:NPRL3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AXIN1:NPRL3}	213321	NA	0	39	10	40
P-0009450-T03-IM6	SOMATIC	RASA1	RASA1	5	5	86628663	86642512	Intron of RASA1(+):204bp after exon 3	Exon 7 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.828+204_c.1073del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13849	NA	0	16	10	16
P-0027411-T01-IM6	SOMATIC	RFX6	ROS1	6	6	117287744	117609899	IGR: 89Kb before RFX6(+)	Exon 43 of ROS1(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.6800:ROS1_chr6:g.117287744inv	PRECISE		MANUAL_OK	3to3	-	322155	NA	0	4	10	5
P-0027414-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48650450	48651652	Exon 3 of GATA1(+)	Exon 5 of GATA1(+)	GRCh37	INVERSION	GATA1 (NM_002049) rearrangement: c.420_c.818inv	PRECISE		MANUAL_OK	5to5	-	1202	NA	0	65	10	79
P-0027432-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55153748	55223275	Intron of EGFR(+):56Kb before exon 2	Intron of EGFR(+):247bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.89-56231_c.890-248del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	69527	NA	0	3	0	3
P-0027592-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138545116	140492343	Intron of KIAA1549(-):768bp after exon 16	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused with BRAF exons 9-18) : c.5247+769:KIAA1549_c.1140+1765:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1947227	NA	0	49	10	55
P-0027593-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89692977	89694318	Exon 5 of PTEN(+)	Intron of PTEN(+):1Kb after exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.461_c.492+1310del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1341	NA	0	3	10	4
P-0027606-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11909944	12015781	Intron of ETV6(+):4Kb after exon 2	Intron of ETV6(+):7Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.163+4431_c.464-6577dup.	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	105837	NA	0	19	10	19
P-0025650-T02-IM6	SOMATIC	PIK3CD	CASZ1	1	1	9775651	10769924	Exon 4 of PIK3CD(+)	5-UTR of CASZ1(-):71Kb before coding start	GRCh37	INVERSION	CASZ1 (NM_001079843) - PIK3CD (NM_005026) rearrangement (CASZ1 exon 2 to PIK3CD exon 4): c.-76-4323:CASZ1_c.194:PIK3CD	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CASZ1:PIK3CD}	994273	NA	0	97	10	140
P-0025650-T02-IM6	SOMATIC	PIK3CD	KDF1	1	1	9776813	27279383	Intron of PIK3CD(+):136bp after exon 6	5-UTR of KDF1(-):3Kb before coding start	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.780+136:PIK3CD_chr1:g.27279383del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	17502570	NA	0	5	0	5
P-0025650-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39902555	42872614	Intron of ERG(-):45Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-2498:TMPRSS2_c.39+45031:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2970059	NA	0	32	10	118
P-0027614-T02-IM6	SOMATIC	IKBKE	IKBKE	1	1	206652419	206653446	Exon 10 of IKBKE(+)	Exon 12 of IKBKE(+)	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement : c.1126_c.1330inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1027	NA	0	2	7	2
P-0027614-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29687072	51199959	Intron of EWSR1(+):481bp before exon 10	Intron of ATF1(+):3Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-9 with ATF1 exons 4-7): t(12;22)(q13.12;q12.2)(chr12:g.51199959)(chr22:g.29687072)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	34	10	35
P-0027638-T01-IM6	SOMATIC	BCL6	TPRG1	3	3	187440526	189039628	Intron of BCL6(-):137bp before exon 10	3-UTR of TPRG1(+):114Kb after coding stop	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.1978-137:BCL6_chr3:g.189039628inv	PRECISE		MANUAL_OK	3to3	-	1599102	NA	0	23	10	22
P-0027645-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39950793	42866580	3-UTR of ERG(-):83Kb after coding stop	Intron of TMPRSS2(-):75bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1-2 fused to ERG exons 3-11):c.127-75:TMPRSS2_c.-47-3122:ERGdel	PRECISE		MANUAL_OK	3to5	-	2915787	NA	0	12	10	12
P-0027645-T01-IM6	SOMATIC	SHQ1	SHQ1	3	3	72799596	72810722	Exon 11 of SHQ1(-)	Intron of SHQ1(-):11Kb before exon 11	GRCh37	INVERSION	SHQ1 (NM_018130) rearrangement: c.1182-10735_c.1573inv	PRECISE		MANUAL_OK	3to3	-	11126	NA	0	27	10	26
P-0027657-T01-IM6	SOMATIC	C14orf37	DICER1	14	14	58473233	95562746	Intron of C14orf37(-):1Kb before exon 7	Exon 25 of DICER1(-)	GRCh37	INVERSION	DICER1 (NM_030621) rearrangement: c.4511_chr14:g.58473233inv	PRECISE		MANUAL_OK	3to3	-	37089513	NA	0	13	10	13
P-0027661-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56437414	56441495	Intron of RNF43(-):95bp after exon 8	Intron of RNF43(-):534bp before exon 4	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.952+96_c.376-534dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	4081	NA	0	35	10	37
P-0027664-T01-IM6	SOMATIC	FOXL2	FOXL2	3	3	138664553	138665648	Exon 1 of FOXL2(-)	5-UTR of FOXL2(-):1Kb before coding start	GRCh37	INVERSION	FOXL2 (NM_023067) rearrangement: c.1012_c.-84inv	PRECISE		MANUAL_OK	3to3	-	1095	NA	0	2	7	1
P-0027676-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31368120	31373508	5-UTR of DNMT3B(+):9bp before coding start	Intron of DNMT3B(+):799bp before exon 5	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.-6-4_c.307-800inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5388	NA	0	4	8	4
P-0027685-T01-IM6	SOMATIC	RAB5C	ALK	17	2	40279299	29447944	Intron of RAB5C(-):433bp before exon 5	Intron of ALK(-):382bp after exon 19	GRCh37	TRANSLOCATION	RAB5C (NM_001252039) - ALK (NM_004304) fusion: t(2;17)(p23.2;q21.2)(chr2:g.29447944::chr17:g.40279299)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	49	10	49
P-0022593-T02-IM6	SOMATIC	TSTA3	MSH3	8	5	144698059	79966005	Intron of TSTA3(-):216bp after exon 3	Exon 4 of MSH3(+)	GRCh37	TRANSLOCATION	MSH3 (NM_002439) - TSTA3 (NM_003313) rearrangement: t(5;8)(q14.1;q24.3)(chr5:g.79966005::chr8:g.144698059)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MSH3:TSTA3}	0	NA	0	14	0	14
P-0027741-T01-IM6	SOMATIC	CEACAM7	FGFR2	19	10	42175729	123241990	Promoter of CEACAM7(-):2Kb from tx start	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;19)(q26.13;q13.2)(chr10:g.123241990::chr19:g.42175729)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FGFR2:CEACAM7}	0	NA	0	31	10	32
P-0027741-T01-IM6	SOMATIC	ERCC2	ZNF552	19	19	45860662	58327100	Intron of ERCC2(-):33bp before exon 15	Promoter of ZNF552(-):9Kb from tx start	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.1378-33:ERCC2_chr19:g.58327100inv	PRECISE		MANUAL_OK	3to3	-	12466438	NA	0	71	10	73
P-0027747-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55206662	55222115	Intron of EGFR(+):3Kb before exon 2	Intron of EGFR(+):270bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-3317_c.889+270del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	15453	NA	0	52	10	57
P-0008996-T04-IM6	SOMATIC	ROS1	CEP85L	6	6	117687428	118907434	Exon 18 of ROS1(-)	Intron of CEP85L(-):20Kb before exon 4	GRCh37	DELETION	CEP85L (NM_001178035) - ROS1 (NM_002944) rearrangement : c.242-19954:CEP85L_c.2623:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CEP85L:ROS1}	1220006	NA	0	41	10	44
P-0016580-T02-IM6	SOMATIC	ALK	EML4	2	2	29447582	42524914	Intron of ALK(-):744bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1489+2257:EML4_c.3172+748:ALKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077332	NA	0	7	0	6
P-0026777-T02-IM6	SOMATIC	KIF5B	RET	10	10	32313518	43610717	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):533bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-16 fused to RET exons 12-20): c.1726-1554:KIF5B_c.2136+533:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297199	NA	0	41	10	60
P-0027722-T01-IM6	SOMATIC	AR	AR	X	X	66935377	66943477	Intron of AR(+):2Kb before exon 5	Intron of AR(+):50bp before exon 8	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-1943_c.2608-51del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	8100	NA	0	64	10	66
P-0027723-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316390	43610171	Intron of KIF5B(-):965bp after exon 15	Exon 11 of RET(+)	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 11-20):c.1725+966:KIF5B_c.2123:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:RET}	11293781	NA	0	23	10	27
P-0027729-T01-IM6	SOMATIC	AXIN2	SDK2	17	17	63533031	71601608	Exon 7 of AXIN2(-)	Intron of SDK2(-):39Kb after exon 1	GRCh37	DUPLICATION	SDK2 (NM_001144952) - AXIN2 (NM_004655) rearrangement: c.64+38556:SDK2_c.1863:AXIN2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AXIN2:SDK2}	8068577	NA	0	28	10	29
P-0027731-T01-IM6	SOMATIC	CDH1	TANGO6	16	16	68849530	68971469	Exon 10 of CDH1(+)	Intron of TANGO6(+):7Kb after exon 14	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.1433:CDH1_chr16:g.68971469inv	PRECISE		MANUAL_OK	5to5	-	121939	NA	0	17	10	19
P-0026247-T02-IM6	SOMATIC	RTEL1	ZGPAT	20	20	62317214	62344072	Exon 16 of RTEL1(+)	Intron of ZGPAT(+):4Kb after exon 2	GRCh37	DUPLICATION	ZGPAT (NM_032527) - RTEL1 (NM_032957) rearrangement: c.584+3556:ZGPAT_c.1409:RTEL1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZGPAT:RTEL1}	26858	NA	0	7	10	9
P-0027754-T02-IM6	SOMATIC	CSDE1	CSDE1	1	1	115273268	115275224	Exon 12 of CSDE1(-)	Exon 11 of CSDE1(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.1188+1_c.1190del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1956	NA	0	5	10	5
P-0027758-T01-IM6	SOMATIC	RASA1	FGF18	5	5	86670205	170925108	Intron of RASA1(+):68bp after exon 14	IGR: 78Kb before FGF18(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement:  c.1934+68:RASA1_chr5:g.170925108del	PRECISE		MANUAL_OK	3to5	-	84254903	NA	0	10	10	11
P-0027759-T01-IM6	SOMATIC	FGFR2	LINC01164	10	10	123240454	133670877	Intron of FGFR2(-):919bp before exon 18	IGR: 66Kb before LINC01164(-)	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2302-919:FGFR2_chr10:g.133670877inv	PRECISE		MANUAL_OK	5to5	-	10430423	NA	0	146	10	180
P-0027764-T01-IM6	SOMATIC	SLCO1A2	RET	12	10	21413909	43611187	IGR: 4Kb before SLCO1A2(-)	Intron of RET(+):844bp before exon 12	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(10;12)(q11.21;p12.2)(chr10:g.43611187::chr12:g.21413909)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	33	10	33
P-0027770-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55198641	55222091	Intron of EGFR(+):11Kb before exon 2	Intron of EGFR(+):246bp after exon 7	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.89-11338_c.889+246del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	23450	NA	0	25	10	409
P-0027811-T01-IM6	SOMATIC	MTOR	HIVEP3	1	1	11272555	42333975	Intron of MTOR(-):24bp before exon 23	3-UTR of HIVEP3(-):168Kb after coding stop	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.3399-24:MTOR_chr1:g.42333975inv	PRECISE		MANUAL_OK	3to3	-	31061420	NA	0	14	10	13
P-0027811-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63852782	63862183	Exon 10 of ARID5B(+)	IGR: 53Kb before ARID5B(+)	GRCh37	INVERSION	ARID5B (NM_032199) rearrangement: c.3560:ARID5B_chr10:g.463862183inv	PRECISE		MANUAL_OK	3to3	-	9401	NA	0	3	7	3
P-0027831-T01-IM6	SOMATIC	MAP3K14	AGAP2	17	12	43362279	58127459	Exon 6 of MAP3K14(-)	Intron of AGAP2(-):349bp after exon 5	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(12;17)(q14.1;q21.31)(chr12:g.58127459::chr17:g.43362279)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	68	10	68
P-0027853-T01-IM6	SOMATIC	ALK	EML4	2	2	29447734	42553137	Intron of ALK(-):592bp after exon 19	Intron of EML4(+):156bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20-29 ): c.2243-157:EML4_c.3172+593:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13105403	NA	0	139	10	138
P-0027991-T01-IM6	SOMATIC	KIF5B	RET	10	10	32304835	43608201	Intron of KIF5B(-):248bp before exon 25	Intron of RET(+):99bp before exon 9	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-24 fused to RET exons 9-20): c.2762-248:KIF5B_c.1649-100:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11303366	NA	0	60	10	68
P-0004918-T02-IM6	SOMATIC	RGS7	FH	1	1	241357653	241666009	Intron of RGS7(-):96Kb before exon 3	Intron of FH(-):139bp before exon 8	GRCh37	DUPLICATION	RGS7 (NM_002924) - FH (NM_000143) rearrangement: c.79-95591:RGS7_c.1109-139:FHdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RGS7:FH}	308356	NA	0	24	10	26
P-0004918-T02-IM6	SOMATIC	STAT3	FSCB	17	14	40469176	44234319	Intron of STAT3(-):23bp after exon 22	IGR: 739Kb before FSCB(-)	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(14;17)(q21.2;q21.2)(chr14:g.44234319::chr17:g.40469176)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	13
P-0004918-T02-IM6	SOMATIC	SOX9	NPTX1	17	17	70120232	78453502	Exon 3 of SOX9(+)	IGR: 13Kb before NPTX1(-)	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.1234:SOX9_chr17:g.78453502inv	PRECISE		MANUAL_OK	5to5	-	8333270	NA	0	187	10	285
P-0027540-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21968902	21987653	Intron of CDKN2Ap14ARF(-):661bp before exon 3	Intron of CDKN2Ap14ARF(-):6Kb after exon 1	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.*102-661_c.193+6485del	PRECISE		MANUAL_OK	3to5	-	18751	NA	NA	15	10	NA
P-0027540-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21968902	21987653	Intron of CDKN2Ap16INK4A(-):661bp before exon 3	IGR: 19Kb before CDKN2Ap16INK4A	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.458-661_chr9:g.21987653del	PRECISE		MANUAL_OK	3to5	-	18751	NA	NA	15	10	NA
P-0027757-T01-IM6	SOMATIC	SYK	SYK	9	9	93607876	93624488	Exon 3 of SYK(+)	Exon 4 of SYK(+)	GRCh37	DELETION	SYK (NM_003177) rearrangement: c.578_c.579del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16612	NA	0	3	10	3
P-0027874-T01-IM6	SOMATIC	ERBB3	RPS24	12	10	56494017	79794131	Exon 26 of ERBB3(+)	Intron of RPS24(+):469bp after exon 1	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(10;12)(q22.3;q13.2)(chr10:g.79794131::chr12:g.56494017)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	214	10	214
P-0027879-T01-IM6	SOMATIC	CD2AP	ROS1	6	6	47344251	117641662	IGR: 101Kb before CD2AP(+)	Intron of ROS1(-):469bp before exon 36	GRCh37	DELETION	ROS1 (NM_002944) - c.5778-469:ROS1_chr6:g.47344251del	PRECISE		MANUAL_OK	3to5	-	70297411	NA	0	66	10	72
P-0027889-T01-IM6	SOMATIC	ETV6	APOLD1	12	12	12030422	12909150	Intron of ETV6(+):7Kb before exon 6	Intron of APOLD1(+):30Kb after exon 1	GRCh37	DELETION	ETV6:NM_001987) - APOLD1 (NM_001130415) rearrangement: c.1010-6957:ETV6_c.96+30120:APOLD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ETV6:APOLD1}	878728	NA	0	9	10	10
P-0027889-T01-IM6	SOMATIC	STK11	STK11	19	19	1205538	1207181	Promoter of STK11(+):259bp from tx start	Exon 1 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearragement: c.269:STK11_chr19:g.1205538del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1643	NA	0	10	10	11
P-0027892-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176636915	176643220	Exon 5 of NSD1(+)	Intron of NSD1(+):4Kb after exon 5	GRCh37	DELETION	NSD1 (NM_022455) rearrangment: c.1515_c.3796+4024del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6305	NA	0	18	10	22
P-0012689-T02-IM6	SOMATIC	UPF1	MDH1B	19	2	18956810	207599242	Exon 2 of UPF1(+)	IGR: 3Kb before MDH1B(-)	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(2;19)(q33.3;p13.11)(chr2:g.207599242::chr19:g.18956810)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	14
P-0012689-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55099348	55222335	Intron of EGFR(+):12Kb after exon 1	Intron of EGFR(+):490bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+12290_c.889+490del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	122987	NA	0	116	10	671
P-0027747-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55240926	55269265	Intron of EGFR(+):109bp after exon 17	Intron of EGFR(+):162bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+109_c.3115-163dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28339	NA	0	306	10	338
P-0027939-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56438079	56441029	Intron of RNF43(-):64bp after exon 7	Intron of RNF43(-):68bp before exon 4	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.849+65_c.376-68dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	2950	NA	0	31	10	31
P-0027953-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611278	61644979	Intron of RET(+):753bp before exon 12	Intron of CCDC6(-):21Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+20901:CCDC6_c.2137-754:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18033701	NA	0	57	10	70
P-0027956-T02-IM6	SOMATIC	PAX8	PAX8	2	2	113982659	114008602	Intron of PAX8(-):2Kb after exon 10	Intron of PAX8(-):4Kb before exon 3	GRCh37	DUPLICATION	PAX8 (NM_003466) fusion: c.1189+2073_c.26-4106dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	25943	NA	0	13	10	13
P-0027982-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87144139	87476236	IGR: 139Kb before NTRK2(+)	Intron of NTRK2(+):234bp after exon 15	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.1444+234_chr9:g.87144139del	PRECISE		MANUAL_OK	3to5	-	332097	NA	0	36	10	38
P-0027982-T01-IM6	SOMATIC	TGFBR1	ALG2	9	9	101909991	101977603	Exon 8 of TGFBR1(+)	Promoter of ALG2(-):1Kb from tx start	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.1311_chr9:g.101977603del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	67612	NA	0	10	10	10
P-0027986-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47087940	47114620	Intron of SETD2(-):36bp after exon 16	Intron of SETD2(-):6Kb before exon 13	GRCh37	DUPLICATION	SETD2 (NM_014159) rearrangement: c.7098+37_c.6061-6012dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	26680	NA	0	43	10	45
P-0027989-T01-IM6	SOMATIC	DYM	ROS1	18	6	46871756	117643946	Intron of DYM(-):12Kb before exon 7	Intron of ROS1(-):1Kb before exon 35	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;18)(q22.1;q21.1)(chr6:g.117643946::chr18:g.18:46871756)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	8	5
P-0027995-T01-IM6	SOMATIC	ARID1B	ZDHHC14	6	6	157496077	157787825	Intron of ARID1B(+):826bp after exon 11	IGR: 15Kb before ZDHHC14(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2961+826:ARID1B_chr6:g.157787825del	PRECISE		MANUAL_OK	3to5	-	291748	NA	0	16	10	17
P-0027995-T01-IM6	SOMATIC	KDM5C	AMER1	X	X	53237713	63411271	Intron of KDM5C(-):2Kb after exon 12	Exon 2 of AMER1(-)	GRCh37	INVERSION	KDM5C (NM_004187) - AMER1 (NM_152424) rearrangement: c.1746+1883:KDM5C_c.1896:AMER1inv.	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10173558	NA	0	15	10	26
P-0028009-T01-IM6	SOMATIC	ZNF598	TSC2	16	16	2053138	2096232	Intron of ZNF598(-):17bp before exon 5	Promoter of TSC2(+):2Kb from tx start	GRCh37	DUPLICATION	NTHL1 (NM_002528) - ZNF598 (NM_178167) rearrangement: c.275:NTHL1_c.338-17:ZNF598dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	43094	NA	0	60	10	65
P-0028009-T01-IM6	SOMATIC	AMER1	ASB12	X	X	63413136	63450173	Exon 2 of AMER1(-)	5-UTR of ASB12(-):6Kb before coding start	GRCh37	DUPLICATION	AMER1 (NM_152424) - ASB12 (NM_130388) rearrangement: c.31:AMER1_c.-25+170:ASB12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AMER1:ASB12}	37037	NA	0	18	10	18
P-0028013-T01-IM6	SOMATIC	EWSR1	CREM	22	10	29684902	35491023	Intron of EWSR1(+):127bp after exon 9	Intron of CREM(+):609bp after exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREM (NM_181571) fusion (EWSR1 exon 9 fused to CREM exon 7): t(10;22)(p11.21;q12.2)(chr10:g.35491023::chr22:g.29684902)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:CREM}	0	NA	0	20	10	26
P-0028018-T01-IM6	SOMATIC	ERCC2	LMTK3	19	19	45873582	48991474	Intron of ERCC2(-):92bp before exon 2	Intron of LMTK3(-):2Kb before exon 16	GRCh37	DELETION	LMTK3 (NM_001080434) - ERCC2 (NM_000400) rearrangement: c.4454-2428:LMTK3_c.6-92:ERCC2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {LMTK3:ERCC2}	3117892	NA	0	21	10	21
P-0003233-T04-IM6	SOMATIC	SLIT3	FGFR4	5	5	168403446	176519595	Intron of SLIT3(-):93Kb before exon 5	Intron of FGFR4(+):51bp before exon 8	GRCh37	DUPLICATION	FGFR4 (NM_213647) rearrangement: c.919-52:FGFR4_chr5:g.168403446dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	8116149	NA	0	75	10	81
P-0009301-T02-IM6	SOMATIC	FLCN	SMIM14	17	4	17120488	39589422	Exon 10 of FLCN(-)	Intron of SMIM14(-):15Kb before exon 3	GRCh37	TRANSLOCATION	FLCN (NM_144997) rearrangement: t(4;17)(p14;p11.2)(chr4:g.39589422::chr17:g.17120488)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	12	10	15
P-0009301-T02-IM6	SOMATIC	LOC100506474	MSH6	2	2	13175938	48026324	IGR: 69Kb before LOC100506474(-)	Exon 4 of MSH6(+)	GRCh37	INVERSION	MSH6 (NM_000179) rearrangement: c.1202:MSH6_chr2:g.13175938inv	PRECISE		MANUAL_OK	5to5	-	34850386	NA	0	24	10	29
P-0009301-T02-IM6	SOMATIC	ALK	EML4	2	2	29446651	42501297	Intron of ALK(-):257bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused to ALK exons 20-29): c.668-6693:EML4_c.3173-257:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054646	NA	0	45	10	44
P-0010965-T02-IM6	SOMATIC	SYS1	NCOA3	20	20	43996497	46275932	Intron of SYS1(+):2Kb after exon 3	Exon 18 of NCOA3(+)	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.3368:NCOA3_chr20:g.43996497inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2279435	NA	0	24	10	23
P-0013841-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683522	32414335	Intron of EWSR1(+):399bp after exon 8	Intron of WT1(-):34bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414335::chr22:g.29683522)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	57	10	53
P-0017214-T02-IM6	SOMATIC	KIF5B	RET	10	10	32306314	43610647	Intron of KIF5B(-):27bp before exon 24	Intron of RET(+):463bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-23 fused to RET exons 12-20): c.2545-27:KIF5B_c.2136+463:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11304333	NA	0	20	10	23
P-0017214-T02-IM6	SOMATIC	TSC2	TSC2	16	16	2135540	2136633	Intron of TSC2(+):217bp after exon 36	Intron of TSC2(+):99bp before exon 38	GRCh37	INVERSION	TSC2 (NM_000548): c.4662+217_c.4850-100del	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1093	NA	0	4	0	4
P-0026657-T02-IM6	SOMATIC	ALK	EML4	2	2	29446952	42553363	Intron of ALK(-):558bp before exon 20	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fuses with ALK exons 20-29) : c.2312:EML4_c.3173-558:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13106411	NA	0	5	10	5
P-0027307-T02-IM6	SOMATIC	PARK2	PARK2	6	6	162622284	162644833	Exon 4 of PARK2(-)	Intron of PARK2(-):23Kb before exon 4	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.413-22549_c.413del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22549	NA	0	39	10	41
P-0027762-T01-IM6	SOMATIC	ZC3HAV1	BRAF	7	7	138765420	140485946	Intron of ZC3HAV1(-):431bp before exon 4	Intron of BRAF(-):1Kb after exon 9	GRCh37	DUPLICATION	ZC3HAV1 (NM_020119) - BRAF (NM_004333) rearrangement: c.698-431:ZC3HAV1_c.1177+1402:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ZC3HAV1:BRAF}	1720526	NA	0	4	5	4
P-0027823-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40053392	42869556	IGR: 57Kb before LINC00114(-)	Intron of TMPRSS2(-):489bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+490:TMPRSS2_chr21:g.40053392del	PRECISE		MANUAL_OK	3to5	-	2816164	NA	0	70	10	79
P-0028032-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3798795	3820624	Intron of CREBBP(-):832bp after exon 21	Exon 14 of CREBBP(-)	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.2827_c.3836+833dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	21829	NA	0	8	10	8
P-0028037-T01-IM6	SOMATIC	AP3D1	DOT1L	19	19	2103210	2164153	Intron of AP3D1(-):943bp before exon 30	5-UTR of DOT1L(+):30bp before coding start	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.-31:DOT1L_chr19:g.2103210del	PRECISE		MANUAL_OK	3to5	-	60943	NA	0	82	10	95
P-0028038-T01-IM6	SOMATIC	EZH1	RAB37	17	17	40872537	72716342	Intron of EZH1(-):70bp before exon 7	Intron of RAB37(+):9Kb before exon 2	GRCh37	INVERSION	RAB37 (NM_175738) - EZH1 (NM_001991) rearrangement: c.73-9053:RAB37_c.488-70:EZH1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RAB37:EZH1}	31843805	NA	0	7	10	7
P-0012206-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15353806	15378570	Exon 14 of BRD4(-)	Intron of BRD4(-):208bp before exon 4	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.3074_c.424-208del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	24764	NA	0	113	10	130
P-0012206-T02-IM6	SOMATIC	AGO2	AGO2	8	8	141567859	141572551	Intron of AGO2(-):524bp before exon 8	Exon 4 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.879-524_c.518+1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4692	NA	0	55	10	60
P-0022380-T02-IM6	SOMATIC	RET	CCDC6	10	10	43610659	61644070	Intron of RET(+):475bp after exon 11	Intron of CCDC6(-):22Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET(NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+21810:CCDC6_c.2136+475:c.2136+475inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18033411	NA	0	56	10	82
P-0022380-T02-IM6	SOMATIC	BRIP1	CEP112	17	17	59770894	64172672	Intron of BRIP1(-):21bp before exon 18	Intron of CEP112(-):275bp after exon 3	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.2493-21:BRIP1_chr17:g.64172672	PRECISE		MANUAL_OK	3to3	-	4401778	NA	0	17	10	16
P-0022380-T02-IM6	SOMATIC	RECQL4	ZNF34	8	8	145739340	146003588	Exon 12 of RECQL4(-)	Intron of ZNF34(-):39bp before exon 4	GRCh37	DUPLICATION	RECQL4 (NM_004260) - SNF34 (NM_024325) rearrangement:c.2030RECQL4_g.146003588ZNF34dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RECQL4:ZNF34}	264248	NA	0	28	10	30
P-0028118-T01-IM6	SOMATIC	MDC1	GUSBP4	6	6	30681681	58454054	Exon 3 of MDC1(-)	IGR: 182Kb before GUSBP4(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.416:MDC1_chr6:g.58454054inv	PRECISE		MANUAL_OK	5to5	-	27772373	NA	0	21	10	39
P-0001181-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1739828	1808830	Intron of TACC3(+): 399bp after exon 10	Intron of FGFR3(+): 13bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) Duplication:  (c.2275-13_c.1941+399dup)	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	69002	NA	0	10	17	13
P-0016833-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3776522	3777946	3-UTR of CREBBP(-):1Kb after coding stop	Exon 31 of CREBBP(-)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.*1197_c.7102inv	PRECISE		MANUAL_OK	3to3	-	1424	NA	0	3	6	3
P-0021332-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263536	41266475	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-1976_c.272del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2939	NA	0	3	10	3
P-0022192-T01-IM6	SOMATIC	NAB2	LRP1	12	12	57486554	57545850	Intron of NAB2(+):145bp before exon 4	Intron of LRP1(+):2Kb before exon 7	GRCh37	DUPLICATION	LRP1 (NM_002332) - NAB2 (NM_005967) rearrangement: c.842-2141:LRP1_c.1092-146:NAB2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LRP1:NAB2}	59296	NA	0	8	10	8
P-0027091-T01-IM6	SOMATIC	TET1	TET1	10	10	70450363	70451034	Intron of TET1(+):201bp before exon 12	Exon 12 of TET1(+)	GRCh37	DELETION	TET1 (NM_030625) rearrangement: c.5405-202_c.5874del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	671	NA	0	16	10	20
P-0027275-T03-IM6	SOMATIC	AMER1	MSN	X	X	63411493	65018297	Exon 2 of AMER1(-)	IGR: 131Kb before MSN(+)	GRCh37	INVERSION	AMER1 (NM_152424) rearrangement: c.1674:AMER1_chrX:g.65018297inv	PRECISE		MANUAL_OK	3to3	-	1606804	NA	0	63	10	62
P-0027575-T02-IM6	SOMATIC	BRCA2	PCDH7	13	4	32914195	30956065	Exon 11 of BRCA2(+)	Intron of PCDH7(+):34Kb after exon 2	GRCh37	TRANSLOCATION	PCDH7 (NM_001173523) - BRCA2 (NM_000059) rearrangement: t(4;13)(p15.1;q13.1)(chr4:g.30956065::chr13:g.32914195)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PCDH7:BRCA2}	0	NA	0	64	10	64
P-0027643-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12002017	12014330	Intron of ETV6(+):4Kb before exon 4	Intron of ETV6(+):8Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.329-4344_c.463+7835del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	12313	NA	0	57	10	63
P-0027647-T01-IM6	SOMATIC	APC	APC	5	5	112092099	112178051	Intron of APC(+):1Kb after exon 2	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.135+1377_c.6760del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	85952	NA	0	10	10	11
P-0027658-T01-IM6	SOMATIC	TP53	TP53	17	17	7579544	7581086	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.143_chr17:g.7581086del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1542	NA	0	49	10	54
P-0027658-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15269477	15276681	Promoter of NOTCH3(-):966bp from tx start	Exon 30 of NOTCH3(-)	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.*1996_c.5584inv	IMPPRECISE		MANUAL_OK	3to3	-	7204	NA	0	25	0	24
P-0028143-T01-IM6	SOMATIC	TCF7L2	FAM204A	10	10	114912160	120075005	Exon 11 of TCF7L2(+)	Intron of FAM204A(-):4Kb before exon 7	GRCh37	INVERSION	FAM204A (NM_001134672) - TCF7L2 (NM_001146274) rearrangement: c.544-4180:FAM204A_c.1230:TCF7L2	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAM204A:TCF7L2}	5162845	NA	0	45	10	50
P-0028149-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11941407	12015551	Intron of ETV6(+):36Kb after exon 2	Intron of ETV6(+):7Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.163+35894_c.464-6807del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	74144	NA	0	32	10	32
P-0028149-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857064	10010965	Exon 13 of GRIN2A(-)	Intron of GRIN2A(-):21Kb after exon 3	GRCh37	INVERSION	GRIN2A (NM_001134407) rearrangement: c.4337_c.1007+20851inv	PRECISE		MANUAL_OK	3to3	-	153901	NA	0	5	10	5
P-0028149-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69054080	69058481	Intron of PREX2(+):3Kb after exon 33	Exon 34 of PREX2(+)	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.4087+3328_c.4125inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4401	NA	0	6	10	6
P-0028155-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187630972	187697960	Exon 2 of FAT1(-)	IGR: 189Kb before FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.10_chr4:g.187697960del	PRECISE		MANUAL_OK	3to5	-	66988	NA	0	5	10	7
P-0028160-T01-IM6	SOMATIC	MIPOL1	FOXA1	14	14	38004592	38060868	Intron of MIPOL1(+):12Kb before exon 15	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	FOXA1 (NM_004496) rearrangement: c.1121:FOXA1_chr14:g.38004592dup	PRECISE		MANUAL_OK	5to3	-	56276	NA	0	19	10	21
P-0028164-T01-IM6	SOMATIC	SMAD4	AGMO	18	7	48581266	15569155	Exon 5 of SMAD4(+)	Intron of AGMO(-):15Kb after exon 3	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) - AGMO (NM_001004320) rearrangement: t(7;18)(p21;q21.2)(chr7:g.15569155::chr18:g.48581266)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMAD4:AGMO}	0	NA	0	58	10	58
P-0027762-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187497781	187517724	IGR: 11Kb before FAT1(-)	Exon 25 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.12970:FAT1_chr4:g.187497781del	PRECISE		MANUAL_OK	3to5	-	19943	NA	0	5	10	5
P-0028195-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39934175	39940737	Exon 4 of BCOR(-)	5-UTR of BCOR(-):29Kb before coding start	GRCh37	INVERSION	BCOR (NM_001123385) rearrangement: c.-40-3515_c.424inv	PRECISE		MANUAL_OK	3to3	-	6562	NA	0	12	10	12
P-0028200-T01-IM6	SOMATIC	LINC00911	RXRA	14	9	85179414	137321221	IGR: 681Kb before LINC00911(+)	Intron of RXRA(+):135bp after exon 7	GRCh37	TRANSLOCATION	RXRA (NM_002957) translocation: t(9;14)(q34.2;q31.3)(chr9:g.137321221::chr14:g.85179414)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	20	10	20
P-0028206-T01-IM6	SOMATIC	RB1	RB1	13	13	49050587	49051458	Intron of RB1(+):249bp before exon 25	Intron of RB1(+):32bp before exon 26	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2521-250_c.2664-33del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	871	NA	0	4	0	4
P-0028208-T01-IM6	SOMATIC	FGFR2	ATE1	10	10	123241656	123402867	Intron of FGFR2(-):2Kb after exon 17	IGR: 97Kb before ATE1(-)	GRCh37	DUPLICATION	FGFR2 (NM_000141) rearrangement: c.2301+1556_chr10:g.123402867dup	PRECISE		MANUAL_OK	5to3	-	161211	NA	0	161	10	172
P-0028208-T01-IM6	SOMATIC	INSR	INSR	19	19	7122668	7123685	Exon 19 of INSR(-)	Intron of INSR(-):685bp before exon 18	GRCh37	DELETION	INSR (NM_000208) rearrangement: c.3259-685_c.3486del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1017	NA	0	17	10	36
P-0028208-T01-IM6	SOMATIC	CTD-3080P12.3	TERT	5	5	1172682	1295291	Promoter of CTD-3080P12.3(-):528bp from tx start	Promoter of TERT(-):42Kb from tx start	GRCh37	DUPLICATION	TERT (NM_198253) rearrangement: c.-187_chr5:g.1172682dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CTD-3080P12.3:TERT}	122609	NA	0	46	10	52
P-0028241-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268525	55868639	Intron of EGFR(+):355bp before exon 25	Intron of SEPT14(-):4Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion (EGFR exons 1-24 fused to SEPT14 exon 10): c.2947-356:EGFR_c.1119+4312:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	600114	NA	2	265	10	2430
P-0028241-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268708	55269432	Intron of EGFR(+):172bp before exon 25	Exon 26 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-173_c.3119del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	724	NA	2	15	10	15
P-0028241-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269878	55270754	Intron of EGFR(+):331bp before exon 27	Intron of EGFR(+):436bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3163-332_c.3271+436del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	876	NA	0	7	10	8
P-0028250-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11078388	11102168	5-UTR of SMARCA4(+):16Kb before coding start	Intron of SMARCA4(+):169bp after exon 8	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.-32+6538_c.1419+169dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	23780	NA	0	10	10	10
P-0028254-T01-IM6	SOMATIC	KMT2C	XRCC2	7	7	152027786	152371818	Exon 3 of KMT2C(-)	Intron of XRCC2(-):1Kb after exon 1	GRCh37	DELETION	XRCC2 (NM_005431) - KMT2C (NM_170606) rearrangement: c.39+1308:XRCC2_c.289:KMT2Cdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XRCC2:KMT2C}	344032	NA	0	9	10	9
P-0027045-T01-IM6	SOMATIC	CBL	CBL	11	11	119126552	119168343	Intron of CBL(+):16Kb before exon 3	Intron of CBL(+):152bp after exon 14	GRCh37	DUPLICATION	CBL (NM_005188) rearrangement: c.444-15893_c.2251+152dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : out of frame	41791	NA	0	7	10	7
P-0015434-T02-IM6	SOMATIC	ALK	EML4	2	2	29448197	42522719	Intron of ALK(-):129bp after exon 19	Intron of EML4(+):63bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon 13 fused to ALK exon20): c.1489+63:EML4_c.3172+130:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13074522	NA	0	64	10	64
P-0028090-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862200	42867146	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):641bp before exon 3	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+8087:ERG_c.127-641:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3004946	NA	0	49	10	56
P-0028093-T01-IM6	SOMATIC	CRYL1	FLT1	13	13	20956827	28880816	IGR: 21Kb before CRYL1(-)	Exon 29 of FLT1(-)	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.3814:FLT1_chr13:g.20956827del	PRECISE		MANUAL_OK	3to5	-	7923989	NA	0	4	10	4
P-0028094-T01-IM6	SOMATIC	COL5A3	NOTCH3	19	19	10091386	15289950	Intron of COL5A3(-):18bp before exon 35	Exon 22 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.3604:NOTCH3_chr19:g.10091386del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH3:COL5A3}	5198564	NA	0	5	10	5
P-0028098-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21970910	21972202	Exon 2 of CDKN2Ap14ARF(-)	Intron of CDKN2A(-):995bp before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_058195) rearrangement: c.*92_c.194-995del	PRECISE		MANUAL_OK	3to5	-	1292	NA	NA	51	10	NA
P-0028098-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21970910	21972202	Exon 2 of CDKN2Ap16INK4A(-)	Intron of CDKN2A(-):995bp before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.448_c.151-995del	PRECISE		MANUAL_OK	3to5	-	1292	NA	NA	51	10	NA
P-0028119-T01-IM6	SOMATIC	PHGDH	NOTCH2	1	1	120256472	120466557	Intron of PHGDH(+):2Kb after exon 1	Exon 26 of NOTCH2(-)	GRCh37	INVERSION	PHGDH (NM_006623) - NOTCH2 (NM_024408) rearrangement: c.138+1689:PHGDH_c.4562:NOTCH2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PHGDH:NOTCH2}	210085	NA	0	188	10	182
P-0028119-T01-IM6	SOMATIC	AXL	WSB1	19	17	41748655	25669096	Intron of AXL(+):132bp before exon 11	IGR: 48Kb before WSB1(+)	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(17;19)(q11.1;q13.2)(chr17:g.25669096::chr19:g.41748655)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	6	5
P-0028377-T01-IM6	SOMATIC	RAD54L	LINC00538	1	1	46736749	213770090	Intron of RAD54L(+):292bp after exon 11	IGR: 328Kb before LINC00538(+)	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.1169+292:RAD54L_chr1:g.213770090inv	IMPPRECISE		MANUAL_OK	3to3	-	167033341	NA	0	7	0	7
P-0028378-T01-IM6	SOMATIC	CTNNA3	FGFR2	10	10	68130199	123241260	Intron of CTNNA3(-):9Kb after exon 12	Intron of FGFR2(-):2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - CTNNA3 (NM_013266) rearrangement: c.2302-1725:FGFR2_c.1732+8711:CTNNA3inv	PRECISE		MANUAL_OK	3to3	-	55111061	NA	0	83	10	78
P-0022291-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76926078	76939063	Intron of ATRX(-):6Kb after exon 10	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.1685_c.3809+5643inv	PRECISE		MANUAL_OK	3to3	-	12985	NA	0	41	10	41
P-0028319-T01-IM6	SOMATIC	NAB2	LFNG	12	7	57486061	2549338	Intron of NAB2(+):169bp before exon 3	Promoter of LFNG(+):3Kb from tx start	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(7;12)(p22.3;q13.3)(chr7:g.2549338::chr12:g.57486061)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	21	10	19
P-0028319-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1741566	1809093	Intron of TACC3(+):61bp after exon 11	3-UTR of FGFR3(+):13Kb after coding stop	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) rearrangement: c.*104:FGFR3_c.2018+61:TACC3dup	PRECISE		MANUAL_OK	5to3	-	67527	NA	0	3	10	3
P-0028321-T01-IM6	SOMATIC	RNPEP	ELF3	1	1	201971987	201981521	Intron of RNPEP(+):377bp before exon 9	Exon 4 of ELF3(+)	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.435:ELF3_chr1:g.201971987inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	9534	NA	0	34	10	33
P-0028321-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1733405	1807884	Intron of TACC3(+):377bp after exon 6	Exon 14 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-14 fused to TACC3 exons 7-16): c.1943:FGFR3_c.1591+377:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	74479	NA	0	3	6	3
P-0121446-T03-IM6	SOMATIC	ALK	ALK	2	2	29448689	29572365	Intron of ALK(-):258bp before exon 19	Intron of ALK(-):21Kb before exon 6	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.3068-258_c.1283-21018dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : in frame	123676	NA	0	26	10	28
P-0013114-T02-IM6	SOMATIC	LOC101929504	VTCN1	6	1	169564182	117753437	IGR: 11Kb before LOC101929504(-)	Intron of VTCN1(-):8bp after exon 1	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;6)(p13.1;q27)(chr1:g.117753496::chr6:g.169564182)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	32	10	33
P-0013114-T03-IM6	SOMATIC	LOC101929504	VTCN1	6	1	169564182	117753437	IGR: 11Kb before LOC101929504(-)	Intron of VTCN1(-):8bp after exon 1	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;6)(p13.1;q27)(chr1:g.117753496::chr6:g.169564182)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	41	10	43
P-0028287-T01-IM6	SOMATIC	ALK	EML4	2	2	29446661	42505367	Intron of ALK(-):267bp before exon 20	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-2623:EML4_c.3173-267:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058706	NA	0	39	10	39
P-0028289-T01-IM6	SOMATIC	PPM1D	USH2A	17	1	58740285	216077920	Intron of PPM1D(+):70bp before exon 6	Intron of USH2A(-):4Kb before exon 39	GRCh37	TRANSLOCATION	PPM1D (NM_003620) rearrangement: 1;17)(q41;q23.2)(chr1:g.216077920chr17:g.58740285)	PRECISE		MANUAL_OK	5to3	-	0	NA	1	92	10	92
P-0028295-T01-IM6	SOMATIC	MYH9	ROS1	22	6	36691922	117641564	Intron of MYH9(-):159bp before exon 26	Intron of ROS1(-):371bp before exon 36	GRCh37	TRANSLOCATION	MYH9 (NM_002473) - ROS1 (NM_002944) rearrangement: t(6;22)(q22.1;q12.3)(chr6:g.117641564::chr22:g.36691922)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MYH9:ROS1}	0	NA	0	25	10	24
P-0028363-T01-IM6	SOMATIC	XBP1	EWSR1	22	22	29219730	29685319	IGR: 29Kb before XBP1(-)	Intron of EWSR1(+):544bp after exon 9	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.992+544:EWSR1_chr22:g.29219730del.	PRECISE		MANUAL_OK	3to5	-	465589	NA	0	21	10	21
P-0014689-T02-IM6	SOMATIC	TPCN2	FGF3	11	11	68847631	69627422	Intron of TPCN2(+):280bp after exon 17	Intron of FGF3(-):2Kb before exon 3	GRCh37	DELETION	TPCN2 (NM_139075) - FGF3 (NM_005247) rearrangement: c.1589+280:TPCN2_c.325-1954:FGF3del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	779791	NA	0	23	0	23
P-0015989-T02-IM6	SOMATIC	FMN1	NAB2	15	12	33270870	57487945	Intron of FMN1(-):9Kb before exon 4	Intron of NAB2(+):449bp before exon 7	GRCh37	TRANSLOCATION	FMN1 (NM_001103184) - NAB2 (NM_005967) Rearrangement : t(12,15)(q13.3,q13.3)(chr12:g.57487944::chr15:g.33270869)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FMN1:NAB2}	0	NA	0	22	0	42
P-0019948-T02-IM6	SOMATIC	KIT	KIT	4	4	55582117	55598092	Intron of KIT(+):6Kb after exon 7	Exon 16 of KIT(+)	GRCh37	DELETION	KIT (NM_000222) rearrangement: c.1231+6412_c.2289del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15975	NA	0	5	9	5
P-0024872-T01-IM6	SOMATIC	HCN2	BRD4	19	19	587714	15374271	Promoter of HCN2(+):2Kb from tx start	Exon 7 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.1301:BRD4_chr19:g.587714del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	14786557	NA	0	5	10	6
P-0024872-T01-IM6	SOMATIC	FNTA	RECQL4	8	8	42942768	145737558	Promoter of FNTA(+):31Kb from tx start	Exon 19 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.3205:RECQL4_chr8:g.42942768inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FNTA:RECQL4}	102794790	NA	0	55	10	52
P-0027119-T03-IM6	SOMATIC	ALK	EML4	2	2	29446711	42527544	Intron of ALK(-):317bp before exon 20	Intron of EML4(+):836bp before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1316-837:EML4_c.3173-317:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080833	NA	0	188	10	187
P-0027729-T02-IM6	SOMATIC	AXIN2	SDK2	17	17	63533031	71601608	Exon 7 of AXIN2(-)	Intron of SDK2(-):39Kb after exon 1	GRCh37	DUPLICATION	AXIN2 (NM_004655) - SDK2 (NM_001144952) rearrangement: c.1863:AXIN2_c.64+38556:SDK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AXIN2:SDK2}	8068577	NA	0	416	10	601
P-0027998-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120480437	120502169	Intron of NOTCH2(-):42bp after exon 20	Intron of NOTCH2(-):44bp before exon 12	GRCh37	DUPLICATION	NOTCH2 (NM_024408) fusion: c.3337+43_c.1916-44dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	21732	NA	0	48	10	49
P-0028323-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193115001	193172879	Intron of CDC73(+):2Kb before exon 8	Intron of CDC73(+):45bp before exon 11	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.730-1996_c.973-46inv	PRECISE		MANUAL_OK	5to5	-	57878	NA	0	14	10	17
P-0028323-T01-IM6	SOMATIC	LOC100130370	NSD1	17	5	79359229	176720732	Promoter of LOC100130370(-):10Kb from tx start	Intron of NSD1(+):100bp before exon 23	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(5;17)(q35.3;q25.3)(chr5:g.176720732::chr17:g.79359229)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {LOC100130370:NSD1}	0	NA	0	5	10	5
P-0028323-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2177002	2193822	Intron of DOT1L(+):4Kb before exon 2	Intron of DOT1L(+):40bp after exon 6	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.82-3710_c.588+40inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	16820	NA	0	31	10	30
P-0028325-T01-IM6	SOMATIC	CNTN5	KMT2A	11	11	99009835	118390461	5-UTR of CNTN5(+):417Kb before coding start	Exon 32 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.11275:KMT2A_chr11:g.99009835del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CNTN5:KMT2A}	19380626	NA	0	35	10	41
P-0028325-T01-IM6	SOMATIC	ERCC5	LOC283177	13	11	103514093	134346840	Intron of ERCC5(+):29bp after exon 7	5-UTR of LOC283177(+):29Kb before coding start	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) rearrangement: t(11;13)(q25;q33.1)(chr11:g.134346840::chr13:g.103514093)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ERCC5:LOC283177}	0	NA	0	33	10	32
P-0028336-T01-IM6	SOMATIC	MARK2	MAP3K1	11	5	63608257	56178100	Intron of MARK2(+):1Kb after exon 1	Exon 14 of MAP3K1(+)	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) - MARK2 (NM_001039469) rearrangement: t(5;11)(q11.2;q13.1)(chr5:g.56178100::chr11:g.63608257)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAP3K1:MARK2}	0	NA	0	48	10	49
P-0028336-T01-IM6	SOMATIC	CREBBP	EMBP1	16	1	3828753	121485422	Exon 9 of CREBBP(-)	IGR: 225Kb before EMBP1(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(1;16)(p11.2;p13.3)(chr1:g.121485422::chr16:g.3828753)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	19	0	22
P-0028339-T01-IM6	SOMATIC	ALK	EML4	2	2	29447680	42474072	Intron of ALK(-):646bp after exon 19	Intron of EML4(+):1Kb after exon 2	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused with ALK exons 20-29): c.208+1245:EML4_c.3172+647:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13026392	NA	0	97	10	95
P-0028344-T01-IM6	SOMATIC	YAP1	PDE4D	11	5	102056674	58795652	Intron of YAP1(+):74bp before exon 4	Intron of PDE4D(-):284Kb before exon 4	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(5;11)(q11.2;q22.1)(chr5:g.58795652::chr11:g.102056674)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	41	10	41
P-0028344-T01-IM6	SOMATIC	TBX3	MED13L	12	12	115114257	116070739	Exon 6 of TBX3(-)	IGR: 326Kb before MED13L(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.960:TBX3_chr12:g.116070739del	PRECISE		MANUAL_OK	3to5	-	956482	NA	0	79	10	81
P-0028357-T01-IM6	SOMATIC	KMT2D	LINC00615	12	12	49443596	91008964	Exon 11 of KMT2D(-)	IGR: 303Kb before LINC00615(+)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.3775:KMT2D_chr12:g.91008964dup	PRECISE		MANUAL_OK	5to3	-	41565368	NA	0	20	10	20
P-0028357-T01-IM6	SOMATIC	TMEM200A	IFNGR1	6	6	130829525	137525462	IGR: 71Kb before TMEM200A(+)	Intron of IFNGR1(-):6bp after exon 4	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement: c.546+7:IFNGR1_chr6:g.130829525inv	PRECISE		MANUAL_OK	5to5	-	6695937	NA	0	22	10	27
P-0028358-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683984	32416472	Intron of EWSR1(+):610bp before exon 9	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:g.32416472::chr22:g.29683984)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	39	10	38
P-0028405-T01-IM6	SOMATIC	TNFRSF14	CNKSR1	1	1	2493316	26512742	Intron of TNFRSF14(+):62bp after exon 6	Intron of CNKSR1(+):916bp before exon 15	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.694+62_chr1:g.26512742inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	24019426	NA	0	20	10	18
P-0028414-T01-IM6	SOMATIC	RHOV	RIT1	15	1	41171099	155880302	IGR: 7Kb before RHOV(-)	Intron of RIT1(-):5bp before exon 3	GRCh37	TRANSLOCATION	RIT1 (NM_006912) rearrangement: t(1;15)(q22;q15.1)(chr1:g.155880302::chr15:g.41171099)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	90	10	92
P-0006768-T03-IM6	SOMATIC	EGFR	EGFR	7	7	55172827	55223024	Intron of EGFR(+):37Kb before exon 2	Intron of EGFR(+):498bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) Rearrangement : c.89-37152_c.890-499inv	PRECISE		MANUAL_OK	5to5	-	50197	NA	0	23	10	23
P-0007125-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11083179	11098368	5-UTR of SMARCA4(+): 12Kb before coding start	Exon 5 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.-32+11329_c.886del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	15189	NA	0	16	43	15
P-0007125-T01-IM5	SOMATIC	ALK	EML4	2	2	29446597	42528393	Intron of ALK(-): 203bp before exon 20	Exon 13 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-14 with ALK exons 20-29) : c.1328:EML4_c.3173-203:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EML4-ALK)	13081796	NA	0	40	26	38
P-0021045-T02-IM6	SOMATIC	SPATS2	SMARCD1	12	12	49820167	50480134	5-UTR of SPATS2(+):35Kb before coding start	Intron of SMARCD1(+):3bp after exon 2	GRCh37	DUPLICATION	SMARCD1 (NM_003076) - SPATS2 (NM_023071) rearrangement:  c.365+3:SMARCD1_c.-243-34386:SPATS2dup.	PRECISE		MANUAL_OK	5to3	Transcript Fusion {SMARCD1:SPATS2}	659967	NA	0	45	10	49
P-0021177-T02-IM6	SOMATIC	TCF7L2	HABP2	10	10	114918419	115131344	Intron of TCF7L2(+):591bp after exon 12	IGR: 179Kb before HABP2(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.1318+591:TCF7L2_chr10:g.115131344del	PRECISE		MANUAL_OK	3to5	-	212925	NA	0	13	10	13
P-0021177-T02-IM6	SOMATIC	KMT2D	DHH	12	12	49435103	49487152	Exon 31 of KMT2D(-)	Intron of DHH(-):840bp after exon 1	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.6450:KMT2D_chr12:g.49487152del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DHH:KMT2D}	52049	NA	0	48	10	72
P-0021983-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44740630	44929230	Intron of KDM6A(+):7Kb after exon 2	Exon 17 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.225+7397_c.2330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	188600	NA	0	80	10	82
P-0028302-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52443630	52450481	Intron of BAP1(-):6bp before exon 3	Intron of PHF7(+):2Kb after exon 4	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.68-6:BAP1_chr3:g.52450481del	PRECISE		MANUAL_OK	3to5	-	6851	NA	0	71	10	82
P-0028426-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14226460	14628300	Intron of PRKACA(-):2Kb after exon 1	Intron of DNAJB1(-):442bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730)  fusion (DNAJB1 exon 1 fused with PRKACA exons 2-10) : c.212-467:DNAJB1_c.46+2682:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	401840	NA	0	23	10	23
P-0028430-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876653	42873954	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10).	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997301	NA	0	5	10	5
P-0028432-T01-IM6	SOMATIC	NF1	NF1	17	17	29579836	29586497	Intron of NF1(+):119bp before exon 31	Intron of NF1(+):350bp after exon 33	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4111-120_c.4430+350dup.	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6661	NA	0	17	10	17
P-0028433-T01-IM6	SOMATIC	NOTCH3	AKAP8	19	19	15288546	15441551	Exon 24 of NOTCH3(-)	IGR: 23Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4193:NOTCH3_chr19:g.15441551del	PRECISE		MANUAL_OK	3to5	-	153005	NA	0	15	10	15
P-0028435-T01-IM6	SOMATIC	TP53	TBC1D22B	17	6	7577967	37234090	Intron of TP53(-):209bp after exon 6	Intron of TBC1D22B(+):3Kb before exon 2	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;6)(p13.1;p21.2)(chr17:g.7577967::chr6:g.37234090) (Note)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TP53:TBC1D22B}	0	NA	0	68	10	71
P-0028470-T01-IM6	SOMATIC	ARID2	MON2	12	12	46123990	62883515	Intron of ARID2(+):70bp after exon 2	Intron of MON2(+):4Kb before exon 3	GRCh37	DELETION	ARID2 (NM_152641) - MON2 (NM_015026) rearrangement: c.186+70:ARID2_c.176-4180del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ARID2:MON2}	16759525	NA	0	13	10	14
P-0000257-T01-IM3	SOMATIC	EWSR1	WT1	22	11	29684500	32416165	Intron of EWSR1(+): 95bp before exon 7	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	25	33	23
P-0003052-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875748	42872062	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-3 fused with ERG exons 4-11): c.56-1945:TMPRSS2_c.40-58204:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996314	NA	0	39	10	42
P-0003132-T01-IM5	SOMATIC	MLL2	MLL2	12	12	49413356	49446690	3-UTR of MLL2(-): 2Kb after coding stop	Intron of MLL2(-): 8bp after exon 8	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	33334	NA	0	27	43	29
P-0003233-T05-IM6	SOMATIC	SLIT3	FGFR4	5	5	168403446	176519595	Intron of SLIT3(-):93Kb before exon 5	Intron of FGFR4(+):51bp before exon 8	GRCh37	DUPLICATION	FGFR4 (NM_213647) rearrangement: c.919-52:FGFR4_chr5:g.168403446dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	8116149	NA	0	21	10	23
P-0003595-T02-IM6	SOMATIC	TP53	TP53	17	17	7576451	7577694	Intron of TP53(-):401bp after exon 9	Intron of TP53(-):86bp before exon 7	GRCh37	INVERSION	TP53 (NM_000546) Rearrangement: c.993+402_c.673-86inv	PRECISE		MANUAL_OK	3to3	-	1243	NA	0	3	7	3
P-0004094-T02-IM6	SOMATIC	KIAA1468	RET	18	10	59909399	43610279	Intron of KIAA1468(+):3Kb before exon 11	Intron of RET(+):95bp after exon 11	GRCh37	TRANSLOCATION	KIAA1468 (NM_020854) - RET (NM_020975) fusion (KIAA1468 exons 1-10 fused with RET exons 12-20): t(10;18)(q11.21;q21.33)(chr10:g.43610279::chr18:g.59909399)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KIAA1468:RET}	0	NA	0	53	10	54
P-0004756-T02-IM6	SOMATIC	KMT2D	WHSC1L1	12	8	49425873	38151870	Exon 39 of KMT2D(-)	Intron of WHSC1L1(-):1Kb after exon 16	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - WHSC1L1 (NM_018013) rearrangement: t(8;12)(p11.22;q13.12)(chr8:g.38151870::chr12:g.32312089)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2D:WHSC1L1}	0	NA	0	173	10	181
P-0004756-T02-IM6	SOMATIC	KMT2D	ARFGEF1	12	8	49425875	68111283	Exon 39 of KMT2D(-)	Exon 39 of ARFGEF1(-)	GRCh37	TRANSLOCATION	ARFGEF1 (NM_006421) - KMT2D (NM_003482) rearrangement: t(8;12)(q13.2;q13.12)(chr8:g.68111283::chr12:g.49425875)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARFGEF1:KMT2D}	0	NA	0	54	10	56
P-0004756-T02-IM6	SOMATIC	DOCK9	IRS2	13	13	99637943	110435863	Intron of DOCK9(-):30Kb before exon 2	Exon 1 of IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) - DOCK9 (NM_015296) rearrangement: c.2538:IRS2_c.130-30138:DOCK9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {IRS2:DOCK9}	10797920	NA	0	100	10	105
P-0004937-T02-IM6	SOMATIC	ATM	C11orf65	11	11	108235970	108252191	Intron of ATM(+):25bp after exon 62	Promoter of C11orf65(-):2Kb from tx start	GRCh37	DELETION	ATM (NM_000051) - C11orf65 (NM_152587) rearrangement : c.8987+25:ATM_c.*1558:C11orf65del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	16221	NA	0	58	10	61
P-0004937-T02-IM6	SOMATIC	RTEL1	HAVCR1P1	20	19	62303901	24531369	Intron of RTEL1(+):7bp before exon 9	IGR: 186Kb before HAVCR1P1(-)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(19;20)(p11;q13.33)(chr19:g.24531369::chr20:g.62303901)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	162	10	194
P-0004937-T03-IM6	SOMATIC	ATM	C11orf65	11	11	108235970	108252191	Intron of ATM(+):25bp after exon 62	Promoter of C11orf65(-):2Kb from tx start	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.8987+25:ATM_chr11:g.108252191del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	16221	NA	0	47	10	50
P-0004937-T03-IM6	SOMATIC	RTEL1	HAVCR1P1	20	19	62303901	24531369	Intron of RTEL1(+):7bp before exon 9	IGR: 186Kb before HAVCR1P1(-)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(19;20)(p13.13;q13.33)(chr19:g.24531369::chr20:g.62303901)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	147	10	160
P-0005297-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29684524	128658433	Intron of EWSR1(+):70bp before exon 9	Intron of FLI1(+):7Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)  - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 with FLI1 exons 6-9): t(22;11)(22q12.2;11q24.3 )(chr22:g.29684524::chr11:g.128658433)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	179	10	190
P-0005502-T03-IM6	SOMATIC	RB1	RB1	13	13	48937218	49026023	Intron of RB1(+):125bp after exon 8	Intron of RB1(+):1Kb before exon 18	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.861+125_c.1696-1106del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	88805	NA	0	3	10	2
P-0008082-T01-IM5	SOMATIC	BRCA2	BRCA2	13	13	32913437	32915377	Exon 11 of BRCA2(+)	Intron of BRCA2(+): 44bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.4945_c.6841+44del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1940	NA	0	19	33	19
P-0008525-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862262	42869424	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):621bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 with ERG exons 2-10): c.126+622:TMPRSS2_c.40-44718:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007162	NA	0	121	10	126
P-0008525-T02-IM6	SOMATIC	CNTRL	SETD2	9	3	123913096	47162787	Intron of CNTRL(+):335bp after exon 23	Exon 3 of SETD2(-)	GRCh37	TRANSLOCATION	CNTRL (NM_007018) - SETD2 (NM_014159) rearrangement: t(3;9)(p21.31;q33.2)(chr3:g.47162787::chr9:g.123913096)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CNTRL:SETD2}	0	NA	0	52	10	52
P-0008712-T02-IM6	SOMATIC	LINGO2	PAX5	9	9	29168846	36923292	5-UTR of LINGO2(-):1Mb before coding start	Intron of PAX5(-):59bp after exon 7	GRCh37	DELETION	PAX5 (NM_016734) rearrangement: c.910+60_chr9:g.29168846del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {PAX5:LINGO2}	7754446	NA	0	59	10	59
P-0008960-T02-IM6	SOMATIC	CDK12	HTR1E	17	6	37646977	87697113	Exon 3 of CDK12(+)	5-UTR of HTR1E(+):28Kb before coding start	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - HTR1E (NM_000865)  rearrangement: t(6;17)(q14.3;q12)(chr6:g.87697113::chr17:g.37646977)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDK12:HTR1E}	0	NA	0	42	10	43
P-0008960-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885570	42867650	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 and 2 fused with ERG exons 4 to 11): c.127-1145:TMPRSS2_c.39+62016:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2982080	NA	0	35	10	37
P-0008960-T02-IM6	SOMATIC	TERT	CDH6	5	5	1295316	30794050	Promoter of TERT(-):42Kb from tx start	IGR: 400Kb before CDH6(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-212_chr5:g.30794050del	IMPPRECISE		MANUAL_OK	3to5	-	29498734	NA	0	22	0	27
P-0009261-T02-IM6	SOMATIC	GNAS	CEP112	20	17	57485137	64024466	Intron of GNAS(+):1bp after exon 11	Exon 13 of CEP112(-)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(17;20)(q24.1;q13.32)(chr17:g.64024466::chr20:g.57485137)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	17	0	15
P-0009687-T02-IM6	SOMATIC	TP53	SPG11	17	15	7579209	44943474	Intron of TP53(-):102bp after exon 4	Intron of SPG11(-):214bp after exon 6	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(15;17)(q21.1;p13.1)(chr15:g.44943476::chr17:g.7579206)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	46	10	47
P-0009687-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864271	42876698	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+3180:TMPRSS2_c.18+6016:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3012427	NA	0	52	10	54
P-0009687-T02-IM6	SOMATIC	DGCR5	EP300	22	22	18946332	41574510	IGR: 12Kb before DGCR5(+)	Exon 31 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.6795:EP300_chr22:g.18946332dup	PRECISE		MANUAL_OK	5to3	-	22628178	NA	0	25	10	39
P-0010082-T01-IM5	SOMATIC	GSK3B	KCNH1	3	1	119812087	211048481	Intron of GSK3B(-): 107bp after exon 1	Intron of KCNH1(-): 45Kb after exon 7	GRCh37	TRANSLOCATION	GSK3B (NM_002093) - KCNH1 (NM_172362) rearrangement: t(1;3)(q32.2;q13.33)(chr1:g.211048481::chr3:g.119812087 )	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (GSK3B-KCNH1)	0	NA	0	37	0	36
P-0010977-T02-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48895466	79959249	Intron of TFE3(-):68bp after exon 5	Intron of ASPSCR1(+):5Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused to TFE3 exons 6-10) : t(X;17)(p11.23;q25.3)(chrX:g.48895466::chr17:g.79959249)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	49	10	49
P-0011544-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55194888	55222316	Intron of EGFR(+):15Kb before exon 2	Intron of EGFR(+):471bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-15091_c.889+471del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	27428	NA	0	231	10	2539
P-0012695-T01-IM5	SOMATIC	TMPRSS2	DENND3	21	8	42873872	142204112	Intron of TMPRSS2(-): 4Kb before exon 2	Intron of DENND3(+): 20bp before exon 23	GRCh37	TRANSLOCATION	DENND3 - TMPRSS2 rearrangement: t(8;21)(q24.3;q22.3)(chr8:g.142204112::chr21:g.42873872)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (DENND3-TMPRSS2)	0	NA	0	40	34	40
P-0012778-T02-IM6	SOMATIC	ALK	EML4	2	2	29447442	42493191	Intron of ALK(-):884bp after exon 19	Intron of EML4(+):1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.493+1320:EML4_c.3172+885:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13045749	NA	0	47	10	46
P-0013120-T04-IM6	SOMATIC	LOC101929608	SMARCA4	20	19	21683099	11144102	3-UTR of LOC101929608(-):1Kb after coding stop	Exon 26 of SMARCA4(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(19;20)(p13.2;p11.22)(chr19:g.11144102::chr20:g.21683099)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	8
P-0013719-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55270003	55274499	Intron of EGFR(+):206bp before exon 27	3-UTR of EGFR(+):188Kb after coding stop	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3163-207:EGFR_chr7:g.55274499del	PRECISE		MANUAL_OK	3to5	-	4496	NA	0	50	10	50
P-0013755-T02-IM6	SOMATIC	ERBB2	IKZF3	17	17	37866491	37925075	Intron of ERBB2(+):37bp after exon 6	Intron of IKZF3(-):2Kb before exon 7	GRCh37	DUPLICATION	ERBB2 (NM_004448) Rearrangement :  c.759+36:ERBB2_c.827-2329:IKZF3	PRECISE		MANUAL_OK	5to3	-	58584	NA	0	6	10	6
P-0013934-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139388760	139402699	Promoter of NOTCH1(-):135bp from tx start	Exon 20 of NOTCH1(-)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.*1763_c.3310inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	13939	NA	0	67	10	97
P-0014576-T02-IM6	SOMATIC	DNAH9	MAP2K4	17	17	11611081	12044545	Intron of DNAH9(+):3Kb after exon 26	Exon 11 of MAP2K4(+)	GRCh37	INVERSION	DNAH9 (NM_001372) - MAP2K4 (NM_003010) rearrangement: c.5552+2579:DNAH9_c.1168:MAP2K4inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	433464	NA	0	39	10	39
P-0015059-T02-IM6	SOMATIC	NCOR1	LOC254028	17	14	15976930	21071818	Intron of NCOR1(-):47bp before exon 28	5-UTR of LOC254028(+):4Kb before coding start	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(14;17)(q11.2;p12)(chr14:g.21071818::chr17:g.15976930)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0015116-T04-IM6	SOMATIC	ZFP42	PIK3CB	4	3	188952534	138456698	IGR: 36Kb before ZFP42(+)	Exon 4 of PIK3CB(-)	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;4)(q22.3;q35.2)(chr3:g.138456698::chr4:g.188952534)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	17	10	24
P-0016178-T02-IM6	SOMATIC	KMT2D	CTDSP2	12	12	49434741	58235404	Exon 31 of KMT2D(-)	Intron of CTDSP2(-):5Kb after exon 1	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.6812:KMT2D_chr12:g.58235404inv	PRECISE		MANUAL_OK	3to3	-	8800663	NA	0	368	10	375
P-0017365-T03-IM6	SOMATIC	RET	CCDC6	10	10	43611464	61640379	Intron of RET(+):567bp before exon 12	Intron of CCDC6(-):26Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.303+25501:CCDC6_c.2137-568:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18028915	NA	0	36	10	46
P-0017365-T03-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18540068	18552482	Intron of PIK3C2G(+):4Kb before exon 14	Intron of PIK3C2G(+):110bp before exon 15	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1873-3988_c.2004-111del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	12414	NA	0	9	8	9
P-0017365-T03-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21968256	22143651	Intron of CDKN2A(-):15bp before exon 3	IGR: 141Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-15_chr9:g.22143651del	PRECISE		MANUAL_OK	3to5	-	175395	NA	0	6	8	7
P-0017472-T02-IM6	SOMATIC	EP300	EP300	22	22	41533489	41556631	Intron of EP300(+):167bp before exon 8	Intron of EP300(+):14bp before exon 20	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.1623-168_c.3591-15del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	23142	NA	0	42	10	45
P-0017892-T02-IM6	SOMATIC	PTK2B	RECQL4	8	8	27181977	145741293	5-UTR of PTK2B(+):73Kb before coding start	Intron of RECQL4(-):19bp before exon 6	GRCh37	DELETION	RECQL4 (NM_004260) rearrangement: c.1132-19:RECQL4_chr8:g.27181977	PRECISE		MANUAL_OK	3to5	Antisense Fusion	118559316	NA	0	79	10	79
P-0017892-T02-IM6	SOMATIC	GPR82	KDM6A	X	X	41864000	44910990	IGR: 281Kb before GPR82(+)	Exon 9 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.691:KDM6A_chrX:g.41864000del	IMPPRECISE		MANUAL_OK	3to5	-	3046990	NA	0	12	0	18
P-0018046-T02-IM6	SOMATIC	LATS1	LATS1	6	6	149996431	149997679	Intron of LATS1(-):964bp after exon 7	Intron of LATS1(-):11bp after exon 6	GRCh37	DELETION	LATS1 (NM_004690) Rearrangement: c.2883+965_c.2776+12del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1248	NA	0	3	4	3
P-0018317-T02-IM6	SOMATIC	ARID1A	ZSCAN20	1	1	27101055	33947456	Exon 18 of ARID1A(+)	Intron of ZSCAN20(+):2Kb after exon 2	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.4337:ARID1A_chr1:g.33947456inv.	PRECISE		MANUAL_OK	3to3	Antisense Fusion	6846401	NA	0	11	10	11
P-0018583-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48604770	48624100	Exon 12 of SMAD4(+)	IGR: 68Kb before SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1592:SMAD4_chr18:g.48624100del	PRECISE		MANUAL_OK	3to5	-	19330	NA	0	99	10	105
P-0019246-T03-IM6	SOMATIC	SMARCA4	LOC100287015	19	8	11100157	5383702	Intron of SMARCA4(+):38bp after exon 7	IGR: 877Kb before LOC100287015(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(8;19)(p23.2;p13.2)(chr8:g.5383702::chr19:g.11100157)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	61	10	62
P-0019246-T03-IM6	SOMATIC	EZH2	EZH2	7	7	148524314	148538709	Exon 7 of EZH2(-)	Intron of EZH2(-):5Kb after exon 3	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.670_c.246+4853del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14395	NA	0	35	10	41
P-0019543-T01-IM6	SOMATIC	NF1	NF1	17	17	29579903	29586684	Intron of NF1(+):52bp before exon 31	Intron of NF1(+):537bp after exon 33	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement : c.4111-53_c.4430+537dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6781	NA	0	24	10	28
P-0019543-T01-IM6	SOMATIC	NPR2	NOTCH1	9	9	35791226	139411759	Promoter of NPR2(+):1Kb from tx start	Exon 9 of NOTCH1(-)	GRCh37	INVERSION	NOTCH1 (NM_017617) - NPR2 (NM_003995) Rearrangement: c.1520:NOTCH1_c.-1180:NPR2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH1:NPR2}	103620533	NA	0	30	10	40
P-0019854-T02-IM6	SOMATIC	ABHD17A	DOT1L	19	19	1867094	2164257	IGR: 10Kb before ABHD17A(-)	Exon 1 of DOT1L(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) rearrangement:  chr19:g.1867094_c.74dup	PRECISE		MANUAL_OK	5to3	-	297163	NA	0	5	9	5
P-0020076-T03-IM6	SOMATIC	EZH1	LINC00854	17	17	40857060	41403032	Intron of EZH1(-):45bp after exon 17	IGR: 30Kb before LINC00854(-)	GRCh37	INVERSION	EZH1 (NM_001991) rearrangement: c.1935+46:EZH1_chr17:g.41403032inv	PRECISE		MANUAL_OK	5to5	-	545972	NA	0	7	9	7
P-0020080-T02-IM6	SOMATIC	GATA3	GATA3	10	10	8112508	8115833	Intron of GATA3(+):947bp after exon 5	Exon 6 of GATA3(+)	GRCh37	DELETION	GATA3 (NM_002051) rearrangement: c.1047+947_c.1179del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3325	NA	0	28	10	28
P-0020138-T01-IM6	SOMATIC	ALK	EML4	2	2	29447907	42504974	Intron of ALK(-):419bp after exon 19	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20 -29): c.668-3016:EML4_c.3172+420:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13057067	NA	0	10	10	16
P-0020223-T02-IM6	SOMATIC	NF1	BCAS3	17	17	29556578	59403901	Intron of NF1(+):95bp after exon 21	Intron of BCAS3(+):42Kb before exon 24	GRCh37	DELETION	NF1 (NM_001042492) - BCAS3 (NM_001099432) rearrangement: c.2850+95:NF1_c.2471-41787:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NF1:BCAS3}	29847323	NA	0	7	10	8
P-0020290-T01-IM6	SOMATIC	APC	SRP19	5	5	112175749	112194235	Exon 16 of APC(+)	Promoter of SRP19(+):3Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4458_chr5:g.112194235inv	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	18486	NA	0	17	10	18
P-0020344-T02-IM6	SOMATIC	TBX3	LOC285627	12	5	115117863	159028999	Intron of TBX3(-):86bp before exon 3	IGR: 153Kb before LOC285627(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(5;12)(q33.3;q21.24)(chr5:g.159028999::chr12:g.115117863)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0020766-T01-IM6	SOMATIC	RTEL1	LOC401177	20	5	62322308	18137294	Intron of RTEL1(+):8bp after exon 27	IGR: 758Kb before LOC401177(-)	GRCh37	TRANSLOCATION	RTEL (NM_032957) - rearrangement: t(5,20)(p14.3,q13.33)(chr5:g.18137294::chr20:g.62322308)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	258	10	349
P-0020868-T02-IM6	SOMATIC	NF1	NF1	17	17	29557177	29559733	Intron of NF1(+):100bp before exon 23	Exon 26 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2991-101_c.3330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2556	NA	0	52	10	59
P-0020868-T02-IM6	SOMATIC	E2F3	HDGFL1	6	6	20487044	22511512	Intron of E2F3(+):10bp after exon 5	IGR: 58Kb before HDGFL1(+)	GRCh37	INVERSION	E2F3 (NM_001949) rearrangement: c.999+10:E2F3_chr6:g.22511512inv	PRECISE		MANUAL_OK	5to5	-	2024468	NA	0	15	10	17
P-0020900-T04-IM6	SOMATIC	SMARCD1	LIMA1	12	12	50488267	50674903	Exon 10 of SMARCD1(+)	5-UTR of LIMA1(-):104Kb before coding start	GRCh37	INVERSION	SMARCD1 (NM_003076) - LIMA1(NM_001113546) rearrangement: c.1181:SMARCD1_c.-24+2300:LIMA1del	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMARCD1:LIMA1}	186636	NA	0	57	10	57
P-0021330-T02-IM6	SOMATIC	ASXL1	DNMT3B	20	20	31003092	31386287	Intron of ASXL1(+):13Kb before exon 4	Exon 15 of DNMT3B(+)	GRCh37	DUPLICATION	NoneDNMT3B (NM_006892) - ASXL1 (NM_015338) rearrangement: c.1512:DNMT3B_c.253-12839:ASXL1	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3B:ASXL1}	383195	NA	0	3	10	3
P-0021693-T01-IM6	SOMATIC	ALK	EML4	2	2	29447002	42526872	Intron of ALK(-):608bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) Fusion (EML4 exons 1-14 fused with ALK exons 20-29): c.1316-1509:EML4_c.3173-608:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079870	NA	0	99	10	112
P-0022100-T03-IM6	SOMATIC	FOLR3	INPPL1	11	11	71834974	71948065	IGR: 12Kb before FOLR3(+)	Intron of INPPL1(+):102bp before exon 26	GRCh37	DELETION	INPPL1 (NM_001567) Rearrangement: c.2880-103:INPPL1_g.71834974del	PRECISE		MANUAL_OK	3to5	-	113091	NA	0	8	10	8
P-0022101-T01-IM6	SOMATIC	ALK	EML4	2	2	29447759	42544057	Intron of ALK(-):567bp after exon 19	Intron of EML4(+):509bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon18 fused with ALK exon 20): c.2057-510:EML4_c.2057-510:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13096298	NA	0	15	10	13
P-0022521-T02-IM6	SOMATIC	MGA	ARPP19	15	15	42032110	52842861	Intron of MGA(+):140bp before exon 14	3-UTR of ARPP19(-):1Kb after coding stop	GRCh37	INVERSION	MGA (NM_001164273) rearrangement : c.4435-141:MGA_chr15:g.52842861inv	PRECISE		MANUAL_OK	5to5	-	10810751	NA	0	22	10	27
P-0022530-T02-IM6	SOMATIC	NOTCH3	AKAP8	19	19	15281561	15437650	Exon 26 of NOTCH3(-)	IGR: 27Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4812:NOTCH3_chr19:g.15437650del	PRECISE		MANUAL_OK	3to5	-	156089	NA	0	12	10	11
P-0023156-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52712343	52719394	Intron of PBRM1(-):172bp after exon 3	5-UTR of PBRM1(-):137Kb before coding start	GRCh37	INVERSION	PBRM1 (NM_018313) Rearrangement : c.-13+371_c.236+173inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7051	NA	0	4	9	4
P-0023771-T02-IM6	SOMATIC	TSC2	ZC3H7A	16	16	2111895	11886752	Exon 12 of TSC2(+)	5-UTR of ZC3H7A(-):42Kb before coding start	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1143_chr16:g.11886752del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	9774857	NA	0	62	10	62
P-0023771-T02-IM6	SOMATIC	TMIGD2	CIC	19	19	4293516	42790931	Intron of TMIGD2(-):634bp before exon 5	Exon 2 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: chr19:g.4293516_c.76del	PRECISE		MANUAL_OK	3to5	-	38497415	NA	0	67	10	73
P-0023771-T02-IM6	SOMATIC	ATP4A	CIC	19	19	36054198	42794647	Intron of ATP4A(-):28bp before exon 3	Exon 10 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) - ATP4A (NM_000704) rearrangement: c.1727_c.157-28inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:ATP4A}	6740449	NA	0	44	10	44
P-0024200-T02-IM6	SOMATIC	STK11	STK11	19	19	1202435	1219125	IGR: 3Kb before STK11(+)	Intron of STK11(+):197bp before exon 3	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.375-198:STK11_chr19:g.1202435del	PRECISE		MANUAL_OK	3to5	-	16690	NA	0	4	7	4
P-0024229-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098972	178102197	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement:  c.46-3198_c.73del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3225	NA	0	15	10	16
P-0024309-T01-IM6	SOMATIC	RTN4RL2	MRE11A	11	11	57242231	94192597	Intron of RTN4RL2(+):1Kb before exon 3	Exon 13 of MRE11A(-)	GRCh37	INVERSION	MRE11A (NM_005591) - RTN4RL2 (NM_178570) rearrangement: c.1477:MRE11A_c.514-1404:RTN4RL2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MRE11A:RTN4RL2}	36950366	NA	0	19	10	28
P-0024631-T02-IM6	SOMATIC	KMT2D	KRT86	12	12	49447056	52691392	Exon 7 of KMT2D(-)	IGR: 4Kb before KRT86(+)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.888:KMT2D_chr12:g.52691392inv	PRECISE		MANUAL_OK	3to3	-	3244336	NA	0	17	10	17
P-0024631-T02-IM6	SOMATIC	ATP1B2	TP53	17	17	7554166	7579903	Promoter of ATP1B2(+):87bp from tx start	Exon 2 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.10del:TP53_chr17:g.7554166	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25737	NA	0	10	10	10
P-0024631-T03-IM6	SOMATIC	ATP1B2	TP53	17	17	7554166	7579903	Promoter of ATP1B2(+):87bp from tx start	Exon 2 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.10_chr17:g.7554166del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25737	NA	0	9	10	9
P-0024869-T01-IM6	SOMATIC	MGA	TEX9	15	15	42058764	56553582	Exon 24 of MGA(+)	IGR: 104Kb before TEX9(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.8484_chr15:g.56553582del	IMPPRECISE		MANUAL_OK	3to5	-	14494818	NA	0	6	0	6
P-0025100-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314237	43611511	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):520bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1726-2273:KIF5B_c.2137-521:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297274	NA	0	24	10	36
P-0025349-T03-IM6	SOMATIC	RET	CCDC6	10	10	43611986	61622498	Intron of RET(+):45bp before exon 12	Intron of CCDC6(-):10Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion ( CCDC6 exon 1 fused to RET exons 12-20): c.304-10038:CCDC6_c.2137-46:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18010512	NA	0	2	10	2
P-0025561-T03-IM6	SOMATIC	BRAF	AGK	7	7	140498719	141256169	Intron of BRAF(-):1Kb after exon 7	Intron of AGK(+):802bp after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion (AGK exons 1-2 fused to BRAF exons 8-18): c.980+1288:BRAF_c.101+772:AGKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	757450	NA	0	6	0	6
P-0027006-T03-IM6	SOMATIC	NTRK3	ETV6	15	12	88512343	12032352	Intron of NTRK3(-):28Kb before exon 15	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12037037::chr15:g.88514531)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	151	10	144
P-0027006-T04-IM6	SOMATIC	NTRK3	ETV6	15	12	88512343	12032352	Intron of NTRK3(-):28Kb before exon 15	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused with NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12032352::chr15:g.88512343)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	97	10	96
P-0027363-T02-IM6	SOMATIC	ALK	RANBP2	2	2	29447364	109377001	Intron of ALK(-):962bp after exon 19	Intron of RANBP2(+):2Kb before exon 19	GRCh37	INVERSION	RANBP2 (NM_006267) - ALK (NM_004304) rearrangement: c.2603-1556:RANBP2_c.3172+963:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RANBP2:ALK}	79929637	NA	0	9	10	14
P-0027935-T02-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55136711	55138870	Intron of PDGFRA(+):88bp before exon 8	Intron of PDGFRA(+):183bp after exon 9	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1122-89_c.1364+183del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2159	NA	0	47	10	53
P-0028166-T01-IM6	SOMATIC	FGF8	SUFU	10	10	103512655	104386877	IGR: 17Kb before FGF8(-)	Intron of SUFU(+):54bp before exon 11	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.1297-55_g.103512655del	PRECISE		MANUAL_OK	3to5	-	874222	NA	0	4	8	4
P-0028166-T01-IM6	SOMATIC	ATRX	MAGT1	X	X	76912154	77074225	Intron of ATRX(-):11bp before exon 13	IGR: 8Kb before MAGT1(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.4121-11_g.77074225del	PRECISE		MANUAL_OK	3to5	-	162071	NA	0	53	10	55
P-0028361-T01-IM6	SOMATIC	GLI1	YEATS4	12	12	57860248	69755762	Intron of GLI1(+):76bp after exon 8	Intron of YEATS4(+):805bp before exon 2	GRCh37	DELETION	GLI1 (NM_005269) - YEATS4 (NM_006530) rearrangement: c.912+76:GLI1_c.52-806:YEATS4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GLI1:YEATS4}	11895514	NA	0	5	10	5
P-0028392-T02-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29688636	46333035	Intron of EWSR1(+):41bp after exon 12	Intron of CREB3L1(+):295bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) fusion (EWSR1 exons 1-12 fused to CREB3L1 exons 6-12): t(11;22)(p11.2;q12.2)(chr11:g.46333035::chr22:g.29688636)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB3L1}	0	NA	0	121	10	165
P-0028420-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27072965	27089379	Intron of ARID1A(+):14Kb after exon 4	Intron of ARID1A(+):84bp before exon 8	GRCh37	DELETION	ARID1A  (NM_006015) rearrangement: c.1920+13682_c.2420-85del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	16414	NA	0	6	0	6
P-0028453-T01-IM6	SOMATIC	TEK	TEK	9	9	27206624	27212474	Exon 15 of TEK(+)	Intron of TEK(+):230bp before exon 17	GRCh37	DUPLICATION	TEK (NM_000459) rearrangement: c.2409_c.2687-231dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5850	NA	0	20	10	20
P-0028456-T01-IM6	SOMATIC	EP300	EP300	22	22	41556716	41559049	Exon 20 of EP300(+)	Intron of EP300(+):266bp after exon 21	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3661_c.3728+266del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2333	NA	0	4	10	4
P-0028513-T01-IM6	SOMATIC	MALT1	SEC11C	18	18	56363624	56805185	Exon 3 of MALT1(+)	Promoter of SEC11C(+):2Kb from tx start	GRCh37	DUPLICATION	MALT1 (NM_006785) rearrangement: c.403:MALT1_g.56805185dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC11C:MALT1}	441561	NA	0	50	10	53
P-0028516-T01-IM6	SOMATIC	ZNF564	ARID1A	19	1	12639615	27094395	Intron of ZNF564(-):105bp before exon 2	Exon 11 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;19)(p36.12;p13.2)(chr1:g.27094395::chr19:g.12639615)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	21
P-0028516-T01-IM6	SOMATIC	RAD21	ENAH	8	1	117870582	225658395	Intron of RAD21(-):8bp after exon 5	IGR: 16Kb before ENAH(-)	GRCh37	TRANSLOCATION	RAD21 (NM_006265) rearrangement: t(1;8)(q42.11;q24.11)(chr1:g.225658395::chr8:g.117870582)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	18
P-0028541-T01-IM6	SOMATIC	ALK	EML4	2	2	29446922	42477458	Intron of ALK(-):528bp before exon 20	Intron of EML4(+):5Kb after exon 2	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused with ALK exons 20-29): c.208+4631:EML4_c.3173-528:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13030536	NA	0	213	10	212
P-0028548-T01-IM6	SOMATIC	CBFB	CBFB	16	16	67063723	67082365	Intron of CBFB(+):7bp after exon 2	Intron of CBFB(+):12Kb after exon 3	GRCh37	DELETION	CBFB (NM_022845) rearrangement: c.165+7_c.282+11707del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	18642	NA	0	52	0	58
P-0028548-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176654747	176709332	Intron of NSD1(+):8Kb before exon 6	Intron of NSD1(+):133bp before exon 19	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.3797-8075_c.5893-134del	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	54585	NA	0	5	9	6
P-0028550-T01-IM6	SOMATIC	MEN1	LOC283177	11	11	64572092	134694477	Exon 10 of MEN1(-)	IGR: 388Kb before LOC283177(+)	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.1562:MEN1_chr11:g.134694477inv	PRECISE		MANUAL_OK	3to3	-	70122385	NA	1	118	10	118
P-0028550-T01-IM6	SOMATIC	BRCA1	MED13	17	17	41223065	60123040	Exon 15 of BRCA1(-)	Intron of MED13(-):7Kb after exon 3	GRCh37	DELETION	MED13 (NM_005121) - BRCA1 (NM_007294) rearrangement: c.470+6858:MED13_c.4866:BRCA1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MED13:BRCA1}	18899975	NA	0	2	8	2
P-0028551-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871850	42872253	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-2137:TMPRSS_c.40-54306:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3000403	NA	0	80	10	87
P-0028569-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39906787	42871144	Intron of ERG(-):41Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 2 fused with ERG exons 4-10): c.56-1028:TMPRSS2_c.39+40799:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2964357	NA	0	77	10	83
P-0028570-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49440152	49447473	Exon 16 of KMT2D(-)	Intron of KMT2D(-):49bp before exon 6	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.674-49_c.4474dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7321	NA	0	21	10	23
P-0028570-T01-IM6	SOMATIC	RBMS2	POLE	12	12	56932702	133201418	Intron of RBMS2(+):17Kb after exon 1	Intron of POLE(-):22bp before exon 49	GRCh37	INVERSION	RBMS2 (NM_002898) - POLE (NM_006231) rearrangement: c.66+16829: RBMS2_c.6748-22:POLEinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBMS2:POLE}	76268716	NA	0	79	10	79
P-0028572-T02-IM6	SOMATIC	MRE11A	SESN3	11	11	94203753	94965196	Exon 9 of MRE11A(-)	Promoter of SESN3(-):67Kb from tx start	GRCh37	INVERSION	MRE11A (NM_005591) rearrangement: c.901:MRE11A_chr11:g.94965196inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	761443	NA	0	10	10	13
P-0028576-T01-IM6	SOMATIC	NRG1	WHSC1L1	8	8	32505812	38156883	Exon 1 of NRG1(+)	Intron of WHSC1L1(-):78bp after exon 15	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.2758+79:WHSC1L1_chr8:g.32505812del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5651071	NA	0	42	10	43
P-0028576-T02-IM6	SOMATIC	NRG1	WHSC1L1	8	8	32505812	38156883	Exon 1 of NRG1(+)	Intron of WHSC1L1(-):78bp after exon 15	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.2758+79:WHSC1L1_chr8:g.32505812del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5651071	NA	0	34	10	34
P-0028582-T01-IM6	SOMATIC	TOB2	SH2B3	22	12	41815856	111885072	IGR: 14Kb before TOB2(-)	Intron of SH2B3(+):49bp after exon 5	GRCh37	TRANSLOCATION	SH2B3 (NM_005475) rearrangement: t(12;22)(q24.12;q13.2)(chr12:g.111885072::chr22:g.41815856)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	30
P-0028587-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863736	42871201	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.-56-1085:TMPRSS2_c.18+6551:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007465	NA	0	15	10	14
P-0028599-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36164636	36165959	Exon 9 of RUNX1(-)	Intron of RUNX1(-):1Kb before exon 9	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.968-1052_c.1239dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1323	NA	0	131	10	176
P-0028599-T01-IM6	SOMATIC	PPAPDC1B	WHSC1L1	8	8	38127603	38133870	Promoter of PPAPDC1B(-):5Kb from tx start	Exon 23 of WHSC1L1(-)	GRCh37	DUPLICATION	WHSC1L1 (NM_023034) rearrangement: chr8:g.:38127603_c.4016dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PPAPDC1B:WHSC1L1}	6267	NA	0	14	10	14
P-0028599-T03-IM6	SOMATIC	RUNX1	RUNX1	21	21	36164636	36165959	Exon 9 of RUNX1(-)	Intron of RUNX1(-):1Kb before exon 9	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.968-1052_c.1239dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1323	NA	0	23	10	24
P-0028599-T04-IM6	SOMATIC	RUNX1	RUNX1	21	21	36164636	36165959	Exon 9 of RUNX1(-)	Intron of RUNX1(-):1Kb before exon 9	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.968-1052_c.1239dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1323	NA	0	12	10	13
P-0028601-T01-IM6	SOMATIC	SHROOM4	KDM5C	X	X	50303622	53249995	IGR: 31Kb before SHROOM4(-)	Intron of KDM5C(-):25bp after exon 2	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: chrX:g.50303622_c.228+26del	PRECISE		MANUAL_OK	3to5	-	2946373	NA	0	20	10	21
P-0028611-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138541164	140482786	Intron of KIAA1549(-):4Kb before exon 17	Intron of BRAF(-):34bp after exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused to BRAF exons 11-18): c.5248-4149:KIAA1549_c.1314+35:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1941622	NA	0	10	10	12
P-0028626-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21974759	22153033	Exon 1 of CDKN2A(-)	IGR: 150Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_000077, NM_058195) rearrangement: c.68:CDKN2A_chr9:g.22153033del.	PRECISE		MANUAL_OK	3to5	-	178274	NA	0	15	10	15
P-0028631-T01-IM6	SOMATIC	WWC2	FAT1	4	4	184216350	187538449	Intron of WWC2(+):6Kb after exon 21	Intron of FAT1(-):94bp before exon 11	GRCh37	DUPLICATION	FAT (NM_005245) rearrangement: c.8879-94:FAT1_chr4:g.184216350dup	PRECISE		MANUAL_OK	5to3	-	3322099	NA	0	12	10	12
P-0028632-T01-IM6	SOMATIC	TSC2	ZNF436-AS1	16	1	2111887	23695925	Exon 12 of TSC2(+)	5-UTR of ZNF436-AS1(+):2Kb before coding start	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(1;16)(p36.11;p13.3)(chr1:g.23695925::chr16:g.2111887)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF436-AS1:TSC2}	0	NA	0	25	10	26
P-0028632-T01-IM6	SOMATIC	PKN1	JAK3	19	19	14556834	17949195	Intron of PKN1(+):403bp before exon 4	Exon 11 of JAK3(-)	GRCh37	DUPLICATION	JAK3 (NM_000215) rearrangement: c.1446:JAK3_chr19:g.14556834dup	PRECISE		MANUAL_OK	5to3	-	3392361	NA	0	10	10	11
P-0028636-T01-IM6	SOMATIC	LPPR1	NOTCH1	9	9	103795660	139405628	5-UTR of LPPR1(+):152Kb before coding start	Exon 16 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.2563:NOTCH1_chr9:g.103795660del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	35609968	NA	0	4	7	4
P-0028914-T02-IM6	SOMATIC	RAD21	RAD21	8	8	117859930	117861185	Exon 14 of RAD21(-)	Exon 13 of RAD21(-)	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.1704_c.1705del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1255	NA	0	44	10	57
P-0029930-T01-IM6	SOMATIC	CRLF2	EPB41L3	X	18	1325397	5596405	Exon 3 of CRLF2(-)	5-UTR of EPB41L3(-):202Kb before coding start	GRCh37	TRANSLOCATION	EPB41L3 (NM_012307) - CRLF2 (NM_022148) rearrangement: t(X;18)(p11.31;p22.33)(chrX:g.1325397::chr18:g.5596405)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EPB41L3:CRLF2}	0	NA	0	20	10	20
P-0029939-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874496	42875025	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4852:TMPRSS2_c.40-56952:ERG	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000529	NA	0	46	10	46
P-0029943-T01-IM6	SOMATIC	ATF1	ERBB3	12	12	51167430	56488299	5-UTR of ATF1(+):6Kb before coding start	Exon 15 of ERBB3(+)	GRCh37	DELETION	ATF1 (NM_005171) - ERBB3 (NM_001982) rearrangement: c.-6-6493:ATF1_c.1818:ERBB3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ATF1:ERBB3}	5320869	NA	0	5	10	5
P-0029944-T01-IM6	SOMATIC	PTCH1	PTCH1	9	9	98108601	98211296	IGR: 97Kb before PTCH1(-)	Intron of PTCH1(-):54bp after exon 22	GRCh37	DELETION	PTCH1 (NM_000264) rearrangement: c.3804+55:PTCH1_chr9:g.98108601del	PRECISE		MANUAL_OK	3to5	-	102695	NA	0	42	10	42
P-0029971-T01-IM6	SOMATIC	ALK	EML4	2	2	29447807	42507871	Intron of ALK(-):519bp after exon 19	Intron of EML4(+):118bp before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-119:EML4_c.3172+520:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13060064	NA	0	76	10	76
P-0029972-T01-IM6	SOMATIC	STAT5B	STAT5A	17	17	40370286	40453308	Exon 9 of STAT5B(-)	Exon 10 of STAT5A(+)	GRCh37	INVERSION	STAT5B (NM_012448) - STAT5A (NM_003152) rearrangement: c.1052:STAT5B_c.1005:STAT5Ainv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {STAT5B:STAT5A}	83022	NA	0	5	0	10
P-0029973-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55107413	55222188	Intron of EGFR(+):20Kb after exon 1	Intron of EGFR(+):343bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+20355_c.889+343del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	114775	NA	0	445	0	473
P-0029997-T01-IM6	SOMATIC	RET	HTR7	10	10	43611268	92431103	Intron of RET(+):763bp before exon 12	IGR: 69Kb before HTR7(-)	GRCh37	DELETION	RET (NM_020975) rearrangement: c.2137-764:RET_chr10:g.92431103del	PRECISE		MANUAL_OK	3to5	-	48819835	NA	0	27	10	27
P-0030000-T01-IM6	SOMATIC	CDKN2A	SNHG5	9	6	21971298	86363454	Intron of CDKN2A(-):91bp before exon 2	IGR: 23Kb before SNHG5(-)	GRCh37	TRANSLOCATION	CDKN2A (NM_058195, NM_000077) rearrangement: t(6;9)(q14.3;p21.3)(chr6:g.86363454::chr9:g.21971298)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	42	10	42
P-0030001-T01-IM6	SOMATIC	ORAOV1	FGF19	11	11	69483088	69515809	Intron of ORAOV1(-):308bp before exon 4	Intron of FGF19(-):1Kb before exon 3	GRCh37	DELETION	FGF19 (NM_005117) - ORAOV1 (NM_153451) rearrangement: c.337-1465:FGF19_c.228-308:ORAOV1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGF19:ORAOV1}	32721	NA	0	33	10	34
P-0030002-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397694	139433990	Exon 27 of NOTCH1(-)	Intron of NOTCH1(-):4Kb after exon 2	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.5107_c.140+4486del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	36296	NA	0	17	10	18
P-0030007-T01-IM6	SOMATIC	ATP6V1E1	BABAM1	22	19	18110352	17382506	Intron of ATP6V1E1(-):1Kb after exon 1	Intron of BABAM1(+):42bp after exon 3	GRCh37	TRANSLOCATION	BABAM1 (NM_001033549) - ATP6V1E1(NM_001696) rearrangement: t(19;22)(p13.11;q11.21)(chr19:g.17382506::chr22:g.18110352)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {BABAM1:ATP6V1E1}	0	NA	0	97	10	100
P-0030008-T01-IM6	SOMATIC	FAM175A	FAM175A	4	4	84391308	84398095	Intron of FAM175A(-):47bp after exon 5	Intron of FAM175A(-):263bp before exon 3	GRCh37	DUPLICATION	FAM175A (NM_139076) rearrangement: c.476+48_c.179-263dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6787	NA	0	2	4	2
P-0019064-T02-IM6	SOMATIC	KMT2D	KMT2D	12	12	49418476	49422902	Exon 50 of KMT2D(-)	Exon 44 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.15937_c.14193del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4426	NA	0	4	10	4
P-0028640-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193111013	193119330	Exon 7 of CDC73(+)	Intron of CDC73(+):103bp before exon 9	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.546_c.829-104del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8317	NA	0	5	9	5
P-0028640-T01-IM6	SOMATIC	RAB39A	ATM	11	11	107807075	108188139	Intron of RAB39A(+):8Kb after exon 1	Exon 43 of ATM(+)	GRCh37	DUPLICATION	ATM (NM_000051) - RAB39A (NM_017516) rearrangement: c.6238:ATM_c.227+7554RAB39Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATM:RAB39A}	381064	NA	0	22	10	24
P-0028640-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900744	3907167	Exon 2 of CREBBP(-)	Intron of CREBBP(-):6Kb before exon 2	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.86-6157_c.352del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6423	NA	0	6	6	6
P-0028642-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143002056	143033722	Intron of INPP4B(-):1Kb after exon 25	Exon 22 of INPP4B(-)	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.2249_c.2642+1128del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31666	NA	0	23	10	24
P-0028647-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1741279	1808731	Intron of TACC3(+):149bp before exon 11	Intron of FGFR3(+):70bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 11-16): c.2274+70:FGFR3_c.1942-150:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67452	NA	0	68	10	74
P-0028658-T01-IM6	SOMATIC	RPRD2	MCL1	1	1	150348305	150551958	Intron of RPRD2(+):11Kb after exon 1	Exon 1 of MCL1(-)	GRCh37	DELETION	MCL1 (NM_021960) Rearrangement: c.49:MCL1_chr1:150348305del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	203653	NA	0	32	10	32
P-0028658-T01-IM6	SOMATIC	TCAP	ERBB2	17	17	37822170	37883340	Exon 2 of TCAP(+)	Intron of ERBB2(+):84bp after exon 25	GRCh37	DUPLICATION	ERBB2 (NM_004448) - TCAP (NM_003673) Rearrangement:  c.3159+84:ERBB2_c.312:TCAPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB2:TCAP}	61170	NA	0	11	10	12
P-0028678-T01-IM6	SOMATIC	KMT2D	TRHDE	12	12	49421290	72767423	Intron of KMT2D(-):185bp before exon 48	Intron of TRHDE(+):4Kb before exon 3	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.14644-185:KMT2D_chr12:g.72767423del	PRECISE		MANUAL_OK	3to5	-	23346133	NA	0	23	10	23
P-0028689-T01-IM6	SOMATIC	ITM2B	RB1	13	13	48812170	48953828	Intron of ITM2B(+):5Kb after exon 1	Intron of RB1(+):42bp after exon 14	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1389+42:RB1_chr13:g.48812170inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	141658	NA	0	88	10	86
P-0028695-T01-IM6	SOMATIC	DNAJC16	SPEN	1	1	15861310	16262614	Intron of DNAJC16(+):512bp after exon 3	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - DNAJC16 (NM_015291) rearrangement: c.9879:SPEN_c.234+512:DNAJC16dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:DNAJC16}	401304	NA	0	17	10	18
P-0028699-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	22008654	22010019	Intron of CDKN2B(-):142bp after exon 1	Promoter of CDKN2B(-):7Kb from tx start	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.156+143_c.-1067inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1365	NA	0	13	10	13
P-0028701-T01-IM6	SOMATIC	ZNF276	FANCA	16	16	89796570	89871704	Intron of ZNF276(+):844bp after exon 6	Exon 7 of FANCA(-)	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.693:FANCA_chr16:g.89796570del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	75134	NA	0	37	10	37
P-0028710-T01-IM6	SOMATIC	KATNA1	LATS1	6	6	149924489	149997811	Exon 6 of KATNA1(-)	Exon 6 of LATS1(-)	GRCh37	DUPLICATION	KATNA1 (NM_007044) - LATS1 (NM_004690) rearrangement: c.644:KATNA1_c.2656:LATS1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KATNA1:LATS1}	73322	NA	0	42	10	42
P-0028712-T01-IM6	SOMATIC	S100B	ETV6	21	12	48029480	11992159	IGR: 11Kb before S100B(-)	Exon 3 of ETV6(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;21)(p13.2;q22.3)(chr12:g.11992159::chr21:g.48029480)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0028715-T01-IM6	SOMATIC	ERBB3	DSTYK	12	1	56487607	205142365	Exon 13 of ERBB3(+)	Intron of DSTYK(-):3Kb before exon 3	GRCh37	TRANSLOCATION	DSTYK (NM_015375) - ERBB3 (NM_001982) rearrangement: t(1;12)(q32.1;q13.2)(chr1:g.205142365::chr12:g.56487607)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DSTYK:ERBB3}	0	NA	0	20	0	28
P-0028716-T01-IM6	SOMATIC	SEC23B	RTEL1	20	20	18490034	62319012	5-UTR of SEC23B(+):1Kb before coding start	Exon 17 of RTEL1(+)	GRCh37	DELETION	SEC23B (NM_032986) - RTEL1 (NM_032957) rearrangement: c.-14-1432:SEC23B_c.1370:RTEL1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SEC23B:RTEL1}	43828978	NA	0	133	10	137
P-0028716-T01-IM6	SOMATIC	DNMT3B	CHD6	20	20	31375196	40188218	Exon 6 of DNMT3B(+)	5-UTR of CHD6(-):155Kb before coding start	GRCh37	INVERSION	DNMT3B (NM_006892) - CHD6 (NM_032221) rearrangement: c.593:DNMT3B_c.-23-8219:CHD6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {DNMT3B:CHD6}	8813022	NA	0	113	10	112
P-0028716-T01-IM6	SOMATIC	SOGA1	SRC	20	20	35451037	36026166	Intron of SOGA1(-):5Kb before exon 4	Exon 9 of SRC(+)	GRCh37	DELETION	SRC (NM_198291) rearrangement: c.768:SRC_chr20:g.35451037del	PRECISE		MANUAL_OK	3to5	-	575129	NA	0	105	10	108
P-0028721-T01-IM6	SOMATIC	PTCH1	PTCH1	9	9	98211605	98244623	Exon 22 of PTCH1(-)	Intron of PTCH1(-):138bp before exon 4	GRCh37	DUPLICATION	PTCH1 (NM_000264) rearrangement: c.3550_c.585-138dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	33018	NA	0	19	10	21
P-0028743-T01-IM6	SOMATIC	FGFR3	NELFA	4	4	1808743	2007790	Intron of FGFR3(+):82bp after exon 17	Intron of NELFA(-):3Kb after exon 1	GRCh37	DUPLICATION	FGFR3 (NM_000142) rearrangement: c.2274+82:FGFR3_chr4:g.2007790dup	PRECISE		MANUAL_OK	5to3	-	199047	NA	0	37	10	37
P-0028745-T01-IM6	SOMATIC	ALK	EML4	2	2	29447509	42525818	Intron of ALK(-):817bp after exon 19	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1523-2563:EML4_c.3172:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078309	NA	0	134	10	134
P-0028754-T01-IM6	SOMATIC	U2AF1	FGF12	21	3	44513280	192445271	Exon 8 of U2AF1(-)	5-UTR of FGF12(-):583Kb before coding start	GRCh37	TRANSLOCATION	U2AF1 (NM_006758) rearrangement: t(3;21)(q28-29;q22.3)(chr3:g.192445271::chr21:g.44513280)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGF12:U2AF1}	0	NA	0	37	10	64
P-0028759-T01-IM6	SOMATIC	FAT1	LINC01262	4	4	187630639	190476182	Exon 2 of FAT1(-)	IGR: 105Kb before LINC01262(+)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.343:FAT1_chr4:g.190476182del	PRECISE		MANUAL_OK	3to5	-	2845543	NA	0	5	10	11
P-0028761-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8376208	8377186	Intron of PTPRD(-):118bp before exon 39	Intron of PTPRD(-):460bp before exon 38	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4387-460_c.4507-118del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	978	NA	0	12	9	10
P-0028773-T01-IM6	SOMATIC	ZP1	KMT2A	11	11	60627032	118342820	IGR: 8Kb before ZP1(+)	Exon 3 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.946:KMT2A_chr11:g.60627032del.	PRECISE		MANUAL_OK	3to5	-	57715788	NA	0	5	8	5
P-0028773-T02-IM6	SOMATIC	ZP1	KMT2A	11	11	60627032	118342820	IGR: 8Kb before ZP1(+)	Exon 3 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: chr11:g.60627032_c.946del	PRECISE		MANUAL_OK	3to5	-	57715788	NA	0	9	10	9
P-0028775-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40053713	42867935	IGR: 57Kb before LINC00114(-)	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-1430:TMPRSS2_chr21:g.40053713del	PRECISE		MANUAL_OK	3to5	-	2814222	NA	0	7	10	7
P-0028779-T01-IM6	SOMATIC	CLDN19	SZT2	1	1	43175179	43870070	IGR: 24Kb before CLDN19(-)	Exon 4 of SZT2(+)	GRCh37	DUPLICATION	SZT2 (NM_015284) rearrangement: c.347:SZT2_chr1:g.43175179dup	PRECISE		MANUAL_OK	5to3	-	694891	NA	0	3	7	3
P-0028787-T01-IM6	SOMATIC	EWSR1	UNC13A	22	19	29692321	17759728	Exon 13 of EWSR1(+)	Exon 14 of UNC13A(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(19;22)(p13.11;q12.2)(chr19:g.17759728::chr22:g.29692321)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	6
P-0028790-T01-IM6	SOMATIC	VHL	VHL	3	3	10180870	10185573	Promoter of VHL(+):2Kb from tx start	Intron of VHL(+):2Kb after exon 1	GRCh37	INVERSION	VHL (NM_000551) rearrangement: c.-2662_c.340+1702inv	PRECISE		MANUAL_OK	5to5	-	4703	NA	0	24	10	30
P-0028791-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89521701	89523558	Exon 16 of EPHA3(+)	Intron of EPHA3(+):2Kb after exon 16	GRCh37	DELETION	EPHA3 (NM_005233) rearrangement: c.2778_c.2846+1789del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1857	NA	0	26	0	27
P-0028833-T01-IM6	SOMATIC	MSI2	MSI2	17	17	55308451	55335639	IGR: 25Kb before MSI2(+)	Exon 4 of MSI2(+)	GRCh37	DUPLICATION	MSI2 (NM_138962) rearrangement: c.194_chr17:g.55308451dup	PRECISE		MANUAL_OK	5to3	-	27188	NA	0	8	10	8
P-0028838-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47038611	47039626	Intron of RBM10(+):49bp after exon 8	Exon 11 of RBM10(+)	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.919+49_c.1273inv	IMPPRECISE		MANUAL_OK	5to5	-	1015	NA	0	6	0	7
P-0028842-T01-IM6	SOMATIC	APC	APC	5	5	112167198	112175556	Intron of APC(+):3Kb after exon 14	Exon 16 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: c.1743+2529_c.4265dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8358	NA	0	6	10	6
P-0028861-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55180247	55223447	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):75bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-29732_cc.890-76del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	43200	NA	0	4	10	4
P-0028861-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241077	55269940	Intron of EGFR(+):260bp after exon 17	Intron of EGFR(+):269bp before exon 27	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+260_c.3163-270dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28863	NA	0	901	10	1294
P-0028865-T02-IM6	SOMATIC	ROS1	TPM3	6	1	117643589	154133648	Intron of ROS1(-):1Kb before exon 35	Intron of TPM3(-):3Kb before exon 7	GRCh37	TRANSLOCATION	TPM3 (NM_001278190) - ROS1 (NM_002944) fusion (TPM3 exons 1-6 with ROS1 exons 35-43): t(1;6)(q21.3;q22.1)(chr1:g.154133648::chr6:g.117643589)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TPM3:ROS1}	0	NA	0	79	0	83
P-0028887-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44922005	44941336	Intron of KDM6A(+):12bp after exon 15	Intron of KDM6A(+):484bp before exon 21	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.1527+12_c.3145-485del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	19331	NA	0	12	10	15
P-0028892-T01-IM6	SOMATIC	KDR	MIR1973	4	4	55970982	117110034	Exon 13 of KDR(-)	IGR: 111Kb before MIR1973(+)	GRCh37	DELETION	KDR (NM_002253) rearrangement: c.1815:KDR_chr4:g.117110034del	PRECISE		MANUAL_OK	3to5	-	61139052	NA	0	2	7	2
P-0028897-T01-IM6	SOMATIC	SH2B3	KAZN	12	1	111885908	14987055	Exon 8 of SH2B3(+)	Intron of KAZN(+):61Kb after exon 1	GRCh37	TRANSLOCATION	SH2B3 (NM_005475) rearrangement: t(1;12)(p36.21;q24.12)(chr1:g.14987055::chr12:g.111885908)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	8	8	8
P-0028897-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	4094324	4095377	Intron of MAP2K2(-):126bp after exon 10	Intron of MAP2K2(-):8bp after exon 9	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.1092+127_c.1046+9inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1053	NA	0	3	6	4
P-0028913-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47008314	47028890	Intron of RBM10(+):1Kb after exon 2	Exon 3 of RBM10(+)	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.212+1417_c.389inv	PRECISE		MANUAL_OK	5to5	-	20576	NA	0	30	10	50
P-0028915-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	170001293	170002337	Intron of PRKCI(+):955bp before exon 12	Exon 12 of PRKCI(+)	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: c.1068-956_c.1156inv	PRECISE		MANUAL_OK	5to5	-	1044	NA	0	8	10	11
P-0028918-T01-IM6	SOMATIC	HIST1H3I	OR2B6	6	6	27839895	27921069	Exon 1 of HIST1H3I(-)	IGR: 4Kb before OR2B6(+)	GRCh37	DELETION	HIST1H3I (NM_003533) rearrangement: c.199_chr6:g.27921069del	PRECISE		MANUAL_OK	3to5	-	81174	NA	0	9	10	9
P-0028926-T01-IM6	SOMATIC	ROS1	LPAL2	6	6	117645958	160895908	Intron of ROS1(-):380bp before exon 34	3-UTR of LPAL2(-):36Kb after coding stop	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5558-380:ROS1_chr6:g.160895908inv	PRECISE		MANUAL_OK	3to3	-	43249950	NA	0	5	9	5
P-0028933-T01-IM6	SOMATIC	HNRNPA3	NFE2L2	2	2	178089672	178095867	Promoter of HNRNPA3(+):12Kb from tx start	Exon 5 of NFE2L2(-)	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.1464:NFE2L2_chr2:g.178089672del.	PRECISE		MANUAL_OK	3to5	Antisense Fusion	6195	NA	1	72	10	79
P-0028933-T01-IM6	SOMATIC	EP300	GPATCH8	22	17	41574494	42537013	Exon 31 of EP300(+)	Intron of GPATCH8(-):5Kb after exon 3	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(17;22)(q21.31;q13.2)(chr17:g.42537013::chr22:g.41574494)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	165	10	174
P-0028936-T01-IM6	SOMATIC	CDK4	CDK4	12	12	58144934	58146085	Intron of CDK4(-):55bp after exon 3	5-UTR of CDK4(-):4Kb before coding start	GRCh37	INVERSION	CDK4 (NM_000075) rearrangement: c.354+56_c.-147inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1151	NA	0	4	8	4
P-0028937-T01-IM6	SOMATIC	POLE	POLE	12	12	133235858	133266776	Intron of POLE(-):22bp after exon 26	Promoter of POLE(-):66Kb from tx start	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.3275+23_c.-2875inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	30918	NA	0	4	10	5
P-0028937-T01-IM6	SOMATIC	PROSC	FGFR1	8	8	37619984	38272238	Promoter of PROSC(+):116bp from tx start	Intron of FGFR1(-):58bp after exon 15	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.2070+59:FGFR1_chr8:g.37619984del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	652254	NA	0	20	10	20
P-0028938-T01-IM6	SOMATIC	GHR	RASA1	5	5	42683483	86681157	Intron of GHR(+):6Kb before exon 3	Exon 22 of RASA1(+)	GRCh37	INVERSION	RASA1 (NM_002890) rearrangement: c.2798:RASA1_chr5:g.42683483inv	PRECISE		MANUAL_OK	5to5	-	43997674	NA	0	3	4	3
P-0028940-T01-IM6	SOMATIC	PDGFRA	LOC101928995	4	1	55146618	116439067	Exon 16 of PDGFRA(+)	IGR: 23Kb before LOC101928995(+)	GRCh37	TRANSLOCATION	PDGFRA (NM_006206) rearrangement: t(1;4)(p13.1;q12)(chr1:g.116439067::chr4:g.55146618)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	26
P-0028941-T01-IM6	SOMATIC	CD58	VTCN1	1	1	117085900	117699251	Intron of CD58(-):1Kb after exon 2	Exon 3 of VTCN1(-)	GRCh37	DUPLICATION	CD58 (NM_001779) - VTCN1 (NM_024626) rearrangement: c.364+1033:CD58_c.390:VTCN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CD58:VTCN1}	613351	NA	0	2	10	5
P-0028974-T01-IM6	SOMATIC	PPP6C	TBCA	9	5	127951896	77053105	Intron of PPP6C(-):26bp after exon 1	Intron of TBCA(-):19Kb after exon 1	GRCh37	TRANSLOCATION	PPP6C (NM_002721) rearrangement: t(5;9)(q14.1;q33.3)(chr5:g.77053105::chr9:g.127951896)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	84	10	84
P-0028976-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268195	55269476	Intron of EGFR(+):89bp after exon 24	Intron of EGFR(+):1bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+89_c.3162+1del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1281	NA	0	15	10	15
P-0028994-T01-IM6	SOMATIC	PALB2	TRIM44	16	11	23641408	35689178	Exon 5 of PALB2(-)	Intron of TRIM44(+):4Kb after exon 1	GRCh37	TRANSLOCATION	PALB2 (NM_024675) - TRIM44 (NM_017583) Rearrangement : t(11,16)(p13,p12.2)(chr11:g.35689178::chr16:g.23641408)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PALB2:TRIM44}	0	NA	0	27	10	31
P-0028994-T01-IM6	SOMATIC	GRIN2A	WDR27	16	6	9892332	170002277	Intron of GRIN2A(-):11bp before exon 11	Intron of WDR27(-):37bp after exon 20	GRCh37	TRANSLOCATION	WDR27 (NM_182552) - GRIN2A (NM_001134407) Rearrangement : t(6,16)(q27,p13.2)(chr6:g.170002277::chr16:g.989233)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {WDR27:GRIN2A}	0	NA	0	23	10	23
P-0028994-T01-IM6	SOMATIC	LINC01320	REL	2	2	34704411	61128283	IGR: 198Kb before LINC01320(+)	Intron of REL(+):65bp after exon 4	GRCh37	INVERSION	REL (NM_002908) rearrangement: c.394+65:REL_chr2:g.34704411inv	IMPPRECISE		MANUAL_OK	3to3	-	26423872	NA	0	4	0	14
P-0028995-T01-IM6	SOMATIC	PGR	TRPC6	11	11	100933257	101449309	Exon 4 of PGR(-)	Intron of TRPC6(-):5Kb after exon 1	GRCh37	DELETION	TRPC6 (NM_004621) - PGR (NM_000926) rearrangement: c.170+4756:TRPC6_c.2133:PGRdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TRPC6:PGR}	516052	NA	0	18	0	23
P-0028998-T01-IM6	SOMATIC	RBPMS-AS1	WHSC1L1	8	8	30205715	38162673	IGR: 34Kb before RBPMS-AS1(-)	Intron of WHSC1L1(-):92bp after exon 13	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2440+93: WHSC1L1_chr8:g.30205715inv.	PRECISE		MANUAL_OK	5to5	-	7956958	NA	0	31	10	31
P-0029016-T01-IM6	SOMATIC	FANCC	MAK	9	6	97888733	10809757	Intron of FANCC(-):77bp after exon 9	Intron of MAK(-):582bp before exon 6	GRCh37	TRANSLOCATION	FANCC (NM_000136) - MAK (NM_001242957) Rearrangement : t(6,9)(p24.2,q22.32)(chr6:g.10809757::chr9:g.97888733)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FANCC:MAK}	0	NA	0	27	10	27
P-0029016-T01-IM6	SOMATIC	ABL1	FOXP2	9	7	133710845	113847210	Exon 1 of ABL1(+)	5-UTR of FOXP2(+):487Kb before coding start	GRCh37	TRANSLOCATION	ABL1 (NM_005157) Rearrangement : t(7,9)(q31.1,q34.12)(chr7:g.113847210::chr9:g.133710845)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	27	10	40
P-0029018-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2110708	2122875	Exon 11 of TSC2(+)	Exon 21 of TSC2(+)	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.1013_c.2246inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	12167	NA	0	4	10	4
P-0029022-T01-IM6	SOMATIC	SMAD4	CDK17	18	12	48584555	96912182	Exon 6 of SMAD4(+)	IGR: 240Kb before CDK17(-)	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) Rearrangement : t(12,18)(q23.1,q21.2)(chr12:g.96912182::chr18:g.48584555)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0029023-T01-IM6	SOMATIC	SLC25A51P1	ARID1B	6	6	67007800	157510816	IGR: 510Kb before SLC25A51P1(+)	Exon 14 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.3591_chr6:g.67007800del	PRECISE		MANUAL_OK	3to5	-	90503016	NA	0	91	10	93
P-0029024-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38162110	38163937	Exon 14 of WHSC1L1(-)	Intron of WHSC1L1(-):974bp before exon 13	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2606_c.2243-974inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1827	NA	0	14	10	16
P-0029028-T01-IM6	SOMATIC	ETV6	EMP1	12	12	11803226	13294731	Intron of ETV6(+):132bp after exon 1	IGR: 55Kb before EMP1(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.33+132_chr12:g.13294731del	PRECISE		MANUAL_OK	3to5	-	1491505	NA	0	13	10	16
P-0029059-T01-IM6	SOMATIC	LINC-PINT	BRAF	7	7	130724897	140484116	3-UTR of LINC-PINT(-):67Kb after coding stop	Intron of BRAF(-):1Kb before exon 10	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1178-1159:BRAF_chr7:g.130724897del	PRECISE		MANUAL_OK	3to5	-	9759219	NA	0	78	10	78
P-0029067-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60423713	123240197	Intron of BICC1(+):38Kb before exon 3	Intron of FGFR2(-):662bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused with BICC1 exons 3-21) : c.2302-67:FGFR2_c.238-6757:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62816484	NA	0	198	10	234
P-0029069-T01-IM6	SOMATIC	TET1	TET1	10	10	70400979	70412334	Intron of TET1(+):3Kb before exon 4	Exon 6 of TET1(+)	GRCh37	DUPLICATION	TET1 (NM_030625) rearrangement: c.1969-3476_c.4444dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11355	NA	0	11	10	17
P-0029069-T01-IM6	SOMATIC	RB1	RB1	13	13	48942645	48950906	Intron of RB1(+):17bp before exon 11	Intron of RB1(+):147bp before exon 13	GRCh37	DUPLICATION	RB1 (NM_000321) Rearrangement: c.1050-18_c.1216-148dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	8261	NA	0	16	10	18
P-0029069-T01-IM6	SOMATIC	CIC	CIC	19	19	42790557	42795137	Intron of CIC(+):365bp before exon 2	Exon 10 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) rearrangement: c.68-366_c.2217dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4580	NA	0	34	10	36
P-0029083-T02-IM6	SOMATIC	OR2J3	LATS1	6	6	29087816	150004527	IGR: 8Kb before OR2J3(+)	Exon 4 of LATS1(-)	GRCh37	INVERSION	LATS1 (NM_004690) rearrangement: c.1698:LATS1_chr6:g.29087816inv	PRECISE		MANUAL_OK	5to5	-	120916711	NA	0	24	10	38
P-0029084-T01-IM6	SOMATIC	FAT1	LINC01262	4	4	187542572	189982700	Exon 10 of FAT1(-)	IGR: 598Kb before LINC01262(+)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement:c.5168:FAT1_chr4:g.189982700del	PRECISE		MANUAL_OK	3to5	-	2440128	NA	0	5	10	6
P-0029091-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56433394	56435154	Intron of RNF43(-):1Kb before exon 10	Exon 9 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.2309-1047_c.1983del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1760	NA	0	91	10	98
P-0029101-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486824	57506159	Intron of NAB2(+):21bp before exon 5	Promoter of STAT6(-):17Kb from tx start	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 16-22):  c.1144-22:NAB2_c.-1269:STAT6inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NAB2:STAT6}	19335	NA	0	39	10	39
P-0029105-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39853626	42873116	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3000:TMPRSS2_c.18+16661:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019490	NA	0	67	10	72
P-0029105-T02-IM6	SOMATIC	POLE	AIMP1	12	4	133250066	107254220	Intron of POLE(-):94bp after exon 13	Intron of AIMP1(+):1Kb after exon 5	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(4;12)(q24;q24.33)(chr4:g.107254220::chr12:g.133250066)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	18	10	18
P-0029105-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39853626	42873116	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3000:TMPRSS2_c.18+16661:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019490	NA	0	101	10	113
P-0029111-T01-IM6	SOMATIC	NTRK3	MUT	15	6	88420059	49169497	3-UTR of NTRK3(-):106bp after coding stop	IGR: 229Kb before MUT(-)	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(6;15)(p12.3;q25.3)(chr6:g.49169497::chr15:g.88420059)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	88	10	96
P-0029116-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1799905	1806142	Intron of FGFR3(+):1Kb before exon 3	Exon 9 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) rearrangement: c.110-1076_c.1161dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6237	NA	0	57	10	62
P-0029140-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32893377	32894288	Exon 3 of BRCA2(+)	Intron of BRCA2(+):826bp after exon 3	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.231_c.316+826del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	911	NA	0	2	5	2
P-0029141-T01-IM6	SOMATIC	NLRC3	SLX4	16	16	3617116	3639988	3-UTR of NLRC3(-):10Kb after coding stop	Exon 12 of SLX4(-)	GRCh37	DELETION	SLX4 (NM_032444) rearrangement: c.3651:SLX4_chr16:g.3617116del	PRECISE		MANUAL_OK	3to5	-	22872	NA	0	24	10	25
P-0029149-T01-IM6	SOMATIC	ITM2B	RB1	13	13	48767870	48922002	IGR: 39Kb before ITM2B(+)	Intron of RB1(+):3bp after exon 5	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.539+3:RB1_chr13:g.48767870inv	PRECISE		MANUAL_OK	3to3	-	154132	NA	0	21	10	21
P-0029149-T01-IM6	SOMATIC	DPYSL2	DUSP4	8	8	26474876	29207799	Intron of DPYSL2(+):7Kb before exon 4	5-UTR of DUSP4(-):13Kb before coding start	GRCh37	INVERSION	DPYSL2 (NM_001197293) - DUSP4 (NM_001394) rearrangement: c.629-6783:DPYSL2_c.-4:DUSP4inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {DPYSL2:DUSP4}	2732923	NA	0	30	10	29
P-0029151-T01-IM6	SOMATIC	TERT	SLC6A3	5	5	1264648	1412032	Exon 11 of TERT(-)	Intron of SLC6A3(-):562bp before exon 9	GRCh37	DUPLICATION	TERT (NM_198253) - SLC6A3 (NM_001044) rearrangement: c.2714:TERT_c.1157-562:SLC6A3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TERT:SLC6A3}	147384	NA	0	8	10	14
P-0029151-T01-IM6	SOMATIC	NOTCH1	EXD3	9	9	139397461	140209349	Intron of NOTCH1(-):172bp after exon 27	Intron of EXD3(-):5Kb before exon 20	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - EXD3 (NM_017820) rearrangement: c.5167+173:NOTCH1_c.2185-5197:EXD3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH1:EXD3}	811888	NA	0	81	10	87
P-0029152-T01-IM6	SOMATIC	RB1	RB1	13	13	48878229	48883288	Intron of RB1(+):44bp after exon 1	Intron of RB1(+):2Kb after exon 2	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.137+44_c.264+1746del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5059	NA	0	36	10	36
P-0029156-T01-IM6	SOMATIC	GRB10	EGFR	7	7	50834558	55268232	5-UTR of GRB10(-):174Kb before coding start	Intron of EGFR(+):126bp after exon 24	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+126:EGFR_chr7:g.50834558del	PRECISE		MANUAL_OK	3to5	-	4433674	NA	0	14	10	14
P-0029159-T01-IM6	SOMATIC	TPBG	ROS1	6	6	83178662	117646132	IGR: 105Kb before TPBG(+)	Intron of ROS1(-):554bp before exon 34	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5558-554:ROS1_chr6:g.83178662del	PRECISE		MANUAL_OK	3to5	-	34467470	NA	0	62	10	63
P-0029159-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55269850	55871582	Intron of EGFR(+):359bp before exon 27	Intron of SEPT14(-):1Kb after exon 9	GRCh37	INVERSION	SEPT14 (NM_207366) - EGFR (NM_005228) rearrangement: c.1119+1369:SEPT14_c.3163-360:EGFRinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SEPT14:EGFR}	601732	NA	0	9	10	11
P-0029174-T01-IM6	SOMATIC	ALK	EML4	2	2	29446656	42552862	Intron of ALK(-):262bp before exon 20	Intron of EML4(+):168bp after exon 19	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-19 fused with ALK exons 20-29): c.2242+168:EML4_c.3173-262:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13106206	NA	0	230	10	237
P-0029178-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39932566	39947803	Exon 4 of BCOR(-)	5-UTR of BCOR(-):36Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.2033:BCOR_chrX:g.39947803del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15237	NA	0	205	10	225
P-0029183-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40098936	42875841	IGR: 12Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4036:TMPRSS2_chr21:g.40098936del	PRECISE		MANUAL_OK	3to5	-	2776905	NA	0	65	10	67
P-0029184-T01-IM6	SOMATIC	SMAD3	SKOR1	15	15	67457483	68119531	Intron of SMAD3(+):57bp after exon 2	Intron of SKOR1(+):101bp after exon 6	GRCh37	DELETION	SMAD3 (NM_005902) - SKOR1 (NM_001258024) rearrangement: c.400+57:SMAD3_c.1585+101:SKOR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SMAD3:SKOR1}	662048	NA	0	65	10	68
P-0029184-T01-IM6	SOMATIC	NF1	NF1	17	17	29653075	29662500	Exon 37 of NF1(+)	Intron of NF1(+):451bp after exon 40	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5073_c.6006+451del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9425	NA	0	51	10	56
P-0029186-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268801	55271198	Intron of EGFR(+):79bp before exon 25	Intron of EGFR(+):880bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-80_c.3271+880del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2397	NA	0	171	0	3305
P-0029216-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40100480	42871755	IGR: 10Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement: c.56-1639:TMPRSS2_chr21:g.40100480del	PRECISE		MANUAL_OK	3to5	-	2771275	NA	0	4	10	4
P-0029227-T01-IM6	SOMATIC	ARID2	MIR4303	12	12	46244693	98537965	Exon 15 of ARID2(+)	IGR: 149Kb before MIR4303(-)	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.2787:ARDI2_chr12:g.98537965inv	PRECISE		MANUAL_OK	3to3	-	52293272	NA	0	7	10	7
P-0029254-T01-IM6	SOMATIC	CCND2	CASC15	12	6	4383256	21808818	Exon 1 of CCND2(+)	5-UTR of CASC15(+):386Kb before coding start	GRCh37	TRANSLOCATION	CCND2 (NM_001759) rearrangement: t(6;12)(p22.3;p13.32)(chr6:g.21808818::chr12:g.4383256)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	30
P-0029256-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55188896	55222643	Intron of EGFR(+):21Kb before exon 2	Intron of EGFR(+):798bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-21083_c.889+798del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	33747	NA	0	39	10	41
P-0029256-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268449	55271497	Intron of EGFR(+):343bp after exon 24	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+343_c.3271+1179del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3048	NA	0	5	0	5
P-0029258-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684336	128656696	Intron of EWSR1(+):258bp before exon 9	Intron of FLI1(+):5Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128656696::chr22:g.29684336)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	20	10	18
P-0029273-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15999867	16052909	Intron of NCOR1(-):2Kb after exon 21	Intron of NCOR1(-):78bp before exon 9	GRCh37	DUPLICATION	NCOR1 (NM_006311) Rearrangement: c.2820+1814_ c.843-78dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : out of frame	53042	NA	0	18	10	18
P-0029278-T01-IM6	SOMATIC	ARMC6	MEF2B	19	19	19164518	19257796	Intron of ARMC6(+):442bp before exon 5	Intron of MEF2B(-):48bp after exon 5	GRCh37	DELETION	MEF2B (NM_001145785) Rearrangement:  c.541+49:MEF2B_chr19:g.19164518del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	93278	NA	0	16	10	16
P-0029289-T01-IM6	SOMATIC	WDR11	FGFR2	10	10	122889706	123240291	IGR: 279Kb before WDR11(+)	Intron of FGFR2(-):756bp before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-756:FGFR2_chr10:g.122889706del	IMPPRECISE		MANUAL_OK	3to5	-	350585	NA	0	3	0	3
P-0029291-T01-IM6	SOMATIC	RAD51	DLL4	15	15	41022117	41222991	Exon 9 of RAD51(+)	Intron of DLL4(+):111bp after exon 3	GRCh37	DUPLICATION	DLL4 (NM_019074) - RAD51 (NM_002875) Rearrangement: c.394+111:DLL4_c.841:RAD51dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DLL4:RAD51}	200874	NA	0	26	10	26
P-0029291-T01-IM6	SOMATIC	NF1	NF1	17	17	29662343	29701234	Intron of NF1(+):294bp after exon 40	3-UTR of NF1(+):279Kb after coding stop	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement: c.6006+294_c.*61dup	PRECISE		MANUAL_OK	5to3	-	38891	NA	0	14	10	18
P-0029291-T01-IM6	SOMATIC	INSR	VPS13B	19	8	7125617	100814425	Intron of INSR(-):79bp before exon 17	Intron of VPS13B(+):7Kb before exon 44	GRCh37	TRANSLOCATION	INSR (NM_000208) rearrangement: t(8;19)(q22.2;p13.2)(chr8:g.100814425::chr19:g.7125617)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0029294-T01-IM6	SOMATIC	CYLD	CYLD	16	16	50783984	50785671	Exon 3 of CYLD(+)	Exon 4 of CYLD(+)	GRCh37	DELETION	CYLD (NM_001042355) Rearrangement: c.375_c.661del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1687	NA	0	34	10	34
P-0029294-T01-IM6	SOMATIC	LYN	PLAG1	8	8	56911877	57070090	Intron of LYN(+):99bp before exon 12	IGR: 3Kb before PLAG1(-)	GRCh37	INVERSION	LYN (NM_002350) rearrangement: c.1205-100:LYN_chr8:g.57070090inv	PRECISE		MANUAL_OK	5to5	-	158213	NA	0	16	10	16
P-0029298-T01-IM6	SOMATIC	APC	APC	5	5	112175014	112182190	Exon 16 of APC(+)	Promoter of APC(+):109Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3723_c.*2367del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7176	NA	0	73	10	72
P-0029299-T01-IM6	SOMATIC	NF2	NF2	22	22	30028961	30050504	Intron of NF2(+):4Kb before exon 2	Intron of NF2(+):141bp before exon 5	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.115-3779_c.448-142del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	21543	NA	0	9	10	9
P-0029315-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610631	61632922	Intron of RET(+):447bp after exon 11	Intron of CCDC6(-):20Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20: c.304-20462:CCDC6_c.2136+447:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18022291	NA	0	54	10	61
P-0029315-T02-IM6	SOMATIC	RET	CCDC6	10	10	43610631	61632922	Intron of RET(+):447bp after exon 11	Intron of CCDC6(-):20Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20): c.304-20462:CCDC6_c.2136+447:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18022291	NA	0	49	10	61
P-0029326-T01-IM6	SOMATIC	DIAPH1	NTRK1	5	1	140904837	156843860	Intron of DIAPH1(-):767bp after exon 25	Intron of NTRK1(+):109bp after exon 8	GRCh37	TRANSLOCATION	DIAPH1 (NM_005219) - NTRK1 (NM_002529) rearrangement: t(1;5)(q23.1;q31.3)(chr1:g.156843860::chr5:g.140904837)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {DIAPH1:NTRK1}	0	NA	0	29	10	30
P-0029328-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11940850	11984775	Intron of MAP2K4(+):17Kb after exon 1	Exon 3 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.115+16532_c.321del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	43925	NA	0	26	10	27
P-0029333-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874753	42873997	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1 - ERG exons 4-11):  c.56-3881:TMPRSS2_c.40-57209:ERG	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999244	NA	0	6	0	8
P-0029353-T01-IM6	SOMATIC	ATM	C11orf65	11	11	108206688	108253231	Exon 56 of ATM(+)	Promoter of C11orf65(-):495bp from tx start	GRCh37	DELETION	ATM (NM_000051) Rearrangment: c.8268:ATM_chr11:g.108253231del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	46543	NA	0	25	10	25
P-0029353-T01-IM6	SOMATIC	CARM1	HAVCR1P1	19	19	11015795	24480361	Intron of CARM1(+):43bp after exon 2	IGR: 135Kb before HAVCR1P1(-)	GRCh37	INVERSION	CARM1 (NM_199141) Rearrangement: c.346+43:CARM1_chr19:g.24480361inv	PRECISE		MANUAL_OK	3to3	-	13464566	NA	0	4	10	4
P-0029354-T01-IM6	SOMATIC	ERF	SCHLAP1	19	2	42754531	181327407	Exon 2 of ERF(-)	IGR: 229Kb before SCHLAP1(+)	GRCh37	TRANSLOCATION	ERF (NM_006494) Rearrangement: t(22;19) (2q31.3;19q13.2) (chr2:g.181327407::chr19:g.42754531)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	11
P-0029354-T01-IM6	SOMATIC	EMR3	FGFR1	19	8	14765577	38272399	Intron of EMR3(-):216bp after exon 6	Exon 15 of FGFR1(-)	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) Rearrangment: t(8;19) (8p11.23;19p13.12)(chr8:g.38272399::chr19:g.14765577)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	10	15
P-0029357-T02-IM6	SOMATIC	CEACAM7	CD79A	19	19	42173020	42383325	IGR: 4Kb before CEACAM7(-)	Exon 2 of CD79A(+)	GRCh37	DUPLICATION	CD79A (NM_001783) Rearrangement: c.345:CD79A_chr19:g.42173020dup	PRECISE		MANUAL_OK	5to3	-	210305	NA	0	4	6	4
P-0029358-T01-IM6	SOMATIC	SOX9	GRB2	17	17	70120516	73371604	Exon 3 of SOX9(+)	Intron of GRB2(-):18Kb after exon 2	GRCh37	INVERSION	SOX9 (NM_000346) - GRB2 (NM_002086) Rearrangment: c.1518:SOX9_c.78+18028:GRB2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SOX9:GRB2}	3251088	NA	0	94	10	92
P-0029361-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138548869	140489625	Intron of KIAA1549(-):3Kb before exon 16	Intron of BRAF(-):2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) Fusion: c.4930-2667:KIAA1549_c.1141-2241:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1940756	NA	0	5	10	5
P-0029368-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71008569	71155948	Intron of FOXP1(-):27bp before exon 17	Intron of FOXP1(-):6Kb after exon 3	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.282+5739_c.1890-27del	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	147379	NA	0	4	9	4
P-0029391-T01-IM6	SOMATIC	AMPD1	CSDE1	1	1	115224330	115272942	Intron of AMPD1(-):1Kb before exon 6	Exon 13 of CSDE1(-)	GRCh37	DUPLICATION	AMPD1 (NM_000036) - CSDE1 (NM_001242891) rearrangement: c.647-1231:AMPD1_c.1431:CSDE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AMPD1:CSDE1}	48612	NA	0	53	10	56
P-0029391-T01-IM6	SOMATIC	ARF3	KMT2D	12	12	49339772	49435747	5-UTR of ARF3(-):7Kb before coding start	Exon 29 of KMT2D(-)	GRCh37	DUPLICATION	ARF3 (NM_001659) - KMT2D (NM_003482) rearrangement: c.-93-4801:ARF3_c.6136:KMT2Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARF3:KMT2D}	95975	NA	0	47	10	51
P-0029391-T01-IM6	SOMATIC	OR7A5	NOTCH3	19	19	14925262	15281670	IGR: 12Kb before OR7A5(-)	Intron of NOTCH3(-):34bp before exon 26	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.4737-34:NOTCH3_chr19:g.14925262inv	IMPPRECISE		MANUAL_OK	3to3	-	356408	NA	0	86	0	91
P-0029391-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50910217	50912308	Intron of POLD1(+):22bp before exon 13	Intron of POLD1(+):70bp before exon 16	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement:c.1495-23_c.1893-71inv	PRECISE		MANUAL_OK	5to5	-	2091	NA	0	2	5	2
P-0029392-T01-IM6	SOMATIC	TSC2	C8orf33	16	8	2137753	146300149	Intron of TSC2(+):110bp before exon 39	IGR: 22Kb before C8orf33(+)	GRCh37	TRANSLOCATION	TSC2 (NM_000548)  rearrangement: t(8;16)(q24.3;p13.3)(chr8:g.146300149::chr16:g.2137753)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	24
P-0029393-T01-IM6	SOMATIC	BIRC3	BIRC3	11	11	102189401	102195759	5-UTR of BIRC3(+):6Kb before coding start	Exon 3 of BIRC3(+)	GRCh37	DUPLICATION	BIRC3 (NM_182962) rearrangement: c.-114+1099_c.519dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6358	NA	0	44	10	46
P-0029393-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89801277	89818549	Promoter of FANCA(-):3Kb from tx start	Exon 31 of FANCA(-)	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.3063_c.*3732del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17272	NA	0	82	10	84
P-0029393-T01-IM6	SOMATIC	RNF43	PIBF1	17	13	56440469	73547996	Intron of RNF43(-):166bp after exon 5	Intron of PIBF1(+):183bp after exon 16	GRCh37	TRANSLOCATION	RNF43 (NM_017763) - PIBF1 (NM_006346) rearrangement: t(13;17)(q22.1;q22)(chr13:g.73547996::chr17:g.56440469)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RNF43:PIBF1}	0	NA	0	34	10	34
P-0029393-T01-IM6	SOMATIC	NCOA3	FAM205A	20	9	46270904	34739492	Intron of NCOA3(+):52bp before exon 17	IGR: 16Kb before FAM205A(-)	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) rearrangement: t(9;20)(p13.3;q13.12)(chr9:g.34739492::chr20:g.46270904)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	10	0	11
P-0029393-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117878899	117880505	Exon 2 of RAD21(-)	5-UTR of RAD21(-):21Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.-32-1505_c.70del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1606	NA	0	48	10	49
P-0029398-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52712629	52714198	Intron of PBRM1(-):16bp before exon 3	5-UTR of PBRM1(-):132Kb before coding start	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.139-16_c.-12-459del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1569	NA	0	11	10	12
P-0029400-T01-IM6	SOMATIC	ALK	EML4	2	2	29447668	42523297	Intron of ALK(-):658bp after exon 19	Intron of EML4(+):641bp after exon 12	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1315+641:EML4_c.3172+659:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075629	NA	0	138	10	138
P-0029402-T01-IM6	SOMATIC	TRIM62	CSF3R	1	1	33652766	36940993	IGR: 42Kb before TRIM62(-)	Exon 4 of CSF3R(-)	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.346:CSF3R_chr1:g.33652766inv	PRECISE		MANUAL_OK	5to5	-	3288227	NA	0	34	10	45
P-0029402-T01-IM6	SOMATIC	ZSCAN20	CSF3R	1	1	33893988	36933752	IGR: 44Kb before ZSCAN20(+)	Exon 13 of CSF3R(-)	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.1647:CSF3R_chr1:g.33893988inv	PRECISE		MANUAL_OK	3to3	-	3039764	NA	0	45	10	45
P-0029403-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71021788	71032406	Exon 14 of FOXP1(-)	Intron of FOXP1(-):5Kb after exon 10	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1570_c.1146+4739del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10618	NA	0	33	10	36
P-0029405-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39849525	42867932	Intron of ERG(-):21Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exons 1-2 fused to ERG exons 2-10):c.127-1427:TMPRSS2_c.18+20762:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3018407	NA	0	25	0	25
P-0029406-T01-IM6	SOMATIC	PIK3CB	KCNAB1	3	3	138478053	155917234	Exon 1 of PIK3CB(-)	Intron of KCNAB1(+):56Kb after exon 1	GRCh37	INVERSION	PIK3CB (NM_006219) - KCNAB1 (NM_172160) rearrangement: c.133:PIK3CB_c.275+78559:KCNAB1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PIK3CB:KCNAB1}	17439181	NA	0	21	10	26
P-0029447-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55101881	55222183	Intron of EGFR(+):15Kb after exon 1	Intron of EGFR(+):338bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+14823_c.889+338del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	120302	NA	0	43	0	754
P-0029447-T01-IM6	SOMATIC	EGFR	VOPP1	7	7	55270311	55516204	Exon 27 of EGFR(+)	IGR: 22Kb before VOPP1(-)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.3264_chr7:g.55516204inv	PRECISE		MANUAL_OK	3to3	-	245893	NA	0	12	10	12
P-0029453-T01-IM6	SOMATIC	PTEN	ACTA2	10	10	89685308	90743125	Exon 3 of PTEN(+)	5-UTR of ACTA2(-):48Kb before coding start	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.203_chr10:g.90743125del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1057817	NA	0	5	10	6
P-0029460-T01-IM6	SOMATIC	TFAP2D	ROS1	6	6	50511502	117632238	IGR: 170Kb before TFAP2D(+)	Exon 39 of ROS1(-)	GRCh37	INVERSION	ROS1 (NM_002944) Rearrangement:  c.6178:ROS1_chr6:g.50511502inv	PRECISE		MANUAL_OK	5to5	-	67120736	NA	0	4	10	10
P-0029465-T01-IM6	SOMATIC	ARAF	LRP1B	X	2	47424257	141622159	Exon 4 of ARAF(+)	Intron of LRP1B(-):3Kb after exon 27	GRCh37	TRANSLOCATION	ARAF (NM_001654) Rearrangment: t(X;2) (Xp11.3;2q22.1-q22.2)(chrX:g.47424257::chr2:g.141622159)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	21	0	21
P-0029465-T01-IM6	SOMATIC	ARAF	ARAF	X	X	47424746	47426035	Exon 6 of ARAF(+)	Intron of ARAF(+):2bp before exon 7	GRCh37	DELETION	ARAF (NM_001654) Rearrangement: c.554_c.558-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1289	NA	0	24	10	25
P-0029529-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55205962	55222064	Intron of EGFR(+):4Kb before exon 2	Intron of EGFR(+):219bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion c.89-4017_c.889+219del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	16102	NA	0	116	10	220
P-0029531-T01-IM6	SOMATIC	BRAF	AGK	7	7	140500233	141259939	Exon 7 of BRAF(-)	Intron of AGK(+):5Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion (AGK exons 1-2 fused to BRAF exons 7-18): c.101+4572:AGK_c.909:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {AGK:BRAF}	759706	NA	0	136	10	173
P-0029538-T01-IM6	SOMATIC	PIK3R6	ERBB4	17	2	8717229	212426798	Intron of PIK3R6(-):5Kb after exon 18	Exon 20 of ERBB4(-)	GRCh37	TRANSLOCATION	PIK3R6 (NM_001010855) - ERBB4 (NM_005235) rearrangement: t(2;17)(q34;p13.1)(chr2:g.212426798::chr17:g.8717229)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3R6:ERBB4}	0	NA	0	48	10	53
P-0029538-T01-IM6	SOMATIC	DNMT1	FARSA	19	19	10250516	13040772	Intron of DNMT1(-):23bp before exon 33	Intron of FARSA(-):264bp after exon 4	GRCh37	DUPLICATION	DNMT1 (NM_001379) - FARSA (NM_004461) rearrangement: c.3759-23:DNMT1_c.503+265:FARSAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DNMT1:FARSA}	2790256	NA	0	5	10	6
P-0029542-T01-IM6	SOMATIC	RASA1	LINC01339	5	5	86627289	89498591	Exon 2 of RASA1(+)	3-UTR of LINC01339(-):87Kb after coding stop	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.664:RASA1_chr5:g.89498591del	PRECISE		MANUAL_OK	3to5	-	2871302	NA	0	101	10	106
P-0029543-T01-IM6	SOMATIC	MED12	HEATR5A	X	14	70357685	31844633	Exon 41 of MED12(+)	Intron of HEATR5A(-):459bp before exon 12	GRCh37	TRANSLOCATION	MED12 (NM_005120) - HEATR5A (NM_015473) rearrangement: t(X;14)(q13.1;q12)(chrX:g.70357685::chr14:g.31844633)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MED12:HEATR5A}	0	NA	0	79	10	79
P-0029550-T01-IM6	SOMATIC	ALK	EML4	2	2	29447863	42507269	Intron of ALK(-):463bp after exon 19	Intron of EML4(+):720bp before exon 6	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-5 fused with ALK exons 20-29): c.494-721:EML4_c.3172+464:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13059406	NA	0	12	10	11
P-0029559-T01-IM6	SOMATIC	TOP1	PTPRG	20	3	39708821	61957689	Intron of TOP1(+):1bp after exon 6	Intron of PTPRG(+):18Kb before exon 3	GRCh37	TRANSLOCATION	TOP1 (NM_003286) - PTPRG (NM_002841) rearrangement: t(3;20)(p14.2;q12)(chr3:g.61957689::chr20:g.39708821)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TOP1:PTPRG}	0	NA	0	54	10	54
P-0029575-T01-IM6	SOMATIC	OR56A1	LMO1	11	11	6081746	8284971	IGR: 34Kb before OR56A1(-)	5-UTR of LMO1(-):39Kb before coding start	GRCh37	INVERSION	LMO1 (NM_002315) rearrangement: c.-62_chr11:g.6081746inv	PRECISE		MANUAL_OK	3to3	-	2203225	NA	0	87	10	87
P-0029580-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241226	55270272	Intron of EGFR(+):387bp before exon 18	Exon 27 of EGFR(+)	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-388_c.3225dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	29046	NA	0	136	10	145
P-0029583-T01-IM6	SOMATIC	INHBA	LANCL2	7	7	41729351	55480357	Exon 3 of INHBA(-)	Intron of LANCL2(+):575bp after exon 6	GRCh37	DUPLICATION	INHBA (NM_002192) rearrangement: c.1178:INHBA_chr7:g.55480357dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	13751006	NA	0	5	9	5
P-0029590-T01-IM6	SOMATIC	NF2	SCUBE1	22	22	30078945	43624386	Intron of NF2(+):1Kb after exon 15	Intron of SCUBE1(-):691bp after exon 9	GRCh37	INVERSION	NF2 (NM_000268) - SCUBE1 (NM_173050) rearrangement: c.1737+1355:NF2_c.1084+692:SCUBE1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NF2:SCUBE1}	13545441	NA	0	4	5	4
P-0029591-T01-IM6	SOMATIC	CBFB	CBFB	16	16	67100700	67106505	Exon 4 of CBFB(+)	Intron of CBFB(+):6Kb after exon 4	GRCh37	DELETION	CBFB (NM_022845) rearrangement: c.398_c.5804del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5805	NA	0	8	10	10
P-0029594-T01-IM6	SOMATIC	TSHR	EYA1	14	8	81609711	72056267	Exon 10 of TSHR(+)	IGR: 53Kb before EYA1(-)	GRCh37	TRANSLOCATION	TSHR (NM_000369) rearrangement: t(8;14)(q13.3;q31.1)(chr8:g.72056267::chr14:g.81609711)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	9	8	9
P-0029595-T01-IM6	SOMATIC	IZUMO3	RAD50	9	5	24946198	131939249	IGR: 403Kb before IZUMO3(-)	Intron of RAD50(+):68bp after exon 14	GRCh37	TRANSLOCATION	RAD50 (NM_005732)  rearrangement: t(5;9)(q31.1;p21.3)(chr5:g.131939249::chr9:g.24946198)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	41	10	42
P-0029597-T01-IM6	SOMATIC	DIS3	KLF5	13	13	73336384	73643525	Intron of DIS3(-):109bp before exon 17	Intron of KLF5(+):6Kb after exon 3	GRCh37	DELETION	DIS3 (NM_014953) rearrangement: c.2128-109:DIS3_chr13:g.73643525del	PRECISE		MANUAL_OK	3to5	-	307141	NA	0	3	9	3
P-0029600-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737210	1808697	Intron of TACC3(+):158bp after exon 7	Intron of FGFR3(+):36bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+36:FGFR3_c.1644+158:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71487	NA	0	89	10	92
P-0029602-T01-IM6	SOMATIC	RET	CCDC6	10	10	43611160	61618228	Intron of RET(+):871bp before exon 12	Intron of CCDC6(-):6Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-5768:CCDC6_c.2137-872:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18007068	NA	0	111	10	151
P-0029604-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50909783	50912353	Intron of POLD1(+):9bp after exon 12	Intron of POLD1(+):25bp before exon 16	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.1494+9_c.1893-26inv	PRECISE		MANUAL_OK	5to5	-	2570	NA	0	2	6	2
P-0029617-T02-IM6	SOMATIC	TRAIP	MST1R	3	3	49859022	49932838	IGR: 7Kb before TRAIP(-)	Intron of MST1R(-):32bp before exon 14	GRCh37	DUPLICATION	MST1R (NM_002447) rearrangement: chr3:g.49859022_c.3065-32dup	PRECISE		MANUAL_OK	5to3	-	73816	NA	0	25	10	28
P-0029639-T01-IM6	SOMATIC	CBL	CBL	11	11	119148953	119153501	Exon 8 of CBL(+)	Intron of CBL(+):2Kb before exon 10	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1173_c.1432-2178del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4548	NA	0	40	10	40
P-0029644-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76888851	76901093	Exon 19 of ATRX(-)	Intron of ATRX(-):7Kb after exon 15	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.4557+6511_c.4978del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12242	NA	0	47	10	50
P-0029645-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55193726	55221911	Intron of EGFR(+):16Kb before exon 2	Intron of EGFR(+):66bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-16253_c.889+66del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	28185	NA	0	5	10	5
P-0029723-T01-IM6	SOMATIC	TP53BP1	ADAMTS17	15	15	43712670	100734817	Exon 21 of TP53BP1(-)	Intron of ADAMTS17(-):5Kb after exon 8	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: c.4514:TP53BP1_chr15:g.100734817inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	57022147	NA	0	31	10	48
P-0029726-T01-IM6	SOMATIC	FGFR2	UBP1	10	3	123240062	33449450	Intron of FGFR2(-):527bp before exon 18	Intron of UBP1(-):731bp after exon 9	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - UBP1 (NM_001128161) fusion: t(3;10)(p22.3;q26.13)(chr3:g.33449450::chr10:g.123240062)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:UBP1}	0	NA	0	56	10	56
P-0029727-T01-IM6	SOMATIC	SND1	BRAF	7	7	127373549	140482257	Intron of SND1(+):12Kb after exon 10	Intron of BRAF(-):563bp after exon 10	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1152+12095:SND1_c.1314+564:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13108708	NA	0	93	10	93
P-0029730-T01-IM6	SOMATIC	PLK2	GAPT	5	5	57755741	57782779	Exon 1 of PLK2(-)	IGR: 5Kb before GAPT(+)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.46:PLK2_chr5:g.57782779inv	PRECISE		MANUAL_OK	3to3	-	27038	NA	0	36	10	35
P-0029741-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16032924	16054940	Intron of NCOR1(-):3Kb before exon 15	Intron of NCOR1(-):319bp after exon 8	GRCh37	DUPLICATION	NCOR1 (NM_006311) rearrangement: c.842+320_c.1510-3404dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	22016	NA	0	9	10	9
P-0029745-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14228843	14628196	Promoter of PRKACA(-):26Kb from tx start	Intron of DNAJB1(-):338bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) rearrangement: c.212-338:DNAJB1_c.-484:PRKACAdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DNAJB1:PRKACA}	399353	NA	0	20	10	20
P-0029750-T01-IM6	SOMATIC	ALK	EML4	2	2	29446660	42525807	Intron of ALK(-):266bp before exon 20	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1490-2574:EML4_c.3173-266:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079147	NA	0	88	10	86
P-0029752-T01-IM6	SOMATIC	LASP1	RAD51B	17	14	37069550	68301554	Intron of LASP1(+):1Kb before exon 5	Intron of RAD51B(+):242bp before exon 4	GRCh37	TRANSLOCATION	LASP1 (NM_006148) - RAD51B (NM_133509) rearrangement: t(14;17)(q24.1;q12)(chr14:g.68301554::chr17:g.37069550)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LASP1:RAD51B}	0	NA	0	6	10	6
P-0029754-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29683656	51204764	Intron of EWSR1(+):533bp after exon 8	Intron of ATF1(+):1Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-8 fused to ATF1 exons 5-7): t(12;22)(q13.12;q12.2)(chr12:g.51204764::chr22:g.29683656)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	67	10	69
P-0029756-T01-IM6	SOMATIC	HIST1H3H	HIST1H2BM	6	6	27775696	27782714	Promoter of HIST1H3H(+):2Kb from tx start	Promoter of HIST1H2BM(+):107bp from tx start	GRCh37	DELETION	HIST1H3H (NM_003536) rearrangement: c.-2156_c.*4452del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {HIST1H3H:HIST1H2BM}	7018	NA	0	32	10	35
P-0029758-T01-IM6	SOMATIC	ZNF700	DNAJB1	19	19	12044108	14627327	Intron of ZNF700(+):8Kb after exon 1	Exon 2 of DNAJB1(-)	GRCh37	INVERSION	DNAJB1 (NM_006145) - ZNF700 (NM_144566) rearrangement: c.743:DNAJB1_c.63+8020:ZNF700inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DNAJB1:ZNF700}	2583219	NA	0	106	10	171
P-0029762-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153244282	153246040	Exon 12 of FBXW7(-)	Intron of FBXW7(-):494bp before exon 11	GRCh37	DUPLICATION	FBXW7 (NM_033632) rearrangement: c.1645-494_c.1875dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1758	NA	0	6	8	6
P-0029763-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487587	57493670	Intron of NAB2(+):206bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 15-22): c.1468+206:NAB2_c.1624:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	6083	NA	0	39	10	38
P-0029793-T01-IM6	SOMATIC	IL1RAPL1	RECQL4	X	8	29843951	145740560	Intron of IL1RAPL1(+):92Kb before exon 7	Exon 8 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(8;X)(q24.3;p21.2)(chr8:g.145740560::chrX:g.29843951)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	5	0	5
P-0029796-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875919	42876388	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3489:TMPRSS2_c.40-58375:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000469	NA	0	35	10	36
P-0029798-T01-IM6	SOMATIC	EGFEM1P	BCL6	3	3	168207075	187440303	5-UTR of EGFEM1P(+):341Kb before coding start	Exon 10 of BCL6(-)	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.2064_chr3:g.168207075inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFEM1P:BCL6}	19233228	NA	0	36	10	36
P-0029801-T01-IM6	SOMATIC	NOTCH4	FAM193A	6	4	32183122	2664220	Exon 12 of NOTCH4(-)	Intron of FAM193A(+):344bp before exon 9	GRCh37	TRANSLOCATION	FAM193A (NM_003704) - NOTCH4 (NM_004557) rearrangement: t(4;6)(p16.3;p21.32)(chr4:g.2664220::chr6:g.32183122)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FAM193A:NOTCH4}	0	NA	0	140	10	137
P-0029803-T01-IM6	SOMATIC	BAP1	CLCN6	3	1	52441869	11870943	Intron of BAP1(-):104bp after exon 5	Intron of CLCN6(+):4Kb after exon 2	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(1;3)(p36.22;p21.1)(chr1:g.11870943::chr3:g.52441869)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	13	10	14
P-0029809-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39907646	42868449	Intron of ERG(-):40Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1-2 with ERG exons 4-10) : c.126+1597:TMPRSS2_c.39+39940:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2960803	NA	0	18	10	19
P-0029813-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55115480	55269532	Intron of EGFR(+):28Kb after exon 1	Intron of EGFR(+):57bp after exon 26	GRCh37	INVERSION	EGFR (NM_005228) Rearrangement : c.88+28422_c.3162+57inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	154052	NA	0	5	10	5
P-0029814-T01-IM6	SOMATIC	NF1	KCNU1	17	8	29588872	36189531	Exon 35 of NF1(+)	IGR: 452Kb before KCNU1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(8;17)(p12;q11.2)(chr8:g.36189531::chr17:g.29588872)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0029819-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11982611	12009486	Intron of ETV6(+):9Kb before exon 3	Intron of ETV6(+):3Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.164-9463_c.463+2991del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	26875	NA	0	24	10	25
P-0029821-T01-IM6	SOMATIC	EPHX3	BRD4	19	19	15337047	15349607	Promoter of EPHX3(-):682bp from tx start	Exon 19 of BRD4(-)	GRCh37	DUPLICATION	BRD4 (NM_058243) rearrangement: c.3967:BRD4_chr19:g.15337047dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EPHX3:BRD4}	12560	NA	0	4	10	4
P-0029823-T01-IM6	SOMATIC	ERBB2	CLCF1	17	11	37875982	67137375	Intron of ERBB2(+):57bp before exon 16	Intron of CLCF1(-):2Kb before exon 2	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(11;17)(q13.2;q12)(chr11:g.67137375::chr17:g.37875982)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	66	10	69
P-0029831-T01-IM6	SOMATIC	NWD1	JAK3	19	19	16877524	17942575	Intron of NWD1(+):2Kb after exon 10	Exon 20 of JAK3(-)	GRCh37	DUPLICATION	JAK3 (NM_000215) Rearrangement: c.2713:JAK3_chr19:g.16877524dup	PRECISE		MANUAL_OK	5to3	-	1065051	NA	0	135	10	143
P-0029835-T01-IM6	SOMATIC	YAP1	YAP1	11	11	102062012	102098385	Intron of YAP1(+):5Kb after exon 4	Intron of YAP1(+):73bp after exon 8	GRCh37	DUPLICATION	YAP1 (NM_001130145) Rearrangement: c.802+5150_c.1276+73dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	36373	NA	0	8	10	8
P-0029835-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117868501	117877469	Exon 8 of RAD21(-)	Intron of RAD21(-):1Kb after exon 2	GRCh37	DELETION	RAD21 (NM_006265) Rearrangement: c.841_c.144+1356del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8968	NA	0	39	10	41
P-0029839-T01-IM6	SOMATIC	CREBBP	LOC101927334	16	16	3817855	51004135	Exon 16 of CREBBP(-)	IGR: 48Kb before LOC101927334(+)	GRCh37	INVERSION	CREBBP (NM_004380) Rearrangement: c.3116:CREBBP_g.51004135inv	PRECISE		MANUAL_OK	3to3	-	47186280	NA	0	19	10	19
P-0029839-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87476855	87685163	Intron of NTRK2(+):853bp after exon 15	IGR: 400Kb before NTRK2(+)	GRCh37	INVERSION	NTRK2 (NM_006180) Rearrangement: c.1444+853_g.87685163inv	PRECISE		MANUAL_OK	5to5	-	208308	NA	0	20	10	26
P-0029843-T01-IM6	SOMATIC	SH3BGR	TMPRSS2	21	21	40845925	42872212	Intron of SH3BGR(+):1Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	SH3BGR (NM_007341) - TMPRSS2 (NM_001135099) rearrangement: c.421-1136:SH3BGR_c.56-2096:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SH3BGR:TMPRSS2}	2026287	NA	0	15	10	15
P-0029849-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	9	10	11
P-0029869-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148448535	148513681	Intron of CUL1(+):3Kb before exon 3	Intron of EZH2(-):94bp after exon 12	GRCh37	DELETION	EZH2 (NM_004456) Rearrangement:  c.1505+95:EZH2_g.148448535del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	65146	NA	0	9	9	9
P-0029870-T01-IM6	SOMATIC	B2M	TRIM69	15	15	45003923	45037678	Intron of B2M(+):112bp after exon 1	Intron of TRIM69(+):9Kb after exon 1	GRCh37	DELETION	B2M (NM_004048) - TRIM69 (NM_182985) rearrangement: c.67+112:B2M_c.6+8770:TRIM69del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {B2M:TRIM69}	33755	NA	0	3	4	5
P-0029920-T01-IM6	SOMATIC	NME1-NME2	PRKAR1A	17	17	49239734	66511671	Intron of NME1-NME2(+):1Kb after exon 4	Exon 2 of PRKAR1A(+)	GRCh37	DUPLICATION	PRKAR1A (NM_212471) - NME1-NME2 (NM_001018136) rearrangement: c.131:PRKAR1A_c.341+1101:NME1-NME2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PRKAR1A:NME1-NME2}	17271937	NA	0	28	10	28
P-0029945-T01-IM6	SOMATIC	LRRC75A	RARA	17	17	16382458	38511428	Intron of LRRC75A(-):13Kb after exon 1	Intron of RARA(+):86bp before exon 8	GRCh37	INVERSION	FAM211A (NM_001113567) - RARA (NM_000964) rearrangement: c.246+12601:FAM211A_c.1013-87:RARAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LRRC75A:RARA}	22128970	NA	0	5	10	6
P-0029946-T01-IM6	SOMATIC	B2M	RNU5F-1	15	1	45005885	220072784	Intron of B2M(+):2Kb before exon 2	5-UTR of RNU5F-1(+):220Kb before coding start	GRCh37	TRANSLOCATION	B2M (NM_004048) rearrangement.t(1;15)(p34.1;q21.1)(chr1:g.220072784::chr15:g.45005885)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	29
P-0029946-T01-IM6	SOMATIC	PLCG2	PLCG2	16	16	81921230	81929304	Intron of PLCG2(+):2Kb before exon 10	Intron of PLCG2(+):107bp before exon 13	GRCh37	DELETION	PLCG2 (NM_002661) rearrangement: c.766-1547_c.1073-108del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	8074	NA	0	51	10	51
P-0029946-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11141425	11239260	Exon 25 of SMARCA4(+)	Intron of LDLR(+):499bp after exon 16	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.3402:SMARCA4_chr19:g.11239260inv	PRECISE		MANUAL_OK	5to5	-	97835	NA	0	128	10	147
P-0029946-T01-IM6	SOMATIC	EP300	EP300	22	22	41571457	41573191	Intron of EP300(+):793bp before exon 30	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.4780-794_c.5476del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1734	NA	0	159	10	164
P-0029948-T01-IM6	SOMATIC	TRIM33	NUF2	1	1	114969117	163310171	Intron of TRIM33(-):681bp after exon 8	Exon 9 of NUF2(+)	GRCh37	INVERSION	TRIM33 (NM_015906) - NUF2 (NM_031423) rearrangement: c.1420+682:TRIM33_c.624:NUF2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TRIM33:NUF2}	48341054	NA	0	38	10	39
P-0029948-T01-IM6	SOMATIC	CDK6	PPP1R9A	7	7	92247313	94726814	Intron of CDK6(-):72bp after exon 7	Intron of PPP1R9A(+):14Kb before exon 2	GRCh37	INVERSION	CDK6 (NM_001145306) - PPP1R9A (NM_001166161) rearrangement: c.834+73:CDK6_c.1396-13757:PPP1R9Ainv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CDK6:PPP1R9A}	2479501	NA	0	5	0	5
P-0029956-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162244325	162475330	Intron of PARK2(-):37Kb before exon 7	Intron of PARK2(-):124bp before exon 5	GRCh37	DUPLICATION	PARK2 (NM_004562) Rearrangement : c.535-124_735-37385dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	231005	NA	0	8	10	8
P-0029963-T01-IM6	SOMATIC	GABRB3	NTRK3	15	15	26807942	88524626	Intron of GABRB3(-):2Kb before exon 9	Intron of NTRK3(-):41Kb before exon 15	GRCh37	INVERSION	NTRK3 (NM_001012338) Rearrangement : c.836-1619:GABRB3_c.1586-40642:NTRK3inv	PRECISE		MANUAL_OK	3to3	-	61716684	NA	0	16	10	16
P-0030027-T01-IM6	SOMATIC	FANCC	FANCC	9	9	97863937	97903379	3-UTR of FANCC(-):51bp after coding stop	Intron of FANCC(-):6Kb before exon 8	GRCh37	DUPLICATION	FANCC (NM_000136) Rearrangement: c.*52_c.687-5595del	PRECISE		MANUAL_OK	5to3	-	39442	NA	0	38	10	38
P-0030029-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869973	42875772	Intron of TMPRSS2(-):72bp after exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement: c.126+73_c.55+4105del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5799	NA	0	79	10	88
P-0030032-T01-IM6	SOMATIC	TSEN2	SETD2	3	3	12543479	47103750	Intron of TSEN2(+):1Kb before exon 5	Exon 14 of SETD2(-)	GRCh37	INVERSION	TSEN2 (NM_001145392) - SETD2 (NM_014159) Rearrangement: c.309-1282:TSEN2_c.6196:SETD2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TSEN2:SETD2}	34560271	NA	0	94	10	94
P-0030033-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31448645	31449267	Intron of DROSHA(-):8bp after exon 22	Intron of DROSHA(-):120bp after exon 21	GRCh37	INVERSION	DROSHA (NM_013235) Rearrangement: c.2882+9_c.2821+121inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	622	NA	0	23	0	29
P-0030053-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37872589	37874126	Exon 13 of ERBB2(+)	Intron of ERBB2(+):393bp after exon 15	GRCh37	DELETION	ERBB2 (NM_004448) Rearrangement : c.1549_c.1898+393del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1537	NA	0	15	10	17
P-0030056-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486874	57503598	Exon 5 of NAB2(+)	3-UTR of STAT6(-):2Kb after coding stop	GRCh37	INVERSION	NAB2(NM_005967) - STAT6 (NM_003153) Fusion : c.1172:NAB2_c.*3481:STAT6inv	PRECISE		MANUAL_OK	3to3	-	16724	NA	0	212	10	210
P-0007875-T02-IM6	SOMATIC	EZH1	MIR3143	17	6	40872126	27162972	Intron of EZH1(-):164bp after exon 7	IGR: 48Kb before MIR3143(+)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(6;17)(p22.1;q21.2)(chr6:g.27162972::chr17:g.40872126)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0014464-T02-IM6	SOMATIC	NF1	NF1	17	17	29670144	29672195	Exon 48 of NF1(+)	Intron of NF1(+):2Kb after exon 48	GRCh37	DELETION	NF1 (NM_001042492) rearrangement : c.7180_c.7189+2041del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2051	NA	0	28	10	28
P-0027801-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15281494	15309341	Exon 26 of NOTCH3(-)	Intron of NOTCH3(-):952bp before exon 2	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4879_c.119-952del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27847	NA	0	53	10	57
P-0027801-T02-IM6	SOMATIC	TMEM131	INPP4A	2	2	98573201	99180220	Intron of TMEM131(-):29Kb before exon 2	Intron of INPP4A(+):120bp after exon 19	GRCh37	INVERSION	INPP4A (NM_001134224) - TMEM131 (NM_015348) rearrangement: c.2043+120:INPP4A_c.188-29251:TMEM131inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {INPP4A:TMEM131}	607019	NA	0	11	10	11
P-0027801-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76890143	76947483	Exon 17 of ATRX(-)	Intron of ATRX(-):2Kb after exon 6	GRCh37	DUPLICATION	ATRX (NM_000489) rearrangement: c.4751_c.484+1830dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	57340	NA	0	64	10	66
P-0030103-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10591374	10602230	IGR: 5Kb before KEAP1(-)	Intron of KEAP1(-):22bp after exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1325+23_chr19:g.10591374del	PRECISE		MANUAL_OK	3to5	-	10856	NA	0	121	10	124
P-0030107-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875000	42874273	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4157:TMPRSS2_c.40-57456:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999273	NA	0	11	10	12
P-0030109-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37310353	38064146	Intron of SLC25A21(-):27Kb before exon 3	Exon 1 of FOXA1(-)	GRCh37	DUPLICATION	SLC25A21 (NM_030631) - FOXA1 (NM_004496) rearrangement: c.120-27147:SLC25A21_c.32:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	753793	NA	0	4	8	4
P-0030109-T01-IM6	SOMATIC	ITGAE	TP53	17	17	3605902	7579246	IGR: 12Kb before ITGAE(-)	Intron of TP53(-):65bp after exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.375+66:TP53_chr17:g.3605902del	PRECISE		MANUAL_OK	3to5	-	3973344	NA	0	27	10	29
P-0030109-T01-IM6	SOMATIC	ASXL1	EDEM2	20	20	31021628	33684946	Exon 11 of ASXL1(+)	IGR: 18Kb before EDEM2(-)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.1627:ASXL1_chr20:g.33684946del	PRECISE		MANUAL_OK	3to5	-	2663318	NA	0	16	10	17
P-0030109-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875207	42867208	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):703bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2838:TMPRSS2_c.40-58598:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2992001	NA	0	8	10	9
P-0008431-T01-IM5	SOMATIC	ERG	TMPRSS2	21	21	39870163	42872096	Intron of ERG(-): 124bp after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused with ERG exons 4-11) : c.56-1980:TMPRSS2_c.40-52619:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3001933	NA	0	9	9	9
P-0021526-T02-IM6	SOMATIC	LINC01533	KMT2B	19	19	32548661	36222831	IGR: 32Kb before LINC01533(+)	Exon 27 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5460:KMT2B_chr19:g.32548661inv	PRECISE		MANUAL_OK	5to5	-	3674170	NA	0	198	10	265
P-0030086-T01-IM6	SOMATIC	SALRNA3	BCL6	15	3	70798609	187447670	IGR: 109Kb before SALRNA3(+)	Exon 5 of BCL6(-)	GRCh37	TRANSLOCATION	BCL6 (NM_001706) rearrangement: t(3;15)(q27.3;q23)(chr3:g.187447670::chr15:g.70798609)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	107	10	110
P-0030086-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823458	42866765	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):260bp before exon 3	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-5914:ERG_c.127-260:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERG:TMPRSS2}	3043307	NA	0	34	10	35
P-0029892-T03-IM6	SOMATIC	NTRK1	PLEKHA6	1	1	156844239	204214638	Intron of NTRK1(+):47bp after exon 9	Intron of PLEKHA6(-):104bp after exon 14	GRCh37	INVERSION	PLEKHA6 (NM_014935) - NTRK1 (NM_002529) fusion: c.2032+105:PLEKHA6_c.1195+47:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PLEKHA6:NTRK1}	47370399	NA	0	12	10	14
P-0029892-T04-IM6	SOMATIC	NTRK1	PLEKHA6	1	1	156844239	204214638	Intron of NTRK1(+):47bp after exon 9	Intron of PLEKHA6(-):104bp after exon 14	GRCh37	INVERSION	PLEKHA6 (NM_014935) - NTRK1 (NM_002529) fusion: c.2032+105:PLEKHA6_c.1195+47:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PLEKHA6:NTRK1}	47370399	NA	0	91	10	105
P-0029892-T04-IM6	SOMATIC	PTEN	PTEN	10	10	89711910	89723898	Exon 6 of PTEN(+)	Intron of PTEN(+):1Kb before exon 9	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.528_c.1027-1146dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11988	NA	0	27	10	28
P-0010920-T04-IM6	SOMATIC	SETD2	SMARCC1	3	3	47165001	47763909	Exon 3 of SETD2(-)	Intron of SMARCC1(-):2Kb before exon 7	GRCh37	DELETION	SMARCC1 (NM_003074) - SETD2 (NM_014159) rearrangement: c.647-1684:SMARCC1_c.1125:SETD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCC1:SETD2}	598908	NA	0	8	10	8
P-0027368-T02-IM6	SOMATIC	PTCH1	PTCH1	9	9	98221630	98222208	Intron of PTCH1(-):251bp after exon 17	Intron of PTCH1(-):143bp before exon 17	GRCh37	DUPLICATION	PTCH1 (NM_000264) Rearrangement : c.2704-143_c.2887+252dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	578	NA	0	14	10	16
P-0029988-T01-IM6	SOMATIC	TTBK2	TP53BP1	15	15	43207625	43712791	5-UTR of TTBK2(-):170Kb before coding start	Exon 21 of TP53BP1(-)	GRCh37	DUPLICATION	TTBK2(NM_173500) - TP53BP1 (NM_005657) Rearrangement: c.-68+5011:TTBK2_c.4378:TP53BP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TTBK2:TP53BP1}	505166	NA	0	194	10	216
P-0030044-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29684176	128653122	Intron of EWSR1(+):418bp before exon 9	Intron of FLI1(+):1Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - FLI1 (NM_002017) fusion: t(11;22)(q.24.3;q12.2)(chr11:g.128653122::chr22:g.29684176)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	159	10	168
P-0030133-T01-IM6	SOMATIC	TANGO2	NF2	22	22	20027873	30069435	Intron of TANGO2(+):3Kb before exon 3	Exon 12 of NF2(+)	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.1300:NF2_chr22:g.20027873inv	IMPPRECISE		MANUAL_OK	5to5	-	10041562	NA	0	5	0	6
P-0030134-T01-IM6	SOMATIC	AKT2	AKT2	19	19	40736136	40745059	Promoter of AKT2(-):87bp from tx start	Intron of AKT2(-):179bp before exon 8	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.640-179:AKT2_chr19:g.40736136inv	PRECISE		MANUAL_OK	3to3	-	8923	NA	0	8	10	8
P-0030135-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212652757	212653456	Exon 4 of ERBB4(-)	Intron of ERBB4(-):572bp before exon 4	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.422-572_c.549dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	699	NA	0	19	10	19
P-0030140-T01-IM6	SOMATIC	EWSR1	PAX8-AS1	22	2	29692342	114041328	Exon 13 of EWSR1(+)	IGR: 47Kb before PAX8-AS1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(2;22)(q13;q12.2)(chr2:g.114041328::chr22:g.29692342)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	10	17
P-0030184-T01-IM6	SOMATIC	KMT2D	CAPS2	12	12	49433351	75706091	Exon 32 of KMT2D(-)	Intron of CAPS2(-):536bp after exon 8	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.8096:KMT2D_chr12:g.75706091inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	26272740	NA	0	53	10	85
P-0030184-T01-IM6	SOMATIC	ZNF385D-AS2	PBRM1	3	3	22617724	52584627	IGR: 619Kb before ZNF385D-AS2(+)	Exon 29 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement:     c.4386:PBRM1_chr3:g.22617724del	PRECISE		MANUAL_OK	3to5	-	29966903	NA	0	12	10	13
P-0030187-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864991	42874662	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4546:TMPRSS2_c.18+5296:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009671	NA	0	41	10	44
P-0030203-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55090708	55223357	Intron of EGFR(+):4Kb after exon 1	Intron of EGFR(+):165bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+3650_c.890-166del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	132649	NA	0	105	0	498
P-0030203-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268575	55272135	Intron of EGFR(+):305bp before exon 25	Intron of EGFR(+):813bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2947-306_c.3272-814del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3560	NA	0	3	0	4
P-0030208-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55112291	55223335	Intron of EGFR(+):25Kb after exon 1	Intron of EGFR(+):187bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+25233_c.890-188del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	111044	NA	0	106	10	206
P-0030210-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46725920	46740499	Intron of RAD54L(+):149bp after exon 6	Intron of RAD54L(+):110bp after exon 17	GRCh37	DUPLICATION	RAD54L (NM_001142548) rearrangement: c.407+149_c.1869+110dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	14579	NA	0	54	10	59
P-0030210-T01-IM6	SOMATIC	CTCF	CTCF	16	16	67645879	67663220	Exon 4 of CTCF(+)	Intron of CTCF(+):80bp before exon 10	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.807_c.1702-81dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	17341	NA	0	73	10	77
P-0030210-T01-IM6	SOMATIC	ZNRF3	EWSR1	22	22	29318309	29691657	Intron of ZNRF3(+):38Kb after exon 1	Intron of EWSR1(+):571bp before exon 13	GRCh37	DUPLICATION	EWSR1 (NM_013986) - ZNRF3 (NM_001206998) rearrangement: c.1180-572:EWSR1_c.300+38255:ZNRF3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EWSR1:ZNRF3}	373348	NA	0	5	0	6
P-0030213-T01-IM6	SOMATIC	KMT2B	LIN37	19	19	36228097	36244323	Exon 33 of KMT2B(+)	Intron of LIN37(+):169bp after exon 6	GRCh37	DUPLICATION	LIN37 (NM_019104) - KMT2B (NM_014727) rearrangement: c.444+169:LIN37_c.7483:KMT2Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LIN37:KMT2B}	16226	NA	0	58	10	62
P-0030220-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688327	128676517	Intron of EWSR1(+):149bp before exon 12	Intron of FLI1(+):557bp before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128676517::chr22:g.29688327)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	54	10	54
P-0030242-T01-IM6	SOMATIC	LOC102546299	FLT4	5	5	164148002	180044106	IGR: 251Kb before LOC102546299(+)	Intron of FLT4(-):112bp before exon 22	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.3002-112:FLT4_chr5:g.164148002inv	PRECISE		MANUAL_OK	3to3	-	15896104	NA	0	17	10	15
P-0030261-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39889507	42875512	Intron of ERG(-):58Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4365:TMPRSS2_c.39+58079:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2986005	NA	0	114	10	115
P-0030267-T01-IM6	SOMATIC	CPM	FGFR1	12	8	69274149	38272053	Intron of CPM(-):5Kb after exon 3	Intron of FGFR1(-):23bp after exon 16	GRCh37	TRANSLOCATION	CPM (NM_001005502) - FGFR1 (NM_001174067) rearrangement: t(8;12)(q11.23;q15)(chr8:g.38272053::chr12:g.69274149)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGFR1:CPM}	0	NA	0	53	10	52
P-0012630-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39951997	42871596	3-UTR of ERG(-):82Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 3-11): c.56-1480:TMPRSS2_c.-47-4326:ERGdel	PRECISE		MANUAL_OK	3to5	-	2919599	NA	0	22	10	74
P-0012630-T02-IM6	SOMATIC	PIK3R1	KCTD16	5	5	67591142	143970832	Exon 13 of PIK3R1(+)	IGR: 420Kb before KCTD16(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1735_chr5:g.143970832inv	PRECISE		MANUAL_OK	3to3	-	76379690	NA	0	52	10	59
P-0016054-T02-IM6	SOMATIC	MAP3K14	KANSL1	17	17	43363676	44162424	Intron of MAP3K14(-):121bp after exon 5	Intron of KANSL1(-):3Kb before exon 5	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.1151+122:MAP3K14_chr17:g.44162424inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	798748	NA	0	48	10	55
P-0030340-T01-IM6	SOMATIC	INPPL1	PRCP	11	11	71946959	82514632	Exon 25 of INPPL1(+)	IGR: 21Kb before PRCP(-)	GRCh37	INVERSION	INPPL1 (NM_001567): c.2808_chr11:g.82514632inv	PRECISE		MANUAL_OK	3to3	-	10567673	NA	0	6	10	6
P-0030343-T01-IM6	SOMATIC	CBL	CBL	11	11	119148672	119153228	Intron of CBL(+):118bp after exon 7	Intron of CBL(+):2Kb before exon 10	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+118_c.1432-2451del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4556	NA	0	33	10	33
P-0030345-T01-IM6	SOMATIC	FLT3	LOC101927314	13	6	28623849	98003011	Exon 7 of FLT3(-)	5-UTR of LOC101927314(+):154Kb before coding start	GRCh37	TRANSLOCATION	FLT3 (NM_004119) rearrangement: t(6;13)(q16.1;q12.2)(chr6:g.98003011::chr13:g.:28623849)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LOC101927314:FLT3}	0	NA	0	33	10	33
P-0030345-T01-IM6	SOMATIC	NCOR1	RNF112	17	17	16041586	19331269	Intron of NCOR1(-):60bp before exon 13	IGR: 17Kb before RNF112(+)	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.1353-60_chr17:g.19331269inv	PRECISE		MANUAL_OK	3to5	-	3289683	NA	0	24	10	26
P-0015960-T02-IM6	SOMATIC	U2AF2	HIST1H3B	19	6	56181895	26032161	Intron of U2AF2(+):837bp after exon 11	Exon 1 of HIST1H3B(-)	GRCh37	TRANSLOCATION	U2AF2 (NM_007279) - HIST1H3B (NM_003537) rearrangement: t(6;19)(p22.2;q13.42)(chr6:g.26032161::chr19:g.56181895)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {U2AF2:HIST1H3B}	0	NA	0	20	10	61
P-0015960-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882321	42870232	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):116bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.56-116:TMPRSS2_c.40-64777:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987911	NA	0	91	10	150
P-0015960-T02-IM6	SOMATIC	PBRM1	PBRM1	3	3	52676432	52678652	Intron of PBRM1(-):371bp before exon 11	Intron of PBRM1(-):67bp after exon 9	GRCh37	INVERSION	PBRM1 (NM_018313) Rearrangemnet: c.996-371_c.899+68inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	2220	NA	0	3	0	3
P-0028013-T04-IM6	SOMATIC	EWSR1	CREM	22	10	29684902	35491023	Intron of EWSR1(+):127bp after exon 9	Intron of CREM(+):609bp after exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREM (NM_181571) fusion (EWSR1 exon 9 fused to CREM exon 7): t(10;22)(p11.21;q12.2)(chr10:g.35491023::chr22:g.29684902)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:CREM}	0	NA	0	44	10	54
P-0030228-T01-IM6	SOMATIC	IGF1	GLT8D2	12	12	102813382	104403972	Exon 3 of IGF1(-)	Intron of GLT8D2(-):5Kb after exon 4	GRCh37	DUPLICATION	IGF1 (NM_001111285) - GLT8D2 (NM_031302) rearrangement: c.307:IGF1_c.112+4819:GLT8D2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IGF1:GLT8D2}	1590590	NA	0	2	10	2
P-0030232-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27043841	27088635	Intron of ARID1A(+):12Kb before exon 2	Intron of ARID1A(+):7bp before exon 7	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1138-12301_c.2252-8del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	44794	NA	0	51	10	51
P-0030289-T01-IM6	SOMATIC	INSR	INSR	19	19	7122676	7131629	Exon 19 of INSR(-)	Intron of INSR(-):539bp after exon 14	GRCh37	DELETION	INSR (NM_000208) Rearrangement: c.3478_c.2842+540del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8953	NA	0	60	10	65
P-0030322-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71078962	71096043	Intron of FOXP1(-):12Kb after exon 7	Intron of FOXP1(-):49bp after exon 6	GRCh37	DELETION	FOXP1 (NM_001244814) Rearrangement: c.869+11517_c.664+50del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	17081	NA	0	25	10	27
P-0030333-T01-IM6	SOMATIC	CCND1	PICALM	11	11	69456101	85739851	Exon 1 of CCND1(+)	Intron of PICALM(-):2Kb before exon 3	GRCh37	DELETION	CCND1 (NM_053056) Rearrangement: c.20_chr11:g.85739851del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	16283750	NA	0	24	10	24
P-0030333-T01-IM6	SOMATIC	GABRG3	MDC1	15	6	27671033	30675950	Intron of GABRG3(+):55Kb before exon 6	Exon 8 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;15)(p21.32;q12)(chr6:g.30675950::chr15:g.27671033)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	40	10	40
P-0030333-T01-IM6	SOMATIC	ICOSLG	FAM155A	21	13	45656951	107684536	Exon 3 of ICOSLG(-)	IGR: 136Kb before FAM155A(-)	GRCh37	TRANSLOCATION	ICOSLG (NM_015259) Rearrangement: t(12;21)(q33.3;q22.3)(chr13:g.107684536::chr21:g.45656951)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	49	10	48
P-0030363-T01-IM6	SOMATIC	VEGFA	PKHD1	6	6	43749796	51159019	Exon 7 of VEGFA(+)	IGR: 321Kb before PKHD1(-)	GRCh37	DELETION	VEGFA (NM_001171623) Rearrangement : c.649:VEGFA_chr6:g.51159019del	PRECISE		MANUAL_OK	3to5	-	7409223	NA	0	45	10	46
P-0030386-T01-IM6	SOMATIC	MET	PRKAR2A	7	3	116412601	48842917	Intron of MET(+):558bp after exon 14	Intron of PRKAR2A(-):2Kb after exon 2	GRCh37	TRANSLOCATION	MET (NM_000245) - PRKAR2A (NM_004157) Rearrangement : t(3,7)(q31.31,p21.31)(chr3:g.48842917::chr7:g.116412601)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MET:PRKAR2A}	0	NA	0	21	10	20
P-0030408-T01-IM6	SOMATIC	TCEB2	BAP1	16	3	2824342	52438638	Intron of TCEB2(-):1Kb after exon 3	Intron of BAP1(-):36bp before exon 12	GRCh37	TRANSLOCATION	TCEB2 (NM_207013) - BAP1 (NM_004656) rearrangement: t(3;16)(p21.1;p13.3)(chr3:g.52438638::chr16:g.2824342)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TCEB2:BAP1}	0	NA	0	48	10	51
P-0030417-T01-IM6	SOMATIC	IFT27	RAC2	22	22	37176369	37627991	IGR: 8Kb before IFT27(-)	Exon 4 of RAC2(-)	GRCh37	INVERSION	RAC2 (NM_002872) rearrangement: c.269:RAC2_chr22:g.37176369inv	PRECISE		MANUAL_OK	5to5	-	451622	NA	0	5	10	5
P-0030449-T01-IM6	SOMATIC	LINC01186	RUNX1	X	21	46136512	36206846	IGR: 49Kb before LINC01186(-)	Exon 7 of RUNX1(-)	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(21;X)(q22.12;p11.3)(chr21:g.36206846::chrX:g.46136512)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	8	13
P-0030453-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314360	43610911	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):727bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2396:KIF5B_c.2136+727:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296551	NA	0	39	10	52
P-0002841-T04-IM6	SOMATIC	BCAS3	BRIP1	17	17	58855288	59853694	Intron of BCAS3(+):30Kb before exon 7	Intron of BRIP1(-):67bp after exon 14	GRCh37	DELETION	BRIP1 (NM_032043) - BCAS3 (NM_001099432) rearrangement: c.2097+69:BRIP1_c.404-30077:BCAS3del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	998406	NA	0	2	8	2
P-0019765-T02-IM6	SOMATIC	NOTCH3	LARP4B	19	10	15275995	941664	Intron of NOTCH3(-):183bp after exon 31	5-UTR of LARP4B(-):83Kb before coding start	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) - LARP4B (NM_015155) rearrangement: t(10;19)(p15.3;p13.12)(chr10:g.941664::chr19:g.15275995)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	10	10	10
P-0019765-T02-IM6	SOMATIC	BRD4	IDI2	19	10	15376225	1065652	Exon 5 of BRD4(-)	Exon 5 of IDI2(-)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - IDI2 (NM_033261) rearrangement: t(10;19)(p15.3;p13.12)(chr10:g.1065652::chr19:g.15376225)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	87	10	87
P-0019948-T03-IM6	SOMATIC	PPM1D	BCAS3	17	17	58734135	59135365	Exon 5 of PPM1D(+)	Intron of BCAS3(+):17Kb before exon 21	GRCh37	DELETION	PPM1D (NM_003620) - BCAS3 (NM_001099432) rearrangement: c.1193:PPM1D_c.2075-16916:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PPM1D:BCAS3}	401230	NA	0	28	10	30
P-0027193-T03-IM6	SOMATIC	IKBKE	IL20	1	1	206667107	207040748	Intron of IKBKE(+):145bp before exon 21	Exon 4 of IL20(+)	GRCh37	DUPLICATION	IL20 (NM_018724) - IKBKE (NM_014002) Rearrangement : c.398:IL20_c.2046-146:IKBKE	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IL20:IKBKE}	373641	NA	0	8	0	8
P-0030303-T01-IM6	SOMATIC	BRAF	MTRNR2L6	7	7	140487445	142397017	Intron of BRAF(-):61bp before exon 9	IGR: 23Kb before MTRNR2L6(+)	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.1141-61:BRAF_chr9:g.142397017inv	IMPPRECISE		MANUAL_OK	3to3	-	1909572	NA	0	6	0	6
P-0030310-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55109944	55222220	Intron of EGFR(+):23Kb after exon 1	Intron of EGFR(+):375bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+22886_c.889+375del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	112276	NA	0	35	0	266
P-0030371-T01-IM6	SOMATIC	TMEM117	NAB2	12	12	44337589	57485885	Intron of TMEM117(+):423bp before exon 3	Intron of NAB2(+):104bp after exon 2	GRCh37	DUPLICATION	NAB2 (NM_005967) - TMEM117 (NM_032256) Rearrangement : c.957+104:NAB2_c.278-424:TMEM117dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NAB2:TMEM117}	13148296	NA	0	79	10	89
P-0030374-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53228176	53229982	Exon 15 of KDM5C(-)	Intron of KDM5C(-):749bp after exon 14	GRCh37	DELETION	KDM5C (NM_004187) Rearrangement : c.2061+750_c.2226del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1806	NA	0	13	10	13
P-0030381-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860560	42876014	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion : c.55+3863:TMPRSS2_c.18+9727:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015454	NA	0	162	10	168
P-0030382-T01-IM6	SOMATIC	NCOR1	PIGL	17	17	16022786	16151101	Exon 17 of NCOR1(-)	Intron of PIGL(+):14Kb after exon 2	GRCh37	INVERSION	NCOR1 (NM_006311) - PIGL (NM_004278) Rearrangement : c.1866:NCOR1_c.335+13717:PIGLinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NCOR1:PIGL}	128315	NA	0	6	0	7
P-0030418-T01-IM6	SOMATIC	SAE1	BBC3	19	19	47678475	47729653	Intron of SAE1(+):5Kb after exon 6	Intron of BBC3(-):167bp after exon 3	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: c.568+168:BBC3_chr19:g.47678475del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	51178	NA	0	62	10	62
P-0030439-T01-IM6	SOMATIC	TNFAIP3	CDKL4	6	2	138199514	39456472	Intron of TNFAIP3(+):54bp before exon 7	Intron of CDKL4(-):33bp after exon 1	GRCh37	TRANSLOCATION	TNFAIP3 (NM_006290) rearrangement: t(2;6)(p22.1;q23.3)(chr2:g.39456472::chr6:g.138199514)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	19	10	19
P-0030456-T01-IM6	SOMATIC	LOC102467655	PIK3R1	5	5	67290841	67591279	IGR: 195Kb before LOC102467655(+)	Exon 14 of PIK3R1(+)	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement: c.1777:PIK3R1_chr5:g.67290841dup	PRECISE		MANUAL_OK	5to3	-	300438	NA	0	10	10	10
P-0030520-T01-IM6	SOMATIC	CCDC90B	HIST2H3D	11	1	82997912	149785203	Promoter of CCDC90B(-):28Kb from tx start	Exon 1 of HIST2H3D(-)	GRCh37	TRANSLOCATION	HIST2H3D (NM_001123375) rearrangement: t(1;11)(q21.2;q14.1)(chr1:g.149785203::chr11:g.82997912)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HIST2H3D:CCDC90B}	0	NA	0	7	0	14
P-0030527-T01-IM6	SOMATIC	EDF1	TRAF2	9	9	139757686	139815499	Intron of EDF1(-):107bp after exon 3	Exon 9 of TRAF2(+)	GRCh37	DELETION	EDF1 (NM_003792) - TRAF2 (NM_021138) rearrangement: c.291+54:EDF1_c.970:TRAF2del	PRECISE		MANUAL_OK	3to5	-	57813	NA	0	8	10	8
P-0030528-T01-IM6	SOMATIC	ERF	CIC	19	19	42758793	42793126	Intron of ERF(-):336bp after exon 1	Exon 7 of CIC(+)	GRCh37	DELETION	ERF (NM_006494) - CIC (NM_015125) rearrangemnet: c.22+337:ERF_c.1018:CICdel	PRECISE		MANUAL_OK	3to5	-	34333	NA	0	103	10	115
P-0030529-T01-IM6	SOMATIC	ALOXE3	AURKB	17	17	8022494	8110132	Promoter of ALOXE3(-):23Kb from tx start	Exon 6 of AURKB(-)	GRCh37	DUPLICATION	AURKB (NM_004217) rearrangemnet: chr17:g.8022494_c.473:AURKBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ALOXE3:AURKB}	87638	NA	0	10	10	10
P-0009743-T01-IM5	SOMATIC	TP53	TP53	17	17	7576271	7577112	Intron of TP53(-): 582bp after exon 9	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546)  rearrangement: c.993+582_c.826del	IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	841	NA	0	101	0	104
P-0030308-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970909	21985245	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):9Kb after exon 1	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement : c.*93:_c.193+8893del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14336	NA	0	7	10	7
P-0030308-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21970909	21985245	Intron of CDKN2Ap16INK4A(-):9Kb after exon 1	Intron of ARID4B(-):136bp before exon 13	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.449:CDKN2Ap16INK4A_chr9:g.21985245del	PRECISE		MANUAL_OK	3to5	-	14336	NA	NA	7	10	NA
P-0029981-T01-IM6	SOMATIC	BRAF	SPOCK1	7	5	140483862	136401840	Intron of BRAF(-):905bp before exon 10	Intron of SPOCK1(-):2Kb after exon 6	GRCh37	TRANSLOCATION	SPOCK1 (NM_004598) - BRAF (NM_004333) fusion: t(5;7)(q31.2;q34)(chr5:g.136401840::chr7:g.140483862)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SPOCK1:BRAF}	0	NA	0	161	10	173
P-0030279-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29684687	128662512	Exon 9 of EWSR1(+)	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128662512::chr22:g.29684687)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	NA	0	93	10	134
P-0030493-T01-IM6	SOMATIC	TP53	TP53	17	17	7574999	7578335	Intron of TP53(-):966bp before exon 10	Intron of TP53(-):35bp after exon 5	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.559+36_c.994-966del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	3336	NA	0	150	10	157
P-0010977-T03-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48895466	79959249	Intron of TFE3(-):68bp after exon 5	Intron of ASPSCR1(+):5Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused to TFE3 exons 6-10) : t(X;17)(p11.23;q25.3)(chrX:g.48895466::chr17:g.79959249)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	31	10	31
P-0030462-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140429032	140486310	IGR: 5Kb before BRAF(-)	Intron of BRAF(-):1Kb after exon 9	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: chr7:g.140429032_c.1177+1038dup	PRECISE		MANUAL_OK	5to3	-	57278	NA	0	116	10	123
P-0030466-T01-IM6	SOMATIC	DAXX	PTP4A1	6	6	33286599	64186175	Intron of DAXX(-):20bp before exon 8	IGR: 96Kb before PTP4A1(+)	GRCh37	DELETION	DAXX (NM_001141970) rearrangement: c.2200-20_chr6:g.64186175del	PRECISE		MANUAL_OK	3to5	-	30899576	NA	0	10	10	10
P-0030469-T01-IM6	SOMATIC	RAD51D	CDK5RAP3	17	17	33433532	46068807	Intron of RAD51D(-):32bp before exon 3	IGR: 20Kb before CDK5RAP3(+)	GRCh37	DELETION	RAD51D (NM_133629) rearrangement: c.145-32:RAD51D_chr17:g.33433532del	IMPPRECISE		MANUAL_OK	3to5	-	12635275	NA	0	6	0	7
P-0030472-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	72047255	72058539	Intron of NEGR1(-):11Kb after exon 6	Exon 6 of NEGR1(-)	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.901_c.940+11245del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11284	NA	0	14	10	14
P-0030473-T01-IM6	SOMATIC	KDM5A	CACNA1C	12	12	465876	2611555	Intron of KDM5A(-):173bp before exon 6	Intron of CACNA1C(+):2Kb before exon 8	GRCh37	INVERSION	CACNA1C (NM_001129827) - KDM5A (NM_001042603) rearrangement: c.1114-2453:CACNA1C_c.673-173:KDM5Ainv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CACNA1C:KDM5A}	2145679	NA	0	25	10	20
P-0030473-T01-IM6	SOMATIC	CISTR	ERBB3	12	12	54175011	56489595	IGR: 31Kb before CISTR(-)	Intron of ERBB3(+):5bp after exon 17	GRCh37	DUPLICATION	ERBB3 (NM_001982) rearrangement: chr12:g.54175011_c.2055+5dup	PRECISE		MANUAL_OK	5to3	-	2314584	NA	0	58	10	66
P-0030580-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868474	42873112	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2996:TMPRSS2_c.18+1813:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004638	NA	0	62	10	101
P-0030617-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57749990	57752679	3-UTR of PLK2(-):419bp after coding stop	Intron of PLK2(-):92bp after exon 8	GRCh37	DELETION	PLK2 (NM_006622) Rearrangement: c.*420_c.1156+93del	PRECISE		MANUAL_OK	3to5	-	2689	NA	0	17	10	17
P-0030622-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610750	61617514	Intron of RET(+):566bp after exon 11	Intron of CCDC6(-):5Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12 - 20): c.304-5054:CCDC6_c.2136+566:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18006764	NA	0	25	10	34
P-0013299-T01-IM5	SOMATIC	TSC1	COL5A1	9	9	135804243	137690051	Exon 3 of TSC1(-)	Intron of COL5A1(+): 203bp before exon 37	GRCh37	DELETION	TSC1 (NM_000368) - COL5A1 (NM_000093) rearrangement: c.17:TSC1_c.2899-203:COL5A1del	PRECISE		MANUAL_OK	3to5	-	1885808	NA	0	54	46	53
P-0030593-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123239265	123991882	3-UTR of FGFR2(-):105bp after coding stop	Intron of TACC2(+):4Kb after exon 13	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) rearrangement: c.*106:FGFR2_c.2565+1927:TACC2inv	PRECISE		MANUAL_OK	5to5	-	752617	NA	0	191	10	213
P-0030595-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	33427726	33430462	3-UTR of RAD51D(-):245bp after coding stop	Intron of RAD51D(-):10bp after exon 4	GRCh37	INVERSION	RAD51D (NM_133629) Rearrangement: c.*246_c.331+11inv	PRECISE		MANUAL_OK	5to5	-	2736	NA	0	13	10	13
P-0030596-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55193244	55223064	Intron of EGFR(+):17Kb before exon 2	Intron of EGFR(+):458bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII rearrangement: c.89-16735_c.890-459inv	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	29820	NA	0	144	0	150
P-0030596-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268192	55272699	Intron of EGFR(+):86bp after exon 24	Intron of EGFR(+):249bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+86_c.3272-250del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4507	NA	0	56	0	3260
P-0015619-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29685920	128663112	Intron of EWSR1(+):1Kb after exon 9	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 fused to FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128663112::chr22:g.29685920)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	67	10	68
P-0029328-T02-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11940850	11984775	Intron of MAP2K4(+):17Kb after exon 1	Exon 3 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.115+16532_c.321del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	43925	NA	0	12	10	12
P-0030626-T01-IM6	SOMATIC	MST1R	PBRM1	3	3	49933573	52648949	Intron of MST1R(-):33bp before exon 11	Intron of PBRM1(-):417bp after exon 16	GRCh37	DUPLICATION	MST1R (NM_002447) - PBRM1 (NM_018313) rearrangement: c.2650-33_c.1924+418dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MST1R:PBRM1}	2715376	NA	0	21	10	23
P-0030626-T01-IM6	SOMATIC	MDC1	PTP4A1	6	6	30671433	64207942	Exon 10 of MDC1(-)	IGR: 74Kb before PTP4A1(+)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.5527_chr6:g.64207942dup	PRECISE		MANUAL_OK	5to3	-	33536509	NA	0	8	10	9
P-0030641-T01-IM6	SOMATIC	WNT2	PRKCI	7	3	116889371	169997993	IGR: 27Kb before WNT2(-)	Intron of PRKCI(+):21bp before exon 9	GRCh37	TRANSLOCATION	PRKCI (NM_002740) rearrangement: t(3;7)(q26.2;q31.2)(chr3:g.169997993::chr7:g.116889371)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	27
P-0030673-T01-IM6	SOMATIC	EWSR1	DDIT3	22	12	29684813	57911771	Intron of EWSR1(+):38bp after exon 9	5-UTR of DDIT3(-):1Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - DDIT3 (NM_001195054) rearrangement: t(12;22)(q13.3;q12.2)(chr12:g.:57911771::chr22:g.29684813)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:DDIT3}	0	NA	0	28	10	40
P-0030675-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877449	42877973	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 5-11): c.55+1904:TMPRSS2_c.40-59905:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000524	NA	0	48	10	49
P-0030717-T01-IM6	SOMATIC	STAT5A	EZH1	17	17	40439374	40855660	Promoter of STAT5A(+):190bp from tx start	Intron of EZH1(-):97bp after exon 19	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.2098+98:EZH1_chr17:g.40439374del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	416286	NA	0	52	10	53
P-0030721-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266032	41266664	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.29_c.461del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	632	NA	0	59	10	65
P-0002375-T02-IM6	SOMATIC	WT1	TAPT1	11	4	32456161	16168647	Intron of WT1(-):84bp after exon 1	Intron of TAPT1(-):231bp before exon 13	GRCh37	TRANSLOCATION	WT1 (NM_024426) - TAPT1 (NM_153365) rearrangement: t(4;11)(p15.32;p13)(chr4:g.16168647::chr11:g.32456161)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {WT1:TAPT1}	0	NA	0	8	10	8
P-0002375-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831669	42870586	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):470bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-470:TMPRSS2_c.19-14125:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3038917	NA	0	27	0	27
P-0002901-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39866331	42869047	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 999bp after exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002716	NA	0	27	29	29
P-0002901-T01-IM3	SOMATIC	TMPRSS2	NR3C2	21	4	42869155	149213311	Intron of TMPRSS2(-): 891bp after exon 2	Intron of NR3C2(-): 32Kb before exon 3	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (NR3C2-TMPRSS2)	0	NA	0	25	23	0
P-0030592-T01-IM6	SOMATIC	ERCC2	FUT2	19	19	45858145	49195747	Intron of ERCC2(-):36bp before exon 17	IGR: 3Kb before FUT2(+)	GRCh37	DELETION	ERCC2 (NM_000400) Rearrangement: c.1544-36_chr19:g.49195747del	IMPPRECISE		MANUAL_OK	3to5	-	3337602	NA	0	5	0	6
P-0030699-T01-IM6	SOMATIC	JAK3	TRIM29	19	11	17941916	119908524	Intron of JAK3(-):120bp after exon 21	IGR: 73Kb before TRIM29(-)	GRCh37	TRANSLOCATION	JAK3 (NM_000215) rearrangement: t(11;19)(q23.3;p13.11)(chr11:g.119908524::chr19:g.17941916)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	43	10	43
P-0030719-T01-IM6	SOMATIC	KDM5A	ARNTL2	12	12	432924	27528823	Exon 15 of KDM5A(-)	Intron of ARNTL2(+):4Kb before exon 3	GRCh37	INVERSION	ARNTL2 (NM_001248002) - KDM5A (NM_001042603) rearrangement: c.285-4357:ARNTL2_c.1992:KDM5A	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARNTL2:KDM5A}	27095899	NA	0	12	10	12
P-0030727-T01-IM6	SOMATIC	BBC3	CCDC9	19	19	47729919	47775013	Exon 3 of BBC3(-)	3-UTR of CCDC9(+):13Kb after coding stop	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: c.470:BBC3_chr19:g.47775013del	PRECISE		MANUAL_OK	3to5	-	45094	NA	0	10	10	11
P-0030746-T01-IM6	SOMATIC	BRAF	AGK	7	7	140497533	141263715	Intron of BRAF(-):3Kb after exon 7	Intron of AGK(+):8Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion: c.101+8348:AGK_c.980+2629:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	766182	NA	0	49	10	48
P-0030773-T01-IM6	SOMATIC	LINC01533	CIC	19	19	32449624	42796285	IGR: 67Kb before LINC01533(+)	Exon 12 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.2934:CIC_chr19:g.32449624inv	PRECISE		MANUAL_OK	5to5	-	10346661	NA	0	109	10	133
P-0027313-T02-IM6	SOMATIC	GLIS1	JAK1	1	1	54094331	65305384	5-UTR of GLIS1(-):122Kb before coding start	Exon 20 of JAK1(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.2744:JAK1_chr1:g.54094331del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {JAK1:GLIS1}	11211053	NA	0	87	10	92
P-0029448-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684099	128647971	Intron of EWSR1(+):495bp before exon 9	Intron of FLI1(+):4Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 5-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128647971::chr22:g.29684099)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	6	0	6
P-0030745-T01-IM6	SOMATIC	POLE	LOC100507651	12	8	133256566	58136160	Exon 5 of POLE(-)	5-UTR of LOC100507651(+):9Kb before coding start	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(8;12)(q12.1;q24.33)(chr8:g.58136160::chr12:g.133256566)	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	19	0	19
P-0030749-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41225142	41247758	Intron of BRCA1(-):1Kb after exon 14	Intron of BRCA1(-):104bp after exon 9	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.670+105_c.4675+1206del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	22616	NA	0	28	10	29
P-0030749-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48578903	48592061	Intron of SMAD4(+):2Kb before exon 5	Intron of SMAD4(+):85bp after exon 9	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement:  c.455-2248_c.1139+85inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	13158	NA	0	7	10	7
P-0030750-T01-IM6	SOMATIC	FGF19	FGF19	11	11	69514040	69526352	Exon 3 of FGF19(-)	IGR: 13Kb before FGF19(-)	GRCh37	DELETION	FGF19 (NM_005117) rearrangement: c.641:FGF19_chr11:g.69526352del	IMPPRECISE		MANUAL_OK	3to5	-	12312	NA	0	10	0	12
P-0030750-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89343805	89347922	Intron of ANKRD11(-):2Kb after exon 9	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.5028_c.7470+1675del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4117	NA	0	114	10	118
P-0030720-T01-IM6	SOMATIC	DCN	PREX2	12	8	91564661	68965387	Intron of DCN(-):6Kb before exon 3	Exon 9 of PREX2(+)	GRCh37	TRANSLOCATION	PREX2 (NM_024870) - DCN (NM_133503) rearrangement: t(8;12)(q13.2;q21.33)(chr8:g.68965387::chr12:g.91564661)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PREX2:DCN}	0	NA	0	12	10	10
P-0003274-T02-IM6	SOMATIC	RARA	LOC340107	17	5	38510622	25855191	Exon 7 of RARA(+)	IGR: 1Mb before LOC340107(-)	GRCh37	TRANSLOCATION	RARA (NM_000964) Rearrangement : t(5;17)(p14.1;q21.1)(chr5:g.25855191::chr17:g. 38510622)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	49	10	51
P-0003274-T02-IM6	SOMATIC	LINC01194	DROSHA	5	5	13054033	31508760	IGR: 479Kb before LINC01194(+)	Exon 9 of DROSHA(-)	GRCh37	DELETION	DROSHA (NM_013235) Rearrangement : chr5:g.13054033_c.1555:DROSHAdel	PRECISE		MANUAL_OK	3to5	-	18454727	NA	0	67	10	71
P-0004339-T03-IM6	SOMATIC	KMT2C	IQCG	7	3	151860908	197675580	Exon 43 of KMT2C(-)	5-UTR of IQCG(-):59Kb before coding start	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(3;7)(q29;q36.1)(chr3:g.197675580::chr7:g.151860908)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	10	36
P-0019819-T02-IM6	SOMATIC	ZNRF3	EWSR1	22	22	29441077	29684597	Intron of ZNRF3(+):199bp after exon 5	Exon 9 of EWSR1(+)	GRCh37	DUPLICATION	EWSR1 (NM_013986) - ZNRF3 (NM_001206998) rearrangement: c.793+1474:EWSR1_c.744+199:ZNRF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EWSR1:ZNRF3}	243520	NA	0	25	10	29
P-0019819-T02-IM6	SOMATIC	TET2	ARHGEF38	4	4	106180736	106494264	Intron of TET2(+):39bp before exon 7	Intron of ARHGEF38(+):16Kb before exon 2	GRCh37	DUPLICATION	ARHGEF38 (NM_001242729) - TET2 (NM_001127208) rearrangement: c.197-16141:ARHGEF38_c.3804-40:TET2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARHGEF38:TET2}	313528	NA	0	27	10	27
P-0030783-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27056141	27057900	Exon 2 of ARID1A(+)	Exon 3 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1138-1_c.1608del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1759	NA	0	22	10	23
P-0030791-T01-IM6	SOMATIC	AR	AR	X	X	66913665	66943440	Intron of AR(+):8Kb after exon 3	Intron of AR(+):87bp before exon 8	GRCh37	INVERSION	AR (NM_000044) Rearrangement: c.1885+7697_c.2608-88inv	PRECISE		MANUAL_OK	5to5	-	29775	NA	0	15	10	15
P-0030792-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40102198	42867718	IGR: 9Kb before LINC00114(-)	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement: c.127-1213:TMPRSS2_chr21:g.40102198del	PRECISE		MANUAL_OK	3to5	-	2765520	NA	0	42	10	43
P-0030808-T01-IM6	SOMATIC	HMBOX1	ALK	8	2	28904937	29447713	Exon 8 of HMBOX1(+)	Intron of ALK(-):613bp after exon 19	GRCh37	TRANSLOCATION	HMBOX1 (NM_001135726) ALK (NM_004304) Rearrangement : t(2,8)(p23.3,p21.1)(chr2:g.29447713::chr8:g.28904937)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {HMBOX1:ALK}	0	NA	0	115	10	115
P-0030812-T01-IM6	SOMATIC	PTEN	MRPL9	10	1	89725115	151714790	Exon 9 of PTEN(+)	IGR: 17Kb before MRPL9(-)	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(1;10)(q21.3;q23.31)(chr1:g.151714790::chr10:g.89725115)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	17	10	17
P-0030812-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874424	42867559	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1054:TMPRSS2_c.40-56880:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2993135	NA	0	20	10	21
P-0030823-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68347600	68353996	Intron of RAD51B(+):5Kb before exon 6	Intron of RAD51B(+):75bp after exon 7	GRCh37	DUPLICATION	RAD51B (NM_133509) rearrangement: c.453-4986_c.756+75dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	6396	NA	0	29	10	31
P-0030845-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876623	42870695	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):579bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10): c.56-579:TMPRSS2_c.40-59079:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994072	NA	0	70	10	79
P-0030847-T01-IM6	SOMATIC	SMAD4	CSRP1	18	1	48584640	201465436	Intron of SMAD4(+):26bp after exon 6	5-UTR of CSRP1(-):12Kb before coding start	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) Rearrangement: t(1;18)(q32.1;q21.2)(chr1:g.201465436::chr18:g.48584640)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {SMAD4:CSRP1}	0	NA	0	13	0	13
P-0030871-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737016	1808856	Exon 7 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2288:FGFR3_c.1608:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71840	NA	0	30	10	33
P-0030872-T01-IM6	SOMATIC	TET1	SSR3	10	3	70446541	156287710	Intron of TET1(+):77bp after exon 11	IGR: 30Kb before SSR3(-)	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(3;10)(q25.31;q21.3)(chr3:g.156287710::chr10:g.70446541)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	17
P-0030872-T01-IM6	SOMATIC	TMPRSS2	TSPAN4	21	11	42867997	865773	Intron of TMPRSS2(-):1Kb before exon 3	Exon 7 of TSPAN4(+)	GRCh37	TRANSLOCATION	TPAN4 (NM_001025238) - TMPRSS2 (NM_001135099) rearrangement: t(11;21)(p15.5;q22.3)(chr11:g.:865773::chr21:g.42867997)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TSPAN4:TMPRSS2}	0	NA	0	16	10	16
P-0030872-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858126	42872678	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2562:TMPRSS2_c.18+12161:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3014552	NA	0	8	10	13
P-0030872-T01-IM6	SOMATIC	MX1	TMPRSS2	21	21	42821844	42872650	Intron of MX1(+):4Kb after exon 9	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	MX1 (NM_001178046) - TMPRSS2 (NM_001135099) rearrangement: c.1432+622:MX1_c.56-2534:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MX1:TMPRSS2}	50806	NA	0	25	10	25
P-0030872-T01-IM6	SOMATIC	POLDIP3	TMPRSS2	22	21	43009989	42867864	Intron of POLDIP3(-):815bp after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - POLDIP3 (NM_032311) rearrangement: t(21;22)(q22.3;q13.2)(chr21:g.:42867864::chr22:g.43009989)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:POLDIP3}	0	NA	0	32	10	32
P-0004887-T01-IM5	SOMATIC	NFE2L2	ZNF385B	2	2	178098922	180523009	Exon 2 of NFE2L2(-)	Intron of ZNF385B(-): 87Kb after exon 1	GRCh37	DUPLICATION	The NFE2L2 (NM_006164) - ZNF385B (NM_152520) rearrangement: c.123:NFE2L2_c.253+111221:ZNF385Bdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (NFE2L2-ZNF385B)	2424087	NA	0	6	4	6
P-0007699-T02-IM5	SOMATIC	FOXA1	FOXA1	14	14	38061648	38304410	Exon 2 of FOXA1(-)	IGR: 245Kb before FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: chr14:g.38304410_c.341:FOXA1del	PRECISE		MANUAL_OK	3to5	-	242762	NA	0	30	29	30
P-0012051-T01-IM5	SOMATIC	GREM1	SECISBP2L	15	15	33026741	49277656	3-UTR of GREM1(+): 3Kb after coding stop	IGR: 3Kb before SECISBP2L(-)	GRCh37	INVERSION	GREM1 (NM_013372) rearrangement : c.*3295_chr15:g.49277656inv	PRECISE		MANUAL_OK	3to3	-	16250915	NA	0	26	36	26
P-0030660-T01-IM6	SOMATIC	NF1	NF1	17	17	29607457	29657244	Intron of NF1(+):15Kb after exon 36	Intron of NF1(+):69bp before exon 39	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement: c.4835+15100_c.5610-70del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	49787	NA	0	5	0	5
P-0030876-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37871759	37879559	Exon 11 of ERBB2(+)	Intron of ERBB2(+):12bp before exon 17	GRCh37	INVERSION	ERBB2 (NM_004448) Rearrangement: c.1283_c.1947-13inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7800	NA	0	33	10	33
P-0030897-T01-IM6	SOMATIC	HOXB13	HOXB13	17	17	46804803	46805842	Intron of HOXB13(-):398bp before exon 2	Exon 1 of HOXB13(-)	GRCh37	DUPLICATION	HOXB13 (NM_006361) Rearrangement : c.114_c.602-398dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1039	NA	0	7	0	8
P-0030935-T01-IM6	SOMATIC	SMARCA4	COL14A1	19	8	11097142	121126818	Exon 4 of SMARCA4(+)	IGR: 11Kb before COL14A1(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(8;19)(q24.12;p13.2)(chr8:g.121126818::chr19:g.11097142)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	24	10	24
P-0000122-T02-IM6	SOMATIC	STAT3	STAT3	17	17	40470248	40483543	Intron of STAT3(-):1Kb before exon 22	Exon 11 of STAT3(-)	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.1056_c.2102-1006dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	13295	NA	0	153	10	172
P-0006047-T03-IM6	SOMATIC	ROS1	EZR	6	6	117647241	159191332	Intron of ROS1(-):145bp after exon 33	Intron of EZR(-):356bp before exon 10	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1091-356:EZR_c.5557+146:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41544091	NA	0	49	10	51
P-0009401-T02-IM6	SOMATIC	DACT3	H3F3C	19	12	47152928	31945098	Exon 4 of DACT3(-)	Exon 1 of H3F3C(-)	GRCh37	TRANSLOCATION	H3F3C (NM_001013699) rearrangement: t(12;19)(p11.21;q13.32)(chr12:g.31945098::chr19:g.47152928)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	15	10	22
P-0030349-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29683948	128666334	Intron of EWSR1(+):646bp before exon 9	Intron of FLI1(+):9Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128666334::chr22:g.29683948	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	70	10	74
P-0030713-T03-IM6	SOMATIC	CD276	CD276	15	15	74002458	74003492	Intron of CD276(+):428bp after exon 8	Exon 9 of CD276(+)	GRCh37	INVERSION	CD276 (NM_001024736) Rearrangement: c.1546+428_c.1563del	PRECISE		MANUAL_OK	5to5	-	1034	NA	0	8	10	17
P-0030713-T03-IM6	SOMATIC	BCOR	BCOR	X	X	39932309	39966786	Exon 4 of BCOR(-)	5-UTR of BCOR(-):55Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) Rearrangement: c.2290_-40-29564del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	34477	NA	0	55	10	60
P-0030787-T01-IM6	SOMATIC	C8orf37-AS1	RAD21	8	8	96518250	117864104	5-UTR of C8orf37-AS1(+):304Kb before coding start	Intron of RAD21(-):82bp after exon 11	GRCh37	DELETION	RAD21 (NM_006265) Rearrangement: c.1470+83:RAD21_chr8:g.96518250del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	21345854	NA	0	10	10	10
P-0030924-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55113919	55222768	Intron of EGFR(+):27Kb after exon 1	Intron of EGFR(+):754bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+26861_c.890-755del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	108849	NA	0	76	0	326
P-0030929-T01-IM6	SOMATIC	ANKRD26P1	CYLD	16	16	46526382	50814103	3-UTR of ANKRD26P1(-):77Kb after coding stop	Intron of CYLD(+):148bp after exon 8	GRCh37	INVERSION	CYLD (NM_001042355) rearrangement: c.1509+148:CYLD_chr16:g.46526382inv	PRECISE		MANUAL_OK	3to3	-	4287721	NA	0	7	10	19
P-0030954-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55205275	55223159	Intron of EGFR(+):5Kb before exon 2	Intron of EGFR(+):363bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-4704_c.890-364del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	17884	NA	0	9	10	9
P-0031044-T01-IM6	SOMATIC	FGFR3	LOC101929095	4	4	1806386	15330489	Intron of FGFR3(+):139bp after exon 9	3-UTR of LOC101929095(-):99Kb after coding stop	GRCh37	DELETION	FGFR3 (NM_000142) Rearrangement: c.1266+139:FGFR3_chr4:g.15330489del	PRECISE		MANUAL_OK	3to5	-	13524103	NA	0	9	10	8
P-0031056-T01-IM6	SOMATIC	DLGAP1-AS5	TCEB1	18	8	4459373	74859058	IGR: 195Kb before DLGAP1-AS5(+)	Intron of TCEB1(-):3bp before exon 4	GRCh37	TRANSLOCATION	TCEB1 (NM_005648) rearrangement: t(8;18)(q21.11;p11.31)(chr8:g.74859058::chr18:g.4459373)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	10
P-0031057-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226534	2228063	Exon 27 of DOT1L(+)	Intron of DOT1L(+):937bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4014_c.4606+937inv	PRECISE		MANUAL_OK	5to5	-	1529	NA	0	2	8	2
P-0031057-T01-IM6	SOMATIC	CIC	CIC	19	19	42797921	42799051	Exon 16 of CIC(+)	Exon 20 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3973_c.4535inv	IMPPRECISE		MANUAL_OK	5to5	-	1130	NA	0	5	0	5
P-0031100-T01-IM6	SOMATIC	ARID1A	DDAH1	1	1	27093061	85915640	Intron of ARID1A(+):4bp after exon 10	Intron of DDAH1(-):15Kb after exon 1	GRCh37	INVERSION	ARID1A (NM_006015) - DDAH1 (NM_012137) rearrangement: c.2988+4:ARID1A_c.303+14786:DDAH1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ARID1A:DDAH1}	58822579	NA	0	32	10	32
P-0031100-T01-IM6	SOMATIC	PRMT6	NOTCH2	1	1	107065530	120471543	IGR: 534Kb before PRMT6(+)	Intron of NOTCH2(-):55bp after exon 23	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.3892+56:NOTCH2_chr1:g.107065530inv	PRECISE		MANUAL_OK	5to5	-	13406013	NA	0	36	10	36
P-0031100-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31468124	31472202	Exon 17 of DROSHA(-)	Exon 16 of DROSHA(-)	GRCh37	INVERSION	DROSHA (NM_013235) rearrangement: c.2209_c.2288inv	PRECISE		MANUAL_OK	3to3	-	4078	NA	0	76	10	76
P-0030958-T01-IM6	SOMATIC	EP300	EP300	22	22	41572175	41574406	Intron of EP300(+):75bp before exon 30	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) Rearrangement: c.4780-76_c.6691del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2231	NA	0	52	10	56
P-0030962-T01-IM6	SOMATIC	CREBBP	FBXL7	16	5	3929765	15641044	Intron of CREBBP(-):67bp after exon 1	Intron of FBXL7(+):25Kb after exon 2	GRCh37	TRANSLOCATION	CREBBP (NM_004380) Rearrangement:  t(5;16)(p15.1;p13.3)(chr5:g.15641044::chr16:g.3929765)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	84	10	84
P-0005361-T04-IM6	SOMATIC	POLE	TLL1	12	4	133202783	167006085	Exon 46 of POLE(-)	Intron of TLL1(+):6Kb before exon 19	GRCh37	TRANSLOCATION	TLL1 (NM_012464) - POLE  (NM_006231) Rearrangement :  t(4;12)(4q32.3;12q24.33)(chr4:g.167006085::chr12:g.133202783)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TLL1:POLE}	0	NA	0	76	0	76
P-0005361-T04-IM6	SOMATIC	TACC3	FGFR3	4	4	1739300	1809059	Intron of TACC3(+):24bp before exon 10	3-UTR of FGFR3(+):13Kb after coding stop	GRCh37	DUPLICATION	FGFR3 (NM_000142) -TACC3 (NM_006342) Fusion: c.*70:FGFR3_c.1837-25:TACC3dup	PRECISE		MANUAL_OK	5to3	-	69759	NA	0	84	10	93
P-0030713-T02-IM6	SOMATIC	CD276	CD276	15	15	74002458	74003492	Intron of CD276(+):428bp after exon 8	Exon 9 of CD276(+)	GRCh37	INVERSION	CD276 (NM_001024736) rearrangement: c.1546+428_c.1563del	PRECISE		MANUAL_OK	5to5	-	1034	NA	0	8	10	9
P-0030713-T02-IM6	SOMATIC	BCOR	BCOR	X	X	39932309	39966786	Exon 4 of BCOR(-)	5-UTR of BCOR(-):55Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.2290:BCOR_chrX:g.39966786del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	34477	NA	0	29	10	30
P-0030980-T01-IM6	SOMATIC	FAT1	LOC339975	4	4	187557372	187948271	Exon 6 of FAT1(-)	IGR: 277Kb before LOC339975(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3990:FAT1_chr4:g.187948271del	PRECISE		MANUAL_OK	3to5	-	390899	NA	0	5	10	5
P-0030987-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189156	55222508	Intron of EGFR(+):21Kb before exon 2	Intron of EGFR(+):663bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) vIII rearrangement: c.89-20823_c.889+663inv	PRECISE		MANUAL_OK	5to5	-	33352	NA	0	559	10	847
P-0031082-T01-IM6	SOMATIC	PLK2	LOC101929154	5	5	57753047	77184889	Exon 7 of PLK2(-)	5-UTR of LOC101929154(+):70Kb before coding start	GRCh37	DELETION	PLK2 (NM_006622) Rearrangement : c.969:PLK2_chr5:g.77184889del	PRECISE		MANUAL_OK	3to5	-	19431842	NA	0	9	10	9
P-0030917-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29687707	32416003	Intron of EWSR1(+):119bp after exon 10	Intron of WT1(-):2Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-10 fused to WT1 exons 8-10): t(11;;22)(p13;q12.2)(chr11:g.32416003::chr22:g.29687707)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	131	10	130
P-0031188-T01-IM6	SOMATIC	MIR99AHG	CTCF	21	16	17465819	67671612	5-UTR of MIR99AHG(+):516Kb before coding start	Exon 12 of CTCF(+)	GRCh37	TRANSLOCATION	CTCF (NM_006565) rearrangement: t(16;21)(q22.1;q21.1)(chr16:g.:67671612::chr21:g.17465819)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MIR99AHG:CTCF}	0	NA	0	108	10	109
P-0031189-T01-IM6	SOMATIC	NAPA	TSC2	19	16	47992744	2122449	Intron of NAPA(-):223bp after exon 10	Intron of TSC2(+):85bp after exon 20	GRCh37	TRANSLOCATION	TSC2 (NM_00054) rearrangement: t(16;19)(p13.3;q13.32)(chr16:g.2122449::chr19:g.47992744)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	69	10	71
P-0031189-T01-IM6	SOMATIC	TSHZ3	AXL	19	19	31603461	41736947	IGR: 162Kb before TSHZ3(-)	Exon 5 of AXL(+)	GRCh37	INVERSION	AXL (NM_021913) rearrangement: chr19:g.31603461_c.662inv	IMPPRECISE		MANUAL_OK	5to5	-	10133486	NA	0	34	0	34
P-0031193-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55192769	55223241	Intron of EGFR(+):17Kb before exon 2	Intron of EGFR(+):281bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17210_c.890-282del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	30472	NA	0	3	7	3
P-0031193-T01-IM6	SOMATIC	CDKN2B-AS1	TEK	9	9	22111649	27213305	5-UTR of CDKN2B-AS1(+):9Kb before coding start	Intron of TEK(+):176bp before exon 18	GRCh37	DELETION	TEK (NM_000459) rearrangement: chr9:g.22111649_c.2878-177del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CDKN2B-AS1:TEK}	5101656	NA	0	7	10	7
P-0031202-T01-IM6	SOMATIC	UNC5B	ARID1B	10	6	73062411	157505664	3-UTR of UNC5B(+):90Kb after coding stop	Intron of ARID1B(+):95bp after exon 13	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(6;10)(q25.3;q22.1)(chr6:g.157505664::chr10:g.73062411)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	9
P-0031208-T01-IM6	SOMATIC	CBFB	HCCAT5	16	16	67063772	73099214	Intron of CBFB(+):56bp after exon 2	IGR: 27Kb before HCCAT5(+)	GRCh37	INVERSION	CBFB (NM_022845) rearrangement: c.165+56_chr16:g.73099214inv	IMPPRECISE		MANUAL_OK	3to3	-	6035442	NA	0	8	0	8
P-0015961-T02-IM6	SOMATIC	ALK	EML4	2	2	29446526	42501324	Intron of ALK(-):132bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.668-6666:EML4_c.3173-132:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054798	NA	0	49	10	48
P-0030981-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72821365	72822534	Exon 10 of ZFHX3(-)	Exon 10 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.9641_c.10810del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1169	NA	0	15	10	15
P-0030981-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148508471	148515121	Intron of EZH2(-):245bp after exon 16	Exon 10 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.1088_c.1947+246del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6650	NA	0	25	10	25
P-0030982-T01-IM6	SOMATIC	HSD3BP4	NOTCH2	1	1	120093920	120491202	IGR: 13Kb before HSD3BP4(+)	Intron of NOTCH2(-):13bp before exon 17	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.2600-13:NOTCH2_chr1:g.120093920inv	PRECISE		MANUAL_OK	3to3	-	397282	NA	0	11	10	11
P-0030988-T01-IM6	SOMATIC	TRIM24	BRAF	7	7	138264041	140491002	Exon 15 of TRIM24(+)	Intron of BRAF(-):3Kb after exon 8	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.2349:TRIM24_c.1140+3106:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRIM24:BRAF}	2226961	NA	0	25	10	25
P-0031131-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49432027	49440571	Exon 34 of KMT2D(-)	Exon 15 of KMT2D(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) Rearrangement: c.4239_c.9112dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8544	NA	0	19	10	19
P-0031135-T01-IM6	SOMATIC	ERCC4	C16orf52	16	16	14024565	22081707	Intron of ERCC4(+):1bp before exon 5	Intron of C16orf52(+):5Kb before exon 2	GRCh37	DUPLICATION	C16orf52 (NM_001164579) - ERCC4 (NM_005236) Rearrangement: c.107-5101:C16orf52_c.793-2:ERCC4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {C16orf52:ERCC4}	8057142	NA	0	7	10	7
P-0031142-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57747076	57752724	Promoter of PLK2(-):3Kb from tx start	Intron of PLK2(-):47bp after exon 8	GRCh37	DELETION	PLK2 (NM_006622) Rearrangement: c.*3334_c.1156+48del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	5648	NA	0	15	0	16
P-0031153-T01-IM6	SOMATIC	COPS7A	ETV6	12	12	6833024	12038915	Promoter of COPS7A(+):424bp from tx start	Exon 7 of ETV6(+)	GRCh37	INVERSION	ETV6 (NM_001987) Rearrangement: c.1208:ETV6_chr12:g.6833024inv	PRECISE		MANUAL_OK	5to5	-	5205891	NA	0	19	10	21
P-0031155-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737177	1808715	Intron of TACC3(+):125bp after exon 7	Intron of FGFR3(+):54bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused with TACC3 exons 8-16. This includes the kinase domain of FGFR3.): c.2274+54:FGFR3_c.1644+125:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71538	NA	0	20	10	20
P-0018493-T01-IM6	SOMATIC	NF2	NF2	22	22	29992870	30067740	IGR: 7Kb before NF2(+)	Intron of NF2(+):74bp before exon 11	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.1000-75:NF2_chr22:g.29992870del	PRECISE		MANUAL_OK	3to5	-	74870	NA	0	14	10	14
P-0030545-T02-IM6	SOMATIC	EP300	MAP2K2	22	19	41578462	4095405	Promoter of EP300(+):90Kb from tx start	Exon 9 of MAP2K2(-)	GRCh37	TRANSLOCATION	MAP2K2 (NM_030662) rearrangement: t(19;22)(p13.3;q13.2)(chr19:g.4095405::chr22:g.41578462)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	37	10	37
P-0030545-T02-IM6	SOMATIC	LETM1	WHSC1	4	4	1824058	1961244	Intron of LETM1(-):19bp before exon 10	Exon 17 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.3032:WHSC1_chr4:g.1824058del	PRECISE		MANUAL_OK	3to5	-	137186	NA	0	39	10	41
P-0030964-T01-IM6	SOMATIC	VEGFA	VEGFA	6	6	43738659	43742102	5-UTR of VEGFA(+):324bp before coding start	Exon 2 of VEGFA(+)	GRCh37	DELETION	VEGFA (NM_001171623) rearrangement: c.-325_c.91del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3443	NA	0	32	10	32
P-0030966-T01-IM6	SOMATIC	PTPRT	DLG2	20	11	40710690	84071426	Intron of PTPRT(-):33bp before exon 31	Intron of DLG2(-):109Kb before exon 8	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(11;20)(q14.1;q12)(chr11:g.84071426::chr20:g.40710690)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	16
P-0030966-T01-IM6	SOMATIC	SNTG1	AGO2	8	8	50431441	141545699	IGR: 391Kb before SNTG1(+)	Intron of AGO2(-):31bp before exon 17	GRCh37	INVERSION	AGO2 (NM_012154) rearrangement: c.2170-31:AGO2_chr8:g.50431441inv	PRECISE		MANUAL_OK	3to3	-	91114258	NA	0	6	10	5
P-0030969-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157405941	157427935	Exon 6 of ARID1B(+)	Intron of ARID1B(+):4Kb before exon 7	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2183_c.2282-3671del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21994	NA	0	3	5	3
P-0030973-T01-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29688534	46333403	Exon 12 of EWSR1(+)	Intron of CREB3L1(+):472bp before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333403::chr22:g.29688534)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	NA	0	67	10	81
P-0030976-T01-IM6	SOMATIC	KDM6A	BMS1P20	X	22	44919395	22661479	Exon 13 of KDM6A(+)	5-UTR of BMS1P20(+):16Kb before coding start	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(22;X)(q11.22;p11.3)(chr22:g.22661479::chrX:g.44919395)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	40
P-0031001-T01-IM6	SOMATIC	LINC00701	GATA3	10	10	2265238	8100667	IGR: 77Kb before LINC00701(-)	Exon 3 of GATA3(+)	GRCh37	DUPLICATION	GATA3 (NM_002051) rearrangement: c.641:GATA3_chr10:g.2265238dup	PRECISE		MANUAL_OK	5to3	-	5835429	NA	0	92	10	94
P-0031001-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191945	55223268	Intron of EGFR(+):18Kb before exon 2	Intron of EGFR(+):254bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-18034_c.890-255del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31323	NA	0	155	0	517
P-0024954-T02-IM6	SOMATIC	TACC3	FGFR3	4	4	1741353	1808755	Intron of TACC3(+):75bp before exon 11	Intron of FGFR3(+):87bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 11-16): c.2275-88:FGFR3_c.1942-76:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67402	NA	0	29	10	32
P-0031222-T01-IM6	SOMATIC	DNAH2	RARA	17	17	7645914	38512302	Intron of DNAH2(+):331bp before exon 11	Exon 9 of RARA(+)	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.1213:RARA_chr17:g.7645914inv	PRECISE		MANUAL_OK	5to5	-	30866388	NA	0	27	10	54
P-0031265-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41258736	41266585	5-UTR of CTNNB1(+):7Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement: c.-48-6776_c.382del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7849	NA	0	54	10	56
P-0019136-T02-IM6	SOMATIC	NUP155	RICTOR	5	5	37308172	38982096	Intron of NUP155(-):638bp before exon 25	Exon 8 of RICTOR(-)	GRCh37	DUPLICATION	RICTOR (NM_152756) - NUP155 (NM_153485) rearrangement: c.626:RICTOR_c.2768-638:NUP155dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NUP155:RICTOR}	1673924	NA	0	9	10	10
P-0019357-T03-IM6	SOMATIC	NAB2	STAT6	12	12	57488027	57493604	Intron of NAB2(+):367bp before exon 7	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 15-22): c.1469-368:NAB2_c.1690:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5577	NA	0	60	10	60
P-0028541-T02-IM6	SOMATIC	ALK	EML4	2	2	29446922	42477458	Intron of ALK(-):528bp before exon 20	Intron of EML4(+):5Kb after exon 2	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused with ALK exons 20-29): c.208+4631:EML4_c.3173-528:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13030536	NA	0	127	10	124
P-0031178-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859211	42874466	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4350:TMPRSS2_c.18+11076:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015255	NA	0	79	10	90
P-0031235-T01-IM6	SOMATIC	RIT1	CCT3	1	1	155880243	156284694	Exon 3 of RIT1(-)	Intron of CCT3(-):2Kb after exon 10	GRCh37	DUPLICATION	RIT1 (NM_006912) - CCT3 (NM_005998) rearrangement: c.161:RIT1_c.974+2263:CCT3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RIT1:CCT3}	404451	NA	0	16	10	16
P-0031235-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397533	139418738	Intron of NOTCH1(-):100bp after exon 27	Intron of NOTCH1(-):307bp before exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.141-307_c.5167+101del	PRECISE		MANUAL_OK	3to5	Deletion of 25 exons : out of frame	21205	NA	0	77	10	86
P-0031238-T01-IM6	SOMATIC	MTAP	CDKN2A	9	9	21765904	21994139	IGR: 37Kb before MTAP(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.192:CDKN2Ap14ARF_chr9:g.21765904del	PRECISE		MANUAL_OK	3to5	-	228235	NA	0	53	10	57
P-0031241-T01-IM6	SOMATIC	STK11	STK11	19	19	1206879	1207995	5-UTR of STK11(+):33bp before coding start	Intron of STK11(+):793bp after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.-34_c.290+793del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1116	NA	0	5	10	5
P-0031242-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123239432	123987760	Exon 18 of FGFR2(-)	Intron of TACC2(+):237bp after exon 13	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2405:FGFR2_c.7896+237:TACC2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR2:TACC2}	748328	NA	0	1001	0	3271
P-0000120-T02-IM6	SOMATIC	CSMD3	MDM4	8	1	114388613	204507560	Intron of CSMD3(-):60Kb after exon 1	Intron of MDM4(+):124bp after exon 7	GRCh37	TRANSLOCATION	MDM4 (NM_002393) rearrangement: t(1;8)(q32.1;q23.3)(chr1:g.204507560::chr8:g.114388613)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	18	10	18
P-0031284-T01-IM6	SOMATIC	TP53	TP53	17	17	7572997	7578693	Exon 11 of TP53(-)	Intron of TP53(-):139bp before exon 5	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.376-139_c.1112inv	PRECISE		MANUAL_OK	3to3	-	5696	NA	0	79	10	78
P-0031293-T01-IM6	SOMATIC	RB1	RB1	13	13	48920174	48934185	Intron of RB1(+):839bp after exon 4	Exon 7 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.500+839_c.640del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14011	NA	0	31	10	33
P-0031293-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3733757	3778712	Intron of TRAP1(-):2Kb after exon 3	Exon 31 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.6336:CREBBP_c.471+2240:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:TRAP1}	44955	NA	0	3	8	3
P-0003061-T02-IM6	SOMATIC	FKBP9P1	SHQ1	7	3	55694452	72893631	IGR: 54Kb before FKBP9P1(-)	Intron of SHQ1(-):57bp before exon 2	GRCh37	TRANSLOCATION	SHQ1 (NM_018130) rearrangement: t(3;7)(p13;p11.2)(chr3:g.72893631::chr7:g.55694452)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	27
P-0003678-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878784	42867219	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):714bp before exon 3	GRCh37	DELETION	(NM_004449) Fusion (TMPRSS2 exon2 fused with ERG exon4) : c.127-714:TMPRSS2_c.40-61240:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2988435	NA	0	22	10	26
P-0007322-T02-IM6	SOMATIC	RET	CCDC6	10	10	43610268	61593923	Intron of RET(+):84bp after exon 11	Intron of CCDC6(-):2Kb before exon 3	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.454-1512:CCDC6_c.2136+84:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	17983655	NA	0	67	10	83
P-0016131-T03-IM6	SOMATIC	LEUTX	CIC	19	19	40276589	42799285	Exon 3 of LEUTX(+)	Exon 20 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) - LEUTX (NM_001143832) fusion: c.4769:CIC_c.321:LEUTXdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CIC:LEUTX}	2522696	NA	0	126	10	132
P-0021156-T03-IM6	SOMATIC	ARID2	ARID2	12	12	46215072	46224992	Intron of ARID2(+):130bp before exon 6	Intron of ARID2(+):5Kb before exon 7	GRCh37	DUPLICATION	ARID2 (NM_152641): c.638-131_c.706-5380dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	9920	NA	0	8	9	8
P-0027418-T01-IM6	SOMATIC	SLC30A6	MSH6	2	2	32398951	48027664	Intron of SLC30A6(+):180bp before exon 2	Exon 4 of MSH6(+)	GRCh37	INVERSION	MSH6 (NM_000179) rearrangement: c.2542:MSH6_chr2:g.32398951inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15628713	NA	0	14	10	14
P-0027549-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	4094398	4095326	Intron of MAP2K2(-):52bp after exon 10	Intron of MAP2K2(-):59bp after exon 9	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.1092+53_c.1046+60inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	928	NA	0	3	6	3
P-0027549-T01-IM6	SOMATIC	CIC	CIC	19	19	42796849	42797874	Exon 14 of CIC(+)	Exon 16 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3307_c.3926inv	IMPPRECISE		MANUAL_OK	5to5	-	1025	NA	0	5	0	6
P-0027619-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3827899	3830269	Intron of CREBBP(-):112bp after exon 10	Intron of CREBBP(-):463bp after exon 8	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.1823+464_c.2113+113dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	2370	NA	0	3	10	6
P-0027619-T01-IM6	SOMATIC	MET	FOXN2	7	2	116398703	48468349	Intron of MET(+):29bp after exon 9	IGR: 73Kb before FOXN2(+)	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(2;7)(p16.3;q31.2)(chr2:g.48468349::chr7:g.116398703)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	28	10	44
P-0027619-T01-IM6	SOMATIC	DUSP4	CFAP99	8	4	29194947	2448452	Intron of DUSP4(-):19bp before exon 4	Intron of CFAP99(+):1Kb after exon 6	GRCh37	TRANSLOCATION	DUSP4 (NM_001394) rearrangement: t(4;8)(p16.3;p12)(chr4:g.2448452::chr8:g.29194947)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CFAP99:DUSP4}	0	NA	0	62	10	62
P-0027944-T01-IM6	SOMATIC	FADD	EGFR	11	7	70052330	55241077	Exon 2 of FADD(+)	Intron of EGFR(+):260bp after exon 17	GRCh37	TRANSLOCATION	EGFR (NM_005228) - FADD (NM_003824) rearrangement: t(7;11)(p11.2;q13.3)(chr7:g55241077::chr11:g70052330)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EGFR:FADD}	0	NA	0	105	10	124
P-0028007-T01-IM6	SOMATIC	C12orf56	KDR	12	4	64672804	55984933	Intron of C12orf56(-):1Kb before exon 9	Exon 3 of KDR(-)	GRCh37	TRANSLOCATION	C12orf56 (NM_001170633) - KDR (NM_002253) rearrangement: t(4;12)(q12;q14.2)(chr4:g.55984933::chr12:g.64672804)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C12orf56:KDR}	0	NA	0	5	10	5
P-0028017-T01-IM6	SOMATIC	SLC12A4	RAD54L	16	1	67982423	46714267	Intron of SLC12A4(-):361bp before exon 14	Exon 3 of RAD54L(+)	GRCh37	TRANSLOCATION	RAD54L (NM_001142548) rearrangement: t(1;16)(p34.1;q22.1)(chr1:g.46714267::chr16:g.67982423)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	1	85	10	102
P-0028290-T01-IM6	SOMATIC	VGLL2	MTOR	6	1	117494622	11206795	IGR: 92Kb before VGLL2(+)	Exon 32 of MTOR(-)	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;6)(p36.22;q22.1)(chr1:g.11206795::chr6:g.117494622)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	51	10	52
P-0028489-T01-IM6	SOMATIC	EP300	ENDOV	22	17	41554444	78394876	Exon 19 of EP300(+)	Intron of ENDOV(+):1Kb before exon 3	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(17;22)(q25.3;q13.2)(chr17:g.78394876::chr22:g.41554444)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	61	0	104
P-0028676-T01-IM6	SOMATIC	STK11	STK11	19	19	1220465	1229314	Exon 4 of STK11(+)	Promoter of STK11(+):24Kb from tx start	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.558_c.*1739del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8849	NA	0	4	10	5
P-0028989-T01-IM6	SOMATIC	ETV6	GALNT18	12	11	12014281	11366394	Intron of ETV6(+):8Kb after exon 4	Intron of GALNT18(-):4Kb before exon 7	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(11;12)(p15.3;p13.2)(chr11:g.11366394::chr12:g.12014281).	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	132	0	142
P-0028989-T01-IM6	SOMATIC	ARNT2	CASP8	15	2	80780567	202134423	Intron of ARNT2(+):13Kb after exon 5	Intron of CASP8(+):2Kb before exon 3	GRCh37	TRANSLOCATION	CASP8 (c.483-1816) - ARNT2 (NM_014862) rearrangement: t(2;15)(q33.1;q25.1)(chr2:g.202134423::chr15:g.80780567).	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CASP8:ARNT2}	0	NA	0	34	10	35
P-0029301-T01-IM6	SOMATIC	EWSR1	RASL10A	22	22	29691746	29711589	Intron of EWSR1(+):482bp before exon 13	5-UTR of RASL10A(-):2Kb before coding start	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.946-483:EWSR1_chr22:g.29711589del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	19843	NA	0	4	10	4
P-0031005-T01-IM6	SOMATIC	RICTOR	MRPS30	5	5	38950470	44977508	Exon 31 of RICTOR(-)	IGR: 168Kb before MRPS30(+)	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: c.3480:RICTOR_chr5:g.44977508del	PRECISE		MANUAL_OK	3to5	-	6027038	NA	0	47	10	52
P-0031007-T01-IM6	SOMATIC	ERBB2	TNS4	17	17	37866538	38649576	Intron of ERBB2(+):54bp before exon 7	Intron of TNS4(-):3Kb after exon 2	GRCh37	INVERSION	ERBB2 (NM_004448) - TNS4 (NM_032865) rearrangement: c.760-55:ERBB2_c.439+2663:TNS4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ERBB2:TNS4}	783038	NA	0	30	10	30
P-0031007-T01-IM6	SOMATIC	BRIP1	MED13	17	17	59886062	60164321	Exon 7 of BRIP1(-)	IGR: 144Kb before MED13(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.684:BRIP1_chr17:g.60164321inv	PRECISE		MANUAL_OK	3to3	-	278259	NA	0	12	10	12
P-0031030-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89711721	89723611	Intron of PTEN(+):153bp before exon 6	Intron of PTEN(+):1Kb before exon 9	GRCh37	DUPLICATION	PTEN (NM_000314) Rearrangement: c.493-154_c.1027-1433dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	11890	NA	0	22	10	24
P-0031270-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39964618	42867616	3-UTR of ERG(-):69Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Rearrangement: c.127-1111:TMPRSS2_c.-149-7749:ERGdel	PRECISE		MANUAL_OK	3to5	-	2902998	NA	0	44	10	53
P-0031274-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68771478	68813254	Intron of CDH1(+):112bp after exon 1	Intron of CDH1(+):22Kb before exon 3	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.48+112_c.164-22319inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	41776	NA	0	5	0	5
P-0031276-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55200970	55222574	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):729bp after exon 7	GRCh37	DELETION	EGFR vIII (NM_005228) deletion: c.89-9009_c.889+729del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	21604	NA	0	4	0	4
P-0031348-T01-IM6	SOMATIC	DSCAM	TP53	21	17	41959383	7578289	Intron of DSCAM(-):105Kb after exon 3	Exon 6 of TP53(-)	GRCh37	TRANSLOCATION	DSCAM (NM_001389) - TP53 (NM_000546) rearrangement: t(17;21)(p13.1;q22.2)(chr17:g.7578289::chr21:g.41959383)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DSCAM:TP53}	0	NA	0	22	10	22
P-0031351-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27020771	27023608	Promoter of ARID1A(+):2Kb from tx start	Exon 1 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.-2124_c.714inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2837	NA	0	7	10	7
P-0031381-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241102	55269820	Intron of EGFR(+):285bp after exon 17	Intron of EGFR(+):345bp after exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+285_c.3162+345dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28718	NA	0	68	10	70
P-0031404-T01-IM6	SOMATIC	PARP1	C1orf95	1	1	226567979	226662584	Intron of PARP1(-):114bp before exon 10	IGR: 74Kb before C1orf95(+)	GRCh37	DELETION	PARP1 (NM_001618) Rearrangement : c.1301-114:PARP1_chr1:g.226662584del	PRECISE		MANUAL_OK	3to5	-	94605	NA	0	114	10	125
P-0031404-T01-IM6	SOMATIC	UHRF1BP1L	EGFR	12	7	100460508	55270272	Intron of UHRF1BP1L(-):6Kb after exon 12	Exon 27 of EGFR(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) - UHRF1BP1L (NM_015054) Rearrangement :t(7;12)(p11.2;q23.1)(chr7:g.55270272::chr12:g.100460508)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:UHRF1BP1L}	0	NA	0	73	10	89
P-0031406-T01-IM6	SOMATIC	ALK	EML4	2	2	29446425	42505101	Intron of ALK(-):31bp before exon 20	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 with ALK exons 20-29): c.668-2889:EML4_c.3173-31:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058676	NA	0	84	10	85
P-0031409-T01-IM6	SOMATIC	TP53	TP53	17	17	7577127	7581801	Exon 8 of TP53(-)	5-UTR of TP53(-):9Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) Rearrangement : c.-28-1861_c.811dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4674	NA	0	19	10	20
P-0031410-T01-IM6	SOMATIC	TP53BP1	PPIP5K1	15	15	43785118	43827329	Intron of TP53BP1(-):116bp after exon 1	Exon 30 of PPIP5K1(-)	GRCh37	DUPLICATION	TP53BP1 (NM_001141980) - PPIP5K1 (NM_014659) Rearrangement : c.7+117:TP53BP1_c.3770:PPIP5K1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TP53BP1:PPIP5K1}	42211	NA	0	21	10	21
P-0031412-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39839898	42876045	Intron of ERG(-):22Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.55+3832:TMPRSS2_c.19-22354:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3036147	NA	0	157	10	167
P-0031413-T01-IM6	SOMATIC	CEP295	ATM	11	11	93451816	108172202	Intron of CEP295(+):3Kb before exon 19	Intron of ATM(+):172bp before exon 35	GRCh37	DELETION	KIAA1731(NM_033395) -ATM (NM_000051) Rearrangement : c.5750-2662:KIAA1731_ c.5178-173:ATMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CEP295:ATM}	14720386	NA	0	19	10	19
P-0031419-T01-IM6	SOMATIC	ETV6	ZNF733P	12	7	12028600	62515009	Intron of ETV6(+):6Kb after exon 5	IGR: 237Kb before ZNF733P(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) Rearrangement : t(7,12)(q11.21;p13.2) (chr7:g.62515009::chr7:g.12028600)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	169	10	168
P-0031429-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863784	42872684	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 fused to ERG exon 2-10) :c.56-2568:TMPRSS2_c.40-46240:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008900	NA	0	4	10	12
P-0031430-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15268817	15289967	Promoter of NOTCH3(-):2Kb from tx start	Exon 22 of NOTCH3(-)	GRCh37	INVERSION	NOTCH3 (NM_000435) Rearrangement: c.*2656_c.3587inv	PRECISE		MANUAL_OK	3to3	-	21150	NA	0	33	10	32
P-0031431-T01-IM6	SOMATIC	LINC01264	DROSHA	10	5	43479900	31526450	Promoter of LINC01264(-):5Kb from tx start	Exon 4 of DROSHA(-)	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;10)(p13.3;q11.21)(chr5:g.31526450::chr10:g.43479900)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DROSHA:LINC01264}	0	NA	0	47	10	50
P-0031431-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87477518	87486000	Intron of NTRK2(+):2Kb after exon 15	Intron of NTRK2(+):4Kb after exon 16	GRCh37	DUPLICATION	NTRK2 (NM_006180) Rearrangement: c.1444+1516_c.1633+3654del	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	8482	NA	0	54	10	56
P-0031435-T02-IM6	SOMATIC	KMT2C	MNX1-AS1	7	7	151945515	156836534	Exon 14 of KMT2C(-)	IGR: 33Kb before MNX1-AS1(+)	GRCh37	INVERSION	KMT2C (NM_170606) Rearrangement: c.2004:KMT2C_chr7:g.156836534inv	PRECISE		MANUAL_OK	3to3	-	4891019	NA	0	6	10	8
P-0031438-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162615855	162622226	Intron of PARK2(-):6Kb after exon 4	Exon 4 of PARK2(-)	GRCh37	DELETION	PARK2 (NM_004562) Rearrangement: c.471_c.534+6308del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6371	NA	0	5	0	5
P-0031438-T01-IM6	SOMATIC	CDKN2A-AS1	CDKN2A	9	9	21964007	21968276	IGR: 3Kb before CDKN2A-AS1(+)	Intron of CDKN2A(-):35bp before exon 3	GRCh37	DELETION	CDKN2A (NM_000077) Rearrangement: c.458-35:CDKN2A_chr9:g.21964007del	PRECISE		MANUAL_OK	3to5	-	4269	NA	0	13	10	13
P-0031439-T01-IM6	SOMATIC	TRIM33	CSDE1	1	1	114975180	115273042	Intron of TRIM33(-):1Kb after exon 5	Exon 13 of CSDE1(-)	GRCh37	DUPLICATION	TRIM33 (NM_015906) - CSDE1(NM_001130523.2): Rearrangement: c.1040+1059:TRIM33_c.1238:CSDE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRIM33:CSDE1}	297862	NA	0	20	10	35
P-0031444-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12870556	12871663	5-UTR of CDKN1B(+):217bp before coding start	Intron of CDKN1B(+):95bp before exon 2	GRCh37	DELETION	CDKN1B Rearrangement: c.-218_c.476-96del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1107	NA	0	6	10	7
P-0031444-T01-IM6	SOMATIC	LMBRD1	FUBP1	6	1	70438602	78433184	Intron of LMBRD1(-):9Kb after exon 7	Intron of FUBP1(-):126bp after exon 4	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) Rearrangement: t(1;6)(q31.1;q13)(chr1:g.78433184::chr6:g.70438602)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	23	10	23
P-0031445-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56175053	56176824	Intron of MAP3K1(+):125bp after exon 11	Intron of MAP3K1(+):85bp before exon 13	GRCh37	INVERSION	MAP3K1 (NM_005921) Rearrangement: c.2087+125_c.2180-86inv	PRECISE		MANUAL_OK	5to5	-	1771	NA	0	18	10	19
P-0031445-T01-IM6	SOMATIC	CCND3	CCND3	6	6	41904012	41910755	Intron of CCND3(-):167bp before exon 5	Promoter of CCND3(-):8Kb from tx start	GRCh37	DELETION	CCND3 (NM_001760): c.-1368_c.712-167del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	6743	NA	0	8	10	10
P-0031472-T01-IM6	SOMATIC	MAPK1	ZNF280B	22	22	22123686	22766451	Intron of MAPK1(-):77bp before exon 8	IGR: 72Kb before ZNF280B(-)	GRCh37	DELETION	MAPK1 (NM_002745) rearrangement: c.967-77:MAPK1_chr22:g.22766451del	IMPPRECISE		MANUAL_OK	3to5	-	642765	NA	0	10	0	11
P-0031476-T01-IM6	SOMATIC	ROS1	LOC100507487	6	4	117642484	129304386	Exon 35 of ROS1(-)	IGR: 45Kb before LOC100507487(+)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(4;6)(q28.2;q22.1)(chr4:g.129304386::chr6:g.117642484)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	19	0	20
P-0031478-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118374166	118375239	Exon 27 of KMT2A(+)	Exon 27 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.7559_c.8632del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1073	NA	0	6	0	6
P-0031478-T01-IM6	SOMATIC	KDM5C	LOC101928254	X	7	53223929	125243090	Intron of KDM5C(-):9bp before exon 23	IGR: 373Kb before LOC101928254(-)	GRCh37	TRANSLOCATION	KDM5C (NM_004187) rearrangement: t(X:7)(p11.22;q31.33)(chrX:g.53223929::chr7:g.125243090)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	10	15
P-0031490-T01-IM6	SOMATIC	EFHD2	SPEN	1	1	15748399	16258467	Intron of EFHD2(+):4Kb before exon 2	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) Rearrangement: c.5732:SPEN_chr1:g.15748399inv	PRECISE		MANUAL_OK	5to5	-	510068	NA	0	53	10	61
P-0031529-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27023447	27046754	Exon 1 of ARID1A(+)	Intron of ARID1A(+):9Kb before exon 2	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.553_c.1138-9388del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	23307	NA	0	32	10	33
P-0031529-T01-IM6	SOMATIC	CTNNB1	ULK4	3	3	41277908	41286230	Exon 12 of CTNNB1(+)	Promoter of ULK4(-):2Kb from tx start	GRCh37	DUPLICATION	CTNNB1 (NM_001904) rearrangement: c.1872: CTNNB1_chr3:g.41286230dup	PRECISE		MANUAL_OK	5to3	-	8322	NA	0	34	10	37
P-0031535-T01-IM6	SOMATIC	C17orf112	RNF43	17	17	50493839	56440694	IGR: 569Kb before C17orf112(+)	Exon 5 of RNF43(-)	GRCh37	INVERSION	RNF43 (NM_017763) rearrangement: c.524:RNF43_chr17:g.50493839inv	PRECISE		MANUAL_OK	5to5	-	5946855	NA	0	13	10	13
P-0031536-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857273	42869029	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1017:TMPRSS2_c.18+13014:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3011756	NA	0	15	10	15
P-0028611-T02-IM6	SOMATIC	KIAA1549	BRAF	7	7	138541164	140482786	Intron of KIAA1549(-):4Kb before exon 17	Intron of BRAF(-):34bp after exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-16 fused to BRAF exons 11-18): c.5248-4149:KIAA1549_c.1314+35:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1941622	NA	0	35	10	35
P-0030907-T01-IM6	SOMATIC	MARK4	PIK3CD	19	1	45804589	9781425	Intron of MARK4(+):1Kb before exon 17	Intron of PIK3CD(+):76bp before exon 15	GRCh37	TRANSLOCATION	MARK4 (NM_001199867) - PIK3CD (NM_005026) rearrangement: t(1;19)(p36.22;q13.32)(chr1:g.9781425::chr19:g.45804589)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MARK4:PIK3CD}	0	NA	0	10	10	11
P-0030907-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52443739	52445834	Exon 2 of BAP1(-)	Promoter of BAP1(-):11Kb from tx start	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.58:BAP1_chr3:g.52445834del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2095	NA	0	37	10	39
P-0030965-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2122874	2131860	Exon 21 of TSC2(+)	Intron of TSC2(+):61bp after exon 31	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.2245_c.3814+61dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8986	NA	0	71	10	73
P-0030967-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68908168	68942788	Intron of PREX2(+):22Kb before exon 2	Exon 6 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.142-21913_c.600dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	34620	NA	0	5	0	5
P-0031038-T01-IM6	SOMATIC	ETV6	BCL2L14	12	12	12032810	12219924	Intron of ETV6(+):5Kb before exon 6	IGR: 4Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) Rearrangement: c.1010-4569:ETV6_chr12:g.12219924del	PRECISE		MANUAL_OK	3to5	-	187114	NA	0	54	10	57
P-0031092-T01-IM6	SOMATIC	LOC101929058	HIST1H3J	12	6	103580137	27858501	IGR: 35Kb before LOC101929058(+)	Exon 1 of HIST1H3J(-)	GRCh37	TRANSLOCATION	HIST1H3J (NM_003535) rearrangement: t(6;12)(p22.1;q23.2)(chr6:g.27858501::chr12:g.103580137)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	17	10	17
P-0031092-T01-IM6	SOMATIC	NHSL2	HNF1A	X	12	71141897	121434639	Intron of NHSL2(+):11Kb after exon 1	Intron of HNF1A(+):94bp after exon 6	GRCh37	TRANSLOCATION	HNF1A (NM_000545) rearrangement: t(12;X)(q24.31;q13.1)(chr12:g.121434639::chrX:g.71141897)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	39	10	39
P-0031243-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29689487	29696783	Intron of EWSR1(+):892bp after exon 12	Promoter of EWSR1(+):33Kb from tx start	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.945+892_chr22:g.29696783del	PRECISE		MANUAL_OK	5to5	-	7296	NA	0	9	10	17
P-0031461-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10257252	10269561	Intron of DNMT1(-):52bp before exon 27	Intron of DNMT1(-):772bp after exon 16	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1232+773_c.2673-52del	PRECISE		MANUAL_OK	3to5	Deletion of 10 exons : in frame	12309	NA	0	21	10	22
P-0031573-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397527	139439535	Intron of NOTCH1(-):106bp after exon 27	Intron of NOTCH1(-):642bp after exon 1	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.61+643_c.5167+107del	PRECISE		MANUAL_OK	3to5	Deletion of 26 exons : in frame	42008	NA	0	20	10	23
P-0031583-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	16	10	21
P-0018568-T02-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139365807	139391519	Intron of SEC16A(-):619bp after exon 4	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) - SEC16A (NM_014866) rearrangemnet: c.6672:NOTCH1_c.3704+620: SEC16Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	25712	NA	0	6	10	6
P-0026326-T02-IM6	SOMATIC	WT1	WT1	11	11	32372352	32450037	IGR: 37Kb before WT1(-)	Intron of WT1(-):5bp after exon 2	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.769+6:WT1_chr11:g.32372352del	PRECISE		MANUAL_OK	3to5	-	77685	NA	0	3	7	3
P-0026657-T03-IM6	SOMATIC	RB1	RB1	13	13	49039712	49048224	Intron of RB1(+):208bp after exon 23	Intron of RB1(+):698bp after exon 24	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2489+208_c.2520+698del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	8512	NA	0	4	8	4
P-0026657-T03-IM6	SOMATIC	ALK	EML4	2	2	29446952	42553363	Intron of ALK(-):558bp before exon 20	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused to ALK exons 20-29): c.2312:EML4_c.3173-558:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13106411	NA	0	78	10	78
P-0028529-T01-IM6	SOMATIC	ANK3	ROS1	10	6	61807139	117658271	Intron of ANK3(-):5Kb before exon 43	Intron of ROS1(-):63bp after exon 31	GRCh37	TRANSLOCATION	ROS1 (NM_002944)  rearrangement: t(6;10)(q22.1;q21.2)(chr6:g.117658271::chr10:g.:61807139)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	6
P-0030990-T03-IM6	SOMATIC	RET	CCDC6	10	10	43611881	61654940	Intron of RET(+):150bp before exon 12	Intron of CCDC6(-):11Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exon 12-20): c.303+10940:CCDC6_c.2137-151:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18043059	NA	0	85	10	125
P-0030990-T03-IM6	SOMATIC	NUP93	PRIM2	16	6	56864649	57189490	Intron of NUP93(+):52bp after exon 10	Intron of PRIM2(+):412bp after exon 4	GRCh37	TRANSLOCATION	NUP93 (NM_014669) Rearrangement : t(6;16)(p11.1;q13)(chr6:g.57189490::chr16:g.56864649)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	11	10	11
P-0031330-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610353	61662177	Intron of RET(+):169bp after exon 11	Intron of CCDC6(-):4Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20 ): c.303+3703:CCDC6_c.2136+169:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18051824	NA	0	21	10	23
P-0031489-T01-IM6	SOMATIC	INSR	PGPEP1	19	19	7143083	18449247	Exon 12 of INSR(-)	Promoter of PGPEP1(+):2Kb from tx start	GRCh37	INVERSION	INSR (NM_000208) Rearrangement: c.2286:INSR_chr19:g.18449247inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PGPEP1:INSR}	11306164	NA	0	58	10	55
P-0031613-T01-IM6	SOMATIC	EPHA3	PIK3CB	3	3	89474639	138402633	Intron of EPHA3(+):4Kb before exon 12	Intron of PIK3CB(-):4bp before exon 16	GRCh37	INVERSION	EPHA3 (NM_005233) - PIK3CB (NM_006219) rearrangement: c.2075-3617:EPHA2_c.2316-4:PIK3CBinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EPHA3:PIK3CB}	48927994	NA	0	42	0	42
P-0031640-T01-IM6	SOMATIC	NBEAL2	SETD2	3	3	47048057	47164423	Intron of NBEAL2(+):118bp after exon 45	Exon 3 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) Rearrangement: c.1703:SETD2_chr3:g.47048057del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	116366	NA	0	48	10	50
P-0031648-T01-IM6	SOMATIC	NF1	NF1	17	17	29559791	29569518	Exon 26 of NF1(+)	Intron of NF1(+):6Kb after exon 29	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement: c.3388_c.3974+6479del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9727	NA	0	25	10	28
P-0031651-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12003438	12007884	Intron of ETV6(+):3Kb before exon 4	Intron of ETV6(+):1Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.329-2923_c.463+1389del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	4446	NA	0	18	10	19
P-0031657-T01-IM6	SOMATIC	APC	HSD17B4	5	5	112176517	118822534	Exon 16 of APC(+)	Intron of HSD17B4(+):2Kb before exon 8	GRCh37	DELETION	APC (NM_000038) rearrangement: c.5226:APC_chr5:g.118822534del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:HSD17B4}	6646017	NA	0	3	10	4
P-0031660-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8269329	8524981	IGR: 45Kb before PTPRD(-)	Exon 18 of PTPRD(-)	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.623:PTPRD_chr9:g.8269329del	PRECISE		MANUAL_OK	3to3	-	255652	NA	0	47	10	47
P-0031663-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55100461	55222013	Intron of EGFR(+):13Kb after exon 1	Intron of EGFR(+):168bp after exon 7	GRCh37	DELETION	EGFRvIII (NM_005228) intragenic deletion: c.88+13403_c.889+168del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	121552	NA	0	67	10	71
P-0014903-T03-IM6	SOMATIC	IQGAP3	NTRK1	1	1	156483830	156843418	IGR: 11Kb before IQGAP3(-)	Intron of NTRK1(+):6bp before exon 8	GRCh37	DUPLICATION	NTRK1 (NM_002529) Rearrangement : chr1:g.156483830_c.851-7:NTRK1dup	PRECISE		MANUAL_OK	5to3	-	359588	NA	0	50	10	68
P-0030397-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683503	32415425	Intron of EWSR1(+):380bp after exon 8	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32415425::chr22:g.29683503)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {WT1:EWSR1}	0	NA	0	97	10	107
P-0031290-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15281617	15289440	Exon 26 of NOTCH3(-)	Intron of NOTCH3(-):193bp after exon 23	GRCh37	DELETION	NOTCH3 (NM_000435) Rearrangement: c.3837+194_c.4756del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7823	NA	0	31	0	36
P-0031512-T01-IM6	SOMATIC	ATM	ATM	11	11	108114760	108142556	Exon 6 of ATM(+)	Intron of ATM(+):423bp after exon 20	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.577_c.3077+423del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27796	NA	0	10	10	10
P-0031512-T01-IM6	SOMATIC	HPYR1	VEGFA	8	6	133498635	43738643	IGR: 74Kb before HPYR1(-)	5-UTR of VEGFA(+):340bp before coding start	GRCh37	TRANSLOCATION	VEGFA (NM_001171623) rearrangement: t(6;8)(p21.1;q24.22)(chr6:g.43738643;chr8:g.133498635)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	99	10	99
P-0031512-T01-IM6	SOMATIC	SPIN1	ASXL2	9	2	90960962	25967196	IGR: 42Kb before SPIN1(+)	Exon 12 of ASXL2(-)	GRCh37	TRANSLOCATION	ASXL2 (NM_018263) rearrangement: t(2;9)(p22.3;q22.1)(chr2:g.25967196::chr9:g.90960962)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	54	10	60
P-0031513-T01-IM6	SOMATIC	DCUN1D4	PDGFRA	4	4	52727427	55140833	Intron of DCUN1D4(+):2Kb before exon 2	Intron of PDGFRA(+):41bp after exon 11	GRCh37	DELETION	DCUN1D4 (NM_001040402) - PDGFRA (NM_006206) rearrangement: c.26-2176:DCUN1D4_c.1653+41:PDGFRAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {DCUN1D4:PDGFRA}	2413406	NA	0	22	10	23
P-0031513-T01-IM6	SOMATIC	CHIC2	PDGFRA	4	4	54919809	55141045	Intron of CHIC2(-):4Kb before exon 2	Exon 12 of PDGFRA(+)	GRCh37	INVERSION	CHIC2 (NM_012110) - PDGFRA (NM_006206) rearrangement: c.120-4337:CHIC2_c.1691:PDGFRAinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CHIC2:PDGFRA}	221236	NA	0	10	0	10
P-0031513-T01-IM6	SOMATIC	PDGFRA	EXOC1	4	4	55143437	56725808	Intron of PDGFRA(+):117bp before exon 13	Intron of EXOC1(+):768bp before exon 3	GRCh37	DUPLICATION	EXOC1 (NM_001024924) - PDGFRA (NM_006206) rearrangement: c.125-769:EXOC1_c.1787-118:PDGFRAdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EXOC1:PDGFRA}	1582371	NA	0	98	0	99
P-0031719-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39871205	42871355	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG(NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon1 )  : c.56-1239.3:TMPRSS2_c.-901:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3000150	NA	0	17	10	17
P-0031722-T01-IM6	SOMATIC	TERT	TGFBR3	5	1	1295310	92107307	Promoter of TERT(-):42Kb from tx start	IGR: 39Kb before TGFBR3(-)	GRCh37	TRANSLOCATION	TERT (NM_198253) Rearrangement :t(1;5)(p21.3;p15.32)(chr1:g.92107307::chr5:g.1295310)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	38	10	40
P-0031725-T01-IM6	SOMATIC	ETV6	HCN1	12	5	12028148	46092989	Intron of ETV6(+):5Kb after exon 5	IGR: 838Kb before HCN1(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) Rearrangement : t(5;12)(p12;p13.2)(chr5:g.46092989::chr12:g.12028148)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	39	10	38
P-0031726-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139342217	139396839	Intron of SEC16A(-):85bp before exon 26	Exon 28 of NOTCH1(-)	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) Rearrangement: c.6448-85:SEC16A_c.5269:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	54622	NA	0	33	10	33
P-0004892-T02-IM6	SOMATIC	ATAD1	PTEN	10	10	89542369	89720810	Intron of ATAD1(-):2Kb after exon 5	Exon 8 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.961:PTEN_chr10:g.89542369del	PRECISE		MANUAL_OK	3to5	-	178441	NA	0	30	10	52
P-0004892-T02-IM6	SOMATIC	BRCA2	LOC102724957	13	11	32893422	15549672	Exon 3 of BRCA2(+)	IGR: 116Kb before LOC102724957(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(11;13)(p15.2;q13.1)(chr11:g.15549672::chr13:g.32893422)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	18
P-0030948-T02-IM6	SOMATIC	TERT	MED10	5	5	1295388	6376020	Promoter of TERT(-):42Kb from tx start	Intron of MED10(-):1Kb after exon 2	GRCh37	DELETION	MED10 (NM_032286) - TERT (NM_198253) rearrangement: c.206+1259:MED10_c.-284:TERTdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MED10:TERT}	5080632	NA	0	31	10	33
P-0031514-T01-IM6	SOMATIC	ERBB3	BTBD11	12	12	56480982	107847312	Intron of ERBB3(+):378bp before exon 5	Intron of BTBD11(+):67Kb before exon 2	GRCh37	DUPLICATION	BTBD11 (NM_001018072) - ERBB3 (NM_001982) rearrangement: c.1136-66952:BTBD11_c.548-379:ERBB3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BTBD11:ERBB3}	51366330	NA	0	4	10	4
P-0031543-T02-IM6	SOMATIC	NELL1	NOTCH1	11	9	20700811	139397403	Intron of NELL1(+):1Kb after exon 2	Intron of NOTCH1(-):230bp after exon 27	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;11)(q34.3;p15.1)(chr9:g.139397403::chr11:g.20700811)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	109	10	111
P-0031543-T02-IM6	SOMATIC	RIMS2	PARP1	8	1	105225035	226550843	Intron of RIMS2(+):32Kb before exon 18	Exon 21 of PARP1(-)	GRCh37	TRANSLOCATION	PARP1:NM_001618 - RIMS2 (NM_001100117) rearrangement: t(1;8)(q24.12;q22.3)(chr1:g.226550843::chr8:g.105225035)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PARP1:RIMS2}	0	NA	0	13	0	14
P-0031693-T01-IM6	SOMATIC	MACROD2	LATS1	20	6	14939921	150004589	Intron of MACROD2(+):271Kb before exon 6	Exon 4 of LATS1(-)	GRCh37	TRANSLOCATION	LATS1 (NM_004690) rearrangement: t(6;20)(q25.1;p12.1)(chr6:g.150004589::chr20:g.14939921)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	25	10	33
P-0031710-T01-IM6	SOMATIC	MPL	FAF1	1	1	43815119	51229991	Intron of MPL(+):89bp after exon 10	Intron of FAF1(-):20Kb before exon 5	GRCh37	INVERSION	MPL (NM_005373) - FAF1 (NM_007051) Rearrangement : c.1565+89:MPL_c.368-19544:FAF1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MPL:FAF1}	7414872	NA	0	3	10	3
P-0031712-T01-IM6	SOMATIC	TSC2	RNPS1	16	16	2130400	2311390	Intron of TSC2(+):22bp after exon 30	Intron of RNPS1(-):888bp after exon 6	GRCh37	INVERSION	TSC2 (NM_000548) - RNPS1 (NM_006711) Rearrangement : c.3610+22:TSC2_c.676+889:RNPS1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TSC2:RNPS1}	180990	NA	0	19	10	19
P-0031712-T01-IM6	SOMATIC	SRSF2	SRSF2	17	17	74733165	74733986	Exon 1 of SRSF2(-)	Promoter of SRSF2(-):4Kb from tx start	GRCh37	DELETION	SRSF2 (NM_003016) Rearrangement : c.-744_c.78:SRSF2del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	821	NA	0	25	0	25
P-0031714-T01-IM6	SOMATIC	USP12	FLT3	13	13	27509046	28609925	IGR: 131Kb before USP12(-)	Intron of FLT3(-):115bp before exon 12	GRCh37	DELETION	FLT3 (NM_004119) Rearrangement : chr13:g.27509046_c.1419-115del	PRECISE		MANUAL_OK	3to5	-	1100879	NA	0	20	8	21
P-0031714-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56152265	56174836	Intron of MAP3K1(+):161bp before exon 2	Exon 11 of MAP3K1(+)	GRCh37	DELETION	MAP3K1 (NM_005921) Rearrangement : c.483-162_c.1995del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22571	NA	0	7	0	7
P-0031716-T01-IM6	SOMATIC	ETV6	PDE7B	12	6	12022761	136143760	Exon 5 of ETV6(+)	IGR: 29Kb before PDE7B(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) Rearrangement : t(6;12)(q23.2;p13.2)(chr6:g.136143760::chr12:g.12022761)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	10	28
P-0031737-T01-IM6	SOMATIC	EP300	TEF	22	22	41574365	41791474	Exon 31 of EP300(+)	Intron of TEF(+):274bp before exon 4	GRCh37	DUPLICATION	TEF (NM_003216) - EP300 (NM_001429) rearrangement: c.697-275:TEF_c.6650:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TEF:EP300}	217109	NA	0	7	10	7
P-0031751-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8334143	8340411	Intron of PTPRD(-):2Kb before exon 44	Exon 42 of PTPRD(-)	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.5185_c.5380-2407del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6268	NA	0	36	10	36
P-0031756-T01-IM6	SOMATIC	FERMT3	RPS6KA4	11	11	63990315	64126817	Intron of FERMT3(+):204bp before exon 14	Intron of RPS6KA4(+):32bp before exon 2	GRCh37	DELETION	FERMT3 (NM_031471) - RPS6KA4 (NM_003942) rearrangement: c.1671-205:FERMT3_c.56-33:RPS6KA4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FERMT3:RPS6KA4}	136502	NA	0	41	10	41
P-0031759-T01-IM6	SOMATIC	RB1	CYSLTR2	13	13	48941658	49280131	Exon 10 of RB1(+)	Promoter of CYSLTR2(+):819bp from tx start	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.968:RB1_chr13:g.49280131dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CYSLTR2:RB1}	338473	NA	0	16	10	16
P-0031759-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72795012	72830453	IGR: 22Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: chr16:g.72795012_c.6128del	PRECISE		MANUAL_OK	3to5	-	35441	NA	0	13	10	13
P-0031759-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1806924	1808140	Intron of FGFR3(+):157bp before exon 11	Intron of FGFR3(+):86bp after exon 15	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.1413-15_c.2030+86del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	1216	NA	0	18	10	18
P-0031637-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29686066	51200430	Intron of EWSR1(+):1Kb after exon 9	Intron of ATF1(+):3Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.13;q12.2)(chr12:g.51200430::chr22:g.29686066)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	29	10	29
P-0031689-T01-IM6	SOMATIC	MAP3K5	ARID1B	6	6	136993404	157527554	Intron of MAP3K5(-):3Kb before exon 8	Exon 20 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) - MAP3K5 (NM_005923) rearrangement: c.5279:ARID1B_c.1254-2871:MAP3K5inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1B:MAP3K5}	20534150	NA	0	66	10	66
P-0031757-T01-IM6	SOMATIC	CCND2	KCNA5	12	12	4385517	5215914	Intron of CCND2(+):131bp after exon 2	IGR: 63Kb before KCNA5(+)	GRCh37	DELETION	CCND2 (NM_001759) rearrangement: c.411+131_chr12:g.5215914del	PRECISE		MANUAL_OK	3to5	-	830397	NA	0	36	10	36
P-0031827-T01-IM6	SOMATIC	ALK	EML4	2	2	29446700	42527708	Intron of ALK(-):306bp before exon 20	Intron of EML4(+):672bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-673:EML4_c.3173-306:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081008	NA	0	11	10	11
P-0031830-T01-IM6	SOMATIC	CALR	LOC101929550	19	8	13050871	36084274	Exon 4 of CALR(+)	IGR: 555Kb before LOC101929550(-)	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(8;19)(p12;p13.2)(chr8:g.36084274::chr19:g.13050871)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	18
P-0031844-T01-IM6	SOMATIC	MDM2	CNOT2	12	12	69214224	70704763	Intron of MDM2(+):70bp after exon 5	Exon 4 of CNOT2(+)	GRCh37	DELETION	MDM2 (NM_002392) - CNOT2 (NM_014515) Rearrangement : c.358+70:MDM2_c.137:CNOT2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MDM2:CNOT2}	1490539	NA	0	136	10	210
P-0031845-T01-IM6	SOMATIC	NUP93	MIR138-2	16	16	56867173	56887735	Exon 13 of NUP93(+)	IGR: 5Kb before MIR138-2(+)	GRCh37	DELETION	NUP93 (NM_014669) Rearrangement : c.1392_chr16:g.56887735del	PRECISE		MANUAL_OK	3to5	-	20562	NA	0	19	10	19
P-0121479-T01-IM6	SOMATIC	STK11	KRT15	19	17	1226342	39677305	Intron of STK11(+):110bp before exon 9	Promoter of KRT15(-):7Kb from tx start	GRCh37	TRANSLOCATION	KRT15 (NM_002275)- STK11 (NM_000455) Rearrangement : t(17,19)(q21.1,p13.3)(chr17:g.39677305::chr19:g.1226342)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {KRT15:STK11}	0	NA	0	36	0	36
P-0031867-T01-IM6	SOMATIC	IGF1R	SCD5	15	4	99473532	83693428	Exon 15 of IGF1R(+)	Intron of SCD5(-):26Kb after exon 1	GRCh37	TRANSLOCATION	IGF1R (NM_000875) - SCD5(NM_001037582) rearrangement: t(4;15)(q21.22;q26.3)(chr4:g.83693428::chr15:g.99473532)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {IGF1R:SCD5}	0	NA	0	11	10	11
P-0031867-T01-IM6	SOMATIC	HIST1H3B	OR2B6	6	6	26032032	27903738	Exon 1 of HIST1H3B(-)	IGR: 21Kb before OR2B6(+)	GRCh37	DELETION	HIST1H3B (NM_003537) rearrangement: c.257:HIST1H3B_chr6:g.27903738del	PRECISE		MANUAL_OK	3to5	-	1871706	NA	0	12	10	12
P-0031868-T01-IM6	SOMATIC	MAST4	CSDE1	5	1	66058605	115282496	Intron of MAST4(+):3Kb after exon 2	Exon 4 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;5)(p13.2;q12.3)(chr1:g.115282496::chr5:g.66058605)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	23	10	22
P-0031871-T01-IM6	SOMATIC	LINC01137	MPL	1	1	37865724	43805217	IGR: 55Kb before LINC01137(-)	Exon 4 of MPL(+)	GRCh37	INVERSION	MPL (NM_005373) rearrangement: c.667:MPL_chr1:g.37865724inv	PRECISE		MANUAL_OK	5to5	-	5939493	NA	0	58	10	67
P-0031874-T01-IM6	SOMATIC	EWSR1	TGIF1	22	18	29687574	3359987	Exon 10 of EWSR1(+)	IGR: 52Kb before TGIF1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(18;22)(p11.31;q12.2)(chr18:g.3359987::chr22:g.29687574)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	34	0	36
P-0031881-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11093573	11170417	5-UTR of SMARCA4(+):1Kb before coding start	Intron of SMARCA4(+):11bp before exon 33	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.-31-1224_c.4636-12del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	76844	NA	0	41	10	45
P-0031882-T01-IM6	SOMATIC	SHANK2	INPPL1	11	11	70501515	71942656	Intron of SHANK2(-):4Kb after exon 2	Exon 13 of INPPL1(+)	GRCh37	DUPLICATION	INPPL1 (NM_001567) rearrangement: c.1612:INPPL1_chr11:g.70501515dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	1441141	NA	0	42	10	44
P-0031888-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55145492	55221743	Intron of EGFR(+):58Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+58434_c.787del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	76251	NA	0	30	10	1386
P-0031891-T01-IM6	SOMATIC	PTEN	KCNB2	10	8	89690932	73786031	Intron of PTEN(+):86bp after exon 4	Intron of KCNB2(+):62Kb before exon 3	GRCh37	TRANSLOCATION	PTEN (NM_000314) - KCNB2 (NM_004770) rearrangement: t(8;10)(q13.3;q23.31)(chr8:g.73786031::chr10:g.89690932)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PTEN:KCNB2}	0	NA	0	7	0	7
P-0031891-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57480535	57484217	Exon 6 of GNAS(+)	Exon 7 of GNAS(+)	GRCh37	DELETION	GNAS (NM_000516) rearrangement: c.530_c.531del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3682	NA	0	2	7	2
P-0031891-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47006856	47019554	Exon 2 of RBM10(+)	Intron of RBM10(+):9Kb before exon 3	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.171_c.213-9160del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12698	NA	0	4	8	4
P-0025017-T01-IM6	SOMATIC	TMPRSS2	LINC00376	21	13	42879521	63655835	Intron of TMPRSS2(-):355bp after exon 1	IGR: 101Kb before LINC00376(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(13;21)(q21.31;q22.3)(chr13:g.63655835::chr21:g.42879521)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	8
P-0028868-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268770	55271424	Intron of EGFR(+):110bp before exon 25	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) Rearrangement: c.2947-111_c.3271+1106del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2654	NA	0	53	0	61
P-0031852-T01-IM6	SOMATIC	KMT2B	PTOV1-AS1	19	19	36209155	50354530	Exon 1 of KMT2B(+)	3-UTR of PTOV1-AS1(-):403bp after coding stop	GRCh37	INVERSION	KMT2B (NM_014727) Rearrangement: c.235:KMT2B_chr19:g.50354530inv	PRECISE		MANUAL_OK	3to3	-	14145375	NA	0	3	8	3
P-0031860-T01-IM6	SOMATIC	WHSC1L1	TACC1	8	8	38205169	38708526	Exon 2 of WHSC1L1(-)	3-UTR of TACC1(+):63Kb after coding stop	GRCh37	DELETION	WHSC1L1 (NM_023034) Rearrangement: c.521:WHSC1L1_chr8:g.38708526del	PRECISE		MANUAL_OK	3to5	-	503357	NA	0	61	10	217
P-0031921-T01-IM6	SOMATIC	BLM	FES	15	15	91312718	91431851	Exon 12 of BLM(+)	Intron of FES(+):684bp before exon 4	GRCh37	DUPLICATION	FES (NM_002005) - BLM (NM_000057) rearrangement: c.669-685:FES_c.2457:BLMdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FES:BLM}	119133	NA	0	11	10	11
P-0031921-T01-IM6	SOMATIC	CCNE1	LMNA	19	1	30313106	156101120	Intron of CCNE1(+):40bp before exon 10	Intron of LMNA(+):556bp after exon 3	GRCh37	TRANSLOCATION	LMNA (NM_170707) - CCNE1 (NM_001238) rearrangement: t(1;19)(q22;q12)(chr1:g.156101120::chr19:g.30313106)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {LMNA:CCNE1}	0	NA	0	14	10	15
P-0031928-T01-IM6	SOMATIC	PSMA6	NFKBIA	14	14	35810679	35872429	IGR: 49Kb before PSMA6(+)	Exon 3 of NFKBIA(-)	GRCh37	DUPLICATION	NFKBIA (NM_020529) rearrangement: chr14:g.35810679_c.474dup	PRECISE		MANUAL_OK	5to3	-	61750	NA	0	31	10	37
P-0031827-T02-IM6	SOMATIC	ALK	EML4	2	2	29446646	42527742	Intron of ALK(-):252bp before exon 20	Intron of EML4(+):638bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1490-639:EML4_c.3173-252:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081096	NA	0	87	10	87
P-0031933-T01-IM6	SOMATIC	TP53	EPHX4	17	1	7576552	92527773	Intron of TP53(-):300bp after exon 9	Intron of EPHX4(+):838bp before exon 7	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(1;17)(p22.1;p13.1)(chr1:g.9252773::chr17:g.7576552)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	84	10	87
P-0031939-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71008498	71089948	Exon 17 of FOXP1(-)	Intron of FOXP1(-):530bp after exon 7	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement:c.869+531_ c.1934del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	81450	NA	0	18	10	18
P-0031409-T02-IM6	SOMATIC	TP53	TP53	17	17	7577127	7581801	Exon 8 of TP53(-)	5-UTR of TP53(-):9Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.-28-1861_c.811dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4674	NA	0	13	10	14
P-0031864-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21971407	22002380	Intron of CDKN2A(-):200bp before exon 2	Promoter of CDKN2B(-):521bp from tx start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.151-200:CDKN2Ap16INK4A_chr9:g.22002380del CDKN2Ap14ARF (NM_058195) rearrangement : c.194-200:CDKN2Ap14ARF_chr9:g.22002380del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CDKN2B:CDKN2A}	30973	NA	0	9	10	10
P-0031952-T01-IM6	SOMATIC	AXL	AXL	19	19	41765825	41769578	3-UTR of AXL(+):41Kb after coding stop	Promoter of AXL(+):44Kb from tx start	GRCh37	INVERSION	AXL (NM_021913) Rearrangemnet: c.*16_c.*3769inv	PRECISE		MANUAL_OK	3to3	-	3753	NA	0	21	10	21
P-0032014-T01-IM6	SOMATIC	NTRK3	NTRK3	15	15	88406573	88669429	IGR: 13Kb before NTRK3(-)	Intron of NTRK3(-):72bp after exon 13	GRCh37	DELETION	NTRK3 (NM_001012338) rearrangement: c.1396+73:NTRK3_chr15:g.88406573del	PRECISE		MANUAL_OK	3to5	-	262856	NA	0	38	10	38
P-0032025-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55102516	55222328	Intron of EGFR(+):15Kb after exon 1	Intron of EGFR(+):483bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+15458_c.88+15458del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	119812	NA	0	30	0	657
P-0032027-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819092	42866329	Intron of ERG(-):2Kb before exon 2	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon3 with ERG exon2) : c.303:TMPRSS2_c.19-1548:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3047237	NA	0	124	0	136
P-0032027-T01-IM6	SOMATIC	GALNTL5	KMT2C	7	7	151681695	151851332	Intron of GALNTL5(+):1Kb after exon 4	Intron of KMT2C(-):19bp after exon 47	GRCh37	DELETION	KMT2C (MLL3) (NM_170606) Rearrangement : c.12139+20:KMT2C_chr7:g.151681695del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	169637	NA	0	86	10	88
P-0032044-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176145143	176153769	Exon 3 of RFWD2(-)	Exon 2 of RFWD2(-)	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.467_c.468del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8626	NA	0	4	10	7
P-0032044-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47034488	47035896	Exon 6 of RBM10(+)	Intron of RBM10(+):2bp before exon 7	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.768_c.772-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1408	NA	0	3	10	3
P-0032046-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876503	42875015	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4862:TMPRSS2_c.40-58959:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2998512	NA	0	4	10	4
P-0032051-T01-IM6	SOMATIC	GRAMD4	NOTCH3	22	19	47017068	15299593	IGR: 6Kb before GRAMD4(+)	Intron of NOTCH3(-):206bp after exon 8	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(19;22)(p13.12;q13.31)(chr19:g.15299593::chr22:g.47017068)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	5
P-0032033-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60419538	123241685	Intron of BICC1(+):39Kb after exon 2	Intron of FGFR2(-):2Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) Fusion (FGFR2 exon 18 fused with BICC1 exon3) : c.2301+1527:FGFR2_c.237+38877:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62822147	NA	0	55	10	65
P-0005631-T02-IM6	SOMATIC	CAAP1	TEK	9	9	26890575	27204772	Intron of CAAP1(-):2Kb after exon 1	Intron of TEK(+):136bp before exon 14	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.2210-137:TEK_chr9:g.26890575del	PRECISE		MANUAL_OK	3to5	-	314197	NA	0	11	10	11
P-0018565-T02-IM6	SOMATIC	BRCA2	BRCA2	13	13	32914670	32916212	Exon 11 of BRCA2(+)	Intron of BRCA2(+):879bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.6178_c.6841+879del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1542	NA	0	7	10	9
P-0031994-T01-IM6	SOMATIC	TP53BP1	TTC8	15	14	43739706	89311583	Intron of TP53BP1(-):23bp before exon 13	Intron of TTC8(+):4Kb after exon 6	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) rearrangement: t(14;15)(q31.3;q15.3)(chr14:g.89311583::chr15:g.43739706)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	16	0	17
P-0031996-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68301796	68302761	Exon 4 of RAD51B(+)	Intron of RAD51B(+):848bp after exon 4	GRCh37	INVERSION	RAD51B (NM_133509) rearrangement: c.199-1_c.315+848del	PRECISE		MANUAL_OK	5to5	-	965	NA	0	15	10	15
P-0031996-T01-IM6	SOMATIC	EWSR1	ALG10B	22	12	29684857	37879543	Intron of EWSR1(+):82bp after exon 9	IGR: 831Kb before ALG10B(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(12;22)(q11;q12.2)(chr12:g.37879543::chr22:g.29684857)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	23	0	69
P-0005636-T02-IM6	SOMATIC	FLT3	FLT3	13	13	28588217	28589205	Intron of FLT3(-):371bp after exon 23	Intron of FLT3(-):88bp after exon 22	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.2753+89_c.2859+372del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	988	NA	0	7	10	7
P-0005636-T02-IM6	SOMATIC	RNF43	RNF43	17	17	56434555	56436677	Intron of RNF43(-):273bp after exon 9	Intron of RNF43(-):493bp before exon 9	GRCh37	INVERSION	RNF43 (NM_017763) rearrangement: c.953-493_c.2308+274inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2122	NA	0	2	4	2
P-0005636-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834655	42875117	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4760:TMPRSS2_c.19-17111:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040462	NA	0	70	10	72
P-0008954-T01-IM5	SOMATIC	NCRNA00114	TMPRSS2	21	21	40099405	42870999	IGR: 11Kb before NCRNA00114(-)	Intron of TMPRSS2(-): 883bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_00113509) rearrangement: c.56-883:TMPRSS2_chr21:g.40099405del	PRECISE		MANUAL_OK	3to5	-	2771594	NA	0	102	82	105
P-0013091-T02-IM6	SOMATIC	RGS2	CDC73	1	1	192830700	193202167	IGR: 53Kb before RGS2(+)	Exon 14 of CDC73(+)	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.1199:CDC73_chr1:g.192830700del	IMPPRECISE		MANUAL_OK	3to5	-	371467	NA	0	18	0	18
P-0013486-T02-IM6	SOMATIC	COLEC12	YES1	18	18	474407	756784	Intron of COLEC12(-):6Kb after exon 2	Exon 2 of YES1(-)	GRCh37	DUPLICATION	COLEC12 (NM_130386) - YES1 (NM_005433) rearrangement: c.58+6300:COLEC12_c.44:YES1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {COLEC12:YES1}	282377	NA	0	44	10	46
P-0014467-T01-IM6	SOMATIC	KCNJ6	TMPRSS2	21	21	38949621	42861602	IGR: 47Kb before KCNJ6(-)	Intron of TMPRSS2(-): 82bp before exon 4	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) Rearrangement : c.350-82:TMPRSS2_chr21:g.38949621dup	PRECISE		MANUAL_OK	5to3	-	3911981	NA	0	14	27	14
P-0016507-T04-IM6	SOMATIC	NTRK3	ETV6	15	12	88488820	12023709	Intron of NTRK3(-):5Kb before exon 15	Intron of ETV6(+):806bp after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused to NTRK3 exons 15-20 ): t(12;15)(p13.2;q25.3)(chr12:g.12023709::chr15:g.88488820)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	236	10	236
P-0016507-T04-IM6	SOMATIC	CDK12	STAT5B	17	17	37672113	40354107	Intron of CDK12(+):52bp after exon 9	Intron of STAT5B(-):225bp before exon 19	GRCh37	DELETION	CDK12 (NM_016507) - STAT5B (NM_012448) rearrangement: c.2846+52:CDK12_c.2238-225:STAT5Bdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2681994	NA	0	59	10	60
P-0019341-T02-IM6	SOMATIC	SNORD109A	TP53BP1	15	15	25550206	43749055	IGR: 27Kb before SNORD109A(+)	Exon 12 of TP53BP1(-)	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: g.25550206_c.1751:TP53BP1inv	PRECISE		MANUAL_OK	3to3	-	18198849	NA	0	42	10	41
P-0019341-T02-IM6	SOMATIC	MTAP	CDKN2A	9	9	21842696	21974432	Intron of MTAP(+):5Kb after exon 5	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	INVERSION	CDKN2A (NM_000077) - MTAP (NM_002451) rearrangement:c.150+245:CDKN2A_c.450+4687:MTAPinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CDKN2A:MTAP}	131736	NA	0	50	10	56
P-0024797-T02-IM6	SOMATIC	TBK1	SPEN	12	1	64915315	16261055	IGR: 69Kb before TBK1(+)	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) Rearrangement: t(1;12)(p36.13; q14.3)(chr1:g.16261055::chr12:g.64915315)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	37	10	37
P-0026821-T05-IM6	SOMATIC	ITFG1	NOTCH2	16	1	47284570	120464783	Intron of ITFG1(-):8Kb after exon 12	Intron of NOTCH2(-):75bp after exon 28	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) Rearrangement : t(1;16)(p13.1;q12.1)(chr1:g.120464783::chr16:g.47284570)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	14	10	14
P-0026821-T05-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15291419	15292500	Intron of NOTCH3(-):72bp after exon 19	Exon 17 of NOTCH3(-)	GRCh37	INVERSION	NOTCH3 (NM_000435) Rearrangement: c.3142+73_c.2679inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	1081	NA	0	6	0	6
P-0027183-T02-IM6	SOMATIC	TACC3	FGFR3	4	4	1740793	1808673	Intron of TACC3(+):635bp before exon 11	Intron of FGFR3(+):12bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion (FGFR1 exons 1-17 fused with TACC3 exons 11-16 ) : c.2274+12:FGFR3_c.1942-636:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67880	NA	0	78	10	107
P-0028265-T02-IM6	SOMATIC	SMARCA4	LOC646813	19	11	11170231	50372233	Intron of SMARCA4(+):197bp before exon 33	5-UTR of LOC646813(+):8Kb before coding start	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(11;19)(p11.12;p13.2)(chr11:g.50372233::chr19:g.11170231)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {LOC646813:SMARCA4}	0	NA	0	6	10	6
P-0029640-T01-IM6	SOMATIC	TFE3	CCDC120	X	X	48895643	48923791	Intron of TFE3(-):4bp before exon 5	Intron of CCDC120(+):415bp after exon 9	GRCh37	DUPLICATION	TFE3 (NM_006521) rearrangement: c.781-4_chrX:g/48923791dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	28148	NA	0	15	10	18
P-0029657-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49434883	49438677	Exon 31 of KMT2D(-)	Exon 19 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4813_c.6670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3794	NA	0	5	10	5
P-0029936-T01-IM6	SOMATIC	NF1	ACSF2	17	17	29557280	48543946	Exon 23 of NF1(+)	Intron of ACSF2(+):2Kb after exon 11	GRCh37	DUPLICATION	ACSF2 (NM_025149) - NF1 (NM_001042492) rearrangement: c.1215+229:ACSF2_c.2993:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ACSF2:NF1}	18986666	NA	0	9	5	9
P-0030013-T01-IM6	SOMATIC	STK11	UGT8	19	4	1206948	115304519	Exon 1 of STK11(+)	IGR: 215Kb before UGT8(+)	GRCh37	TRANSLOCATION	STK11 (NM_000455) Rearrangement : t(4,19)(q26; p13.3)(chr4:g.115304519::chr19:g.1206948)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	10	31
P-0030054-T01-IM6	SOMATIC	KIAA0101	IDH2	15	15	64675823	90628599	3-UTR of KIAA0101(-):4Kb after coding stop	Exon 8 of IDH2(-)	GRCh37	INVERSION	IDH2 (NM_002168) Rearrangement : c.988:IDH2_c.-2253:KIAA0101inv	PRECISE		MANUAL_OK	3to3	-	25952776	NA	0	22	10	23
P-0030169-T01-IM6	SOMATIC	PTPRS	DAD1	19	14	5219993	22757521	Exon 22 of PTPRS(-)	IGR: 276Kb before DAD1(-)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) Rearrangement : t(14;19)(q11.2; p13.3)(chr14:g.22757521::chr19:g.5219993)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	54	10	54
P-0030396-T02-IM6	SOMATIC	RET	DOCK1	10	10	43608320	128908913	Exon 9 of RET(+)	Intron of DOCK1(+):295bp after exon 25	GRCh37	DUPLICATION	DOCK1 (NM_001380) - RET (NM_020975) Rearrangement: c.2515+295:RET_c.1668:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DOCK1:RET}	85300593	NA	0	110	10	114
P-0030396-T02-IM6	SOMATIC	RET	RBPMS	10	8	43610018	30412656	Exon 11 of RET(+)	Intron of RBPMS(+):4Kb before exon 7	GRCh37	TRANSLOCATION	RBPMS (NM_001008712) - RET (NM_020975) Rearrangement : t(8,10)(p21.1,q11.21)(chr8:g.30412656::chr10:g.43610018)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RBPMS:RET}	0	NA	0	74	10	73
P-0030465-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39823191	42872882	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2766:TMPRSS2_c.19-5647:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3049691	NA	0	17	10	17
P-0030480-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68846094	68847287	Exon 8 of CDH1(+)	Exon 9 of CDH1(+)	GRCh37	DUPLICATION	CDH1 (NM_004360) Rearrangement: c.1065_c.1209dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1193	NA	0	44	10	45
P-0030521-T01-IM6	SOMATIC	CNTLN	FANCC	9	9	17473117	97897880	Intron of CNTLN(+):6Kb after exon 23	Intron of FANCC(-):96bp before exon 8	GRCh37	INVERSION	CNTLN (NM_017738) - FANCC (NM_000136) rearrangement: c.3855+6228:CNTLN_c.687-96:FANCCinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CNTLN:FANCC}	80424763	NA	0	25	10	23
P-0030552-T01-IM6	SOMATIC	TMPRSS2	ABCG1	21	21	42873081	43719730	Intron of TMPRSS2(-):3Kb before exon 2	Promoter of ABCG1(+):80Kb from tx start	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2965:TMRPSS2_chr21:g.43719730inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {ABCG1:TMPRSS2}	846649	NA	0	11	10	11
P-0030893-T01-IM6	SOMATIC	BRCA1	CACNA2D4	17	12	41244044	1952789	Exon 10 of BRCA1(-)	Intron of CACNA2D4(-):778bp after exon 25	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) Rearrangement : t(12,17)(p13.32,q21.31)(chr12:g.1952789::chr17:g.41244044)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	44	10	57
P-0030984-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875009	42874857	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4741:TMPRSS2_c.40-57465:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999848	NA	0	35	10	37
P-0031219-T01-IM6	SOMATIC	RAD52	RAD52	12	12	1040440	1055374	Exon 3 of RAD52(-)	5-UTR of RAD52(-):33Kb before coding start	GRCh37	DELETION	RAD52 (NM_134424) rearrangement: c.132:RAD52_chr12:g.1055374del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14934	NA	0	15	10	18
P-0031269-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39831034	42870853	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):737bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.56-737:TMPRSS2_ c.19-13490:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3039819	NA	0	47	10	49
P-0032063-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55177465	55223182	Intron of EGFR(+):33Kb before exon 2	Intron of EGFR(+):340bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-32514_c.890-341del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	45717	NA	0	174	10	179
P-0032065-T01-IM6	SOMATIC	NBPF20	HIST3H3	1	1	145082149	228612866	Intron of NBPF20(+):231Kb before exon 54	Exon 1 of HIST3H3(-)	GRCh37	DUPLICATION	HIST3H3 (NM_003493) rearrangement: c.161:HIST3H3_chr1:g.145082149dup	IMPPRECISE		MANUAL_OK	5to3	-	83530717	NA	0	5	0	5
P-0032066-T01-IM6	SOMATIC	RPTOR	RPLP0P2	17	11	78765364	61390991	Intron of RPTOR(+):55bp after exon 7	5-UTR of RPLP0P2(+):16Kb before coding start	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(11;17)(q12.2;q25.3)(chr11:g.61390991::chr17:g.78765364)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	39	10	50
P-0032067-T01-IM6	SOMATIC	NPM1	NPM1	5	5	170817910	170827217	Intron of NPM1(+):398bp before exon 3	Intron of NPM1(+):3bp after exon 7	GRCh37	DELETION	NPM1 (NM_002520) rearrangement: c.139-399_c.582+3del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	9307	NA	0	4	10	4
P-0032069-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487712	57493098	Intron of NAB2(+):331bp after exon 6	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 16-22): c.1468+331:NAB2_c.1870:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5386	NA	0	47	10	46
P-0032074-T01-IM6	SOMATIC	NOTCH1	LINC01573	9	9	139438609	139454508	Intron of NOTCH1(-):55bp before exon 2	IGR: 12Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) Rearrangement: c.62-55:NOTCH1_chr9:g.139454508del	PRECISE		MANUAL_OK	3to5	-	15899	NA	0	8	7	8
P-0032076-T01-IM6	SOMATIC	LOC101929681	DROSHA	5	5	29759534	31431595	IGR: 379Kb before LOC101929681(-)	Intron of DROSHA(-):87bp after exon 25	GRCh37	INVERSION	DROSHA (NM_013235) Rearrangement: c.3145+88:DROSHA_chr5:g.29759534inv	PRECISE		MANUAL_OK	5to5	-	1672061	NA	0	11	10	11
P-0032111-T01-IM6	SOMATIC	RIN1	RPS6KB2	11	11	66096453	67202046	IGR: 3Kb before RIN1(-)	Intron of RPS6KB2(+):6bp before exon 14	GRCh37	INVERSION	RPS6KB2 (NM_003952) Rearrangement: c.1156-7:RPS6KB2_chr11:g.66096453inv	PRECISE		MANUAL_OK	5to5	-	1105593	NA	0	355	10	696
P-0032111-T01-IM6	SOMATIC	REL	REL	2	2	61122513	61149056	Intron of REL(+):833bp after exon 3	Exon 11 of REL(+)	GRCh37	DELETION	REL (NM_002908) Rearrangement: c.302+833_c.1246del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	26543	NA	0	46	10	53
P-0032131-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38146860	38153393	Intron of WHSC1L1(-):50bp after exon 18	Exon 16 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2836_c.3231+51inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6533	NA	0	2	10	2
P-0032138-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10597327	10600532	Exon 6 of KEAP1(-)	Intron of KEAP1(-):3bp before exon 4	GRCh37	INVERSION	KEAP1 (NM_203500) rearrangement: c.1326-3_c.*1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3205	NA	0	24	10	41
P-0032153-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187509113	187509904	3-UTR of FAT1(-):632bp after coding stop	Exon 27 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.13609:FAT1_chr4:g.187509113inv	PRECISE		MANUAL_OK	3to3	-	791	NA	0	18	10	18
P-0032156-T01-IM6	SOMATIC	BRCA1	NFATC2IP	17	16	41197718	28960444	Exon 23 of BRCA1(-)	Promoter of NFATC2IP(+):2Kb from tx start	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(16;17)(p11.2;q21.32)(chr16:g.28960444::chr17:g.41197718)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	21	10	26
P-0032170-T01-IM6	SOMATIC	RB1	RB1	13	13	48876391	48881417	Promoter of RB1(+):1Kb from tx start	Exon 2 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.139:RB1_chr13:g.48876391del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5026	NA	0	4	10	6
P-0032170-T01-IM6	SOMATIC	ALK	EML4	2	2	29447695	42524478	Intron of ALK(-):631bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1822:EML4_c.3172+632:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076783	NA	0	56	10	54
P-0032174-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11838074	12030278	Intron of ETV6(+):35Kb after exon 1	Intron of ETV6(+):7Kb before exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.33+34980_c.1010-7101del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	192204	NA	0	18	10	18
P-0032208-T01-IM6	SOMATIC	MYO18B	FGFR2	22	10	26280218	123241929	Intron of MYO18B(+):6Kb after exon 25	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - MYO18B (NM_032608) rearrangement: t(10;22)(q26.13;q12.2)(chr10:g.123241929::chr22:g.26280218)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:MYO18B}	0	NA	0	5	10	6
P-0032215-T01-IM6	SOMATIC	BIRC3	BIRC3	11	11	102196155	102197634	Intron of BIRC3(+):41bp before exon 4	Intron of BIRC3(+):1Kb before exon 5	GRCh37	INVERSION	BIRC3 (NM_182962) rearrangement: c.854-42_c.954-1149inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1479	NA	0	12	10	12
P-0032225-T01-IM6	SOMATIC	GNAQ	DLGAP3	9	1	80430715	35382168	Intron of GNAQ(-):29bp before exon 3	5-UTR of DLGAP3(-):50Kb before coding start	GRCh37	TRANSLOCATION	GNAQ (NM_002072) rearrangement: t(1;9)(p34.3;q21.2)(chr1:g.35382168::chr9:g.80430715)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DLGAP3:GNAQ}	0	NA	0	23	10	32
P-0032229-T01-IM6	SOMATIC	GJA1	ARID1B	6	6	121762939	157496213	5-UTR of GJA1(+):5Kb before coding start	Intron of ARID1B(+):962bp after exon 11	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.3135+962:ARID1B_chr6:g.121762939inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	35733274	NA	0	7	0	7
P-0032236-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57865012	57868995	Exon 12 of GLI1(+)	Promoter of GLI1(+):15Kb from tx start	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.2489_c.*3151inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3983	NA	0	9	10	9
P-0032236-T01-IM6	SOMATIC	BBC3	PDDC1	19	11	47726940	775251	Intron of BBC3(-):2Kb before exon 4	Intron of PDDC1(-):109bp before exon 2	GRCh37	TRANSLOCATION	BBC3 (NM_001127240) rearrangement: t(11;19)(p15.5;q13.32)(chr11:g.775251::chr19:g.47726940)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	23	10	23
P-0032236-T01-IM6	SOMATIC	DOT1L	SIGLEC11	19	19	2210848	50445252	Exon 14 of DOT1L(+)	IGR: 7Kb before SIGLEC11(-)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.1345:DOT1L_chr19:g.50445252del	PRECISE		MANUAL_OK	3to5	-	48234404	NA	0	24	10	24
P-0032236-T01-IM6	SOMATIC	KMT2B	ZNF132	19	19	36224838	58940265	Intron of KMT2B(+):65bp after exon 30	IGR: 4Kb before ZNF132(-)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.7159+65:KMT2B_chr19:g.58940265del	PRECISE		MANUAL_OK	3to5	-	22715427	NA	0	73	10	80
P-0032236-T01-IM6	SOMATIC	INHA	STK11IP	2	2	220439916	220457955	Exon 2 of INHA(+)	IGR: 5Kb before STK11IP(+)	GRCh37	DUPLICATION	INHA (NM_002191) rearrangement: c.769:INHA_chr2:g.220457955dup	PRECISE		MANUAL_OK	5to3	-	18039	NA	0	65	10	66
P-0032237-T01-IM6	SOMATIC	STAT5B	STAT3	17	17	40370514	40474419	Intron of STAT5B(-):166bp before exon 9	Exon 21 of STAT3(-)	GRCh37	INVERSION	STAT5B (NM_012448) - STAT3 (NM_139276) rearrangement: c.990-166:STAT5B_c.1982:STAT3inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	103905	NA	0	6	0	7
P-0032311-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67353055	67457104	IGR: 5Kb before SMAD3(+)	Intron of SMAD3(+):128bp before exon 2	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.207-129:SMAD3_chr15:g.67353055del	IMPPRECISE		MANUAL_OK	3to5	-	104049	NA	0	7	0	7
P-0032376-T01-IM6	SOMATIC	NF1	NF1	17	17	29562716	29631804	Exon 28 of NF1(+)	Intron of NF1(+):21Kb before exon 37	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement: c.3796_c.4836-21034dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	69088	NA	0	6	10	6
P-0032394-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097534	178114409	Intron of NFE2L2(-):223bp before exon 4	Intron of NFE2L2(-):15Kb after exon 1	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.45+14851_c.403-223del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	16875	NA	0	3	5	3
P-0032407-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311546	43611730	Intron of KIF5B(-):229bp after exon 16	Intron of RET(+):301bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1914+230:KIF5B_c.2137-302:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11300184	NA	0	30	10	41
P-0032427-T01-IM6	SOMATIC	RPRD2	MCL1	1	1	150373570	150551493	Intron of RPRD2(+):17Kb before exon 2	Exon 1 of MCL1(-)	GRCh37	INVERSION	RPRD2 (NM_015203) - MCL1 (NM_021960) rearrangement: c.206-16502:RPRD2_c.514:MCL1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RPRD2:MCL1}	177923	NA	0	66	10	78
P-0032427-T01-IM6	SOMATIC	ANKS1B	PTPN11	12	12	99747283	112926289	Intron of ANKS1B(-):46Kb after exon 12	Exon 12 of PTPN11(+)	GRCh37	INVERSION	PTPN11 (NM_002834) - ANKS1B (NM_152788) rearrangement: c.1422:PTPN11_c.1756+46126:ANKS1Binv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PTPN11:ANKS1B}	13179006	NA	0	5	0	5
P-0032432-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739191	1808674	Intron of TACC3(+):133bp before exon 10	Intron of FGFR3(+):13bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+13:FGFR3_c.1837-134:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69483	NA	0	95	10	102
P-0032432-T01-IM6	SOMATIC	TERT	FAM173B	5	5	1295166	10249995	Promoter of TERT(-):42Kb from tx start	3-UTR of FAM173B(-):26bp after coding stop	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-62_chr5:g.10249995del	PRECISE		MANUAL_OK	3to5	-	8954829	NA	0	6	10	7
P-0032442-T01-IM6	SOMATIC	CDK8	EXOSC8	13	13	26970464	37582815	Exon 8 of CDK8(+)	Intron of EXOSC8(+):50bp before exon 10	GRCh37	DELETION	CDK8 (NM_001260) - EXOSC8 (NM_181503) rearrangement: c.833:CDK8_c.609-51:EXOSC8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDK8:EXOSC8}	10612351	NA	0	6	7	6
P-0032445-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974757	21981860	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):11Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.70:CDKN2A_chr9:g.21981860del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7103	NA	0	18	10	18
P-0032457-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38269126	38272186	3-UTR of FGFR1(-):2Kb after coding stop	Intron of FGFR1(-):39bp before exon 16	GRCh37	INVERSION	FGFR1 (NM_001174067) Rearrangement: c.2071-39_c.*2020inv	PRECISE		MANUAL_OK	3to3	-	3060	NA	0	22	10	22
P-0032461-T01-IM6	SOMATIC	LOC440040	KMT2A	11	11	49684209	118343154	5-UTR of LOC440040(+):148Kb before coding start	Exon 3 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) Rearrangement: c.1280:KMT2A_chr11:g.49684209inv	PRECISE		MANUAL_OK	5to5	-	68658945	NA	0	23	10	30
P-0032461-T01-IM6	SOMATIC	FGF3	PGR	11	11	69640933	100998222	IGR: 16Kb before FGF3(-)	Exon 1 of PGR(-)	GRCh37	INVERSION	PGR(NM_000926) Rearrangement:  c.1580:PGR_chr11:g.69640933inv	PRECISE		MANUAL_OK	3to3	-	31357289	NA	1	64	10	63
P-0032461-T01-IM6	SOMATIC	ARRB1	PAK1	11	11	75040683	77036216	Intron of ARRB1(-):22Kb after exon 1	Intron of PAK1(-):2Kb before exon 15	GRCh37	DELETION	PAK1(NM_002576) - ARRB1(NM_004041) Rearrangement: c.1552-1811:PAK1_c.20+21949:ARRB1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PAK1:ARRB1}	1995533	NA	0	17	10	17
P-0032461-T01-IM6	SOMATIC	MRE11A	ATM	11	11	94213660	108217855	Intron of MRE11A(-):733bp before exon 5	Intron of ATM(+):150bp before exon 59	GRCh37	INVERSION	MRE11A (NM_005591) - ATM(NM_000051) Rearrangement: c.315-733:MRE11A_c.8585-151:ATMinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MRE11A:ATM}	14004195	NA	0	12	10	12
P-0032467-T01-IM6	SOMATIC	NATD1	HOXB13	17	17	21146664	46804309	Exon 3 of NATD1(-)	Exon 2 of HOXB13(-)	GRCh37	INVERSION	HOXB3(NM_006361) Rearrangement: c.698:HOXB13_chr17:g.21146664inv	IMPPRECISE		MANUAL_OK	3to3	-	25657645	NA	0	9	0	9
P-0032478-T01-IM6	SOMATIC	TMPRSS2	RSU1P2	21	10	42861302	45577774	Intron of TMPRSS2(-):131bp after exon 4	IGR: 17Kb before RSU1P2(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement : t(10;21)(q11.21;q22.2)(chr10:g.45577774::chr21:g.42861302)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	15
P-0032482-T01-IM6	SOMATIC	UPF1	CEP89	19	19	18968053	33385263	Intron of UPF1(+):75bp before exon 15	Intron of CEP89(-):5Kb after exon 16	GRCh37	INVERSION	CEP89 (NM_032816) - UPF1(NM_002911) Rearrangement : c.1875+5500:CEP89_c.1969-76:UPF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CEP89:UPF1}	14417210	NA	0	74	10	83
P-0032500-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43772881	43778152	Intron of TP53BP1(-):211bp after exon 5	Intron of TP53BP1(-):5Kb before exon 5	GRCh37	DUPLICATION	TP53BP1 (NM_001141980) Rearrangement : c.141-38_c.499+212del	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	5271	NA	0	11	10	13
P-0032500-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25986088	26068200	Intron of ASXL2(-):4Kb before exon 8	Intron of ASXL2(-):149bp after exon 2	GRCh37	DELETION	ASXL2 (<Transcript_ID>) rearrangement: <mutalizer_gene2_cdna>_<mutalizer_gene1_cdna>del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	82112	NA	0	19	10	19
P-0032507-T01-IM6	SOMATIC	SORBS1	FGFR2	10	10	97250518	123242268	5-UTR of SORBS1(-):176Kb before coding start	Intron of FGFR2(-):943bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) Rearrangement : c.2301+944:FGFR2_chr10:g.97250518del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FGFR2:SORBS1}	25991750	NA	0	10	10	10
P-0032508-T01-IM6	SOMATIC	DNAJB4	RFWD2	1	1	78478736	176085759	Exon 2 of DNAJB4(+)	Exon 9 of RFWD2(-)	GRCh37	INVERSION	RFWD2 (NM_022457) - DNAJB4 (NM_007034) Rearrangement : c.1026+1:RFWD2_c.213:DNAJB4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RFWD2:DNAJB4}	97607023	NA	0	27	10	27
P-0032513-T01-IM6	SOMATIC	STK11	STK11	19	19	1207034	1209544	Exon 1 of STK11(+)	Intron of STK11(+):2Kb after exon 1	GRCh37	DELETION	STK11 (NM_000455) Rearrangement : c.122_c.290+2342del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2510	NA	0	16	10	21
P-0032518-T01-IM6	SOMATIC	ALK	EML4	2	2	29448359	42525263	Exon 19 of ALK(-)	Intron of EML4(+):3Kb after exon 12	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion: c.1315+2607:EML4_c.3140:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13076904	NA	0	68	10	68
P-0032533-T01-IM6	SOMATIC	ATP1B2	TP53	17	17	7559666	7577365	3-UTR of ATP1B2(+):5Kb after coding stop	Intron of TP53(-):133bp after exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.782+134:TP53_chr17:g.7559666del	PRECISE		MANUAL_OK	3to5	-	17699	NA	0	4	5	4
P-0032533-T01-IM6	SOMATIC	VPREB1	ATR	22	3	22563794	142217747	IGR: 35Kb before VPREB1(+)	Intron of ATR(-):131bp before exon 32	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;22)(q23;q11.22)(chr3:g.142217747::chr22:g.22563794)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	64	10	60
P-0032537-T03-IM6	SOMATIC	KMT2D	C12orf76	12	12	49425440	110500982	Exon 39 of KMT2D(-)	Intron of C12orf76(-):3Kb after exon 2	GRCh37	DELETION	C12orf76 (NM_207435) - KMT2D (NM_003482): c.15+2683:C13orf76_c.13048:KMT2Ddel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {C12orf76:KMT2D}	61075542	NA	0	7	10	9
P-0032550-T01-IM6	SOMATIC	MPL	MPL	1	1	43805824	43822389	Intron of MPL(+):27bp after exon 5	Promoter of MPL(+):19Kb from tx start	GRCh37	DELETION	MPL (NM_005373) rearrangement: c.853+27:MPL_chr1:g.43822389del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	16565	NA	0	57	10	183
P-0032550-T01-IM6	SOMATIC	NKX3-1	MYC	8	8	23538831	128748785	Exon 2 of NKX3-1(-)	5-UTR of MYC(+):54bp before coding start	GRCh37	DELETION	NKX3-1 (NM_006167) - MYC (NM_002467) rearrangement: c.383:NKX3-1_c.-55:MYCdel	PRECISE		MANUAL_OK	3to5	-	105209954	NA	0	17	10	63
P-0032552-T01-IM6	SOMATIC	INPP4B	FREM3	4	4	143129529	144555409	Intron of INPP4B(-):48bp after exon 14	Intron of FREM3(-):6Kb before exon 3	GRCh37	DUPLICATION	FREM3 (NM_001168235) - INPP4B (NM_001101669) rearrangement: c.1072+49:INPP4B_c.5276-6496:FREM3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {INPP4B:FREM3}	1425880	NA	0	63	10	64
P-0032571-T01-IM6	SOMATIC	MED12	MED12	X	X	70340002	70343489	Exon 4 of MED12(+)	Exon 12 of MED12(+)	GRCh37	DUPLICATION	MED12 (NM_005120) Rearrangement : c.535_c.1663dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3487	NA	0	45	10	45
P-0032620-T01-IM6	SOMATIC	CSNK1G2	DOT1L	19	19	1981791	2222077	Promoter of CSNK1G2(+):41Kb from tx start	Exon 24 of DOT1L(+)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement:c.2909:DOT1L_chr19:g.1981791del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CSNK1G2:DOT1L}	240286	NA	0	41	10	42
P-0032682-T01-IM6	SOMATIC	PGR	DMRT2	11	9	100999195	1442340	Exon 1 of PGR(-)	IGR: 392Kb before DMRT2(+)	GRCh37	TRANSLOCATION	PGR (NM_000926) rearrangement: t(9;11)(p24.3;q22.1)(chr9:g.1442340::chr11:g.100999195)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	81	10	81
P-0032683-T01-IM6	SOMATIC	ALK	EML4	2	2	29447763	42526259	Intron of ALK(-):563bp after exon 19	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2122:EML4_c.3172+564:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078496	NA	0	11	10	11
P-0032686-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315057	43611982	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):49bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2299:KIF5B_c.2137-50:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296925	NA	0	100	10	108
P-0032686-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8633201	8722538	Intron of PTPRD(-):115bp after exon 14	Intron of PTPRD(-):11Kb after exon 12	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.64+11242_c.352+116dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	89337	NA	0	16	0	16
P-0032778-T01-IM6	SOMATIC	POLD1	KLK10	19	19	50919757	51521476	Exon 23 of POLD1(+)	Intron of KLK10(-):822bp after exon 2	GRCh37	INVERSION	KLK10 (NM_001077500) - POLD1 (NM_002691) Rearrangement :  c.88+823:KLK10_c.2925:POLD1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KLK10:POLD1}	601719	NA	0	6	10	6
P-0013036-T02-IM6	SOMATIC	DROSHA	CTD-2151A2.1	5	5	31424689	99229843	Intron of DROSHA(-):111bp before exon 27	IGR: 360Kb before CTD-2151A2.1(+)	GRCh37	INVERSION	DROSHA (NM_013235) Rearrangement: c.3217-111:DROSHA_chr5:g.99229843inv	PRECISE		MANUAL_OK	3to3	-	67805154	NA	0	39	10	39
P-0031857-T01-IM6	SOMATIC	BRCA2	LINC00457	13	13	32913292	35121447	Exon 11 of BRCA2(+)	3-UTR of LINC00457(-):93Kb after coding stop	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement: c.4800:BRCA2_chr13:g.35121447del	PRECISE		MANUAL_OK	3to5	-	2208155	NA	0	4	10	5
P-0032075-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883808	37886469	Intron of ERBB2(+):8bp after exon 26	Promoter of ERBB2(+):30Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) Rearrangement: c.3412+8_c.*2172del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2661	NA	0	99	10	130
P-0032300-T01-IM6	SOMATIC	CHRNB1	TP53	17	17	7356617	7576880	Intron of CHRNB1(+):998bp before exon 8	Exon 9 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.966:TP53_chr17:g.7356617del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	220263	NA	0	16	10	18
P-0032702-T01-IM6	SOMATIC	CPD	NF1	17	17	28678685	29552280	IGR: 27Kb before CPD(+)	Intron of NF1(+):12bp after exon 17	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.2001+12:NF1_chr17:g.28678685inv	PRECISE		MANUAL_OK	3to3	-	873595	NA	0	12	10	12
P-0032702-T01-IM6	SOMATIC	APC	APC	5	5	112173005	112174729	Intron of APC(+):244bp before exon 16	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1959-245_c.3438del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1724	NA	0	3	6	3
P-0032702-T01-IM6	SOMATIC	SPANXA2-OT1	TEK	X	9	140560188	27217610	IGR: 31Kb before SPANXA2-OT1(+)	Intron of TEK(+):75bp before exon 19	GRCh37	TRANSLOCATION	TEK (NM_000459) rearrangement: t(9;X)(p21.2;q27.2)(chr9:g.27217610::chrX:g.140560188)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0009006-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867873	42874596	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4480:TMPRSS2_chr21:g.39867873del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006723	NA	0	75	10	79
P-0013756-T03-IM6	SOMATIC	INA	FGFR2	10	10	105043292	123242695	Intron of INA(+):3Kb before exon 2	Intron of FGFR2(-):516bp after exon 17	GRCh37	INVERSION	INA (NM_032727) - FGFR2 (NM_000141) rearrangement: c.1066-3500:INA_c.2301+517:FGFR2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {INA:FGFR2}	18199403	NA	0	67	10	67
P-0022474-T02-IM6	SOMATIC	AKIRIN2	ARID1B	6	6	88437981	157405764	IGR: 53Kb before AKIRIN2(-)	Intron of ARID1B(+):31bp before exon 6	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: chr6:g.88437981_c.1864-32:ARID1Bdel	PRECISE		MANUAL_OK	3to5	-	68967783	NA	0	16	10	17
P-0023479-T01-IM6	SOMATIC	PARD3-AS1	ACVR1	10	2	35105336	158595104	5-UTR of PARD3-AS1(+):14bp before coding start	Intron of ACVR1(-):22bp before exon 10	GRCh37	TRANSLOCATION	ACVR1 (NM_001111067) rearrangement: t(2;10)(q24.1;p11.21)(chr2:g.158595104::chr10:g.35105336)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PARD3-AS1:ACVR1}	0	NA	0	21	10	21
P-0023479-T01-IM6	SOMATIC	ERBB3	SPTBN1	12	2	56495523	54779988	Exon 28 of ERBB3(+)	Intron of SPTBN1(+):26Kb after exon 2	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) - SPTBN1 (NM_003128) rearrangement: t(2;12)(p16.2;q13.2)(chr2:g.54779988::chr12:g.56495523)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	10	14
P-0032801-T01-IM6	SOMATIC	PTEN	STAMBPL1	10	10	89685138	90636313	Intron of PTEN(+):131bp before exon 3	IGR: 4Kb before STAMBPL1(+)	GRCh37	INVERSION	PTEN (NM_000314) Rearrangement: c.165-132:PTEN_chr10:g.90636313inv	PRECISE		MANUAL_OK	5to5	-	951175	NA	0	9	10	9
P-0032801-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39829912	42870711	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):595bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-595:TMPRSS2_c.19-12368:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040799	NA	0	67	10	73
P-0032802-T01-IM6	SOMATIC	MAP2K2	CHAF1A	19	19	4117593	4418675	Exon 2 of MAP2K2(-)	Intron of CHAF1A(+):602bp after exon 4	GRCh37	INVERSION	CHAF1A (NM_005483) - MAP2K2 (NM_030662) fusion (CHAF1A exons 1-4 fused to MAP2K2 exons 2-11): c.1017+602:CHAF1A_c.127:MAP2K2 inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CHAF1A:MAP2K2}	301082	NA	0	14	10	38
P-0009076-T04-IM6	SOMATIC	UNC13B	NOTCH1	9	9	35292090	139399815	Intron of UNC13B(+):4Kb before exon 8	Exon 25 of NOTCH1(-)	GRCh37	INVERSION	UNC13B (NM_006377) - NOTCH1 (NM_017617) rearrangement: c.527-3603:UNC13B_c.4533:NOTCH1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {UNC13B:NOTCH1}	104107725	NA	0	14	10	14
P-0009076-T04-IM6	SOMATIC	C9orf135	PTCH1	9	9	72493392	98220389	Intron of C9orf135(+):8Kb before exon 5	Exon 18 of PTCH1(-)	GRCh37	INVERSION	PTCH1 (NM_000264) - C9orf135 (NM_001010940) rearrangement: c.3074:PITCH1_c.450-8362:C9orf135inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTCH1:C9orf135}	25726997	NA	0	29	10	29
P-0019402-T02-IM6	SOMATIC	BCOR	CHD9	X	16	39933231	53216178	Exon 4 of BCOR(-)	Intron of CHD9(+):25Kb after exon 2	GRCh37	TRANSLOCATION	CHD9 (NM_025134) - BCOR (NM_001123385) rearrangement: t(X;16)(p11.4;q12.2)(chrX:g.39933231::chr16:g.53216178)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CHD9:BCOR}	0	NA	0	112	10	111
P-0024487-T01-IM6	SOMATIC	MIR4458	NSD1	5	5	8599249	176715992	IGR: 138Kb before MIR4458(+)	Intron of NSD1(+):66bp after exon 21	GRCh37	INVERSION	NSD1 (NM_022455) rearrangement: chr5:g.8599249_c.6258+66:NSD1inv	PRECISE		MANUAL_OK	3to3	-	168116743	NA	0	118	10	116
P-0024734-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8073679	8128639	Exon 4 of ERRFI1(-)	IGR: 57Kb before ERRFI1(-)	GRCh37	DUPLICATION	ERRFI1 (NM_018948) rearrangement: c.980_chr1:g.8128639dup	PRECISE		MANUAL_OK	5to3	-	54960	NA	0	25	10	40
P-0024734-T01-IM6	SOMATIC	TNPO2	RECQL4	19	8	12813003	145741584	Intron of TNPO2(-):42bp before exon 22	Exon 5 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(8;19)(q24.3;p13.2)(chr8:g.145741584::chr19:g.12813003)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	132	10	128
P-0024734-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202135260	202149923	Intron of CASP8(+):978bp before exon 3	Exon 8 of CASP8(+)	GRCh37	DUPLICATION	CASP8 (NM_001080125) rearrangement: c.483-979_c.1364dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	14663	NA	0	48	10	52
P-0029617-T03-IM6	SOMATIC	TRAIP	MST1R	3	3	49859022	49932838	IGR: 7Kb before TRAIP(-)	Intron of MST1R(-):32bp before exon 14	GRCh37	DUPLICATION	MST1R (NM_002447) rearrangement: chr3:g.49859022_c.3065-32dup	PRECISE		MANUAL_OK	5to3	-	73816	NA	0	25	10	26
P-0030928-T01-IM6	SOMATIC	FOXA1	GEMIN2	14	14	38060657	39604039	Exon 2 of FOXA1(-)	Intron of GEMIN2(+):1Kb after exon 8	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1332:FOXA1_chr14:g.39604039del	PRECISE		MANUAL_OK	3to5	-	1543382	NA	0	44	10	43
P-0030953-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30047642	30330661	Intron of PRKD1(-):76bp before exon 17	Intron of PRKD1(-):66Kb after exon 1	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.2435-76_c.264+65794del	PRECISE		MANUAL_OK	3to5	Deletion of 15 exons : out of frame	283019	NA	0	11	9	11
P-0032646-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39858526	42872447	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1 fused to ERG exons 2-10): c.56-2331:TMPRSS2_c.18+11761:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013921	NA	0	106	10	115
P-0032650-T01-IM6	SOMATIC	PEX5	ETV6	12	12	7329461	11905607	IGR: 12Kb before PEX5(+)	Intron of ETV6(+):94bp after exon 2	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: chr12:g.7329461_c.163+94inv	PRECISE		MANUAL_OK	3to3	-	4576146	NA	0	27	10	27
P-0032658-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151878081	151887848	Exon 36 of KMT2C(-)	Intron of KMT2C(-):3Kb before exon 32	GRCh37	DUPLICATION	KMT2C (NM_170606) Rearrangement: c.4661-2916_c.6864dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9767	NA	0	111	10	117
P-0032681-T01-IM6	SOMATIC	PIK3CD	NBPF20	1	1	9780968	144596166	Intron of PIK3CD(+):1bp after exon 13	Intron of NBPF20(+):229Kb before exon 53	GRCh37	DELETION	PIK3CD (NM_005026) - NBPF20 (NM_001278267) rearrangement: c.1689+1:PIK3CD_c.5307-228539:NBPF20del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PIK3CD:NBPF20}	134815198	NA	0	4	10	12
P-0032681-T01-IM6	SOMATIC	CDKN1B	TNFSF8	12	9	12871086	117720034	Exon 1 of CDKN1B(+)	IGR: 57Kb before TNFSF8(-)	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(9;12)(q33.1;p13.1)(chr9:g.117720034::chr12:g.12871086)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0032681-T01-IM6	SOMATIC	PGLS	PIK3R2	19	19	17631125	18271933	Intron of PGLS(+):627bp before exon 5	Exon 5 of PIK3R2(+)	GRCh37	DUPLICATION	PIK3R2 (NM_005027) - PGLS (NM_012088) rearrangement: c.536:PIK3R2_c.640-628:PGLSdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3R2:PGLS}	640808	NA	0	39	10	41
P-0032687-T01-IM6	SOMATIC	HNRNPM	BRD4	19	19	8553970	15364879	3-UTR of HNRNPM(+):44Kb after coding stop	Intron of BRD4(-):83bp after exon 11	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.2158+84:BRD4_chr19:g.8553970inv	IMPPRECISE		MANUAL_OK	5to5	-	6810909	NA	0	16	0	16
P-0032741-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8436674	8745583	Exon 35 of PTPRD(-)	5-UTR of PTPRD(-):428Kb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4004:PTPRD_chr9:g.8745583del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	308909	NA	0	8	10	8
P-0032896-T01-IM6	SOMATIC	TSC2	NBPF20	16	1	2136314	145721517	Exon 37 of TSC2(+)	Intron of NBPF20(+):357Kb after exon 99	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(1;16)(q21.1;p13.3)(chr1:g.145721517::chr16:g.2136314)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NBPF20:TSC2}	0	NA	0	17	10	17
P-0032965-T01-IM6	SOMATIC	CDK8	ESM1	13	5	26975603	54146908	Exon 12 of CDK8(+)	IGR: 127Kb before ESM1(-)	GRCh37	TRANSLOCATION	CDK8 (NM_001260) Rearrangement: t(5;13)(q11.2;q12.13)(chr5:g.54146908::chr13:g.26975603)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	55	10	57
P-0007065-T01-IM5	SOMATIC	PALB2	DCTN5	16	16	23646416	23663486	Exon 4 of PALB2(-)	Intron of DCTN5(+): 6Kb before exon 3	GRCh37	DELETION	PALB2 (NM_024675) rearrangement : c.1451:PALB2_c.118-6342:DCTN5del	PRECISE		MANUAL_OK	3to5	-	17070	NA	0	20	29	20
P-0007065-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56435989	56485483	Exon 9 of RNF43(-)	Intron of RNF43(-): 7Kb after exon 2	GRCh37	DELETION	RNF43 (NM_017763) rearrangement :  c.252+7204_c.1148del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	49494	NA	0	13	21	13
P-0032957-T01-IM6	SOMATIC	OR5B12	RPS6KB2	11	11	58202593	67199122	IGR: 4Kb before OR5B12(-)	Intron of RPS6KB2(+):136bp after exon 5	GRCh37	INVERSION	RPS6KB2 (NM_003952) Rearrangement: c.457+136:RPS6KB2_chr11:g.58202593inv	PRECISE		MANUAL_OK	3to3	-	8996529	NA	0	28	10	28
P-0032963-T01-IM6	SOMATIC	EED	EED	11	11	85948116	85961314	IGR: 8Kb before EED(+)	Intron of EED(+):23bp before exon 2	GRCh37	DELETION	EED (NM_003797) Rearrangement: chr11:g.85c.115-24:EEDddel	PRECISE		MANUAL_OK	3to5	-	13198	NA	0	24	10	25
P-0032993-T01-IM6	SOMATIC	GHR	ARID1A	5	1	42600647	27092885	Intron of GHR(+):28Kb before exon 2	Intron of ARID1A(+):28bp after exon 9	GRCh37	TRANSLOCATION	ARID1A (NM_006015) Rearrangement: t(1;5)(p35.3.3;p12)(chr1:g.27092885::chr5:g.42600647)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	10	33
P-0032993-T01-IM6	SOMATIC	ATRX	DLG2	X	11	76888956	83978235	Intron of ATRX(-):84bp before exon 19	Intron of DLG2(-):16Kb before exon 8	GRCh37	TRANSLOCATION	DLG2 (NM_001142699) -ATRX (NM_000489)  Rearrangement : t(X;11)(q13.3;p21.2)(chrX:g.76888956::chr11:g.83978235)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DLG2:ATRX}	0	NA	0	54	10	52
P-0033072-T01-IM6	SOMATIC	KMT2D	HMGA2	12	12	49437841	66252176	Intron of KMT2D(-):60bp before exon 22	Intron of HMGA2(+):20Kb after exon 3	GRCh37	INVERSION	HMGA2 (NM_003483)  - KMT2D (NM_003482) rearrangement: c.249+19827:HMGA2_c.5189-60:KMT2Dinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HMGA2:KMT2D}	16814335	NA	0	7	9	6
P-0033072-T01-IM6	SOMATIC	NAB2	SRGAP1	12	12	57487737	64368994	Intron of NAB2(+):356bp after exon 6	Intron of SRGAP1(+):9Kb before exon 2	GRCh37	INVERSION	NAB2 (NM_005967) - SRGAP1 (NM_020762) rearrangement: c.1468+356_c.68-8733:SRGAP1inv	PRECISE		MANUAL_OK	5to5	-	6881257	NA	0	6	7	6
P-0033078-T01-IM6	SOMATIC	RB1	RB1	13	13	49003859	49030213	Intron of RB1(+):23Kb before exon 18	Intron of RB1(+):126bp before exon 19	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1696-23270_c.1815-127del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	26354	NA	0	51	10	52
P-0033097-T01-IM6	SOMATIC	NKX2-1	PAX9	14	14	36988532	37145781	Exon 2 of NKX2-1(-)	3-UTR of PAX9(+):14Kb after coding stop	GRCh37	DUPLICATION	NKX2-1 (NM_001079668) rearrangement: c.121:NKX2-1_chr14:g.37145781dup	PRECISE		MANUAL_OK	5to3	-	157249	NA	0	8	10	9
P-0033126-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40082965	42874530	IGR: 28Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : c.56-4414:TMPRSS2_chr21:g.40082965del	IMPPRECISE		MANUAL_OK	3to5	-	2791565	NA	0	52	0	54
P-0018607-T03-IM6	SOMATIC	FAT1	FAT1	4	4	187539453	187550606	Exon 10 of FAT1(-)	Intron of FAT1(-):689bp before exon 8	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement: c.4324-689_c.8287del.	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11153	NA	0	74	10	80
P-0032951-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	40021734	42875759	3-UTR of ERG(-):12Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4118;TMPRSS2_c.-150+11848:ERGdel	PRECISE		MANUAL_OK	3to5	-	2854025	NA	0	97	10	98
P-0033136-T01-IM6	SOMATIC	SCOC	ARID1A	4	1	141107510	27058209	IGR: 71Kb before SCOC(+)	Intron of ARID1A(+):114bp after exon 3	GRCh37	TRANSLOCATION	ARID1A (NM_006015) Rearrangement: t(1,4)(p36.11; q31.1)(chr1:g.27058209::chr4:g.141107510)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	15
P-0033136-T01-IM6	SOMATIC	HAPLN1	RASA1	5	5	83002855	86676288	5-UTR of HAPLN1(-):66Kb before coding start	Intron of RASA1(+):37bp before exon 20	GRCh37	INVERSION	HAPLN1 (NM_001884) - RASA1 (NM_002890) Rearrangement : c.2604-38:HAPLN1_c.2604-38:RASA1inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {HAPLN1:RASA1}	3673433	NA	0	27	10	27
P-0016244-T02-IM6	SOMATIC	LOC101927869	BRD4	21	19	25706468	15350666	IGR: 30Kb before LOC101927869(-)	Intron of BRD4(-):34bp before exon 16	GRCh37	TRANSLOCATION	BRD4 (NM_058243) Rearrangement : t(19;21)(p13.12;q21.3)(chr19:g.15350666::chr21:g.25706468)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	72	10	70
P-0033226-T01-IM6	SOMATIC	TP53	SEPT9	17	17	7578324	75261748	Intron of TP53(-):35bp before exon 6	IGR: 16Kb before SEPT9(+)	GRCh37	INVERSION	TP53 (NM_000546) Rearrangement : chr17:g.75261748_c.560-35inv	PRECISE		MANUAL_OK	5to5	-	67683424	NA	0	26	10	29
P-0033226-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39865084	42871204	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exon2) : c.56-1088:TMPRSS2_c.40-47540:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006120	NA	0	44	10	47
P-0019772-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31379471	31381477	Exon 8 of DNMT3B(+)	Intron of DNMT3B(+):76bp after exon 10	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.878_c.1126+76del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2006	NA	0	19	10	20
P-0033178-T01-IM6	SOMATIC	MET	ST7	7	7	116339441	116693004	Exon 2 of MET(+)	Intron of ST7(+):47Kb before exon 2	GRCh37	DUPLICATION	ST7 (NM_021908) - MET (NM_000245) rearrangement: c.152-46812:ST7_c.303:METdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ST7:MET}	353563	NA	0	4	7	4
P-0033180-T01-IM6	SOMATIC	ALK	ALK	2	2	29443856	29446500	Intron of ALK(-):155bp before exon 23	Intron of ALK(-):106bp before exon 20	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3173-106_c.3516-155inv	PRECISE		MANUAL_OK	3to3	-	2644	NA	0	71	10	71
P-0033181-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3742462	3779672	Intron of TRAP1(-):3Kb before exon 2	Exon 31 of CREBBP(-)	GRCh37	DUPLICATION	TRAP1 (NM_016292) - CREBBP (NM_004380) rearrangement: c.89-1476:TRAP1_c.5376:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAP1:CREBBP}	37210	NA	0	25	10	27
P-0033193-T01-IM6	SOMATIC	DNMT1	ZNF8	19	19	10305530	58808368	Exon 1 of DNMT1(-)	Promoter of ZNF8(+):18Kb from tx start	GRCh37	INVERSION	DNMT1(NM_001379) Rearrangement:  c.46:DNMT1_chr19:g.58808368inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DNMT1:ZNF8}	48502838	NA	0	40	10	68
P-0033205-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46543204	46592321	Exon 3 of PIK3R3(-)	Intron of PIK3R3(-):5Kb after exon 1	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.106+5198_c.297del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	49117	NA	0	3	10	3
P-0021905-T02-IM6	SOMATIC	IRS2	IRS2	13	13	110436231	110468522	Exon 1 of IRS2(-)	IGR: 62Kb before IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.2170:IRS2_chr13:g.110468522del	PRECISE		MANUAL_OK	3to5	-	32291	NA	0	5	9	5
P-0021905-T02-IM6	SOMATIC	NPM1	FGF18	5	5	170827277	170852182	Intron of NPM1(+):63bp after exon 7	Intron of FGF18(+):5Kb after exon 2	GRCh37	DELETION	NPM1 (NM_002520) - FGF18 (NM_003862) rearrangement: c.582+63:NPM1_c.69+4735:FGF18del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {NPM1:FGF18}	24905	NA	0	21	10	23
P-0121446-T05-IM6	SOMATIC	ALK	ALK	2	2	29448689	29572365	Intron of ALK(-):258bp before exon 19	Intron of ALK(-):21Kb before exon 6	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.1283-21018_c.3068-258dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : in frame	123676	NA	0	92	10	105
P-0031523-T02-IM6	SOMATIC	INPPL1	CLPB	11	11	71940164	72024501	Exon 5 of INPPL1(+)	Intron of CLPB(-):4Kb after exon 9	GRCh37	DELETION	INPPL1 (NM_00156) rearrangement: c.549:INPPL1_chr11:g.72024501del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	84337	NA	0	19	10	18
P-0021511-T03-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14229680	14628294	Promoter of PRKACA(-):27Kb from tx start	Intron of DNAJB1(-):436bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-436:DNAJB1_c.-1321:PRKACAdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DNAJB1:PRKACA}	398614	NA	0	16	10	16
P-0023440-T02-IM6	SOMATIC	ETV6	ETV6	12	12	12035308	12037945	Intron of ETV6(+):2Kb before exon 6	Intron of ETV6(+):424bp after exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-2071_c.1152+424del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2637	NA	0	18	10	19
P-0023440-T02-IM6	SOMATIC	XPO1	XPO1	2	2	61702246	61705971	Promoter of XPO1(-):3Kb from tx start	Exon 25 of XPO1(-)	GRCh37	DUPLICATION	XPO1 (NM_003400) rearrangement: c.3200_c.*3709dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3725	NA	0	5	8	5
P-0023440-T02-IM6	SOMATIC	KREMEN1	EWSR1	22	22	29472408	29685329	Intron of KREMEN1(+):3Kb after exon 1	Intron of EWSR1(+):554bp after exon 9	GRCh37	DUPLICATION	EWSR1 (NM_013986) - KREMEN1 (NM_032045) rearrangement: c.992+554:EWSR1_c.97+3193:KREMEN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EWSR1:KREMEN1}	212921	NA	0	69	10	71
P-0023440-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397477	139400985	Intron of NOTCH1(-):156bp after exon 27	Exon 24 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.4008_c.5167+157del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3508	NA	0	338	10	1011
P-0023440-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139408106	139409436	Intron of NOTCH1(-):117bp before exon 14	Intron of NOTCH1(-):282bp before exon 13	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.2015-282_c.2208-117del	PRECISE		MANUAL_OK	3to3	-	1330	NA	0	22	10	21
P-0026573-T02-IM6	SOMATIC	TTC28	KMT2C	22	7	29066063	151845863	Intron of TTC28(-):10Kb after exon 1	Exon 52 of KMT2C(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(7;22)(q36.1;q12.1)(chr7:g.151845863::chr22:g.29066063)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	12	10	14
P-0029222-T02-IM6	SOMATIC	RET	RUFY1	10	5	43610037	179025890	Exon 11 of RET(+)	Intron of RUFY1(+):68bp after exon 14	GRCh37	TRANSLOCATION	RUFY1 (NM_025158) - RET (NM_020975) Rearrangement : t(5,10)(q35.3,q11.21)(chr5:g.179025890::chr10:g.43610037)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RUFY1:RET}	0	NA	0	109	10	114
P-0031753-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268412	55870420	Intron of EGFR(+):306bp after exon 24	Intron of SEPT14(-):3Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion (EGFR exons 1-24 fused to SEPT14 exon 10): c.2946+306:EGFR_c.1119+2531:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	602008	NA	0	803	10	1923
P-0033315-T01-IM6	SOMATIC	PIK3CB	KCNMB3	3	3	138426110	178983153	Exon 9 of PIK3CB(-)	Intron of KCNMB3(-):1Kb after exon 1	GRCh37	DELETION	KCNMB3 (NM_171828) - PIK3CB (NM_006219) rearrangement: c.62+1284:KCNMB3_c.1421:PIK3CBdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KCNMB3:PIK3CB}	40557043	NA	0	106	10	111
P-0033315-T01-IM6	SOMATIC	ROS1	TBC1D32	6	6	117642212	120602010	Intron of ROS1(-):209bp after exon 35	IGR: 799Kb before TBC1D32(-)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5777+210:ROS1_chr6:g.120602010del	PRECISE		MANUAL_OK	3to5	-	2959798	NA	0	27	10	28
P-0033399-T01-IM6	SOMATIC	PAXBP1	SPOP	21	17	34122819	47699480	Intron of PAXBP1(-):408bp after exon 10	Intron of SPOP(-):51bp before exon 3	GRCh37	TRANSLOCATION	PAXBP1 (NM_013329) - SPOP (NM_001007228) rearrangement: t(17;21)(q21.33;q22.11)(chr17:g.47699480::chr21:g.:34122819)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PAXBP1:SPOP}	0	NA	0	36	10	34
P-0033429-T01-IM6	SOMATIC	LINC01500	APC	14	5	59220602	112175465	IGR: 74Kb before LINC01500(+)	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) Rearrangement: t(5;14)(q22.2;q23.1)(chr5:g.112175465::chr14:g.59220602)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	17
P-0033465-T01-IM6	SOMATIC	ALOX12B	HES7	17	17	7980000	8029057	Exon 10 of ALOX12B(-)	Promoter of HES7(-):5Kb from tx start	GRCh37	DUPLICATION	ALOX12B (NM_001139) rearrangement: c.1337_chr17:g.8029057dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ALOX12B:HES7}	49057	NA	0	166	10	182
P-0033465-T01-IM6	SOMATIC	RYBP	DPT	3	1	72455938	168626981	Intron of RYBP(-):27Kb before exon 2	IGR: 38Kb before DPT(-)	GRCh37	TRANSLOCATION	RYBP (NM_012234) rearrangemnet: t(1;3)(q24.2;p13)(chr1:g.168626981::chr3:g.72455938)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	103	10	110
P-0033492-T01-IM6	SOMATIC	ARID5B	RTKN2	10	10	63852117	63926333	Exon 10 of ARID5B(+)	IGR: 27Kb before RTKN2(-)	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.2895:ARID5B_chr10:g.63926333dup	PRECISE		MANUAL_OK	5to3	-	74216	NA	0	4	10	4
P-0033492-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061907	38063921	Exon 2 of FOXA1(-)	Intron of FOXA1(-):184bp after exon 1	GRCh37	DUPLICATION	FOXA1 (NM_004496) rearrangement: c.72+185_c.82dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2014	NA	0	2	9	3
P-0033492-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15276243	15279315	Exon 31 of NOTCH3(-)	Intron of NOTCH3(-):1Kb before exon 29	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.5200-1093_c.5751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3072	NA	0	12	10	12
P-0033492-T01-IM6	SOMATIC	LOC101928569	PLK2	5	5	57364816	57753183	IGR: 39Kb before LOC101928569(-)	Exon 7 of PLK2(-)	GRCh37	DUPLICATION	PLK2 (NM_006622) rearrangement: c.833:PLK2_chr5:g.57364816dup	PRECISE		MANUAL_OK	5to3	-	388367	NA	0	10	10	10
P-0033496-T01-IM6	SOMATIC	PALB2	PALB2	16	16	23619288	23621327	Exon 12 of PALB2(-)	Intron of PALB2(-):2Kb before exon 12	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.3202-1994_c.3247del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2039	NA	0	8	10	10
P-0033508-T01-IM6	SOMATIC	IGSF3	NOTCH2	1	1	117198164	120529602	Intron of IGSF3(-):11Kb after exon 1	Exon 5 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) - IGSF3 (NM_001542) rearrangement: c.855:NOTCH2_c.43+10742:IGSF3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH2:IGSF3}	3331438	NA	0	59	10	66
P-0033514-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1730056	1808883	Exon 4 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 4-16): c.2315:FGFR3_c.927:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	78827	NA	0	24	10	24
P-0033514-T01-IM6	SOMATIC	ATR	ATR	3	3	142251647	142279383	Intron of ATR(-):2Kb after exon 21	Intron of ATR(-):87bp before exon 6	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.1350-87_c.3945+2275inv	PRECISE		MANUAL_OK	3to3	-	27736	NA	0	27	10	26
P-0033529-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212570118	212631913	Intron of ERBB4(-):2bp before exon 10	Intron of ERBB4(-):16Kb before exon 5	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.557-16484_c.1125-2del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	61795	NA	0	5	7	5
P-0012555-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39875095	42875302	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4576:TMPRSS2_c.40-57551:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000207	NA	0	38	10	39
P-0024123-T02-IM6	SOMATIC	PDCD1	LINC01237	2	2	242794953	242939794	Exon 2 of PDCD1(-)	5-UTR of LINC01237(+):81Kb before coding start	GRCh37	DUPLICATION	PDCD1 (NM_005018) rearrangement: c.256:PDCD1_chr2:g.242939794dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	144841	NA	0	3	7	3
P-0033669-T01-IM6	SOMATIC	NF2	NF2	22	22	30003844	30038144	Intron of NF2(+):4Kb after exon 1	Intron of NF2(+):46bp before exon 4	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.114+3743_c.364-47del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	34300	NA	0	74	10	78
P-0033691-T01-IM6	SOMATIC	MIR302F	ARID1A	18	1	26908520	27100964	IGR: 970Kb before MIR302F(+)	Exon 18 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;18)(p36.11;q12.1)(chr1:g.27100964::chr18:g.26908520)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	19	10	19
P-0033582-T01-IM6	SOMATIC	CPA6	PREX2	8	8	68464813	69020555	Intron of CPA6(-):35Kb before exon 3	Exon 24 of PREX2(+)	GRCh37	INVERSION	PREX2 (NM_024870) - CPA6 (NM_020361) Rearrangement : c.2927:PREX2_c.193-34531:CPA6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PREX2:CPA6}	555742	NA	0	56	10	70
P-0033575-T01-IM6	SOMATIC	GPS2	CNTROB	17	17	7217686	7856267	Exon 4 of GPS2(-)	IGR: 21Kb before CNTROB(+)	GRCh37	DELETION	GPS2 (NM_004489) Rearrangement : c.241:GPS2_chr17:g.7856267del	PRECISE		MANUAL_OK	3to5	-	638581	NA	0	15	10	57
P-0033575-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861873	42870354	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):238bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.56-238:TMPRSS2_c.18+8414:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008481	NA	0	67	10	70
P-0033749-T01-IM6	SOMATIC	LOC440390	FANCA	16	16	87145722	89813221	IGR: 54Kb before LOC440390(+)	Intron of FANCA(-):17bp after exon 34	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.3408+18:FANCA_chr16:g.87145722del	PRECISE		MANUAL_OK	3to5	-	2667499	NA	0	232	10	284
P-0033417-T02-IM6	SOMATIC	RET	MIR548BA	10	5	43600531	2070751	Exon 4 of RET(+)	IGR: 87Kb before MIR548BA(+)	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(5;10)(p15.33;q11.21)(chr5:g.2070751::chr10:g.43600531)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0033615-T01-IM6	SOMATIC	GNAS	CREM	20	10	57479028	35491448	Intron of GNAS(+):182bp after exon 5	Intron of CREM(+):1Kb after exon 2	GRCh37	TRANSLOCATION	GNAS (NM_000516) - CREM (NM_181571) rearrangement: t(10;20)(p11.21;q13.32)(chr10:g.35491448::chr20:g.57479028)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {GNAS:CREM}	0	NA	0	9	10	9
P-0033623-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29687617	32415265	Intron of EWSR1(+):29bp after exon 10	Intron of WT1(-):964bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415265::chr22:g.29687617)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	198	10	196
P-0033765-T01-IM6	SOMATIC	ERBB2	PLA2G4F	17	15	37881473	42441264	Intron of ERBB2(+):16bp after exon 21	Intron of PLA2G4F(-):646bp after exon 11	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) - PLA2G4F (NM_213600) rearrangement: t(15;17)(q15.1;q12)(chr15:g.42441264::chr17:g.37881473)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ERBB2:PLA2G4F}	0	NA	0	10	10	10
P-0033766-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99323114	99460035	Intron of IGF1R(+):72Kb after exon 2	Exon 10 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.640+71778_c.2131del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	136921	NA	0	22	10	22
P-0033766-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141542702	141545269	Exon 18 of AGO2(-)	Intron of AGO2(-):297bp after exon 17	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.2271+298_c.2284del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2567	NA	0	22	10	23
P-0033789-T01-IM6	SOMATIC	RECQL4	LINC01031	8	1	145739644	194264448	Exon 11 of RECQL4(-)	IGR: 991Kb before LINC01031(+)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(1;8)(q31.3;q24.3)(chr1:g.194264448::chr8:g.145739644)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	15
P-0014304-T02-IM6	SOMATIC	ROS1	EZR	6	6	117645949	159191717	Intron of ROS1(-):371bp before exon 34	Intron of EZR(-):78bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: (EZR exons 1 to 9 fused with ROS1 exons 34 to 43): c.1090+79:EZR_c.5558-371:ROS1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41545768	NA	0	28	0	28
P-0027721-T06-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21969989	21971000	Intron of CDKN2A(-):911bp after exon 2	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.358_c.457+912del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1011	NA	0	23	10	26
P-0032654-T01-IM6	SOMATIC	CARM1	TSHZ3	19	19	11027586	31888112	Intron of CARM1(+):133bp after exon 8	IGR: 122Kb before TSHZ3(-)	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: c.1020+133:CARM1_chr19:g.31888112del	PRECISE		MANUAL_OK	3to5	-	20860526	NA	0	4	10	4
P-0032731-T02-IM6	SOMATIC	GLI1	PPM1B	12	2	57859147	44262425	Intron of GLI1(+):109bp after exon 5	IGR: 134Kb before PPM1B(+)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) Rearrangement : t(2;12)(q34.2;q31.3)(chr2:g.44262425::chr12:g.57859147)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	35	10	36
P-0032731-T02-IM6	SOMATIC	BCL2L11	PCGEM1	2	2	111884266	193889470	Intron of BCL2L11(+):3Kb after exon 2	IGR: 275Kb before PCGEM1(+)	GRCh37	DELETION	BCL2L11 (NM_138621) Rearrangement : c.394+2550:BCL2L11chr2:g.193889470del	PRECISE		MANUAL_OK	3to5	-	82005204	NA	0	40	10	40
P-0014872-T03-IM6	SOMATIC	NTRK3	ETV6	15	12	88548029	12028946	Intron of NTRK3(-):28Kb after exon 14	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 with NTRK3 exons 15-20) : t(12;15)(p13.2;q25.3)(chr12:g.12028946::chr15:g.88548029)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	195	10	194
P-0033523-T01-IM6	SOMATIC	C11orf70	BIRC3	11	11	101928097	102196131	Intron of C11orf70(+):2Kb before exon 3	Intron of BIRC3(+):38bp after exon 3	GRCh37	DUPLICATION	BIRC3 (NM_182962) - C11orf70 (NM_032930) rearrangement: c.853+38:BIRC3_c.193-1514:C11orf70dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BIRC3:C11orf70}	268034	NA	0	8	0	8
P-0033523-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52595774	52642831	Intron of PBRM1(-):8bp after exon 26	Intron of PBRM1(-):497bp after exon 17	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.2567+498_c.4132+9dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : out of frame	47057	NA	0	10	10	10
P-0033810-T01-IM6	SOMATIC	ETV6	PDE3A	12	12	12036140	20576277	Intron of ETV6(+):1Kb before exon 6	Intron of PDE3A(+):53Kb after exon 1	GRCh37	DELETION	ETV6 (NM_001987) -PDE3A (NM_000921) Rearrangement : c.1010-1239:ETV6_c.960+53099:PDE3A	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ETV6:PDE3A}	8540137	NA	0	46	10	47
P-0033832-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39884677	42868279	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1767:TMPRSS2_c.39+62909:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2983602	NA	0	16	10	18
P-0033925-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157528564	157529420	Exon 20 of ARID1B(+)	3-UTR of ARID1B(+):430Kb after coding stop	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.6115_c.*395inv	PRECISE		MANUAL_OK	5to5	-	856	NA	0	9	10	9
P-0033939-T01-IM6	SOMATIC	FAM135B	RECQL4	8	8	139223221	145738161	Intron of FAM135B(-):13Kb before exon 8	Intron of RECQL4(-):7bp before exon 17	GRCh37	DUPLICATION	FAM135B (NM_015912) - RECQL4 (NM_004260) rearrangement: c.670-13309:FAM135B_c.2757-7:RECQL4	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FAM135B:RECQL4}	6514940	NA	0	57	10	64
P-0033975-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098875	178103924	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):5Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-4925_c.170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5049	NA	0	7	9	7
P-0016870-T02-IM6	SOMATIC	FBXO33	PARP1	14	1	40515347	226549636	IGR: 650Kb before FBXO33(-)	Intron of PARP1(-):33bp after exon 22	GRCh37	TRANSLOCATION	PARP1 (NM_001618) rearrangement: t(1;14)(q42.12;q21.1)(chr1:g.226549636::chr14:g.40515347)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	10	0	10
P-0016870-T02-IM6	SOMATIC	RICTOR	RICTOR	5	5	38947740	38953618	Intron of RICTOR(-):197bp before exon 32	Exon 28 of RICTOR(-)	GRCh37	DUPLICATION	RICTOR (NM_152756) rearrangement: c.2735_c.4137-197dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5878	NA	0	20	10	21
P-0033799-T01-IM6	SOMATIC	MDM2	CCT2	12	12	69202891	69992823	Intron of MDM2(+):96bp before exon 2	Intron of CCT2(+):622bp after exon 14	GRCh37	DUPLICATION	MDM2 (NM_002392) rearrangement: c.1435+622:CCT2_c.15-97:MDM2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CCT2:MDM2}	789932	NA	0	13	10	13
P-0033799-T01-IM6	SOMATIC	SLX4	TRAP1	16	16	3634944	3767194	Intron of SLX4(-):72bp before exon 13	Intron of TRAP1(-):227bp after exon 1	GRCh37	DELETION	TRAP1 (NM_016292) - SLX4 (NM_032444) rearrangement: c.88+228:TRAP1_c.4637-72:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRAP1:SLX4}	132250	NA	0	14	10	14
P-0033799-T01-IM6	SOMATIC	MALT1	MALT1	18	18	56402552	56433959	Exon 13 of MALT1(+)	IGR: 95Kb before MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1594:MALT1_chr18:g.56433959del	PRECISE		MANUAL_OK	3to5	-	31407	NA	0	10	10	10
P-0021067-T03-IM6	SOMATIC	LOC286114	ETV1	8	7	20906392	13971205	IGR: 75Kb before LOC286114(+)	Exon 8 of ETV1(-)	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) Rearrangement : t(7;8)(q21.3;p21.3)(chr7:g.13971205::chr8:g.20906392)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	46	10	48
P-0033818-T01-IM6	SOMATIC	EED	CPED1	11	7	85963175	120874085	Intron of EED(+):14bp before exon 3	Intron of CPED1(+):3Kb before exon 16	GRCh37	TRANSLOCATION	EED (NM_003797) Rearrangement : t(7;11)(q31.31;q14.2)(chr7:g.120874085::chr11:g.85963175)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	10	51
P-0033823-T01-IM6	SOMATIC	WHSC1L1	CHRNB3	8	8	38173401	42588145	Intron of WHSC1L1(-):28bp after exon 10	Intron of CHRNB3(+):453bp after exon 5	GRCh37	INVERSION	WHSC1L1 (NM_023034) - CHRNB3 (NM_000749) Rearrangement : c.1986+29:WHSC1L1_c.1242+453:CHRNB3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {WHSC1L1:CHRNB3}	4414744	NA	0	3	9	3
P-0028180-T02-IM6	SOMATIC	ALK	DIRC3	2	2	29448822	218382626	Intron of ALK(-):391bp before exon 19	3-UTR of DIRC3(-):239Kb after coding stop	GRCh37	DELETION	ALK (NM_004304) Rearrangement: c.3068-391:ALK_chr2:g.218382626del	PRECISE		MANUAL_OK	3to5	-	188933804	NA	0	36	10	37
P-0033988-T01-IM6	SOMATIC	RB1	RB1	13	13	48881534	48882507	Exon 2 of RB1(+)	Intron of RB1(+):965bp after exon 2	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.256_c.264+965del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	973	NA	7	11	9	6
P-0027600-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857235	42877216	Intron of TMPRSS2(-):3Kb after exon 5	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	INVERSION	TMPRSS2: (NM_001135099) rearrangement: c.556+3086_c.55+2661inv	PRECISE		MANUAL_OK	3to3	-	19981	NA	0	13	10	13
P-0003578-T01-IM5	SOMATIC	DNMT1	PDE4A	19	19	10250952	10560243	Exon 33 of DNMT1(-)	Intron of PDE4A(+): 417bp after exon 4	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	-	309291	NA	0	12	32	11
P-0005612-T01-IM5	SOMATIC	LOC729991-MEF2B	MYC	19	8	19261497	128674678	Exon 4 of LOC729991-MEF2B(-)	IGR: 74Kb before MYC(+)	GRCh37	TRANSLOCATION	MEF2B (NM_001145785) rearrangement : t(8;19)(8q24.21;19p13.3)(chr8:g.128674678::chr19:g.19261497)	PRECISE		MANUAL_OK	5to5	-	0	NA	2	102	57	98
P-0005803-T01-IM5	SOMATIC	CD274	BCL2L11	9	2	5450120	111883824	Promoter of CD274(+): 383bp from tx start	Intron of BCL2L11(+): 2Kb after exon 2	GRCh37	TRANSLOCATION	CD274 (NM_014143) - BCL2L11 (NM_138621) rearrangement: t(9;2)(p24;q13)(chr9:g.5450120::chr2:g.111883824)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	13	27
P-0007306-T01-IM5	SOMATIC	ARID1A	FAF1	1	1	27057629	51021210	Intron of ARID1A(+): 14bp before exon 3	Intron of FAF1(-): 12Kb after exon 13	GRCh37	INVERSION	FAF1 (NM_007051) - ARID1A (NM_006015)  rearrangement : c.1268+11539:FAF1_c.1351-14:ARID1Ainv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (FAF1-ARID1A)	23963581	NA	0	8	23	8
P-0007306-T01-IM5	SOMATIC	EIF4A2	BCL6	3	3	186501579	187461985	Intron of EIF4A2(+): 151bp after exon 1	5-UTR of BCL6(-): 11Kb before coding start	GRCh37	INVERSION	EIF4A2(NM_001967) - BCL6 (NM_001706) rearrangement : c.29+151:EIF4A2_c.-50+1213:BCL6inv	PRECISE		MANUAL_OK	3to3	Transcript fusion (EIF4A2-BCL6)	960406	NA	0	13	15	13
P-0007557-T01-IM5	SOMATIC	TMEM121	MYC	14	8	106071275	128748713	IGR: 78Kb before TMEM121(+)	5-UTR of MYC(+): 127bp before coding start	GRCh37	TRANSLOCATION	MYC (NM_002467) rearrangement : t(8;14)(q24.21;q32.33)(chr8:g.128748713::chr14:g.106071275)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	8	26
P-0008071-T01-IM5	SOMATIC	NCRNA00202	APC	10	5	27233073	112176009	Promoter of NCRNA00202(-): 2Kb from tx start	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement : t(5;10)(q22.2;p15.3)(chr5:g.112176009::ch10:g.27233073)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (NCRNA00202-APC)	0	NA	0	15	4	15
P-0008071-T01-IM5	SOMATIC	APC	GLRA1	5	5	112173721	151366239	Exon 16 of APC(+)	IGR: 62Kb after GLRA1(-)	GRCh37	INVERSION	APC (NM_000038) rearrangement : c.2430:APC_chr5:g.151366239inv	PRECISE		MANUAL_OK	3to3	-	39192518	NA	0	65	59	64
P-0008071-T01-IM5	SOMATIC	APC	DTWD2	5	5	112175014	117255150	Exon 16 of APC(+)	IGR: 917Kb before DTWD2(-)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement : c.3723:APC_chr5:g.117255150dup	PRECISE		MANUAL_OK	5to3	-	5080136	NA	0	23	34	22
P-0008071-T01-IM5	SOMATIC	APC	PRELID2	5	5	112176300	144927485	Exon 16 of APC(+)	IGR: 211Kb before PRELID2(-)	GRCh37	DELETION	APC (NM_000038) rearrangement : c.5009:APC_chr5:g.144927485del	PRECISE		MANUAL_OK	3to5	-	32751185	NA	0	32	39	32
P-0008418-T01-IM5	SOMATIC	TCF3	ZBTB7A	19	19	1650306	4042673	5-UTR of TCF3(-): 59bp before coding start	IGR: 3Kb before ZBTB7A(-)	GRCh37	INVERSION	TCF3 (NM_001136139) Rearrangement :  c.-59_chr19:g.4042673inv	PRECISE		MANUAL_OK	3to3	-	2392367	NA	0	8	18	8
P-0009696-T01-IM5	SOMATIC	VILL	MYD88	3	3	38035162	38182056	5-UTR of VILL(+): 2bp before coding start	Exon 3 of MYD88(+)	GRCh37	DUPLICATION	MYD88 (NM_002468) - VILL (NM_015873) Rearrangement : c.680:MYD88_c.-2:VILLdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (MYD88-VILL)	146894	NA	0	72	68	72
P-0011114-T01-IM5	SOMATIC	CRLF2	DHRSX	X	X	1321232	2007888	Intron of CRLF2(-): 40bp after exon 4	IGR: 130Kb before DHRSX(-)	GRCh37	INVERSION	CRLF2 (NM_022148) rearrangement: chrX:g.2007888_c.483+40inv	PRECISE		MANUAL_OK	5to5	-	686656	NA	0	30	27	22
P-0014292-T01-IM6	SOMATIC	CIITA	SOCS1	16	16	10972749	11349141	Intron of CIITA(+): 2Kb after exon 1	Exon 2 of SOCS1(-)	GRCh37	DELETION	SOCS1(NM_003745) Rearrangement : c.195:SOCS1_chr16:10972749del	PRECISE		MANUAL_OK	3to5	Antisense fusion	376392	NA	0	8	16	8
P-0015272-T01-IM6	SOMATIC	BMPR1A	NUDT9P1	10	10	88681535	92944869	Intron of BMPR1A(+): 83bp after exon 11	IGR: 33Kb before NUDT9P1(-)	GRCh37	DELETION	BMPR1A (NM_004329) Rearrangement : c.1342+83:BMPR1A_chr10:92944869del	PRECISE		MANUAL_OK	3to5	-	4263334	NA	0	21	39	19
P-0023994-T05-IM6	SOMATIC	LMNA	NTRK1	1	1	156107917	156844525	Intron of LMNA(+):361bp before exon 10	Intron of NTRK1(+):107bp after exon 10	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) Fusion (LMNA exon 10 fused with NTRK1 exon 11) : c.1699-362:LMNA_c.1251+107:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LMNA:NTRK1}	736608	NA	0	36	10	36
P-0032779-T01-IM6	SOMATIC	MYO15A	PLK2	17	5	18037660	57752959	Intron of MYO15A(+):960bp after exon 11	Intron of PLK2(-):40bp before exon 8	GRCh37	TRANSLOCATION	PLK2 (NM_006622) -MYO15A (NM_016239) Rearrangement :  t(5;17)(q11.2;p11.2)(chr5:g.57752959::chr17:g.18037660)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PLK2:MYO15A}	0	NA	0	8	10	8
P-0032779-T01-IM6	SOMATIC	FOXP1	PRKCZ	3	1	71037279	2050259	Intron of FOXP1(-):51bp before exon 10	Intron of PRKCZ(+):16Kb before exon 5	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) Rearrangement : t(1;3)(q11.2;p11.2)(chr1:g.2050259::chr3:g.71037279)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	17
P-0032862-T01-IM6	SOMATIC	ALK	EML4	2	2	29447488	42523327	Intron of ALK(-):838bp after exon 19	Intron of EML4(+):671bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion(EML4 exon 11 fused to ALK exon20 ): c.1489+671:EML4_c.3172+839:ALK	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075839	NA	0	83	10	82
P-0034065-T01-IM6	SOMATIC	NF1	NF1	17	17	29448445	29508717	Intron of NF1(+):26Kb after exon 1	Intron of NF1(+):10bp before exon 7	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement: c.60+26058_c.655-11del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	60272	NA	0	19	10	68
P-0034065-T01-IM6	SOMATIC	MUM1	TCF3	19	19	1354350	1619244	Promoter of MUM1(+):2Kb from tx start	Intron of TCF3(-):11bp before exon 15	GRCh37	DELETION	TCF3 (NM_001136139) Rearrangement: c.1327-11:TCF3_chr19:g.1354350del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	264894	NA	0	43	10	43
P-0018373-T02-IM6	SOMATIC	MYD88	OXSR1	3	3	38182656	38206656	Exon 5 of MYD88(+)	Promoter of OXSR1(+):369bp from tx start	GRCh37	INVERSION	MYD88 (NM_002468) Rearrangement : c.809:MYD88_c.-712:OXSR1inv	PRECISE		MANUAL_OK	5to5	-	24000	NA	0	17	10	18
P-0031735-T02-IM6	SOMATIC	USP26	BRAF	X	7	132227150	140486173	IGR: 68Kb before USP26(-)	Intron of BRAF(-):1Kb after exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(X;7)(q26.2;q34)(chrX:g.132227150::chr7:g.140486173)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	10	31
P-0032171-T03-IM6	SOMATIC	OPTN	FGFR2	10	10	13156724	123239789	Intron of OPTN(+):2Kb before exon 5	Intron of FGFR2(-):254bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - OPTN (NM_021980) rearrangement: c.2302-254:FGFR2_c.553-1543:OPTNinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:OPTN}	110083065	NA	0	40	10	48
P-0033884-T01-IM6	SOMATIC	STK11	STK11	19	19	1220496	1222339	Exon 4 of STK11(+)	Intron of STK11(+):334bp after exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.589_c.920+334del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1843	NA	0	57	10	127
P-0034177-T01-IM6	SOMATIC	STARD4	APC	5	5	110839674	112157723	Intron of STARD4(-):2Kb before exon 4	Intron of APC(+):35bp after exon 11	GRCh37	INVERSION	APC (NM_000038) - STARD4 (NM_139164) rearrangement: c.1408+35:APC_c.156-1888:STARD4inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {APC:STARD4}	1318049	NA	0	5	0	5
P-0034177-T01-IM6	SOMATIC	APC	APC	5	5	112169921	112175331	Intron of APC(+):726bp before exon 15	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038 rearrangement: c.1744-727_c.4040del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5410	NA	0	6	5	6
P-0034192-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63512989	63533505	IGR: 12Kb before AXIN2(-)	Exon 6 of AXIN2(-)	GRCh37	DUPLICATION	AXIN2 (NM_004655) rearrangement: c.1649_chr17:g.63512989dup	PRECISE		MANUAL_OK	5to3	-	20516	NA	0	5	8	5
P-0023910-T04-IM6	SOMATIC	MIR4275	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	23	10	23
P-0023910-T04-IM6	SOMATIC	NEDD1	FLT4	12	5	97517987	180046682	IGR: 217Kb before NEDD1(+)	Exon 18 of FLT4(-)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;12)(q25.3;q23.1)(5:180046682::chr12:g.97517987)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	10	31
P-0033848-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47705656	47707833	Exon 14 of MSH2(+)	Intron of MSH2(+):1bp before exon 15	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.2456_c.2459-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2177	NA	0	11	10	12
P-0033848-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097118	178119835	Intron of NFE2L2(-):1bp after exon 4	Intron of NFE2L2(-):9Kb after exon 1	GRCh37	DUPLICATION	NFE2L2 (NM_006164) rearrangement: c.45+9425_c.594+2dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	22717	NA	0	8	0	8
P-0033848-T01-IM6	SOMATIC	KRTAP11-1	DNMT1	21	19	32247604	10291039	IGR: 5Kb before KRTAP11-1(-)	Exon 4 of DNMT1(-)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(19;21)(p13.2;q22.11)(chr19:g.10291039::chr21:g.32247604)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0033848-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52584482	52626703	Exon 29 of PBRM1(-)	Intron of PBRM1(-):3Kb before exon 19	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.2780-3432_c.4531del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	42221	NA	0	4	4	4
P-0033899-T01-IM6	SOMATIC	KMT2A	PHC2	11	1	118342947	33810963	Exon 3 of KMT2A(+)	Intron of PHC2(-):9Kb after exon 8	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) - PHC2 (NM_198040) rearrangement: t(1;11)(p35.3;q23.3)(chr1:g.33810963::chr11:g.118342947)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2A:PHC2}	0	NA	0	6	10	5
P-0034172-T01-IM6	SOMATIC	RPS6KB2	CABP4	11	11	67200776	67225039	Intron of RPS6KB2(+):34bp before exon 10	Intron of CABP4(+):4bp before exon 4	GRCh37	DUPLICATION	CABP4 (NM_145200) - RPS6KB2 (NM_003952) rearrangement: c.542-5:CABP4_c.799-35:dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CABP4:RPS6KB2}	24263	NA	0	41	10	41
P-0022960-T02-IM6	SOMATIC	BRD4	SLC12A6	19	15	15365924	34632729	Intron of BRD4(-):183bp after exon 10	Promoter of SLC12A6(-):111Kb from tx start	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(15;19)(q14;p13.2)(chr15:g.34632729::chr19:g.15365924)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	5	7	5
P-0023910-T05-IM6	SOMATIC	MIR4275	FAT1	4	4	29213349	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213349inv	IMPPRECISE		MANUAL_OK	5to5	-	158310600	NA	0	5	0	5
P-0034092-T01-IM6	SOMATIC	AMER2	FLT1	13	13	25721451	28880888	IGR: 14Kb before AMER2(-)	Exon 29 of FLT1(-)	GRCh37	DUPLICATION	FLT1 (NM_002019) rearrangement: c.3742:FLT1_chr13:g.25721451dup	PRECISE		MANUAL_OK	5to3	-	3159437	NA	0	4	9	4
P-0034098-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40486433	40500444	Intron of STAT3(-):366bp before exon 9	Exon 2 of STAT3(-)	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.91_c.798-366dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	14011	NA	0	3	10	8
P-0034099-T01-IM6	SOMATIC	MUC16	DNMT1	19	19	9038171	10274170	Intron of MUC16(-):35bp before exon 8	Intron of DNMT1(-):134bp before exon 11	GRCh37	DUPLICATION	MUC16 (NM_024690) - DNMT1 (NM_001379) rearrangement: c.36140-35:MUC16_c.844-134:DNMT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MUC16:DNMT1}	1235999	NA	0	23	10	24
P-0034099-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5044624	5064627	Intron of JAK2(+):104bp after exon 5	Intron of JAK2(+):255bp before exon 9	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.468+104_c.1057-256del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	20003	NA	0	5	8	5
P-0034140-T01-IM6	SOMATIC	NCOR1	LSM6	17	4	15983773	147071771	Exon 25 of NCOR1(-)	IGR: 25Kb before LSM6(+)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(4;17)(q31.22;p12)(chr4:g.147071771::chr17:g.15983773)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	37
P-0034215-T01-IM6	SOMATIC	CSNK1G2	DOT1L	19	19	1961329	2226272	5-UTR of CSNK1G2(+):8Kb before coding start	Exon 27 of DOT1L(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) - CSNK1G2 (NM_001319) rearrangement: c.3752:DOT1L_c.-265-8178:CSNK1G2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DOT1L:CSNK1G2}	264943	NA	0	4	10	4
P-0034217-T01-IM6	SOMATIC	FAAH2	POLE	X	12	57359775	133251829	Intron of FAAH2(+):2Kb after exon 4	Intron of POLE(-):154bp after exon 12	GRCh37	TRANSLOCATION	POLE (NM_006231) - FAAH2 (NM_174912) rearrangement: t(X;12)(p11.21;q24.33)(chrX:g.57359775::chr12:g.133251829)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {POLE:FAAH2}	0	NA	0	26	10	25
P-0034236-T01-IM6	SOMATIC	PPM1D	FLJ45079	17	17	58711289	75815341	Exon 3 of PPM1D(+)	IGR: 60Kb before FLJ45079(-)	GRCh37	INVERSION	PPM1D (NM_003620) rearrangement: c.777_chr17:g.75815341inv	PRECISE		MANUAL_OK	5to5	-	17104052	NA	0	45	10	50
P-0034256-T01-IM6	SOMATIC	CDH1	C16orf47	16	16	68856058	73261464	Exon 12 of CDH1(+)	IGR: 101Kb before C16orf47(-)	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.1866_chr16:g.73261464inv	PRECISE		MANUAL_OK	5to5	-	4405406	NA	0	26	10	30
P-0033701-T02-IM6	SOMATIC	RB1	RB1	13	13	49020343	49027159	Intron of RB1(+):7Kb before exon 18	Exon 18 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1696-6786_c.1726del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6816	NA	0	50	10	62
P-0033701-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819998	42873967	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3851:TMPRSS2_c.19-2454:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3053969	NA	0	110	10	116
P-0033701-T02-IM6	SOMATIC	TMPRSS2	CYP3A43	21	7	42873843	99448887	Intron of TMPRSS2(-):4Kb before exon 2	Intron of CYP3A43(+):2Kb after exon 7	GRCh37	TRANSLOCATION	CYP3A43 (NM_022820) - TMPRSS2 (NM_001135099) rearrangement: t(7;21)(q22.1;q22.3)(chr7:g.99448887::chr21:g.42873843)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CYP3A43:TMPRSS2}	0	NA	0	97	0	97
P-0033701-T02-IM6	SOMATIC	PIK3R1	BDP1	5	5	67591386	70728320	Intron of PIK3R1(+):70bp after exon 14	IGR: 23Kb before BDP1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1814+70:PIK3R1_chr5:g.70728320del	PRECISE		MANUAL_OK	3to5	-	3136934	NA	0	36	10	43
P-0011237-T02-IM6	SOMATIC	C2orf80	IDH1	2	2	209046556	209108306	Intron of C2orf80(-):527bp before exon 5	Exon 6 of IDH1(-)	GRCh37	DUPLICATION	C2orf80 (NM_001099334) - IDH1 (NM_005896) rearrangement: c.207-527:C2orf80_c.543:IDH1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C2orf80:IDH1}	61750	NA	0	50	0	53
P-0025031-T02-IM6	SOMATIC	C1orf43	NTRK1	1	1	154192198	156846272	Intron of C1orf43(-):113bp after exon 2	Exon 14 of NTRK1(+)	GRCh37	INVERSION	C1orf43 (NM_001098616) - NTRK1 (NM_002529): c.168+114:C1orf43_c.1713:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {C1orf43:NTRK1}	2654074	NA	0	110	10	136
P-0025031-T02-IM6	SOMATIC	TCTN2	BAP1	12	3	124179461	52440015	Exon 10 of TCTN2(+)	Intron of BAP1(-):87bp before exon 10	GRCh37	TRANSLOCATION	BAP1 (NM_004656) - TCTN2 (NM_024809) rearrangment: t(3;12)(p21.1;q24.31)(chr3:g.52440015::chr12:g.124179461)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TCTN2:BAP1}	0	NA	0	40	10	40
P-0034291-T01-IM6	SOMATIC	CSTF2	NPM1	X	5	100027214	170820119	IGR: 48Kb before CSTF2(+)	Intron of NPM1(+):137bp after exon 6	GRCh37	TRANSLOCATION	NPM1 (NM_002520) rearrangement: t(X;5)(q22.1;q35.1)(chrX:g.100027214::chr5:g.170820119)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0034296-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876482	42871419	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1303:TMPRSS2_c.40-58938:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994937	NA	0	7	0	7
P-0034296-T01-IM6	SOMATIC	LOC101928539	PLK2	5	5	57189065	57753920	3-UTR of LOC101928539(-):6Kb after coding stop	Exon 5 of PLK2(-)	GRCh37	DELETION	PLK2 (NM_006622) rearrangement: c.704:PLK2_chr5:g.57189065del	PRECISE		MANUAL_OK	3to5	-	564855	NA	0	23	10	23
P-0034384-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39863686	42872622	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2506:TMPRSS2_c.18+6601:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008936	NA	0	7	10	9
P-0034391-T01-IM6	SOMATIC	IKZF1	ZNF713	7	7	50358698	55967697	Intron of IKZF1(+):1bp after exon 2	IGR: 13Kb before ZNF713(+)	GRCh37	INVERSION	IKZF1 (NM_006060) rearrangement: c.40+1:IKZF1_chr7:g.55967697inv	PRECISE		MANUAL_OK	3to3	-	5608999	NA	0	10	10	21
P-0034399-T01-IM6	SOMATIC	FGFR2	CUL3	10	2	123240519	225329353	Intron of FGFR2(-):984bp before exon 18	IGR: 6Kb before CUL3(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(2;10)(q36.1;q26.13)(chr2:g.225329353::chr10:g.123240519)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	50	10	51
P-0008695-T04-IM6	SOMATIC	TP53	EIF5	17	14	7577159	103799131	Intron of TP53(-):4bp before exon 8	Promoter of EIF5(+):1Kb from tx start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(14;17)(q32.32;p13.1)(chr14:g.103799131::chr17:g.7577159)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EIF5:TP53}	0	NA	0	193	10	193
P-0008695-T04-IM6	SOMATIC	MITF	MIR4444-1	3	3	69998105	75341861	Intron of MITF(+):96bp before exon 6	IGR: 78Kb before MIR4444-1(+)	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.763-97_chr3:g.75341861inv	PRECISE		MANUAL_OK	5to5	-	5343756	NA	0	10	10	15
P-0034375-T01-IM6	SOMATIC	SDHC	DDR2	1	1	161299442	162743078	Intron of SDHC(+):1Kb after exon 3	Intron of DDR2(+):180bp before exon 14	GRCh37	INVERSION	SDHC(NM_003001) - DDR2(NM_006182) Rearrangement: c.179+1155:SDHC_c.1729-181:DDR2inv	PRECISE		MANUAL_OK	5to5	-	1443636	NA	0	7	10	7
P-0034394-T01-IM6	SOMATIC	LINC01419	RAD21	8	8	83572326	117866665	IGR: 744Kb before LINC01419(+)	Exon 9 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.980:RAD21_chr8:g.83572326inv	PRECISE		MANUAL_OK	3to3	-	34294339	NA	0	103	10	102
P-0034418-T01-IM6	SOMATIC	RB1	RB1	13	13	49051415	49058840	Intron of RB1(+):75bp before exon 26	Promoter of RB1(+):181Kb from tx start	GRCh37	INVERSION	RB1 (NM_000321) : c.2664-76_c.*4633inv	PRECISE		MANUAL_OK	5to5	-	7425	NA	0	17	10	17
P-0034419-T01-IM6	SOMATIC	FGFR3	JAKMIP1	4	4	1808749	6098039	Intron of FGFR3(+):88bp after exon 17	Intron of JAKMIP1(-):9Kb after exon 3	GRCh37	INVERSION	FGFR3 (NM_000142) - JAKMIP1 (NM_001099433) fusion (FGFR3 exons 1-17 fused to JAKM1P1 exons 4-21): c.2274+88:FGFR3_c.624+9161:JAKMIP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FGFR3:JAKMIP1}	4289290	NA	0	349	10	345
P-0023401-T02-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061967	38074562	Intron of FOXA1(-):51bp before exon 2	IGR: 16Kb before FOXA1(-)	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: chr14:g.38074562_c.73-51inv	IMPPRECISE		MANUAL_OK	3to3	-	12595	NA	0	153	0	153
P-0023401-T02-IM6	SOMATIC	AR	AR	X	X	66935442	66943402	Intron of AR(+):2Kb before exon 5	Intron of AR(+):125bp before exon 8	GRCh37	INVERSION	AR (NM_000044) Rearrangement: c.2174-1878_c.2608-126inv	PRECISE		MANUAL_OK	5to5	-	7960	NA	0	11	10	11
P-0030503-T01-IM6	SOMATIC	CHRNA6	IDH1	8	2	42635681	209116140	IGR: 28Kb before CHRNA6(-)	Intron of IDH1(-):13bp after exon 3	GRCh37	TRANSLOCATION	IDH1 (NM_005896)  rearrangement: t(2;8)(q34;p11.21)(chr2:g.209116140::chr8:g.42635681)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	10	41
P-0031341-T01-IM6	SOMATIC	ACAT1	ATM	11	11	108017976	108200938	Intron of ACAT1(+):20bp before exon 12	Intron of ATM(+):2bp before exon 50	GRCh37	DELETION	ACAT1 (NM_000019) - ATM (NM_000051) Rearrangement: c.1164-21:ACAT1_c.7308-3:ATMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ACAT1:ATM}	182962	NA	0	90	10	91
P-0031352-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162817805	162864466	Intron of PARK2(-):47Kb after exon 2	Exon 2 of PARK2(-)	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.171+46537_c.47del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	46661	NA	0	8	8	8
P-0031374-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876684	42873062	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2946:TMPRSS2_c.40-59140:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996378	NA	0	77	10	80
P-0031403-T01-IM6	SOMATIC	FGFR1	ADAM32	8	8	38277124	39070929	Exon 10 of FGFR1(-)	Intron of ADAM32(+):2Kb after exon 12	GRCh37	INVERSION	FGFR1 (NM_001174067) - ADAM32 (NM_145004) Rearrangement : c.1304:FGFR1_c.1233+2086:ADAM32	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR1:ADAM32}	793805	NA	0	85	10	97
P-0031416-T01-IM6	SOMATIC	NF1	NF1	17	17	29663626	29664711	Intron of NF1(+):26bp before exon 42	Intron of NF1(+):111bp after exon 43	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement : c.6148-27_c.6642+111dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	1085	NA	0	2	10	2
P-0031451-T01-IM6	SOMATIC	RB1	RB1	13	13	48935408	48955508	Intron of RB1(+):1Kb after exon 7	Exon 17 of RB1(+)	GRCh37	DUPLICATION	RB1 (NM_000321) Rearrangement: c.718+1145_c.1624dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	20100	NA	0	47	10	49
P-0031451-T01-IM6	SOMATIC	EGFR	ZNF716	7	7	55222863	58023128	Intron of EGFR(+):659bp before exon 8	IGR: 513Kb before ZNF716(+)	GRCh37	DELETION	EGFR (NM_005228) Rearrangement: c.890-660:EGFR_chr7:g.58023128del	PRECISE		MANUAL_OK	3to5	-	2800265	NA	0	40	10	47
P-0031451-T01-IM6	SOMATIC	NOTCH1	EGFL7	9	9	139431604	139562732	Intron of NOTCH1(-):7Kb after exon 2	5-UTR of EGFL7(+):2bp before coding start	GRCh37	DELETION	NOTCH1 (NM_017617) Rearrangement: c.140+6872:NOTCH1_c.-3:EGFL7del	PRECISE		MANUAL_OK	3to5	-	131128	NA	0	159	10	182
P-0031619-T01-IM6	SOMATIC	SDHA	LOC102467073	5	5	256496	266958	Exon 15 of SDHA(+)	Promoter of LOC102467073(-):3Kb from tx start	GRCh37	INVERSION	SDHA (NM_004168) rearrangement: c.1956:SDHA_chr5:g.266958inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SDHA:LOC102467073}	10462	NA	0	6	10	20
P-0031643-T01-IM6	SOMATIC	SLX4	SLX4	16	16	3629949	3640075	Promoter of SLX4(-):1Kb from tx start	Exon 12 of SLX4(-)	GRCh37	DELETION	SLX4 (NM_032444) Rearrangement: c.*2394_c.3564del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10126	NA	0	46	10	96
P-0031790-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15376004	15378263	Intron of BRD4(-):160bp after exon 5	Exon 4 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.523_c.849+161del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2259	NA	0	24	0	25
P-0031833-T01-IM6	SOMATIC	GALNT11	KMT2C	7	7	151818189	151873710	Intron of GALNT11(+):136bp after exon 11	Exon 38 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.8828:KMT2C_chr7:g.151818189del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	55521	NA	0	8	10	8
P-0031936-T01-IM6	SOMATIC	KLF5	NOTCH1	13	9	73635766	139410553	Intron of KLF5(+):232bp before exon 2	Intron of NOTCH1(-):7bp before exon 10	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;13)(q34.3;q22.1)(chr9:g.139410553::chr13:g.73635766)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	24	10	24
P-0032048-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48569483	48591798	5-UTR of SMAD4(+):4Kb before coding start	Exon 9 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.-127-3807_c.961del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22315	NA	0	70	10	72
P-0032064-T01-IM6	SOMATIC	C10orf107	ARID5B	10	10	63509118	63852457	Intron of C10orf107(+):11Kb before exon 5	Exon 10 of ARID5B(+)	GRCh37	DUPLICATION	ARID5B (NM_032199) - C10orf107 (NM_173554) rearrangement: c.3235:ARID5B_c.289-10699:C10orf107dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARID5B:C10orf107}	343339	NA	0	5	7	5
P-0032071-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48566403	48575138	5-UTR of SMAD4(+):7Kb before coding start	Exon 3 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) Rearrangement: c.-127-6887_c.332del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8735	NA	0	31	10	32
P-0032073-T01-IM6	SOMATIC	DNMT1	ZNF69	19	19	10264887	12012730	Intron of DNMT1(-):81bp after exon 21	Intron of ZNF69(+):2Kb before exon 2	GRCh37	DUPLICATION	DNMT1 (NM_001379) Rearrangement: c.1971+82:DNMT1_chr19:g.12012730dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	1747843	NA	0	10	10	43
P-0032124-T01-IM6	SOMATIC	TCF7L2	PPP2CA	10	5	114920515	133531112	Intron of TCF7L2(+):65bp after exon 13	Promoter of PPP2CA(-):1Kb from tx start	GRCh37	TRANSLOCATION	TCF7L2 (NM_001146274) - PPP2CA (NM_002715) Rearrangement : t(5;10)(q31.1;q25.2)(chr5:g.133531112::chr10:g.114920515)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {TCF7L2:PPP2CA}	0	NA	0	29	10	28
P-0032233-T01-IM6	SOMATIC	SLC22A18	INPPL1	11	11	2934580	71944115	Intron of SLC22A18(+):3Kb before exon 6	Intron of INPPL1(+):3bp before exon 17	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.1952-4:INPPL1_chr11:g.2934580inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	69009535	NA	0	17	10	17
P-0032233-T01-IM6	SOMATIC	RPS15	CCNE1	19	19	1441479	30313195	Promoter of RPS15(+):3Kb from tx start	Exon 10 of CCNE1(+)	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.889:CCNE1_chr19:g.1441479inv	IMPPRECISE		MANUAL_OK	5to5	-	28871716	NA	0	15	0	18
P-0032233-T01-IM6	SOMATIC	POM121L12	FOXP1	7	3	52191431	71021205	IGR: 912Kb before POM121L12(+)	Intron of FOXP1(-):500bp after exon 14	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) rearrangement: t(3;7)(p13;p12.1)(chr3:g.71021205::chr7:g.52191431)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	6
P-0032390-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39830479	42872348	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2232:TMPRSS2_c.19-12935:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3041869	NA	0	41	10	42
P-0032458-T01-IM6	SOMATIC	EP300	RMI2	22	16	41573186	11453170	Exon 31 of EP300(+)	IGR: 14Kb before RMI2(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) Rearrangement: t(16;22)(p13.13;q13.2)(chr16:g.11453170::chr22:g.41573186)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	40	10	42
P-0032480-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39905997	42869429	Intron of ERG(-):42Kb after exon 3	Intron of TMPRSS2(-):616bp after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG(NM_004449) Rearrangement : c.126+617:TMPRSS2_c.39+41589:ERG	PRECISE		MANUAL_OK	3to3	-	2963432	NA	0	14	10	12
P-0032516-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27106706	27109645	Exon 20 of ARID1A(+)	Promoter of ARID1A(+):87Kb from tx start	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.6317:ARID1A_chr1:g.27109645del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2939	NA	0	12	10	12
P-0032663-T01-IM6	SOMATIC	PAX8	CBWD2	2	2	113992013	114132526	Intron of PAX8(-):957bp after exon 9	IGR: 63Kb before CBWD2(+)	GRCh37	DELETION	PAX8 (NM_003466) Rearrangement: c.1087+958:PAX8_chr2:g.114132526del	PRECISE		MANUAL_OK	3to5	-	140513	NA	0	13	10	13
P-0032663-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39857561	42877555	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.55+2322:TMPRSS2_c.18+12726:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019994	NA	0	12	10	21
P-0032819-T01-IM6	SOMATIC	NF1	NF1	17	17	29550792	29560281	Intron of NF1(+):207bp after exon 16	Intron of NF1(+):50bp after exon 27	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1845+207_c.3708+50dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : in frame	9489	NA	0	15	10	17
P-0032823-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72989585	72992738	Intron of ZFHX3(-):2Kb after exon 2	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.1307_c.2719+1741del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3153	NA	0	38	10	48
P-0033150-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971012	21976201	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):5Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.-1375_c.346del CDKN2Ap14ARF (NM_058195) rearrangement : c.194-4994_c.389del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5189	NA	0	111	10	121
P-0033171-T01-IM6	SOMATIC	CIC	CIC	19	19	42792417	42795401	Intron of CIC(+):290bp after exon 6	Exon 10 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.931+290_c.2481inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2984	NA	0	16	10	15
P-0033171-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8208089	8485172	IGR: 106Kb before PTPRD(-)	Intron of PTPRD(-):54bp after exon 29	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: chr9:g.8208089_c.3153+55del	PRECISE		MANUAL_OK	3to5	-	277083	NA	0	11	10	11
P-0033183-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11101786	11170345	Intron of SMARCA4(+):39bp before exon 8	Intron of SMARCA4(+):83bp before exon 33	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1246-40_c.4636-84del	PRECISE		MANUAL_OK	3to5	Deletion of 25 exons : in frame	68559	NA	0	38	10	39
P-0033191-T01-IM6	SOMATIC	PLAGL2	ASXL1	20	20	30785141	31021265	Exon 3 of PLAGL2(-)	Exon 11 of ASXL1(+)	GRCh37	INVERSION	ASXL1 (NM_015338) - PLAGL2 (NM_002657) Rearrangement: c.1264:ASXL1_c.605:PLAGL2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASXL1:PLAGL2}	236124	NA	0	24	10	27
P-0033292-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72812219	72822690	IGR: 5Kb before ZFHX3(-)	Exon 10 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.9485:ZFHX3_chr16:g.72812219del	PRECISE		MANUAL_OK	3to5	-	10471	NA	0	65	10	68
P-0033294-T01-IM6	SOMATIC	FANCA	C1orf186	16	1	89877021	206279359	Intron of FANCA(-):93bp after exon 5	5-UTR of C1orf186(-):40Kb before coding start	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(1;16)(q32.1;q24.3)(chr1:g.206279359::chr16:g.89877021)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {FANCA:C1orf186}	0	NA	0	6	10	51
P-0033300-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39830404	42878752	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1125:TMPRSS2_c.19-12860:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3048348	NA	0	19	10	23
P-0033300-T01-IM6	SOMATIC	PIK3R1	TNPO1	5	5	67591142	72070476	Exon 13 of PIK3R1(+)	IGR: 42Kb before TNPO1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1735:PIK3R1_chr5:g.72070476del	PRECISE		MANUAL_OK	3to5	-	4479334	NA	0	5	10	5
P-0033300-T01-IM6	SOMATIC	C8orf46	PREX2	8	8	67428722	68981973	3-UTR of C8orf46(+):23Kb after coding stop	Intron of PREX2(+):96bp before exon 13	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.1444-97:PREX2_chr8:g.67428722inv	IMPPRECISE		MANUAL_OK	5to5	-	1553251	NA	0	5	0	5
P-0033383-T01-IM6	SOMATIC	MGC15885	SMAD3	15	15	62843216	67457608	IGR: 86Kb before MGC15885(-)	Exon 3 of SMAD3(+)	GRCh37	INVERSION	SMAD3 (NM_005902) Rearrangement: c.418:SMAD3_chr15:g.62843216inv	PRECISE		MANUAL_OK	3to3	-	4614392	NA	0	37	10	57
P-0033398-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42861553	42869241	Intron of TMPRSS2(-):33bp before exon 4	Intron of TMPRSS2(-):804bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+805_c.350-33del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	7688	NA	0	18	0	17
P-0033491-T01-IM6	SOMATIC	UPF1	DOCK2	19	5	18964185	169159363	Intron of UPF1(+):26bp after exon 8	Intron of DOCK2(+):14Kb after exon 22	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(5;19)(q35.1;p13.11)(chr5:g.169159363::chr19:g.18964185)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	7
P-0033539-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57486902	57506988	Exon 5 of NAB2(+)	Promoter of STAT6(-):18Kb from tx start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1200:NAB2_chr12:g.57486902inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	20086	NA	0	103	10	102
P-0033548-T01-IM6	SOMATIC	MAP3K13	HES1	3	3	185167527	193808028	Intron of MAP3K13(+):160bp before exon 6	IGR: 46Kb before HES1(+)	GRCh37	INVERSION	MAP3K13 (NM_004721) rearrangement: c.1011-161_chr3:g.193808028inv	PRECISE		MANUAL_OK	5to5	-	8640501	NA	0	30	10	30
P-0033613-T01-IM6	SOMATIC	ETV1	DGKB	7	7	13949284	14243705	Exon 9 of ETV1(-)	Intron of DGKB(-):26Kb before exon 23	GRCh37	DUPLICATION	ETV1 (NM_001163147) - DGKB (NM_004080) rearrangement: c.844:ETV1_c.2126-25929:DGKBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ETV1:DGKB}	294421	NA	0	12	10	12
P-0033634-T01-IM6	SOMATIC	MC4R	FGFR2	18	10	58428114	123244300	IGR: 390Kb before MC4R(-)	Intron of FGFR2(-):608bp after exon 16	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;18)(q26.13;q21.32)(chr10:g.123244300::chr18:g.58428114)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	67	10	65
P-0033634-T01-IM6	SOMATIC	SMARCA4	NANOS2	19	19	11101968	46414845	Exon 8 of SMARCA4(+)	Promoter of NANOS2(-):2Kb from tx start	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.1388_chr19:g.46414845inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMARCA4:NANOS2}	35312877	NA	0	44	10	44
P-0033634-T01-IM6	SOMATIC	INPP4A	NPAS2	2	2	99155351	101565828	Intron of INPP4A(+):2bp before exon 9	Exon 7 of NPAS2(+)	GRCh37	DUPLICATION	NPAS2 (NM_002518) - INPP4A (NM_001134224) rearrangement: c.485-1:NPAS2_c.580-3:INPP4Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NPAS2:INPP4A}	2410477	NA	0	9	10	10
P-0033634-T01-IM6	SOMATIC	ATRX	MAGT1	X	X	76937659	77051146	Exon 9 of ATRX(-)	IGR: 31Kb before MAGT1(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: chrX:g.77051146_c.3089del	PRECISE		MANUAL_OK	3to5	-	113487	NA	0	16	10	17
P-0033742-T01-IM6	SOMATIC	RBFOX2	TET1	22	10	36131794	70427055	Promoter of RBFOX2(-):3Kb from tx start	Intron of TET1(+):42bp after exon 7	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(10;22)(q21.3;q12.3)(chr10:g.70427055::chr22:g.36131794)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	7	10	8
P-0033845-T01-IM6	SOMATIC	RUNX1	DYRK1A	21	21	36253106	38829898	Intron of RUNX1(-):96bp before exon 5	Intron of DYRK1A(+):15Kb before exon 2	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.352-96:RUNX1_chr21:g.38829898del	PRECISE		MANUAL_OK	3to5	-	2576792	NA	0	15	10	16
P-0033855-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11097091	11097864	Exon 4 of SMARCA4(+)	Intron of SMARCA4(+):185bp after exon 5	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.582_c.859+185del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	773	NA	1	63	10	76
P-0034080-T02-IM6	SOMATIC	LINC01467	NAB2	14	12	82091713	57487449	Promoter of LINC01467(-):20Kb from tx start	Intron of NAB2(+):68bp after exon 6	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;14)(q13.3;q31.1)(chr12:g.57487449::chr14:g.82091713)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	16	0	16
P-0034255-T01-IM6	SOMATIC	AXL	HNRNPUL1	19	19	41725494	41772863	Intron of AXL(+):112bp after exon 1	Intron of HNRNPUL1(+):1Kb before exon 2	GRCh37	INVERSION	AXL (NM_021913) - HNRNPUL1 (NM_007040) rearrangement: c.85+112:AXL_c.296-1265:HNRNPUL1inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	47369	NA	0	14	10	14
P-0034289-T01-IM6	SOMATIC	APC	SRP19	5	5	112175615	112194400	Exon 16 of APC(+)	Promoter of SRP19(+):2Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4324:APC_chr5:g.112194400del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	18785	NA	0	35	10	35
P-0034306-T01-IM6	SOMATIC	MEN1	MAML2	11	11	64573712	95957334	Exon 7 of MEN1(-)	Intron of MAML2(-):117Kb after exon 1	GRCh37	DELETION	MAML2 (NM_032427) - MEN1 (NM_000244) rearrangement: c.513+117213:MAML2_c.1056:MEN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAML2:MEN1}	31383622	NA	0	3	3	3
P-0034306-T01-IM6	SOMATIC	ETFA	YAP1	15	11	76604578	102100479	Promoter of ETFA(-):96Kb from tx start	Exon 9 of YAP1(+)	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(11;15)(q22.2;q24.3)(chr11:g.102100479::chr15:g.76604578)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	1	404	10	599
P-0034306-T01-IM6	SOMATIC	IDH2	IDH2	15	15	90630367	90664307	Exon 7 of IDH2(-)	IGR: 37Kb before IDH2(-)	GRCh37	DUPLICATION	IDH2 (NM_002168) rearrangement: c.944:IDH2_chr15:g.90664307dup	PRECISE		MANUAL_OK	5to3	-	33940	NA	0	62	10	68
P-0034352-T01-IM6	SOMATIC	NEGR1	NBPF20	1	1	72058605	145082046	Exon 6 of NEGR1(-)	Intron of NBPF20(+):231Kb before exon 54	GRCh37	INVERSION	NEGR1 (NM_173808) rearrangement: c.835:NEGR1_chr1:g.145082046inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NEGR1:NBPF20}	73023441	NA	0	48	10	56
P-0034379-T01-IM6	SOMATIC	MSRB3	ATR	12	3	65647870	142277934	IGR: 25Kb before MSRB3(+)	Intron of ATR(-):158bp after exon 7	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;12)(q23;q14.3)(chr3:g.142277934::chr12:g.65647870)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	5
P-0034483-T01-IM6	SOMATIC	PALB2	KIAA1715	16	2	23647039	176432726	Exon 4 of PALB2(-)	IGR: 358Kb before KIAA1715(-)	GRCh37	TRANSLOCATION	PALB2 (NM_024675) rearrangement: t(2;16)(q31.1;p12.2)(chr2:g.176432726::chr16:g.23647039)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	135	10	149
P-0034540-T01-IM6	SOMATIC	EMR3	MEF2B	19	19	14787609	19258563	Promoter of EMR3(-):58Kb from tx start	Exon 4 of MEF2B(-)	GRCh37	DUPLICATION	EMR3(NM_032571) - MEF2BNB (NM_001145784) Rearrangement :  c.-2027:EMR3_c.337:MEF2BNBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EMR3:MEF2B}	4470954	NA	0	136	10	156
P-0034540-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5081819	5090242	Exon 19 of JAK2(+)	Intron of JAK2(+):203bp before exon 21	GRCh37	DELETION	JAK2 (NM_004972) Rearrangement : c.2529_c.2762-204del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8423	NA	0	42	10	44
P-0034559-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117643631	117646101	Intron of ROS1(-):1Kb before exon 35	Intron of ROS1(-):523bp before exon 34	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5558-523_c.5642-1074del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2470	NA	0	25	10	26
P-0034643-T01-IM6	SOMATIC	PRSS57	TCF3	19	19	687673	1619041	Intron of PRSS57(-):485bp before exon 4	Intron of TCF3(-):68bp after exon 15	GRCh37	DELETION	TCF3 (NM_001136139) - PRSS57 (NM_214710) rearrangement: c.1450+69:TCF3_c.382-485:PRSSS57del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TCF3:PRSS57}	931368	NA	0	15	10	22
P-0034946-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151845589	151874215	Exon 52 of KMT2C(-)	Exon 38 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.8323_c.13423del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28626	NA	0	114	10	118
P-0034946-T01-IM6	SOMATIC	TEK	TEK	9	9	27207184	27220062	Intron of TEK(+):394bp after exon 15	Exon 21 of TEK(+)	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.2575+394_c.3119del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12878	NA	0	186	10	194
P-0028541-T03-IM6	SOMATIC	ALK	EML4	2	2	29446922	42477458	Intron of ALK(-):528bp before exon 20	Intron of EML4(+):5Kb after exon 2	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion: c.208+4631:EML4_c.3173-528:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13030536	NA	1	8	10	7
P-0034987-T01-IM6	SOMATIC	TEK	SHB	9	9	27168672	37995083	Intron of TEK(+):69bp after exon 3	Intron of SHB(-):20Kb before exon 3	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.475+69:TEK_chr9:g.37995083del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	10826411	NA	0	6	0	6
P-0035003-T01-IM6	SOMATIC	CREBBP	PRDM2	16	1	3830767	13983280	Exon 8 of CREBBP(-)	IGR: 43Kb before PRDM2(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(1;16)(p36.21;p13.3)(chr1:g.13983280::chr16:g.3830767)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	42	10	42
P-0035003-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190670379	190675541	Exon 4 of PMS1(+)	Intron of PMS1(+):5Kb after exon 4	GRCh37	DUPLICATION	PMS1 (NM_000534)  rearrangement: c.317_c.418+5061dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5162	NA	0	33	10	36
P-0035009-T01-IM6	SOMATIC	STK11	STK11	19	19	1207134	1222364	Exon 1 of STK11(+)	Intron of STK11(+):359bp after exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.222_c.920+359del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15230	NA	0	82	10	90
P-0035013-T01-IM6	SOMATIC	STAT3	MSI2	17	17	40469336	55289920	Intron of STAT3(-):94bp before exon 22	IGR: 44Kb before MSI2(+)	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.2102-94:STAT3_chr17:g.55289920del	PRECISE		MANUAL_OK	3to5	-	14820584	NA	0	15	10	15
P-0035021-T01-IM6	SOMATIC	RASA1	SQSTM1	5	5	86642655	179255094	Intron of RASA1(+):114bp after exon 7	Intron of SQSTM1(+):3Kb after exon 6	GRCh37	INVERSION	RASA1 (NM_002890) rearrangement: c.1102+114:RASA1_chr5:g.179255094inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	92612439	NA	0	6	10	6
P-0035076-T01-IM6	SOMATIC	ATM	ATM	11	11	108201422	108235944	Intron of ATM(+):274bp after exon 50	Exon 62 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.7515+274_c.8986del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	34522	NA	0	4	9	5
P-0035081-T01-IM6	SOMATIC	MZT1	DIS3	13	13	73128871	73334620	IGR: 154Kb before MZT1(-)	Intron of DIS3(-):46bp after exon 20	GRCh37	DELETION	DIS3 (NM_014953) rearrangement: chr13:g.73128871_c.2793+47:DIS3del	PRECISE		MANUAL_OK	3to5	-	205749	NA	0	38	10	42
P-0035082-T01-IM6	SOMATIC	TUBB8	ARID1B	10	6	124553	157099972	IGR: 32Kb before TUBB8(-)	Exon 1 of ARID1B(+)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(6;10)(q25.3;p15.3)(chr6:g.57099972::chr10:g.124553)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	22
P-0035082-T01-IM6	SOMATIC	COL5A3	DNMT1	19	19	10105463	10246946	Intron of COL5A3(-):776bp after exon 16	Exon 37 of DNMT1(-)	GRCh37	INVERSION	COL5A3 (NM_015719) - DNMT1 (NM_001379) rearrangement: c.1587+777:COL5A3_c.4459:DNMT1inv	IMPPRECISE		MANUAL_OK	3to3	-	141483	NA	0	60	0	60
P-0035085-T01-IM6	SOMATIC	ALK	EML4	2	2	29447079	42499232	Intron of ALK(-):685bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20 - 29): c.667+7361:EML4_c.3173-685:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052153	NA	0	5	10	5
P-0033921-T03-IM6	SOMATIC	NTRK3	ETV6	15	12	88516534	12031161	Intron of NTRK3(-):33Kb before exon 15	Intron of ETV6(+):6Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12031161::chr15:g.88516534)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	53	10	53
P-0031413-T02-IM6	SOMATIC	CEP295	ATM	11	11	93451816	108172202	Intron of CEP295(+):3Kb before exon 19	Intron of ATM(+):172bp before exon 35	GRCh37	DELETION	KIAA1731(NM_033395) -ATM (NM_000051) Rearrangement : c.5750-2662:KIAA1731_ c.5178-173:ATMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CEP295:ATM}	14720386	NA	0	6	9	7
P-0031543-T03-IM6	SOMATIC	NELL1	NOTCH1	11	9	20700811	139397403	Intron of NELL1(+):1Kb after exon 2	Intron of NOTCH1(-):230bp after exon 27	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;11)(q34.3;p15.1)(chr9:g.139397403::chr11:g.20700811)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	119	10	129
P-0031543-T03-IM6	SOMATIC	NUP214	NOTCH1	9	9	134022400	139410686	Intron of NUP214(+):476bp before exon 14	Intron of NOTCH1(-):140bp before exon 10	GRCh37	INVERSION	NOTCH1 (NM_017617) - NUP214 (NM_005085) rearrangement: c.1556-140:NOTCH1_c.1946-477:NUP214inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {NOTCH1:NUP214}	5388286	NA	0	4	8	4
P-0034385-T02-IM6	SOMATIC	STAT3	BCAS3	17	17	40498956	59012270	Intron of STAT3(-):225bp before exon 3	Intron of BCAS3(+):10Kb after exon 13	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.129-225:STAT3_chr17:g.59012270del	PRECISE		MANUAL_OK	3to5	-	18513314	NA	0	83	10	92
P-0034385-T02-IM6	SOMATIC	MSI2	BCAS3	17	17	55674275	58847151	Exon 8 of MSI2(+)	Intron of BCAS3(+):23Kb after exon 6	GRCh37	DELETION	MSI2 (NM_138962) - BCAS3 (NM_001099432) rearrangement: c.501:MSI2_c.403+22511:BCAS3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MSI2:BCAS3}	3172876	NA	0	85	0	97
P-0034385-T02-IM6	SOMATIC	DROSHA	HCN1	5	5	31451860	45597022	Intron of DROSHA(-):113bp before exon 20	Intron of HCN1(-):48Kb after exon 2	GRCh37	DELETION	HCN1 (NM_021072) - DROSHA (NM_013235) rearrangement: c.849+48265:HCN1_c.2575-113:DROSHAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {HCN1:DROSHA}	14145162	NA	0	4	10	4
P-0034385-T02-IM6	SOMATIC	EGFL7	PNPLA7	9	9	139564191	140375889	Intron of EGFL7(+):18bp after exon 4	Intron of PNPLA7(-):414bp before exon 22	GRCh37	INVERSION	PNPLA7 (NM_001098537) - EGFL7 (NM_201446) rearrangement: c.2348-414:PNPLA7_c.313+18:EGFL7inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PNPLA7:EGFL7}	811698	NA	0	13	10	13
P-0034906-T02-IM6	SOMATIC	ERCC3	MYO7B	2	2	128051193	128317244	Exon 2 of ERCC3(-)	5-UTR of MYO7B(+):53bp before coding start	GRCh37	INVERSION	ERCC3 (NM_000122) - MYO7B (NM_001080527) rearrangement: c.130:ERCC3_c.-23-31:MYO7Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ERCC3:MYO7B}	266051	NA	0	3	6	3
P-0034907-T01-IM6	SOMATIC	BRD4	OVAAL	19	1	15353735	180481230	Exon 14 of BRD4(-)	IGR: 47Kb before OVAAL(+)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(1;19)(q25.3,p13.12)(chr1:g.180481230::chr19:g.15353735)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	130	0	146
P-0034912-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11181413	11182452	Exon 49 of MTOR(-)	Intron of MTOR(-):269bp before exon 48	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.6663-269_c.6823del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1039	NA	0	3	5	3
P-0034912-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21971297	22060034	Intron of CDKN2A(-):90bp before exon 2	5-UTR of CDKN2B-AS1(+):61Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.151-90:CDKN2Ap16INK4A_chr9:g.22060034del CDKN2Ap14ARF (NM_058195) rearrangement : c.194-90:CDKN2Ap14ARF_chr9:g.22060034del	PRECISE		MANUAL_OK	3to5	-	88737	NA	0	40	10	46
P-0034916-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30715493	30717951	Intron of TGFBR2(+):103bp before exon 6	Intron of TGFBR2(+):2Kb after exon 6	GRCh37	INVERSION	TGFBR2 (NM_001024847) rearrangement: c.1330-104_c.1471+2213del	PRECISE		MANUAL_OK	5to5	-	2458	NA	0	6	8	6
P-0034921-T01-IM6	SOMATIC	PTEN	RNLS	10	10	89693137	90317365	Intron of PTEN(+):129bp after exon 5	Intron of RNLS(-):15Kb after exon 4	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.492+129:PTEN_chr10:g.90317365del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	624228	NA	0	5	10	6
P-0035075-T01-IM6	SOMATIC	TP53	TP53	17	17	7569521	7576203	Promoter of TP53(-):2Kb from tx start	Intron of TP53(-):649bp after exon 9	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+650:TP53_chr17:g.7569521inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6682	NA	0	8	10	11
P-0035182-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47018829	47041257	Intron of RBM10(+):10Kb before exon 3	Exon 15 of RBM10(+)	GRCh37	DELETION	RBM10 (NM_001204468) Rearrangement : c.213-9885_c.1880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22428	NA	0	9	10	9
P-0002354-T02-IM6	SOMATIC	DVL2	TP53	17	17	7136643	7577351	Intron of DVL2(-):744bp after exon 1	Intron of TP53(-):147bp after exon 7	GRCh37	DUPLICATION	DVL2 (NM_004422) - TP53 (NM_000546) rearrangement: c.194+745:DVL2_c.782+148:TP53dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DVL2:TP53}	440708	NA	0	3	5	3
P-0002354-T02-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48895788	79965457	Exon 4 of TFE3(-)	Intron of ASPSCR1(+):1Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion: t(X;17)(p11.23;q25.3)(chrX:g.48895788::chr17:g.79965457)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASPSCR1:TFE3}	0	NA	0	29	10	29
P-0034920-T01-IM6	SOMATIC	LINC01524	KMT2B	20	19	51347028	36216506	IGR: 110Kb before LINC01524(+)	Exon 12 of KMT2B(+)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(19;20)(q13.12;q13.2)(chr19:g.36216506::chr20:g.51347028)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	387	10	516
P-0034920-T01-IM6	SOMATIC	SUMO1P1	RTEL1	20	20	52416941	62324107	IGR: 74Kb before SUMO1P1(-)	Intron of RTEL1(+):50bp before exon 29	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.2725-51:RTEL1_chr20:g.52416941del	PRECISE		MANUAL_OK	3to5	-	9907166	NA	0	39	10	40
P-0035073-T01-IM6	SOMATIC	TOB1-AS1	SRSF2	17	17	48972622	74732409	IGR: 29Kb before TOB1-AS1(+)	Exon 2 of SRSF2(-)	GRCh37	INVERSION	SRSF2 (NM_003016) rearrangement: c.500:SRSF2_chr17:g.48972622inv	PRECISE		MANUAL_OK	3to3	-	25759787	NA	0	33	10	33
P-0035163-T01-IM6	SOMATIC	SEC23A	CD274	14	9	39459204	5457150	IGR: 42Kb before SEC23A(-)	Exon 3 of CD274(+)	GRCh37	TRANSLOCATION	CD274 (NM_014143) rearrangement: t(9;14)(p24.1;q21.2)(chr9:g.5457150::chr14:g.39459204)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	10	35
P-0035167-T01-IM6	SOMATIC	NOVA1	PRKD1	14	14	26379764	30103427	IGR: 535Kb before NOVA1(-)	Intron of PRKD1(-):196bp after exon 8	GRCh37	INVERSION	PRKD1 (NM_002742) rearrangement: c.1314+197:PRKD1_chr14:g.26379764inv	PRECISE		MANUAL_OK	5to5	-	3723663	NA	0	27	10	27
P-0035167-T01-IM6	SOMATIC	AR	CYSLTR1	X	X	66931545	77626841	Intron of AR(+):14bp after exon 4	IGR: 100Kb before CYSLTR1(-)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2173+14:AR_chrX:g.77626841del	PRECISE		MANUAL_OK	3to5	-	10695296	NA	0	24	10	27
P-0035211-T01-IM6	SOMATIC	POLE	POLE	12	12	133206398	133220418	Intron of POLE(-):3Kb after exon 45	Intron of POLE(-):4bp after exon 33	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.4290+5_c.6330+2503del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	14020	NA	0	81	10	82
P-0035211-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89828019	89836641	Intron of FANCA(-):337bp after exon 29	Exon 25 of FANCA(-)	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.2249_c.2852+338del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8622	NA	1	221	10	242
P-0121441-T01-IM6	SOMATIC	MEOX1	FGF4	17	11	41724023	69588859	Intron of MEOX1(-):3Kb before exon 2	Exon 2 of FGF4(-)	GRCh37	TRANSLOCATION	FGF4 (NM_002007) rearrangement: t(11;17)(q13.3;q21.31)(chr11:g.69588859::chr17:g.41724023)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	78	10	78
P-0035102-T01-IM6	SOMATIC	CNTN5	PGR	11	11	99683622	100933118	Intron of CNTN5(+):7Kb before exon 4	Intron of PGR(-):59bp after exon 4	GRCh37	INVERSION	PGR (NM_00092) - CNTN5 (NM_001243270) rearrangement: c.2212+60:PGR_c.56-6653:CNTN5inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PGR:CNTN5}	1249496	NA	0	16	0	16
P-0010974-T03-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21974640	22097026	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):24Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.150+37:CDKN2Ap16INK4A_chr9:g.22097026del CDKN2Ap14ARF (NM_058195) rearrangement: c.317-3433:CDKN2Ap14ARF_chr9:g.22097026del	PRECISE		MANUAL_OK	3to5	-	122386	NA	0	22	10	22
P-0013189-T02-IM6	SOMATIC	BIRC3	BIRC2	11	11	102195447	102222633	Exon 3 of BIRC3(+)	Intron of BIRC2(+):959bp after exon 3	GRCh37	DUPLICATION	BIRC2 (NM_001166) - BIRC3 (NM_182962) rearrangement: c.995+959:BIRC2_c.207:BIRC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BIRC2:BIRC3}	27186	NA	0	12	10	12
P-0022166-T02-IM6	SOMATIC	CDC73	CDC73	1	1	193093008	193107426	Intron of CDC73(+):1Kb before exon 2	Intron of CDC73(+):123bp after exon 6	GRCh37	DUPLICATION	CDC73 (NM_024529) rearrangement: c.132-1234_c.512+123dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	14418	NA	0	12	10	12
P-0022166-T02-IM6	SOMATIC	KITLG	ATM	12	11	88926122	108224556	Intron of KITLG(-):95bp after exon 3	Exon 60 of ATM(+)	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(11;12)(q22.3;q21.32)(chr11:g.108224556::chr12:g.88926122)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	48	10	49
P-0022861-T02-IM6	SOMATIC	GRIP1	EPHA5	12	4	67086133	66201820	IGR: 345Kb before GRIP1(-)	Exon 16 of EPHA5(-)	GRCh37	TRANSLOCATION	EPHA5 (NM_004439) rearrangement: t(4;12)(q13.1;q14.3)(chr4:g.66201820::chr12:g.67086133)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0022861-T02-IM6	SOMATIC	ATRX	PPM1H	X	12	76907807	63147303	Exon 15 of ATRX(-)	Intron of PPM1H(-):16Kb before exon 5	GRCh37	TRANSLOCATION	ATRX (NM_000489) - PPM1H (NM_020700) rearrangement: t(X;12)(q21.1;q14.2)(chrX:g.76907807::chr12:g.63147303)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	24	10	23
P-0031325-T02-IM6	SOMATIC	FLT1	TNFRSF21	13	6	28886307	47260798	Intron of FLT1(-):72bp before exon 26	Intron of TNFRSF21(-):6Kb before exon 2	GRCh37	TRANSLOCATION	TNFRSF21 (NM_014452) -  FLT1 (NM_002019) rearrangement: t(6;13)(p12.3;q12.2)(chr6:g.47260798::chr13:g.28886307)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TNFRSF21:FLT1}	0	NA	0	9	0	9
P-0034569-T02-IM6	SOMATIC	ALK	EML4	2	2	29446514	42553077	Intron of ALK(-):120bp before exon 20	Intron of EML4(+):216bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20-29): c.2243-217:EML4_c.3173-120:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13106563	NA	0	57	10	56
P-0035120-T01-IM6	SOMATIC	KIT	SRP72	4	4	55593955	57331639	Intron of KIT(+):33bp before exon 12	Promoter of SRP72(+):2Kb from tx start	GRCh37	DELETION	KIT (NM_000222) rearrangement: c.1775-34:KIT_chr4:g.57331639del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {KIT:SRP72}	1737684	NA	0	14	10	18
P-0035121-T01-IM6	SOMATIC	ALK	EML4	2	2	29447383	42503133	Intron of ALK(-):943bp after exon 19	Intron of EML4(+):5Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4857:EML4_c.3172+944:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13055750	NA	0	25	10	24
P-0035122-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1900440	1905974	5-UTR of WHSC1(+):2Kb before coding start	Exon 3 of WHSC1(+)	GRCh37	INVERSION	WHSC1 (NM_001042424) rearrangement: c.-29-1913_c.629inv	PRECISE		MANUAL_OK	5to5	-	5534	NA	0	2	4	1
P-0035124-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27081454	27106596	Intron of ARID1A(+):6Kb before exon 5	Exon 20 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1921-5893_c.6207dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	25142	NA	0	4	6	4
P-0035219-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42836406	42871834	Promoter of TMPRSS2(-):71bp from tx start	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1718_c.*1663del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	35428	NA	0	38	10	40
P-0035219-T01-IM6	SOMATIC	DROSHA	NPR3	5	5	31405726	32816052	Intron of DROSHA(-):57bp after exon 34	IGR: 105Kb before NPR3(+)	GRCh37	INVERSION	DROSHA (NM_013235) rearrangement: c.3994+58:DROSHA_chr5:g.32816052inv	PRECISE		MANUAL_OK	5to5	-	1410326	NA	0	8	10	8
P-0035226-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68867268	68868038	Exon 16 of CDH1(+)	3-UTR of CDH1(+):97Kb after coding stop	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.2515_c.*636inv	PRECISE		MANUAL_OK	5to5	-	770	NA	0	21	10	30
P-0035226-T01-IM6	SOMATIC	SMAD2	RERE	18	1	45368323	8565611	Intron of SMAD2(-):2bp before exon 11	Intron of RERE(-):3Kb after exon 8	GRCh37	TRANSLOCATION	RERE (NM_001042681) - SMAD2 (NM_001003652) rearrangement: t(1;18)(p36.23;q21.1)(chr1:g.8565611::chr18:g.45368323)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RERE:SMAD2}	0	NA	0	8	0	8
P-0035226-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57484398	57485888	Intron of GNAS(+):6bp before exon 8	3-UTR of GNAS(+):19Kb after coding stop	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.586-7_c.*4inv	PRECISE		MANUAL_OK	5to5	-	1490	NA	0	20	10	20
P-0035227-T01-IM6	SOMATIC	TP53	TP53	17	17	7576478	7577658	Intron of TP53(-):374bp after exon 9	Intron of TP53(-):50bp before exon 7	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.673-50_c.993+375inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1180	NA	0	2	10	2
P-0035240-T01-IM6	SOMATIC	RARA	GJD3	17	17	38506231	38525291	Intron of RARA(+):54bp after exon 4	IGR: 8Kb before GJD3(-)	GRCh37	DELETION	RARA (NM_000964) rearrangement: c.469+54_chr17:g.38525291del	PRECISE		MANUAL_OK	3to5	-	19060	NA	0	21	10	21
P-0035270-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39975032	42869918	3-UTR of ERG(-):59Kb after coding stop	Intron of TMPRSS2(-):127bp after exon 2	GRCh37	DELETION	TMPRSS2:NM_001135099 - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 2-11):	PRECISE		MANUAL_OK	3to5	-	2894886	NA	0	71	10	74
P-0035272-T01-IM6	SOMATIC	KEAP1	S1PR5	19	19	10597571	10638808	Intron of KEAP1(-):77bp before exon 6	IGR: 15Kb before S1PR5(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1709-77_chr19:g.10638808del	PRECISE		MANUAL_OK	3to5	-	41237	NA	0	29	10	31
P-0035276-T01-IM6	SOMATIC	TTC19	NCOR1	17	17	15913161	15943733	Intron of TTC19(+):3Kb after exon 7	Intron of NCOR1(-):21bp after exon 43	GRCh37	DELETION	NCOR1 (NM_006311) - TTC19 (NM_017775) rearrangement: c.6733+22:NCOR1_c.676+3279:TTC19del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	30572	NA	0	59	10	59
P-0035283-T01-IM6	SOMATIC	ALOX12-AS1	ALOX12B	17	17	6914967	7978842	3-UTR of ALOX12-AS1(-):686bp after coding stop	Intron of ALOX12B(-):70bp after exon 12	GRCh37	DELETION	ALOX12B (NM_001139) rearrangement: c.1654+71:ALOX12B_chr17:g.6914967del	IMPPRECISE		MANUAL_OK	3to5	-	1063875	NA	0	10	0	10
P-0035284-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39881109	42869055	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):990bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+991:TMPRSS2_c.40-63565:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2987946	NA	0	129	10	132
P-0035373-T01-IM6	SOMATIC	MGA	MGA	15	15	41935537	42046624	IGR: 17Kb before MGA(+)	Intron of MGA(+):10bp before exon 18	GRCh37	DELETION	MGA (NM_001164273) rearrangement: chr15:g.41935537_c.7009-11del	PRECISE		MANUAL_OK	3to5	-	111087	NA	0	12	10	12
P-0035373-T01-IM6	SOMATIC	TSC2	PKD1	16	16	2138262	2161814	Exon 41 of TSC2(+)	Exon 15 of PKD1(-)	GRCh37	DELETION	TSC2 (NM_000548) Rearrangement: c.5195:TSC2_chr16:g.2161814del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	23552	NA	0	9	10	14
P-0035373-T01-IM6	SOMATIC	TP53	TP53	17	17	7574949	7579369	Intron of TP53(-):916bp before exon 10	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) Rearrangement: c.318_c.994-916del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4420	NA	0	9	10	9
P-0035373-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41197699	41205477	Exon 23 of BRCA1(-)	Intron of BRCA1(-):2Kb before exon 20	GRCh37	DELETION	BRCA1 (NM_007294) Rearrangement: c.5278-2343_c.5588del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7778	NA	0	4	5	4
P-0035373-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47139601	47198271	Intron of SETD2(-):30bp before exon 9	Intron of SETD2(-):7Kb after exon 1	GRCh37	DELETION	SETD2 (NM_014159) Rearrangement: c.71+7073_c.5016-30del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	58670	NA	0	10	10	10
P-0035374-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117866903	117879030	Intron of RAD21(-):196bp before exon 9	5-UTR of RAD21(-):19Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) Rearrangement: c.-32-30_c.938-196del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	12127	NA	0	7	9	7
P-0035375-T01-IM6	SOMATIC	PDZD8	TAP1	10	6	119130943	32820038	Intron of PDZD8(-):3Kb after exon 1	Intron of TAP1(-):22bp before exon 3	GRCh37	TRANSLOCATION	TAP1 (NM_000593) Rearrangement: t(6;10)(p21.32;q26.11)(chr6:g.32820038::chr10:g.119130943)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	68	10	70
P-0021655-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683965	32416267	Intron of EWSR1(+):629bp before exon 9	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416267::chr22:g.29683965)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	105	10	102
P-0021655-T02-IM6	SOMATIC	INPP4B	INPP4B	4	4	143003354	143438689	Intron of INPP4B(-):16bp before exon 25	5-UTR of INPP4B(-):489Kb before coding start	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.2488-16:INPP4B_chr4:g.143438689del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	435335	NA	0	5	10	5
P-0025071-T02-IM6	SOMATIC	KRAS	MS4A2	12	11	25378611	59861079	Exon 4 of KRAS(-)	Intron of MS4A2(+):48bp after exon 5	GRCh37	TRANSLOCATION	KRAS (NM_033360) - MS4A2 (NM_000139) rearrangement: t(11;12)(q12.2;p12.1)(chr11:g.59861079::chr12:g.25378611)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KRAS:MS4A2}	0	NA	0	9	10	11
P-0025071-T02-IM6	SOMATIC	LINC01446	KIT	7	4	53837010	55603373	3-UTR of LINC01446(-):43Kb after coding stop	Exon 20 of KIT(+)	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(4;7)(q12;p11.2)(chr4:g.55603373::chr7:g.53837010)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	13
P-0033922-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684081	32414578	Intron of EWSR1(+):513bp before exon 9	Intron of WT1(-):277bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fuses with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:32414578::chr22:29684081)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	15	10	15
P-0035448-T01-IM6	SOMATIC	EIF3G	DNMT1	19	19	10228347	10247750	Intron of EIF3G(-):483bp before exon 6	Intron of DNMT1(-):10bp after exon 36	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.4441+11:DNMT1_chr19:g.10228347inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	19403	NA	0	11	10	11
P-0035466-T01-IM6	SOMATIC	NTRK1	ATP1A2	1	1	156844714	160106162	Exon 11 of NTRK1(+)	Intron of ATP1A2(+):2bp after exon 18	GRCh37	DUPLICATION	ATP1A2 (NM_000702) - NTRK1 (NM_002529) rearrangement: c.2563+2:ATP1A2_c.1268:NTRK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATP1A2:NTRK1}	3261448	NA	0	3	7	3
P-0035468-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186505394	186506758	Intron of EIF4A2(+):21bp after exon 9	Intron of EIF4A2(+):155bp before exon 11	GRCh37	INVERSION	EIF4A2 (NM_001967) rearrangement: c.999+21_c.1080-156inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1364	NA	0	63	10	62
P-0035473-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48582124	48604506	Intron of SMAD4(+):761bp after exon 5	Intron of SMAD4(+):119bp before exon 12	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.667+761_c.1448-120del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	22382	NA	0	4	10	5
P-0018156-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41260562	41275290	5-UTR of CTNNB1(+):5Kb before coding start	Exon 9 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.-48-4950_c.1456del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14728	NA	0	21	10	21
P-0018156-T02-IM6	SOMATIC	PTPRD	PTPRD	9	9	8297043	8341511	IGR: 17Kb before PTPRD(-)	Intron of PTPRD(-):181bp after exon 40	GRCh37	DELETION	PTPRD (NM_002839) Rearrangement: c.4947+182:PTPRD_chr9:8297043del	PRECISE		MANUAL_OK	3to5	-	44468	NA	0	7	10	7
P-0022333-T01-IM6	SOMATIC	DNAJB1	F2RL3	19	19	14627720	16998356	Exon 2 of DNAJB1(-)	Promoter of F2RL3(+):1Kb from tx start	GRCh37	DELETION	DNAJB1 (NM_006145) Rearrangement : c.350:DNAJB1_c.-1645:F2RL3del	IMPPRECISE		MANUAL_OK	3to5	-	2370636	NA	0	45	0	49
P-0025100-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314237	43611511	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):520bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) and RET (NM_020975) Fusion (KIF5B exon 16 fused to RET exon 12): c.1726-2273:KIF5B_c.2137-788:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297274	NA	0	48	10	54
P-0025100-T02-IM6	SOMATIC	RAD21	PARK2	8	6	117875650	162807539	Intron of RAD21(-):152bp before exon 3	Intron of PARK2(-):57Kb after exon 2	GRCh37	TRANSLOCATION	PARK2 (NM_004562) - RAD21 (NM_006265) Rearrangement : t(6;8)(q26;q24.11)(chr6:g.162807539::chr8:g.117875650)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PARK2:RAD21}	0	NA	0	6	8	6
P-0031660-T03-IM6	SOMATIC	PTPRD	PTPRD	9	9	8269329	8524981	IGR: 45Kb before PTPRD(-)	Exon 18 of PTPRD(-)	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.623:PTPRD_chr9:g.8269329inv	PRECISE		MANUAL_OK	3to3	-	255652	NA	0	41	10	41
P-0032382-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688342	128676273	Intron of EWSR1(+):134bp before exon 12	Intron of FLI1(+):801bp before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-11 fused in-frame with FLI1 exons 7-9): t(11;22)(q24.3;q12.2)(chr11:g.128676273::chr22:g.29688342)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	87	10	89
P-0035172-T01-IM6	SOMATIC	KMT2D	LYZ	12	12	49431897	69736346	Exon 34 of KMT2D(-)	IGR: 6Kb before LYZ(+)	GRCh37	INVERSION	KMT2D (NM_003482) Rearrangement : c.9242:KMT2D_chr12:g.69736346inv	PRECISE		MANUAL_OK	3to3	-	20304449	NA	0	26	10	26
P-0035172-T01-IM6	SOMATIC	STARD3	ERBB2	17	17	37797906	37868242	5-UTR of STARD3(+):12Kb before coding start	Exon 8 of ERBB2(+)	GRCh37	DUPLICATION	ERBB2 (NM_004448) - STARD3 (NM_006804) Rearrangement:c.963:ERBB3_c.-52+4422:STARD3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB2:STARD3}	70336	NA	0	31	10	31
P-0035499-T01-IM6	SOMATIC	DNMT3A	DTNB	2	2	25468856	25800064	Intron of DNMT3A(-):32bp after exon 12	Intron of DTNB(-):191bp before exon 8	GRCh37	DUPLICATION	DNMT3A (NM_022552) - DTNB (NM_021907) fusion: c.1474+33:DNMT3A_c.710-19dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DNMT3A:DTNB}	331208	NA	0	4	6	4
P-0035522-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151872336	151874747	Intron of KMT2C(-):939bp after exon 38	Exon 38 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.7791_c.9262+940inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2411	NA	0	18	10	21
P-0035576-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21971205	22006179	Exon 2 of CDKN2A(-)	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936)  - CDKN2A (NM_000077) Rearrangement: c.224:CDKN2B_c.153:CDKN2Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN2B:CDKN2A}	34974	NA	0	41	0	60
P-0020945-T02-IM6	SOMATIC	DOT1L	DOT1L	19	19	2210131	2213379	Intron of DOT1L(+):267bp before exon 13	Intron of DOT1L(+):158bp before exon 17	GRCh37	DELETION	DOT1L (NM_032482) Rearrangement : c.1006-268_c.1558-159del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	3248	NA	0	12	7	13
P-0020945-T02-IM6	SOMATIC	IL1RL1	MDM4	2	1	102872474	204495627	IGR: 55Kb before IL1RL1(+)	Intron of MDM4(+):65bp after exon 3	GRCh37	TRANSLOCATION	MDM4 (NM_002393) Rearrangement : t(1,2)(q12.1,q32.1)(chr1:g.204495627::chr2:g.102872474)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	16
P-0022663-T01-IM6	SOMATIC	SLC24A2	CDKN2Ap14ARF	9	9	19553211	21974644	Intron of SLC24A2(-):3Kb before exon 6	Intron of CDKN2Ap14ARF(-):19kb before exon 1	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) - SLC24A2 (NM_020344) rearrangement: c.194-3437:CDKN2Ap14ARF_c.1348-2945:SLC24A2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon {CDKN2Ap14ARF:SLC24A2}	2421433	NA	NA	28	10	NA
P-0022663-T01-IM6	SOMATIC	SLC24A2	CDKN2Ap16INK4A	9	9	19553211	21974644	Intron of SLC24A2(-):3Kb before exon 6	Intron of CDKN2Ap16INK4A(-):33bp before exon 1	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) - SLC24A2 (NM_020344) rearrangement: c.150+33:CDKN2Ap16INK4A_c.1348-2945:SLC24A2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon {CDKN2Ap16INK4A:SLC24A2}	2421433	NA	NA	28	10	NA
P-0022683-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48593477	48599988	Exon 10 of SMAD4(+)	Intron of SMAD4(+):3Kb before exon 11	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1228_c.1309-3020del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6511	NA	0	14	10	18
P-0022683-T01-IM6	SOMATIC	POLRMT	MAP2K2	19	19	627029	4095531	Intron of POLRMT(-):2Kb before exon 4	Intron of MAP2K2(-):84bp before exon 9	GRCh37	DUPLICATION	POLRMT (NM_005035) - MAP2K2 (NM_030662) rearrangement: c.823-1775:POLRMT_c.415-84:MAP2K2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {POLRMT:MAP2K2}	3468502	NA	0	15	10	15
P-0022703-T01-IM6	SOMATIC	BRD4	AKAP8	19	19	15354293	15412725	Exon 14 of BRD4(-)	IGR: 52Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2587_chr19:g.15412725del	PRECISE		MANUAL_OK	3to5	-	58432	NA	0	23	10	23
P-0022871-T01-IM6	SOMATIC	CBFB	CBFB	16	16	67062695	67063376	Promoter of CBFB(+):354bp from tx start	Exon 1 of CBFB(+)	GRCh37	DELETION	CBFB (NM_022845) Rearrangement : c.-616_c.66del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	681	NA	0	80	10	107
P-0022909-T01-IM6	SOMATIC	PRMT8	PIK3C2G	12	12	3507554	18658033	Intron of PRMT8(+):17Kb after exon 1	Intron of PIK3C2G(+):192bp before exon 23	GRCh37	DELETION	PRMT8 (NM_019854) - PIK3C2G (NM_004570) - rearrangement: c.48+16946_c.3031-193del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PRMT8:PIK3C2G}	15150479	NA	0	4	10	4
P-0022936-T01-IM6	SOMATIC	NTRK1	PEAR1	1	1	156848955	156855832	Exon 15 of NTRK1(+)	IGR: 8Kb before PEAR1(+)	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.1847_chr1:g.156855832del	IMPPRECISE		MANUAL_OK	3to5	-	6877	NA	0	48	0	52
P-0022936-T01-IM6	SOMATIC	STK11	NTRK1	19	1	1204186	156848955	Promoter of STK11(+):2Kb from tx start	Exon 15 of NTRK1(+)	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) - STK11 (NM_000455) rearrangement: t(1;19)(;)(chr1:g.56848955::chr19:g.204186)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NTRK1:STK11}	0	NA	0	5	0	5
P-0022966-T01-IM6	SOMATIC	DIS3	KLF12	13	13	73345904	74532643	Intron of DIS3(-):28bp after exon 11	Intron of KLF12(-):14Kb before exon 3	GRCh37	DUPLICATION	DIS3 (NM_014953) - KLF12 (NM_007249)  Rearrangement : c.1605+29:DIS3_c.34-14436:KLF12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DIS3:KLF12}	1186739	NA	0	10	10	19
P-0022966-T01-IM6	SOMATIC	EP300	ACO2	22	22	41574787	41877659	Exon 31 of EP300(+)	Intron of ACO2(+):12Kb after exon 1	GRCh37	DUPLICATION	EP300 (NM_001429) - ACO2 (NM_001098) Rearrangement : c.7072:EP300_c.36+12473:ACO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ACO2:EP300}	302872	NA	0	7	10	7
P-0023116-T01-IM6	SOMATIC	TP53	TP53	17	17	7576468	7580584	Intron of TP53(-):384bp after exon 9	5-UTR of TP53(-):8Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.-28-644_c.993+385dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	4116	NA	0	33	10	34
P-0023121-T01-IM6	SOMATIC	TET1	TET1	10	10	70333148	70433415	Exon 2 of TET1(+)	Intron of TET1(+):613bp after exon 8	GRCh37	DUPLICATION	TET1 (NM_030625) rearrangement: c.1053_c.4824+613dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	100267	NA	0	7	10	7
P-0023215-T01-IM6	SOMATIC	RHCG	ETV6	15	12	90039073	12035854	Intron of RHCG(-):518bp after exon 1	Intron of ETV6(+):2Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.1)(chr12:g.12035854::chr15:g.90039073)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	64	10	68
P-0023215-T01-IM6	SOMATIC	CDKN2Ap14ARF	LINC01239	9	9	21971243	22734473	Intron of CDKN2Ap14ARF:36bp before exon 2	5-UTR of LINC01239(+):90Kb before coding start	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement: c.194-36:CDKN2Ap14ARF_chr9:g.22734473inv	PRECISE		MANUAL_OK	3to3	-	763230	NA	NA	92	10	NA
P-0023215-T01-IM6	SOMATIC	CDKN2Ap16INK4A	LINC01239	9	9	21971243	22734473	Intron of CDKN2Ap16INK4A:36bp before exon 2	5-UTR of LINC01239(+):90Kb before coding start	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.151-36:CDKN2Ap16INK4A_chr9:g.22734473inv	PRECISE		MANUAL_OK	3to3	-	763230	NA	NA	92	10	NA
P-0023220-T01-IM6	SOMATIC	MKLN1	BRAF	7	7	131016826	140496796	Intron of MKLN1(+):4Kb after exon 1	Intron of BRAF(-):3Kb before exon 8	GRCh37	INVERSION	MKLN1 (NM_013255) - BRAF (NM_004333) rearrangement: c.98+4070:MKLN1_c.981-2529:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MKLN1:BRAF}	9479970	NA	0	212	10	207
P-0028196-T02-IM6	SOMATIC	DOT1L	TMPRSS9	19	19	2217162	2386106	Intron of DOT1L(+):73bp after exon 21	IGR: 4Kb before TMPRSS9(+)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.2544+73:DOT1L_chr19:g.2386106	PRECISE		MANUAL_OK	3to5	-	168944	NA	0	3	8	3
P-0028196-T02-IM6	SOMATIC	WHSC1	WHSC1	4	4	1889982	1932366	5-UTR of WHSC1(+):12Kb before coding start	Exon 6 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.2544+73:WHSC1_chr19:g.2386106del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	42384	NA	0	5	10	11
P-0033407-T01-IM6	SOMATIC	LOC100129055	RET	10	10	38458902	43617402	IGR: 6Kb before LOC100129055(+)	Exon 16 of RET(+)	GRCh37	INVERSION	RET (NM_020975) Rearrangement: c.2739:RET_chr10:g.38458902inv	PRECISE		MANUAL_OK	3to3	-	5158500	NA	0	7	10	7
P-0033746-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27031660	27092901	Intron of ARID1A(+):8Kb after exon 1	Intron of ARID1A(+):44bp after exon 9	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+7629_c.2878+44del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	61241	NA	0	46	10	47
P-0034842-T02-IM6	SOMATIC	ZNRF3	EWSR1	22	22	29367859	29692679	Intron of ZNRF3(+):15Kb before exon 2	Intron of EWSR1(+):321bp after exon 13	GRCh37	DUPLICATION	EWSR1 (NM_013986) - ZNRF3 (NM_001206998) rearrangement: c.1075+321:EWSR1_c.301-15205:ZNRF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EWSR1:ZNRF3}	324820	NA	0	14	10	14
P-0035502-T01-IM6	SOMATIC	DAXX	MLN	6	6	33287873	33806571	Exon 5 of DAXX(-)	IGR: 44Kb before MLN(-)	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.1416:DAXX_chr6:g.33806571inv	PRECISE		MANUAL_OK	5to5	-	518698	NA	0	8	10	8
P-0035506-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39834375	42878701	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-16831:ERG_c.55+1176:TMPRSS2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERG:TMPRSS2}	3044326	NA	0	7	0	8
P-0035512-T01-IM6	SOMATIC	ETV6	PTPRN2	12	7	12012958	158331279	Intron of ETV6(+):6Kb after exon 4	Intron of PTPRN2(-):49Kb before exon 2	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(7;12)(q36.3;p13.2)(chr7:g.158331279::chr12:g.12012958)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	38	10	45
P-0035512-T01-IM6	SOMATIC	INPP4A	INPP4A	2	2	99169441	99177208	Intron of INPP4A(+):9bp after exon 15	Intron of INPP4A(+):1Kb after exon 18	GRCh37	DELETION	INPP4A (NM_001134224) rearrangement: c.1362+9_c.1870+1250del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	7767	NA	0	4	10	4
P-0035513-T01-IM6	SOMATIC	ZNF697	NOTCH2	1	1	120181580	120465433	5-UTR of ZNF697(-):16Kb before coding start	Intron of NOTCH2(-):32bp before exon 27	GRCh37	DUPLICATION	ZNF697 (NM_001080470) - NOTCH2 (NM_024408) rearrangement: c.-38+8734:ZNF697_c.4860-32:NOTCH2dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {ZNF697:NOTCH2}	283853	NA	0	138	10	145
P-0035513-T01-IM6	SOMATIC	TAS2R10	ETV6	12	12	10975159	12014143	Promoter of TAS2R10(-):3Kb from tx start	Intron of ETV6(+):8Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+7648:ETV6_chr12:g.10975159del	PRECISE		MANUAL_OK	3to5	-	1038984	NA	0	106	10	108
P-0035533-T01-IM6	SOMATIC	PABPC3	NOTCH2	13	1	25683937	120465556	IGR: 14Kb before PABPC3(+)	Intron of NOTCH2(-):155bp before exon 27	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;13)(p11.2;q12.13)(chr1:g.120465556::chr13:g.25683937)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	6	5
P-0035533-T01-IM6	SOMATIC	LOC388406	SOX9	17	17	58643537	70119231	5-UTR of LOC388406(+):20Kb before coding start	Intron of SOX9(+):118bp after exon 2	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.685+118:SOX9_chr17:g.58643537inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11475694	NA	0	13	10	14
P-0035533-T01-IM6	SOMATIC	SFRP1	PRDM14	8	8	41231148	70978656	IGR: 112Kb before SFRP1(-)	Exon 5 of PRDM14(-)	GRCh37	DELETION	PRDM14 (NM_024504) rearrangement: c.997:PRDM14_chr8:g.41231148del	PRECISE		MANUAL_OK	3to5	-	29747508	NA	0	16	10	18
P-0035483-T01-IM6	SOMATIC	TP53	EXOC6B	17	2	7578081	72450142	Intron of TP53(-):95bp after exon 6	Intron of EXOC6B(-):39Kb before exon 21	GRCh37	TRANSLOCATION	TP53 (NM_000546) - EXOC6B (NM_015189) rearrangement: t(2;17)(p13.2;p13.1)(chr2:g.72450142::chr17:g.7578081)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TP53:EXOC6B}	0	NA	0	5	0	5
P-0035483-T01-IM6	SOMATIC	CEACAM7	CIC	19	19	42190095	42796820	Intron of CEACAM7(-):694bp after exon 2	Exon 14 of CIC(+)	GRCh37	INVERSION	CEACAM7 (NM_006890) - CIC (NM_015125) rearrangemnet:  c.427+695:CEACAM7_c.3278:CICinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CEACAM7:CIC}	606725	NA	0	28	10	35
P-0035483-T01-IM6	SOMATIC	EP300	EP300	22	22	41551156	41554950	Intron of EP300(+):39bp after exon 17	Intron of EP300(+):446bp after exon 19	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3261+39_c.3590+446del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3794	NA	0	14	0	14
P-0035484-T01-IM6	SOMATIC	DICER1	DICER1	14	14	95428840	95562894	IGR: 124Kb before DICER1(-)	Exon 25 of DICER1(-)	GRCh37	DUPLICATION	DICER1 (NM_030621) rearrangement: chr14:g.95428840_c.4363dup	PRECISE		MANUAL_OK	5to3	-	134054	NA	0	22	10	22
P-0035577-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48535585	48591860	IGR: 21Kb before SMAD4(+)	Exon 9 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: g.48535585_c.1023del	PRECISE		MANUAL_OK	3to5	-	56275	NA	0	111	10	116
P-0035584-T01-IM6	SOMATIC	CHEK2	MED13	22	17	29115449	60026179	Exon 5 of CHEK2(-)	Intron of MED13(-):2Kb before exon 29	GRCh37	TRANSLOCATION	CHEK2 (NM_007194) Rearrangement: t(17;22)(q23.2;q12.1)(chr17:g.60026179::chr22:g.29115449)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	49	10	48
P-0035586-T01-IM6	SOMATIC	SMAD3	AAGAB	15	15	67430421	67497181	Intron of SMAD3(+):27Kb before exon 2	Intron of AAGAB(-):695bp before exon 8	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.207-26812:SMAD3_chr15:g.67497181del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	66760	NA	0	30	10	30
P-0035619-T01-IM6	SOMATIC	COL22A1	AGO2	8	8	139882916	141559275	Intron of COL22A1(-):7Kb after exon 3	Exon 12 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) - COL22A1 (NM_152888) rearrangement: c.1526:AGO2_c.658+7077:COL22A1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AGO2:COL22A1}	1676359	NA	0	21	10	21
P-0004752-T01-IM5	SOMATIC	NRG1	CD74	8	5	32549502	149782966	Intron of NRG1(+): 36Kb before exon 3	Intron of CD74(-): 91bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement  : t(5;8)(5q32;8p12)(chr8:g.32549502::chr5:g.149782966)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CD74-NRG1)	0	NA	0	14	16	14
P-0004752-T02-IM5	SOMATIC	NRG1	CD74	8	5	32549504	149782964	Intron of NRG1(+):36Kb before exon 6	Intron of CD74(-):89bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) fusion (CD74 exons 1-6 fused with NRG1 exons 6-13) : t(5;8)(5q32;8p12)(chr5:g.149782964::chr8:g.32549504)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD74:NRG1}	0	NA	0	22	10	38
P-0004752-T03-IM6	SOMATIC	NRG1	CD74	8	5	32549504	149782964	Intron of NRG1(+):36Kb before exon 6	Intron of CD74(-):89bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) fusion (CD74 exons 1-6 fused with NRG1 exons 6-13) : t(5;8)(5q32;8p12)(chr5:g.149782964::chr8:g.32549504)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD74:NRG1}	0	NA	0	70	10	88
P-0006237-T04-IM6	SOMATIC	ROS1	COL4A3BP	6	5	117658391	74766330	Exon 31 of ROS1(-)	Intron of COL4A3BP(-):11Kb before exon 3	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(5;6)(q13.3;q22.1)(chr5:g.74766330::chr6:g.117658391)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	73	10	79
P-0007136-T02-IM6	SOMATIC	ZFHX3	CFDP1	16	16	72827277	75353704	Exon 9 of ZFHX3(-)	Intron of CFDP1(-):15Kb before exon 6	GRCh37	DELETION	CFDP1 (NM_006324) - ZFHX3 (NM_006885) rearrangement: c.651-14624:CFDP1_c.9304:ZFHX3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CFDP1:ZFHX3}	2526427	NA	0	11	10	11
P-0007136-T02-IM6	SOMATIC	ASXL1	DNMT3B	20	20	31021147	31397731	Exon 11 of ASXL1(+)	Promoter of DNMT3B(+):48Kb from tx start	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.1146_chr20:g.31397730del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ASXL1:DNMT3B}	376584	NA	0	53	10	111
P-0035267-T01-IM6	SOMATIC	SPEN	LCK	1	1	16257959	32731249	Exon 11 of SPEN(+)	5-UTR of LCK(+):9Kb before coding start	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.5224_chr1:g.32731249inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	16473290	NA	0	75	10	75
P-0001216-T03-IM6	SOMATIC	ERBB4	ERBB4	2	2	212285288	212329937	Exon 25 of ERBB4(-)	Intron of ERBB4(-):34Kb before exon 21	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.2488-34112_c.3013del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	44649	NA	0	7	10	7
P-0007788-T04-IM6	SOMATIC	KDR	KDR	4	4	55964173	56013994	Intron of KDR(-):130bp after exon 17	IGR: 70Kb before KDR(-)	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.2509+131_chr4:g.56013994inv	PRECISE		MANUAL_OK	3to3	-	49821	NA	0	4	5	4
P-0015376-T01-IM6	SOMATIC	UBL3	WHSC1L1	13	8	30470955	38175374	IGR: 46Kb after UBL3(-)	Intron of WHSC1L1(-): 1Kb after exon 9	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) rearrangement: t(8;13)(p11.23;q12.3)(chr8:g.38175374::chr13:g.30470955)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	6	5
P-0015961-T03-IM6	SOMATIC	RYR2	FH	1	1	237262426	241680785	Intron of RYR2(+):57Kb after exon 1	Intron of FH(-):169bp before exon 2	GRCh37	INVERSION	RYR2 (NM_001035) - FH (NM_000143) rearrangement: c.48+56557:RYR2_c.133-169:FHinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RYR2:FH}	4418359	NA	0	8	10	8
P-0015961-T03-IM6	SOMATIC	ALK	EML4	2	2	29446526	42501324	Intron of ALK(-):132bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-6 fused to ALK exons 20-29): c.668-6666:EML4_c.3173-132:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054798	NA	0	47	10	47
P-0016809-T02-IM6	SOMATIC	ARID1A	NUDC	1	1	27094264	27264975	Intron of ARID1A(+):16bp before exon 11	Intron of NUDC(+):3Kb before exon 3	GRCh37	DUPLICATION	NUDC (NM_006600) - ARID1A (NM_006015) rearrangement: c.160-2973:NUDC_c.2989-17:ARID1Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NUDC:ARID1A}	170711	NA	0	5	7	5
P-0016809-T02-IM6	SOMATIC	RB1	RB1	13	13	48952621	48954145	Intron of RB1(+):1Kb before exon 14	Intron of RB1(+):43bp before exon 15	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1333-1109_c.1390-44del.	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1524	NA	0	11	10	12
P-0016809-T02-IM6	SOMATIC	ACLY	TAP2	17	6	40049233	32797080	Intron of ACLY(-):52bp after exon 15	Intron of TAP2(-):96bp after exon 11	GRCh37	TRANSLOCATION	TAP2 (NM_018833) rearrangement: t(6;17)(p21.32;q21.2)(chr6:g.32797080::chr17:g.40049233)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	6	9	6
P-0016809-T02-IM6	SOMATIC	GPR1-AS	IDH1	2	2	207074689	209113139	5-UTR of GPR1-AS(+):56Kb before coding start	Exon 4 of IDH1(-)	GRCh37	INVERSION	IDH1 (NM_005896) rearrangement: c.368:IDH1_g.207074689inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IDH1:GPR1-AS}	2038450	NA	0	7	10	8
P-0020823-T01-IM6	SOMATIC	LPHN3-AS1	TET2	4	4	63484452	106193783	IGR: 547Kb before LPHN3-AS1(-)	Exon 10 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: chr4:g.63484452_c.4245:TET2del	PRECISE		MANUAL_OK	3to5	-	42709331	NA	0	3	9	3
P-0021448-T03-IM6	SOMATIC	FGFR2	PKP4	10	2	123242661	159395413	Intron of FGFR2(-):550bp after exon 17	Intron of PKP4(+):6Kb after exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - PKP4 (NM_003628) rearrangement: t(2;10)(q24.1;q26.13)(chr2:g.159395413::chr10:g.123242661)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:PKP4}	0	NA	0	63	10	81
P-0021497-T01-IM6	SOMATIC	IGF2	ASCL2	11	11	2161466	2283381	Exon 2 of IGF2(-)	IGR: 6Kb before ASCL2(-)	GRCh37	INVERSION	IGF2 (NM_001127598) rearrangement: c.61:IGF2_chr11:g.2283381inv	PRECISE		MANUAL_OK	3to3	-	121915	NA	0	14	10	14
P-0022458-T01-IM6	SOMATIC	CDKN2A	CDKN2B-AS1	9	9	21974631	22074751	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):46Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.150+46_chr9:g.22074751del	PRECISE		MANUAL_OK	3to5	-	100120	NA	0	41	10	45
P-0025551-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89341506	89426678	Exon 10 of ANKRD11(-)	5-UTR of ANKRD11(-):92Kb before coding start	GRCh37	DUPLICATION	ANKRD11 (NM_013275) rearrangement:  c.-59-43192_c.7564dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	85172	NA	0	38	10	43
P-0025764-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123128217	123200069	5-UTR of STAG2(+):28Kb before coding start	Exon 22 of STAG2(+)	GRCh37	DUPLICATION	STAG2 (NM_001042749) Rearrangement : c.-162-27000_c.2141del	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	71852	NA	0	28	10	32
P-0025791-T03-IM6	SOMATIC	URAD	FLT3	13	13	28557771	28609667	Intron of URAD(-):5Kb after exon 1	Exon 12 of FLT3(-)	GRCh37	DELETION	URAD (NM_001105577) - FLT3 (NM_004119) Rearrangement : c.175+4829:URAD_c.1562:FLT3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FLT3:URAD}	51896	NA	0	6	10	6
P-0025948-T02-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25455543	25471193	Promoter of DNMT3A(-):286bp from tx start	Intron of DNMT3A(-):72bp before exon 7	GRCh37	DUPLICATION	DNMT3A (NM_022552) Rearrangement : c.640-72_c.*1605dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	15650	NA	0	10	10	11
P-0026253-T01-IM6	SOMATIC	GATA3	LINC01206	10	3	8106193	181861092	Intron of GATA3(+):92bp after exon 4	IGR: 191Kb before LINC01206(+)	GRCh37	TRANSLOCATION	GATA3 (NM_002051) Rearrangement : t(3;10)(q26.33;p14)(chr3:g.181861092::chr10:g.8106193)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	1	7	0	8
P-0027309-T03-IM6	SOMATIC	PPP1R14B	RPS6KA4	11	11	64015463	64138009	Promoter of PPP1R14B(-):4Kb from tx start	Intron of RPS6KA4(+):25bp before exon 16	GRCh37	DELETION	RPS6KA4 (NM_003942) rearrangement: c.1958-26:RPS6KA4_chr11:g.64015463del	PRECISE		MANUAL_OK	3to5	-	122546	NA	0	60	10	62
P-0029928-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162170166	162647065	Intron of PARK2(-):37Kb after exon 7	Intron of PARK2(-):25Kb before exon 4	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.413-24781_c.871+36638del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	476899	NA	0	11	10	11
P-0030526-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151891244	152037737	Intron of KMT2C(-):31bp before exon 31	Intron of KMT2C(-):10Kb before exon 3	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.251-9913_c.4541-31del	PRECISE		MANUAL_OK	3to5	Deletion of 28 exons : in frame	146493	NA	0	9	10	10
P-0030526-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44918718	44921277	Intron of KDM6A(+):7bp after exon 12	Intron of KDM6A(+):613bp after exon 14	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.1194+7_c.1425+613del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2559	NA	0	27	10	29
P-0031357-T01-IM6	SOMATIC	RB1	RB1	13	13	49037920	49052441	Exon 21 of RB1(+)	Intron of RB1(+):901bp after exon 26	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2160_c.2713+901del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14521	NA	0	65	10	69
P-0031621-T01-IM6	SOMATIC	NCOA3	MYCNUT	20	2	46254078	16067094	Intron of NCOA3(+):46bp before exon 5	5-UTR of MYCNUT(+):9Kb before coding start	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) rearrangement: t(2;20)(p24.3;q13.12)(chr2:g.16067094::chr20:g.46254078)	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {MYCNUT:NCOA3}	0	NA	0	10	0	11
P-0032410-T01-IM6	SOMATIC	WHSC1	RNF4	4	4	1977168	2480077	Intron of WHSC1(+):41bp after exon 20	5-UTR of RNF4(+):12Kb before coding start	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.3621+41:WHSC1_chr4:g.2480077del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {WHSC1:RNF4}	502909	NA	0	6	10	6
P-0033184-T01-IM6	SOMATIC	DICER1	DICER1	14	14	95557080	95572426	Intron of DICER1(-):80bp before exon 29	Exon 20 of DICER1(-)	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.2939_c.5604-80del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15346	NA	0	4	10	5
P-0034908-T01-IM6	SOMATIC	NOS1AP	DDR2	1	1	162303312	162725168	Intron of NOS1AP(+):397bp after exon 5	Intron of DDR2(+):75bp after exon 6	GRCh37	DUPLICATION	DDR2 (NM_006182) - NOS1AP (NM_014697) rearrangement: c.565+75:DDR2_c.453+397:NOS1APdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DDR2:NOS1AP}	421856	NA	0	41	0	42
P-0035557-T01-IM6	SOMATIC	PRKACA	DNAJB1	19	19	14227329	14627970	Intron of PRKACA(-):984bp after exon 1	Intron of DNAJB1(-):112bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730)  fusion (DNAJB1 exon 1 fused with PRKACA exons 2-10) : c.212-112:DNAJB1_c.46+985:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	400641	NA	0	22	10	22
P-0035570-T01-IM6	SOMATIC	CAMK2A	CD74	5	5	149621581	149783112	Intron of CAMK2A(-):2Kb before exon 14	Intron of CD74(-):237bp before exon 7	GRCh37	DUPLICATION	CAMK2A (NM_015981) -CD74 (NM_001025159) Rearrangement : c.985-2282:CAMK2A_c.626-237:CD74dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CAMK2A:CD74}	161531	NA	0	97	10	103
P-0001768-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42865111	42867239	Intron of TMPRSS2(-):1Kb after exon 3	Intron of TMPRSS2(-):734bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-734_c.349+1172del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2128	NA	0	7	10	9
P-0001768-T02-IM6	SOMATIC	VEGFA	RPS6KC1	6	1	43741921	213285654	Intron of VEGFA(+):156bp before exon 2	Intron of RPS6KC1(+):5Kb before exon 4	GRCh37	TRANSLOCATION	VEGFA (NM_001171623) - RPS6KC1 (NM_012424) rearrangement: t(1;6)(q32.3;p21.1)(chr1:g.213285654::chr6:g.43741921)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	25	10	25
P-0002334-T02-IM6	SOMATIC	PBRM1	PBRM1	3	3	52637641	52717586	Exon 18 of PBRM1(-)	5-UTR of PBRM1(-):136Kb before coding start	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.2675_c.-13+2179del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	79945	NA	0	24	10	29
P-0002334-T02-IM6	SOMATIC	HGF	HGF	7	7	81349971	81353089	Intron of HGF(-):89bp after exon 10	Intron of HGF(-):2Kb after exon 9	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.1271+90_c.1168+2117inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3118	NA	0	25	10	26
P-0010920-T02-IM6	SOMATIC	SETD2	SMARCC1	3	3	47165001	47763909	Exon 3 of SETD2(-)	Intron of SMARCC1(-):2Kb before exon 7	GRCh37	DELETION	SMARCC1 (NM_003074) - SETD2 (NM_014159) rearrangement: c.647-1684:SMARCC1_c.1125:SETD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCC1:SETD2}	598908	NA	0	18	10	18
P-0017173-T01-IM6	SOMATIC	HILPDA	KMT2C	7	7	128102478	151882625	IGR: 7Kb before HILPDA(+)	Intron of KMT2C(-):17bp after exon 34	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: g.128102478_c.5082+18:KMT2Cdel	PRECISE		MANUAL_OK	3to5	-	23780147	NA	NA	2	10	NA
P-0017703-T02-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37593034	38061526	Intron of SLC25A21(-):48Kb after exon 1	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	SLC25A21 (NM_030631) -  FOXA1 (NM_004496) rearrangement: c.70+48452:SLC25A21_c.463:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	468492	NA	0	22	10	23
P-0017703-T02-IM6	SOMATIC	NF1	CCDC57	17	17	29667568	80111407	Exon 47 of NF1(+)	Intron of CCDC57(-):4Kb after exon 14	GRCh37	INVERSION	CCDC57 (NM_198082) - NF1 (NM_001042492) rearrangement: c.2241+4217:CCDC57_c.6967:NF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CCDC57:NF1}	50443839	NA	0	9	10	10
P-0019077-T02-IM6	SOMATIC	DUSP21	KDM6A	X	X	44666338	44894188	IGR: 37Kb before DUSP21(+)	Exon 7 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: chrX:g.44666338_c.577del	PRECISE		MANUAL_OK	3to5	-	227850	NA	1	36	10	35
P-0022114-T01-IM6	SOMATIC	MET	MET	7	7	116396144	116398648	Intron of MET(+):575bp after exon 6	Exon 9 of MET(+)	GRCh37	INVERSION	MET (NM_000245) rearrangement : c.1862+575_c.2238inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2504	NA	0	2	7	2
P-0022744-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36221862	36223458	Intron of KMT2B(+):94bp after exon 26	Exon 28 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5437+94_c.6008inv	PRECISE		MANUAL_OK	5to5	-	1596	NA	0	40	10	48
P-0022746-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41247738	41249220	Intron of BRCA1(-):124bp after exon 9	Intron of BRCA1(-):40bp after exon 8	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.593+41_c.670+125del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1482	NA	0	2	9	2
P-0022781-T01-IM6	SOMATIC	PDZRN4	FGFR2	12	10	41685122	123241997	Intron of PDZRN4(+):97Kb after exon 3	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - PDZRN4 (NM_001164595) rearrangement: t(6;10)(q23.1;q26.1)(chr6:g.130408449::chr10:g.123239680)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:PDZRN4}	0	NA	0	58	10	66
P-0022781-T01-IM6	SOMATIC	CMIP	PLCG2	16	16	81726043	81939054	Intron of CMIP(+):598bp after exon 11	Exon 15 of PLCG2(+)	GRCh37	INVERSION	PLCG2 (NM_002661) rearrangement: c.1409:PLCG2_chr16:g.81726043inv	PRECISE		MANUAL_OK	5to5	-	213011	NA	0	3	10	3
P-0022782-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861233	42874883	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused in-frame with ERG exons 2-10): c.56-4767:TMRPSS2_c.18+9054:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013650	NA	0	46	10	49
P-0023037-T01-IM6	SOMATIC	FANCA	LOC101927459	16	8	89882953	111811259	Exon 1 of FANCA(-)	IGR: 139Kb before LOC101927459(-)	GRCh37	TRANSLOCATION	FANCA (NM_000135) Rearrangement : t(8,16)(q23.2,q24.2)(chr8:g.111811259::chr16:g.89882953)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	38	10	39
P-0023385-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48562072	48593612	5-UTR of SMAD4(+):11Kb before coding start	Intron of SMAD4(+):55bp after exon 10	GRCh37	DUPLICATION	SMAD4 (NM_005359) rearrangement: c.-128+5079_c.1308+55dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	31540	NA	0	4	10	4
P-0024048-T01-IM6	SOMATIC	PAX8	EPC2	2	2	113980396	149285052	Intron of PAX8(-):3Kb before exon 11	IGR: 118Kb before EPC2(+)	GRCh37	DELETION	PAX8 (NM_003466) Rearrangement : c.1190-2641:PAX8_chr2:g.149285052del	PRECISE		MANUAL_OK	3to5	-	35304656	NA	0	40	10	43
P-0024117-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15352916	15354122	Intron of BRD4(-):794bp after exon 14	Exon 14 of BRD4(-)	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.2758_c.3169+795inv	PRECISE		MANUAL_OK	3to3	-	1206	NA	0	2	4	2
P-0024569-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43700086	43709891	Intron of TP53BP1(-):54bp after exon 27	Intron of TP53BP1(-):1Kb before exon 22	GRCh37	DUPLICATION	TP53BP1 (NM_001141980) rearrangement: c.4682-1277_c.5746+55dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	9805	NA	0	15	10	15
P-0024569-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59792422	59793345	Intron of BRIP1(-):889bp after exon 17	Exon 17 of BRIP1(-)	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.2459_c.2492+890del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	923	NA	0	55	10	77
P-0024640-T01-IM6	SOMATIC	GRID1	BMPR1A	10	10	88017504	88683402	Intron of GRID1(-):51Kb before exon 3	Exon 13 of BMPR1A(+)	GRCh37	DELETION	BMPR1A (NM_004329) rearrangement: chr10:g.88017504_c.1525:BMPR1Adel	PRECISE		MANUAL_OK	3to5	-	665898	NA	0	15	10	45
P-0024898-T01-IM6	SOMATIC	TMPRSS2	SLC45A3	21	1	42873896	205610270	Intron of TMPRSS2(-):4Kb before exon 2	IGR: 17Kb before SLC45A3(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement : t(21;1)(q22.3;q32.1)(chr21:42873896::chr1:205610270)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	35	10	35
P-0025437-T02-IM6	SOMATIC	ATRX	BNC2	X	9	76845379	16558821	Exon 27 of ATRX(-)	Intron of BNC2(-):6Kb before exon 5	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement: t(X;9)(p22.3;q21.1)(chrX:g.76845379::chr9:g.16558821)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	15	0	16
P-0028519-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39602482	39613854	Intron of PIK3C3(+):2Kb after exon 13	Exon 16 of PIK3C3(+)	GRCh37	DUPLICATION	PIK3C3 (NM_002647) rearrangement: c.1484+1813_c.1772dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11372	NA	0	50	10	52
P-0029161-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683658	32416136	Intron of EWSR1(+):535bp after exon 8	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:g.32416136::chr22:g.29683658)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	209	10	208
P-0030702-T01-IM6	SOMATIC	TP53	TP53	17	17	7578398	7588483	Exon 5 of TP53(-)	5-UTR of TP53(-):16Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.-29+2212_c.532dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10085	NA	0	62	10	65
P-0032041-T01-IM6	SOMATIC	CDC73	LINC01031	1	1	193202361	193289576	Intron of CDC73(+):77bp after exon 14	5-UTR of LINC01031(+):46Kb before coding start	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.1316+77:CDC73_chr1:g.193289576	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CDC73:LINC01031}	87215	NA	0	57	10	58
P-0032459-T01-IM6	SOMATIC	NAB2	ATXN7L3B	12	12	57487068	74965141	Intron of NAB2(+):90bp after exon 5	IGR: 34Kb before ATXN7L3B(+)	GRCh37	INVERSION	NAB2 (NM_005967) Rearrangement: c.1276+90:NAB2_chr12:g.74965141inv	PRECISE		MANUAL_OK	5to5	-	17478073	NA	0	11	10	13
P-0034038-T01-IM6	SOMATIC	PPP4R2	PPP4R2	3	3	73069549	73096428	Intron of PPP4R2(+):22Kb after exon 2	Exon 3 of PPP4R2(+)	GRCh37	DELETION	PPP4R2 (NM_174907) Rearrangement: c.116+22240_c.208del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	26879	NA	0	31	10	37
P-0035571-T01-IM6	SOMATIC	XRCC2	SHH	7	7	152357811	155601095	Exon 2 of XRCC2(-)	Intron of SHH(-):2Kb before exon 2	GRCh37	INVERSION	XRCC2 (NM_005431) Rearrangement : c.96:XRCC2_c.301-1844:SHHinv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3243284	NA	0	12	10	15
P-0035482-T01-IM6	SOMATIC	PIK3CD	ABCD3	1	1	9770427	94821555	5-UTR of PIK3CD(+):86bp before coding start	IGR: 62Kb before ABCD3(+)	GRCh37	INVERSION	PIK3CD (NM_005026) rearrangement: c.-32-55_chr1:g.94821555inv	PRECISE		MANUAL_OK	5to5	-	85051128	NA	0	24	10	24
P-0035551-T01-IM6	SOMATIC	TERT	LOC101927851	5	1	1295257	235010251	Promoter of TERT(-):42Kb from tx start	IGR: 83Kb before LOC101927851(-)	GRCh37	TRANSLOCATION	TERT (NM_198253) Rearrangement :t(1;5)(q34.2;q31.3)(chr1:g.235010251::chr5:g.1295257)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0035551-T01-IM6	SOMATIC	OSMR	RICTOR	5	5	38859464	38962362	5-UTR of OSMR(+):10Kb before coding start	Intron of RICTOR(-):54bp after exon 19	GRCh37	DELETION	RICTOR (NM_152756) Rearrangement : c.1715+55_c.-13-9670:OSMRdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	102898	NA	0	85	10	88
P-0035643-T01-IM6	SOMATIC	RAD21	SAMD12-AS1	8	8	117862877	119658287	Exon 12 of RAD21(-)	5-UTR of SAMD12-AS1(+):80Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.1600_chr8:g.119658287del	PRECISE		MANUAL_OK	3to5	-	1795410	NA	0	22	10	22
P-0035703-T01-IM6	SOMATIC	TMPRSS2	LOC100129027	21	21	42876551	47115171	Intron of TMPRSS2(-):3Kb after exon 1	IGR: 133Kb before LOC100129027(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+3326_chr21:g.47115171del	PRECISE		MANUAL_OK	3to5	-	4238620	NA	0	51	10	53
P-0035710-T01-IM6	SOMATIC	MIR548AI	PRKD1	14	14	29876388	30194791	IGR: 20Kb before MIR548AI(-)	Exon 2 of PRKD1(-)	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: chr14:g.29876388_c.354del	PRECISE		MANUAL_OK	3to5	-	318403	NA	0	16	10	16
P-0035712-T01-IM6	SOMATIC	ALK	H6PD	2	1	29462508	9314150	Intron of ALK(-):37bp after exon 13	Intron of H6PD(+):7Kb after exon 3	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(1;2)(p36.22;p23.2)(chr1:g.9314150::chr2:g.29462508)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	43	10	43
P-0035736-T01-IM6	SOMATIC	TP53	TP53	17	17	7578312	7579607	Intron of TP53(-):23bp before exon 6	Intron of TP53(-):17bp before exon 4	GRCh37	DELETION	TP53 (NM_000546) Rearrangement : c.97-17_c.560-23del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1295	NA	0	24	10	29
P-0001776-T02-IM6	SOMATIC	NOTCH4	FKBP5	6	6	32164057	35551247	Intron of NOTCH4(-):43bp after exon 29	Intron of FKBP5(-):3Kb before exon 9	GRCh37	INVERSION	NOTCH4 (NM_004557)  - FKBP5 (NM_004117) rearrangement: c.5298+44:NOTCH4_c.841-3249:FKBP5inv	PRECISE		MANUAL_OK	3to3	-	3387190	NA	0	9	10	9
P-0032171-T01-IM6	SOMATIC	OPTN	FGFR2	10	10	13156724	123239789	Intron of OPTN(+):2Kb before exon 5	Intron of FGFR2(-):254bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - OPTN (NM_021980) rearrangement: c.2302-254:FGFR2_c.553-1543:OPTNinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:OPTN}	110083065	NA	0	12	10	18
P-0032313-T02-IM6	SOMATIC	ROS1	DCBLD1	6	6	117643817	117885282	Intron of ROS1(-):1Kb before exon 35	Intron of DCBLD1(+):6Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) Rearrangement: c.5642-1260:ROS1_chr6:g.117885282del	PRECISE		MANUAL_OK	3to5	-	241465	NA	0	10	10	11
P-0035393-T02-IM6	SOMATIC	MKRN1	BRAF	7	7	140157974	140488436	Intron of MKRN1(-):832bp after exon 4	Intron of BRAF(-):1Kb before exon 9	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) fusion: c.771+833:MKRN1_c.1141-1052:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MKRN1:BRAF}	330462	NA	0	67	10	72
P-0035631-T01-IM6	SOMATIC	MXRA7	SRSF2	17	17	74655996	74732328	IGR: 16Kb before MXRA7(-)	Exon 2 of SRSF2(-)	GRCh37	DUPLICATION	SRSF2 (NM_003016) rearrangement: chr17:g.74655996_c.581dup	PRECISE		MANUAL_OK	5to3	-	76332	NA	0	29	10	29
P-0035632-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44853648	44918214	Intron of KDM6A(+):17Kb before exon 5	Intron of KDM6A(+):36bp before exon 11	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.385-16558_c.876-37del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	64566	NA	0	26	10	32
P-0035646-T01-IM6	SOMATIC	TTC28	EWSR1	22	22	28972028	29684574	Intron of TTC28(-):54Kb after exon 2	Intron of EWSR1(+):20bp before exon 9	GRCh37	DELETION	TTC28 (NM_001145418) - EWSR1 (NM_013986) rearrangement: c.381+53512:TTC28_c.812-21:EWSR1del	IMPPRECISE		MANUAL_OK	3to5	-	712546	NA	0	86	0	980
P-0035660-T01-IM6	SOMATIC	EP300	TMEM241	22	18	41542930	20871289	Intron of EP300(+):110bp after exon 11	IGR: 5Kb before TMEM241(-)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(18;22)(q11.2;q13.2)(chr18:g.20871289::chr22:g.41542930)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	10
P-0035720-T01-IM6	SOMATIC	APC	FTMT	5	5	112090674	121241258	Exon 2 of APC(+)	IGR: 54Kb before FTMT(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.87:APC_chr5:g.121241258inv	PRECISE		MANUAL_OK	3to3	-	9150584	NA	0	23	10	23
P-0035723-T01-IM6	SOMATIC	RTEL1	YBX2	20	17	62292480	7193375	Intron of RTEL1(+):170bp before exon 3	Exon 6 of YBX2(-)	GRCh37	TRANSLOCATION	YBX2 (NM_015982) - RTEL1 (NM_032957) rearrangement: t(17;20)(p13.1;q13.33)(chr17:g.7193375::chr20:g.62292480)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {YBX2:RTEL1}	0	NA	0	8	10	7
P-0035764-T01-IM6	SOMATIC	RTEL1	ZGPAT	20	20	62321528	62356299	Exon 25 of RTEL1(+)	Intron of ZGPAT(+):8Kb before exon 3	GRCh37	DUPLICATION	ZGPAT (NM_032527) - RTEL1 (NM_032957) rearrangement: c.585-8272:ZGPAT_c.2302:RTEL1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZGPAT:RTEL1}	34771	NA	0	5	0	5
P-0035772-T01-IM6	SOMATIC	STAT3	KANSL1	17	17	40497343	44240986	Intron of STAT3(-):233bp after exon 4	Intron of KANSL1(-):7Kb after exon 3	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.372+234:STAT3_chr17:g.44240986inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	3743643	NA	0	8	0	8
P-0035786-T01-IM6	SOMATIC	HIST1H3G	HIST1H4H	6	6	26271442	26309900	Exon 1 of HIST1H3G(-)	IGR: 25Kb before HIST1H4H(-)	GRCh37	DELETION	HIST1H3G (NM_003534) rearrangement: c.171:HIST1H3G_chr6:g.26309900del	PRECISE		MANUAL_OK	3to5	-	38458	NA	0	38	10	39
P-0035788-T01-IM6	SOMATIC	CARM1	SOX5	19	12	11032250	23564653	Intron of CARM1(+):40bp before exon 16	IGR: 121Kb before SOX5(-)	GRCh37	TRANSLOCATION	CARM1 (NM_199141) Rearrangement: t(12;19)(p12.1;p13.2)(chr12:g.23564653::chr19:g.11032250)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	16	10	15
P-0035793-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883595	37884870	Exon 26 of ERBB2(+)	3-UTR of ERBB2(+):28Kb after coding stop	GRCh37	DELETION	ERBB2 (NM_004448) Rearrangement: c.3207_c.*573del	PRECISE		MANUAL_OK	3to5	-	1275	NA	0	15	10	17
P-0035868-T01-IM6	SOMATIC	ROS1	DCBLD1	6	6	117644455	117887080	Intron of ROS1(-):1Kb after exon 34	Intron of DCBLD1(+):4Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5641+1040:ROS1_chr6:g.117887080del	PRECISE		MANUAL_OK	3to5	-	242625	NA	0	72	10	77
P-0013032-T02-IM6	SOMATIC	LINC01479	SETD2	12	3	68312811	47084233	IGR: 10Kb before LINC01479(+)	Intron of SETD2(-):43bp before exon 17	GRCh37	TRANSLOCATION	SETD2 (NM_014159) Rearrangement : t(3,12)(p21.31,q14.3)(chr3:g.47084233::chr12:g.68312811)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	33	10	33
P-0021593-T02-IM6	SOMATIC	GPS2	TIMELESS	17	12	7217737	56839397	Intron of GPS2(-):15bp before exon 4	5-UTR of TIMELESS(-):28Kb before coding start	GRCh37	TRANSLOCATION	GPS2 (NM_004489) rearrangement: t(12;17)(q13.3;p13.1)(chr12:g.56839397::chr17:g.7217737)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	21
P-0021593-T02-IM6	SOMATIC	GPS2	ZNF624	17	17	7217842	16492603	Exon 3 of GPS2(-)	IGR: 31Kb before ZNF624(-)	GRCh37	INVERSION	GPS2 (NM_004489) rearrangement: c.169_g.16492603inv	PRECISE		MANUAL_OK	5to5	-	9274761	NA	0	16	10	19
P-0028467-T03-IM6	SOMATIC	INPPL1	LPGAT1	11	1	71939778	211891414	Exon 4 of INPPL1(+)	IGR: 25Kb before LPGAT1(-)	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) Rearrangement: t(1;11)(q32.2;q13.4)(chr1:g.211891414::chr11:g.71939778)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	48	10	47
P-0028467-T03-IM6	SOMATIC	PTPRD	BMP2K	9	4	8340800	79816886	Intron of PTPRD(-):289bp after exon 41	Intron of BMP2K(+):8Kb after exon 15	GRCh37	TRANSLOCATION	BMP2K (NM_198892) - PTPRD (NM_002839) Rearrangement: t(4;9)(q21.22;p24.1)(chr4:g.79816886::chr9:g.8340800)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {BMP2K:PTPRD}	0	NA	0	15	10	10
P-0035847-T01-IM6	SOMATIC	CECR2	FANCA	22	16	17998739	89805297	Intron of CECR2(+):4Kb before exon 8	Exon 42 of FANCA(-)	GRCh37	TRANSLOCATION	CECR2 (NM_031413) - FANCA (NM_000135) rearrangement: t(16;22)(q24.3;q11.21)(chr16:g.89805297::chr22:g.17998739)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CECR2:FANCA}	0	NA	0	18	0	18
P-0035854-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39936233	42869513	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):532bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+533:TMPRSS2_c.39+11353:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2933280	NA	0	71	10	168
P-0035867-T01-IM6	SOMATIC	APC	APC	5	5	112175796	112181350	Exon 16 of APC(+)	3-UTR of APC(+):91Kb after coding stop	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4505:APC_chr5:g.112181350del	PRECISE		MANUAL_OK	3to5	-	5554	NA	0	19	10	20
P-0002372-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878470	42872815	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2699:TMPRSS2_c.40-60926:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994345	NA	0	75	10	82
P-0029892-T05-IM6	SOMATIC	NTRK1	PLEKHA6	1	1	156844239	204214638	Intron of NTRK1(+):47bp after exon 9	Intron of PLEKHA6(-):104bp after exon 14	GRCh37	INVERSION	PLEKHA6 (NM_014935) - NTRK1 (NM_002529) fusion: c.2032+105:PLEKHA6_c.1195+47:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PLEKHA6:NTRK1}	47370399	NA	0	180	10	208
P-0029892-T05-IM6	SOMATIC	PTEN	PTEN	10	10	89711910	89723898	Exon 6 of PTEN(+)	Intron of PTEN(+):1Kb before exon 9	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.528_c.1027-1146dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11988	NA	0	109	10	123
P-0035090-T02-IM6	SOMATIC	LRRC63	RB1	13	13	46853294	49037862	Promoter of LRRC63(+):67Kb from tx start	Intron of RB1(+):4bp before exon 21	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.2107-5_chr13:g.46853294inv	PRECISE		MANUAL_OK	5to5	-	2184568	NA	0	59	10	61
P-0035767-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88505787	12029143	Intron of NTRK3(-):22Kb before exon 15	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12029143::chr15:g.88505787)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	79	10	77
P-0035768-T01-IM6	SOMATIC	KMT2D	DUSP22	12	6	49432543	238826	Exon 34 of KMT2D(-)	IGR: 53Kb before DUSP22(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(6;12)(p25.3;q13.12)(chr6:g.238826::chr12:g.49432543)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	5	0	5
P-0035779-T01-IM6	SOMATIC	ZNF778	ANKRD11	16	16	89305879	89337294	IGR: 22Kb before ZNF778(+)	Exon 12 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.7737:ANKRD11_chr16:g.89305879del	PRECISE		MANUAL_OK	3to5	-	31415	NA	0	5	10	5
P-0035779-T01-IM6	SOMATIC	ATRX	MIR4328	X	X	76855957	78159921	Exon 23 of ATRX(-)	IGR: 3Kb before MIR4328(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.5643:ATRX_chrX:g.78159921inv	PRECISE		MANUAL_OK	5to5	-	1303964	NA	0	9	10	10
P-0035812-T01-IM6	SOMATIC	DROSHA	ADAMTS12	5	5	31472068	33530930	Intron of DROSHA(-):101bp after exon 16	Intron of ADAMTS12(-):3Kb before exon 24	GRCh37	DUPLICATION	DROSHA (NM_013235) - ADAMTS12 (NM_030955) Rearrangement : c.2241+102:DROSHA_c.4607-3459_ADAMTS12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DROSHA:ADAMTS12}	2058862	NA	0	21	10	21
P-0035812-T01-IM6	SOMATIC	NSD1	PRELID1	5	5	176637620	176733423	Exon 5 of NSD1(+)	Exon 5 of PRELID1(+)	GRCh37	DUPLICATION	PRELID1 (NM_013237) - NSD1 (NM_022455)  Rearrangement :  c.512:PRELID1_c.2220:NSD1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PRELID1:NSD1}	95803	NA	0	8	9	8
P-0035812-T01-IM6	SOMATIC	TSC1	GBGT1	9	9	135776967	136029866	Intron of TSC1(-):8bp after exon 19	Intron of GBGT1(-):218bp before exon 6	GRCh37	DUPLICATION	TSC1 (NM_000368) - GBGT1 (NM_021996) Rearrangement : c.2502+9:TSC1_c.360-218:GBGT1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TSC1:GBGT1}	252899	NA	0	21	0	21
P-0035814-T01-IM6	SOMATIC	FLJ45079	INPPL1	17	11	75802681	71943225	IGR: 72Kb before FLJ45079(-)	Intron of INPPL1(+):58bp before exon 14	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) Rearrangement : t(11,17)(q13.4,q25.3)(chr11:g.71943225::chr17:g.75802681)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0035818-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39833350	42867727	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.127-1222:TMPRSS2_c.19-15806:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3034377	NA	0	29	0	31
P-0035920-T01-IM6	SOMATIC	CPSF1	RECQL4	8	8	145626035	145737616	Intron of CPSF1(-):29bp after exon 7	Exon 19 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) - CPSF1 (NM_013291) rearrangement: c.3148:RECQL4_c.686+30:CPSF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RECQL4:CPSF1}	111581	NA	0	54	10	56
P-0035925-T01-IM6	SOMATIC	AP1M1	TEK	19	9	16353772	27185625	IGR: 45Kb before AP1M1(+)	Exon 9 of TEK(+)	GRCh37	TRANSLOCATION	TEK (NM_000459) rearrangement: t(9;19)(p21.2;p13.11)(chr9:g.27185625::chr19:g.16353772)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	102	10	114
P-0035926-T01-IM6	SOMATIC	EGFR	LOC650226	7	7	55268790	56436684	Intron of EGFR(+):90bp before exon 25	IGR: 55Kb before LOC650226(-)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2947-91_chr7:g.56436684inv	PRECISE		MANUAL_OK	3to3	-	1167894	NA	0	6	10	7
P-0035965-T01-IM6	SOMATIC	TNFRSF14	GPX7	1	1	2493299	53064323	Intron of TNFRSF14(+):45bp after exon 6	IGR: 4Kb before GPX7(+)	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.694+45:TNFRSF14_chr1:g.53064323inv	PRECISE		MANUAL_OK	3to3	-	50571024	NA	0	33	10	33
P-0035965-T01-IM6	SOMATIC	SESN2	RWDD3	1	1	28600160	95817451	Intron of SESN2(+):141bp after exon 6	IGR: 118Kb before RWDD3(+)	GRCh37	INVERSION	SESN2 (NM_031459) rearrangement: c.901+141:SESN2_chr1:g.95817451inv	PRECISE		MANUAL_OK	3to3	-	67217291	NA	0	7	10	7
P-0035968-T01-IM6	SOMATIC	GBE1	GATA2	3	3	83072174	128200784	IGR: 2Mb before GBE1(-)	Exon 5 of GATA2(-)	GRCh37	DUPLICATION	GATA2 (NM_032638) rearrangement: c.1021_chr3:g.83072174dup	PRECISE		MANUAL_OK	5to3	-	45128610	NA	0	41	10	41
P-0035763-T01-IM6	SOMATIC	EWSR1	NR4A3	22	9	29693507	102589997	Intron of EWSR1(+):309bp before exon 14	Intron of NR4A3(+):325bp before exon 4	GRCh37	TRANSLOCATION	NR4A3 (NM_006981) - EWSR1 (NM_013986) fusion: t(9;22)(q31.1;q12.2)(chr9:g.102589997::chr22:g.29693507)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NR4A3:EWSR1}	0	NA	0	9	10	8
P-0035765-T01-IM6	SOMATIC	BRCA2	VCAN	13	5	32918847	82844662	Intron of BRCA2(+):57bp after exon 12	Intron of VCAN(+):759bp after exon 10	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) - VCAN (NM_004385) rearrangement: t(5;13)(q14.3;q13.1)(chr5:g.82844662::chr13:g.32918847)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {BRCA2:VCAN}	0	NA	0	7	0	7
P-0023310-T02-IM6	SOMATIC	RASA1	KIAA0825	5	5	86685302	93855388	Exon 24 of RASA1(+)	Intron of KIAA0825(-):564bp after exon 5	GRCh37	INVERSION	RASA1 (NM_002890) - KIAA0825 (NM_001145678) rearrangement: c.3018:RASA1_c.970+565:KIAA0825inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RASA1:KIAA0825}	7170086	NA	0	63	10	64
P-0032859-T02-IM6	SOMATIC	PMS1	PMS1	2	2	190732652	190738219	Exon 11 of PMS1(+)	Intron of PMS1(+):2bp before exon 12	GRCh37	DELETION	PMS1 (NM_000534) rearrangement: c.2470_c.2474-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5567	NA	0	16	10	17
P-0032859-T02-IM6	SOMATIC	PMS1	PMS1	2	2	190738380	190741996	Exon 12 of PMS1(+)	Intron of PMS1(+):1bp before exon 13	GRCh37	DELETION	PMS1 (NM_000534) rearrangement: c.2632_c.2635-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3616	NA	0	21	10	23
P-0036007-T01-IM6	SOMATIC	TET1	CAMTA1	10	1	70332966	7345224	Exon 2 of TET1(+)	Intron of CAMTA1(+):36Kb after exon 5	GRCh37	TRANSLOCATION	TET1 (NM_030625) - CAMTA1 (NM_015215) Rearrangment: c.871:TET1_c.438+35538:CAMTA1	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TET1:CAMTA1}	0	NA	0	64	10	66
P-0036007-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859465	42874243	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon 1 with ERG exon 2) : c.56-4127:TMPRSS2_c.18+10822:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3014778	NA	0	113	10	115
P-0036009-T01-IM6	SOMATIC	PTPN11	GRID2	12	4	112926914	93691193	Exon 13 of PTPN11(+)	Intron of GRID2(+):180Kb after exon 2	GRCh37	TRANSLOCATION	PTPN11 (NM_002834) Rearrangement: t(4,12)(q21.13,q24.12)(chr4:g.93691193::chr12:g.112926914)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	41	10	47
P-0036009-T01-IM6	SOMATIC	CDK12	SNX16	17	8	37673753	83375277	Exon 10 of CDK12(+)	IGR: 663Kb before SNX16(-)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) Rearrangement :  t(8,17)(p13.3,q24.12)(chr8:g.83375277::chr17:g.37673753)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	8	0	8
P-0036009-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36164899	36168051	Exon 9 of RUNX1(-)	Intron of RUNX1(-):3Kb before exon 9	GRCh37	DELETION	RUNX1 (NM_001754) Rearrangement : c.968-3144_c.976del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3152	NA	0	143	10	144
P-0036010-T01-IM6	SOMATIC	CD79A	ZNF83	19	19	42383219	53184525	Exon 2 of CD79A(+)	5-UTR of ZNF83(-):68Kb before coding start	GRCh37	INVERSION	CD79A (NM_001783) - ZNF83 (NM_018300) Rearrangement : c.239:CD79A_c.-658+9171:ZNF83inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ZNF83:CD79A}	10801306	NA	0	10	0	10
P-0036010-T01-IM6	SOMATIC	CIC	VRK3	19	19	42793094	50526308	Exon 7 of CIC(+)	5-UTR of VRK3(-):44Kb before coding start	GRCh37	INVERSION	CIC (NM_015125) - VRK3 (NM_016440) Rearrangement : c.986:CIC_c.-65+2216:VRK3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:VRK3}	7733214	NA	0	28	10	27
P-0036011-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52623118	52633309	Exon 19 of PBRM1(-)	Intron of PBRM1(-):4Kb after exon 18	GRCh37	DELETION	PBRM1 (NM_018313) Rearrangement : c.2779+4228_c.2933del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10191	NA	0	22	10	22
P-0036015-T01-IM6	SOMATIC	BLM	BLM	15	15	91293628	91333800	Intron of BLM(+):331bp after exon 3	Intron of BLM(+):78bp before exon 15	GRCh37	DELETION	BLM (NM_000057) Rearrangement : c.799+331_c.2824-79del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : out of frame	40172	NA	0	10	10	10
P-0036015-T01-IM6	SOMATIC	NF1	NF1	17	17	29677403	29684519	Intron of NF1(+):67bp after exon 50	Intron of NF1(+):132bp after exon 54	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement : c.7457+67_c.7970+132dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	7116	NA	0	31	10	32
P-0036015-T01-IM6	SOMATIC	EPAS1	MSH2	2	2	46568095	47702074	Intron of EPAS1(+):6Kb before exon 2	Intron of MSH2(+):89bp before exon 12	GRCh37	DELETION	EPAS1 (NM_001430) - MSH2 (NM_000251) Rearrangement : c.27-5917:EPAS1_c.1760-90:MSH2	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EPAS1:MSH2}	1133979	NA	0	16	10	16
P-0036020-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5064959	5121042	Exon 9 of JAK2(+)	Intron of JAK2(+):2Kb before exon 23	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.1133_c.3060-1962del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	56083	NA	0	36	10	35
P-0036025-T01-IM6	SOMATIC	KMT2A	CBL	11	11	118350227	119148526	Intron of KMT2A(+):661bp before exon 6	Exon 7 of CBL(+)	GRCh37	DUPLICATION	CBL (NM_005188) - KMT2A (NM_001197104) rearrangement: c.1067:CBL_c.3570-662:KMT2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CBL:KMT2A}	798299	NA	0	24	10	26
P-0036025-T01-IM6	SOMATIC	ATP1A3	CIC	19	19	42489665	42792080	Intron of ATP1A3(-):90bp before exon 7	Exon 6 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) - ATP1A3 (NM_152296) rearrangement: c.884:CIC_c.607-90:ATP1A3dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	302415	NA	0	7	10	7
P-0036028-T01-IM6	SOMATIC	NUMA1	EGFR	11	7	71728415	55241128	Intron of NUMA1(-):317bp after exon 13	Intron of EGFR(+):311bp after exon 17	GRCh37	TRANSLOCATION	NUMA1 (NM_006185) - EGFR (NM_005228) rearrangement: t(7;11)(p11.2;q13.4)(chr7:g.55241128::chr11:g.71728415)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {NUMA1:EGFR}	0	NA	0	65	10	82
P-0036031-T01-IM6	SOMATIC	PTPRS	CROCC	19	1	5215170	17223127	Intron of PTPRS(-):129bp after exon 28	IGR: 25Kb before CROCC(+)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(1;19)(p36.13;p13.3)(chr1:g.17223127::chr19:g.5215170)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	14
P-0036034-T01-IM6	SOMATIC	PPP1R13B	AKT1	14	14	104302646	105258980	Intron of PPP1R13B(-):11Kb after exon 1	Exon 2 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) - PPP1R13B (NM_015316) rearrangement: c.1:AKT1_c.9+10990: PPP1R13Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AKT1:PPP1R13B}	956334	NA	0	12	10	21
P-0036003-T01-IM6	SOMATIC	CIC	LIPE-AS1	19	19	42796454	43041838	Exon 13 of CIC(+)	5-UTR of LIPE-AS1(+):115Kb before coding start	GRCh37	INVERSION	CIC (NM_015125) Rearrangement: c.3011:CIC_chr19:g.43041838inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	245384	NA	0	46	0	43
P-0036026-T01-IM6	SOMATIC	MS4A2	KMT2A	11	11	59894842	118375689	IGR: 39Kb before MS4A2(+)	Exon 27 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: chr11:g.59894842_c.9082del	PRECISE		MANUAL_OK	3to5	-	58480847	NA	0	49	10	144
P-0036054-T01-IM6	SOMATIC	NOTCH3	KIRREL2	19	19	15285085	36346742	Exon 25 of NOTCH3(-)	Promoter of KIRREL2(+):1Kb from tx start	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.4530_chr19:g.36346742inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KIRREL2:NOTCH3}	21061657	NA	0	10	10	10
P-0036054-T01-IM6	SOMATIC	DEDD2	CIC	19	19	42723011	42794318	3-UTR of DEDD2(-):1Kb after coding stop	Intron of CIC(+):66bp before exon 10	GRCh37	INVERSION	CIC (NM_015125) - DEDD2 (NM_133328) rearrangement: c.1465-67:CIC_c.-1266:DEDD2inv	IMPPRECISE		MANUAL_OK	5to5	-	71307	NA	0	16	0	18
P-0036059-T01-IM6	SOMATIC	EZH1	WNT3	17	17	40858062	44892418	Exon 16 of EZH1(-)	Intron of WNT3(-):3Kb after exon 1	GRCh37	DUPLICATION	EZH1 (NM_001991) - WNT3 (NM_030753) rearrangement: c.1802:EZH1_c.80+3466:WNT3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EZH1:WNT3}	4034356	NA	0	25	0	25
P-0036062-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27057923	27087977	Exon 3 of ARID1A(+)	Intron of ARID1A(+):13bp after exon 6	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1631_c.2251+13del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	30054	NA	0	35	10	33
P-0036106-T01-IM6	SOMATIC	ALK	EML4	2	2	29446930	42526326	Intron of ALK(-):536bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) -ALK (NM_004304) fusion (EML4 exons 1-13 fused to ALK exons 20-29): c.1490-2055:EML4_c.3173-536:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079396	NA	0	80	10	79
P-0036109-T01-IM6	SOMATIC	CTCF	CTCF	16	16	67645070	67660203	Exon 3 of CTCF(+)	Intron of CTCF(+):254bp before exon 8	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.335_c.1358-255dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15133	NA	0	64	10	65
P-0011098-T02-IM6	SOMATIC	MMP16	SPEN	8	1	89816597	16259712	IGR: 767Kb before MMP16(-)	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;8)(p36.13;q21.3)(chr1:g.16259712::chr8:g.89816597)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	56	10	55
P-0031178-T02-IM6	SOMATIC	CDH1	MIR5093	16	16	68842101	85385815	Intron of CDH1(+):225bp before exon 4	IGR: 46Kb before MIR5093(-)	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.388-226_chr16:g.85385815del	PRECISE		MANUAL_OK	5to5	-	16543714	NA	0	10	10	10
P-0031178-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39859211	42874466	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.56-4350:TMPRSS2_c.18+11076:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015255	NA	0	157	10	165
P-0036120-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39830796	42868693	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918)  fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+1353:TMPRSS2_c.19-13252:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3037897	NA	0	50	10	61
P-0036127-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883189	37885595	Exon 25 of ERBB2(+)	Promoter of ERBB2(+):29Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3092_c.*1298del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2406	NA	0	37	10	39
P-0022306-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187555378	187557342	Intron of FAT1(-):401bp before exon 7	Exon 6 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.4020_c.4184-401del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1964	NA	0	53	10	56
P-0027456-T02-IM6	SOMATIC	MSI2	MSI2	17	17	55334994	55360210	Intron of MSI2(+):86bp after exon 3	Intron of MSI2(+):21Kb after exon 5	GRCh37	DELETION	MSI2 (NM_138962) rearrangement: c.185+86_c.312+20657del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	25216	NA	0	38	0	41
P-0027456-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41273588	41277250	Intron of CTNNB1(+):1Kb before exon 8	Exon 11 of CTNNB1(+)	GRCh37	DUPLICATION	CTNNB1 (NM_001904) rearrangement: c.1082-1244_c.1719dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3662	NA	0	52	10	53
P-0027456-T02-IM6	SOMATIC	POTEA	MSH6	8	2	43096565	48030831	IGR: 51Kb before POTEA(+)	Intron of MSH6(+):7bp after exon 5	GRCh37	TRANSLOCATION	MSH6 (NM_000179) rearrangement: t(2;8)(p16.3;p11.21)(chr2:g.48030834::chr8:g.43096828)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	7	0	7
P-0035844-T01-IM6	SOMATIC	MAP3K13	MASP1	3	3	185161302	187005422	Exon 4 of MAP3K13(+)	Intron of MASP1(-):2Kb before exon 2	GRCh37	INVERSION	MAP3K13 (NM_004721) - MASP1 (NM_139125) Rearrangement : c.729:MAP3K1_c.6-1578:MASP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MAP3K13:MASP1}	1844120	NA	0	3	6	3
P-0036036-T02-IM6	SOMATIC	ULK4	SETD2	3	3	41687819	47098403	Intron of ULK4(-):17Kb after exon 30	Exon 15 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) - ULK4 (NM_017886) fusion: c.6871:SETD2_c.3071+17279:ULK4del.	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SETD2:ULK4}	5410584	NA	0	16	10	21
P-0036224-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89341748	89368128	Intron of ANKRD11(-):149bp before exon 10	Intron of ANKRD11(-):3Kb after exon 4	GRCh37	DELETION	ANKRD11 (NM_013275) Rearrangement: c.226+3486_c.7471-149del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	26380	NA	0	12	10	14
P-0036224-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397656	139422952	Exon 27 of NOTCH1(-)	Intron of NOTCH1(-):5Kb before exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) Rearrangement: c.141-4521_c.5145del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25296	NA	0	74	10	80
P-0036261-T01-IM6	SOMATIC	PIK3R1	SLC30A5	5	5	67591123	68233907	Exon 13 of PIK3R1(+)	IGR: 156Kb before SLC30A5(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1716_chr5:g.5:68233907del	PRECISE		MANUAL_OK	3to5	-	642784	NA	0	12	10	14
P-0036265-T01-IM6	SOMATIC	ROS1	DCBLD1	6	6	117644742	117886239	Intron of ROS1(-):752bp after exon 34	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-8 fused to ROS1 exons 34-43): c.1259-1692:GOPC_c.5641+753:ROS1del	PRECISE		MANUAL_OK	3to5	-	241497	NA	0	40	10	44
P-0036266-T01-IM6	SOMATIC	NOL4	ETV6	18	12	31639519	12015004	Intron of NOL4(-):34Kb after exon 5	Intron of ETV6(+):7Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NOL4 (NM_003787) rearrangement: t(12;18)(p13.2;q12.1)(chr12:g.12015004::chr18:g.:31639519)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	26	10	27
P-0036276-T01-IM6	SOMATIC	BRD4	LINC00664	19	19	15349449	21676464	Intron of BRD4(-):104bp after exon 19	5-UTR of LINC00664(+):10Kb before coding start	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.4020+105_chr19:g.21676464inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC00664:BRD4}	6327015	NA	0	27	10	29
P-0036282-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11955016	12023941	Intron of ETV6(+):37Kb before exon 3	Intron of ETV6(+):1Kb after exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.164-37058_c.1009+1038del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	68925	NA	0	27	0	27
P-0036285-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268116	55272838	Intron of EGFR(+):10bp after exon 24	Intron of EGFR(+):110bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+10_c.3272-111del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4722	NA	0	10	10	10
P-0036315-T01-IM6	SOMATIC	SOD1	NOTCH3	21	19	32944131	15299322	IGR: 88Kb before SOD1(+)	Intron of NOTCH3(-):163bp before exon 9	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(19;21)(p13.12;q22.11)(chr19:g.15299322::chr21:g.32944131)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0036321-T01-IM6	SOMATIC	BRCA1	SORCS2	17	4	41228481	7544612	Intron of BRCA1(-):23bp after exon 13	Intron of SORCS2(+):11Kb after exon 3	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(4;17)(p16.1;q21.31)(chr4:g.7544612::chr17:g.41228481)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	20	10	20
P-0036321-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36181436	36259283	Intron of RUNX1(-):10Kb before exon 8	Exon 4 of RUNX1(-)	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.208_c.806-9677dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	77847	NA	0	114	10	126
P-0036321-T01-IM6	SOMATIC	RAF1	SATB1	3	3	12645727	18405054	Exon 7 of RAF1(-)	Intron of SATB1(-):11Kb before exon 10	GRCh37	DUPLICATION	RAF1 (NM_002880) - SATB1 (NM_001131010) rearrangement: c.742:RAF1_c.1576-11367:SATB1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAF1:SATB1}	5759327	NA	0	8	10	8
P-0031911-T02-IM6	SOMATIC	PPP1R9A	MET	7	7	94865834	116422185	Intron of PPP1R9A(+):10Kb after exon 6	Intron of MET(+):34bp after exon 18	GRCh37	DUPLICATION	MET (NM_000245) - PPP1R9A (NM_001166161) rearrangement: c.3632+34:MET_c.2046+10406:PPP1R9Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MET:PPP1R9A}	21556351	NA	0	5	9	5
P-0036303-T01-IM6	SOMATIC	BAP1	LOC100505920	3	3	52439959	193948044	Intron of BAP1(-):31bp before exon 10	3-UTR of LOC100505920(-):20Kb after coding stop	GRCh37	INVERSION	BAP1 (NM_004656) Rearrangement : c.784-31:BAP1_chr3:g.193948044inv	PRECISE		MANUAL_OK	3to3	-	141508085	NA	0	42	10	61
P-0036305-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1725566	1808902	Exon 3 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 - (NM_000142) TACC3 (NM_006342) Fusion (FGFR3 exon18 fused with TACC3 exon3) : c.2334:FGFR3_c.274:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	83336	NA	0	135	10	150
P-0036312-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62309648	62322691	Exon 12 of RTEL1(+)	Intron of RTEL1(+):391bp after exon 27	GRCh37	DELETION	RTEL1 (NM_032957) Rearrangement  : c.986:_c.2628+391del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13043	NA	0	29	10	30
P-0031395-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15295934	15300073	Intron of NOTCH3(-):104bp before exon 15	Intron of NOTCH3(-):10bp after exon 7	GRCh37	INVERSION	NOTCH3 (NM_000435) Rearrangement : c.1192+11_c.2297-104inv	PRECISE		MANUAL_OK	3to3	-	4139	NA	0	41	10	40
P-0036100-T02-IM6	SOMATIC	NTRK1	NTRK1	1	1	156827324	156843756	Intron of NTRK1(+):7Kb before exon 3	Intron of NTRK1(+):5bp after exon 8	GRCh37	DUPLICATION	NTRK1 (NM_002529) Rearrangement : c.-3403_c.1177+5dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	16432	NA	0	23	10	24
P-0036161-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55208501	55222820	Intron of EGFR(+):1Kb before exon 2	Intron of EGFR(+):702bp before exon 8	GRCh37	DELETION	EGFR vIII (NM_005228) rearrangement: c.89-1478_c.890-703del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	14319	NA	0	25	10	31
P-0036164-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39955445	42872252	3-UTR of ERG(-):78Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.-48+1323:ERG_c.56-2136:TMPRSS2del	PRECISE		MANUAL_OK	3to5	-	2916807	NA	0	75	10	79
P-0036170-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12859423	12874187	IGR: 11Kb before CDKN1B(+)	3-UTR of CDKN1B(+):3Kb after coding stop	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.*226:CDKN1B_chr12:g.12859423del	PRECISE		MANUAL_OK	3to5	-	14764	NA	0	49	10	49
P-0036170-T01-IM6	SOMATIC	PIAS2	TP53BP1	18	15	44342571	43738717	IGR: 47Kb before PIAS2(-)	Exon 14 of TP53BP1(-)	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) rearrangement: t(15;18)(q15.3;q21.1)(chr15:g.43738717::chr18:g.44342571)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	8	6
P-0036176-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856076	42873939	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3823:TMPRSS2_c.18+14211:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3017863	NA	0	53	10	57
P-0036178-T01-IM6	SOMATIC	MDC1	TUBB	6	6	30675509	30692385	Exon 8 of MDC1(-)	3-UTR of TUBB(+):3Kb after coding stop	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.2847:MDC1_chr6:g.30692385del	PRECISE		MANUAL_OK	3to5	-	16876	NA	0	11	10	11
P-0036181-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	145736529	145738856	Promoter of RECQL4(-):137bp from tx start	Exon 14 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.2209:RECQL4_chr8:g.145736529del	PRECISE		MANUAL_OK	3to3	-	2327	NA	0	209	10	209
P-0036181-T01-IM6	SOMATIC	HCFC1	ETV6	X	12	153221893	11905367	Intron of HCFC1(-):31bp before exon 16	Intron of ETV6(+):16bp before exon 2	GRCh37	TRANSLOCATION	HCFC1 (NM_005334) - ETV6 (NM_0019870) rearrangement: t(X;12)(q28;p13.2)(chrX:g.153221893::chr12:g.11905367)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {HCFC1:ETV6}	0	NA	0	48	0	53
P-0036328-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180049889	180061769	Intron of FLT4(-):50bp before exon 12	Intron of FLT4(-):3Kb before exon 2	GRCh37	INVERSION	FLT4 (NM_182925) Rearrangement : c.59-2991_c.1549-50del	PRECISE		MANUAL_OK	3to3	-	11880	NA	0	63	10	68
P-0036331-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11132722	11197210	Intron of SMARCA4(+):79bp after exon 19	Promoter of LDLR(+):3Kb from tx start	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) Rearrangement :  c.2859+79:SMARCA4_c.-3015:LDLRdel	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {SMARCA4:LDLR}	64488	NA	0	6	0	8
P-0036332-T01-IM6	SOMATIC	CAMTA1	ARID1A	1	1	6963053	27087305	Intron of CAMTA1(+):78Kb after exon 3	Intron of ARID1A(+):41bp before exon 5	GRCh37	INVERSION	ARID1A (NM_006015) Rearrangement : c.1921-42:ARID1A_c.234+77783:CAMTA1inv	IMPPRECISE		MANUAL_OK	5to5	-	20124252	NA	0	6	0	6
P-0036332-T01-IM6	SOMATIC	NF1	NF1	17	17	29434548	29496970	Intron of NF1(+):12Kb after exon 1	Exon 5 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement : c.60+12161_c.541	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	62422	NA	0	6	6	6
P-0036332-T01-IM6	SOMATIC	DMRT2	PTPRD	9	9	1444584	8499680	IGR: 394Kb before DMRT2(+)	Exon 25 of PTPRD(-)	GRCh37	INVERSION	PTPRD (NM_002839) Rearrangement : chr9:g.1444584_c.2289inv	PRECISE		MANUAL_OK	5to5	-	7055096	NA	0	17	10	18
P-0036333-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16173769	16174570	Promoter of SPEN(+):589bp from tx start	Exon 1 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) Rearrangement : c.-794_c.8del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	801	NA	0	9	0	9
P-0036346-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39931590	42870600	Intron of ERG(-):16Kb after exon 3	Intron of TMPRSS2(-):484bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 fused with ERG exon4): c.56-484:TMPRSS2_c.39+15996:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2939010	NA	0	38	10	39
P-0036348-T01-IM6	SOMATIC	ANKRD11	MIR5195	16	14	89351017	107133040	Exon 9 of ANKRD11(-)	IGR: 126Kb before MIR5195(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) Rearrangement : t(14;16)(p32.31;q24.3)(chr14:g.107133040::chr16:g.89351017)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	115	10	119
P-0036351-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39885078	42872264	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG(NM_004449) Fusion (TMPRSS2 exon2 with ERG exon4) : c.56-2148:TMPRSS2_c.39+62508:ERG del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987186	NA	0	30	10	35
P-0017317-T02-IM6	SOMATIC	BRCA2	BRCA2	13	13	32914086	32915541	Exon 11 of BRCA2(+)	Intron of BRCA2(+):208bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement: c.5594_c.6841+208del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1455	NA	0	68	10	100
P-0017317-T02-IM6	SOMATIC	TSC2	TSC2	16	16	2114538	2138996	Intron of TSC2(+):110bp after exon 15	Promoter of TSC2(+):41Kb from tx start	GRCh37	DELETION	TSC2 (NM_000548) Rearrangement: c.1599+110_c.*385del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	24458	NA	0	41	0	45
P-0017317-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15367000	15370127	Exon 9 of BRD4(-)	Intron of BRD4(-):2Kb before exon 8	GRCh37	DELETION	BRD4 (NM_058243) Rearrangement: c.1342-2143_c.1626del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3127	NA	0	129	10	142
P-0029619-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29688349	128662958	Intron of EWSR1(+):127bp before exon 12	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128662958::chr22:g.29688349)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	161	10	172
P-0036378-T01-IM6	SOMATIC	TRAF7	TECRL	16	4	2221182	64449891	Intron of TRAF7(+):82bp before exon 6	IGR: 694Kb before TECRL(-)	GRCh37	TRANSLOCATION	TRAF7(NM_032271) rearrangement: t(4;16)(q13.1;p13.3)(chr4:g.64449891::chr16:g.2221182)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	10	26
P-0036378-T01-IM6	SOMATIC	TCF3	GRIN2A	19	16	1622222	10031854	Exon 9 of TCF3(-)	Exon 3 of GRIN2A(-)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) - TCF3 (NM_001136139) Rearrangement: t(16;19)(p13.2; p13.3)(chr16:g.10031854::chr19:g.1622222)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	50	10	53
P-0036378-T01-IM6	SOMATIC	PRG1	ERCC2	19	19	43841751	45868177	IGR: 11Kb before PRG1(+)	Exon 7 of ERCC2(-)	GRCh37	INVERSION	ERCC2 (NM_000400) Rearrangement: c.513:ERCC2_chr19:g.43841751inv	PRECISE		MANUAL_OK	3to3	-	2026426	NA	0	23	10	23
P-0036382-T01-IM6	SOMATIC	MAX	MAX	14	14	65543409	65561420	Intron of MAX(-):28bp before exon 5	Intron of MAX(-):887bp before exon 3	GRCh37	DELETION	MAX (NM_002382) Rearrangement: c.64-887_c.296-28del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	18011	NA	0	12	10	12
P-0001896-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29684628	128668840	Exon 7 of EWSR1(+)	Intron of FLI1(+): 6Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) Translocation:  t(22,10)(22q12.2;10q26.2)(chr22:g.29684628::chr10:g.128668840)	PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (EWSR1-FLI1)	0	NA	0	20	19	0
P-0018403-T04-IM6	SOMATIC	BRCA2	SLC30A8	13	8	32971245	118148996	Intron of BRCA2(+):64bp after exon 26	Intron of SLC30A8(+):1Kb after exon 1	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) - SLC30A8 (NM_173851) Rearrangement : t(8,12)(p13.3,q11.21)(chr8:g.118148996::chr12:g.32971245)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BRCA2:SLC30A8}	0	NA	0	23	0	22
P-0018403-T04-IM6	SOMATIC	NF1	NF1	17	17	29519550	29661735	Intron of NF1(+):8Kb before exon 9	Intron of NF1(+):120bp before exon 40	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.889-7890_c.5813-121del	PRECISE		MANUAL_OK	3to5	Deletion of 31 exons : out of frame	142185	NA	0	36	10	38
P-0018403-T04-IM6	SOMATIC	DACH2	BMPR1A	X	10	85756552	88650024	Intron of DACH2(+):13Kb before exon 3	Intron of BMPR1A(+):43bp after exon 4	GRCh37	TRANSLOCATION	BMPR1A (NM_004329) - DACH2 (NM_05328) Rearrangement :  t(X,10)(q21.1,q23.31)(chrX:g.85756552::chr10:g.88650024)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BMPR1A:DACH2}	0	NA	0	67	10	80
P-0025681-T02-IM6	SOMATIC	GNAS	CMTM8	20	3	57484734	32294158	Intron of GNAS(+):4bp before exon 10	Intron of CMTM8(+):14Kb after exon 1	GRCh37	TRANSLOCATION	CMTM8 (NM_178868) - GNAS (NM_000516) rearrangement: t(3;20)(p22.3;q13.32)(chr3:g.32294158::chr20:g.57484734)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CMTM8:GNAS}	0	NA	0	47	10	48
P-0025681-T02-IM6	SOMATIC	NSD1	RELL1	5	4	176637497	37669398	Exon 5 of NSD1(+)	Intron of RELL1(-):18Kb before exon 2	GRCh37	TRANSLOCATION	NSD1 (NM_022455) - (RELL1) NM_001085399 rearrangement: t(4;5)(p14;q35.3)(chr4:g.37669398::chr5:g.176637497)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NSD1:RELL1}	0	NA	0	40	10	40
P-0027019-T01-IM6	SOMATIC	GLI1	MARS	12	12	57864271	57897812	Exon 12 of GLI1(+)	Intron of MARS(+):195bp before exon 11	GRCh37	DELETION	GLI1 (NM_005269) - MARS (NM_004990) rearrangement: c.1748:GLI1_c.1294-196:MARSdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GLI1:MARS}	33541	NA	0	10	10	11
P-0027045-T02-IM6	SOMATIC	CBL	CBL	11	11	119126552	119168343	Intron of CBL(+):16Kb before exon 3	Intron of CBL(+):152bp after exon 14	GRCh37	DUPLICATION	CBL (NM_005188) rearrangement: c.444-15893_c.2251+152dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : out of frame	41791	NA	0	5	8	5
P-0029223-T01-IM6	SOMATIC	PKD1L2	PLCG2	16	16	81159441	81954821	Intron of PKD1L2(-):2Kb after exon 25	Exon 21 of PLCG2(+)	GRCh37	DELETION	PLCG2 (NM_002661) rearrangement: c.2254:PLCG2_chr16:g.81159441del	PRECISE		MANUAL_OK	3to5	-	795380	NA	0	8	10	8
P-0033015-T03-IM6	SOMATIC	EWSR1	SMAD3	22	15	29684885	67467785	Intron of EWSR1(+):110bp after exon 9	Intron of SMAD3(+):5Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - SMAD3 (NM_005902) fusion: t(15;22)(q23;q12.2)(chr15:g.67467785::chr22:g.29684885)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:SMAD3}	0	NA	0	43	10	55
P-0033090-T01-IM6	SOMATIC	KIF5B	MET	10	7	32305234	116412397	Intron of KIF5B(-):647bp before exon 25	Intron of MET(+):354bp after exon 14	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - MET (NM_000245) fusion (KIF5B exons 1-24 fused to MET exons 15-21):t(7;10)(q31.2;p11.22)(chr7:g.116412397::chr10:g.32305234)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:MET}	0	NA	0	18	10	21
P-0034559-T03-IM6	SOMATIC	SLX4	CREBBP	16	16	3656603	3815431	Exon 3 of SLX4(-)	Intron of CREBBP(-):2Kb after exon 16	GRCh37	DELETION	CREBBP (NM_004380) -  SLX4 (NM_032444) Rearrangement :c.3250+2290:CREBBP_ c.632:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	158828	NA	0	109	10	114
P-0034559-T03-IM6	SOMATIC	ARID1B	ARID1B	6	6	157506894	157528190	Intron of ARID1B(+):1Kb after exon 13	Exon 20 of ARID1B(+)	GRCh37	DUPLICATION	ARID1B (NM_020732) Rearrangement : c.5741_c.3376+1325dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	21296	NA	0	59	10	62
P-0034559-T03-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971020	21974246	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.150+431_c.338del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3226	NA	0	133	10	138
P-0035212-T01-IM6	SOMATIC	SUZ12	KMT2A	17	11	30264018	118342702	Promoter of SUZ12(+):25bp from tx start	Exon 3 of KMT2A(+)	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(11;17)(q23.3;q11.2)(chr11:g.118342702::chr17:g.30264018)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2A:SUZ12}	0	NA	0	15	10	23
P-0036200-T01-IM6	SOMATIC	DNAJC27-AS1	ASXL2	2	2	25223246	25991875	5-UTR of DNAJC27-AS1(+):39Kb before coding start	Intron of ASXL2(-):138bp before exon 6	GRCh37	INVERSION	ASXL2 (NM_018263) rearrangement: c.505-138:ASXL2_chr2:g.25223246inv	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {DNAJC27-AS1:ASXL2}	768629	NA	0	7	0	7
P-0036202-T01-IM6	SOMATIC	CREBBP	DNAJA2	16	16	3789623	46971847	Exon 25 of CREBBP(-)	IGR: 17Kb before DNAJA2(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.4236:CREBBP_chr16:g.46971847del	IMPPRECISE		MANUAL_OK	3to5	-	43182224	NA	0	6	0	6
P-0036204-T01-IM6	SOMATIC	ROS1	CTGF	6	6	117645559	132232360	Exon 34 of ROS1(-)	IGR: 37Kb before CTGF(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5577:ROS1_chr6:g.132232360inv	PRECISE		MANUAL_OK	3to3	-	14586801	NA	0	50	10	49
P-0036204-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55209721	55223307	Intron of EGFR(+):257bp before exon 2	Intron of EGFR(+):215bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-258_c.890-216del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	13586	NA	0	257	10	287
P-0036212-T01-IM6	SOMATIC	IGF1R	TTC23	15	15	99467941	99682064	Intron of IGF1R(+):28bp after exon 13	Intron of TTC23(-):2Kb before exon 11	GRCh37	INVERSION	IGF1R (NM_000875) - TTC23 (NM_001040659) rearrangement: c.2782+28:IGF1R_c.1144-2460:TTC23inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {IGF1R:TTC23}	214123	NA	0	5	0	5
P-0121549-T01-IM6	SOMATIC	ARID1A	SFN	1	1	27087965	27189341	Intron of ARID1A(+):1bp after exon 6	Promoter of SFN(+):291bp from tx start	GRCh37	DELETION	ARID1A (NM_006015) - SFN(NM_006142) rearrangement: c.2251+1:ARID1A_c.-363:SFNdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ARID1A:SFN}	101376	NA	0	56	10	63
P-0036232-T01-IM6	SOMATIC	TMC1	TSC1	9	9	75142084	135781394	5-UTR of TMC1(+):121Kb before coding start	Exon 15 of TSC1(-)	GRCh37	DELETION	TSC1 (NM_000368) Rearrangement: c.1571:TSC1_chr9:g.75142084del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	60639310	NA	0	18	10	18
P-0036236-T01-IM6	SOMATIC	SH2B3	LINC00967	12	8	111885689	67120297	Intron of SH2B3(+):58bp after exon 7	IGR: 16Kb before LINC00967(+)	GRCh37	TRANSLOCATION	SH2B3 (NM_005475) Rearrangement: t(8;12)(q13.1;q24.11)(chr8:g.67120297::chr12:g.111885689)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	10	0	10
P-0036236-T01-IM6	SOMATIC	PDE6B	DNMT3A	4	2	561524	25467463	IGR: 58Kb before PDE6B(+)	Exon 14 of DNMT3A(-)	GRCh37	TRANSLOCATION	DNMT3A (NM_022552) Rearrangement: t(2;4)(p23.1;p16.3(chr2:g.25467463::chr4:g.561524)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0036244-T01-IM6	SOMATIC	MGA	MGA	15	15	41971830	42057031	Intron of MGA(+):10Kb after exon 2	Intron of MGA(+):52bp before exon 23	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.1064+9674_c.7892-53del	PRECISE		MANUAL_OK	3to5	Deletion of 20 exons : out of frame	85201	NA	0	37	10	39
P-0036245-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684449	128658093	Intron of EWSR1(+):145bp before exon 9	Intron of FLI1(+):6Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128658093::chr22:g.29684449)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	73	10	125
P-0036247-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12038726	12043175	Intron of MAP2K4(+):4Kb before exon 10	Exon 10 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.1041-4430_c.1060del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4449	NA	0	16	10	17
P-0036247-T01-IM6	SOMATIC	ALK	EML4	2	2	29447857	42522763	Intron of ALK(-):469bp after exon 19	Intron of EML4(+):107bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+107:EML4_c.3172+470:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13074906	NA	0	87	10	87
P-0036349-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40097824	42871487	IGR: 13Kb before LINC00114(-)	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : c.56-1371:TMPRSS2_chr21:g.40097824del	PRECISE		MANUAL_OK	3to5	-	2773663	NA	0	127	10	142
P-0036357-T01-IM6	SOMATIC	FAM222B	CDK12	17	17	27096697	37681100	5-UTR of FAM222B(-):11Kb before coding start	Exon 12 of CDK12(+)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3269:CDK12_chr17:g.27096697inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAM222B:CDK12}	10584403	NA	0	45	10	56
P-0036368-T01-IM6	SOMATIC	SNAI1	RTEL1	20	20	48618565	62319781	IGR: 19Kb before SNAI1(+)	Intron of RTEL1(+):42bp after exon 20	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.1794+42:RTEL1_chr20:g.48618565inv	PRECISE		MANUAL_OK	5to5	-	13701216	NA	0	11	10	11
P-0036409-T01-IM6	SOMATIC	FLCN	COPS3	17	17	17124517	17182163	Intron of FLCN(-):333bp after exon 8	Intron of COPS3(-):2Kb after exon 1	GRCh37	DUPLICATION	FLCN (NM_144997) - COPS3 (NM_003653) rearrangement: c.871+334:FLCN_c.55+2283:COPS3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FLCN:COPS3}	57646	NA	0	15	10	17
P-0036411-T01-IM6	SOMATIC	PTDSS1	RAD50	8	5	97283528	131923393	Intron of PTDSS1(+):2Kb before exon 2	Intron of RAD50(+):11bp after exon 6	GRCh37	TRANSLOCATION	RAD50 (NM_005732) - PTDSS1 (NM_014754) rearrangement: t(5;8)(q31.1;q22.1)(chr5:g.131923393::chr8:g.97283528)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RAD50:PTDSS1}	0	NA	0	60	10	60
P-0036423-T01-IM6	SOMATIC	WDR7	MALT1	18	18	54686372	56338906	Intron of WDR7(+):2Kb before exon 26	Exon 1 of MALT1(+)	GRCh37	DUPLICATION	MALT1 (NM_006785) - WDR7 (NM_015285) rearrangement: c.31:MALT1_c.4165-1604:WDR7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MALT1:WDR7}	1652534	NA	0	6	7	6
P-0036438-T01-IM6	SOMATIC	CPM	IDH1	12	2	69293886	209108415	Intron of CPM(-):14Kb before exon 3	Intron of IDH1(-):87bp before exon 6	GRCh37	TRANSLOCATION	CPM (NM_001005502) - IDH1 (NM_005896) rearrangement t(2;12)(q34;q15)(chr2:g.209108415::chr12:g.69293886)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CPM:IDH1}	0	NA	0	14	10	14
P-0036438-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867517	42867649	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1144:TMPRSS2_c.18+2770:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3000132	NA	0	38	10	38
P-0036441-T01-IM6	SOMATIC	PPP2R1A	ZFC3H1	19	12	52715868	72019702	Intron of PPP2R1A(+):70bp before exon 5	Intron of ZFC3H1(-):337bp after exon 22	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) - ZFC3H1 (NM_144982) rearrangement: t(12;19)(q21.2;q13.41)(chr12:g.72019702::chr19:g.52715868)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ZFC3H1:PPP2R1A}	0	NA	0	45	10	48
P-0036458-T01-IM6	SOMATIC	SF3B1	SF3B1	2	2	198272751	198283488	Exon 9 of SF3B1(-)	Intron of SF3B1(-):176bp before exon 5	GRCh37	DELETION	SF3B1 (NM_012433) rearrangement: c.416-176_c.1210del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10737	NA	0	23	10	23
P-0036481-T01-IM6	SOMATIC	KAZN	SPEN	1	1	14808094	16254867	IGR: 117Kb before KAZN(+)	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.2132:SPEN_chr1:g.14808094del	PRECISE		MANUAL_OK	3to5	-	1446773	NA	0	17	10	18
P-0036548-T01-IM6	SOMATIC	LINC01515	NOTCH1	10	9	67097146	139396407	IGR: 234Kb before LINC01515(+)	Intron of NOTCH1(-):42bp before exon 30	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;10)(q34.3;q21.3)(chr9:g.139396407::chr10:g.67097146)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	19
P-0036553-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37433697	37619062	Intron of FBXL20(-):2Kb before exon 9	Exon 1 of CDK12(+)	GRCh37	INVERSION	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.697-2344:FBXL20_c.738:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FBXL20:CDK12}	185365	NA	0	6	8	7
P-0036553-T01-IM6	SOMATIC	NEUROD2	BRCA1	17	17	37741308	41246018	IGR: 19Kb before NEUROD2(-)	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.1530:BRCA1_chr17:g.37741308inv	IMPPRECISE		MANUAL_OK	5to5	-	3504710	NA	0	12	0	18
P-0036499-T01-IM6	SOMATIC	NTRK1	NAV1	1	1	156843745	201743979	Exon 8 of NTRK1(+)	Intron of NAV1(+):6Kb before exon 2	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1171:NTRK1_chr1:g.201743979inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	44900234	NA	0	5	0	5
P-0035896-T02-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52723487	52726779	Exon 11 of PPP2R1A(+)	Intron of PPP2R1A(+):1Kb after exon 13	GRCh37	DELETION	PPP2R1A (NM_014225) rearrangement: c.1348_c.1661+1285del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3292	NA	0	17	10	17
P-0036288-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488128	57493118	Intron of NAB2(+):266bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion: c.1469-267:NAB2_c.1850:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	4990	NA	0	36	10	36
P-0036292-T01-IM6	SOMATIC	TSC2	LHFPL3	16	7	2138054	104453296	Exon 40 of TSC2(+)	Intron of LHFPL3(+):76Kb after exon 2	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(7;16)(q22.3;p13.3)(chr7:g.104453296::chr16:g.2138054)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	14
P-0036293-T01-IM6	SOMATIC	CD3G	KMT2A	11	11	118226548	118367063	Promoter of CD3G(+):11Kb from tx start	Exon 20 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.5645:KMT2A_chr11:g.118226548del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD3G:KMT2A}	140515	NA	0	33	10	34
P-0036293-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157071585	157527316	IGR: 27Kb before ARID1B(+)	Exon 20 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.4867:ARID1B_chr6:g.157071585del	PRECISE		MANUAL_OK	3to5	-	455731	NA	0	119	10	131
P-0036294-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866085	42867521	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -  ERG (NM_182918) fusion: c.127-1016:TMPRSS2_c.18+4202:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001436	NA	0	62	10	65
P-0036370-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30666529	30680829	Promoter of MDC1(-):1Kb from tx start	Exon 5 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.890:MDC1_chr6:g.30666529inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	14300	NA	0	21	10	34
P-0036375-T01-IM6	SOMATIC	CDK4	ATP6V1C2	12	2	58144811	10902938	Exon 4 of CDK4(-)	Intron of ATP6V1C2(+):2Kb before exon 5	GRCh37	TRANSLOCATION	ATP6V1C2 (NM_001039362) - CDK4 (NM_000075) rearrangement: t(2;12)(p25.1;q13.3)(chr2:g.10902938::chr12:g.58144811)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATP6V1C2:CDK4}	0	NA	0	6	10	6
P-0036392-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30959921	31019664	Intron of ASXL1(+):3Kb after exon 3	Intron of ASXL1(+):182bp after exon 9	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.252+2995_c.979+182inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	59743	NA	0	15	10	14
P-0036498-T01-IM6	SOMATIC	CALN1	HGF	7	7	71466589	81340621	Intron of CALN1(-):22Kb after exon 4	Intron of HGF(-):175bp after exon 12	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.1444+176:HGF_chr7:g.71466589inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	9874032	NA	0	8	10	8
P-0026713-T01-IM6	SOMATIC	B3GALTL	BRCA2	13	13	31950553	32912028	IGR: 176Kb before B3GALTL(+)	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.3536:BRCA2_chr13:g.31950553inv	PRECISE		MANUAL_OK	3to3	-	961475	NA	0	66	10	66
P-0031235-T04-IM6	SOMATIC	RIT1	CCT3	1	1	155880243	156284694	Exon 3 of RIT1(-)	Intron of CCT3(-):2Kb after exon 10	GRCh37	DUPLICATION	RIT1 (NM_006912) - CCT3 (NM_005998) rearrangement: c.161:RIT1_c.974+2263:CCT3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RIT1:CCT3}	404451	NA	0	28	10	33
P-0031235-T04-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139397533	139418738	Intron of NOTCH1(-):100bp after exon 27	Intron of NOTCH1(-):307bp before exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement:  c.141-307_c.5167+101del	PRECISE		MANUAL_OK	3to5	Deletion of 25 exons : out of frame	21205	NA	0	200	10	238
P-0031362-T03-IM6	SOMATIC	EWSR1	NFATC2	22	20	29686324	50134834	Intron of EWSR1(+):1Kb before exon 10	Intron of NFATC2(-):1Kb before exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - NFATC2 (NM_173091) fusion (EWSR1 exons 1-9 fused to NFATC2 exons 3-10): t(20;22)(q13.2;q12.2)(chr20:g.50134834::chr22:g.29686324)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:NFATC2}	0	NA	0	14	10	14
P-0035514-T03-IM6	SOMATIC	MTOR	PDPN	1	1	11318618	13939806	Exon 3 of MTOR(-)	Intron of PDPN(+):375bp before exon 4	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.195:MTOR_chr1:g.13939806del	PRECISE		MANUAL_OK	3to5	-	2621188	NA	0	4	10	4
P-0035514-T03-IM6	SOMATIC	SMAD2	SMAD2	18	18	45389280	45395846	Intron of SMAD2(-):2Kb after exon 6	Intron of SMAD2(-):39bp before exon 4	GRCh37	DUPLICATION	SMAD2 (NM_001003652) rearrangement: c.327-39_c.730+2150dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6566	NA	0	8	10	8
P-0035514-T03-IM6	SOMATIC	MED20	CCND3	6	6	41884989	41904506	Intron of MED20(-):312bp before exon 2	Intron of CCND3(-):73bp before exon 4	GRCh37	DUPLICATION	MED20 (NM_004275) - CCND3 (NM_001760) rearrangement: c.15-312:MED20_c.575-73:CCND3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MED20:CCND3}	19517	NA	0	2	9	2
P-0036425-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70119783	70121702	Exon 3 of SOX9(+)	3-UTR of SOX9(+):4Kb after coding stop	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: c.785:SOX9_chr17:g.70121702del	IMPPRECISE		MANUAL_OK	3to5	-	1919	NA	0	37	0	38
P-0036433-T01-IM6	SOMATIC	PPP6R3	FGF3	11	11	68232224	69631211	5-UTR of PPP6R3(+):73Kb before coding start	Intron of FGF3(-):20bp before exon 2	GRCh37	INVERSION	FGF3 (NM_005247) rearrangement: c.221-20:FGF3_chr11:g.68232224inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PPP6R3:FGF3}	1398987	NA	0	5	8	5
P-0036531-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117854751	117861059	IGR: 3Kb before RAD21(-)	Intron of RAD21(-):125bp after exon 13	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.1704+126:RAD21_chr8:g.117854751del	PRECISE		MANUAL_OK	3to5	-	6308	NA	0	23	10	24
P-0036545-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39877185	42870580	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):464bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-464:TMPRSS2_c.40-59641:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993395	NA	0	90	10	92
P-0036545-T01-IM6	SOMATIC	LOC101929550	WHSC1L1	8	8	36081862	38173453	IGR: 552Kb before LOC101929550(-)	Exon 10 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.1963_chr8:g.36081862inv	PRECISE		MANUAL_OK	3to3	-	2091591	NA	0	22	10	22
P-0036546-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49442891	49446062	Exon 12 of KMT2D(-)	Exon 10 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.1404_c.4017del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3171	NA	0	33	10	36
P-0036573-T01-IM6	SOMATIC	LINC00114	TMPRSS2	21	21	40068238	42870653	IGR: 43Kb before LINC00114(-)	Intron of TMPRSS2(-):537bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : c.56-537_chr21:g.40068238del	PRECISE		MANUAL_OK	3to5	-	2802415	NA	0	43	10	45
P-0036594-T01-IM6	SOMATIC	MAN1C1	ARID1A	1	1	26047118	27099884	Intron of MAN1C1(+):26Kb before exon 3	Exon 15 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) - MAN1C1 (NM_020379) Rearrangement: c.3763:ARID1A_c.638-26041:MAN1C1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARID1A:MAN1C1}	1052766	NA	0	38	10	42
P-0036662-T01-IM6	SOMATIC	C5orf42	NTRK1	5	1	37075787	156837969	IGR: 31Kb before C5orf42(-)	Exon 5 of NTRK1(+)	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) rearrangement: t(1;5)(q23.1;p13.2)(chr1:g.156837969::chr5:g.37075787)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	163	10	203
P-0036662-T01-IM6	SOMATIC	SHPRH	NTRK1	6	1	146225530	156831180	Intron of SHPRH(-):6Kb after exon 25	Intron of NTRK1(+):242bp after exon 1	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) - SHPRH (NM_001042683) rearrangement: t(1;6)(q231;q24.3)(chr1:g.156831180::chr6:g.146225530)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NTRK1:SHPRH}	0	NA	0	8	6	8
P-0036669-T01-IM6	SOMATIC	EWSR1	CDADC1	22	13	29694130	49835899	Intron of EWSR1(+):191bp after exon 14	Intron of CDADC1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CDADC1 (NM_030911) rearrangement: t(13;22)(q14.2;q12.2)(chr13:g.49835899::chr22:g.29694130)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CDADC1}	0	NA	0	126	0	130
P-0036669-T01-IM6	SOMATIC	FAM122B	EP300	X	22	133828640	41560109	IGR: 75Kb before FAM122B(-)	Exon 22 of EP300(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(X;22)(q26.3;q13.2)(chrX:g.133828640::chr22:g.41560109)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	62	10	64
P-0007082-T03-IM6	SOMATIC	TACC3	FGFR3	4	4	1737170	1808872	Intron of TACC3(+):118bp after exon 7	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3(NM_000142) - TACC3(NM_006342) Fusion (FGFR3 exon 18 fused to TACC3 exon 8)  : c.2304:FGFR3_c.1644+118:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71702	NA	0	7	10	7
P-0007082-T03-IM6	SOMATIC	SESN1	HS3ST5	6	6	109322640	115250584	Exon 3 of SESN1(-)	IGR: 874Kb before HS3ST5(-)	GRCh37	DELETION	SESN1 (NM_014454) Rearrangement: c.397:SESN1_chr6:g.115250584del	PRECISE		MANUAL_OK	3to5	-	5927944	NA	0	128	10	138
P-0015747-T02-IM6	SOMATIC	NOTCH3	LOC646813	19	11	15300035	50748105	Intron of NOTCH3(-):48bp after exon 7	IGR: 380Kb before LOC646813(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangment: t(11;19)(p11.12;p13.12)(chr11:g.50748105::chr19:g.15300035)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	38	10	38
P-0016686-T02-IM6	SOMATIC	SLX4	SLX4	16	16	3632214	3639414	3-UTR of SLX4(-):128bp after coding stop	Exon 12 of SLX4(-)	GRCh37	DUPLICATION	SLX4 (NM_032444) Rearrangement : c.4225_c.*129dup	PRECISE		MANUAL_OK	5to3	-	7200	NA	0	51	10	54
P-0023910-T06-IM6	SOMATIC	NEDD1	FLT4	12	5	97517987	180046682	IGR: 217Kb before NEDD1(+)	Exon 18 of FLT4(-)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;12)(q25.3;q23.1)(5:180046682::chr12:g.97517987)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	38
P-0023910-T06-IM6	SOMATIC	MIR4275	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	41	10	41
P-0024686-T02-IM6	SOMATIC	TMPRSS2	PLCD3	21	17	42840366	43208249	Exon 12 of TMPRSS2(-)	Intron of PLCD3(-):1Kb after exon 1	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - PLCD3 (NM_133373) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.43208249::chr21:g.42840366)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	48	10	48
P-0024686-T02-IM6	SOMATIC	TMPRSS2	ETV4	21	17	42840400	41615041	Exon 12 of TMPRSS2(-)	Intron of ETV4(-):1Kb before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV4 (NM_001986) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41615041::chr21:g.42840400)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMPRSS2:ETV4}	0	NA	0	64	10	69
P-0028690-T01-IM6	SOMATIC	LUZP2	CCND1	11	11	24441784	69466143	IGR: 77Kb before LUZP2(+)	3-UTR of CCND1(+):10Kb after coding stop	GRCh37	INVERSION	CCND1 (NM_053056) Rearrangement: chr11:g.24441784_c.*93inv	PRECISE		MANUAL_OK	3to3	-	45024359	NA	0	17	10	17
P-0032061-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55197558	55221881	Intron of EGFR(+):12Kb before exon 2	Intron of EGFR(+):36bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-12421_c.889+36del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	24323	NA	0	186	0	212
P-0035991-T01-IM6	SOMATIC	TRAF2	TRAF2	9	9	139793905	139801365	Intron of TRAF2(+):140bp before exon 3	Intron of TRAF2(+):1Kb before exon 5	GRCh37	DUPLICATION	TRAF2 (NM_021138) rearrangement: c.189-141_c.367-1157dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	7460	NA	0	27	10	28
P-0036558-T01-IM6	SOMATIC	CHST1	PRDM14	11	8	45629910	70980437	IGR: 39Kb before CHST1(-)	Intron of PRDM14(-):27bp after exon 4	GRCh37	TRANSLOCATION	PRDM14 (NM_024504) rearrangement: t(8;11)(q13.3;p11.2)(chr8:g.70980437::chr11:g.45629910)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	222	10	245
P-0036560-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39944555	42869154	Intron of ERG(-):3Kb after exon 3	Intron of TMPRSS2(-):891bp after exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+3031:ERG_c.126+892:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2924599	NA	0	3	10	3
P-0036574-T01-IM6	SOMATIC	CD276	ESM1	15	5	73996135	54239847	Exon 5 of CD276(+)	IGR: 34Kb before ESM1(-)	GRCh37	TRANSLOCATION	CD276 (NM_001024736) Rearrangement:  t(5;15)(q11.2;q24.1)(chr5:g.54239847::chr15:g.73996135)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	190	10	239
P-0036579-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44943048	44950077	Intron of KDM6A(+):195bp after exon 23	Exon 26 of KDM6A(+)	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.3433+195_c.3846inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7029	NA	0	17	10	17
P-0036582-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15365172	15405858	Intron of BRD4(-):99bp before exon 11	IGR: 48Kb before BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2048-99:BRD4_chr19:g.15405858del	PRECISE		MANUAL_OK	3to5	-	40686	NA	0	4	9	4
P-0036583-T01-IM6	SOMATIC	SDHAF2	MGMT	11	10	61201093	131288948	Intron of SDHAF2(+):3Kb after exon 1	Intron of MGMT(+):23Kb after exon 1	GRCh37	TRANSLOCATION	SDHAF2 (NM_017841) - MGMT (NM_002412) rearrangement: t(10;11)(q26.3;q12.2)(chr10:g.131288948::chr11:g.61201093)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SDHAF2:MGMT}	0	NA	0	19	10	18
P-0036629-T01-IM6	SOMATIC	YES1	UBE2J1	18	6	743188	90029853	Intron of YES1(-):71bp after exon 7	IGR: 6Kb before UBE2J1(-)	GRCh37	TRANSLOCATION	YES1 (NM_005433) Rearrangement : t(6;18)(q14.3; p11.31)(chr6:g.90029853::chr18:g.743188)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	80	10	90
P-0036631-T01-IM6	SOMATIC	KDM6A	CXorf36	X	X	44966697	44979900	Exon 27 of KDM6A(+)	IGR: 28Kb before CXorf36(-)	GRCh37	INVERSION	KDM6A (NM_021140) Rearrangement : c.3921_chrX:g.44979900inv	PRECISE		MANUAL_OK	3to3	-	13203	NA	1	13	10	11
P-0036778-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	4120570	4123788	Intron of MAP2K2(-):3Kb before exon 2	Exon 1 of MAP2K2(-)	GRCh37	DELETION	MAP2K2 (NM_030662) Rearrangement: c.85_c.93-2943del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3218	NA	0	7	10	7
P-0002240-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29683801	128638556	Intron of EWSR1(+): 678bp after exon 6	Intron of FLI1(+): 389bp after exon 3	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: in frame (EWSR1-FLI1)	0	NA	0	9	21	0
P-0013922-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29688612	128644690	Intron of EWSR1(+): 17bp after exon 10	Intron of FLI1(+): 2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-10 fused to FLI1 exons 5-9): t(11;22)(q24.3;q12.2)(chr11:g.128644690::chr22:g.29688612)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	61	38	53
P-0033663-T02-IM6	SOMATIC	EP300	EP300	22	22	41564877	41570864	Intron of EP300(+):6bp after exon 25	Intron of EP300(+):1Kb after exon 29	GRCh37	INVERSION	EP300 (NM_001429) Rearrangement: c.4172+6_c.4779+1076inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5987	NA	0	21	10	21
P-0036746-T01-IM6	SOMATIC	RPL27	BRCA1	17	17	41153639	41244192	Intron of RPL27(+):1Kb before exon 4	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) - RPL27 (NM_000988) Rearrangement : c.3356:BRCA1_c.252-1051:RPL27inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRCA1:RPL27}	90553	NA	0	6	8	6
P-0006985-T01-IM5	SOMATIC	XPO1	XPO1	2	2	61729073	61749565	Intron of XPO1(-): 58bp after exon 6	Intron of XPO1(-): 181bp after exon 4	GRCh37	DUPLICATION	XPO1 (NM_003400) rearrangement :  c.301+181_408+58dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: out of frame	20492	NA	0	14	14	14
P-0006985-T01-IM5	SOMATIC	MIRLET7A1	FLT4	9	5	96895850	180049692	IGR: 42Kb before MIRLET7A1(+)	Intron of FLT4(-): 39bp after exon 12	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement : t(5;9)(chr5q35.3;chr9q22.32)(chr5:g.180049692::chr9:g.96895850)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	6	14
P-0015537-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151899996	151948483	Intron of KMT2C(-):22bp after exon 26	Intron of KMT2C(-):432bp before exon 12	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.1622-432_c.4092+23dup	PRECISE		MANUAL_OK	5to3	Duplication of 15 exons : out of frame	48487	NA	0	27	10	28
P-0020290-T02-IM6	SOMATIC	APC	SRP19	5	5	112175749	112194235	Exon 16 of APC(+)	Promoter of SRP19(+):3Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4458_chr5:g.112194235del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	18486	NA	0	103	10	105
P-0035898-T01-IM6	SOMATIC	FAM126B	CASP8	2	2	201843889	202149886	3-UTR of FAM126B(-):2Kb after coding stop	Exon 8 of CASP8(+)	GRCh37	DUPLICATION	CASP8 (NM_001080125) rearrangement: chr2:g.201843889_c.1327:CASP8dup	PRECISE		MANUAL_OK	5to3	-	305997	NA	0	6	8	7
P-0036000-T01-IM6	SOMATIC	STK11	STK11	19	19	1192835	1220313	IGR: 13Kb before STK11(+)	Intron of STK11(+):58bp before exon 4	GRCh37	DELETION	STK11 (NM_000455) Rearrangement: chr19:g.1192835_c.465-59del	IMPPRECISE		MANUAL_OK	3to5	-	27478	NA	0	7	0	7
P-0036563-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1727442	1804890	Intron of TACC3(+):2Kb after exon 3	Intron of FGFR3(+):528bp before exon 8	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion(FGFR3 exon7 fused with TACC3 exon4) :  c.931-529:FGFR3_c.305+1845:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FGFR3:TACC3}	77448	NA	0	16	10	17
P-0036563-T01-IM6	SOMATIC	RPS6KA3	RBM10	X	X	20502473	47041070	IGR: 334Kb before RPS6KA3(-)	Intron of RBM10(+):25bp after exon 14	GRCh37	INVERSION	RBM10 (NM_001204468) Rearrangement : c.1770+25:RBM10_chrX:g.20502473inv	PRECISE		MANUAL_OK	3to3	-	26538597	NA	0	36	10	34
P-0036613-T01-IM6	SOMATIC	MEF2B	ZNF623	19	8	19256750	144708079	Exon 9 of MEF2B(-)	IGR: 10Kb before ZNF623(+)	GRCh37	TRANSLOCATION	MEF2B (NM_001145785) rearrangement: t(8;19)(q24.3;p13.11)(chr8:g.144708079::chr19:g.19256750)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	19	10	19
P-0036614-T01-IM6	SOMATIC	OSGEP	SESN3	14	11	20919466	94923183	Intron of OSGEP(-):666bp after exon 3	Intron of SESN3(-):58bp before exon 4	GRCh37	TRANSLOCATION	OSGEP (NM_017807) - SESN3 (NM_144665) rearrangement: t(11;14)(q21;q11.2)(chr11:g.94923183::chr14:g.20919466)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {OSGEP:SESN3}	0	NA	0	11	10	11
P-0036645-T01-IM6	SOMATIC	LARP4B	GATA3	10	10	976083	8100516	5-UTR of LARP4B(-):117Kb before coding start	Exon 3 of GATA3(+)	GRCh37	INVERSION	GATA3 (NM_002051) - LARP4B (NM_015155) rearrangement: c.490:GATA3_c.-40+1285:LARP4Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GATA3:LARP4B}	7124433	NA	0	26	10	25
P-0036645-T01-IM6	SOMATIC	NBN	CSMD3	8	8	90967635	114007709	Exon 10 of NBN(-)	Intron of CSMD3(-):24Kb after exon 6	GRCh37	INVERSION	NBN (NM_002485) - CSMD3 (NM_198123) rearrangement: c.1273:NBN_c.1031-19332: CSMD3inv	PRECISE		MANUAL_OK	3to3	-	23040074	NA	0	36	10	34
P-0036677-T01-IM6	SOMATIC	KDM6A	ZHX1	X	8	44941938	124293775	Intron of KDM6A(+):21bp before exon 22	IGR: 33Kb before ZHX1(-)	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(X;8)(q24.13;p11.3)(chrX:g.44941938::chr8:g.124293775)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	61	10	60
P-0036687-T01-IM6	SOMATIC	ASXL2	PPM1G	2	2	26022503	27624866	Intron of ASXL2(-):99bp before exon 4	Intron of PPM1G(-):7Kb after exon 1	GRCh37	DELETION	PPM1G (NM_177983) - ASXL2 (NM_018263) rearrangement: c.120+7304:PPM1G_c.253-99:ASXL2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PPM1G:ASXL2}	1602363	NA	0	29	10	29
P-0036717-T01-IM6	SOMATIC	SMARCA4	TNRC6C	19	17	11141361	76087542	Intron of SMARCA4(+):44bp before exon 25	Exon 15 of TNRC6C(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: (17;19)(q25.3;p13.2)(chr17:g.76087542::chr19:g.11141361)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	51	10	65
P-0036726-T01-IM6	SOMATIC	NF1	NF1	17	17	29556869	29611863	Exon 22 of NF1(+)	Intron of NF1(+):20Kb after exon 36	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.2867_c.4835+19506dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	54994	NA	0	17	10	40
P-0036726-T01-IM6	SOMATIC	SNTG1	NBN	8	8	50486774	90967727	IGR: 336Kb before SNTG1(+)	Exon 10 of NBN(-)	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.1181:NBN_chr8:g.50486774del	PRECISE		MANUAL_OK	3to5	-	40480953	NA	0	35	10	35
P-0036759-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39931315	39932797	Intron of BCOR(-):286bp after exon 4	Exon 4 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.1802_c.2997+287del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1482	NA	0	27	10	28
P-0036849-T01-IM6	SOMATIC	GSK3B	GSK3B	3	3	119553258	119624503	Intron of GSK3B(-):8Kb before exon 12	Intron of GSK3B(-):98bp after exon 7	GRCh37	DELETION	GSK3B (NM_002093) rearrangement: c.813+99_c.1235-7556del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	71245	NA	0	9	10	9
P-0036850-T01-IM6	SOMATIC	C20orf203	PTPRT	20	20	31231021	40981149	3-UTR of C20orf203(-):7Kb after coding stop	Intron of PTPRT(-):224bp before exon 10	GRCh37	INVERSION	PTPRT (NM_133170) - C20orf203 (NM_182584) rearrangement: c.1561-224:PTPRT_c.*1178-2532:C20orf203inv	PRECISE		MANUAL_OK	3to3	-	9750128	NA	0	12	10	12
P-0036850-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151859995	151999385	Exon 43 of KMT2C(-)	Intron of KMT2C(-):8Kb after exon 6	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.849+7666_c.10667dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	139390	NA	0	69	10	78
P-0036854-T01-IM6	SOMATIC	ARID1B	SLC22A2	6	6	157505503	160651538	Exon 13 of ARID1B(+)	Intron of SLC22A2(-):6Kb before exon 10	GRCh37	INVERSION	ARID1B (NM_020732) -  SLC22A2 (NM_003058) rearrangement: c.3310:ARID1B_c.1502-570:SLC22A2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1B:SLC22A2}	3146035	NA	0	61	10	62
P-0036920-T01-IM6	SOMATIC	PRR20D	ERCC5	13	13	57179785	103515350	IGR: 535Kb before PRR20D(+)	Exon 8 of ERCC5(+)	GRCh37	DELETION	ERCC5 (NM_000123) rearrangement: chr13:g.57179785_c.1851del	PRECISE		MANUAL_OK	3to5	-	46335565	NA	0	87	10	91
P-0019670-T03-IM6	SOMATIC	ROS1	TFG	6	3	117643761	100448554	Intron of ROS1(-):1Kb before exon 35	Intron of TFG(+):852bp after exon 4	GRCh37	TRANSLOCATION	TFG (NM_001195478) - ROS1 (NM_002944) fusion (TFG exon 4 fused to ROS1 exon 35): t(3;6)(q12.2;q22.1)(chr3:g.100448554::chr6:g.117643761)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TFG:ROS1}	0	NA	0	5	10	5
P-0027944-T03-IM6	SOMATIC	FADD	EGFR	11	7	70052330	55241077	Exon 2 of FADD(+)	Intron of EGFR(+):260bp after exon 17	GRCh37	TRANSLOCATION	EGFR (NM_005228) - FADD (NM_003824) rearrangement: t(7;11)(p11.2;q13.3)(chr7:g55241077::chr11:g70052330)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EGFR:FADD}	0	NA	0	354	10	402
P-0027944-T03-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72817528	72821718	3-UTR of ZFHX3(-):4Kb after coding stop	Exon 10 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : c.10457_c.*3535del	IMPPRECISE		MANUAL_OK	3to5	-	4190	NA	0	39	0	43
P-0036698-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76937578	76947148	Exon 9 of ATRX(-)	Intron of ATRX(-):2Kb after exon 6	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.484+2165_c.3170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9570	NA	0	6	10	6
P-0036702-T01-IM6	SOMATIC	ROS1	NUS1	6	6	117711069	118032766	Intron of ROS1(-):60bp before exon 12	Promoter of NUS1(+):36Kb from tx start	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.1263-60:ROS1_chr6:g.118032766inv	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {NUS1:ROS1}	321697	NA	0	35	0	34
P-0036732-T01-IM6	SOMATIC	MGA	EHD4	15	15	41989235	42199394	Intron of MGA(+):14bp after exon 3	Intron of EHD4(-):3Kb after exon 5	GRCh37	DELETION	MGA (NM_001164273) Rearrangement: c.2013+14:MGA_chr15:g.42199394del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	210159	NA	0	50	10	100
P-0036790-T01-IM6	SOMATIC	LMBR1	WHSC1	7	4	156622703	1961352	Intron of LMBR1(-):3Kb before exon 4	Exon 17 of WHSC1(+)	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) - LMBR1 (NM_022458) rearrangement: t(4;7)(p16.1;q36.3)(chr4:g.1961352::chr7:g.156622703)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {WHSC1:LMBR1}	0	NA	0	5	10	5
P-0036810-T01-IM6	SOMATIC	STK11	STK11	19	19	1220534	1222036	Intron of STK11(+):30bp after exon 4	Intron of STK11(+):31bp after exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.597+30_c.920+31del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1502	NA	0	49	10	49
P-0036857-T02-IM6	SOMATIC	RNF43	LEMD3	17	12	56434728	65633870	Intron of RNF43(-):100bp after exon 9	Intron of LEMD3(+):45bp before exon 8	GRCh37	TRANSLOCATION	LEMD3 (NM_014319) - RNF43 (NM_017763) rearrangement: t(12;17)(q14.3;q22)(chr12:g.65633870::chr17:g.56434728)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {LEMD3:RNF43}	0	NA	0	5	10	5
P-0036892-T01-IM6	SOMATIC	APC	APC	5	5	112175480	112177756	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.4189_c.6465del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2276	NA	0	61	10	62
P-0036893-T01-IM6	SOMATIC	RAB8A	PIK3R2	19	19	16219790	18274014	Promoter of RAB8A(+):3Kb from tx start	Intron of PIK3R2(+):57bp after exon 10	GRCh37	INVERSION	PIK3R2 (NM_005027) Rearrangement : c.1290+57:PIK3R2_c.-2922:RAB8Ainv	PRECISE		MANUAL_OK	5to5	-	2054224	NA	0	23	10	23
P-0036895-T01-IM6	SOMATIC	NF2	LOC100420587	22	19	30079061	28825367	Intron of NF2(+):1Kb after exon 15	IGR: 101Kb before LOC100420587(-)	GRCh37	TRANSLOCATION	NF2 (NM_000268) Rearrangement : t(19,22)(q11,q12.2)(chr19:g.28825367::chr22:g.30079061)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	10	36
P-0036766-T01-IM6	SOMATIC	ATR	ATR	3	3	142276634	142277488	Intron of ATR(-):831bp after exon 8	Exon 8 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.1863_c.1885+832del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	854	NA	0	35	0	36
P-0036710-T02-IM6	SOMATIC	CBLN1	CYLD	16	16	49348764	50815366	IGR: 37Kb before CBLN1(-)	Intron of CYLD(+):44bp after exon 9	GRCh37	INVERSION	CYLD (NM_001042355) rearrangement: c.1675+44:CYLD_chr16:g.49348764inv	IMPPRECISE		MANUAL_OK	3to3	-	1466602	NA	0	5	0	5
P-0036937-T01-IM6	SOMATIC	EXOC4	BRAF	7	7	133408363	140490241	Intron of EXOC4(+):93Kb after exon 10	Intron of BRAF(-):3Kb before exon 9	GRCh37	INVERSION	EXOC4 (NM_021807) - BRAF (NM_004333) fusion: c.1514+93469:EXOC4_c.1141-2857:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EXOC4:BRAF}	7081878	NA	0	37	10	34
P-0037005-T01-IM6	SOMATIC	ITSN1	IGF1R	21	15	35197921	99456690	Intron of ITSN1(+):1Kb before exon 26	Intron of IGF1R(+):179bp after exon 8	GRCh37	TRANSLOCATION	IGF1R (NM_000875) - ITSN1 (NM_003024) rearrangement: t(15;21)(q26.3;q22.11)(chr15:g.99456690::chr21:g.35197921)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {IGF1R:ITSN1}	0	NA	0	6	5	5
P-0037005-T01-IM6	SOMATIC	ATR	EMBP1	3	1	142184004	121485434	Exon 41 of ATR(-)	IGR: 225Kb before EMBP1(+)	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(1;3)(p11.2;q23)(chr1:g.121485434::chr3:g.142184004)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	31
P-0037008-T01-IM6	SOMATIC	CTNNB1	ULK4	3	3	41267368	41368388	Intron of CTNNB1(+):16bp after exon 6	Intron of ULK4(-):71Kb after exon 35	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.936+16:CTNNB1_chr3:g.41368388del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	101020	NA	0	14	10	14
P-0012649-T02-IM6	SOMATIC	STK11	STK11	19	19	1220252	1221859	Intron of STK11(+):119bp before exon 4	Intron of STK11(+):88bp before exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.465-120_c.863-89del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1607	NA	0	9	0	9
P-0013987-T01-IM5	SOMATIC	CDH1	ZNF815	16	7	68857488	5867768	Exon 13 of CDH1(+)	5-UTR of ZNF815(+): 26Kb before coding start	GRCh37	TRANSLOCATION	CDH1 (NM_004360) Rearrangement : t(7;16)(p22.1;q22.1)(chr7:g.5867768::chr16:g:68857488)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	48	39	47
P-0014384-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31388969	31390317	Intron of DNMT3B(+):114bp before exon 19	Intron of DNMT3B(+):41bp after exon 20	GRCh37	DUPLICATION	DNMT3B (NM_006892) Rearrangement : c.1997-115_c.2231+41dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1348	NA	0	91	10	92
P-0015217-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29687670	128668247	Intron of EWSR1(+): 82bp after exon 8	Intron of FLI1(+): 7Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)  - FLI1 (NM_002017)  rearrangement: t(11;22)(q24.3;q12.2)(chr11:g.128668247::chr22:g.29687670)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	72	29	71
P-0015224-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206647994	206649498	Intron of IKBKE(+): 180bp after exon 4	Intron of IKBKE(+): 26bp before exon 6	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement : c.228+180_c.359-26inv	IMPRECISE		MANUAL_OK	5to5	-	1504	NA	0	11	0	11
P-0015224-T01-IM6	SOMATIC	CD79B	RGS9	17	17	62007763	63306005	Intron of CD79B(-): 18bp before exon 3	IGR: 173Kb before RGS9(+)	GRCh37	DELETION	CD79B (NM_001039933)  rearrangement: c.122-18_g.63306005del	PRECISE		MANUAL_OK	3to5	-	1298242	NA	0	17	15	17
P-0015425-T01-IM6	SOMATIC	HLA-DOB	TAP2	6	6	32782007	32803160	Intron of HLA-DOB(-): 90bp after exon 3	Intron of TAP2(-): 24bp before exon 5	GRCh37	INVERSION	TAP2 (NM_018833) Rearrangement : c.643+90:HLA-DOB_c.740-24inv	PRECISE		MANUAL_OK	3to3	-	21153	NA	0	36	35	34
P-0015435-T01-IM6	SOMATIC	RET	CCDC6	10	10	43610969	61633826	Intron of RET(+): 785bp after exon 11	Intron of CCDC6(-): 21Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exon 12): c.304-21366:CCDC6_c.2136+785:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18022857	NA	0	53	60	52
P-0015496-T01-IM6	SOMATIC	ITPR1	PBRM1	3	3	4566397	52598084	Intron of ITPR1(+): 4Kb after exon 4	Exon 24 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) Rearrangement : c.3782:PBRM1_c.163+3619:ITPR1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	48031687	NA	0	65	61	64
P-0015507-T01-IM6	SOMATIC	BRD4	PGLYRP2	19	19	15383681	15587576	Exon 2 of BRD4(-)	Intron of PGLYRP2(-): 157bp before exon 2	GRCh37	INVERSION	BRD4 (NM_058243) Rearrangement : c.230:BRD4_c.62-157:PGLYRP2inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	203895	NA	0	18	22	17
P-0016113-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486482	57492590	Intron of NAB2(+):118bp after exon 3	Exon 18 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exon3 fused to STAT6 exon 18:  c.1091+118:NAB2_c.2051:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	6108	NA	0	116	10	116
P-0016658-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29687628	32416751	Intron of EWSR1(+):40bp after exon 10	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-10 fused to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416751::chr22:g.:29687628)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	101	10	100
P-0016723-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684756	32416298	Exon 9 of EWSR1(+)	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) reciprocal fusion (EWSR1 exons 1-9 fused with WT1 exons 8-10) : t(11;22)(p13;q12.2)(chr11:g.32416338::chr22:g.29684714)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:WT1}	0	NA	0	47	10	97
P-0017563-T01-IM5	SOMATIC	LOC101927915	EPHA7	8	6	138179021	93982172	IGR: 239Kb before LOC101927915(-)	Intron of EPHA7(-):32bp before exon 6	GRCh37	TRANSLOCATION	EPHA7 (NM_004440) rearrangement: t(6;8)(q16.1;q24.23)(chr6:g.93982172::chr8:g.138179021)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	40	10	41
P-0017693-T02-IM6	SOMATIC	KIAA1549	BRAF	7	7	138546697	140489537	Intron of KIAA1549(-):495bp before exon 16	Intron of BRAF(-):2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) Fusion: c.4930-495:KIAA1549_c.1141-2153:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1942840	NA	0	43	10	45
P-0017900-T01-IM6	SOMATIC	ADAMTSL1	CDKN2Ap14ARF	9	9	18389532	21974689	IGR: 85Kb before ADAMTSL1	Intron of CDKN2Ap14ARF before exon 2	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) Rearrangement : chr9:g.18389532_c.317-3482:CDKN2Ap14ARFinv	PRECISE		MANUAL_OK	3 to 3	-	3585157	NA	NA	157	10	NA
P-0017900-T01-IM6	SOMATIC	ADAMTSL1	CDKN2Ap16INK4A	9	9	18389532	21974689	IGR: 85Kb before ADAMTSL1	Exon 1 of CDKN2Ap16INK4A	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) Rearrangement : chr9:g.18389532_c.138:CDKN2Ap16INK4Ainv	PRECISE		MANUAL_OK	3 to 3	-	3585157	NA	NA	157	10	NA
P-0018199-T01-IM6	SOMATIC	POLR2M	RB1	15	13	58071442	48916793	IGR: 73Kb before POLR2M(+)	Exon 3 of RB1(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;15)(q14.2;q21.3)(chr13:g.48916793::chr15:g.58071442)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	22
P-0018687-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12005593	12017814	Intron of ETV6(+):767bp before exon 4	Intron of ETV6(+):5Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.329-768_c.464-4544del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	12221	NA	0	13	10	13
P-0018886-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39861554	42872880	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMRPSS2 exon 1 fused  with ERG exons 2-10): c.56-2764:TMPRSS2_c.18+8733:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011326	NA	0	16	10	17
P-0018886-T01-IM6	SOMATIC	CDC37L1	JAK2	9	9	4697767	5111988	Exon 5 of CDC37L1(+)	Intron of JAK2(+):11Kb before exon 23	GRCh37	DELETION	CDC37L1 (NM_017913) - JAK2 (NM_004972) rearrangement: c.635:CDC37L1_c.3060-11016:JAK2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDC37L1:JAK2}	414221	NA	0	10	10	10
P-0018990-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1615819	1619109	Exon 16 of TCF3(-)	Exon 15 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1450+1_c.1452del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3290	NA	0	4	10	4
P-0019347-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39825311	42872535	Intron of ERG(-):8Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2419:TMPRSS2_c.19-7767:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3047224	NA	0	59	10	66
P-0019366-T01-IM6	SOMATIC	AMER1	EDA2R	X	X	63411269	65987319	Exon 2 of AMER1(-)	IGR: 172Kb before EDA2R(-)	GRCh37	INVERSION	AMER1 (NM_152424) Rearrangement : c.1898:AMER1_chrX:g.65987319inv	PRECISE		MANUAL_OK	5to5	-	2576050	NA	0	11	10	13
P-0019453-T01-IM6	SOMATIC	MAP3K1	PDE4D	5	5	56174783	58722594	Intron of MAP3K1(+):23bp before exon 11	Intron of PDE4D(-):211Kb before exon 4	GRCh37	INVERSION	PDE4D (NM_001104631) - MAP3K1 (NM_005921) rearrangement: c.456-210800:PDE4D_c.1966-24:MAP3K1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PDE4D:MAP3K1}	2547811	NA	0	46	10	57
P-0020159-T01-IM6	SOMATIC	LOC101928622	INPP4B	4	4	34776389	143191905	IGR: 878Kb before LOC101928622(-)	Exon 10 of INPP4B(-)	GRCh37	INVERSION	INPP4B (NM_001101669) rearrangement: chr4:g.34776389_c.526:INPP4Binv	PRECISE		MANUAL_OK	3to3	-	108415516	NA	0	33	10	31
P-0020224-T01-IM6	SOMATIC	RTF1	MGA	15	15	41755366	42041022	Intron of RTF1(+):2Kb before exon 5	Exon 16 of MGA(+)	GRCh37	DUPLICATION	MGA (NM_001164273) - RTF1 (NM_015138) rearrangement: c.5400:MGA_c.663-1603:RTF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MGA:RTF1}	285656	NA	0	4	9	4
P-0020433-T01-IM6	SOMATIC	APC	SRP19	5	5	112176114	112194795	Exon 16 of APC(+)	Promoter of SRP19(+):2Kb from tx start	GRCh37	DELETION	APC (NM_000038) - SRP19 (NM_001204199) Rearrangement : c.4823:APC_c.-2279:SRP19del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	18681	NA	0	2	5	2
P-0020459-T01-IM6	SOMATIC	PCSK5	ABL1	9	9	78504638	133710973	Promoter of PCSK5(+):921bp from tx start	Intron of ABL1(+):61bp after exon 1	GRCh37	INVERSION	ABL1 (NM_005157) rearrangement: chr9:g.78504638_c.79+61:ABL1inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	55206335	NA	0	12	10	12
P-0020479-T01-IM6	SOMATIC	ATRX	PHF6	X	X	76763974	133503915	Exon 35 of ATRX(-)	IGR: 3Kb before PHF6(+)	GRCh37	INVERSION	ATRX (NM_000489) Rearrangement : c.7334:ATRX_chrX:g.133503915del	IMPPRECISE		MANUAL_OK	3to3	-	56739941	NA	0	9	0	9
P-0020574-T01-IM6	SOMATIC	LOC101929694	GSK3B	3	3	112419488	119562276	IGR: 36Kb before LOC101929694(-)	Intron of GSK3B(-):76bp before exon 11	GRCh37	INVERSION	GSK3B (NM_002093) rearrangement: chr3:g.112419488_c.1136-76:GSK3Binv	PRECISE		MANUAL_OK	3to3	-	7142788	NA	0	5	10	4
P-0020582-T01-IM6	SOMATIC	INSR	INSR	19	19	7170794	7190368	Intron of INSR(-):32bp before exon 6	Intron of INSR(-):6Kb before exon 3	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.1269-32_c.653-5720inv	PRECISE		MANUAL_OK	3to3	-	19574	NA	1	272	10	267
P-0020582-T01-IM6	SOMATIC	BRD4	NWD1	19	19	15355127	16870631	Exon 13 of BRD4(-)	Intron of NWD1(+):392bp after exon 7	GRCh37	INVERSION	BRD4 (NM_058243) - NWD1 (NM_001007525) rearrangement: c.2496:BRD4_c.1568+392:NWD1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRD4:NWD1}	1515504	NA	0	46	10	96
P-0020713-T01-IM6	SOMATIC	INSR	CRABP2	19	1	7141703	156675691	Exon 13 of INSR(-)	Promoter of CRABP2(-):6Kb from tx start	GRCh37	TRANSLOCATION	INSR (NM_000208) - CRABP2 (NM_001878) rearrangement: t(1,19)(q23.1,p13.2)(chr1:g.156675691::chr19:c.2667)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {INSR:CRABP2}	0	NA	0	16	10	16
P-0020844-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878848	42868131	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exons 1-2 fused to ERG exons 4-11):c.127-1626:TMPRSS2_c.40-61304:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2989283	NA	0	58	10	59
P-0020844-T01-IM6	SOMATIC	ST7-AS1	BRAF	7	7	116584014	140488129	IGR: 8Kb before ST7-AS1(-)	Intron of BRAF(-):745bp before exon 9	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: g.116584014_c.1141-745inv	PRECISE		MANUAL_OK	3to3	-	23904115	NA	0	52	10	52
P-0020844-T01-IM6	SOMATIC	NUB1	KMT2C	7	7	151053870	151849860	Intron of NUB1(+):562bp after exon 7	Exon 49 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: g.151053870_c.12456del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	795990	NA	0	81	10	95
P-0021673-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39867362	42874055	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-3939:TMPRSS2_c.18+2925:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006693	NA	0	38	10	40
P-0021825-T01-IM6	SOMATIC	JAK1	MIR3671	1	1	65304203	65519163	Exon 21 of JAK1(-)	IGR: 4Kb before MIR3671(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: chr1:g.65519163_c.2912:JAK1del	PRECISE		MANUAL_OK	3to5	-	214960	NA	0	29	10	30
P-0022309-T01-IM6	SOMATIC	MAP3K14	CPSF4L	17	17	43366563	71258690	Intron of MAP3K14(-):38bp after exon 3	Promoter of CPSF4L(-):14Kb from tx start	GRCh37	DELETION	CPSF4L (NM_001129885) - MAP3K14 (NM_003954) Rearrangement : c.-733:CPSF4L_c.326+39:MAP3K14del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {CPSF4L:MAP3K14}	27892127	NA	0	10	0	10
P-0022469-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55096553	55223428	Intron of EGFR(+):9Kb after exon 1	Intron of EGFR(+):94bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+9495_c.890-95del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	126875	NA	0	10	0	236
P-0022596-T03-IM6	SOMATIC	SLC13A2	NF1	17	17	26817169	29508794	Intron of SLC13A2(+):155bp before exon 3	Exon 7 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) -SLC13A2 (NM_001145975) Rearrangement: c.721:NF1_c.232-156:SLC13A2inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2691625	NA	0	17	10	19
P-0022927-T01-IM6	SOMATIC	REV3L	FYN	6	6	111764184	112035756	Intron of REV3L(-):27Kb before exon 3	Intron of FYN(-):110bp before exon 2	GRCh37	DUPLICATION	REV3L (NM_002912) - FYN (NM_153047) rearrangement: c.140-26509:REV3L_c.248-110:FYNdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {REV3L:FYN}	271572	NA	0	22	10	24
P-0022991-T01-IM6	SOMATIC	KEAP1	MIR6731	19	1	10610322	25394534	Exon 2 of KEAP1(-)	IGR: 149Kb before MIR6731(-)	GRCh37	TRANSLOCATION	KEAP1 (NM_203500) Rearrangement : t(1;19)(p35.3;p13.2)(chr1:g.25394534::chr19:g.10610322)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	17	10	23
P-0023210-T01-IM6	SOMATIC	LINC01231	PTPRD	9	9	3202395	8485289	Promoter of LINC01231(+):21Kb from tx start	Exon 29 of PTPRD(-)	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: chr9:g.3202395_c.3091inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LINC01231:PTPRD}	5282894	NA	0	17	0	16
P-0023370-T01-IM6	SOMATIC	ABTB2	PAK1	11	11	34225837	77069957	Intron of ABTB2(-):253bp after exon 2	Exon 6 of PAK1(-)	GRCh37	DUPLICATION	ABTB2 (NM_145804) - PAK1 (NM_002576) rearrangement: c.1030+254:ABTB2_c.583PAK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ABTB2:PAK1}	42844120	NA	0	4	10	4
P-0023930-T01-IM6	SOMATIC	BRCA2	KL	13	13	32915499	33601330	Intron of BRCA2(+):166bp after exon 11	Intron of KL(+):10Kb after exon 1	GRCh37	DELETION	BRCA2 (NM_000059) - KL (NM_004795) rearrangement: c.6841+166:BRCA2_c.819+9933:KLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BRCA2:KL}	685831	NA	0	33	10	34
P-0023930-T01-IM6	SOMATIC	TMPRSS2	DYM	21	18	42874721	46767863	Intron of TMPRSS2(-):5Kb before exon 2	Intron of DYM(-):16Kb after exon 13	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(18;21)(q21.1;q22.3)(chr18:g.46767863::chr21:g.42874721)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	91	10	99
P-0023985-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111880921	111884523	5-UTR of BCL2L11(+):401bp before coding start	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.-13-389_c.394+2807del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3602	NA	0	17	10	18
P-0024231-T01-IM6	SOMATIC	MEF2D	NTRK1	1	1	156442992	156845756	Intron of MEF2D(-):2Kb after exon 8	Intron of NTRK1(+):115bp before exon 13	GRCh37	INVERSION	NTRK1 (NM_002529) - MEF2D (NM_005920) rearrangement: c.1502-116:NTRK1_c.1006+1908:MEF2Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NTRK1:MEF2D}	402764	NA	0	112	10	121
P-0024463-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739066	1808801	Intron of TACC3(+):11bp after exon 9	Intron of FGFR3(+):41bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused in-frame with TACC3 exons 10-16):c.2275-42:FGFR3_c.1836+11:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69735	NA	0	21	10	22
P-0024504-T01-IM6	SOMATIC	BLM	ADSSL1	15	14	91352504	105200985	Intron of BLM(+):15bp after exon 20	Intron of ADSSL1(+):371bp before exon 2	GRCh37	TRANSLOCATION	BLM (NM_000057) - ADSSL1 (NM_199165) rearrangement: t(14;15)(q32.33;q26.1)(chr14:g.105200985::chr15:g.91352504)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BLM:ADSSL1}	0	NA	0	63	10	69
P-0024944-T01-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2488188	2489541	Intron of TNFRSF14(+):16bp after exon 1	Intron of TNFRSF14(+):240bp before exon 3	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.69+16_c.179-241inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1353	NA	0	4	0	4
P-0024944-T01-IM6	SOMATIC	BAP1	PBRM1	3	3	52443333	52620675	Intron of BAP1(-):236bp after exon 3	Exon 21 of PBRM1(-)	GRCh37	DUPLICATION	BAP1 (NM_004656) - PBRM1 (NM_018313) rearrangement: c.122+237:BAP1_c.3078:PBRM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BAP1:PBRM1}	177342	NA	0	25	10	25
P-0024944-T01-IM6	SOMATIC	TRAPPC9	AGO2	8	8	141447319	141557583	Intron of TRAPPC9(-):2Kb after exon 3	Exon 13 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.1732:AGO2_c.1024+1832:TRAPPC9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AGO2:TRAPPC9}	110264	NA	0	8	10	8
P-0025039-T02-IM6	SOMATIC	ARID1B	SERAC1	6	6	157528305	158540836	Exon 20 of ARID1B(+)	Intron of SERAC1(-):620bp after exon 11	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5856:ARID1B_chr6:g.158540836del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1012531	NA	0	2	10	2
P-0025052-T01-IM6	SOMATIC	CCDC171	TEK	9	9	15635941	27203090	Intron of CCDC171(+):13Kb after exon 7	Exon 13 of TEK(+)	GRCh37	DUPLICATION	TEK (NM_000459) - CCDC171 (NM_173550) Rearrangement :  c.2182:TEK_c.822+12530:CCDC171dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TEK:CCDC171}	11567149	NA	0	16	10	19
P-0025191-T01-IM6	SOMATIC	CALCR	EZH2	7	7	93075792	148506615	Intron of CALCR(-):3Kb before exon 8	Intron of EZH2(-):133bp before exon 18	GRCh37	DUPLICATION	CALCR (NM_001742) - EZH2 (NM_004456) rearrangement: c.649-2723:CALCR_c.2030-133:EZH2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CALCR:EZH2}	55430823	NA	0	13	10	16
P-0025191-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55201925	55222687	Intron of EGFR(+):8Kb before exon 2	Intron of EGFR(+):835bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-8054_c.890-836del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20762	NA	0	163	10	222
P-0025191-T02-IM6	SOMATIC	EGFR	SEPT14	7	7	55269542	55867181	Intron of EGFR(+):67bp after exon 26	Intron of SEPT14(-):3Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion: c.3162+67:EGFR_c.1120-3396:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	597639	NA	0	63	10	88
P-0025191-T02-IM6	SOMATIC	CALCR	EZH2	7	7	93075792	148506615	Intron of CALCR(-):3Kb before exon 8	Intron of EZH2(-):133bp before exon 18	GRCh37	DUPLICATION	CALCR (NM_001742) - EZH2 (NM_004456) rearrangement: c.649-2723:CALCR_c.2030-133:EZH2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CALCR:EZH2}	55430823	NA	0	16	10	16
P-0025446-T01-IM6	SOMATIC	CREBBP	SRL	16	16	3900369	4175081	Exon 2 of CREBBP(-)	IGR: 64Kb before SRL(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.727:CREBBP_chr16:g.4175081del	PRECISE		MANUAL_OK	3to5	-	274712	NA	0	32	10	34
P-0025489-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25459877	25463170	Intron of DNMT3A(-):3bp before exon 21	Exon 19 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552) Rearrangement : c.2322+1_c.2409-3del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3293	NA	0	6	0	6
P-0025690-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32912551	32940137	Exon 11 of BRCA2(+)	Intron of BRCA2(+):2Kb after exon 18	GRCh37	DUPLICATION	BRCA2 (NM_000059) rearrangement: c.4059_c.8331+2467dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	27586	NA	0	14	10	14
P-0026232-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11093501	11098556	5-UTR of SMARCA4(+):1Kb before coding start	Exon 6 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.-31-1296_c.1074dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5055	NA	0	11	10	12
P-0026232-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111908419	111921717	Intron of BCL2L11(+):695bp after exon 3	Exon 4 of BCL2L11(+)	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.498+695_c.506del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13298	NA	0	20	10	22
P-0026232-T01-IM6	SOMATIC	FAM58A	FAM58A	X	X	152861579	152862275	Exon 2 of FAM58A(-)	Intron of FAM58A(-):630bp before exon 2	GRCh37	DUPLICATION	FAM58A (NM_152274) rearrangement: c.111-630_c.177dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	696	NA	0	13	10	13
P-0026238-T01-IM6	SOMATIC	TP53	TP53	17	17	7576881	7577848	Exon 9 of TP53(-)	Intron of TP53(-):240bp before exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.673-240_c.965del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	967	NA	0	2	10	3
P-0026238-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856605	42875622	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.55+4255:TMPRSS2_c.18+13682:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019017	NA	0	30	10	30
P-0026384-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47139375	47145741	Intron of SETD2(-):69bp after exon 9	Intron of SETD2(-):828bp before exon 7	GRCh37	DUPLICATION	SETD2 (NM_014159) Rearrangement : c.4840-828_5142+70dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	6366	NA	0	5	10	5
P-0026439-T01-IM6	SOMATIC	AKT1	AKT1	14	14	105239083	105242863	Intron of AKT1(-):131bp after exon 11	Intron of AKT1(-):132bp after exon 4	GRCh37	DUPLICATION	AKT1 (NM_001014431): c.1172+132_c.287+133dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : in frame	3780	NA	1	18	10	18
P-0026439-T01-IM6	SOMATIC	LINC00879	TP63	3	3	94492521	189585547	IGR: 165Kb before LINC00879(+)	Intron of TP63(+):74bp before exon 7	GRCh37	DELETION	TP63 (NM_003722):c.883-75del_g.94492521 (Note2)	IMPPRECISE		MANUAL_OK	3to5	-	95093026	NA	0	5	0	5
P-0026615-T02-IM6	SOMATIC	PAK1	NRG1	11	8	77036046	32259693	Intron of PAK1(-):2Kb before exon 15	Intron of NRG1(+):194Kb before exon 2	GRCh37	TRANSLOCATION	PAK1 (NM_002576) Rearrangement: t(8;11)(p12;q13.5)(chr8:g.32259693::chr11:g.77036046)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	6	7	5
P-0026852-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38043674	38061908	IGR: 15Kb before FOXA1(-)	Exon 2 of FOXA1(-)	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.81_chr14:g.38043674del	PRECISE		MANUAL_OK	3to3	-	18234	NA	0	15	10	15
P-0026852-T01-IM6	SOMATIC	BRIP1	TNRC6C	17	17	59793483	76093212	Intron of BRIP1(-):59bp before exon 17	Intron of TNRC6C(+):613bp before exon 18	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.2380-59_chr17:g.76093212del	PRECISE		MANUAL_OK	3to5	-	16299729	NA	0	9	10	10
P-0027738-T01-IM6	SOMATIC	DNMT3B	BPIFA4P	20	20	31381442	31801054	Intron of DNMT3B(+):41bp after exon 10	Promoter of BPIFA4P(+):20Kb from tx start	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.1126+41:DNMT3B_chr20:g.31801054del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DNMT3B:BPIFA4P}	419612	NA	0	12	10	12
P-0028258-T01-IM6	SOMATIC	C11orf30	PAK1	11	11	76259831	77048404	Intron of C11orf30(+):1Kb before exon 21	Exon 12 of PAK1(-)	GRCh37	DUPLICATION	PAK1 (NM_002576) rearrangement: c.1181_chr11:g.76259831dup	PRECISE		MANUAL_OK	5to3	-	788573	NA	0	36	10	43
P-0028298-T01-IM6	SOMATIC	TERT	ADAMTS16	5	5	1295341	5142258	Promoter of TERT(-):42Kb from tx start	Intron of ADAMTS16(+):1Kb after exon 2	GRCh37	INVERSION	ADAMTS16 (NM_139056) - TERT (NM_198253) rearrangement: c.175+1379C:ADAMTS16_c.-237:TERTinv	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {ADAMTS16:TERT}	3846917	NA	0	71	0	70
P-0028347-T01-IM6	SOMATIC	NAB2	MGAT4C	12	12	57486329	86871854	Exon 3 of NAB2(+)	5-UTR of MGAT4C(-):499Kb before coding start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1056:NAB2_chr12:g.86871854inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:MGAT4C}	29385525	NA	0	441	10	451
P-0028347-T01-IM6	SOMATIC	IRF4	LINC01108	6	6	393309	14202222	Exon 2 of IRF4(+)	IGR: 78Kb before LINC01108(-)	GRCh37	INVERSION	IRF4 (NM_002460) rearrangement: c.157:IRF4_chr6:g.14202222inv	PRECISE		MANUAL_OK	3to3	-	13808913	NA	0	8	9	8
P-0028538-T01-IM6	SOMATIC	PAX9	FOXA1	14	14	37105233	38060876	IGR: 22Kb before PAX9(+)	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	FOXA1 (NM_004496) rearrangement: c.1113:FOXA1_chr14:g.37105233dup	IMPPRECISE		MANUAL_OK	5to3	-	955643	NA	0	6	0	6
P-0028873-T01-IM6	SOMATIC	SNRPB2	CIC	20	19	16722294	42799251	3-UTR of SNRPB2(+):10Kb after coding stop	Exon 20 of CIC(+)	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(19;20)(q13.2;p12.1)(chr19:g.42799251::chr20:g.16722294)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	41	10	67
P-0028901-T01-IM6	SOMATIC	ALK	EML4	2	2	29446607	42527537	Intron of ALK(-):213bp before exon 20	Intron of EML4(+):843bp before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1316-844:EML4_c.3173-213:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080930	NA	0	53	10	52
P-0029163-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39914571	42870139	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):23bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.56-23:TMPRSS2_c.39+33015:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2955568	NA	0	50	10	52
P-0029163-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591110	67596143	Exon 13 of PIK3R1(+)	3-UTR of PIK3R1(+):74Kb after coding stop	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1703:PIK3R1_chr5:g.67596143del	PRECISE		MANUAL_OK	3to5	-	5033	NA	0	8	10	7
P-0029377-T01-IM6	SOMATIC	LOC90768	FAT1	4	4	182710429	187540248	IGR: 349Kb before LOC90768(-)	Exon 10 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.7492:FAT_chr4:g.182710429inv	PRECISE		MANUAL_OK	5to5	-	4829819	NA	0	6	10	12
P-0029753-T01-IM6	SOMATIC	TSC2	RAP1GAP	16	1	2127672	21994016	Exon 26 of TSC2(+)	5-UTR of RAP1GAP(-):70Kb before coding start	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(1;16)(p36.12;p13.3)(chr1:g.21994016:chr16:g.2127672)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	47	10	48
P-0029753-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	39059063	39074440	Intron of RICTOR(-):15Kb after exon 2	Exon 1 of RICTOR(-)	GRCh37	DUPLICATION	RICTOR (NM_152756) rearrangement: c.40_c.97+15150dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15377	NA	0	43	10	46
P-0029811-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62318800	62321480	Intron of RTEL1(+):190bp before exon 17	Exon 25 of RTEL1(+)	GRCh37	INVERSION	RTEL1 (NM_032957) Rearrangement: c.1421-191_c.2254inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2680	NA	0	17	10	17
P-0029811-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39852454	42871857	Intron of ERG(-):18Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 2 fused to ERG exons 2-10): c.56-1741:TMPRSS2_c.18+17833:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019403	NA	0	24	10	25
P-0030003-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3786117	3896565	Exon 28 of CREBBP(-)	Intron of CREBBP(-):4Kb after exon 2	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.4648_c.798+3733dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	110448	NA	0	52	10	54
P-0030003-T01-IM6	SOMATIC	MAP3K14	MAP3K14	17	17	43364689	43374738	Exon 4 of MAP3K14(-)	5-UTR of MAP3K14(-):33Kb before coding start	GRCh37	DELETION	MAP3K14 (NM_003954) rearrangement: c.368_c.-20-6607del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10049	NA	0	18	10	18
P-0030101-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55203203	55223182	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):340bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-6776_c.890-341del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	19979	NA	0	72	0	286
P-0030124-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148461917	148512564	Intron of CUL1(+):2Kb before exon 8	Intron of EZH2(-):33bp after exon 13	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.1546+34:EZH2_chr7:g.148461917del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	50647	NA	0	12	10	13
P-0030212-T01-IM6	SOMATIC	RAD51C	NRG1	17	8	56787249	31994096	Exon 5 of RAD51C(+)	Intron of NRG1(+):459Kb before exon 2	GRCh37	TRANSLOCATION	NRG1 (NM_013956) - RAD51C (NM_058216) rearrangement: t(8;17)(p12;q22)(chr8:g.31994096::chr17:g.56787249)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NRG1:RAD51C}	0	NA	0	24	10	24
P-0030301-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43778153	43784527	Intron of TP53BP1(-):5Kb before exon 5	Exon 2 of TP53BP1(-)	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: c.372-4933_c.147inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6374	NA	0	42	10	54
P-0030301-T03-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43778153	43784527	Intron of TP53BP1(-):5Kb before exon 5	Exon 2 of TP53BP1(-)	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: c.147_c.372-4933inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6374	NA	0	85	10	99
P-0030305-T01-IM6	SOMATIC	SESN3	PDE11A	11	2	94917667	178814762	Exon 6 of SESN3(-)	Intron of PDE11A(-):45Kb before exon 3	GRCh37	TRANSLOCATION	PDE11A (NM_016953) - SESN3 (NM_144665) rearrangement: t(2;11)(q31.2;q21)(chr2:g.178814762::chr11:g.94917667)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PDE11A:SESN3}	0	NA	0	6	10	6
P-0030590-T01-IM6	SOMATIC	ALK	EML4	2	2	29447704	42482480	Intron of ALK(-):622bp after exon 19	Intron of EML4(+):1Kb before exon 3	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-2 fused with ALK exons 20-29): c.494-5628:EML4_c.3173-350:ALKinv.	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13034776	NA	0	119	10	124
P-0030692-T01-IM6	SOMATIC	NBN	TMEM74	8	8	90982629	109929895	Exon 7 of NBN(-)	IGR: 135Kb before TMEM74(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.859:NBN_chr8:g.109929895inv	PRECISE		MANUAL_OK	5to5	-	18947266	NA	0	6	10	6
P-0030777-T01-IM6	SOMATIC	NTRK2	COL5A1	9	9	87317392	137718682	Intron of NTRK2(+):58bp after exon 6	Intron of COL5A1(+):932bp after exon 63	GRCh37	DELETION	NTRK2 (NM_006180) - COL5A1 (NM_000093) rearrangement: c.359+58:NTRK2_c.5067+932:COL5A1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NTRK2:COL5A1}	50401290	NA	0	17	10	18
P-0030827-T01-IM6	SOMATIC	SOX17	GPLD1	8	6	55371727	24455221	Exon 2 of SOX17(+)	Intron of GPLD1(-):792bp before exon 14	GRCh37	TRANSLOCATION	SOX17 (NM_022454) - GPLD1 (NM_001503) rearrangement: t(6;8)(p22.3;q11.23)(chr6:g.24455221::chr8:g.55371727)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SOX17:GPLD1}	0	NA	0	37	10	39
P-0030979-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3790539	3885675	Exon 24 of CREBBP(-)	Intron of CREBBP(-):15Kb after exon 2	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.798+14623_c.3994del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	95136	NA	0	36	10	44
P-0031048-T01-IM6	SOMATIC	GLI1	DNAH10	12	12	57863504	124256596	Intron of GLI1(+):23bp after exon 11	Intron of DNAH10(+):351bp after exon 3	GRCh37	DELETION	GLI1 (NM_005269) - DNAH10(NM_207437) Rearrangement: c.1576+23:GLI1_c.213+351:DNAH10del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {GLI1:DNAH10}	66393092	NA	0	7	10	8
P-0031048-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39953552	42866350	3-UTR of ERG(-):80Kb after coding stop	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-3 fused to ERG exons 3-11): c.282:TMPRSS2_-48+3216:ERG	PRECISE		MANUAL_OK	3to5	-	2912798	NA	0	45	10	47
P-0031505-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38270523	38279276	3-UTR of FGFR1(-):622bp after coding stop	Intron of FGFR1(-):38bp after exon 9	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1174+39:FGFR1_chr8:g.38270523del	PRECISE		MANUAL_OK	3to5	-	8753	NA	0	8	10	9
P-0031505-T02-IM6	SOMATIC	FGFR1	FGFR1	8	8	38270523	38279276	3-UTR of FGFR1(-):622bp after coding stop	Intron of FGFR1(-):38bp after exon 9	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1174+39:FGFR1_chr8:g.38270523del	PRECISE		MANUAL_OK	3to5	-	8753	NA	0	14	10	14
P-0031599-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39843704	42875715	Intron of ERG(-):26Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4162:TMPRSS2_c.19-26160:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3032011	NA	2	21	10	20
P-0031661-T01-IM6	SOMATIC	ALK	EML4	2	2	29447497	42528093	Intron of ALK(-):829bp after exon 19	Intron of EML4(+):287bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-288:EML4_c.3172+830:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080596	NA	0	5	9	5
P-0031666-T01-IM6	SOMATIC	MTIF3	FLT3	13	13	28028510	28607891	IGR: 19Kb before MTIF3(-)	Intron of FLT3(-):132bp after exon 15	GRCh37	INVERSION	FLT3 (NM_004119) rearrangement: c.1942+133:FLT3_chr13:g.28028510inv	PRECISE		MANUAL_OK	5to5	-	579381	NA	0	23	10	23
P-0031896-T02-IM6	SOMATIC	MKRN1	BRAF	7	7	140157684	140482581	Intron of MKRN1(-):1Kb before exon 5	Intron of BRAF(-):239bp after exon 10	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) fusion (MKRN1 exons 1-4 fused to BRAF exons 11-18): c.772-1018:MKRN1_c.1314+240:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MKRN1:BRAF}	324897	NA	0	92	10	100
P-0032161-T02-IM6	SOMATIC	ARID1B	ARID1B	6	6	157375234	157517426	Intron of ARID1B(+):31Kb before exon 6	Exon 16 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2038-30562:c.3990del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	142192	NA	0	6	10	6
P-0032228-T01-IM6	SOMATIC	PBX2	NOTCH4	6	6	32156661	32166887	Intron of PBX2(-):88bp before exon 2	Exon 24 of NOTCH4(-)	GRCh37	DUPLICATION	PBX2 (NM_002586) - NOTCH4 (NM_004557) rearrangement: c.222-88:PBX2_c.4351:NOTCH4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PBX2:NOTCH4}	10226	NA	0	8	10	8
P-0032329-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29686632	51200627	Intron of EWSR1(+):921bp before exon 10	Intron of ATF1(+):3Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - ATF1 (NM_005171) Fusion (EWSR1 exons 1-8 fused with ATF1 exons 4-7) : t(12;22)(q13.13;q12)(chr12:g.51200627::chr22:g.29686632)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	48	10	49
P-0032381-T01-IM6	SOMATIC	MAP3K11	FGF4	11	11	65380550	69588796	Exon 1 of MAP3K11(-)	Exon 2 of FGF4(-)	GRCh37	DUPLICATION	MAP3K11 (NM_002419) - FGF4 (NM_002007) Rearrangement:  c.678:MAP3K11_c.440:FGF4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAP3K11:FGF4}	4208246	NA	0	11	10	11
P-0032409-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29688134	51197338	Exon 11 of EWSR1(+)	Intron of ATF1(+):6Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-11 fused to ATF1 exons 4-7): t(12;22)(q13.12;q12.2)(chr12:g.51197338::chr22:g.29688134)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:ATF1}	0	NA	0	32	10	31
P-0032490-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39550400	39616448	Exon 4 of PIK3C3(+)	Intron of PIK3C3(+):1Kb before exon 17	GRCh37	INVERSION	PIK3C3 (NM_002647) Rearrangement : c.511_c.1840-1208inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	66048	NA	0	22	10	22
P-0032499-T02-IM6	SOMATIC	RIT1	HHAT	1	1	155880825	210771585	5-UTR of RIT1(-):11Kb before coding start	Intron of HHAT(+):10Kb after exon 9	GRCh37	DELETION	RIT1 (NM_006912) Rearrangement : c.-44+209:RIT_c.1245+10142:HHAT1del	IMPPRECISE		MANUAL_OK	3to5	-	54890760	NA	0	11	0	11
P-0032509-T01-IM6	SOMATIC	ADAM30	NOTCH2	1	1	120429394	120480504	IGR: 7Kb before ADAM30(-)	Exon 20 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) Rearrangement : chr1:g.120429394_c.3313:NOTCH2del	PRECISE		MANUAL_OK	3to5	-	51110	NA	0	28	10	28
P-0032512-T01-IM6	SOMATIC	DICER1	CLMN	14	14	95581905	95689051	Intron of DICER1(-):98bp after exon 13	Intron of CLMN(-):940bp before exon 4	GRCh37	DUPLICATION	DICER1(NM_030621) - CLMN (NM_024734) Rearrangement : c.1907+99:DICER1_c.241-940:CLMNdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DICER1:CLMN}	107146	NA	0	8	10	8
P-0032543-T01-IM6	SOMATIC	RB1	RB1	13	13	48910205	48941703	Intron of RB1(+):7Kb before exon 3	Exon 10 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.265-6530_c.1013del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31498	NA	0	15	10	15
P-0032569-T01-IM6	SOMATIC	TRIM24	BRAF	7	7	138256539	140487936	Intron of TRIM24(+):791bp after exon 11	Intron of BRAF(-):552bp before exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) Rearrangement : c.1878+791:TRIM24_c.1141-552inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2231397	NA	0	57	10	55
P-0032573-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39878368	42868708	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon2 fused with ERG exon4: c.126+133:TMPRSS2_c.40-60824:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2990340	NA	0	7	10	8
P-0032595-T01-IM6	SOMATIC	STAT5A	LINC00671	17	17	40453350	41043776	Exon 10 of STAT5A(+)	3-UTR of LINC00671(-):7Kb after coding stop	GRCh37	DUPLICATION	STAT5A (NM_003152) rearrangement: c.1047:STAT5A_chr17:g.41043776dup	PRECISE		MANUAL_OK	5to3	-	590426	NA	0	22	10	28
P-0032603-T01-IM6	SOMATIC	NF1	NF1	17	17	29684395	29685946	Intron of NF1(+):8bp after exon 54	Intron of NF1(+):40bp before exon 56	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.7970+8_c.8114-41inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1551	NA	0	2	7	2
P-0032604-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268771	55864989	Intron of EGFR(+):109bp before exon 25	Intron of SEPT14(-):1Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion :  c.2947-110:EGFR_c.1120-1204:SEPT14	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	596218	NA	0	140	10	141
P-0032607-T01-IM6	SOMATIC	POLE	PGAM5	12	12	133240846	133288592	Intron of POLE(-):109bp after exon 22	Intron of PGAM5(+):939bp after exon 1	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.2561+110:POLE_chr12:g.133288592del	PRECISE		MANUAL_OK	3to5	-	47746	NA	0	11	10	11
P-0032607-T01-IM6	SOMATIC	ZNF598	NTHL1	16	16	2056154	2090241	Intron of ZNF598(-):2Kb before exon 4	Intron of NTHL1(-):2bp before exon 5	GRCh37	INVERSION	NTHL1 (NM_002528) rearrangement: c.710-2:NTHL1_chr16:g.2056154inv	IMPPRECISE		MANUAL_OK	3to3	-	34087	NA	0	18	0	18
P-0032610-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685790	128644868	Intron of EWSR1(+):1Kb after exon 9	Intron of FLI1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128644868::chr22:g.29685790)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	10	10	10
P-0032614-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3784130	3786498	Intron of CREBBP(-):2Kb after exon 28	Intron of CREBBP(-):152bp after exon 27	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.4560+153_c.4728+1907del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2368	NA	0	2	4	2
P-0032637-T01-IM6	SOMATIC	SLC9A3R2	TSC2	16	16	2085883	2103399	Intron of SLC9A3R2(+):441bp before exon 3	Exon 4 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) - SLC9A3R2 (NM_001130012) Rearrangement : c.282:TSC2_c.415-442:SLC9A3R2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSC2:SLC9A3R2}	17516	NA	0	131	10	140
P-0032637-T01-IM6	SOMATIC	PARD6G	EZH2	18	7	78016098	148506395	IGR: 101Kb before PARD6G(-)	Intron of EZH2(-):6bp after exon 18	GRCh37	TRANSLOCATION	EZH2 (NM_004456) Rearrangement : t(7,18)(q36.1,q23)(chr7:g.148506395::chr18:g.78016098)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	36	10	53
P-0032640-T01-IM6	SOMATIC	NIPBL	RICTOR	5	5	37006627	38963002	Exon 17 of NIPBL(+)	Exon 17 of RICTOR(-)	GRCh37	INVERSION	RICTOR (NM_152756) - NIPBL (NM_133433) Rearrangement : c.1542:RICTOR_c.4024:NIPBLinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RICTOR:NIPBL}	1956375	NA	0	32	0	41
P-0032719-T01-IM6	SOMATIC	PRDM11	MRE11A	11	11	45134388	94169048	5-UTR of PRDM11(+):112Kb before coding start	Exon 18 of MRE11A(-)	GRCh37	INVERSION	MRE11A (NM_005591) rearrangment: chr11:g.45134388_c.1944:MRE11Ainv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRDM11:MRE11A}	49034660	NA	0	22	10	22
P-0032721-T01-IM6	SOMATIC	FBRSL1	POLE	12	12	133117647	133249816	Intron of FBRSL1(+):7Kb before exon 5	Exon 14 of POLE(-)	GRCh37	DUPLICATION	POLE (NM_006231) rearrangement: chr12:g/133117647_c.1407:POLEdup	PRECISE		MANUAL_OK	5to3	-	132169	NA	0	26	10	32
P-0032722-T01-IM6	SOMATIC	ROS1	CD74	6	5	117645677	149782874	Intron of ROS1(-):99bp before exon 34	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944 ) fusion (CD74 exons 1-7 fused to ROS1 exons 34-43):  t(5;6)(q32;q22.1)(chr5:g.149782874::chr6:g.117645677)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	183	10	190
P-0032728-T01-IM6	SOMATIC	EZH1	BCAS3	17	17	40865267	59071515	Exon 11 of EZH1(-)	Intron of BCAS3(+):4Kb after exon 15	GRCh37	INVERSION	EZH1 (NM_001991) - BCAS3 (NM_001099432) rearrangement:  c.1164:EZH1_c.1486+3919:BCAS3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {EZH1:BCAS3}	18206248	NA	0	49	10	64
P-0032745-T01-IM6	SOMATIC	RGS7	FH	1	1	241041911	241671722	Intron of RGS7(-):8Kb before exon 5	Intron of FH(-):180bp after exon 5	GRCh37	DELETION	FH (NM_000143) - RGS7 (NM_002924) rearrangement:  c.738+181:FH_c.386-8492:RGS7del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FH:RGS7}	629811	NA	0	27	10	28
P-0032745-T01-IM6	SOMATIC	PDZRN4	BAP1	12	3	41663465	52440343	Intron of PDZRN4(+):75Kb after exon 3	Exon 9 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) - PDZRN4 (NM_001164595) rearrangement: t(3;12)(p21.2;q12)(chr3:g.52440343::chr12:g.41663465)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BAP1:PDZRN4}	0	NA	0	61	10	68
P-0032748-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30069041	30101511	Intron of PRKD1(-):18bp before exon 14	Intron of PRKD1(-):563bp after exon 9	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.1392+564_c.1906-18del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	32470	NA	0	10	10	10
P-0032753-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316033	43610925	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):741bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1323:KIF5B_c.2136+741:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294892	NA	0	84	10	91
P-0032753-T01-IM6	SOMATIC	PISRT1	ATR	3	3	138900546	142177877	IGR: 51Kb before PISRT1(-)	Exon 44 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.7426:ATR_chr3:g.138900546del	PRECISE		MANUAL_OK	3to5	-	3277331	NA	0	22	10	22
P-0032753-T01-IM6	SOMATIC	PRKCI	ZMAT3	3	3	169999339	178665442	Intron of PRKCI(+):288bp after exon 10	IGR: 70Kb before ZMAT3(-)	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.980+288:PRKCI_chr3:g.178665442del	IMPPRECISE		MANUAL_OK	3to5	-	8666103	NA	0	11	0	11
P-0032785-T02-IM6	SOMATIC	NF1	NF1	17	17	29559381	29560852	Intron of NF1(+):174bp after exon 25	Intron of NF1(+):621bp after exon 27	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.3314+174_c.3708+621del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1471	NA	0	7	10	10
P-0032785-T02-IM6	SOMATIC	CDKN2A-AS1	CDKN2B	9	9	21889967	22006063	IGR: 77Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.340:CDKN2B_chr9:g.21889967	PRECISE		MANUAL_OK	3to5	-	116096	NA	0	63	10	71
P-0032799-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39886155	42879062	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):814bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11): c.55+815:TMPRSS2_c.39+61431:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992907	NA	0	36	10	36
P-0032808-T01-IM6	SOMATIC	PHRF1	MSH2	11	2	601500	47630597	Intron of PHRF1(+):73bp before exon 10	Intron of MSH2(+):56bp after exon 1	GRCh37	TRANSLOCATION	MSH2 (NM_000251) rearrangement: t(2;11)(p21;p15.5)(chr2:g.47630597::chr11:g.601500)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	18	10	17
P-0032808-T01-IM6	SOMATIC	DTX1	RECQL4	12	8	113495287	145741889	Promoter of DTX1(+):374bp from tx start	Exon 5 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(8;12)(q24.3;q24.13)(chr8:g.145741889::chr12:g.113495287)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	26
P-0032808-T01-IM6	SOMATIC	EYA2	NCOA3	20	20	45784826	46264899	Intron of EYA2(+):13Kb before exon 11	Exon 12 of NCOA3(+)	GRCh37	DUPLICATION	NCOA3 (NM_181659) - EYA2 (NM_005244) rearrangement: c.1769:NCOA3_c.979-12961:EYA2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOA3:EYA2}	480073	NA	0	14	10	19
P-0032808-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143094955	143384539	Exon 16 of INPP4B(-)	5-UTR of INPP4B(-):435Kb before coding start	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.-190-660_c.1189del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	289584	NA	0	46	10	48
P-0032827-T01-IM6	SOMATIC	APC	SRP19	5	5	112176002	112200782	Exon 16 of APC(+)	Intron of SRP19(+):353bp after exon 4	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4711:APC_chr5:g.112200782del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	24780	NA	0	4	10	4
P-0032828-T01-IM6	SOMATIC	RAD50	KIF3A	5	5	131915115	132029280	Exon 4 of RAD50(+)	3-UTR of KIF3A(-):3Kb after coding stop	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.472:RAD50_chr5:g.132029280del	PRECISE		MANUAL_OK	3to5	-	114165	NA	0	50	10	51
P-0032851-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2210437	2223140	Exon 13 of DOT1L(+)	Intron of DOT1L(+):139bp before exon 25	GRCh37	DUPLICATION	DOT1L (NM_032482) Rearrangement : c.1044_c.3391-140dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	12703	NA	0	35	0	36
P-0032895-T01-IM6	SOMATIC	DDR2	LINC01363	1	1	162737190	167123216	Intron of DDR2(+):41bp after exon 11	IGR: 21Kb before LINC01363(-)	GRCh37	DELETION	DDR2 (NM_006182) rearrangement: c.1293+41:DDR2_chr1:g.167123216del	IMPPRECISE		MANUAL_OK	3to5	-	4386026	NA	0	12	0	12
P-0032895-T01-IM6	SOMATIC	APC	APC	5	5	112117394	112154969	Intron of APC(+):794bp after exon 6	Exon 10 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.645+794_c.1240del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37575	NA	0	39	10	40
P-0032909-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683182	32416950	Intron of EWSR1(+):59bp after exon 8	Intron of WT1(-):852bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416950::chr22:g.29683182)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	137	10	152
P-0032949-T01-IM6	SOMATIC	IKBKE	SMYD2	1	1	206653507	214506738	Intron of IKBKE(+):51bp after exon 12	Intron of SMYD2(+):804bp before exon 11	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement: c.1340+51:IKBKE_chr1:g.214506738inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7853231	NA	0	14	10	14
P-0032949-T01-IM6	SOMATIC	NBPF22P	IKBKE	5	1	84458674	206669470	IGR: 1Mb before NBPF22P(+)	Exon 22 of IKBKE(+)	GRCh37	TRANSLOCATION	IKBKE (NM_014002) rearrangement: t(1;5)(q14.3;q32.1)(chr5:g.84458674::chr1:g.206669470)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	26	10	26
P-0032962-T01-IM6	SOMATIC	CAPN12	AKT2	19	19	39236036	40740721	Promoter of CAPN12(-):15Kb from tx start	Intron of AKT2(-):230bp after exon 13	GRCh37	INVERSION	AKT2 (NM_001626) Rearrangement: c.1366+231:AKT2_chr19:g.39236036inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1504685	NA	0	107	10	120
P-0032982-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138537119	140491506	Intron of KIAA1549(-):104bp before exon 17	Intron of BRAF(-):3Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) Fusion (KIAA1549 exons 1-16 fused with BRAF exons 9-18 ) : c.5248-10:KIAA1549_c.1140+2602:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1954387	NA	0	21	10	22
P-0032998-T01-IM6	SOMATIC	NCOR1	CUX1	17	7	15983467	101708544	Intron of NCOR1(-):89bp before exon 26	Intron of CUX1(+):5Kb before exon 4	GRCh37	TRANSLOCATION	CUX1 (NM_181552) - NCOR1 (NM_006311) rearrangement: t(7;17)(q21.1;p11.2)(chr7:g.101708544::chr17:g.15983467)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CUX1:NCOR1}	0	NA	0	26	10	26
P-0032998-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135774466	135776873	Intron of TSC1(-):1Kb before exon 21	Intron of TSC1(-):102bp after exon 19	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.2502+103_c.2626-1469del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2407	NA	0	32	10	32
P-0033012-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430452	78435051	Intron of FUBP1(-):20bp before exon 10	Intron of FUBP1(-):557bp after exon 2	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.211+558_c.736-20del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	4599	NA	0	11	10	11
P-0033012-T02-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430452	78435051	Intron of FUBP1(-):20bp before exon 10	Intron of FUBP1(-):557bp after exon 2	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.211+558_c.736-20del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	4599	NA	0	33	10	34
P-0033014-T01-IM6	SOMATIC	PIK3C2G	PLEKHA5	12	12	18699410	19167330	Intron of PIK3C2G(+):44bp after exon 25	IGR: 115Kb before PLEKHA5(+)	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.3467+44:PIK3C2G_chr12:g.19167330del	PRECISE		MANUAL_OK	3to3	-	467920	NA	0	47	10	47
P-0033015-T01-IM6	SOMATIC	EWSR1	SMAD3	22	15	29684885	67467785	Intron of EWSR1(+):110bp after exon 9	Intron of SMAD3(+):5Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - SMAD3 (NM_005902) fusion: t(15;22)(q23;q12.2)(chr15:g.67467785::chr22:g.29684885)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:SMAD3}	0	NA	0	65	10	83
P-0033019-T01-IM6	SOMATIC	EIF5A	GPS2	17	17	7203817	7217066	IGR: 6Kb before EIF5A(+)	Intron of GPS2(-):26bp before exon 7	GRCh37	DELETION	GPS2 (NM_004489) rearrangement: c.481-26:GPS2_chr17:g.7203817del	PRECISE		MANUAL_OK	3to5	-	13249	NA	0	19	10	21
P-0033019-T01-IM6	SOMATIC	NCOR1	ZBBX	17	3	15971224	166807251	Exon 32 of NCOR1(-)	IGR: 151Kb before ZBBX(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(3;17)(q26.1;p11.2)(chr3:g.166807251::chr17:g.15971224)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	62	10	61
P-0033019-T01-IM6	SOMATIC	HDHD1	PPM1D	X	17	7003684	58677786	Intron of HDHD1(-):8Kb before exon 3	Exon 1 of PPM1D(+)	GRCh37	TRANSLOCATION	HDHD1 (NM_001135565) - PPM1D (NM_003620) rearrangement: t(X;17)(p22.31;q23.2)(chrX:g.7003684::chr17:g.58677786)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {HDHD1:PPM1D}	0	NA	0	158	10	231
P-0033034-T01-IM6	SOMATIC	ENOSF1	TP53	18	17	687063	7577544	Intron of ENOSF1(-):1Kb before exon 10	Exon 7 of TP53(-)	GRCh37	TRANSLOCATION	ENOSF1 (NM_017512) - TP53 (NM_000546) Rearrangement: t(17;18)(p13.1;p11.32)(chr17:g.7577544::chr18:g.687063)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ENOSF1:TP53}	0	NA	1	68	10	69
P-0033034-T01-IM6	SOMATIC	GYPC	ERBB4	2	2	126960119	212569991	IGR: 453Kb before GYPC(+)	Intron of ERBB4(-):51bp after exon 10	GRCh37	INVERSION	ERBB4 (NM_005235) Rearrangemnet: chr2:g.126960119_c.1198+52:ERBB4inv	PRECISE		MANUAL_OK	5to5	-	85609872	NA	0	7	8	7
P-0033073-T01-IM6	SOMATIC	CDKN2A	LINGO2	9	9	21971047	28565244	Exon 2 of CDKN2A(-)	5-UTR of LINGO2(-):616Kb before coding start	GRCh37	DELETION	CDKN2A (NM_000077)  rearrangement: c.311_chr9:g.28565244del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LINGO2:CDKN2A}	6594197	NA	0	34	10	48
P-0033083-T01-IM6	SOMATIC	UBA52	MEF2B	19	19	18686772	19257146	3-UTR of UBA52(+):3Kb after coding stop	Exon 8 of MEF2B(-)	GRCh37	DUPLICATION	MEF2B (NM_001145785) rearrangement: chr19:g.18686772_c.817dup	PRECISE		MANUAL_OK	5to3	-	570374	NA	0	16	10	16
P-0033083-T01-IM6	SOMATIC	MDC1	DDR1	6	6	30671736	30794463	Exon 10 of MDC1(-)	IGR: 56Kb before DDR1(+)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.5224_chr6:g.30794463dup	IMPPRECISE		MANUAL_OK	5to3	-	122727	NA	0	7	0	7
P-0033083-T01-IM6	SOMATIC	BTK	RPL36A-HNRNPH2	X	X	100615651	100652530	Exon 8 of BTK(-)	Intron of RPL36A-HNRNPH2(+):2Kb after exon 4	GRCh37	DUPLICATION	BTK (NM_000061) - RPL36A-HNRNPH2 (NM_001199974) rearrangement : c.681:BTK_c.285+5720:RPL36A-HNRNPH2 dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	36879	NA	0	12	10	12
P-0033092-T01-IM6	SOMATIC	ALOX12P2	TP53	17	17	6810657	7572965	IGR: 14Kb before ALOX12P2(+)	Exon 11 of TP53(-)	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: chr17:g.6810657_c.1144dup	PRECISE		MANUAL_OK	5to3	-	762308	NA	0	61	10	65
P-0033096-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29689115	29718362	Intron of EWSR1(+):520bp after exon 12	IGR: 5Kb before AP1B1(-)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.945+520_chr22:g.29718362del	PRECISE		MANUAL_OK	3to5	-	29247	NA	0	18	10	19
P-0033167-T01-IM6	SOMATIC	DNMT1	CACNA1A	19	19	10284442	13595678	Intron of DNMT1(-):104bp after exon 7	Intron of CACNA1A(-):21Kb after exon 1	GRCh37	DUPLICATION	DNMT1 (NM_001379) - CACNA1A (NM_001127222) rearrangement: c.635+105:DNMT1_c.293+21068:CACNA1A dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DNMT1:CACNA1A}	3311236	NA	0	57	10	59
P-0033175-T01-IM6	SOMATIC	FOXA1	FBXO33	14	14	38061948	40100185	Intron of FOXA1(-):32bp before exon 2	IGR: 235Kb before FBXO33(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.73-32_chr14:g.40100185del	PRECISE		MANUAL_OK	3to5	-	2038237	NA	0	3	7	3
P-0033176-T01-IM6	SOMATIC	RBM20	FGFR3	10	4	112544434	1803168	Intron of RBM20(+):115bp before exon 5	Exon 5 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - RBM20 (NM_001134363) rearrangement: t(4;10)(p16.3;q25.2)(chr4:g.1803168::chr10:g.112544434)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:RBM20}	0	NA	0	138	10	147
P-0033192-T01-IM6	SOMATIC	DOT1L	MEF2BNB	19	19	2226686	19295916	Exon 27 of DOT1L(+)	Intron of MEF2BNB(-):926bp after exon 3	GRCh37	DELETION	DOT1L (NM_032482) Rearrangement: c.4166:DOT1L_chr19:g.19295916del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	17069230	NA	0	11	10	13
P-0033207-T01-IM6	SOMATIC	FYN	WISP3	6	6	112041131	112333043	Exon 1 of FYN(-)	IGR: 42Kb before WISP3(+)	GRCh37	DUPLICATION	FYN (NM_153047) rearrangement: c.124_chr6:g.112333043dup	PRECISE		MANUAL_OK	5to3	-	291912	NA	0	6	10	6
P-0033248-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55197402	55222656	Intron of EGFR(+):13Kb before exon 2	Intron of EGFR(+):811bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-12577_c.889+811del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	25254	NA	0	10	0	10
P-0033301-T01-IM6	SOMATIC	BMS1	RET	10	10	43288718	43611861	Intron of BMS1(+):126bp after exon 8	Intron of RET(+):170bp before exon 12	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.2137-171:RET_chr10:g.43288718inv	PRECISE		MANUAL_OK	5to5	-	323143	NA	0	149	10	178
P-0033302-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123223171	123224639	Intron of STAG2(+):1Kb before exon 31	Intron of STAG2(+):25bp after exon 31	GRCh37	INVERSION	STAG2 (NM_001042749) rearrangement: c.3278-1254_c.3467+25inv	PRECISE		MANUAL_OK	5to5	-	1468	NA	0	24	10	24
P-0033304-T01-IM6	SOMATIC	ZKSCAN1	MET	7	7	99623824	116413837	Intron of ZKSCAN1(+):2Kb after exon 3	Intron of MET(+):1Kb before exon 15	GRCh37	DELETION	ZKSCAN1 (NM_003439) - MET (NM_000245) rearrangement: c.580+1894:ZKSCAN1_c.3029-1098:METdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ZKSCAN1:MET}	16790013	NA	0	453	10	464
P-0033310-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21557194	21563075	Intron of LATS2(-):168bp after exon 5	Exon 4 of LATS2(-)	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.844_c.2482+169del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5881	NA	0	8	10	10
P-0033342-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55184379	55222310	Intron of EGFR(+):26Kb before exon 2	Intron of EGFR(+):465bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-25600_c.889+465del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	37931	NA	0	288	0	1328
P-0033397-T01-IM6	SOMATIC	TP53	TP53	17	17	7579352	7582433	Exon 4 of TP53(-)	5-UTR of TP53(-):10Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-2493_c.335del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3081	NA	0	15	10	23
P-0033437-T01-IM6	SOMATIC	PRDM11	RECQL4	11	8	45134707	145739614	5-UTR of PRDM11(+):112Kb before coding start	Exon 11 of RECQL4(-)	GRCh37	TRANSLOCATION	PRDM11 (NM_020229) - RECQL4 (NM_004260) rearrangement: t(8;11)(q24.3;p11.2)(chr8:g.145739614::chr11:g.:45134707)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRDM11:RECQL4}	0	NA	0	13	10	13
P-0033453-T03-IM6	SOMATIC	FOXO1	PAX3	13	2	41135135	223080435	Intron of FOXO1(-):138bp before exon 2	Intron of PAX3(-):4Kb after exon 7	GRCh37	TRANSLOCATION	PAX3 (NM_181459) - FOXO1 (NM_002015) fusion (PAX3 exons 1-7  fused to FOXO1 exon 2): t(2;13)(q36.1;q14.11)(chr2:g.223080435::chr13:g.4113513)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PAX3:FOXO1}	0	NA	0	9	8	8
P-0033464-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9921950	9923621	Intron of GRIN2A(-):1Kb after exon 9	Intron of GRIN2A(-):112bp before exon 9	GRCh37	INVERSION	GRIN2A (NM_001134407) rearrangement: c.1778-112_c.2007+1330inv	PRECISE		MANUAL_OK	3to3	-	1671	NA	0	53	10	53
P-0033474-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15292362	15295316	Intron of NOTCH3(-):24bp after exon 17	Intron of NOTCH3(-):55bp before exon 16	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.2411-55_c.2792+25Ginv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2954	NA	0	10	10	12
P-0033474-T01-IM6	SOMATIC	NOTCH3	BRD4	19	19	15292518	15367624	Exon 17 of NOTCH3(-)	Intron of BRD4(-):150bp after exon 8	GRCh37	INVERSION	NOTCH3 (NM_000435) - BRD4 (NM_058243) rearrangement: c.2661:NOTCH3_c.1551+151:BRD4inv	PRECISE		MANUAL_OK	3to3	-	75106	NA	0	26	10	26
P-0033474-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29684911	29753545	Intron of EWSR1(+):136bp after exon 9	Intron of AP1B1(-):940bp before exon 6	GRCh37	DUPLICATION	EWSR1 (NM_013986) - AP1B1 (NM_001127) rearrangement: c.793+1788:EWSR1_c.526-940:AP1B1dup	PRECISE		MANUAL_OK	5to3	-	68634	NA	0	18	10	23
P-0033495-T01-IM6	SOMATIC	SSBP4	UPF1	19	19	18525719	18963744	IGR: 4Kb before SSBP4(+)	Intron of UPF1(+):51bp before exon 7	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: c.973-52:UPF1_chr19:g.18525719del	PRECISE		MANUAL_OK	3to5	-	438025	NA	0	7	9	7
P-0033554-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42871598	13992250	Intron of TMPRSS2(-):1Kb before exon 2	Intron of ETV1(-):13Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion (TMPRSS2 exon 1 fused to ETV1 exon 6-12):t(7;21)(p21.2;q22.3)(chr7:g.13992250::chr21:g.42871598)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV1}	0	NA	0	73	10	74
P-0033555-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29692611	29734321	Intron of EWSR1(+):253bp after exon 13	Intron of AP1B1(-):657bp after exon 15	GRCh37	DUPLICATION	EWSR1 (NM_013986) - AP1B1 (NM_001127) rearrangement: c.1309+253:EWSR1_c.2163+658:AP1B1dup	PRECISE		MANUAL_OK	5to3	-	41710	NA	0	122	10	126
P-0033555-T01-IM6	SOMATIC	PHF7	PBRM1	3	3	52454597	52610838	Intron of PHF7(+):146bp after exon 6	Intron of PBRM1(-):124bp before exon 23	GRCh37	DUPLICATION	PHF7 (NM_016483) - PBRM1 (NM_018313) rearrangement: c.413+146:PHF7_c.3459-124:PBRM1dup	PRECISE		MANUAL_OK	5to3	-	156241	NA	0	27	10	27
P-0033561-T01-IM6	SOMATIC	NRXN1	CSDE1	2	1	50367258	115263310	Intron of NRXN1(-):49Kb before exon 19	Exon 18 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) Rearrangement : t(1;2)(p13.2;p16.2)(chr1:g.115263310::chr2:g.50367258)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	21	10	21
P-0033597-T01-IM6	SOMATIC	SLC2A5	PIK3CD	1	1	9111025	9784445	Intron of SLC2A5(-):3Kb before exon 4	Exon 22 of PIK3CD(+)	GRCh37	DELETION	SLC2A5 (NM_003039) - PIK3CD (NM_005026) rearrangement: c.294-3232:SLC2A5_c.2830:PIK3CDdel	PRECISE		MANUAL_OK	3to5	-	673420	NA	0	20	10	21
P-0033597-T01-IM6	SOMATIC	NF1	NF1	17	17	29687546	29700427	Exon 57 of NF1(+)	Intron of NF1(+):603bp before exon 58	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.8202_c.8378-604del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12881	NA	0	12	10	12
P-0033602-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971133	21978189	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):7Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.-3363_c.225del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7056	NA	0	15	0	23
P-0033630-T01-IM6	SOMATIC	RECQL	ALG10	12	12	21623985	34134949	Exon 15 of RECQL(-)	IGR: 40Kb before ALG10(+)	GRCh37	DUPLICATION	RECQL (NM_032941) rearrangement: c.1715_chr12:g.34134949dup	PRECISE		MANUAL_OK	5to3	-	12510964	NA	0	4	10	8
P-0033630-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16048322	16052765	Intron of NCOR1(-):1Kb before exon 11	Exon 9 of NCOR1(-)	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.909_c.1083-1312inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	4443	NA	0	7	0	9
P-0033635-T01-IM6	SOMATIC	ETV6	LOH12CR1	12	12	12019982	12572793	Intron of ETV6(+):2Kb before exon 5	Intron of LOH12CR1(+):16Kb before exon 3	GRCh37	DUPLICATION	LOH12CR1 (NM_058169) - ETV6 (NM_001987) rearrangemnet: c.203-15769:LOH12CR1_c.464-2376:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {LOH12CR1:ETV6}	552811	NA	0	6	10	6
P-0033644-T01-IM6	SOMATIC	GFPT2	FLT4	5	5	179758643	180057417	Intron of GFPT2(-):90bp before exon 5	Intron of FLT4(-):80bp before exon 4	GRCh37	DUPLICATION	GFPT2 (NM_005110) - FLT4 (NM_182925) Rearrangement: c.341-90:GFPT2_c.401-80:FLT4dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {GFPT2:FLT4}	298774	NA	0	5	0	5
P-0033648-T01-IM6	SOMATIC	MAP3K1	PDE4D	5	5	56168775	59021514	Exon 9 of MAP3K1(+)	Intron of PDE4D(-):263Kb after exon 3	GRCh37	DELETION	MAP3K1 (NM_005921) Rearrangement : c.1629:MAP3K1_c.455+167481:PDE4Ddel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2852739	NA	0	34	10	34
P-0033650-T01-IM6	SOMATIC	BRCA1	AP2A2	17	11	41244940	935253	Exon 10 of BRCA1(-)	Intron of AP2A2(+):9Kb after exon 1	GRCh37	TRANSLOCATION	AP2A2 (NM_001242837) - BRCA1 (NM_007294) Rearrangement : t(11,17)(p15.4,q21.31)(chr11:g.935253::chr17:g.41244940)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {AP2A2:BRCA1}	0	NA	0	50	10	54
P-0033651-T02-IM6	SOMATIC	ERBB3	BAZ2A	12	12	56487243	57018329	Exon 12 of ERBB3(+)	Intron of BAZ2A(-):7Kb before exon 2	GRCh37	DUPLICATION	ERBB3 (NM_001982) Rearrangement : c.1389:ERBB3_c.5-7013:BAZ2Adup	PRECISE		MANUAL_OK	5to3	-	531086	NA	0	16	10	16
P-0033657-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36210360	36211876	Intron of KMT2B(+):10bp before exon 2	Exon 3 of KMT2B(+)	GRCh37	INVERSION	KMT2B (MLL4) (NM_014727) Rearrangement : c.364-11_c.1627inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1516	NA	0	76	10	75
P-0033690-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151840386	151864411	Intron of KMT2C(-):1Kb after exon 55	Exon 42 of KMT2C(-)	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.9570_c.14343+1412dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	24025	NA	0	24	10	24
P-0033720-T01-IM6	SOMATIC	HPN-AS1	KMT2B	19	19	35558580	36210369	3-UTR of HPN-AS1(-):39Kb after coding stop	Intron of KMT2B(+):1bp before exon 2	GRCh37	DELETION	KMT2B (NM_014727) Rearrangement :chr19:g.35558580_c.364-2:KMT2Bdel	PRECISE		MANUAL_OK	3to5	-	651789	NA	0	5	10	7
P-0033722-T01-IM6	SOMATIC	NF1	AARSD1	17	17	29684445	41107097	Intron of NF1(+):58bp after exon 54	Intron of AARSD1(-):77bp after exon 8	GRCh37	INVERSION	NF1 (NM_001042492) - AARSD1 (NM_001261434) Rearrangement : c.7970+58:NF1_c.861+78:AARSD1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NF1:AARSD1}	11422652	NA	0	53	10	52
P-0033722-T01-IM6	SOMATIC	JUP	STAT5A	17	17	39908258	40461405	Promoter of JUP(-):3Kb from tx start	Exon 19 of STAT5A(+)	GRCh37	INVERSION	JUP (NM_002230) - STAT5A (NM_003152) Rearrangement : c.*3738:JUP_c.2125:STAT5Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {JUP:STAT5A}	553147	NA	0	57	10	66
P-0033726-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89684660	89712003	Intron of PTEN(+):609bp before exon 3	Exon 6 of PTEN(+)	GRCh37	DUPLICATION	PTEN (NM_000314) Rearrangement : c.165-610_c.621del	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	27343	NA	0	6	0	9
P-0033726-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3832749	3873828	Exon 6 of CREBBP(-)	Intron of CREBBP(-):13Kb before exon 3	GRCh37	DUPLICATION	CREBBP (NM_004380) Rearrangement: c.799-13048_c.1509dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	41079	NA	0	73	10	79
P-0033738-T01-IM6	SOMATIC	FGF21	PPP2R1A	19	19	49275826	52722871	IGR: 16Kb before FGF21(+)	Intron of PPP2R1A(+):72bp before exon 10	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.1129-73:PPP2R1A_chr19:g.49275826inv	PRECISE		MANUAL_OK	5to5	-	3447045	NA	0	7	9	7
P-0033769-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46247446	46298163	Intron of ARID2(+):767bp after exon 15	Intron of ARID2(+):553bp before exon 21	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.4773+767_c.5364-554dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	50717	NA	0	3	5	3
P-0033770-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187541570	187584086	Exon 10 of FAT1(-)	Intron of FAT1(-):366bp after exon 3	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3580+367_c.6170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	42516	NA	0	5	10	8
P-0033798-T01-IM6	SOMATIC	FBXO21	SETD8	12	12	117582663	123875149	3-UTR of FBXO21(-):1Kb after coding stop	Intron of SETD8(+):27bp before exon 3	GRCh37	DELETION	SETD8 (NM_020382) rearrangement: c.133-28:SETD8_chr12:g.117582663del	IMPPRECISE		MANUAL_OK	3to5	-	6292486	NA	0	10	0	14
P-0033798-T01-IM6	SOMATIC	KDM6A	KRBOX4	X	X	44949111	46333025	Exon 25 of KDM6A(+)	3-UTR of KRBOX4(+):23Kb after coding stop	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.3672:KDM6A_chrX:g.46333025inv	PRECISE		MANUAL_OK	5to5	-	1383914	NA	0	27	10	36
P-0033812-T01-IM6	SOMATIC	ZFHX3	LINC01568	16	16	72829624	73684489	Exon 9 of ZFHX3(-)	IGR: 264Kb before LINC01568(+)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : c.6957:ZFHX3_chr16:g.73684489del	PRECISE		MANUAL_OK	3to5	-	854865	NA	1	22	10	21
P-0033813-T01-IM6	SOMATIC	PTPRD	LOC100506422	9	9	8499623	26375496	Intron of PTPRD(-):23bp after exon 25	IGR: 309Kb before LOC100506422(+)	GRCh37	INVERSION	PTPRD (NM_002839) Rearrangement : c.2322+24:PTPRD_chr9:g.26375496inv	PRECISE		MANUAL_OK	5to5	-	17875873	NA	0	14	10	15
P-0033816-T01-IM6	SOMATIC	APC	APC	5	5	112175840	112178984	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) Rearrangement : c.4549_c.7693del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3144	NA	0	48	10	54
P-0033821-T01-IM6	SOMATIC	TP53	SLC7A8	17	14	7578709	23619168	Intron of TP53(-):155bp before exon 5	Intron of SLC7A8(-):7Kb before exon 4	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement : t(14,17)(q11.2; q12)(chr14:g.23619168::chr17:g.7578709)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	10	31
P-0033850-T01-IM6	SOMATIC	CGNL1	FGFR2	15	10	57761701	123240015	Intron of CGNL1(+):8Kb after exon 9	Intron of FGFR2(-):480bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - CGNL1 (NM_032866) rearrangement: t(10;15)(q26.13;q21.3)(chr10:g.123240015::chr15:g.57761701)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:CGNL1}	0	NA	0	7	10	7
P-0033890-T01-IM6	SOMATIC	CDKN2A	CDKN2B	9	9	21968857	22217818	Intron of CDKN2A(-):616bp before exon 3	IGR: 215Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.458-616:CDKN2Ap16INK4A_chr9:g.22217818del	PRECISE		MANUAL_OK	3to5	-	248961	NA	0	47	10	51
P-0033891-T01-IM6	SOMATIC	SUZ12	SUZ12	17	17	30315457	30321030	Exon 10 of SUZ12(+)	Intron of SUZ12(+):3bp after exon 12	GRCh37	DELETION	SUZ12 (NM_015355) rearrangement: c.1142_c.1437+3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5573	NA	0	28	10	97
P-0033901-T01-IM6	SOMATIC	SDHA	SDHA	5	5	226143	227016	Exon 5 of SDHA(+)	Intron of SDHA(+):854bp after exon 5	GRCh37	INVERSION	SDHA (NM_004168) rearrangement: c.602_c.621+854inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	873	NA	0	9	10	19
P-0033934-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876366	42879212	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):664bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+665:TMPRSS2_c.40-58822:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3002846	NA	0	3	8	3
P-0033934-T01-IM6	SOMATIC	KMT2C	RBM33	7	7	151878584	155462793	Exon 36 of KMT2C(-)	Intron of RBM33(+):3Kb before exon 3	GRCh37	INVERSION	RBM33 (NM_053043) - KMT2C (NM_170606) rearrangement: c.123-2768:RBM33_c.6361:KMT2Cinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RBM33:KMT2C}	3584209	NA	0	4	10	4
P-0033937-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78563518	78923111	Intron of RPTOR(+):36Kb before exon 2	Intron of RPTOR(+):131bp before exon 28	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.163-35973_c.3266-132del	PRECISE		MANUAL_OK	3to5	Deletion of 26 exons : out of frame	359593	NA	0	3	10	3
P-0033953-T01-IM6	SOMATIC	SPEN	DNM3	1	1	16261525	172260997	Exon 11 of SPEN(+)	Intron of DNM3(+):17Kb before exon 16	GRCh37	DUPLICATION	DNM3 (NM_015569) - SPEN (NM_015001) rearrangement: c.1770-16871:DNM3_c.8790:SPENdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNM3:SPEN}	155999472	NA	0	66	10	69
P-0033959-T01-IM6	SOMATIC	KMT2D	TET2	12	4	49446476	105876472	Exon 9 of KMT2D(-)	IGR: 191Kb before TET2(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(4;12)(q24;q13.12)(chr4:g.105876472::chr12:g.49446476)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	8
P-0033962-T01-IM6	SOMATIC	PLCD3	MAP3K14	17	17	43209591	43342597	Intron of PLCD3(-):23bp after exon 1	Exon 15 of MAP3K14(-)	GRCh37	DUPLICATION	PLCD3 (NM_133373) - MAP3K14(NM_003954) Rearrangement: c.163+24:PLCD3_c.2611: MAP3K14dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLCD3:MAP3K14}	133006	NA	0	34	10	36
P-0033973-T01-IM6	SOMATIC	PRKAG1	KMT2D	12	12	49408681	49427038	Intron of PRKAG1(-):2Kb before exon 2	Exon 39 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) - PRKAG1 (NM_002733) rearrangement: c.11450:KMT2D_c.10-1788:PRKAG1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2D:PRKAG1}	18357	NA	0	32	10	142
P-0033983-T01-IM6	SOMATIC	TERT	SEMA5A	5	5	1295288	9089573	Promoter of TERT(-):42Kb from tx start	Intron of SEMA5A(-):19Kb after exon 16	GRCh37	INVERSION	TERT (NM_198253) - SEMA5A (NM_003966) rearrangement: c.-184:TERT_c.2073+18679:SEMA5Ainv	PRECISE		MANUAL_OK	3to3	-	7794285	NA	0	11	10	11
P-0034025-T01-IM6	SOMATIC	ASXL1	MAPRE1	20	20	31022625	31423707	Exon 12 of ASXL1(+)	Intron of MAPRE1(+):732bp before exon 4	GRCh37	INVERSION	ASXL1 (NM_015338) Rearrangement: c.2110:ASXL1_chr20:g.31423707inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	401082	NA	0	19	10	31
P-0034031-T01-IM6	SOMATIC	EWSR1	AP1B1	22	22	29683155	29744005	Intron of EWSR1(+):32bp after exon 8	Intron of AP1B1(-):1Kb after exon 11	GRCh37	DUPLICATION	EWSR1 (NM_013986) - AP1B1 (NM_001127) Rearrangement: c.811+32:EWSR1_c.1437+1202:AP1B1dup	PRECISE		MANUAL_OK	5to3	-	60850	NA	0	17	10	17
P-0034064-T01-IM6	SOMATIC	EWSR1	CREB3L2	22	7	29684656	137593036	Exon 9 of EWSR1(+)	Exon 5 of CREB3L2(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L2 (NM_194071) Fusion: t(7;22)(q33;q12.2)(chr7:g.137593036::chr22:g.29684656)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:CREB3L2}	0	NA	0	103	10	107
P-0034117-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138556165	140483812	Intron of KIAA1549(-):57bp before exon 13	Intron of BRAF(-):855bp before exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4346-57:KIAA1549_c.1178-855:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1927647	NA	0	19	10	21
P-0034126-T02-IM6	SOMATIC	STK11	STK11	19	19	1207028	1229944	Exon 1 of STK11(+)	Promoter of STK11(+):24Kb from tx start	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.116:STK11_chr19:g.1229944del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22916	NA	0	12	0	12
P-0034157-T01-IM6	SOMATIC	CDK12	MAP3K3	17	17	37682368	61753552	Exon 13 of CDK12(+)	Intron of MAP3K3(+):6Kb before exon 7	GRCh37	INVERSION	CDK12 (NM_016507) - MAP3K3 (NM_002401) rearrangement: c.3559:CDK12_c.503-5574:MAP3K3inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	24071184	NA	0	40	10	40
P-0034157-T02-IM6	SOMATIC	CDK12	MAP3K3	17	17	37682368	61753552	Exon 13 of CDK12(+)	Intron of MAP3K3(+):6Kb before exon 7	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3559:CDK12_chr17:g.61753552inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	24071184	NA	0	59	10	89
P-0034160-T01-IM6	SOMATIC	KCTD5	CREBBP	16	16	2738369	3808817	Intron of KCTD5(+):6Kb after exon 1	Intron of CREBBP(-):37bp after exon 17	GRCh37	DELETION	KCTD5 (NM_018992) - CREBBP (NM_004380) rearrangement: c.252+556:KCTD5_c.3369+38:CREBBPdel	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	1070448	NA	0	8	0	9
P-0034183-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1735003	1808914	Intron of TACC3(+):2Kb after exon 6	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 7-16): c.2346:FGFR3_c.1591+1975dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	73911	NA	0	102	10	118
P-0034193-T01-IM6	SOMATIC	NF1	CCDC47	17	17	29685775	61829710	Intron of NF1(+):135bp after exon 55	Exon 11 of CCDC47(-)	GRCh37	INVERSION	NF1 (NM_001042492) - CCDC47 (NM_020198) rearrangement: c.8113+135:NF1_c.1173:CCDC47inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NF1:CCDC47}	32143935	NA	0	20	10	19
P-0034193-T01-IM6	SOMATIC	NF1	TANC2	17	17	29685784	61087770	Intron of NF1(+):144bp after exon 55	Intron of TANC2(+):783bp after exon 1	GRCh37	DUPLICATION	TANC2 (NM_025185) - NF1 (NM_001042492) rearrangement: c.67+783:TANC2_c.8113+144:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TANC2:NF1}	31401986	NA	0	20	10	20
P-0034228-T01-IM6	SOMATIC	LOC100996291	JAK2	17	9	76292073	5055704	IGR: 35Kb before LOC100996291(-)	Exon 8 of JAK2(+)	GRCh37	TRANSLOCATION	JAK2 (NM_004972) rearrangement: t(9;17)(p24.1;q25.3)(chr9:g.5055704::chr17:g.76292073)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	45	10	51
P-0034228-T02-IM6	SOMATIC	LOC100996291	JAK2	17	9	76292073	5055704	IGR: 35Kb before LOC100996291(-)	Exon 8 of JAK2(+)	GRCh37	TRANSLOCATION	JAK2 (NM_004972): t(9;17)(p24.1;q25.3)(chr9:g.5055704::chr17:g.76292073)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	24	10	31
P-0034229-T01-IM6	SOMATIC	ERBB3	ZBBX	12	3	56492584	166641860	Exon 23 of ERBB3(+)	IGR: 316Kb before ZBBX(-)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(3;12)(q26.1;q13.2)(chr3:g.166641860::chr12:g.:56492584)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	35	10	35
P-0034252-T01-IM6	SOMATIC	ID3	ID3	1	1	23883270	23889029	Promoter of ID3(-):1Kb from tx start	Promoter of ID3(-):5Kb from tx start	GRCh37	DELETION	ID3 (NM_002167) rearrangement: c.-3112_c.*1662del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	5759	NA	0	87	10	92
P-0034278-T01-IM6	SOMATIC	CIC	PVRL2	19	19	42793127	45393207	Exon 7 of CIC(+)	Promoter of PVRL2(+):44Kb from tx start	GRCh37	INVERSION	CIC (NM_015125) rearrangment: c.1019:CIC_chr19:g.45393207inv	PRECISE		MANUAL_OK	5to5	-	2600080	NA	0	3	7	4
P-0034298-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39961095	42873083	3-UTR of ERG(-):73Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2967:TMPRSS2_c.-149-4226:ERGdel	PRECISE		MANUAL_OK	3to5	-	2911988	NA	0	50	10	53
P-0034343-T02-IM6	SOMATIC	BRD4	NOP10	19	15	15364571	34634531	Intron of BRD4(-):391bp after exon 11	Intron of NOP10(-):222bp before exon 2	GRCh37	TRANSLOCATION	BRD4 (NM_058243) Rearrangement : t(15;19)(q14;p13.13)(chr15:g.34634531::chr19:g.15364571)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	49	10	53
P-0034349-T01-IM6	SOMATIC	LOC100507420	PRDM14	8	8	37219767	70981483	IGR: 44Kb before LOC100507420(-)	Exon 2 of PRDM14(-)	GRCh37	DUPLICATION	PRDM14 (NM_024504) rearrangement: c.613:PRDM14_chr8:g.37219767dup	PRECISE		MANUAL_OK	5to3	-	33761716	NA	0	3	5	3
P-0034356-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37616983	37618791	Promoter of CDK12(+):780bp from tx start	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.-1342_c.467del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1808	NA	0	35	10	35
P-0034359-T01-IM6	SOMATIC	SPEN	ZBTB17	1	1	16259102	16281913	Exon 11 of SPEN(+)	5-UTR of ZBTB17(-):13Kb before coding start	GRCh37	DUPLICATION	SPEN (NM_015001) rearrangement: c.6367:SPEN_chr1:g.16281913dup	PRECISE		MANUAL_OK	5to3	-	22811	NA	0	20	10	20
P-0034365-T01-IM6	SOMATIC	POLE	ANKLE2	12	12	133202295	133338972	Exon 47 of POLE(-)	Promoter of ANKLE2(-):37Kb from tx start	GRCh37	DUPLICATION	POLE (NM_006231) fusion: c.6593_chr12:g.133338972up	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {POLE:ANKLE2}	136677	NA	0	9	10	9
P-0034374-T01-IM6	SOMATIC	RB1	RB1	13	13	48936270	48939059	Intron of RB1(+):680bp before exon 8	Exon 9 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) Rearrangement: c.719-681_c.891del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2789	NA	0	9	10	10
P-0034385-T01-IM6	SOMATIC	STAT3	BCAS3	17	17	40498956	59012270	Intron of STAT3(-):225bp before exon 3	Intron of BCAS3(+):10Kb after exon 13	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.129-225:STAT3_chr17:g.59012270del	PRECISE		MANUAL_OK	3to5	-	18513314	NA	0	6	10	5
P-0034385-T01-IM6	SOMATIC	EGFL7	PNPLA7	9	9	139564191	140375889	Intron of EGFL7(+):18bp after exon 4	Intron of PNPLA7(-):414bp before exon 22	GRCh37	INVERSION	PNPLA7 (NM_001098537) - EGFL7 (NM_201446) rearrangement: c.2348-414:PNPLA7_c.313+18:EGFL7inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PNPLA7:EGFL7}	811698	NA	0	3	7	3
P-0034431-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39854689	42872774	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-2658:TMPRSS2_c.18+15598:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3018085	NA	0	134	10	144
P-0034440-T01-IM6	SOMATIC	ATP9B	TP53	18	17	76969453	7577802	Intron of ATP9B(+):2Kb after exon 10	Intron of TP53(-):194bp before exon 7	GRCh37	TRANSLOCATION	ATP9B (NM_198531) - TP53 (NM_000546) Rearrangment :  t(17;18)(p13.1;q23)(chr17:g.7577802::chr18:g. 76969453)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ATP9B:TP53}	0	NA	0	17	10	16
P-0034450-T01-IM6	SOMATIC	ALK	EML4	2	2	29446354	42529087	Exon 20 of ALK(-)	Intron of EML4(+):555bp after exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon13 fused with ALK exons 20) : c.1641+555:EML4_c.3213:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13082733	NA	0	55	10	52
P-0034464-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193117043	193178149	Exon 8 of CDC73(+)	Intron of CDC73(+):3Kb before exon 12	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.776_c.1031-3046del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	61106	NA	0	4	10	4
P-0034464-T01-IM6	SOMATIC	GINS2	FANCA	16	16	85711453	89818417	3-UTR of GINS2(-):364bp after coding stop	Intron of FANCA(-):128bp after exon 31	GRCh37	DELETION	FANCA (NM_000135) rearrangement: chr16:g.85711453_c.3066+129del	PRECISE		MANUAL_OK	3to5	-	4106964	NA	0	10	10	10
P-0034464-T01-IM6	SOMATIC	PTCH1	UPP2	9	2	98212161	158929185	Exon 21 of PTCH1(-)	Intron of UPP2(+):29Kb before exon 3	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) - UPP2 (NM_001135098) rearrangement: t(2;9)(q24.1;q22.32)(chr2:g.158929185::chr9:g.98212161)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	5
P-0034465-T01-IM6	SOMATIC	LATS1	LATS1	6	6	149995474	150004823	Intron of LATS1(-):2Kb after exon 7	Exon 4 of LATS1(-)	GRCh37	DUPLICATION	LATS1 (NM_004690) rearrangement: c.1402_c.2883+1922dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9349	NA	0	44	10	49
P-0034469-T01-IM6	SOMATIC	NBEAL2	SETD2	3	3	47038707	47165059	Intron of NBEAL2(+):41bp before exon 19	Exon 3 of SETD2(-)	GRCh37	DUPLICATION	NBEAL2 (NM_015175) - SETD2 (NM_014159) rearrangement: c.2650-4:NBEAL2_c.1067:SETD2dup	PRECISE		MANUAL_OK	5to3	-	126352	NA	0	7	10	7
P-0034476-T01-IM6	SOMATIC	SLC25A10	ANKRD11	17	16	79679431	89352516	5-UTR of SLC25A10(+):25bp before coding start	Exon 8 of ANKRD11(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) Rearrangement : t(16,17)(q24.2,q25.3)(chr16:g.89352516::chr17:g.79679431)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	23	10	23
P-0034506-T01-IM6	SOMATIC	ARID2	AMIGO2	12	12	46215295	47316536	Intron of ARID2(+):25bp after exon 6	IGR: 153Kb before AMIGO2(-)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.705+25_chr12:g.47316536del	IMPPRECISE		MANUAL_OK	3to5	-	1101241	NA	0	6	0	6
P-0034515-T01-IM6	SOMATIC	NCOR1	WASF2	17	1	15983299	27748183	Exon 26 of NCOR1(-)	Intron of WASF2(-):3Kb before exon 3	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - WASF2 (NM_006990) rearrangement: t(1;17)(p36.11;p12)(chr1:g.27748183::chr17:g.15983299)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOR1:WASF2}	0	NA	0	25	10	45
P-0034560-T01-IM6	SOMATIC	ERCC3	ERCC3	2	2	128014654	128016810	Promoter of ERCC3(-):211bp from tx start	Intron of ERCC3(-):61bp after exon 14	GRCh37	DELETION	ERCC3 (NM_000122) rearrangement: c.2217+62_c.*518del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	2156	NA	0	5	0	5
P-0034560-T02-IM6	SOMATIC	ERCC3	ERCC3	2	2	128014654	128016781	Promoter of ERCC3(-):211bp from tx start	Intron of ERCC3(-):90bp after exon 14	GRCh37	DELETION	ERCC3 (NM_000122) rearrangement: c.2217+62_c.*518del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	2127	NA	0	5	0	6
P-0034577-T01-IM6	SOMATIC	STK11	METRN	19	16	1221857	762979	Intron of STK11(+):90bp before exon 7	Promoter of METRN(+):2Kb from tx start	GRCh37	TRANSLOCATION	STK11 (NM_000455) rearrangement: t(16;19)(p13.3;p13.3)(chr16:g.762979::chr19:g.1221857)	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {METRN:STK11}	0	NA	0	9	0	9
P-0034609-T01-IM6	SOMATIC	ROS1	EZR	6	6	117647244	159191621	Intron of ROS1(-):142bp after exon 33	Intron of EZR(-):174bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+175:EZR_c.5557+143:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41544377	NA	0	48	10	51
P-0034612-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683806	128659530	Intron of EWSR1(+):683bp after exon 8	Intron of FLI1(+):8Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128659530::chr22:g.29683806)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	131	10	136
P-0034616-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55090555	55221873	Intron of EGFR(+):3Kb after exon 1	Intron of EGFR(+):28bp after exon 7	GRCh37	DELETION	EGFR vIII (NM_005228) rearrangement: c.88+3497_c.889+28del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	131318	NA	0	170	10	255
P-0034620-T01-IM6	SOMATIC	TMPRSS2	CSK	21	15	42875844	75094115	Intron of TMPRSS2(-):4Kb after exon 1	Exon 12 of CSK(+)	GRCh37	TRANSLOCATION	CSK (NM_001127190) - TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q24.1;q22.3)(chr15:g.75094115::chr21:g.42875844)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CSK:TMPRSS2}	0	NA	0	9	10	8
P-0034620-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39860511	42875887	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3990:TMPRSS2_c.18+9776:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015376	NA	0	5	0	5
P-0034651-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46170504	46244208	Intron of ARID2(+):35Kb before exon 4	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.285-34697_c.2302del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	73704	NA	0	43	10	49
P-0034651-T01-IM6	SOMATIC	CDKN1A	CDKN1A	6	6	36650568	36653429	5-UTR of CDKN1A(+):1Kb before coding start	Intron of CDKN1A(+):98bp before exon 4	GRCh37	DELETION	CDKN1A (NM_078467) rearrangement: c.446-99:CDKN1A_chr6:g.36650568del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	2861	NA	0	62	0	63
P-0034666-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1739655	1808721	Intron of TACC3(+):226bp after exon 10	Intron of FGFR3(+):60bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+60:FGFR3_c.1941+226:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69066	NA	0	197	10	237
P-0034667-T01-IM6	SOMATIC	SMAD2	SMAD2	18	18	45343181	45394602	IGR: 16Kb before SMAD2(-)	Intron of SMAD2(-):91bp after exon 5	GRCh37	DELETION	SMAD2 (NM_001003652) Rearrangement: c.655+92_chr18:g.45343181del	PRECISE		MANUAL_OK	3to5	-	51421	NA	0	14	10	16
P-0034669-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191214	55222500	Intron of EGFR(+):19Kb before exon 2	Intron of EGFR(+):655bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-18765_c.889+655del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31286	NA	0	65	0	363
P-0034674-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39842053	42875738	Intron of ERG(-):25Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4139:TMPRSS2_c.19-24509:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3033685	NA	0	66	10	71
P-0034684-T01-IM6	SOMATIC	KDM2B	SESN1	12	6	121909964	109330448	Intron of KDM2B(-):19Kb before exon 13	Intron of SESN1(-):7Kb before exon 2	GRCh37	TRANSLOCATION	KDM2B (NM_032590) Rearrangement : t(6;12)(q21;q24.31)(chr6:g.109330448::chr12:g.121909964)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	73	10	82
P-0034704-T01-IM6	SOMATIC	RET	TRIM24	10	7	43611827	138243011	Intron of RET(+):204bp before exon 12	Intron of TRIM24(+):3Kb after exon 9	GRCh37	TRANSLOCATION	TRIM24 (NM_015905) - RET (NM_020975) Fusion (TRIM24 exon 9 fused with RET exon12) : t(7;10)(q34;q11.21)(chr7:g.138243011::chr10:g.43611827)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TRIM24:RET}	0	NA	0	143	10	145
P-0034708-T01-IM6	SOMATIC	KIF13B	DUSP4	8	8	29087574	29203017	Intron of KIF13B(-):15Kb after exon 2	Intron of DUSP4(-):4Kb after exon 1	GRCh37	DUPLICATION	KIF13B (NM_015254) - DUSP4 (NM_001394) Rearrangement : c.149+15289:KIF13B_c.433+4346:DUSP4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KIF13B:DUSP4}	115443	NA	0	14	10	14
P-0034727-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52678751	52690158	Exon 9 of PBRM1(-)	Intron of PBRM1(-):2Kb after exon 6	GRCh37	DELETION	PBRM1 (NM_018313) Rearrangement : c.645+2057_c.868del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11407	NA	0	24	10	25
P-0034733-T01-IM6	SOMATIC	ALK	ALK	2	2	29446137	29447990	Intron of ALK(-):70bp after exon 20	Intron of ALK(-):336bp after exon 19	GRCh37	DELETION	ALK (NM_004304) Rearrangement : c.3172+337_c.3359+71del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1853	NA	0	49	10	53
P-0034736-T01-IM6	SOMATIC	AXL	AXL	19	19	41735590	41745937	Intron of AXL(+):1Kb before exon 5	Intron of AXL(+):312bp after exon 10	GRCh37	DELETION	AXL (NM_021913) Rearrangement : c.587-1282_c.1312+312del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	10347	NA	0	7	0	7
P-0034737-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3843243	3844318	Intron of CREBBP(-):143bp after exon 4	Intron of CREBBP(-):691bp before exon 4	GRCh37	DUPLICATION	CREBBP (NM_004380) Rearrangement : c.976-691_c.1216+144dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1075	NA	0	3	10	7
P-0034750-T01-IM6	SOMATIC	CCNE1	ZNF536	19	19	30308146	30915262	Exon 5 of CCNE1(+)	5-UTR of ZNF536(+):19Kb before coding start	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.283:CCNE1_chr19:g.30915262inv	IMPPRECISE		MANUAL_OK	5to5	-	607116	NA	0	6	0	6
P-0034760-T01-IM6	SOMATIC	RAD51C	LRFN5	17	14	56810134	42227931	Intron of RAD51C(+):229bp after exon 8	5-UTR of LRFN5(+):128Kb before coding start	GRCh37	TRANSLOCATION	RAD51C (NM_058216) Rearrangement : t(14,17)(q21.1; q23.1)(chr14:g.42227931::chr17:g56810134)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	19	10	19
P-0034760-T01-IM6	SOMATIC	SLC1A1	JAK2	9	9	4500276	5055949	Intron of SLC1A1(+):10Kb after exon 1	Intron of JAK2(+):161bp after exon 8	GRCh37	DUPLICATION	JAK2 (NM_004972) - SLC1A1(NM_004170) Rearrangement : c.1056+161:JAK2_c.91+9506_SLC1A1	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {JAK2:SLC1A1}	555673	NA	0	5	10	5
P-0034763-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187524720	187532059	Exon 19 of FAT1(-)	Intron of FAT1(-):480bp after exon 14	GRCh37	INVERSION	FAT (NM_005245) Rearrangement : c.9853+481_c.10960inv	PRECISE		MANUAL_OK	3to3	-	7339	NA	0	54	10	55
P-0034773-T01-IM6	SOMATIC	EMID1	EWSR1	22	22	29653600	29684132	Intron of EMID1(+):1Kb before exon 15	Intron of EWSR1(+):462bp before exon 9	GRCh37	DUPLICATION	EWSR1 (NM_013986) - EMID1 (NM_133455) rearrangement: c.812-463:EWSR1_c.1205-1206:EMID1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EWSR1:EMID1}	30532	NA	0	3	10	3
P-0034790-T01-IM6	SOMATIC	MIR31HG	CDKN2A	9	9	21533844	21994147	3-UTR of MIR31HG(-):26Kb after coding stop	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.184:CDKN2Ap14ARF_chr9:g.21533844del	PRECISE		MANUAL_OK	3to5	-	460303	NA	0	7	10	7
P-0034796-T01-IM6	SOMATIC	PMS2	THSD7A	7	7	6038777	11273145	Exon 6 of PMS2(-)	IGR: 137Kb before THSD7A(-)	GRCh37	INVERSION	PMS2 (NM_000535) rearrangement: c.667:PMS2_chr7:g.11273145inv	PRECISE		MANUAL_OK	5to5	-	5234368	NA	0	27	10	28
P-0034797-T02-IM6	SOMATIC	ITM2B	RB1	13	13	48814756	49037941	Intron of ITM2B(+):7Kb after exon 1	Exon 21 of RB1(+)	GRCh37	INVERSION	RB1(NM_000321) Rearrangement : chr13:g.48814756_c.2181:RB1inv	PRECISE		MANUAL_OK	5to5	-	223185	NA	0	9	10	9
P-0034797-T02-IM6	SOMATIC	IGF1R	TTC23	15	15	99500295	99753060	Exon 21 of IGF1R(+)	Intron of TTC23(-):6Kb after exon 6	GRCh37	INVERSION	TTC23 (NM_022905) - IGF1R (NM_000875) Rearrangement : c.581+5733:TTC23_c.3728:IGF1Rinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TTC23:IGF1R}	252765	NA	0	11	10	12
P-0034813-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39865853	42876420	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3457:TMPRSS2_c.18+4434:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3010567	NA	0	6	10	7
P-0034815-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39866567	42873156	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3040:TMPRSS2_c.18+3720:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006589	NA	0	23	10	27
P-0034845-T01-IM6	SOMATIC	SND1	BRAF	7	7	127548530	140489241	Intron of SND1(+):4Kb after exon 14	Intron of BRAF(-):2Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) rearrangement: c.1527+3658:SND1_c.1141-1857:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	12940711	NA	0	93	10	90
P-0034865-T01-IM6	SOMATIC	TMPRSS2	OSBPL1A	21	18	42874744	21746075	Intron of TMPRSS2(-):5Kb before exon 2	Intron of OSBPL1A(-):467bp after exon 14	GRCh37	TRANSLOCATION	OSBPL1A (NM_080597) - TMPRSS2 (NM_001135099) rearrangement: t(18;21)(q11.2;q22.3)(chr18:g.21746075::chr21:g.42874744)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {OSBPL1A:TMPRSS2}	0	NA	0	33	10	34
P-0034865-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39881222	42874660	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4544:TMPRSS2_c.40-63678:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993438	NA	0	54	10	59
P-0034892-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55091680	55223435	Intron of EGFR(+):5Kb after exon 1	Intron of EGFR(+):87bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+4622_c.890-88del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	131755	NA	0	246	10	891
P-0034892-T01-IM6	SOMATIC	EGFR	KIAA1324L	7	7	55268103	86587163	Exon 24 of EGFR(+)	Intron of KIAA1324L(-):7Kb after exon 2	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2943:EGFR_chr7:g.86587163del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	31319060	NA	0	108	10	226
P-0034917-T01-IM6	SOMATIC	FAM19A2	MDC1	12	6	61245740	30680394	IGR: 856Kb before FAM19A2(-)	Exon 5 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;12)(p21.33;q14.1)(chr6:g.30680394::chr12:g.61245740)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	13	0	13
P-0034922-T01-IM6	SOMATIC	CIC	CIC	19	19	42789737	42793603	Intron of CIC(+):814bp after exon 1	Intron of CIC(+):45bp after exon 8	GRCh37	INVERSION	CIC (NM_015125 rearrangement: c.67+814_c.1360+45inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3866	NA	0	111	10	110
P-0034928-T01-IM6	SOMATIC	GPR160	PRKCI	3	3	169756755	169977756	5-UTR of GPR160(+):45Kb before coding start	Exon 3 of PRKCI(+)	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.224-1:PRKCI_chr3:g.169756755del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GPR160:PRKCI}	221001	NA	0	16	10	21
P-0034975-T01-IM6	SOMATIC	KDM5A	ATF7IP	12	12	406302	14309266	Exon 25 of KDM5A(-)	IGR: 209Kb before ATF7IP(+)	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.4139:KDM5A_chr12:g.14309266inv	PRECISE		MANUAL_OK	5to5	-	13902964	NA	0	6	6	6
P-0035023-T01-IM6	SOMATIC	ETV6	RERGL	12	12	12028660	18206155	Intron of ETV6(+):6Kb after exon 5	IGR: 28Kb before RERGL(-)	GRCh37	DUPLICATION	ETV6 (NM_001987) Rearrangement : c.1009+5757_chr12:g.18206155dup	PRECISE		MANUAL_OK	5to3	-	6177495	NA	0	170	10	188
P-0035031-T01-IM6	SOMATIC	TP63	TP63	3	3	189483203	189526294	Intron of TP63(+):27Kb after exon 3	Exon 4 of TP63(+)	GRCh37	DUPLICATION	TP63 (NM_003722) Rearrangement : c.324+26640_c.558dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	43091	NA	0	3	5	3
P-0035065-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16044271	16049636	Intron of NCOR1(-):2Kb before exon 12	Intron of NCOR1(-):53bp after exon 10	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.1082+54_c.1174-1771del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5365	NA	0	7	0	7
P-0035065-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39909442	42875047	Intron of ERG(-):38Kb after exon 3	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4830:TMPRSS2_c.39+38144:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2965605	NA	0	65	10	70
P-0035071-T01-IM6	SOMATIC	FGFR2	USO1	10	4	123242036	76634601	Intron of FGFR2(-):1Kb after exon 17	IGR: 15Kb before USO1(+)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(4;10)(q21.1;q26.13)(chr4:g.76634601::chr10:g.123242036)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	27
P-0035078-T01-IM6	SOMATIC	AGO2	DENND3	8	8	141551511	142022551	Intron of AGO2(-):54bp before exon 15	IGR: 116Kb before DENND3(+)	GRCh37	DELETION	AGO2 (NM_012154): c.1840-54_chr8: g.142022551del	IMPPRECISE		MANUAL_OK	3to5	-	471040	NA	0	6	0	6
P-0035089-T02-IM6	SOMATIC	EWSR1	CREB1	22	2	29684324	208437783	Intron of EWSR1(+):270bp before exon 9	Intron of CREB1(+):2Kb before exon 7	GRCh37	TRANSLOCATION	CREB1 (NM_052854) - EWSR1 (NM_013986) Fusion: t(2;22)(q33.3;q12.2)(chr2:g.208437783::chr22:g.29684324)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CREB1:EWSR1}	0	NA	0	5	9	5
P-0035093-T01-IM6	SOMATIC	YAP1	TBX15	11	1	102076978	119374897	Intron of YAP1(+):173bp after exon 5	IGR: 51Kb before TBX15(-)	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(1;11)(p12;q22.1)(chr1:g.119374897::chr11:g.102076978)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	7	0	7
P-0035098-T01-IM6	SOMATIC	EWSR1	KLF15	22	3	29688107	126072723	Intron of EWSR1(+):18bp before exon 11	5-UTR of KLF15(-):10Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(3;22)(q21.3;q12.2)(chr3:g.126072723::chr22:g.29688107)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:KLF15}	0	NA	0	65	10	61
P-0035107-T01-IM6	SOMATIC	BCL2	SERPINB3	18	18	60985480	61340025	Exon 2 of BCL2(-)	IGR: 18Kb before SERPINB3(-)	GRCh37	INVERSION	BCL2(NM_000633)  Rearrangement : c.420:BCL2_chr18:g.61340025inv	PRECISE		MANUAL_OK	3to3	-	354545	NA	0	48	10	48
P-0035118-T01-IM6	SOMATIC	ASCC3	DCUN1D1	6	3	100978161	182683416	Intron of ASCC3(-):10Kb after exon 37	Exon 2 of DCUN1D1(-)	GRCh37	TRANSLOCATION	DCUN1D1 (NM_020640) rearrangement: t(3;6)(q26.33;q16.3)(chr3:g.182683416::chr6:g.100978161)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	5	0	6
P-0035118-T01-IM6	SOMATIC	KDM6A	PORCN	X	X	44732842	48353211	Exon 1 of KDM6A(+)	IGR: 14Kb before PORCN(+)	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.45:KDM6A_chrX:g.48353211inv	PRECISE		MANUAL_OK	5to5	-	3620369	NA	0	23	10	34
P-0035151-T01-IM6	SOMATIC	DAOA-AS1	APC	13	5	105759777	112173891	IGR: 352Kb before DAOA-AS1(-)	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) Rearrangement : t(5;13)(q22.1;q13.2)(chr5:g.112173891::chr13:g.105759777)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	10	8
P-0035153-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138548248	140491093	Intron of KIAA1549(-):2Kb before exon 16	Intron of BRAF(-):3Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) Fusion (KIAA1549 exon15 fused with BRAF exon9) : c.4930-2046:KIAA1549_c.1140+3015:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1942845	NA	0	250	10	271
P-0035160-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50915440	50920167	Intron of POLD1(+):1Kb before exon 18	Intron of POLD1(+):134bp before exon 25	GRCh37	DELETION	POLD1 (NM_002691) rearrangement: c.2155-1243_c.3068-135del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	4727	NA	0	5	10	5
P-0035160-T01-IM6	SOMATIC	TEK	DDX58	9	9	27169609	32488052	Exon 4 of TEK(+)	Exon 8 of DDX58(-)	GRCh37	INVERSION	TEK (NM_000459) - DDX58 (NM_014314) rearrangement: c.610:TEK_c.1103:DDX58inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TEK:DDX58}	5318443	NA	0	9	10	8
P-0035170-T01-IM6	SOMATIC	KDM6A	PIGL	X	17	44949188	16127247	Intron of KDM6A(+):13bp after exon 25	Intron of PIGL(+):6Kb after exon 1	GRCh37	TRANSLOCATION	KDM6A (NM_021140) - PIGL (NM_004278) Rearrangement : t(X,17)(p11.23; p12) (chrX:g.44949188::chr17:g.16127247)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KDM6A:PIGL}	0	NA	0	12	10	12
P-0035220-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098777	178100337	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):1Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-1338_c.268dup	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1560	NA	0	5	10	5
P-0035221-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39897486	42874805	Intron of ERG(-):50Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4689:TMPRSS2_c.39+50100:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2977319	NA	0	11	10	11
P-0035241-T01-IM6	SOMATIC	SMPD3	CDH1	16	16	68455081	68849551	5-UTR of SMPD3(-):60Kb before coding start	Exon 10 of CDH1(+)	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement: chr16:g.68455081_c.1454dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	394470	NA	0	4	10	5
P-0035288-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	38945142	39075191	Exon 35 of RICTOR(-)	Promoter of RICTOR(-):137Kb from tx start	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: c.-712_c.4662del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	130049	NA	0	11	10	11
P-0035289-T01-IM6	SOMATIC	CAMSAP1	NOTCH1	9	9	138782419	139397392	Intron of CAMSAP1(-):7Kb before exon 2	Intron of NOTCH1(-):241bp after exon 27	GRCh37	DUPLICATION	CAMSAP1 (NM_015447) - NOTCH1 (NM_017617) rearrangement: c.161-7495:CAMSAP1_c.5167+242:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CAMSAP1:NOTCH1}	614973	NA	0	231	10	289
P-0035290-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152265640	152332788	Exon 5 of ESR1(+)	Intron of ESR1(+):2bp before exon 6	GRCh37	DELETION	ESR1 (NM_001122740) rearrangement: c.1093_c.1097-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	67148	NA	0	3	7	3
P-0035378-T01-IM6	SOMATIC	BRCA1	CA10	17	17	41251694	49903825	Intron of BRCA1(-):97bp after exon 7	Intron of CA10(-):79Kb before exon 4	GRCh37	DUPLICATION	BRCA1 (NM_007294) - CA10 (NM_001082533) rearrangement: c.547+98:BRCA1_c.280-78647:CA10dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BRCA1:CA10}	8652131	NA	0	10	10	10
P-0035378-T01-IM6	SOMATIC	VHL	IRAK2	3	3	10191575	10218688	Exon 3 of VHL(+)	Intron of IRAK2(+):833bp before exon 2	GRCh37	DUPLICATION	IRAK2 (NM_001570) - VHL (NM_000551) : c.95-834:IRAK2_c.568:VHLdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IRAK2:VHL}	27113	NA	0	4	10	11
P-0035383-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52432893	52439909	Promoter of BAP1(-):2Kb from tx start	Exon 10 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: chr3:g.3:52432893_c.803del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7016	NA	0	22	10	23
P-0035445-T01-IM6	SOMATIC	NF1	DGKH	17	13	29548947	42642733	Exon 15 of NF1(+)	Intron of DGKH(+):20Kb after exon 2	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - DGKH (NM_178009) rearrangement: t(13;17)(q14.11;q11.2)(chr13:g.42642733::chr17:g.29548947)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:DGKH}	0	NA	0	5	10	7
P-0035445-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39854421	42874445	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4329:TMPRSS2_c.18+15866:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3020024	NA	0	110	10	120
P-0035485-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162824112	163148626	Intron of PARK2(-):40Kb after exon 2	Intron of PARK2(-):67bp after exon 1	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.7+68_c.171+40230del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	324514	NA	0	8	10	9
P-0035489-T01-IM6	SOMATIC	CRAMP1L	TSC2	16	16	1723293	2134268	Intron of CRAMP1L(+):588bp before exon 20	Exon 34 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) - CRAMP1L (NM_020825) Rearrangement : c.4045:TSC2_c.3646-589:CRAMP1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSC2:CRAMP1L}	410975	NA	0	19	10	22
P-0035514-T01-IM6	SOMATIC	SMAD2	SMAD2	18	18	45389280	45395846	Intron of SMAD2(-):2Kb after exon 6	Intron of SMAD2(-):39bp before exon 4	GRCh37	DUPLICATION	SMAD2 (NM_001003652) rearrangement: c.327-39_c.730+2150dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6566	NA	0	36	10	36
P-0035514-T01-IM6	SOMATIC	MED20	CCND3	6	6	41884989	41904506	Intron of MED20(-):312bp before exon 2	Intron of CCND3(-):73bp before exon 4	GRCh37	DUPLICATION	MED20 (NM_004275) - CCND3 (NM_001760) rearrangement: c.15-312:MED20_c.575-73:CCND3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MED20:CCND3}	19517	NA	0	25	10	25
P-0035516-T01-IM6	SOMATIC	STK11	STK11	19	19	1220576	1222933	Intron of STK11(+):3bp before exon 5	Intron of STK11(+):50bp before exon 8	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.598-4_c.921-51inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2357	NA	0	15	10	15
P-0035520-T01-IM6	SOMATIC	FARP1	WT1	13	11	98901836	32439110	Intron of FARP1(+):36Kb after exon 2	Intron of WT1(-):12bp after exon 4	GRCh37	TRANSLOCATION	WT1 (NM_024426) - FARP1 (NM_005766) rearrangement: t(11;13)(p13;q32.3)(chr11:g.32439110::chr13:g.98901836)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {WT1:FARP1}	0	NA	1	52	10	59
P-0035520-T01-IM6	SOMATIC	RB1	RB1	13	13	48953728	48960602	Intron of RB1(+):1bp before exon 14	Intron of RB1(+):5Kb after exon 17	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1333-2_c.1695+5023dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	6874	NA	0	66	10	68
P-0035527-T01-IM6	SOMATIC	RFC3	RB1	13	13	34574296	49050972	IGR: 182Kb before RFC3(+)	Exon 25 of RB1(+)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.2656:RB1_chr13:g.34574296inv	PRECISE		MANUAL_OK	3to3	-	14476676	NA	0	55	10	53
P-0035527-T01-IM6	SOMATIC	TP53	TP53	17	17	7576970	7581782	Intron of TP53(-):44bp before exon 9	5-UTR of TP53(-):9Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.920-44:TP53_chr17:g.7581782del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4812	NA	0	26	10	37
P-0035528-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56435392	56462849	Exon 9 of RNF43(-)	Intron of RNF43(-):14Kb before exon 3	GRCh37	DELETION	RNF43 (NM_017763)  rearrangement: c.253-14455_c.1745del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27457	NA	0	37	10	37
P-0035552-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88651251	12020963	Intron of NTRK3(-):18Kb after exon 13	Intron of ETV6(+):1Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-4 fused with NTRK3 exons 14-20): t(12;15)(p13.2;q25.3)(chr12:g.12020963::chr15:g.88651251)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	66	10	66
P-0035555-T01-IM6	SOMATIC	LIMA1	BAP1	12	3	50671403	52438048	5-UTR of LIMA1(-):101Kb before coding start	Intron of BAP1(-):138bp before exon 13	GRCh37	TRANSLOCATION	BAP1 (NM_004656) Rearrangement :  t(3;12)(p14.3;q13.3)(chr3:g.52438048::chr12:g.50671403)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	44	10	43
P-0035555-T01-IM6	SOMATIC	RBX1	TSC2	22	16	41389090	2115459	IGR: 42Kb before RBX1(+)	Intron of TSC2(+):60bp before exon 16	GRCh37	TRANSLOCATION	TSC2 (NM_000548) Rearrangement : t(16;22)(p13.3;q13.2)(chr16:g.2115459::chr22:g.41389090)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	58	10	64
P-0035563-T01-IM6	SOMATIC	PDE4A	SMARCA4	19	19	10561339	11145597	Intron of PDE4A(+):11bp after exon 5	Exon 29 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - PDE4A (NM_001111307) Rearrangement : c.3959:SMARCA4_c.670+11:PDE4Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SMARCA4:PDE4A}	584258	NA	0	6	10	6
P-0035563-T01-IM6	SOMATIC	NTRK2	CENPP	9	9	87563367	95141254	Intron of NTRK2(+):9bp before exon 18	Intron of CENPP(+):790bp before exon 4	GRCh37	DUPLICATION	CENPP (NM_001012267) - NTRK2 (NM_006180) Rearrangement : c.468-791:CENPP_c.1765-10:NTRK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CENPP:NTRK2}	7577887	NA	0	3	8	3
P-0035566-T01-IM6	SOMATIC	WDR11	FGFR2	10	10	122913765	123242665	IGR: 303Kb before WDR11(+)	Intron of FGFR2(-):546bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) Rearrangement : c.2301+547:FGFR2_chr10:g.122913765inv	PRECISE		MANUAL_OK	5to5	-	328900	NA	0	61	10	65
P-0035566-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41262877	41266319	5-UTR of CTNNB1(+):3Kb before coding start	Intron of CTNNB1(+):75bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.-48-2635_c.241+75del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3442	NA	0	4	6	4
P-0035591-T01-IM6	SOMATIC	BLM	C15orf32	15	15	91358499	93055709	Exon 22 of BLM(+)	IGR: 41Kb before C15orf32(+)	GRCh37	INVERSION	BLM (NM_000057) rearrangement: c.4244:BLM_chr15:g.93055709inv	PRECISE		MANUAL_OK	3to3	-	1697210	NA	0	16	10	20
P-0035642-T01-IM6	SOMATIC	TTC28	EWSR1	22	22	28719309	29690250	Intron of TTC28(-):17Kb before exon 3	Intron of EWSR1(+):2Kb after exon 12	GRCh37	DELETION	EWSR1 (NM_013986) - TTC28 (NM_001145418) rearrangement: c.1179+1655:EWSR1_c.382-16678:TTC28del	PRECISE		MANUAL_OK	3to5	-	970941	NA	0	16	10	20
P-0035845-T01-IM6	SOMATIC	NAB2	LRP1	12	12	57486878	57509859	Exon 5 of NAB2(+)	IGR: 12Kb before LRP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) Rearrangement : c.1176:NAB2_chr12:g.57509859inv	PRECISE		MANUAL_OK	5to5	-	22981	NA	0	106	10	121
P-0035845-T01-IM6	SOMATIC	AHRR	TERT	5	5	428303	1295317	Intron of AHRR(+):182bp after exon 8	Promoter of TERT(-):42Kb from tx start	GRCh37	INVERSION	AHRR (NM_001242412) - TERT (NM_198253) Rearrangement : c.920+182:AHRR_c.-213:TERTinv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {AHRR:TERT}	867014	NA	0	46	10	132
P-0035845-T01-IM6	SOMATIC	WHSC1L1	LETM2	8	8	38189204	38263628	Intron of WHSC1L1(-):101bp before exon 5	Intron of LETM2(+):835bp before exon 9	GRCh37	DELETION	WHSC1L1 (NM_023034) Rearrangement :  c.911-101:WHSC1L1_c.934-836:LETM2del	PRECISE		MANUAL_OK	3to5	-	74424	NA	0	29	10	31
P-0036396-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1725356	1808747	Intron of TACC3(+):46bp after exon 2	Intron of FGFR3(+):86bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+86:FGFR3_c.162+46:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	83391	NA	0	15	10	15
P-0036396-T01-IM6	SOMATIC	ETV1	TRIM24	7	7	14017227	138110300	Intron of ETV1(-):122bp before exon 5	IGR: 35Kb before TRIM24(+)	GRCh37	INVERSION	ETV1 (NM_001163147) rearrangement: c.182-122:ETV1_chr7:g.138110300inv	PRECISE		MANUAL_OK	3to3	-	124093073	NA	0	4	10	4
P-0036396-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55207931	55221978	Intron of EGFR(+):2Kb before exon 2	Intron of EGFR(+):133bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-2048_c.889+133del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	14047	NA	0	4	10	4
P-0036526-T01-IM6	SOMATIC	SIRT5	HIST1H3B	6	6	13599300	26032046	Exon 8 of SIRT5(+)	Exon 1 of HIST1H3B(-)	GRCh37	INVERSION	HIST1H3B (NM_003537) - SIRT5 (NM_012241) rearrangement: c.243:HIST1H3B_c.654:SIRT5inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {HIST1H3B:SIRT5}	12432746	NA	0	3	8	3
P-0036567-T01-IM6	SOMATIC	SND1	BRAF	7	7	127425525	140493552	Intron of SND1(+):22Kb before exon 11	Intron of BRAF(-):555bp after exon 8	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) Fusion (SND1 exon10 fused with BRAF exon9) : c.1153-22013:SND1_ c.1140+556:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13068027	NA	0	16	10	16
P-0036601-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29684137	39763136	Intron of EWSR1(+):457bp before exon 9	Intron of ERG(-):172bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39763136::chr22:g.29684137)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	10	10	7
P-0036687-T02-IM6	SOMATIC	ASXL2	PPM1G	2	2	26022503	27624866	Intron of ASXL2(-):99bp before exon 4	Intron of PPM1G(-):7Kb after exon 1	GRCh37	DELETION	PPM1G (NM_177983) - ASXL2 (NM_018263) rearrangement: c.120+7304:PPM1G_c.253-99:ASXL2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PPM1G:ASXL2}	1602363	NA	0	20	10	22
P-0036699-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39876112	42868238	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1733:TMPRSS2_c.40-58568:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2992126	NA	0	9	10	9
P-0036723-T01-IM6	SOMATIC	DNM2	SMARCA4	19	19	10941208	11132428	Intron of DNM2(+):154bp after exon 19	Exon 19 of SMARCA4(+)	GRCh37	DELETION	DNM2 (NM_001005361) - SMARCA4 (NM_003072) fusion: c.2543+154:DNM2_c.2644:SMARCA4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNM2:SMARCA4}	191220	NA	0	46	10	46
P-0036756-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821998	42877290	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2587:TMPRSS2_c.19-4454:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3055292	NA	0	44	10	45
P-0036757-T01-IM6	SOMATIC	PDE3A	RECQL	12	12	20757854	21639295	Intron of PDE3A(+):9Kb before exon 3	Intron of RECQL(-):117bp after exon 6	GRCh37	DELETION	RECQL (NM_032941) rearrangement: c.501+118:RECQL_chr12:g.20757854del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	881441	NA	0	4	8	4
P-0036760-T01-IM6	SOMATIC	TP53	TP53	17	17	7576780	7578413	Intron of TP53(-):72bp after exon 9	Exon 5 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.517_c.993+73del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1633	NA	0	34	10	106
P-0036762-T01-IM6	SOMATIC	ANKRD11	MTMR14	16	3	89346372	9730549	Exon 9 of ANKRD11(-)	Intron of MTMR14(+):78bp before exon 16	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(3;16)(p25.3;q24.3)(chr3:g.9730549::chr16:g.89346372)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	24	10	24
P-0036777-T01-IM6	SOMATIC	NF1	NF1	17	17	29550293	29608735	Intron of NF1(+):168bp before exon 16	Intron of NF1(+):16Kb after exon 36	GRCh37	DUPLICATION	NF1 (NM_001042492) Rearrangement : c.1722-169_c.4835+16378dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 21 exons : in frame	58442	NA	0	110	0	126
P-0036786-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11141575	11228604	Intron of SMARCA4(+):6bp after exon 25	Intron of LDLR(+):930bp after exon 12	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) fusion: c.3546+6:SMARCA4_c.1845+930:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SMARCA4:LDLR}	87029	NA	0	3	6	3
P-0036788-T01-IM6	SOMATIC	TERT	DAP	5	5	1295334	10776235	Promoter of TERT(-):42Kb from tx start	IGR: 97Kb before DAP(-)	GRCh37	INVERSION	TERT (NM_198253) Rearrangement: c.-230:TERT_chr5:g.10776235inv	PRECISE		MANUAL_OK	3to3	-	9480901	NA	0	5	10	5
P-0036791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869156	42873619	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3503:TMPRSS2_c.18+1131:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004463	NA	0	41	10	41
P-0036807-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10597643	10600400	Intron of KEAP1(-):149bp before exon 6	Exon 4 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1455_c.1709-149del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2757	NA	0	130	10	139
P-0036808-T01-IM6	SOMATIC	SLC1A1	PTPRD	9	9	4523083	8492920	Intron of SLC1A1(+):21Kb before exon 2	Exon 27 of PTPRD(-)	GRCh37	DUPLICATION	PTPRD (NM_002839) - SLC1A1 (NM_004170) rearrangement: c.2409:PTPRD_c.92-21484:SLC1A1dup	PRECISE		MANUAL_OK	5to3	-	3969837	NA	0	9	10	11
P-0036814-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78429328	78431124	Exon 13 of FUBP1(-)	Intron of FUBP1(-):209bp before exon 8	GRCh37	DUPLICATION	FUBP1 (NM_003902) rearrangement: c.474-209_c.1114dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1796	NA	0	35	10	37
P-0036827-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63554389	63555720	Exon 2 of AXIN2(-)	5-UTR of AXIN2(-):30Kb before coding start	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.-116-866_c.350del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1331	NA	0	57	10	63
P-0036827-T01-IM6	SOMATIC	APC	SRP19	5	5	112177819	112190800	Exon 16 of APC(+)	IGR: 6Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038): c.6528_chr5:g.112190800del	PRECISE		MANUAL_OK	3to5	-	12981	NA	0	10	10	10
P-0036828-T01-IM6	SOMATIC	NF1	NF1	17	17	29550651	29554426	Intron of NF1(+):66bp after exon 16	Intron of NF1(+):114bp before exon 20	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1845+66_c.2326-115dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	3775	NA	0	46	10	51
P-0036845-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52439308	52446650	Exon 11 of BAP1(-)	Promoter of BAP1(-):12Kb from tx start	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.934_chr3:g.52446650del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7342	NA	0	169	10	184
P-0036867-T01-IM6	SOMATIC	PTCSC3	NKX2-1	14	14	36676003	36986915	IGR: 71Kb before PTCSC3(-)	Exon 3 of NKX2-1(-)	GRCh37	DELETION	NKX2-1 (NM_001079668) Rearrangement : c.774_chr14:g.36676003del	PRECISE		MANUAL_OK	3to5	-	310912	NA	0	97	10	178
P-0036871-T01-IM6	SOMATIC	NF2	NF2	22	22	30000044	30004174	Exon 1 of NF2(+)	Intron of NF2(+):4Kb after exon 1	GRCh37	DELETION	NF2 (NM_000268) Rearrangement : c.57_.114+4073del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4130	NA	0	5	10	5
P-0036871-T01-IM6	SOMATIC	CDKN2A	DMRTA1	9	9	21974558	22393377	Exon 1 of CDKN2A(-)	IGR: 53Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) Rearrangement : c.194-3351:CDKN2Ap14ARF_chr9:g.22393377del	PRECISE		MANUAL_OK	3to5	-	418819	NA	0	42	10	45
P-0036876-T01-IM6	SOMATIC	PIEZO2	WHSC1L1	18	8	10849684	38153605	Intron of PIEZO2(-):6Kb after exon 7	Intron of WHSC1L1(-):135bp before exon 16	GRCh37	TRANSLOCATION	PIEZO2 (NM_022068) - WHSC1L1 (NM_023034) rearrangement: t(8;18)(p11.23;p11.21)(chr8:g.38153605::chr18:g.10849684)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PIEZO2:WHSC1L1}	0	NA	0	6	10	6
P-0036887-T01-IM6	SOMATIC	BCR	EZH1	22	17	23513917	40859970	IGR: 9Kb before BCR(+)	Intron of EZH1(-):5bp after exon 15	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(17;22)(q21.2;q11.23)(chr17:g.40859970::chr22:g.23513917)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	63	10	77
P-0036907-T01-IM6	SOMATIC	PLXDC1	STAT3	17	17	37283589	40475262	Intron of PLXDC1(-):12Kb after exon 2	Intron of STAT3(-):15bp after exon 19	GRCh37	INVERSION	STAT3 (NM_139276) Rearrangement: c.1748+16:STAT3_chr17:g.37283589inv	PRECISE		MANUAL_OK	3to3	-	3191673	NA	1	13	10	12
P-0036911-T01-IM6	SOMATIC	B2M	B2M	15	15	45007819	45010196	Exon 2 of B2M(+)	3-UTR of B2M(+):6Kb after coding stop	GRCh37	INVERSION	B2M (NM_004048) Rearrangement: c.266_c.*406inv	PRECISE		MANUAL_OK	5to5	-	2377	NA	0	10	10	12
P-0036912-T01-IM6	SOMATIC	RGS13	CDC73	1	1	192579435	193219791	IGR: 26Kb before RGS13(+)	Intron of CDC73(+):14bp before exon 17	GRCh37	DELETION	CDC73 (NM_024529) Rearrangement: c.1560-15:CDC73_chr1:g.192579435del	PRECISE		MANUAL_OK	3to5	-	640356	NA	0	34	10	36
P-0036914-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76858356	76918872	Intron of ATRX(-):2Kb before exon 23	Exon 12 of ATRX(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.4119_c.5567-2323del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	60516	NA	0	63	10	66
P-0036929-T01-IM6	SOMATIC	TFE3	SHROOM4	X	X	48894420	50388392	Intron of TFE3(-):1Kb after exon 5	Intron of SHROOM4(-):7Kb before exon 3	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.885+1115:TFE3_chrX:g.50388392del	PRECISE		MANUAL_OK	3to3	-	1493972	NA	0	8	10	10
P-0036959-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11916340	12010463	Intron of ETV6(+):11Kb after exon 2	Intron of ETV6(+):4Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.163+10827_c.463+3968del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	94123	NA	0	6	10	6
P-0036962-T01-IM6	SOMATIC	NCOA3	KCNB1	20	20	46265588	47954681	Intron of NCOA3(+):82bp after exon 12	IGR: 34Kb before KCNB1(-)	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.2376+82:NCOA3_chr20:g.47954681del	PRECISE		MANUAL_OK	3to5	-	1689093	NA	0	11	10	11
P-0036963-T01-IM6	SOMATIC	PAX8	ACMSD	2	2	113984640	135527206	Intron of PAX8(-):91bp after exon 10	IGR: 69Kb before ACMSD(+)	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1189+92:PAX8_chr2:g.135527206del	PRECISE		MANUAL_OK	3to5	-	21542566	NA	0	63	10	68
P-0036970-T01-IM6	SOMATIC	ROS1	CD74	6	5	117650273	149783480	Intron of ROS1(-):218bp after exon 32	Intron of CD74(-):605bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q33.1;q22.1)(chr5:g.149783480::chr6:g.117650273)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	3	294	10	309
P-0036974-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246027157	246033931	Exon 9 of SMYD3(-)	Intron of SMYD3(-):7Kb before exon 9	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.845_c.814-6743el	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6774	NA	0	45	10	46
P-0036975-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486781	57508083	Intron of NAB2(+):30bp after exon 4	Promoter of STAT6(-):19Kb from tx start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1143+30:NAB2_chr12:g.57508083inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NAB2:STAT6}	21302	NA	0	154	10	152
P-0036978-T01-IM6	SOMATIC	TP53INP1	IL7R	8	5	95931214	35867429	IGR: 7Kb before TP53INP1(-)	Exon 3 of IL7R(+)	GRCh37	TRANSLOCATION	IL7R (NM_002185) rearrangement: t(5;8)(p13.2;q22.1)(chr5:g.35867429::chr8:g.95931214)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	8	0	8
P-0036990-T01-IM6	SOMATIC	ARID1B	TECRL	6	4	157100352	64460115	Exon 1 of ARID1B(+)	IGR: 684Kb before TECRL(-)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(4;6)(q13.1;q24.3)(chr4:g.64460115::chr6:g.157100352)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	10	33
P-0036992-T01-IM6	SOMATIC	NTRK3	ETV6	15	12	88666269	12015303	Intron of NTRK3(-):3Kb after exon 13	Intron of ETV6(+):7Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12015303::chr15:g.88666269)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	16	10	13
P-0036761-T01-IM6	SOMATIC	RARA	MAP3K3	17	17	38498999	61752118	Intron of RARA(+):6Kb before exon 3	Intron of MAP3K3(+):7Kb before exon 7	GRCh37	DELETION	RARA (NM_000964) - MAP3K3 (NM_002401) rearrangement: c.179-5569:RARA_c.503-7008:MAP3K3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RARA:MAP3K3}	23253119	NA	0	3	8	3
P-0036870-T01-IM6	SOMATIC	BRAF	PRIM2	7	6	140493232	57410815	Intron of BRAF(-):875bp after exon 8	Intron of PRIM2(+):12Kb after exon 10	GRCh37	TRANSLOCATION	PRIM2 (NM_000947) - BRAF (NM_004333) Rearrangement : t(6;7)(p11.1;q34)(chr6:g.57410815::chr7:g.140493232)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PRIM2:BRAF}	0	NA	0	13	10	13
P-0026589-T02-IM6	SOMATIC	ROS1	CD74	6	5	117646032	149782990	Intron of ROS1(-):454bp before exon 34	Intron of CD74(-):115bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) Fusion (CD74 exon6 fused to ROS1 exon34) : t(5;6)(q32;q22.1)(chr5:g.149782990::chr6:g.117646032)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	19	10	19
P-0035561-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864747	42871825	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon2 fused with ERG exon2) : c.56-1709:TMPRSS2_c.18+5540:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007078	NA	0	32	10	34
P-0036016-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55118037	55223239	Intron of EGFR(+):31Kb after exon 1	Intron of EGFR(+):283bp before exon 8	GRCh37	DELETION	EGFR vIII (NM_005228) rearrangement: c.88+30979_c.731-284del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	105202	NA	0	6	10	6
P-0036960-T01-IM6	SOMATIC	TMPRSS2	MFSD4	21	1	42867222	205560208	Intron of TMPRSS2(-):717bp before exon 3	Intron of MFSD4(+):1Kb before exon 7	GRCh37	TRANSLOCATION	MFSD4 (NM_181644) - TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q32.1;q22.3)(chr1:g.205560208::chr21:g.42867222)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MFSD4:TMPRSS2}	0	NA	0	94	10	94
P-0036960-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55209999	55221934	Exon 2 of EGFR(+)	Intron of EGFR(+):89bp after exon 7	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.109_c.889+89dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11935	NA	0	4	10	4
P-0025928-T02-IM6	SOMATIC	KIF5B	RET	10	10	32316873	43611910	Intron of KIF5B(-):482bp after exon 15	Intron of RET(+):121bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+483:KIF5B_c.2137-122:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295037	NA	0	110	10	137
P-0034480-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39894045	42871949	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11 ): c.56-1833:TMPRSS2_c.39+53541:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2977904	NA	0	20	10	21
P-0037101-T01-IM6	SOMATIC	TLN2	RPS6KB2	15	11	63122011	67201947	Intron of TLN2(+):4Kb before exon 52	Exon 13 of RPS6KB2(+)	GRCh37	TRANSLOCATION	TLN2 (NM_015059) - RPS6KB2 (NM_003952) rearrangement: t(11;15)(q13.2;q22.2)(chr11:g.67201947::chr15:g.63122011)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TLN2:RPS6KB2}	0	NA	0	82	10	79
P-0026021-T01-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	9	128392804	128434768	Intron of MAPKAP1(-):27Kb after exon 4	Exon 2 of MAPKAP1(-)	GRCh37	DELETION	MAPKAP1 (NM_001006617) rearrangement: c.86_c.498+27126del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	41964	NA	0	52	10	54
P-0036525-T01-IM6	SOMATIC	AURKA	RAB3GAP2	20	1	54958234	220440791	Intron of AURKA(-):2bp before exon 5	Intron of RAB3GAP2(-):5Kb after exon 1	GRCh37	TRANSLOCATION	RAB3GAP2 (NM_012414) - AURKA (NM_003600) rearrangement: t(1;20)(q41;q13.31)(chr1:g.220440791::chr20:g.54958234)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RAB3GAP2:AURKA}	0	NA	0	13	0	16
P-0036885-T01-IM6	SOMATIC	NRG3	NOTCH4	10	6	84452811	32163675	Intron of NRG3(+):46Kb before exon 4	Exon 30 of NOTCH4(-)	GRCh37	TRANSLOCATION	NRG3 (NM_001010848) - NOTCH4 (NM_004557) rearrangement: t(6;10)(p21.32;q23.1)(chr6:g.32163675::chr10:g.84452811)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NRG3:NOTCH4}	0	NA	0	45	0	43
P-0036885-T01-IM6	SOMATIC	TRMT1	BRD4	19	19	13217717	15349291	Intron of TRMT1(-):670bp after exon 12	Intron of BRD4(-):35bp before exon 20	GRCh37	DUPLICATION	TRMT1 (NM_001136035) - BRD4 (NM_058243) rearrangement: c.1583+671_c.4021-35dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TRMT1:BRD4}	2131574	NA	0	2	10	18
P-0036885-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36209343	36213243	Intron of KMT2B(+):60bp after exon 1	Intron of KMT2B(+):17bp before exon 4	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.363+60_c.2458-18del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	3900	NA	0	15	10	15
P-0036886-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9885476	9923456	Intron of GRIN2A(-):7Kb after exon 11	Exon 9 of GRIN2A(-)	GRCh37	DELETION	GRIN2A (NM_001134407) rearrangement: c.1831_c.2356+6658del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37980	NA	0	30	0	32
P-0036886-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78727886	78729609	Exon 6 of RPTOR(+)	Intron of RPTOR(+):2Kb after exon 6	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.731_c.830+1624del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1723	NA	0	7	10	7
P-0036886-T01-IM6	SOMATIC	CUL3	CUL3	2	2	225346601	225352581	Intron of CUL3(-):7bp after exon 14	Intron of CUL3(-):6Kb before exon 14	GRCh37	INVERSION	CUL3 (NM_003590) rearrangement: c.1843-5786_c.2029+8inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5980	NA	0	67	10	88
P-0036886-T01-IM6	SOMATIC	BRAF	AGK	7	7	140494309	141266226	Intron of BRAF(-):42bp before exon 8	Intron of AGK(+):11Kb after exon 2	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) rearrangement: c.101+10859:AGK_c.981-42:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	771917	NA	0	116	10	116
P-0036886-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151860961	151867100	Intron of KMT2C(-):50bp before exon 43	Intron of KMT2C(-):766bp before exon 41	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.9454-766_c.9751-50del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	6139	NA	0	38	10	38
P-0036886-T01-IM6	SOMATIC	FAM58A	CLVS1	X	8	152859987	62373134	Intron of FAM58A(-):17bp after exon 3	Intron of CLVS1(+):2Kb after exon 5	GRCh37	TRANSLOCATION	FAM58A (NM_152274) rearrangement: t(X;8)(q28;q12.3)(chrX:g.152859987::chr8:g.62373134)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	49	10	49
P-0037221-T01-IM6	SOMATIC	GNAS	NRSN1	20	6	57485762	23651200	Exon 13 of GNAS(+)	IGR: 475Kb before NRSN1(+)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(6;20)(p22.3;q13.32)(chr6:g.23651200::chr20:g.57485762)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	136	10	138
P-0037370-T01-IM6	SOMATIC	APC	APC	5	5	112175835	112177457	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4544_c.6166del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1622	NA	0	15	10	17
P-0009797-T01-IM5	SOMATIC	CDK12	CDK12	17	12	37618695	26664741	Exon 1 of CDK12(+)	Intron of ITPR2(-): 17Kb before exon 38	GRCh37	TRANSLOCATION	CDK12 (NM_016507) Rearrangement :  t(12;17)(p11.23;q12)(chr12:g.26664741::chr17:g. 37618695)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	18	0	18
P-0010846-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11170861	11172457	Exon 32 of SMARCA4(+)	Intron of SMARCA4(+): 3bp before exon 33	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4909_c.4912-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1596	NA	0	89	108	88
P-0010972-T01-IM5	SOMATIC	ASXL1	ASXL1	20	20	30961846	31021634	Intron of ASXL1(+): 5Kb after exon 3	Exon 11 of ASXL1(+)	GRCh37	DELETION	ASXL1(NM_015338) Rearrangement : c.252+4920_ 1633del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	59788	NA	0	7	7	7
P-0010972-T01-IM5	SOMATIC	MYC	MYC	8	8	128752895	128798427	Exon 3 of MYC(+)	IGR: 8Kb before PVT1(+)	GRCh37	DELETION	MYC(NM_002467) Rearrangement :  c.1056:MYC_chr8:g.128798427del	PRECISE		MANUAL_OK	3to5	-	45532	NA	0	19	27	19
P-0011421-T01-IM5	SOMATIC	BCL2	BCL2	18	18	60977018	60985362	Intron of BCL2(-): 8Kb after exon 2	Exon 2 of BCL2(-)	GRCh37	DELETION	BCL2 (NM_000633) rearrangement: c.538_c.585+8297del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	8344	NA	0	24	34	24
P-0014138-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42866430	43305548	Exon 3 of TMPRSS2(-)	3-UTR of C2CD2(-): 4Kb after coding stop	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : c.202:TMPRSS2_chr21:g.43305548del	PRECISE		MANUAL_OK	3to5	-	439118	NA	0	15	43	15
P-0018335-T01-IM6	SOMATIC	ATM	RAD50	11	5	108117766	131979349	Exon 8 of ATM(+)	3-UTR of RAD50(+):86Kb after coding stop	GRCh37	TRANSLOCATION	ATM (NM_000051) - RAD50 (NM_005732) rearrangement: t(5;11)(q31.1;q22.3)(chr5:g.131979349::chr11:g.108117766)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0037688-T01-IM6	SOMATIC	PIK3C2G	FBXO16	12	8	18552829	28324745	Intron of PIK3C2G(+):48bp after exon 15	Intron of FBXO16(-):3Kb before exon 3	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) -FBXO16 (NM_172366) Rearrangement: t(8,12)(p11.22; q12)(chr8:g.28324745::chr12:g.18552829)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PIK3C2G:FBXO16}	0	NA	0	32	10	32
P-0037688-T01-IM6	SOMATIC	STK19	C4A	6	6	31948448	31963776	Exon 7 of STK19(+)	Exon 26 of C4A(+)	GRCh37	DELETION	STK19 (NM_004197) -C4A( (NM_007293) Rearrangement : c.919:STK19_c.3275:C4Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STK19:C4A}	15328	NA	0	4	10	7
P-0037762-T01-IM6	SOMATIC	PDCD1	PDCD1	2	2	242793230	242810759	Exon 5 of PDCD1(-)	Promoter of RTP5(+):1Kb from tx start	GRCh37	INVERSION	PDCD1 (NM_005018): Rearrangement: c.847:PDCD1_chr2:g.242810759inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RTP5:PDCD1}	17529	NA	0	6	10	6
P-0037767-T01-IM6	SOMATIC	CA10	RECQL4	17	8	50212204	145742559	Intron of CA10(-):23Kb after exon 1	Exon 4 of RECQL4(-)	GRCh37	TRANSLOCATION	CA10 (NM_001082533) - RECQL4 (NM_004260) rearrangement: t(8;17)(q24.3;q21.33)(chr8:g.145742559::chr17:g.50212204)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CA10:RECQL4}	0	NA	0	14	10	14
P-0037777-T01-IM6	SOMATIC	KMT2B	MLL5	19	7	36224589	104695690	Intron of KMT2B(+):2bp after exon 29	Intron of KMT2E(+):7Kb before exon 3	GRCh37	TRANSLOCATION	KMT2B (NM_014727) - MLL5 (NM_018682) rearrangement: t(7;19)(q22.3;q13.12)(chr7:g.104695690;chr19:g.36224589)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KMT2B:KMT2E}	0	NA	0	8	0	8
P-0037831-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151875002	151877411	Exon 38 of KMT2C(-)	Intron of KMT2C(-):200bp before exon 37	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.7150-200_c.7150-200del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2409	NA	0	29	10	29
P-0037861-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14219638	14627553	Intron of PRKACA(-):1Kb before exon 2	Exon 2 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.517:DNAJB1_c.47-1417:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJB1:PRKACA}	407915	NA	0	19	10	31
P-0032827-T03-IM6	SOMATIC	APC	SRP19	5	5	112176002	112200782	Exon 16 of APC(+)	Intron of SRP19(+):353bp after exon 4	GRCh37	DELETION	APC (NM_000038) - SRP19 (NM_001204199) rearrangement: c.4711:APC_c.301+353:SRP19del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	24780	NA	0	8	10	8
P-0037664-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857943	42870416	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):300bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-300_c.556+2378inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12473	NA	0	56	10	61
P-0037818-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3644966	3823744	Intron of SLX4(-):366bp before exon 10	Intron of CREBBP(-):7bp after exon 13	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2463+8:CREBBP_c.2014-366:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CREBBP:SLX4}	178778	NA	0	85	10	383
P-0038013-T01-IM6	SOMATIC	TEK	TEK	9	9	16340059	27169375	IGR: 69Kb before BNC2(-)	Intron of TEK(+):99bp before exon 4	GRCh37	INVERSION	TEK (NM_000459) Rearrangment: c.476-100:TEK_chr9:g.16340059inv	PRECISE		MANUAL_OK	5to5	-	10829316	NA	0	34	10	34
P-0037800-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265013	41266391	5-UTR of CTNNB1(+):546bp before coding start	Intron of CTNNB1(+):53bp before exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.242-54:CTNNB1_chr3:g.41265013del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1378	NA	0	7	8	7
P-0037803-T01-IM6	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21974509	22066617	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):54Kb before coding start	GRCh37	DELETION	CDKN2Ap14ARF (NM_058195) rearrangement: c.317-3302:CDKN2Ap14ARF_chr9:g.22066617del	PRECISE		MANUAL_OK	3to5	-	92108	NA	0	16	10	17
P-0037803-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21974509	22066617	Exon 1 of CDKN2Ap16INK4A(-)	5'-UTR of CDKN2B-AS1(+):54Kb before coding start	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.150+168:CDKN2Ap16INK4A_chr9:g.22066617del	PRECISE		MANUAL_OK	3to5	-	92108	NA	0	16	10	17
P-0004224-T02-IM6	SOMATIC	RBM10	RBM10	X	6	47034490	21827555	Exon 6 of RBM10(+)	5-UTR of CASC15(+):367Kb before coding start	GRCh37	TRANSLOCATION	RBM10 (NM_001204468) rearrangement : t(X;6)(Xp11.23;6p22.3)(chrX:g.47034490::chr6:g.21827554)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RBM10:CASC15}	0	NA	0	217	10	251
P-0031827-T03-IM6	SOMATIC	EML4	ALK	2	2	29446646	42527742	Intron of ALK(-):252bp before exon 20	Intron of EML4(+):638bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-639:EML4_c.3173-252:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081096	NA	0	132	10	132
P-0031932-T03-IM6	SOMATIC	RTEL1	RTEL1	20	20	62310376	62320863	Intron of RTEL1(+):677bp after exon 12	Exon 23 of RTEL1(+)	GRCh37	DUPLICATION	RTEL1 (NM_032957) rearrangement: c.1109+677_c.1959dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10487	NA	0	3	5	3
P-0037914-T01-IM6	SOMATIC	TNFRSF14	PLXNA2	1	1	2489056	208364734	Intron of TNFRSF14(+):108bp before exon 2	Intron of PLXNA2(-):19Kb after exon 3	GRCh37	INVERSION	TNFRSF14 (NM_003820) - PLXNA2 (NM_025179) rearrangement: c.70-109:TNFRSF14_c.1371+18891:PLXNA2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TNFRSF14:PLXNA2}	205875678	NA	0	3	5	3
P-0037970-T01-IM6	SOMATIC	CD274	CD274	9	9	2174635	5457097	Intron of SMARCA2(+):4Kb after exon 29	Exon 3 of CD274(+)	GRCh37	INVERSION	CD274 (NM_014143) rearrangement: c.71:CD274_chr9:g.2174635inv	PRECISE		MANUAL_OK	5to5	-	3282462	NA	0	9	10	11
P-0037971-T01-IM6	SOMATIC	RICTOR	TTC33	5	5	38946536	40729443	Intron of RICTOR(-):33bp after exon 33	Intron of TTC33(-):865bp before exon 4	GRCh37	DUPLICATION	RICTOR (NM_152756) - TTC33 (NM_012382) rearrangement: c.4399+34:RICTOR_c.304-865:TTC33dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RICTOR:TTC33}	1782907	NA	0	4	9	4
P-0038012-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39936477	42870000	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):45bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+46:TMPRSS2_c.39+11109:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2933523	NA	0	18	10	18
P-0037982-T01-IM6	SOMATIC	EML4	ALK	2	2	29446479	42528243	Intron of ALK(-):85bp before exon 20	Intron of EML4(+):137bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-138:EML4_c.3173-85:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081764	NA	0	97	10	97
P-0037983-T01-IM6	SOMATIC	AR	AR	X	X	66764311	66765277	5-UTR of AR(+):677bp before coding start	Exon 1 of AR(+)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.289:AR_chrX:g.66764311del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	966	NA	0	64	0	77
P-0037048-T02-IM6	SOMATIC	TFE3	ASPSCR1	X	17	48893253	79967177	Intron of TFE3(-):1Kb before exon 6	Intron of ASPSCR1(+):110bp after exon 8	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - ASPSCR1 (NM_001251888) rearrangement: t(17;X)(q25.3;p11.23)(chr17:g.79967177::chrX:g.48893253)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TFE3:ASPSCR1}	0	NA	0	18	10	21
P-0038044-T01-IM6	SOMATIC	ERG	ERG	21	13	39772291	104080776	Intron of ERG(-):204bp after exon 6	Promoter of LINC01309(+):3Kb from tx start	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(13;21)(q33.1;q22.2)(chr13:g.104080776::chr21:g.39772291)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC01309:ERG}	0	NA	0	6	10	6
P-0038047-T01-IM6	SOMATIC	RB1	RB1	13	13	49047516	49055407	Exon 24 of RB1(+)	3-UTR of RB1(+):177Kb after coding stop	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2510:RB1_chr13:g.49055407del	PRECISE		MANUAL_OK	3to5	-	7891	NA	0	15	10	15
P-0038047-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46259437	46267841	Intron of NCOA3(+):3Kb after exon 8	Exon 14 of NCOA3(+)	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.823+2670_c.2602del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8404	NA	0	28	10	33
P-0037407-T01-IM6	SOMATIC	APOBEC1	PIK3C2G	12	12	7803934	18446782	Intron of APOBEC1(-):197bp before exon 4	Intron of PIK3C2G(+):52bp before exon 5	GRCh37	INVERSION	APOBEC1 (NM_001644) - PIK3C2G (NM_004570) rearrangement: c.443-197:APOBEC1_c.920-53:PIK3C2Ginv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {APOBEC1:PIK3C2G}	10642848	NA	0	25	10	27
P-0004742-T02-IM6	SOMATIC	ALOX12B	KIAA0753	17	17	6511455	7979887	Intron of KIAA0753(-):212bp after exon 10	Intron of ALOX12B(-):87bp after exon 10	GRCh37	DELETION	ALOX12B (NM_001139) -  KIAA0753 (NM_014804) rearrangement: c.1362+88:ALOX12B_c.1829+213:KIAA0753del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ALOX12B:KIAA0753}	1468432	NA	0	43	0	44
P-0006328-T02-IM6	SOMATIC	FGFR2	NRBF2	10	10	64912908	123241246	Intron of NRBF2(+):362bp before exon 3	Intron of FGFR2(-):2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - NRBF2 (NM_030759) fusion: c.2302-1711:FGFR2_c.157-363NRBF2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:NRBF2}	58328338	NA	0	33	10	38
P-0021271-T02-IM6	SOMATIC	EGFL7	EGFL7	9	9	139473248	139562957	IGR: 31Kb before LINC01573(+)	Intron of EGFL7(+):51bp before exon 3	GRCh37	DELETION	EGFL7 (NM_201446) rearrangement: c.81-52:EGFL7_chr9:g.139473248del	PRECISE		MANUAL_OK	3to5	-	89709	NA	0	55	10	55
P-0038081-T01-IM6	SOMATIC	ATM	ATM	11	11	107979515	108200907	Promoter of CUL5(+):100Kb from tx start	Intron of ATM(+):33bp before exon 50	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.7308-34:ATM_chr11:g.107979515del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {CUL5:ATM}	221392	NA	0	8	0	9
P-0038083-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30709768	30713554	Intron of TGFBR2(+):3Kb before exon 5	Exon 5 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.530-3362_c.954del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3786	NA	0	36	10	36
P-0038093-T01-IM6	SOMATIC	TMEM132D	ARID1A	12	1	130356620	27023940	Intron of TMEM132D(-):31Kb after exon 1	Exon 1 of ARID1A(+)	GRCh37	TRANSLOCATION	TMEM132D (NM_133448) - ARID1A (NM_006015)  rearrangement: t(1;12)(p36.11;q24.33)(chr1:g.27023940::chr12:g.130356620)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TMEM132D:ARID1A}	0	NA	0	6	10	9
P-0038096-T01-IM6	SOMATIC	FGFR2	FGFR2	17	10	67640339	123274680	5-UTR of LINC01483(+):259Kb before coding start	Exon 9 of FGFR2(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;17)(q26.13;q24.3)(chr10:g.123274680::chr17:g.67640339)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0038096-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62318034	62324691	Intron of RTEL1(+):809bp after exon 16	Intron of RTEL1(+):55bp after exon 30	GRCh37	DUPLICATION	RTEL1 (NM_032957) rearrangement: c.1420+809_c.3064+55dup	PRECISE		MANUAL_OK	5to3	Duplication of 14 exons : in frame	6657	NA	0	58	10	59
P-0025990-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865570	42868372	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1674:TMPRSS2_c.18+4717:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3002802	NA	0	86	10	90
P-0037988-T01-IM6	SOMATIC	NF2	NF2	22	22	30043134	30060931	Intron of NF2(+):5Kb after exon 4	Intron of NF2(+):47bp before exon 9	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.447+4860_c.811-48del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	17797	NA	0	51	10	53
P-0031127-T02-IM6	SOMATIC	ERF	ERF	19	19	42756631	42810527	Intron of ERF(-):2Kb before exon 2	5-UTR of PRR19(+):3Kb before coding start	GRCh37	DELETION	ERF (NM_006494) rearrangement: c.23-1914_chr19:g.42810527del	PRECISE		MANUAL_OK	3to5	-	53896	NA	0	94	10	127
P-0031304-T02-IM6	SOMATIC	TET2	TET2	4	4	106195610	106196909	Intron of TET2(+):594bp before exon 11	Exon 11 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.4538-595_c.5242del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1299	NA	0	29	10	32
P-0034612-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683806	128659530	Intron of EWSR1(+):683bp after exon 8	Intron of FLI1(+):8Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused to FLI1 exons 6-9): t(11;22)(q24,3;q12.2)(chr11:g.128659530:;chr22:g.29683806)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	26	10	25
P-0037814-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42873514	41635815	Intron of TMPRSS2(-):3Kb before exon 2	IGR: 31Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41635815::chr21:g.42873514)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	11	0	11
P-0038127-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683923	128646529	Intron of EWSR1(+):671bp before exon 9	Intron of FLI1(+):4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused to FLI1 exons 5-9): t(11;22)(q24.3;q12.2)(chr11:g.28646529::chr22:g.29683923)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	121	10	133
P-0038131-T01-IM6	SOMATIC	EWSR1	ERG	22	21	29684367	39768812	Intron of EWSR1(+):227bp before exon 9	Intron of ERG(-):4Kb after exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion (EWSR1 exons 1-8 fused to ERG exons 7-10): t(21;22)(q22.2;q12.2)(chr21:g.39768812::chr22:g.29684367)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	37	10	37
P-0038138-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268381	55870908	Intron of EGFR(+):275bp after exon 24	Intron of SEPT14(-):2Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion (EGFR exons 1-24 fused to SEPT14 exon 10): c.2946+275:EGFR_c.1119+2043:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	602527	NA	1	1001	10	2876
P-0038152-T01-IM6	SOMATIC	TNFAIP3	TNFAIP3	6	6	138197868	138199876	Intron of TNFAIP3(+):344bp before exon 6	Exon 7 of TNFAIP3(+)	GRCh37	INVERSION	TNFAIP3 (NM_006290) rearrangement: c.806-345_c.1294inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2008	NA	0	4	7	4
P-0038155-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123239920	123979249	Intron of FGFR2(-):385bp before exon 18	Intron of TACC2(+):3Kb after exon 10	GRCh37	DUPLICATION	FGFR2 (NM_000141) rearrangement: c.2302-385:FGFR2_chr10:g.123979249dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	739329	NA	0	237	10	351
P-0038157-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	26773808	27023761	Intron of DHDDS(+):241bp before exon 6	Exon 1 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.867:ARID1A_chr1:g.26773808inv	PRECISE		MANUAL_OK	5to5	-	249953	NA	0	34	10	54
P-0011429-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39860560	42876142	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3735:TMPRSS2_c.18+9727:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015582	NA	0	211	10	226
P-0025859-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739462	1800997	Intron of TACC3(+):33bp after exon 10	Exon 3 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) rearrangement: c.126:FGFR3_c.1941+33:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	61535	NA	0	16	10	20
P-0034813-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865853	42876420	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3457:TMPRSS2_c.18+4434:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3010567	NA	0	163	10	175
P-0034813-T03-IM6	SOMATIC	CDKN1B	CDKN1B	X	12	9499399	12871320	5-UTR of TBL1X(+):123Kb before coding start	Intron of CDKN1B(+):72bp after exon 1	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(12;X)(p13.1;p22.31)(chr12:g.12871320::chrX:g.9499399)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CDKN1B:TBL1X}	0	NA	0	59	10	59
P-0037894-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	151930587	156835291	IGR: 25Kb before S100A10(-)	Intron of NTRK1(+):700bp after exon 3	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.359+700:NTRK1_chr1:g.151930587del	PRECISE		MANUAL_OK	3to5	-	4904704	NA	0	24	10	28
P-0038179-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874137	42873819	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3703:TMPRSS2_c.40-56593:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999682	NA	0	76	10	82
P-0038194-T01-IM6	SOMATIC	CDK5RAP2	BRAF	9	7	123187156	140484954	Intron of CDK5RAP2(-):2Kb before exon 26	Intron of BRAF(-):2Kb before exon 10	GRCh37	TRANSLOCATION	CDK5RAP2 (NM_018249) - BRAF (NM_004333) rearrangement: t(7;9)(q34;q33.2)(chr7:g.140484954::chr9:g.123187156)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CDK5RAP2:BRAF}	0	NA	0	46	10	48
P-0038195-T01-IM6	SOMATIC	MAP2K1	MAP2K1	15	15	50987680	66774180	IGR: 12Kb before SPPL2A(-)	Exon 6 of MAP2K1(+)	GRCh37	INVERSION	MAP2K1 (NM_002755) rearrangement: c.656:MAP2K1_chr15:g.50987680inv	PRECISE		MANUAL_OK	3to3	-	15786500	NA	0	2	5	2
P-0038198-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	1	42872071	47143557	Intron of TMPRSS2(-):2Kb before exon 2	3-UTR of EFCAB14(-):575bp after coding stop	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(p33;q22.3)(chr1:g.47143557::chr21:g.42872071)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	120	10	136
P-0038204-T01-IM6	SOMATIC	PTPRD	PTPRD	10	9	67541496	8521187	IGR: 131Kb before CTNNA3(-)	Intron of PTPRD(-):89bp after exon 20	GRCh37	TRANSLOCATION	PTPRD (NM_002839) rearrangement: t(9,10)(p24.1;q21.3)(chr9:g.8521187::chr10:g.67541496)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	21	0	21
P-0038204-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	14	11	32983149	67200806	Intron of AKAP6(+):22Kb before exon 3	Intron of RPS6KB2(+):4bp before exon 10	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) rearrangement: t(11,14)(q13.2;q12)(chr11:g.67200806::chr14:g.32983149)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	14
P-0038238-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2227096	2228028	Exon 27 of DOT1L(+)	Intron of DOT1L(+):902bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4576_c.4606+902inv	PRECISE		MANUAL_OK	5to5	-	932	NA	0	2	4	2
P-0038238-T01-IM6	SOMATIC	EP300	EP300	22	22	37681407	41531910	Intron of CYTH4(+):3Kb after exon 1	Exon 7 of EP300(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.1622_chr22:g.37681407inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3850503	NA	0	9	9	9
P-0038241-T01-IM6	SOMATIC	WHSC1	WHSC1	17	4	47043304	1978321	Intron of GIP(-):1Kb after exon 2	Exon 21 of WHSC1(+)	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) rearrangement: t(4;17)(p16.3;q21.32)(chr4:g.1978321::chr17:g.47043304)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	21	10	21
P-0038241-T01-IM6	SOMATIC	FAT1	FAT1	4	4	182881463	187522494	IGR: 178Kb before LOC90768(-)	Exon 21 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11569:FAT1_chr4:g.182881463inv	PRECISE		MANUAL_OK	3to3	-	4641031	NA	0	18	10	18
P-0038243-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49430836	49432221	Intron of KMT2D(-):71bp after exon 34	Exon 34 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.8918_c.10231+72del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1385	NA	1	102	10	276
P-0038244-T01-IM6	SOMATIC	ECHDC1	MDM2	12	6	69210696	127655466	Exon 4 of MDM2(+)	Intron of ECHDC1(-):3Kb before exon 2	GRCh37	TRANSLOCATION	ECHDC1 (NM_001139510) - MDM2 (NM_002392) rearrangement: t(6;12)(q34.12;q15)(chr6:g.127655466::chr13:g.69210696)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ECHDC1:MDM2}	0	NA	0	50	10	58
P-0038248-T01-IM6	SOMATIC	EWSR1	BEND2	X	22	18240954	29683864	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):730bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -BEND2 (NM_153346) Rearrangement :  t(X;22)(p22.13; q12.2)(chrX:g.18240954::chr22:g.29683864)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	58	10	57
P-0038251-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32912369	32913805	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement : c.3877_c.5313del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1436	NA	0	2	5	1
P-0026288-T03-IM6	SOMATIC	FGFR4	CDK12	17	5	37687238	176518227	Exon 14 of CDK12(+)	Intron of FGFR4(+):122bp after exon 5	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) - CDK12 (NM_016507) rearrangement: t(5,17)(q35.2;q12)(chr5:g.176518227::chr17:g.37687238)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR4:CDK12}	0	NA	0	5	0	5
P-0035289-T03-IM6	SOMATIC	TSC1	TSC1	11	9	70053104	135786086	3-UTR of FADD(+):4Kb after coding stop	Intron of TSC1(-):7bp before exon 12	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(9,11)(q34.13;q13.3)(chr9:g.135786086::chr11:g.70053104)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	178	10	178
P-0035289-T03-IM6	SOMATIC	CAMSAP1	NOTCH1	9	9	138782419	139397392	Intron of CAMSAP1(-):7Kb before exon 2	Intron of NOTCH1(-):241bp after exon 27	GRCh37	DUPLICATION	CAMSAP1 (NM_015447) - NOTCH1 (NM_017617) rearrangement: c.161-7495:CAMSAP1_c.5167+242:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CAMSAP1:NOTCH1}	614973	NA	0	228	10	269
P-0036604-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683594	32414690	Intron of EWSR1(+):471bp after exon 8	Intron of WT1(-):389bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414690::chr22:g.29683594)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	1	94	10	157
P-0037162-T02-IM6	SOMATIC	KDM5A	KDM5A	12	12	420107	597211	Exon 21 of KDM5A(-)	Intron of B4GALNT3(+):28Kb after exon 1	GRCh37	DELETION	KDM5A (NM_005056) Rearrangement :  c.3160:KDM5A_c.169+27500: B4GALNT3del	PRECISE		MANUAL_OK	3to5	-	177104	NA	0	6	10	6
P-0037162-T02-IM6	SOMATIC	EPHA3	EPHA3	3	3	89259466	89261591	Exon 3 of EPHA3(+)	Intron of EPHA3(+):2Kb after exon 3	GRCh37	INVERSION	EPHA3 (NM_005233) Rearrangement : c.610_c.814+1921inv	PRECISE		MANUAL_OK	5to5	-	2125	NA	0	23	10	24
P-0038180-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10610577	10618594	Exon 2 of KEAP1(-)	IGR: 5Kb before S1PR5(-)	GRCh37	INVERSION	KEAP1 (NM_203500) Rearrangement: c.133:KEAP1_chr19:g.10618594inv	PRECISE		MANUAL_OK	3to3	-	8017	NA	0	165	10	174
P-0038184-T01-IM6	SOMATIC	TP53	TP53	17	17	7577243	7578113	Intron of TP53(-):88bp before exon 8	Intron of TP53(-):63bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) Rearrangement: c.672+64_c.783-88del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	870	NA	0	68	10	70
P-0038187-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120510522	145101210	Intron of NOTCH2(-):177bp after exon 7	Intron of NBPF20(+):212Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) SEC22B ( NM_004892) Rearrangement : c.1264+178:NOTCH2_c.76-2698:SEC22Binvc	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NOTCH2:NBPF20}	24590688	NA	0	9	10	11
P-0038262-T01-IM6	SOMATIC	EPHA7	CDH15	16	6	89246815	93969064	Intron of CDH15(+):52bp after exon 3	Intron of EPHA7(-):7bp after exon 10	GRCh37	TRANSLOCATION	EPHA7 (NM_004440) - CDH15 (NM_004933) fusion: t(6;16)(q16.1;q24.3)(chr6:g.93969064::chr16:g.89246815)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {EPHA7:CDH15}	0	NA	0	12	10	12
P-0038263-T01-IM6	SOMATIC	EP300	EP300	22	5	41573213	133574875	Exon 31 of EP300(+)	IGR: 13Kb before MIR3661(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) Rearrangement: t(5;22)(q31.3;q13.2)(chr5:g.133574875::chr22:g.41573213)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	91	10	116
P-0038263-T01-IM6	SOMATIC	CDKN2B	CDKN2A	9	9	21971166	22007679	Exon 2 of CDKN2A(-)	Intron of CDKN2B(-):1Kb after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) - CDKN2A ( NM_000077) Rearrangement: c.156+1118:CDKN2B_c.192:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN2B:CDKN2A}	36513	NA	0	8	10	8
P-0038342-T01-IM6	SOMATIC	JAK3	EPB42	19	15	17948717	43502826	Intron of JAK3(-):23bp after exon 12	Intron of EPB42(-):189bp before exon 5	GRCh37	TRANSLOCATION	JAK3 (NM_000215) - EPB42 (NM_001114134) rearrangement: t(15;19)(q15.2;p13.11)(chr15:g.43502826::chr19:g.17948717)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	10	8
P-0038348-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877054	42875885	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: (TMPRSS2 exon 1 fused to ERG exons 4-11): c.55+3992:TMPRSS2_c.40-59510:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2998831	NA	0	156	10	164
P-0038349-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49439907	49478928	Exon 17 of KMT2D(-)	IGR: 4Kb before DHH(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.4634_chr12:g.49478928inv	PRECISE		MANUAL_OK	3to3	-	39021	NA	0	52	10	52
P-0038349-T01-IM6	SOMATIC	NTRK3	VPS39	15	15	42466820	88483908	Intron of VPS39(-):770bp before exon 12	Exon 15 of NTRK3(-)	GRCh37	INVERSION	NTRK3 (NM_001012338) - VPS39 (NM_015289) rearrangement: c.1662:NTRK3_c.961-770:VPS39inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	46017088	NA	0	20	10	29
P-0038349-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	33128749	42874772	IGR: 85Kb before SCAF4(-)	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: chr21:g.33128749_c.56-4656inv	PRECISE		MANUAL_OK	5to5	-	9746023	NA	0	6	10	7
P-0038351-T01-IM6	SOMATIC	ERRFI1	ERRFI1	17	1	62495243	8075627	3-UTR of DDX5(-):797bp after coding stop	Exon 2 of ERRFI1(-)	GRCh37	TRANSLOCATION	ERRFI1 (NM_018948) rearrangement: t(1;17)(p36.23;q23.3)(chr1:g.8075627::chr17:g.62495243)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	15
P-0038352-T01-IM6	SOMATIC	MET	MET	7	7	116411475	116412815	Intron of MET(+):76bp before exon 13	Intron of MET(+):772bp after exon 14	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2731-77_c.3028+772del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1340	NA	0	7	10	7
P-0022955-T02-IM6	SOMATIC	IGF1R	IGF1R	15	15	98675118	99407516	IGR: 49Kb before LINC01582(-)	Intron of IGF1R(+):27Kb before exon 3	GRCh37	INVERSION	IGF1R (NM_000875) Rearrangement: c.641-27038:IGF1R_chr15:g.98675118inv	PRECISE		MANUAL_OK	3to3	-	732398	NA	0	12	10	11
P-0037389-T03-IM6	SOMATIC	GLI1	GLI1	12	12	47430985	57864277	IGR: 39Kb before AMIGO2(-)	Exon 12 of GLI1(+)	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: c.1754:GLI1_chr12:g.47430985del	PRECISE		MANUAL_OK	3to5	-	10433292	NA	0	102	10	104
P-0037389-T03-IM6	SOMATIC	SLX4	SLX4	17	16	54284985	3656474	Intron of ANKFN1(+):20Kb before exon 2	Exon 3 of SLX4(-)	GRCh37	TRANSLOCATION	SLX4 (NM_032444) rearrangement: t(16;17)(p13.3;q22)(chr16:g.3656474::chr17:g.54284985)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	40	10	43
P-0038298-T01-IM6	SOMATIC	RECQL4	RECQL4	12	8	69857749	145738716	IGR: 6Kb before FRS2(+)	Exon 15 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) Rearrangement: t(8;12)(q11.22;q15)(chr8:g.145738716::chr12:g.69857749)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	171	10	214
P-0038299-T01-IM6	SOMATIC	STAT5A	TTC7B	17	14	40458420	91189253	Exon 14 of STAT5A(+)	Intron of TTC7B(-):7Kb after exon 5	GRCh37	TRANSLOCATION	STAT5A (NM_003152) - TTC7B (NM_001010854) rearrangement: t(14;17)(q32.11;q21.2)(chr14:g.91189253::chr17:g.40458420)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {STAT5A:TTC7B}	0	NA	0	8	10	7
P-0038299-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896349	42867555	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1050:TMPRSS2_c.39+51237:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2971206	NA	0	5	10	5
P-0038318-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1732842	1808756	Intron of TACC3(+):56bp before exon 6	Intron of FGFR3(+):86bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-87:FGFR3_c.1462-57:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	75914	NA	0	75	10	77
P-0038319-T01-IM6	SOMATIC	ARHGEF17	WHSC1L1	11	8	73034925	38187156	Intron of ARHGEF17(+):12Kb after exon 1	Exon 6 of WHSC1L1(-)	GRCh37	TRANSLOCATION	ARHGEF17 (NM_014786) - WHSC1L1 (NM_023034) rearrangement: t(8;11)(p11.23;q13.4)(chr8:g.38187156::chr11:g.73034925)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARHGEF17:WHSC1L1}	0	NA	0	273	10	268
P-0038320-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486910	70557800	Exon 5 of NAB2(+)	IGR: 58Kb before LINC01481(-)	GRCh37	DUPLICATION	NAB2 (NM_005967) rearrangement: c.1208:NAB2_chr12:g.70557800dup	PRECISE		MANUAL_OK	5to3	-	13070890	NA	0	872	10	1282
P-0036669-T03-IM6	SOMATIC	EWSR1	CDADC1	22	13	29694123	49835899	Intron of EWSR1(+):184bp after exon 14	Intron of CDADC1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CDADC1 (NM_030911) rearrangement: t(13;22)(q14.2;q12.2)(chr13:g.49835899::chr22:g.29694123)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CDADC1}	0	NA	0	26	0	27
P-0036669-T03-IM6	SOMATIC	EP300	EP300	X	22	133828640	41560109	IGR: 75Kb before FAM122B(-)	Exon 22 of EP300(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(X;22)(q26.3;q13.2)(chrX:g.133828640::chr22:g.41560109)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	13
P-0038328-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348008	349553	Exon 6 of AXIN1(-)	Intron of AXIN1(-):1Kb before exon 6	GRCh37	INVERSION	AXIN1 (NM_003502) rearrangement: c.1498_c.1255-1302inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1545	NA	0	47	10	77
P-0038329-T01-IM6	SOMATIC	EPHB1	EPHB1	11	3	58655556	134920357	IGR: 40Kb before GLYATL1(+)	Exon 12 of EPHB1(+)	GRCh37	TRANSLOCATION	EPHB1 (NM_004441) translocation: t(3;11)(q22.2;q12.1)(chr3:g.134920357::chr11:g.58655556)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	10	30
P-0037436-T03-IM6	SOMATIC	EWSR1	VEZF1	22	17	29688127	56060462	Exon 11 of EWSR1(+)	Exon 2 of VEZF1(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - VEZF1 (NM_007146) rearrangement: t(17;22)(q22;q12.2)(chr17:g.56060462::chr22:g.29688127)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:VEZF1}	0	NA	0	36	10	112
P-0037991-T02-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271172	38277120	Exon 19 of FGFR1(-)	Exon 10 of FGFR1(-)	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.1308_c.2536dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5948	NA	0	121	10	148
P-0038211-T01-IM6	SOMATIC	BRD4	BRD4	19	15	15355077	34632711	Exon 13 of BRD4(-)	Promoter of SLC12A6(-):111Kb from tx start	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(15,19)(q14;p13.12)(chr15:g.34632711::chr19:g.15355077)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	210	10	238
P-0038385-T01-IM6	SOMATIC	SETD2	SETD2	20	3	43516233	47139570	5-UTR of YWHAB(+):14Kb before coding start	Exon 9 of SETD2(-)	GRCh37	TRANSLOCATION	SETD2 (NM_014159) rearrangement: t(3;20)(p21.31;q13.12)(chr3:g.47139570::chr20:g.43516233)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {YWHAB:SETD2}	0	NA	0	31	10	31
P-0038389-T01-IM6	SOMATIC	EGFR	EGFR	7	7	54872280	55268901	5-UTR of LOC100996654(+):376bp before coding start	Exon 25 of EGFR(+)	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2967:EGFR_chr7:g.54872280dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EGFR:LOC100996654}	396621	NA	0	980	10	3203
P-0038394-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43961742	117654360	Intron of SDC4(-):33bp before exon 3	Intron of ROS1(-):4Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) rearrangement: t(6;20)(q22.1;q13.12)(chr6:g.117654360::chr20:g.43961742)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	9	8	9
P-0024325-T02-IM6	SOMATIC	DNMT3A	ASXL2	2	2	25469164	25967152	Exon 11 of DNMT3A(-)	Exon 12 of ASXL2(-)	GRCh37	DUPLICATION	DNMT3A (NM_022552) - ASXL2 (NM_018263) rearrangement: c.1294:DNMT3A_c.2054:ASXL2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3A:ASXL2}	497988	NA	0	113	10	115
P-0038161-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68772250	68821221	Exon 2 of CDH1(+)	Intron of CDH1(+):14Kb before exon 3	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.99_c.164-14352del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	48971	NA	0	25	10	26
P-0038162-T01-IM6	SOMATIC	AXL	AXL	19	19	41739584	41754956	Intron of AXL(+):2Kb after exon 6	Intron of AXL(+):231bp after exon 14	GRCh37	INVERSION	AXL (NM_021913) rearrangement: c.783+2381_c.1711+231inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15372	NA	0	20	10	20
P-0038166-T01-IM6	SOMATIC	NF1	NF1	17	17	29677395	29681199	Intron of NF1(+):59bp after exon 50	Intron of NF1(+):2Kb after exon 51	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7457+59_c.7615+1767del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3804	NA	0	4	4	4
P-0038166-T01-IM6	SOMATIC	KREMEN1	CHEK2	22	22	29108034	29491205	Intron of CHEK2(-):29bp before exon 6	Intron of KREMEN1(+):797bp after exon 2	GRCh37	INVERSION	KREMEN1 (NM_032045) - CHEK2 (NM_007194) rearrangement: c.260+797:KREMEN1_c.684-29:CHEK2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {KREMEN1:CHEK2}	383171	NA	0	6	10	6
P-0038166-T01-IM6	SOMATIC	MSH3	MSH3	5	5	79970823	80037266	Exon 7 of MSH3(+)	Intron of MSH3(+):16bp before exon 11	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: c.1049_c.1569-17inv	PRECISE		MANUAL_OK	5to5	-	66443	NA	0	17	10	17
P-0038369-T01-IM6	SOMATIC	TAP1	TAP1	6	6	27816456	32821162	IGR: 10Kb before HIST1H2BN(+)	Exon 1 of TAP1(-)	GRCh37	INVERSION	TAP1 (NM_000593) rearrangement: c.432:TAP1_chr6:g.27816456inv	PRECISE		MANUAL_OK	5to5	-	5004706	NA	0	50	10	61
P-0038373-T01-IM6	SOMATIC	XIAP	XIAP	X	22	123022430	42014109	Intron of XIAP(+):38bp before exon 3	Intron of DESI1(-):3Kb after exon 1	GRCh37	TRANSLOCATION	XIAP (NM_001167) rearrangement: t(22;X)(q13.2;q25)(chr22:g.42014109::chrX:g.123022430)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	62	10	73
P-0038374-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10284465	10325900	Intron of DNMT1(-):81bp after exon 7	IGR: 6Kb before S1PR2(-)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.683+82:DNMT1_chr19:g.10325900inv	IMPPRECISE		MANUAL_OK	5to5	-	41435	NA	0	5	0	5
P-0038374-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111885153	112807418	Intron of BCL2L11(+):3Kb after exon 2	IGR: 5Kb before TMEM87B(+)	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+3437:BCL2L11_chr2:g.112807418del	IMPPRECISE		MANUAL_OK	3to5	-	922265	NA	0	6	0	6
P-0038381-T01-IM6	SOMATIC	PALB2	NME6	16	3	23632769	48342586	Exon 10 of PALB2(-)	Intron of NME6(-):199bp after exon 1	GRCh37	TRANSLOCATION	PALB2 (NM_024675) - NME6 (NM_005793) rearrangement: t(3;16)(p21.31;p12.2)(chr3:g.48342586::chr16:g.23632769)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PALB2:NME6}	0	NA	0	20	10	20
P-0038596-T01-IM6	SOMATIC	NF1	NF1	17	17	29457626	29497137	Intron of NF1(+):25Kb before exon 2	Intron of NF1(+):122bp after exon 5	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.61-25375_c.586+122dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	39511	NA	0	12	10	12
P-0018948-T02-IM6	SOMATIC	RAB35	COQ5	12	12	120536831	120947806	Intron of RAB35(-):2bp after exon 4	Intron of COQ5(-):13bp after exon 4	GRCh37	DUPLICATION	RAB35 (NM_006861) - COQ5 (NM_032314) Rearrangement : c.352+3:RAB35_c.681+14:COQ5	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RAB35:COQ5}	410975	NA	0	66	10	68
P-0018948-T02-IM6	SOMATIC	RNF43	PLXDC1	17	17	37293990	56438363	Intron of PLXDC1(-):2Kb after exon 2	Intron of RNF43(-):58bp before exon 7	GRCh37	DELETION	RNF43 (NM_017763) -PLXDC1 (NM_020405) Rearrangement : c.688-58:RNF43_c.255+1917:PLXDC1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RNF43:PLXDC1}	19144373	NA	0	8	10	8
P-0021574-T03-IM6	SOMATIC	SPEN	SPEN	1	1	16264150	16265193	Intron of SPEN(+):10bp after exon 12	Intron of SPEN(+):19bp before exon 14	GRCh37	DELETION	SPEN (NM_015001) Rearrangement :c.10509+10_c.10705-20del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1043	NA	0	13	10	13
P-0024845-T03-IM6	SOMATIC	EWSR1	WT1	22	11	29684464	32417412	Intron of EWSR1(+):130bp before exon 9	Intron of WT1(-):390bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417412::chr22:g.29684464)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	72	10	72
P-0029069-T02-IM6	SOMATIC	NUDC	ARID1A	1	1	27100051	27264019	Intron of ARID1A(+):19bp before exon 16	Intron of NUDC(+):4Kb before exon 3	GRCh37	DUPLICATION	NUDC(NM_006600) - ARID1A(NM_006015): fusion: c.160-3929:NUDC_c.3867-20ARID1Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NUDC:ARID1A}	163968	NA	0	38	10	39
P-0029069-T02-IM6	SOMATIC	TET1	TET1	10	10	70400979	70412334	Intron of TET1(+):3Kb before exon 4	Exon 6 of TET1(+)	GRCh37	DUPLICATION	TET1 (NM_030625) rearrangement: c.1969-3476_c.4444dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11355	NA	0	55	10	79
P-0029069-T02-IM6	SOMATIC	RB1	RB1	13	13	48942645	48950906	Intron of RB1(+):17bp before exon 11	Intron of RB1(+):147bp before exon 13	GRCh37	DUPLICATION	RB1 (NM_000321) Rearrangement: c.1050-18_c.1216-148dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	8261	NA	0	67	10	68
P-0029069-T02-IM6	SOMATIC	CIC	CIC	19	19	42790557	42795137	Intron of CIC(+):365bp before exon 2	Exon 10 of CIC(+)	GRCh37	DUPLICATION	CIC (NM_015125) rearrangement: c.68-366_c.2217dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4580	NA	0	184	10	207
P-0036560-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39944555	42869154	Intron of ERG(-):3Kb after exon 3	Intron of TMPRSS2(-):891bp after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) : c.126+892:TMPRSS2_c.39+3031:ERGinv	PRECISE		MANUAL_OK	3to3	-	2924599	NA	0	39	10	39
P-0038406-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981781	201984266	Exon 5 of ELF3(+)	Intron of ELF3(+):70bp before exon 9	GRCh37	INVERSION	ELF3 (NM_004433) Rearrangement : c.492_c.1002-71inv	PRECISE		MANUAL_OK	5to5	-	2485	NA	0	23	10	24
P-0038406-T01-IM6	SOMATIC	CSF3	CDK12	17	17	37676083	38172680	Intron of CDK12(+):125bp before exon 11	Intron of CSF3(+):57bp before exon 3	GRCh37	DUPLICATION	CSF3 (NM_000759) - CDK12 (NM_016507) Rearrangement : c.313-58:CSF3_c.2964-126:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CSF3:CDK12}	496597	NA	0	6	10	7
P-0038406-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874891	151953265	Exon 38 of KMT2C(-)	Intron of KMT2C(-):3Kb before exon 10	GRCh37	DELETION	KMT2C (NM_170606) Rearrangement : c.1300-3465_c.7647del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	78374	NA	0	5	6	5
P-0038411-T01-IM6	SOMATIC	CIC	NUTM1	19	15	42798499	34646705	Intron of CIC(+):43bp after exon 18	Exon 6 of NUTM1(+)	GRCh37	TRANSLOCATION	CIC (NM_015125) - NUTM1 (NM_175741) rearrangement: t(15,19)(q14;q13.2)(chr15:g.34646705::chr19:g.42798499)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CIC:NUTM1}	0	NA	0	91	10	96
P-0038414-T01-IM6	SOMATIC	ELF3	ELF3	1	1	16840713	201981509	IGR: 35Kb before MIR3675(+)	Exon 4 of ELF3(+)	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.423:ELF3_chr1:g.16840713inv	PRECISE		MANUAL_OK	5to5	-	185140796	NA	0	67	10	112
P-0038414-T01-IM6	SOMATIC	CSF3R	KIAA0319L	1	1	35931080	36938812	Intron of KIAA0319L(-):1Kb after exon 7	Intron of CSF3R(-):223bp after exon 6	GRCh37	DELETION	CSF3R (NM_000760) - KIAA0319L (NM_024874) rearrangement: c.673+224:CSF3R_c.1201+1129:KIAA0319Ldel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CSF3R:KIAA0319L}	1007732	NA	0	32	10	35
P-0038414-T01-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64135958	66694825	Exon 11 of RPS6KA4(+)	5-UTR of PC(-):78Kb before coding start	GRCh37	INVERSION	RPS6KA4 (NM_003942) rearrangement: c.1219:RPS6KA4_chr11:g.66694825inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RPS6KA4:PC}	2558867	NA	0	24	10	24
P-0038414-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740403	1808869	Intron of TACC3(+):974bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2301:FGFR3_c.1941+974:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68466	NA	0	271	10	305
P-0038415-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39832393	42877782	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2095:TMPRSS2_c.19-14849:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3045389	NA	0	90	10	92
P-0038415-T01-IM6	SOMATIC	MAP3K1	MAP3K1	7	5	79055104	56184195	Intron of MAGI2(-):27Kb after exon 1	Intron of MAP3K1(+):11bp after exon 19	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) rearrangement: t(5,7)(q11.2;q21.11)(chr5:g.56184195::chr7:g.79055104)'	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	5	0	5
P-0038417-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39882426	42873330	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-64882:ERG_c.56-3214:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2990904	NA	0	18	10	16
P-0038419-T01-IM6	SOMATIC	ZNF598	TSC2	16	16	2048504	2136668	Exon 14 of ZNF598(-)	Intron of TSC2(+):64bp before exon 38	GRCh37	INVERSION	ZNF598 (NM_178167) - TSC2 (NM_000548) rearrangement: c.2446:ZNF598_c.4850-65:TSC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ZNF598:TSC2}	88164	NA	0	3	9	4
P-0038419-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52584458	52599718	Exon 29 of PBRM1(-)	Intron of PBRM1(-):1Kb before exon 24	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.3617-1469_c.4555del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15260	NA	0	8	10	8
P-0038467-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27097244	27097885	Intron of ARID1A(+):365bp before exon 12	Intron of ARID1A(+):68bp after exon 12	GRCh37	INVERSION	ARID1A (NM_006015) Rearrangement: c.3199-366_c.3199-366inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	641	NA	0	19	10	26
P-0038695-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3651365	3898722	Intron of SLX4(-):173bp before exon 5	Intron of CREBBP(-):2Kb after exon 2	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) fusion: c.798+1576:CREBBP_c.951-173:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CREBBP:SLX4}	247357	NA	0	51	10	55
P-0032097-T02-IM6	SOMATIC	RB1	RB1	13	13	48878237	55149784	Intron of RB1(+):52bp after exon 1	IGR: 264Kb before MIR1297(-)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.137+52:RB1_chr13:g.55149784inv	PRECISE		MANUAL_OK	3to3	-	6271547	NA	0	155	10	155
P-0032097-T02-IM6	SOMATIC	DICER1	DLGAP5	14	14	55654342	95590827	Intron of DLGAP5(-):1Kb after exon 2	Exon 10 of DICER1(-)	GRCh37	DELETION	DICER1 (NM_030621) - DLGAP5 (NM_014750) rearrangement: c.1082:DICER1_c.238+1318:DLGAP5del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DICER1:DLGAP5}	39936485	NA	0	40	0	61
P-0033527-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981182	202003116	Exon 3 of ELF3(+)	IGR: 23Kb before ELF3(+)	GRCh37	DUPLICATION	ELF3 (NM_004433) rearrangement: c.261_chr1:g.202003116dup	PRECISE		MANUAL_OK	5to3	-	21934	NA	0	4	10	4
P-0033527-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123237240	123244400	Promoter of FGFR2(-):603bp from tx start	Intron of FGFR2(-):508bp after exon 16	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2195+509_c.*2131del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	7160	NA	0	26	10	27
P-0038513-T01-IM6	SOMATIC	RAB35	RAB35	12	12	120536685	120542911	Exon 5 of RAB35(-)	Intron of RAB35(-):1Kb before exon 3	GRCh37	DELETION	RAB35 (NM_006861) rearrangement: c.104-1158_c.407del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6226	NA	0	120	10	128
P-0038514-T01-IM6	SOMATIC	MON1A	MST1	3	3	49722907	49954426	Exon 12 of MST1(-)	Intron of MON1A(-):4Kb before exon 2	GRCh37	DELETION	MON1A (NM_032355) - MST1 (NM_020998) rearrangement: c.279-3634:MON1A_c.1420:MST1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MON1A:MST1}	231519	NA	0	3	10	15
P-0038514-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	34562568	38153323	IGR: 79Kb before LINC01288(+)	Exon 16 of WHSC1L1(-)	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.2906:WHSC1L1_chr8:g.34562568del	PRECISE		MANUAL_OK	3to5	-	3590755	NA	0	119	10	130
P-0006601-T03-IM6	SOMATIC	CDKN1B	FGD4	12	12	12870880	32787868	Exon 1 of CDKN1B(+)	Intron of FGD4(+):1Kb after exon 15	GRCh37	DELETION	CDKN1B (NM_004064) - FGD4 (NM_139241): c.107:CDKN1B_c.1902+1245:FGD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN1B:FGD4}	19916988	NA	0	3	6	3
P-0006601-T03-IM6	SOMATIC	FAM188B	BRAF	7	7	30830415	140490696	Intron of FAM188B(+):365bp before exon 5	Intron of BRAF(-):3Kb before exon 9	GRCh37	INVERSION	FAM188B (NM_032222) - BRAF(NM_004333) Fusion (FAM188B exon5 fused with BRAF exon9)  : c.664-366:FAM188B_c.1141-3312:BRAF	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FAM188B:BRAF}	109660281	NA	0	12	10	12
P-0012706-T02-IM6	SOMATIC	SDHC	SDHC	1	1	160844620	161293252	Promoter of ITLN1(-):2Kb from tx start	Intron of SDHC(+):151bp before exon 2	GRCh37	DELETION	SDHC (NM_003001) Rearrangement : c.*1834:ITLN1_c.21-152:SDHCdel	PRECISE		MANUAL_OK	3to5	-	448632	NA	0	21	10	22
P-0033490-T02-IM6	SOMATIC	CDH1	CDH1	16	16	68772218	68772870	Exon 2 of CDH1(+)	Intron of CDH1(+):556bp after exon 2	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement : c.67_c.163+556del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	652	NA	0	10	10	11
P-0034811-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151916746	152008811	Intron of KMT2C(-):861bp after exon 23	Intron of KMT2C(-):71bp after exon 5	GRCh37	DELETION	KMT2C (NM_170606) Rearrangement : c.739+72_c.3712+862del	PRECISE		MANUAL_OK	3to5	Deletion of 18 exons : in frame	92065	NA	0	43	10	44
P-0038426-T01-IM6	SOMATIC	HGF	HGF	7	7	81335608	85393601	Exon 15 of HGF(-)	IGR: 769Kb before SEMA3D(-)	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.1752:HGF_chr7:g.85393601inv	PRECISE		MANUAL_OK	5to5	-	4057993	NA	0	18	10	21
P-0038427-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37618996	55810160	Exon 1 of CDK12(+)	IGR: 12Kb before CCDC182(-)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.672:CDK12_chr17:g.55810160inv	PRECISE		MANUAL_OK	3to3	-	18191164	NA	0	5	10	5
P-0038428-T01-IM6	SOMATIC	SUFU	SUFU	10	10	102987961	104359167	Intron of LBX1(-):286bp after exon 1	Intron of SUFU(+):22bp before exon 8	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.911-23:SUFU_chr10:g.102987961del	PRECISE		MANUAL_OK	3to5	-	1371206	NA	0	3	6	3
P-0038428-T02-IM6	SOMATIC	MAP3K14	MAP3K14	17	17	43351041	43352465	Intron of MAP3K14(-):67bp before exon 9	Intron of MAP3K14(-):505bp before exon 7	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.1288-505_c.1550-67inv	PRECISE		MANUAL_OK	3to3	-	1424	NA	0	7	10	11
P-0038436-T01-IM6	SOMATIC	RAD51	RAD51	15	1	41021062	220264928	Intron of RAD51(+):40bp after exon 7	5-UTR of RNU5F-1(+):28Kb before coding start	GRCh37	TRANSLOCATION	RAD51 (NM_002875) rearrangement: t(1,15)(q41;q15.1)(chr1:g.220264928::chr15:g.41021062)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	50	10	50
P-0038436-T01-IM6	SOMATIC	EGFR	EGFR	7	7	38139660	55260266	IGR: 78Kb before STARD3NL(+)	Intron of EGFR(+):192bp before exon 22	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2626-193:EGFR_chr7:g.38139660inv	PRECISE		MANUAL_OK	5to5	-	17120606	NA	0	28	10	28
P-0038483-T01-IM6	SOMATIC	MSH2	MSH6	2	2	47638674	48033406	Intron of MSH2(+):878bp before exon 4	Exon 8 of MSH6(+)	GRCh37	DELETION	MSH2 (NM_000251) - MSH6 (NM_000179) rearrangement: c.646-879:MSH2_c.3710:MSH6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MSH2:MSH6}	394732	NA	0	46	10	46
P-0038483-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212288972	213381981	Exon 23 of ERBB4(-)	Intron of ERBB4(-):21Kb after exon 1	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.82+21192_.2774del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1093009	NA	0	45	10	46
P-0038584-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831874	42867855	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon2 fused with ERG exon2 ):c.127-1350:TMPRSS2_c.40-14330:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035981	NA	0	50	10	50
P-0038588-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141551343	141558960	Exon 15 of AGO2(-)	Intron of AGO2(-):252bp after exon 12	GRCh37	DELETION	AGO2 (NM_012154) Rearrangement : c.1588+253_c.1954del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7617	NA	0	44	10	44
P-0038589-T01-IM6	SOMATIC	TAP2	TAP2	6	6	32801727	32803114	Intron of TAP2(-):1Kb before exon 6	Exon 5 of TAP2(-)	GRCh37	DUPLICATION	TAP2 (NM_018833) Rearrangement : c.762_c.946-1126dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1387	NA	0	16	10	17
P-0038591-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487747	57493290	Intron of NAB2(+):366bp after exon 6	Intron of STAT6(-):67bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) Fusion (NAB2 exon6 fused with STAT6 exon16) : c.1468+366:NAB2_c.1745-67:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5543	NA	0	53	10	53
P-0038658-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72810206	72827544	IGR: 7Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement : chr16:g.72810206_c.9037del	PRECISE		MANUAL_OK	3to5	-	17338	NA	0	5	5	5
P-0038658-T01-IM6	SOMATIC	SMAD2	SMAD2	20	18	25540026	45377627	5-UTR of NINL(-):106Kb before coding start	Intron of SMAD2(-):17bp after exon 7	GRCh37	TRANSLOCATION	SMAD2 (NM_001003652) Rearrangement : t(18,20)(q21.1; p11.1) (chr12:g.56481635::chr7:g.83729009)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	15	10	15
P-0038670-T01-IM6	SOMATIC	CHEK1	CHEK1	11	11	38527702	125496730	IGR: 112Kb before LOC103312105(-)	Intron of CHEK1(+):2bp after exon 2	GRCh37	INVERSION	CHEK1 (NM_001274) Rearrangement : c.65+2:CHEK1_chr11:g.38527702inv	PRECISE		MANUAL_OK	3to3	-	86969028	NA	0	22	10	22
P-0038670-T01-IM6	SOMATIC	ATM	ATM	11	11	42113762	108139328	IGR: 96Kb before LOC100507205(-)	Exon 18 of ATM(+)	GRCh37	INVERSION	ATM (NM_000051) Rearrangement : c.2830:ATM_chr11:g.42113762inv	PRECISE		MANUAL_OK	3to3	-	66025566	NA	0	82	10	80
P-0038673-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591217	67594718	Intron of PIK3R1(+):30bp before exon 14	3-UTR of PIK3R1(+):72Kb after coding stop	GRCh37	DELETION	PIK3R1 (NM_181523) Rearrangement : c.1746-31_c.*1289del	PRECISE		MANUAL_OK	3to5	-	3501	NA	0	14	10	14
P-0038683-T01-IM6	SOMATIC	CSF2RA	EGFR	X	7	1401662	55224220	Exon 1 of CSF2RA(+)	Intron of EGFR(+):5bp before exon 9	GRCh37	TRANSLOCATION	CSF2RA (NM_001161530) - EGFR (NM_005228) rearrangement: t(7;X)(p11.2;p22.33)(chr7:g.55224220::chrX:g.1401662)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CSF2RA:EGFR}	0	NA	0	34	10	39
P-0003198-T04-IM6	SOMATIC	STAB1	PBRM1	3	3	52552955	52621495	Intron of STAB1(+):70bp after exon 48	Intron of PBRM1(-):44bp before exon 20	GRCh37	INVERSION	STAB1 (NM_015136) - PBRM1 (NM_018313)  rearrangement: c.5034+70:STAB1_c.2966-44:PBRM1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {STAB1:PBRM1}	68540	NA	0	17	10	17
P-0004593-T03-IM6	SOMATIC	FOXA1	FOXA1	14	14	38059884	38060949	3-UTR of FOXA1(-):685bp after coding stop	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.*686_c.1040del	PRECISE		MANUAL_OK	3to5	-	1065	NA	0	25	10	25
P-0006490-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	26939894	27088668	IGR: 59Kb before MIR1976(+)	Exon 7 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement : chr1:g.26939894_c.2277:ARID1Adel	PRECISE		MANUAL_OK	3to5	-	148774	NA	0	5	13	5
P-0006960-T01-IM5	SOMATIC	VTCN1	VTCN1	1	1	117694527	117695920	Intron of VTCN1(-): 1Kb after exon 4	Exon 4 of VTCN1(-)	GRCh37	DELETION	VTCN1 (NM_024626) rearrangement : c.517_724+1186del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1393	NA	0	26	46	26
P-0011454-T02-IM6	SOMATIC	MST1	MST1	3	3	49724163	49763320	Exon 7 of MST1(-)	3-UTR of IP6K1(-):1Kb after coding stop	GRCh37	INVERSION	MST1 (NM_020998) rearrangement: c.801:MST1_chr3:g.49763320inv	PRECISE		MANUAL_OK	5to5	-	39157	NA	0	12	10	28
P-0024793-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72953144	72993247	Intron of ZFHX3(-):29Kb before exon 4	Exon 2 of ZFHX3(-)	GRCh37	DUPLICATION	ZFHX3 (NM_006885) Rearrangement : c.798_c.3217-29283dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	40103	NA	0	12	10	13
P-0024793-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097361	178102657	Intron of NFE2L2(-):50bp before exon 4	Intron of NFE2L2(-):4Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) Rearrangement : c.46-3658_c.403-50del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5296	NA	0	7	0	7
P-0024793-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162661462	162864255	Intron of PARK2(-):22Kb after exon 3	Intron of PARK2(-):86bp after exon 2	GRCh37	DELETION	PARK2 (NM_004562) Rearrangement : c.171+87_c.412+22095del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	202793	NA	0	10	0	11
P-0031374-T02-IM6	SOMATIC	DNMT3A	ACVR2A	2	2	25470381	148675165	Intron of DNMT3A(-):78bp after exon 8	Intron of ACVR2A(+):170bp after exon 6	GRCh37	INVERSION	DNMT3A (NM_022552) - ACVR2A (NM_001616) rearrangement: c.1014+79:DNMT3A_c.816+170:ACVR2Ainv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {DNMT3A:ACVR2A}	123204784	NA	0	6	0	6
P-0034350-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900336	3903815	Exon 2 of CREBBP(-)	Intron of CREBBP(-):3Kb before exon 2	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.86-2805_c.760del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3479	NA	0	16	10	19
P-0036253-T01-IM6	SOMATIC	PAPSS2	PTEN	10	10	89483710	89692704	Intron of PAPSS2(+):3Kb before exon 8	Intron of PTEN(+):65bp before exon 5	GRCh37	DELETION	PAPSS2 (NM_001015880) - PTEN (NM_000314) rearrangement: c.880+2183:PAPSS2 _c.254-66:PTENdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PAPSS2:PTEN}	208994	NA	0	22	10	25
P-0036253-T01-IM6	SOMATIC	CUL1	EZH2	7	7	148481603	148511177	Intron of CUL1(+):434bp after exon 11	Exon 15 of EZH2(-)	GRCh37	INVERSION	CUL1 (NM_003592) - EZH2 (NM_004456) rearrangement: c.1298+434:CUL1_c.1725:EZH2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CUL1:EZH2}	29574	NA	0	85	10	83
P-0037994-T02-IM6	SOMATIC	RYBP	RYBP	8	3	90500353	72428448	IGR: 229Kb before LOC101929709(-)	Exon 2 of RYBP(-)	GRCh37	TRANSLOCATION	RYBP (NM_012234) rearrangement: t(3;8)(p13;q21.3)(chr3:g.72428448::chr8:g.90500353)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	33	10	34
P-0038443-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120479974	121485135	Exon 21 of NOTCH2(-)	IGR: 224Kb before EMBP1(+)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.3453:NOTCH2_chr1:g.121485135inv	PRECISE		MANUAL_OK	5to5	-	1005161	NA	0	36	10	70
P-0038444-T01-IM6	SOMATIC	PTEN	PTEN	10	3	89720655	109517319	Exon 8 of PTEN(+)	IGR: 388Kb before LINC01205(+)	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(3;10)(p13.13;q23.31)(chr3:g.109517319::chr10:g.89720655)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	27	10	44
P-0038500-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11084276	11098534	5-UTR of SMARCA4(+):11Kb before coding start	Exon 6 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1052:SMARCA4_chr19:g.11084276del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14258	NA	0	9	10	10
P-0038501-T01-IM6	SOMATIC	RUNX1	RUNX1	21	4	36164904	41311832	Exon 9 of RUNX1(-)	IGR: 50Kb before LIMCH1(+)	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(4;21)(p13;q22.12)(chr4:g.41311832::chr21:g.36164904)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	7
P-0038501-T01-IM6	SOMATIC	PIK3R1	PIK3R1	8	5	74337636	67591275	Intron of STAU2(-):3Kb before exon 14	Exon 14 of PIK3R1(+)	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;8)(q13.1;q21.11)(chr5:g.67591275::chr8:g.74337636)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0038529-T01-IM6	SOMATIC	PBRM1	BAP1	3	3	52439910	52665167	Exon 10 of BAP1(-)	Intron of PBRM1(-):2Kb before exon 13	GRCh37	DELETION	PBRM1 (NM_018313) - BAP1 (NM_004656) Rearrangement : c.1302-2116:PBRM1_c.802:BAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PBRM1:BAP1}	225257	NA	0	50	10	51
P-0038529-T01-IM6	SOMATIC	BAP1	IGF2BP2	3	3	52440276	185359806	Exon 9 of BAP1(-)	Promoter of IGF2BP2(-):2Kb from tx start	GRCh37	DUPLICATION	BAP1 (NM_004656) - IGF2BP2 (NM_006548): c.776:BAP1_ c.*3513:IGF2BP2	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BAP1:IGF2BP2}	132919530	NA	0	73	10	76
P-0038534-T01-IM6	SOMATIC	ATM	ATM	11	7	108196903	78322725	Exon 47 of ATM(+)	Intron of MAGI2(-):66Kb before exon 3	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(7;11)(q21.1;q22.3)(chr7:g.78322725::chr11:g.108196903)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	23	10	23
P-0038540-T01-IM6	SOMATIC	PTPRS	KDM4B	19	19	5108159	5215442	Intron of KDM4B(+):2Kb before exon 10	Intron of PTPRS(-):19bp before exon 28	GRCh37	INVERSION	PTPRS (NM_002850) - KDM4B (NM_015015) rearrangement: c.4195-19:PTPRS_c.919-2474:KDM4Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PTPRS:KDM4B}	107283	NA	0	4	10	4
P-0038541-T01-IM6	SOMATIC	AKT1	CEP128	14	14	81040246	105242111	Intron of CEP128(-):6Kb after exon 19	Exon 5 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) - CEP128 (NM_152446) rearrangement: c.313:AKT1_c.2856+6472:CEP128del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AKT1:CEP128}	24201865	NA	1	71	0	72
P-0038543-T01-IM6	SOMATIC	NF1	NF1	17	17	29508683	29527903	Intron of NF1(+):44bp before exon 7	Intron of NF1(+):151bp before exon 10	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.655-45_c.1063-152dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	19220	NA	0	9	0	15
P-0038718-T01-IM6	SOMATIC	ETV6	ETV6	12	12	3165810	12013489	IGR: 21Kb before TSPAN9(+)	Intron of ETV6(+):7Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: chr12:g.3165810_c.463+6994del	PRECISE		MANUAL_OK	3to5	-	8847679	NA	0	8	10	8
P-0038718-T01-IM6	SOMATIC	IL7R	IL7R	5	5	35876499	38200461	Exon 8 of IL7R(+)	IGR: 58Kb before EGFLAM(+)	GRCh37	DELETION	IL7R (NM_002185) rearrangement: c.1291_chr5:g.38200461del	PRECISE		MANUAL_OK	3to5	-	2323962	NA	0	6	10	7
P-0038722-T01-IM6	SOMATIC	FLT1	FLT1	13	11	28896791	49412395	Intron of FLT1(-):135bp after exon 21	IGR: 168Kb before LOC440040(+)	GRCh37	TRANSLOCATION	FLT1 (NM_002019) rearrangement: t(11;13)(p11.12;q12.2)(chr11:g.49412395::chr13:g.28896791)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	31
P-0038739-T01-IM6	SOMATIC	CYLD	CYLD	16	12	50820773	69472414	Exon 12 of CYLD(+)	IGR: 161Kb before CPSF6(+)	GRCh37	TRANSLOCATION	CYLD (NM_001042355) Rearrangement: t(12;16)(q15;q12.1)(chr12:g.69472414::chr16:g.50820773)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	44	10	43
P-0038739-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39918924	42868035	Intron of ERG(-):29Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1530:TMPRSS2_c.39+28662:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2949111	NA	0	104	10	112
P-0038740-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11027399	11045749	Exon 8 of CARM1(+)	IGR: 6Kb before C19orf52(+)	GRCh37	INVERSION	CARM1 (NM_199141) rearrangement: c.966:CARM1_chr19:g.11045749inv	PRECISE		MANUAL_OK	3to3	-	18350	NA	0	8	10	7
P-0038743-T01-IM6	SOMATIC	CPD	INPP4A	17	2	28742240	99203760	Intron of CPD(+):6Kb before exon 3	Intron of INPP4A(+):178bp before exon 26	GRCh37	TRANSLOCATION	CPD (NM_001304) - INPP4A (NM_001134224) fusion: t(2;17)(q11.2;q11.2)(chr2:g.99203760::chr17:g.28742240)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CPD:INPP4A}	0	NA	0	8	8	8
P-0038745-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40469155	40471109	Intron of STAT3(-):44bp after exon 22	Intron of STAT3(-):2Kb before exon 22	GRCh37	DUPLICATION	STAT3 (NM_139276) Rearrangement: c.2102-1867_c.2144+45dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1954	NA	0	11	0	11
P-0038749-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683358	32416589	Intron of EWSR1(+):235bp after exon 8	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion (EWSR1 exons 1-8 fused to WT1 exons 8-10): t(11;22)(p13;q12.2)(chr11:g.32416589::chr22:g.29683358)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	12	10	12
P-0038754-T01-IM6	SOMATIC	FLT1	FLT1	13	13	29027515	29041639	Intron of FLT1(-):14Kb after exon 3	Intron of FLT1(-):18bp after exon 2	GRCh37	DELETION	FLT1 (NM_002019) Rearrangement: c.161+19_c.388+13525del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	14124	NA	0	4	7	6
P-0038760-T01-IM6	SOMATIC	CCNE1	CCNE1	19	17	30303878	60028049	Exon 4 of CCNE1(+)	Intron of MED13(-):136bp after exon 28	GRCh37	TRANSLOCATION	CCNE1 (NM_001238) Rearrangement: t(17;19)(q23.2;q12)(chr17:g.60028049::chr19:g.30303878	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	14	10	14
P-0038772-T01-IM6	SOMATIC	EML4	ALK	2	2	29446687	42553539	Intron of ALK(-):293bp before exon 20	Intron of EML4(+):147bp after exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2341+147:EML4_c.3173-293:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13106852	NA	0	78	10	76
P-0038772-T01-IM6	SOMATIC	FNDC3B	CDKN2A	9	3	21971075	171854277	Exon 2 of CDKN2A(-)	Intron of FNDC3B(+):3Kb after exon 3	GRCh37	TRANSLOCATION	FNDC3B (NM_022763) - CDKN2A (NM_058195, NM_000077) rearrangement: t(3;9)(q26.31;p21.3)(chr3:g.171854277::chr9:g.21971075)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FNDC3B:CDKN2A}	0	NA	0	11	10	17
P-0038773-T01-IM6	SOMATIC	NF1	NF1	22	1	30078654	201159807	Intron of NF2(+):1Kb after exon 15	Promoter of IGFN1(+):145bp from tx start	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(1;22)(q32.1;q12.2)(chr1:g.201159807::chr22:g.30078654)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	43	10	44
P-0038774-T01-IM6	SOMATIC	FLCN	FLCN	17	17	17127466	17661541	Intron of FLCN(-):9bp before exon 6	5-UTR of RAI1(+):35Kb before coding start	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.397-9:FLCN_chr17:g.17661541del	PRECISE		MANUAL_OK	3to5	-	534075	NA	0	19	10	19
P-0038779-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11010106	11031913	Intron of CARM1(+):6Kb before exon 2	Intron of CARM1(+):110bp after exon 14	GRCh37	INVERSION	CARM1 (NM_199141) rearrangement: c.221-5521_c.1615+110inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	21807	NA	0	147	10	145
P-0038779-T01-IM6	SOMATIC	CERKL	CUL3	2	2	182445263	225346869	Intron of CERKL(-):14Kb before exon 3	Intron of CUL3(-):74bp before exon 14	GRCh37	DUPLICATION	CERKL (NM_201548) - CUL3 (NM_003590) rearrangement: c.482-6652:CERKL_c.1843-74:CUL3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CERKL:CUL3}	42901606	NA	0	21	0	21
P-0037528-T02-IM6	SOMATIC	SZT2	SZT2	1	1	43855809	43879333	Intron of SZT2(+):143bp after exon 1	Intron of SZT2(+):1Kb before exon 5	GRCh37	DUPLICATION	SZT2 (NM_015284) rearrangement: c.27+143_c.499-1420dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	23524	NA	0	6	8	9
P-0037990-T01-IM6	SOMATIC	PEMT	RNF43	17	17	17468885	56435228	Intron of PEMT(-):11Kb after exon 2	Exon 9 of RNF43(-)	GRCh37	DUPLICATION	PEMT (NM_148172) - RNF43 (NM_017763) rearrangement: c.204+11349:PEMT_c.1909:RNF43dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PEMT:RNF43}	38966343	NA	0	5	10	5
P-0037990-T01-IM6	SOMATIC	DNM2	SMARCA4	19	19	10925020	11145576	Intron of DNM2(+):2Kb after exon 14	Intron of SMARCA4(+):13bp before exon 29	GRCh37	DELETION	DNM2 (NM_001005361) - SMARCA4 (NM_003072) rearrangement: c.1671+1967:DNM2_c.3952-14:SMARCA4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNM2:SMARCA4}	220556	NA	0	16	10	19
P-0038133-T02-IM6	SOMATIC	NFKBIA	NFKBIA	14	12	35873769	66469859	Exon 1 of NFKBIA(-)	IGR: 47Kb before LLPH(-)	GRCh37	TRANSLOCATION	NFKBIA (NM_020529) rearrangement: t(12,14)(q14.3;q13.2)(chr12:g.66469859::chr14:g.35873769)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	39
P-0038557-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48486870	48581112	IGR: 8Kb before ELAC1(+)	Intron of SMAD4(+):38bp before exon 5	GRCh37	DELETION	SMAD4 (NM_005359) Rearrangement : chr18:g.48486870_c.455-39del	PRECISE		MANUAL_OK	3to5	-	94242	NA	0	8	9	9
P-0038568-T01-IM6	SOMATIC	NTRK1	SEMA4A	1	1	156127591	156841963	Intron of SEMA4A(+):269bp before exon 4	Intron of NTRK1(+):416bp after exon 7	GRCh37	DUPLICATION	NTRK1 (NM_002529) - SEMA4A (NM_001193300) rearrangement: c.850+416:NTRK1_c.301-270:SEMA4Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NTRK1:SEMA4A}	714372	NA	0	18	10	18
P-0038625-T01-IM6	SOMATIC	TEK	TEK	9	9	27184640	27185578	Intron of TEK(+):842bp before exon 9	Exon 9 of TEK(+)	GRCh37	INVERSION	TEK (NM_000459) rearrangement: c.1183-843_c.1278inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	938	NA	0	83	10	83
P-0038631-T01-IM6	SOMATIC	ERCC2	PPP1R13L	19	19	45855500	45899815	Exon 22 of ERCC2(-)	Exon 4 of PPP1R13L(-)	GRCh37	DUPLICATION	ERCC2 (NM_000400) - PPP1R13L (NM_006663) rearrangement: c.2157:ERCC2_c.700:PPP1R13Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERCC2:PPP1R13L}	44315	NA	0	34	10	34
P-0038643-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873786	42875444	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4433:TMPRSS2_c.40-56242:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3001658	NA	0	50	10	55
P-0015121-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	18174576	42877903	IGR: 212Kb before MIR125B2(+)	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.55+1974:TMPRSS2_chr21:g.18174576inv	PRECISE		MANUAL_OK	3to3	-	24703327	NA	0	124	10	122
P-0023614-T02-IM6	SOMATIC	BRAF	BRAF	7	7	97412920	140485826	IGR: 52Kb before TAC1(+)	Intron of BRAF(-):2Kb after exon 9	GRCh37	INVERSION	BRAF (NM_004333) Rearrangement : chr7:g.97412920_c.1177+1522:BRAFinv	PRECISE		MANUAL_OK	3to3	-	43072906	NA	0	2	10	7
P-0037865-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10292669	43650244	Intron of DNMT1(-):47bp after exon 2	IGR: 22Kb before PSG5(-)	GRCh37	INVERSION	DNMT1 (NM_001379) Rearrangement : c.117+48:DNMT1_chr19:g.43650244inv	IMPPRECISE		MANUAL_OK	5to5	-	33357575	NA	0	8	0	12
P-0038792-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15256497	15272297	IGR: 14Kb before NOTCH3(-)	Exon 33 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: chr19:g.15256497_c.6142del	PRECISE		MANUAL_OK	3to5	-	15800	NA	2	265	10	280
P-0038798-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53240702	53367131	Exon 10 of KDM5C(-)	IGR: 34Kb before SMC1A(-)	GRCh37	DUPLICATION	KDM5C (NM_004187) rearrangement: c.1378_chrX:g.53367131dup	PRECISE		MANUAL_OK	5to3	-	126429	NA	0	66	10	84
P-0038801-T01-IM6	SOMATIC	TFG	MET	7	3	116413541	100452598	Intron of MET(+):1Kb before exon 15	Intron of TFG(+):1Kb after exon 5	GRCh37	TRANSLOCATION	TFG (NM_001195478) - MET (NM_000245) fusion (TFG exons 1-5 fused to MET exons 15-21): t(3;7)(q12.2;q31.2)(chr3:g.100452598::chr7:g.:116413541)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TFG:MET}	0	NA	0	44	10	45
P-0038806-T01-IM6	SOMATIC	CUX2	ETV6	12	12	12008261	111518506	Intron of ETV6(+):2Kb after exon 4	Intron of CUX2(+):46Kb after exon 1	GRCh37	DUPLICATION	CUX2 (NM_015267) - ETV6 (NM_001987) Rearrangement:.c.63+46462:CUX2_c.463+1766:ETV6	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CUX2:ETV6}	99510245	NA	0	2	3	0
P-0038808-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39845127	42876795	Intron of ERG(-):25Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon2) :c.55+3082:TMPRSS2_c.18+25160:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3031668	NA	0	115	10	126
P-0038882-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21940629	21970920	IGR: 27Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.438:CDKN2Ap16INK4A_chr9:g.21940629	PRECISE		MANUAL_OK	3to5	-	30291	NA	0	55	10	60
P-0018583-T03-IM6	SOMATIC	SMAD4	SMAD4	18	18	48604770	48624100	Exon 12 of SMAD4(+)	IGR: 68Kb before SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1592:SMAD4_chr18:g.48624100del	PRECISE		MANUAL_OK	3to5	-	19330	NA	0	118	10	128
P-0035247-T02-IM6	SOMATIC	NCOR1	NCOR1	17	17	16039436	16041366	Intron of NCOR1(-):1Kb after exon 14	Intron of NCOR1(-):105bp after exon 13	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.1407+106_c.1509+1189inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1930	NA	0	65	10	72
P-0037866-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887035	42872240	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2124:TMPRSS2_c.39+60551:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2985205	NA	0	78	10	84
P-0038570-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683885	128664954	Intron of EWSR1(+):709bp before exon 9	Intron of FLI1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) -FLI1 (NM_002017) fusion (EWSR1 exons 1-8 fused with FLI1 exons 6-9 ) : t(11;22)(q24.3;q12.2)(chr11:g.128664954::chr22:g.29683885)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	165	10	177
P-0038901-T01-IM6	SOMATIC	ETV6	ETV6	12	12	8297469	12035047	IGR: 11Kb before POU5F1P3(-)	Intron of ETV6(+):2Kb before exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-2332:ETV6_chr12:g.8297469del	PRECISE		MANUAL_OK	3to5	-	3737578	NA	0	38	10	39
P-0038901-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113987160	184698547	Intron of PAX8(-):2Kb before exon 10	IGR: 709Kb before NUP35(+)	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1088-2327:PAX8_chr2:g.184698547del	PRECISE		MANUAL_OK	3to5	-	70711387	NA	0	38	10	38
P-0038970-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900136	48497783	Intron of CREBBP(-):161bp after exon 2	IGR: 75Kb before N4BP1(-)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.798+162:CREBBP_chr16:g.48497783inv	PRECISE		MANUAL_OK	5to5	-	44597647	NA	0	3	10	6
P-0038970-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37650587	37667623	Intron of CDK12(+):189bp before exon 5	Intron of CDK12(+):158bp before exon 8	GRCh37	DUPLICATION	CDK12 (NM_016507) rearrangement: c.2249-190_c.2667-159dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	17036	NA	0	5	10	5
P-0038981-T01-IM6	SOMATIC	PIK3R1	PIK3R1	20	5	31923943	67588853	IGR: 23Kb before CDK5RAP1(-)	Intron of PIK3R1(+):75bp before exon 9	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;20)(q13.1;q11.21)(chr5:g.67588853::chr20:g.31923943)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0038981-T01-IM6	SOMATIC	EPHB1	EPHB1	3	3	134880701	134894863	Intron of EPHB1(+):158bp before exon 7	Intron of EPHB1(+):4Kb before exon 10	GRCh37	INVERSION	EPHB1 (NM_004441) rearrangement: c.1423-159_c.1760-3839inv	PRECISE		MANUAL_OK	5to5	-	14162	NA	0	5	10	5
P-0038981-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591140	67593750	Exon 13 of PIK3R1(+)	3-UTR of PIK3R1(+):71Kb after coding stop	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1733:PIK3R1_chr5:g.67593750del	PRECISE		MANUAL_OK	3to5	-	2610	NA	0	9	10	9
P-0038990-T01-IM6	SOMATIC	CDH3	CDH1	16	16	68703528	68835524	Intron of CDH3(+):7Kb before exon 3	Intron of CDH1(+):48bp before exon 3	GRCh37	DELETION	CDH3 (NM_001793) - CDH1 (NM_004360) rearrangement: c.161-6760:CDH3_c.164-49:CDH1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CDH3:CDH1}	131996	NA	0	5	0	5
P-0038990-T01-IM6	SOMATIC	CDK12	FBXL20	17	17	37480976	37676367	Intron of FBXL20(-):18Kb after exon 2	Intron of CDK12(+):27bp after exon 11	GRCh37	INVERSION	CDK12 (NM_016507) - FBXL20 (NM_032875) rearrangement: c.3095+27:CDK12_c.104+18457:FBXL20inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CDK12:FBXL20}	195391	NA	0	16	10	16
P-0038995-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5090475	5091791	Exon 21 of JAK2(+)	Intron of JAK2(+):880bp after exon 22	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.2791_c.3059+880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1316	NA	0	4	6	4
P-0039070-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32937647	32943565	Exon 18 of BRCA2(+)	Intron of BRCA2(+):973bp before exon 19	GRCh37	DELETION	BRCA2 (NM_000059) Rearrangement: c.8308_c.8332-974del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5918	NA	0	38	10	40
P-0039123-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974785	21976716	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):6Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.42:CDKN2A_chr9:g.21976716del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1931	NA	0	2	6	2
P-0038811-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2116747	2129569	Intron of TSC2(+):1Kb after exon 16	Exon 29 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) Rearrangement : c.1716+1111_c.3296del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12822	NA	0	6	9	6
P-0038818-T01-IM6	SOMATIC	KIAA1549	STK11	19	7	1221181	138539377	Intron of STK11(+):30bp before exon 6	Intron of KIAA1549(-):2Kb before exon 17	GRCh37	TRANSLOCATION	KIAA1549 (NM_001164665) - STK11 (NM_000455) Rearrangement : t(7,19)(q34; p13.3) (chr7:g.138539377::chr19:g.1221181)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KIAA1549:STK11}	0	NA	0	65	10	80
P-0038819-T01-IM6	SOMATIC	NTRK1	RAB25	1	1	156032830	156844458	Intron of RAB25(+):2Kb after exon 1	Intron of NTRK1(+):40bp after exon 10	GRCh37	DUPLICATION	NTRK1 (NM_002529) - RAB25 (NM_020387) Rearrangement :	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NTRK1:RAB25}	811628	NA	0	88	10	94
P-0038819-T01-IM6	SOMATIC	TP53	TP53	17	17	7578110	7582525	Intron of TP53(-):66bp after exon 6	5-UTR of TP53(-):10Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) Rearrangement : c.-28-2585_c.672+67dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript	4415	NA	0	8	0	8
P-0038823-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55188142	55223439	Intron of EGFR(+):22Kb before exon 2	Intron of EGFR(+):83bp before exon 8	GRCh37	DELETION	EGFR (NM_005228)  vIII intragenic deletion : c.89-21837_c.890-84del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	35297	NA	0	298	0	1597
P-0038824-T01-IM6	SOMATIC	DDR2	DDR2	1	1	162741436	162742143	Intron of DDR2(+):377bp before exon 13	Intron of DDR2(+):106bp after exon 13	GRCh37	DUPLICATION	DDR2 (NM_006182) Rearrangement :  c.1505-378_c.1728+106dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	707	NA	0	30	10	31
P-0038848-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246079004	246105277	Intron of SMYD3(-):62bp before exon 8	Intron of SMYD3(-):12Kb before exon 6	GRCh37	DELETION	SMYD3 (NM_001167740) Rearrangement : c.532-12038_c.703-62del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	26273	NA	0	13	0	15
P-0038850-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27087189	27089317	Intron of ARID1A(+):157bp before exon 5	Intron of ARID1A(+):146bp before exon 8	GRCh37	DELETION	ARID1A (NM_006015) Rearrangement : c.1921-158_c.2420-147del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2128	NA	0	38	10	44
P-0038860-T01-IM6	SOMATIC	NF1	NF1	17	17	29482140	29483123	Intron of NF1(+):860bp before exon 2	Exon 2 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement : c.61-861_c.183del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	983	NA	0	18	0	18
P-0038907-T01-IM6	SOMATIC	NOTCH3	PRKCZ	19	1	15290892	2026923	Exon 20 of NOTCH3(-)	Intron of PRKCZ(+):36Kb after exon 4	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) - PRKCZ (NM_002744) rearrangement: t(1;19)(p36.33;p13.12)(chr1:g.2026923::chr19:g.15290892)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH3:PRKCZ}	0	NA	0	23	10	35
P-0038907-T01-IM6	SOMATIC	MPL	MPL	9	1	128023496	43814976	Promoter of GAPVD1(+):576bp from tx start	Exon 10 of MPL(+)	GRCh37	TRANSLOCATION	MPL (NM_005373) rearrangement: t(1;9)(p34.2;q33.3)(chr1:g.43814976::chr9:g.128023496)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MPL:GAPVD1}	0	NA	0	12	10	15
P-0038909-T01-IM6	SOMATIC	CEBPA	ZNF585A	19	19	33793248	37642907	Exon 1 of CEBPA(-)	Exon 6 of ZNF585A(-)	GRCh37	DUPLICATION	CEBPA (NM_004364) - ZNF585A (NM_152655) rearrangement: c.73:CEBPA_c.1729:ZNF585Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CEBPA:ZNF585A}	3849659	NA	0	12	10	47
P-0038909-T01-IM6	SOMATIC	XRCC2	XRCC2	X	7	33346860	152357896	Intron of DMD(-):11Kb after exon 1	Intron of XRCC2(-):29bp before exon 2	GRCh37	TRANSLOCATION	XRCC2 (NM_005431) rearrangement: t(7;X)(q36.1;p21.1)(chr7:g.152357896::chrX:g.33346860)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	31	0	31
P-0038937-T01-IM6	SOMATIC	FBXL20	ERBB2	17	17	37479575	37879824	Intron of FBXL20(-):20Kb before exon 3	Exon 18 of ERBB2(+)	GRCh37	INVERSION	FBXL20 (NM_032875) - ERBB2 (NM_004448) fusion: c.105-18648:FBXL20_c.1223-24:ERBB2inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERBB2:FBXL20}	400249	NA	0	20	0	22
P-0038937-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	40352713	41267368	Intron of EIF1B(+):166bp after exon 2	Intron of CTNNB1(+):16bp after exon 6	GRCh37	INVERSION	CTNNB1 (NM_001904) rearrangement: c.936+16:CTNNB1_chr3:g.40352713inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	914655	NA	0	18	10	17
P-0038937-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33289458	41395990	Intron of DAXX(-):37bp after exon 2	IGR: 74Kb before LINC01276(+)	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.243+38:DAXX_chr6:g.41395990inv	IMPPRECISE		MANUAL_OK	5to5	-	8106532	NA	0	47	0	51
P-0038940-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	14	72831501	84173799	Exon 9 of ZFHX3(-)	IGR: 2Mb before LINC00911(+)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(14;16)(q31.2;q22.2)(chr14:g.84173799::chr16:g.72831501)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	57	10	63
P-0038940-T01-IM6	SOMATIC	TEK	TEK	9	8	27202916	72419718	Exon 13 of TEK(+)	IGR: 310Kb before EYA1(-)	GRCh37	TRANSLOCATION	TEK (NM_000459) rearrangement: t(8;9)(q13.3;p21.2)(chr8:g.72419718::chr9:g.27202916)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	69	10	68
P-0010035-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89685667	89693310	Intron of PTEN(+):353bp after exon 3	Intron of PTEN(+):302bp after exon 5	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.209+353_c.492+302dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	7643	NA	0	6	9	6
P-0010035-T02-IM6	SOMATIC	KDR	KDR	4	4	55950150	55955293	Intron of KDR(-):1Kb before exon 28	Intron of KDR(-):153bp before exon 26	GRCh37	DUPLICATION	KDR (NM_002253) rearrangement: c.3405-153_c.3663-1348dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	5143	NA	0	7	10	6
P-0013114-T04-IM6	SOMATIC	VTCN1	VTCN1	6	1	169564182	117753437	IGR: 11Kb before LOC101929504(-)	Intron of VTCN1(-):8bp after exon 1	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;6)(p13.1;q27)(chr1:g.117753437::chr6:g.169564182)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0039001-T01-IM6	SOMATIC	DLG1	PIK3CA	3	3	178916846	196818936	Exon 2 of PIK3CA(+)	Intron of DLG1(-):1Kb before exon 11	GRCh37	INVERSION	DLG1 (NM_004087) - PIK3CA (NM_006218) rearrangement: c.1646-1039:DLG1_c.233:PIK3CAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DLG1:PIK3CA}	17902090	NA	0	99	10	121
P-0039003-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89711879	115299593	Exon 6 of PTEN(+)	IGR: 11Kb before HABP2(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.497:PTEN_chr10:g.115299593inv	PRECISE		MANUAL_OK	5to5	-	25587714	NA	0	46	10	59
P-0039021-T01-IM6	SOMATIC	PRKCE	ALK	2	2	29447206	45922846	Intron of ALK(-):812bp before exon 20	Intron of PRKCE(+):43Kb after exon 1	GRCh37	INVERSION	PRKCE (NM_005400) - ALK (NM_004304) fusion: c.348+43259:PRKCE_c.3173-812:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PRKCE:ALK}	16475640	NA	0	39	10	36
P-0039027-T01-IM6	SOMATIC	GSK3B	GSK3B	3	3	119613357	119634825	Intron of GSK3B(-):11Kb after exon 7	Intron of GSK3B(-):65bp after exon 5	GRCh37	DELETION	GSK3B (NM_002093) rearrangement: c.608+66_c.813+11245del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	21468	NA	0	6	0	6
P-0039058-T01-IM6	SOMATIC	SKIL	PRKCI	3	3	170013696	170094627	Intron of PRKCI(+):2bp before exon 15	Intron of SKIL(+):4Kb before exon 4	GRCh37	DUPLICATION	SKIL (NM_001248008) - PRKCI (NM_002740) rearrangement: c.1099-4405:SKIL_c.1418-3:PRKCIdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SKIL:PRKCI}	80931	NA	0	30	10	32
P-0039063-T01-IM6	SOMATIC	TP53	TP53	17	17	7577129	7579498	Exon 8 of TP53(-)	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.189_c.809del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2369	NA	0	56	10	60
P-0039063-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10595435	10602332	Promoter of KEAP1(-):1Kb from tx start	Exon 3 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1246:KEAP1_chr19:g.10595435del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6897	NA	0	15	10	26
P-0039064-T01-IM6	SOMATIC	MFSD11	NOTCH2	17	1	74746935	120497842	Intron of MFSD11(+):3Kb before exon 9	Exon 13 of NOTCH2(-)	GRCh37	TRANSLOCATION	MFSD11 (NM_001242532) - NOTCH2 (NM_024408) rearrangement: t(1;17)(p12;q25.1)(chr1:g.120497842::chr17:g.74746935)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MFSD11:NOTCH2}	0	NA	0	36	10	39
P-0039064-T01-IM6	SOMATIC	APC	APC	21	5	10829409	112151212	IGR: 77Kb before TPTE(-)	Exon 9 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;21)(q22.2;p11.2)(chr5:g.112151212::chr21:g.10829409)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	19
P-0016627-T02-IM6	SOMATIC	GLI1	GLI1	12	1	57857810	188655289	Exon 3 of GLI1(+)	IGR: 1Mb before BRINP3(-)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(1;12)(q31.1;q13.3)(chr1:g.188655289::chr12:g.57857810)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	174	10	174
P-0038857-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	6630097	39638028	IGR: 119Kb before LINC01387(+)	Intron of PIK3C3(+):13bp after exon 22	GRCh37	INVERSION	PIK3C3 (NM_002647) Rearrangement : chr18:g.6630097_c.2432+13:PIK3C3inv	PRECISE		MANUAL_OK	3to3	-	33007931	NA	0	57	10	57
P-0038951-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14224096	14627865	Intron of PRKACA(-):849bp after exon 1	Intron of DNAJB1(-):7bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-7:DNAJB1_c.46+4218:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	403769	NA	0	39	10	41
P-0039045-T01-IM6	SOMATIC	KDM5A	STAT5A	17	12	40459887	470840	Intron of STAT5A(+):146bp after exon 16	Intron of KDM5A(-):1Kb after exon 5	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) - STAT5A (NM_003152) rearrangement: t(12;17)(p13.33;q21.2)(chr12:g.470840::chr17:g.40459887)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KDM5A:STAT5A}	0	NA	0	6	6	6
P-0039047-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862212	42874349	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4233:TMPRSS2_c.18+8075:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3012137	NA	0	47	10	47
P-0039075-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	10	24134153	119852453	Intron of SMARCB1(+):72bp after exon 2	5-UTR of CASC2(+):117Kb before coding start	GRCh37	TRANSLOCATION	SMARCB1 (NM_003073) rearrangement: t(10;22)(q26.11;q11.23)(chr10:g.119852453::chr22:g.24134153)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	6	6	6
P-0039180-T01-IM6	SOMATIC	OSBP2	EWSR1	22	22	29686233	31175712	Intron of EWSR1(+):1Kb before exon 10	Intron of OSBP2(+):38Kb after exon 2	GRCh37	DUPLICATION	OSBP2 (NM_030758) - EWSR1 (NM_013986) rearrangement: c.853+38356:OSBP2_c.993-1321:EWSR1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {OSBP2:EWSR1}	1489479	NA	0	98	10	106
P-0037588-T02-IM6	SOMATIC	SMARCB1	SMARCB1	22	22	23406255	24135657	Exon 5 of RSPH14(-)	Intron of SMARCB1(+):88bp before exon 3	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.233-89:SMARCB1_chr22:g.23406255del	PRECISE		MANUAL_OK	3to5	-	729402	NA	0	7	10	8
P-0039087-T01-IM6	SOMATIC	FGFR2	BICC1	10	10	60563135	123242059	Intron of BICC1(+):133bp after exon 15	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused with BICC1 exons 16-21) : c.2301+1153:FGFR2_c.2181+133:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62678924	NA	0	25	10	27
P-0039094-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3893968	3900661	Intron of CREBBP(-):6Kb after exon 2	Exon 2 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) Rearrangement: c.435_c.798+6330del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6693	NA	0	21	10	23
P-0039222-T01-IM6	SOMATIC	GNA11	GNA11	19	17	3119314	33059356	Exon 6 of GNA11(+)	IGR: 152Kb before TMEM132E(+)	GRCh37	TRANSLOCATION	GNA11 (NM_002067) rearrangement: t(17;19)(q12;p13.3)(chr17:g.33059356::chr19:g.3119314)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	43	10	47
P-0039223-T01-IM6	SOMATIC	TRAF7	TRAF7	20	16	40221310	2221580	5-UTR of CHD6(-):188Kb before coding start	Exon 7 of TRAF7(+)	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(16;20)(p13.3;q12)(chr16:g.2221580::chr20:g.40221310)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRAF7:CHD6}	0	NA	0	14	10	14
P-0039225-T01-IM6	SOMATIC	MARK2	RPS6KA4	11	11	63637833	64128888	Intron of MARK2(+):25Kb before exon 2	Intron of RPS6KA4(+):52bp before exon 6	GRCh37	DELETION	MARK2 (NM_001039469) - RPS6KA4 (NM_003942) rearrangement: c.55-24798:MARK2_c.571-53:RPS6KA4del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MARK2:RPS6KA4}	491055	NA	0	11	0	11
P-0039225-T01-IM6	SOMATIC	TTYH2	RPS6KA4	17	11	72227047	64128889	Exon 3 of TTYH2(+)	Intron of RPS6KA4(+):51bp before exon 6	GRCh37	TRANSLOCATION	TTYH2 (NM_032646) - RPS6KA4 (NM_003942) rearrangement: t(11;17)(q13.1;q25.1)(chr11:g.64128889::chr17:g.72227047)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TTYH2:RPS6KA4}	0	NA	0	76	10	79
P-0039225-T01-IM6	SOMATIC	PEMT	TP53	17	17	7577510	17485984	Exon 7 of TP53(-)	Intron of PEMT(-):6Kb before exon 2	GRCh37	DELETION	PEMT (NM_148172) - TP53 (NM_000546) rearrangement: c.97-5643:PEMT_c.771:TP53del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PEMT:TP53}	9908474	NA	0	21	10	22
P-0039226-T01-IM6	SOMATIC	ERRFI1	ERRFI1	3	1	179298806	8074113	Intron of ACTL6A(+):10bp after exon 10	Exon 4 of ERRFI1(-)	GRCh37	TRANSLOCATION	ERRFI1 (NM_018948) rearrangement: t(1;3)(p36.23;q26.33)(chr1:g.8074113::chr3:g.179298806)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0039226-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135784269	135786290	Intron of TSC1(-):2Kb before exon 13	Intron of TSC1(-):98bp after exon 11	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.1141+99_c.1264-1512del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2021	NA	0	35	10	35
P-0039241-T01-IM6	SOMATIC	C16orf45	TSC2	16	16	2121506	15531526	Intron of TSC2(+):4bp before exon 18	Intron of C16orf45(+):3Kb after exon 1	GRCh37	DUPLICATION	C16orf45 (NM_033201) - TSC2 (NM_000548) rearrangement: c.106+2910:C16orf45_c.1840-5:TSC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {C16orf45:TSC2}	13410020	NA	0	15	10	14
P-0039245-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29692577	29890022	Intron of EWSR1(+):219bp after exon 13	Promoter of NEFH(+):14Kb from tx start	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.1309+219:EWSR1_chr22:g.29890022dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {NEFH:EWSR1}	197445	NA	0	15	10	15
P-0039245-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	149510027	152640215	Intron of PDGFRB(-):74bp after exon 9	IGR: 230Kb before GRIA1(+)	GRCh37	INVERSION	PDGFRB (NM_002609) rearrangement: c.1367+75:PDGFRB_chr5:g.152640215inv	PRECISE		MANUAL_OK	5to5	-	3130188	NA	0	15	10	18
P-0039262-T01-IM6	SOMATIC	EGFR	VSTM2A	7	7	54620053	55241509	Intron of VSTM2A(+):2Kb after exon 4	Intron of EGFR(+):104bp before exon 18	GRCh37	DUPLICATION	EGFR (NM_005228) - VSTM2A (NM_182546) rearrangement: c.2062-105:EGFR_c.634+2190:VSTM2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EGFR:VSTM2A}	621456	NA	0	975	10	1832
P-0039266-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117643480	117885596	Intron of ROS1(-):923bp before exon 35	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-923:ROS1_chr6:g.117885596del	PRECISE		MANUAL_OK	3to5	-	242116	NA	0	13	10	13
P-0039297-T01-IM6	SOMATIC	PPM1D	PPM1D	17	17	58725136	58728989	Intron of PPM1D(+):116bp before exon 4	Intron of PPM1D(+):4Kb after exon 4	GRCh37	DUPLICATION	PPM1D (NM_003620) rearrangement: c.827-117_c.1017+3546dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	3853	NA	0	12	10	25
P-0039300-T01-IM6	SOMATIC	BTK	BTK	X	X	99466815	100608088	IGR: 80Kb before PCDH19(-)	Intron of BTK(-):93bp after exon 18	GRCh37	DELETION	BTK (NM_000061) rearrangement: c.1908+94:BTK_chrX:g.99466815del	PRECISE		MANUAL_OK	3to5	-	1141273	NA	0	28	10	37
P-0039306-T01-IM6	SOMATIC	POLE	POLE	12	12	76693286	133237771	IGR: 45Kb before BBS10(-)	Intron of POLE(-):21bp before exon 25	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.2865-21:POLE_chr12:g.76693286inv	IMPPRECISE		MANUAL_OK	3to3	-	56544485	NA	0	19	0	19
P-0039307-T01-IM6	SOMATIC	FOXK1	CARD11	7	7	2974347	4797672	Intron of CARD11(-):84bp before exon 10	Intron of FOXK1(+):854bp after exon 5	GRCh37	INVERSION	FOXK1 (NM_001037165) - CARD11 (NM_032415) rearrangement: c.1244+854:FOXK1_c.1342-84:CARD11inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {FOXK1:CARD11}	1823325	NA	0	28	10	28
P-0021561-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874362	42867576	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exon4) :  c.127-1071:TMPRSS2_c.40-56818:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2993214	NA	0	42	10	43
P-0021606-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49445830	74613314	Exon 10 of KMT2D(-)	3-UTR of LOC100507377(-):73Kb after coding stop	GRCh37	DELETION	KMT2D (NM_003482) Rearrangement : chr12:g.74613314_c.1636:KMT2Ddel	PRECISE		MANUAL_OK	3to5	-	25167484	NA	0	9	10	9
P-0039139-T01-IM6	SOMATIC	NAB2	KIF5A	12	12	57486074	57950002	Intron of NAB2(+):156bp before exon 3	Intron of KIF5A(+):6Kb after exon 1	GRCh37	DELETION	NAB2 (NM_005967) - KIF5A (NM_004984) rearrangement: c.958-157:NAB2_c.129+5819:KIF5Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {NAB2:KIF5A}	463928	NA	0	62	10	235
P-0001449-T03-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42871485	14003185	Intron of TMPRSS2(-): 1Kb before exon 2	Intron of ETV1(-): 14Kb after exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion (TMPRSS2 exon 1 fused in-frame to ETV1 exons 6-12): t(7;21)(p21.2;q22.3)(chr7:g.14003185::chr21:g.42871485)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (TMPRSS2-ETV1)	0	NA	0	102	0	127
P-0039112-T01-IM6	SOMATIC	RAF1	PPP4R2	3	3	12641931	73058596	Intron of RAF1(-):17bp before exon 8	Intron of PPP4R2(+):11Kb after exon 2	GRCh37	INVERSION	RAF1 (NM_002880) - PPP4R2 (NM_174907) rearrangement: c.835-17:RAF1_c.116+11287:PPP4R2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RAF1:PPP4R2}	60416665	NA	0	2	6	2
P-0039229-T01-IM6	SOMATIC	UPF1	UPF1	19	19	16454164	18976270	IGR: 12Kb before EPS15L1(-)	Intron of UPF1(+):11bp after exon 21	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.3019+11:UPF1_chr19:g.16454164inv	PRECISE		MANUAL_OK	3to3	-	2522106	NA	0	5	7	5
P-0039229-T01-IM6	SOMATIC	HIGD1A	CTNNB1	3	3	41266381	42831681	Intron of CTNNB1(+):63bp before exon 4	Intron of HIGD1A(-):4Kb after exon 2	GRCh37	INVERSION	HIGD1A (NM_001099668) - CTNNB1 (NM_001904) rearrangement: c.139+3968:HIGD1A_c.242-64:CTNNB1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {HIGD1A:CTNNB1}	1565300	NA	0	52	10	56
P-0039234-T01-IM6	SOMATIC	ADCY10	NUF2	1	1	163295867	167862886	Exon 2 of NUF2(+)	Intron of ADCY10(-):204bp after exon 5	GRCh37	INVERSION	ADCY10 (NM_018417) - NUF2 (NM_031423) rearrangement: c.828+205:ADCY10_c.26:NUF2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ADCY10:NUF2}	4567019	NA	0	32	10	47
P-0039234-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42869408	42872788	Intron of TMPRSS2(-):637bp after exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2672_c.126+638del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3380	NA	0	107	10	255
P-0039238-T01-IM6	SOMATIC	NF1	NF1	17	17	29585386	34951290	Exon 32 of NF1(+)	Intron of DHRS11(+):110bp before exon 2	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.4198:NF1_chr17:g.34951290inv	PRECISE		MANUAL_OK	5to5	-	5365904	NA	0	23	10	30
P-0039238-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864537	42866985	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):480bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-480:TMPRSS2_c.18+5750:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3002448	NA	0	6	0	6
P-0039291-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1957118	28355378	Intron of WHSC1(+):51bp after exon 13	IGR: 466Kb before MIR4275(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.2518+51:WHSC1_chr4:g.28355378del	PRECISE		MANUAL_OK	3to5	-	26398260	NA	0	13	10	13
P-0039295-T01-IM6	SOMATIC	INPPL1	INPPL1	11	3	71936263	90035582	Intron of INPPL1(+):53bp after exon 1	IGR: 879Kb before EPHA3(+)	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(3;11)(p11.1;q13.4)(chr3:g.90035582::chr11:g.71936263)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	40	10	39
P-0039320-T01-IM6	SOMATIC	ALK	ALK	2	2	22452824	29451914	IGR: 307Kb before LOC102723362(+)	Exon 16 of ALK(-)	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.2651:ALK_chr2:g.22452824dup	PRECISE		MANUAL_OK	5to3	-	6999090	NA	0	54	10	63
P-0039326-T01-IM6	SOMATIC	UPF1	UPF1	19	8	18974316	24400830	Exon 19 of UPF1(+)	3-UTR of LOC101929294(-):5Kb after coding stop	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(8;19)(p21.2;p13.11)(chr8:g.24400830::chr19:g.18974316)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	69	10	74
P-0001507-T01-IM3	SOMATIC	None	None	17	17	11964668	12011204	Intron of MAP2K4(+): 6Kb after exon 2	Exon 5 of MAP2K4(+)	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	46536	NA	0	6	26	7
P-0002273-T02-IM3	SOMATIC	TMPRSS2	TMPRSS2	21	21	39864526	42866981	Intron of ERG(-): 6Kb after exon 1	Intron of TMPRSS2(-): 476bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) and ERG (NM_182918) deletion (3002455bp):  TMPRSS2:c.127-476_ERG:c.18+5761del	IMPRECISE		AUTO_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002455	NA	0	9	0	9
P-0002508-T02-IM6	SOMATIC	NF2	NF2	22	22	30067837	30083316	Exon 11 of NF2(+)	Intron of NF2(+):6Kb after exon 15	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.1022_c.1737+5726del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15479	NA	0	9	10	9
P-0033283-T03-IM6	SOMATIC	MEN1	MEN1	18	11	4043058	64574579	5-UTR of DLGAP1(-):544Kb before coding start	Intron of MEN1(-):9bp before exon 6	GRCh37	TRANSLOCATION	MEN1 (NM_000244) rearrangement: t(11,18)(q13.1;p11.31)(chr11:g.64574579::chr18:g.4043058)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	49	10	48
P-0039109-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1725375	1808760	Intron of TACC3(+):65bp after exon 2	Intron of FGFR3(+):82bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-83:FGFR3_c.162+65:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	83385	NA	0	17	10	17
P-0039276-T01-IM6	SOMATIC	INPP4B	INPP4B	12	4	50117803	143326279	IGR: 17Kb before TMBIM6(+)	Intron of INPP4B(-):79bp after exon 6	GRCh37	TRANSLOCATION	INPP4B (NM_001101669) rearrangement: t(4;12)(q31.21;q13.12)(chr4:g.143326279::chr12:g.50117803)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	33	0	11
P-0039276-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32913443	51613562	Exon 11 of BRCA2(+)	3-UTR of GUCY1B2(-):27Kb after coding stop	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.4951:BRCA2_chr13:g.51613562inv	IMPPRECISE		MANUAL_OK	3to3	-	18700119	NA	0	13	0	14
P-0039282-T01-IM6	SOMATIC	APC	APC	5	5	111430124	112174664	IGR: 66Kb before EPB41L4A-AS1(+)	Exon 16 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: c.3373:APC_chr5:g.111430124dup	PRECISE		MANUAL_OK	5to3	-	744540	NA	0	49	10	50
P-0039365-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18195353	18641492	IGR: 38Kb before RERGL(-)	Exon 18 of PIK3C2G(+)	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.2491:PIK3C2G_chr12:g.18195353del	PRECISE		MANUAL_OK	3to5	-	446139	NA	0	47	10	50
P-0039370-T01-IM6	SOMATIC	RPAP3	FGFR2	12	10	48092574	123242832	Intron of RPAP3(-):1Kb before exon 4	Intron of FGFR2(-):379bp after exon 17	GRCh37	TRANSLOCATION	RPAP3 (NM_024604) - FGFR2 (NM_000141) rearrangement: t(10;12)(q26.13;q13.11)(chr10:g.123242832::chr12:g.48092574)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RPAP3:FGFR2}	0	NA	0	59	10	61
P-0039372-T01-IM6	SOMATIC	FLCN	PRDM16	17	1	17122273	3256296	Intron of FLCN(-):59bp after exon 9	Intron of PRDM16(+):45Kb before exon 4	GRCh37	TRANSLOCATION	FLCN (NM_144997) - PRDM16 (NM_022114) rearrangement: t(1;17)(p36.32;p11.2)(chr1:g.3256296::chr17:g.17122273)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FLCN:PRDM16}	0	NA	0	27	10	27
P-0039372-T01-IM6	SOMATIC	NOS1AP	FLCN	17	1	17122618	162239384	Intron of FLCN(-):95bp before exon 9	Intron of NOS1AP(+):18Kb before exon 3	GRCh37	TRANSLOCATION	NOS1AP (NM_014697) - FLCN (NM_144997) rearrangement: t(1;17)(q23.3;p11.2)(chr1:g.162239384::chr17:g.17122618)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NOS1AP:FLCN}	0	NA	0	41	10	41
P-0039372-T01-IM6	SOMATIC	INSR	INSR	19	8	7184535	118948902	Exon 3 of INSR(-)	Intron of EXT1(-):99Kb before exon 2	GRCh37	TRANSLOCATION	INSR (NM_000208) rearrangement: t(8;19)(q24.11;p13.2)(chr8:g.118948902::chr19:g.7184535)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	8	10	10
P-0039377-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	2	186505193	180104857	Intron of EIF4A2(+):90bp before exon 9	5-UTR of SESTD1(-):130Kb before coding start	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(2;3)(q31.2;q27.3)(chr2:g.180104857::chr3:g.186505193)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	20	10	19
P-0039413-T01-IM6	SOMATIC	NUP210L	PTCH1	9	1	98209832	153966858	Intron of PTCH1(-):99bp before exon 23	Intron of NUP210L(-):693bp after exon 36	GRCh37	TRANSLOCATION	NUP210L (NM_207308) - PTCH1 (NM_000264) rearrangement: t(1;9)(q21.3;q22.32)(chr1:g.153966858::chr9:g.98209832)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NUP210L:PTCH1}	0	NA	0	21	10	21
P-0039420-T01-IM6	SOMATIC	KMT2B	KMT2B	19	14	36210604	33173134	Intron of KMT2B(+):81bp before exon 3	Intron of AKAP6(+):8Kb after exon 9	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(14;19)(q12;q13.12)(chr14:g.33173134::chr19:g.36210604)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	60	10	62
P-0039420-T01-IM6	SOMATIC	KMT2B	STRN3	19	14	36216822	31390746	Intron of KMT2B(+):103bp after exon 13	Intron of STRN3(-):2Kb before exon 9	GRCh37	TRANSLOCATION	KMT2B (NM_014727) - STRN3 (NM_001083893) rearrangement: t(14;19)(q12;q13.12)(chr14:g.31390746::chr19:g.36216822)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {KMT2B:STRN3}	0	NA	0	52	10	50
P-0039421-T01-IM6	SOMATIC	DOT1L	ZNF77	19	19	2228308	2938248	Intron of DOT1L(+):1Kb after exon 27	Intron of ZNF77(-):1Kb after exon 2	GRCh37	INVERSION	DOT1L (NM_032482) - ZNF77 (NM_021217) rearrangement: c.4606+1182:DOT1L_c.130+1031:ZNF77inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {DOT1L:ZNF77}	709940	NA	0	34	10	34
P-0039422-T01-IM6	SOMATIC	RAD52	RAD52	12	1	1025575	201991943	Exon 9 of RAD52(-)	IGR: 12Kb before ELF3(+)	GRCh37	TRANSLOCATION	RAD52 (NM_134424) rearrangement: t(1;12)(q32.1;p13.33)(chr1:g.201991943::chr12:g.1025575)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	60	10	62
P-0039508-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39840410	42845230	Intron of ERG(-):23Kb before exon 2	Intron of TMPRSS2(-):21bp after exon 9	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.1010+22:TMPRSS2_c.19-22866:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004820	NA	0	30	10	33
P-0003167-T01-IM5	SOMATIC	STK11	STK11	19	19	1215776	1221166	Intron of STK11(+): 3Kb before exon 2	Intron of STK11(+): 46bp before exon 6	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: in frame	5390	NA	0	20	46	23
P-0003206-T01-IM5	SOMATIC	ALK	EML4	2	2	29448365	42492359	Exon 19 of ALK(-)	Intron of EML4(+): 488bp after exon 5	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (EML4-ALK)	13043994	NA	0	101	89	128
P-0003296-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57486830	57512355	Intron of NAB2(+): 16bp before exon 5	IGR: 7Kb after STAT6(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	25525	NA	0	102	105	172
P-0003350-T01-IM5	SOMATIC	EYS	PARK2	6	6	65899093	162683695	Intron of EYS(-): 107Kb after exon 12	Exon 3 of PARK2(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	96784602	NA	0	51	66	94
P-0003435-T01-IM5	SOMATIC	EWSR1	WT1	22	11	29684488	32416087	Intron of EWSR1(+): 107bp before exon 7	Intron of WT1(-): 2Kb after exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-WT1)	0	NA	0	30	55	29
P-0003456-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55094673	55221894	Intron of EGFR(+): 8Kb after exon 1	Intron of EGFR(+): 49bp after exon 7	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	127221	NA	0	10	20	12
P-0003507-T01-IM5	SOMATIC	SLC16A10	ROS1	6	6	111518235	117739561	Intron of SLC16A10(+): 10Kb before exon 4	Intron of ROS1(-): 64bp after exon 2	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (ROS1-SLC16A10)	6221326	NA	0	9	12	9
P-0003529-T01-IM5	SOMATIC	c.1941+57	c.1941+57	4	4	1739486	1808668	Intron of TACC3(+): 57bp after exon 10	Intron of FGFR3(+): 7bp after exon 17	GRCh37	DUPLICATION	c.1941+57:TACC3_c.2274+7:FGFR3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	69182	NA	0	41	72	45
P-0003560-T01-IM5	SOMATIC	c.1726_*7586inv	c.1726_*7586inv	5	5	67591133	67601015	Exon 7 of PIK3R1(+)	IGR: 3Kb after PIK3R1(+)	GRCh37	INVERSION	c.1726_*7586inv	PRECISE		MANUAL_OK	3to3	-	9882	NA	0	26	42	24
P-0003700-T01-IM5	SOMATIC	NOTCH2	NOTCH2	1	1	120503045	120506492	Intron of NOTCH2(-): 920bp before exon 12	Intron of NOTCH2(-): 62bp before exon 11	GRCh37	DUPLICATION	NOTCH2 (NM_024408) rearrangement: c.1682-62_c.1916-920dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon: in frame	3447	NA	0	5	16	5
P-0003850-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55155821	55221769	Intron of EGFR(+): 54Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion (exons 2 to 7) : c.89-54158_813del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	65948	NA	0	89	111	135
P-0003853-T01-IM5	SOMATIC	MAP3K13	MAP3K13	3	3	185079123	185161420	Promoter of MAP3K13(+): 2Kb from tx start	Exon 4 of MAP3K13(+)	GRCh37	DUPLICATION	MAP3K13 (NM_004721) rearrangement : c.-2119_847dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	82297	NA	0	7	16	7
P-0003853-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1740105	1808680	Intron of TACC3(+): 676bp after exon 10	Intron of FGFR3(+): 19bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1 to 17 with TACC3 exons 11 to 16)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	68575	NA	0	9	14	10
P-0004203-T01-IM5	SOMATIC	CDK5RAP2	BRAF	9	7	123251876	140491585	Intron of CDK5RAP2(-): 2Kb after exon 13	Intron of BRAF(-): 3Kb after exon 8	GRCh37	TRANSLOCATION	CDK5RAP2 (NM_018249) - BRAF (NM_004333) rearrangement: t(7;9)(7q34;9q33.2)(chr7:140491585::chr9:123251876)	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (CDK5RAP2-BRAF)	0	NA	0	71	25	62
P-0004306-T01-IM5	SOMATIC	EWSR1	NR4A3	22	9	29693194	102590175	Intron of EWSR1(+): 623bp before exon 12	Intron of NR4A3(+): 148bp before exon 2	GRCh37	TRANSLOCATION	EWSR1(NM_013986) - NR4A3(NM_006981) Fusion (EWSR1 exon 13 fused to NR4A3 exon 3) :  t(22;9)(22q12.2;9q22.33)(chr22:g29693194::chr9:g.102590175)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (EWSR1-NR4A3)	0	NA	0	15	10	15
P-0004400-T01-IM5	SOMATIC	CBL	CBL	11	11	119148923	119152973	Exon 8 of CBL(+)	Intron of CBL(+): 3Kb before exon 10	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1143_c.1432-2706del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4050	NA	0	11	15	11
P-0004405-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57487215	57492672	Exon 6 of NAB2(+)	Exon 18 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) -STAT6(NM_003153) Fusion ( NAB2  exon 6 fused to STAT6 exon 18) :  c.1302:NAB2_c.1969:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (NAB2-STAT6)	5457	NA	0	17	26	17
P-0004650-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	42358230	53240766	IGR: 278Kb before PPP1R2P9(-)	Exon 10 of KDM5C(-)	GRCh37	INVERSION	KDM5C(NM_004187) Rearrangement : chrX:g.42358230_c.1314:KDM5Cinv	PRECISE		MANUAL_OK	3to3	-	10882536	NA	0	34	39	32
P-0004650-T01-IM5	SOMATIC	KDM5C	KDM5C	X	X	53245059	53629392	Exon 7 of KDM5C(-)	Intron of HUWE1(-): 133bp after exon 28	GRCh37	INVERSION	KDM5C(NM_004187) Rearrangement : c.881:KDM5C_chrX:g.53629392inv	PRECISE		MANUAL_OK	3to3	-	384333	NA	0	21	32	21
P-0004694-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739237	1808881	Intron of TACC3(+): 88bp before exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3(NM_000142) -TACC3(NM_006342) Fusion ( FGFR3 exon 17 fused with TACC3 exon 9) :  c.2313:FGFR3_c.1837-88:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69644	NA	0	5	9	5
P-0005180-T01-IM5	SOMATIC	ARID1B	ARID1B	6	6	157491552	157528368	Intron of ARID1B(+): 3Kb after exon 10	Exon 20 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.3025_c.6093del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	36816	NA	0	13	27	13
P-0005615-T03-IM5	SOMATIC	ERCC5	ERCC5	19	1	45860754	44301803	Exon 14 of ERCC2(-)	Intron of ST3GAL3(+): 2Kb before exon 5	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) rearrangement: t(19;1)(q13.32;p34.1)(chr19:g.45860754::chr1:g.44301803)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	25	31
P-0005900-T02-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120480172	120480799	Intron of NOTCH2(-):83bp before exon 21	Intron of NOTCH2(-):166bp before exon 20	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.3338-83_c.3184-166del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	627	NA	0	13	10	14
P-0005900-T02-IM6	SOMATIC	TRAP1	CREBBP	16	16	3725255	3790533	Intron of TRAP1(-):69bp after exon 7	Exon 24 of CREBBP(-)	GRCh37	DUPLICATION	TRAP1 (NM_016292) - CREBBP (NM_004380) rearrangement: c.888+70:TRAP1_c.4000:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAP1:CREBBP}	65278	NA	0	5	10	5
P-0005900-T02-IM6	SOMATIC	WWOX	PLK2	16	5	78828029	57753806	Intron of WWOX(+):361Kb after exon 8	Intron of PLK2(-):104bp after exon 5	GRCh37	TRANSLOCATION	WWOX (NM_016373) - PLK2 (NM_006622) rearrangement: t(5,16)(q11.2,q23.1)(chr5:g.57753806::chr16:g.78828029)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	12	10	12
P-0005900-T02-IM6	SOMATIC	CENPA	CENPA	17	2	46665305	27009023	Promoter of HOXB-AS3(+):2Kb from tx start	5-UTR of CENPA(+):41bp before coding start	GRCh37	TRANSLOCATION	CENPA (NM_001809) rearrangement: t(2,17)(p23.2,q21.32)(chr2:g.27009023::chr17:g.46665305)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	10	61
P-0005912-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55192936	55222574	Intron of EGFR(+): 17Kb before exon 2	Intron of EGFR(+): 729bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-17043_889+729del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	29638	NA	0	52	39	48
P-0024991-T01-IM6	SOMATIC	FGFR3	ROBO1	4	3	1808963	78737098	Exon 18 of FGFR3(+)	Intron of ROBO1(-):699bp after exon 9	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - ROBO1 (NM_002941) fusion: t(3;4)(p12.3;p16.3)(chr3:g.78737098::chr4:g.1808963)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FGFR3:ROBO1}	0	NA	0	8	0	8
P-0034395-T01-IM6	SOMATIC	STK11	STK11	19	19	1200216	1207244	IGR: 6Kb before STK11(+)	Intron of STK11(+):42bp after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.290+42:STKL11_chr19:g.1200216del	PRECISE		MANUAL_OK	3to5	-	7028	NA	0	3	6	3
P-0038352-T03-IM6	SOMATIC	MET	MET	7	7	116411475	116412815	Intron of MET(+):76bp before exon 13	Intron of MET(+):772bp after exon 14	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2731-77_c.3028+772del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1340	NA	0	12	10	14
P-0039159-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2118141	2121920	Intron of TSC2(+):2Kb before exon 17	Exon 19 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1717-2316_c.2082del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3779	NA	0	68	10	81
P-0039159-T01-IM6	SOMATIC	AGO2	PTK2	8	8	141549343	141722624	Intron of AGO2(-):75bp after exon 16	Intron of PTK2(-):5Kb after exon 23	GRCh37	DUPLICATION	AGO2 (NM_012154) - PTK2 (NM_005607) rearrangement: c.2169+76:AGO2_c.2208+5073:PTK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {AGO2:PTK2}	173281	NA	0	40	10	41
P-0039167-T01-IM6	SOMATIC	PAK7	PAK7	20	20	9546638	47092196	Exon 5 of PAK7(-)	IGR: 104Kb before LINC00494(+)	GRCh37	INVERSION	PAK7 (NM_177990) rearrangement: c.1384:PAK7_chr20:g.47092196inv	PRECISE		MANUAL_OK	3to3	-	37545558	NA	0	7	8	7
P-0039388-T01-IM6	SOMATIC	ERCC2	ERCC2	19	1	45867598	3806804	Intron of ERCC2(-):9bp before exon 9	Intron of C1orf174(-):167bp before exon 4	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) rearrangement: t(1;19)(p36.32;q13.32)(chr1:g.3806804::chr19:g.45867598)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	121	10	120
P-0039388-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55201110	55222444	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):599bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-8869_c.889+599del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	21334	NA	0	35	0	185
P-0039388-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268620	55271898	Intron of EGFR(+):260bp before exon 25	Intron of EGFR(+):1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-261_c.3272-1051del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3278	NA	0	52	0	1167
P-0039439-T01-IM6	SOMATIC	AKAP12	E2F3	6	6	20490174	151610669	Intron of E2F3(+):224bp before exon 7	Intron of AKAP12(+):16Kb before exon 3	GRCh37	DUPLICATION	AKAP12 (NM_005100) - E2F3 (NM_001949) rearrangement: c.163-16213:AKAP12_c.1136-225:E2F3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {AKAP12:E2F3}	131120495	NA	0	10	6	10
P-0039473-T01-IM6	SOMATIC	MSH3	MSH3	5	5	80004830	80083252	Intron of MSH3(+):16Kb before exon 9	Intron of MSH3(+):131bp before exon 18	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: c.1341-16442_c.2436-132inv	PRECISE		MANUAL_OK	5to5	-	78422	NA	0	13	10	14
P-0039499-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42858719	42866629	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):124bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.127-124_c.556+1602inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7910	NA	0	10	10	12
P-0039501-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55155315	55223028	Intron of EGFR(+):55Kb before exon 2	Intron of EGFR(+):494bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-54664_c.890-495del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	67713	NA	0	99	10	109
P-0006500-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55185064	55223229	Intron of EGFR(+): 25Kb before exon 2	Intron of EGFR(+): 294bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-24915__c.890-294del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	38165	NA	0	43	60	43
P-0006796-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187522017	187530425	Intron of FAT1(-): 406bp after exon 21	Exon 16 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement : c.10118_11640+406inv	PRECISE		MANUAL_OK	3to3	-	8408	NA	0	53	73	38
P-0006796-T01-IM5	SOMATIC	FAT1	FAT1	4	4	187524103	187530762	Exon 20 of FAT1(-)	Intron of FAT1(-): 193bp after exon 15	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement : c.10068+193_11436inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	6659	NA	0	34	82	34
P-0006856-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	39830757	42872207	Intron of ERG(-): 13Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) fusion (TMPRSS2 exon 1 fused with ERG exons 4-11): c.56-2091:TMPRSS2_c.40-13213:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3041450	NA	0	102	70	108
P-0006856-T02-IM5	SOMATIC	MAP3K1	C5orf64	5	5	56178481	60995596	Exon 14 of MAP3K1(+)	Intron of FLJ37543(+): 4Kb before exon 4	GRCh37	DELETION	MAP3K1 (NM_005921) - C5orf64 (NM_173667) rearrangement: c.3454:MAP3K1_c.226-4097:C5orf64del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MAP3K1-FLJ37543)	4817115	NA	0	39	33	27
P-0007503-T01-IM5	SOMATIC	NF1	NF1	17	17	29701084	29705972	Exon 57 of NF1(+)	IGR: 1Kb after NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.8431_c.*4799del.	PRECISE		MANUAL_OK	3to5	-	4888	NA	0	22	26	22
P-0007980-T01-IM5	SOMATIC	PIM1	PIM1	7	6	30811615	37138620	Intron of FAM188B(+): 443bp after exon 1	Exon 2 of PIM1(+)	GRCh37	TRANSLOCATION	PIM1 (NM_002648) rearrangement: t(6;7)(p21.2;p14.3)(chr6:g.37138620::chr7:g.30811615 )	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	13	14
P-0010537-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11937333	12007634	Intron of ETV6(+): 32Kb after exon 2	Intron of ETV6(+): 1Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) Rearrangement : c.163+31820_463+1139dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	70301	NA	0	84	93	74
P-0010537-T01-IM5	SOMATIC	PPP2R1A	PPP2R1A	19	10	52724231	95055215	Intron of PPP2R1A(+): 1bp before exon 12	IGR: 11Kb before MYOF(-)	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) rearrangement: t(10;19)(q23.33;q13.41)(chr10:g.95055215::chr19:g.52724231)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	40	48	40
P-0011515-T01-IM5	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859816	42871070	Intron of TMPRSS2(-): 505bp after exon 5	Intron of TMPRSS2(-): 954bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099)  Rearrangement : c.56-954_c.556+505inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	11254	NA	0	22	36	12
P-0011537-T01-IM5	SOMATIC	EGFL7	EGFL7	9	3	139564655	59696693	Exon 7 of EGFL7(+)	IGR: 38Kb before FHIT(-)	GRCh37	TRANSLOCATION	EGFL7 (NM_201446) rearrangement: t(3;9)(p14.2;q34.3)(chr3:g.59696693::chr9:g.139564655)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	34	29
P-0011555-T01-IM5	SOMATIC	SDHAF2	SDHAF2	11	11	61205582	61213409	Exon 3 of SDHAF2(+)	Intron of SDHAF2(+): 4bp before exon 4	GRCh37	DELETION	SDHAF2 (NM_017841) rearrangement: c.367_c.371-4del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7827	NA	0	8	23	8
P-0011555-T01-IM5	SOMATIC	FAM65B	SDHAF2	11	6	61205093	24806597	Intron of SDHAF2(+): 4bp before exon 2	3-UTR of FAM65B(-): 4bp after coding stop	GRCh37	TRANSLOCATION	FAM65B (NM_014722) - SDHAF2 (NM_017841) rearrangement: t(6;11)(p22.3;q12.2)(chr6:g.24806597::chr11:g.61205093)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	7	5
P-0012048-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	39884663	42869860	Intron of ERG(-): 63Kb after exon 3	Intron of TMPRSS2(-): 186bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+186:TMPRSS2_c.39+62923:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2985197	NA	0	48	43	43
P-0012730-T02-IM5	SOMATIC	BRCA1	BRCA1	17	17	41231314	41240375	Intron of BRCA1(-): 37bp after exon 13	Intron of BRCA1(-): 3Kb after exon 10	GRCh37	DELETION	BRCA1 (NM_007294) Rearrangement: c.4185+2586_4358-2683del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	9061	NA	0	32	78	30
P-0012736-T01-IM5	SOMATIC	CDKN2A	CDKN2A	9	9	21971114	21974215	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-): 462bp after exon 1	GRCh37	DELETION	CDKN2A (NM_000077, NM_058195) rearrangement: c.150+462_c.244del:CDKN2Ap16INK4A ,  c.194-3008_c.287del:CDKN2Ap14ARF	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3101	NA	0	23	29	20
P-0013000-T01-IM5	SOMATIC	FANCA	FANCA	16	16	89838310	89954326	Intron of FANCA(-): 88bp before exon 23	Intron of TCF25(+): 201bp after exon 5	GRCh37	DELETION	FANCA (NM_000135) Rearrangement :  c.2015-88:FANCA_c.614+201:TCF25del	PRECISE		MANUAL_OK	3to5	-	116016	NA	0	21	25	18
P-0013000-T01-IM5	SOMATIC	AKAP8	NOTCH3	19	19	15284910	15469419	Exon 25 of NOTCH3(-)	Intron of AKAP8(-): 359bp after exon 13	GRCh37	DELETION	AKAP8 (NM_005858) -NOTCH3  (NM_000435) Rearrangement : c.1623+359:AKAP8_c.4705:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (AKAP8-NOTCH3)	184509	NA	0	54	66	53
P-0013106-T01-IM5	SOMATIC	AXIN1	AXIN1	16	16	331906	359920	Exon 2 of ARHGDIG(+)	Intron of AXIN1(-): 53bp after exon 4	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: chr16:g.331906_c.1116+53:AXIN1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	28014	NA	0	5	9	5
P-0013106-T01-IM5	SOMATIC	POLD1	POLD1	19	19	50910654	56784053	Exon 14 of POLD1(+)	IGR: 51Kb before ZSCAN5A(-)	GRCh37	DELETION	POLD1 (NM_002691) rearrangement: c.1757:POLD1_chr19:g.56784053del	PRECISE		MANUAL_OK	3to5	-	5873399	NA	0	102	117	158
P-0013148-T01-IM5	SOMATIC	FGFR2	PRKAG2	10	7	123242755	151515373	Intron of FGFR2(-): 457bp after exon 16	Intron of PRKAG2(-): 32Kb before exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - PRKAG2 (NM_016203) Rearrangement : t(7;10)(7q36.1;10q26.13) (chr7:g.151515373::chr10:12324275)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	14	9	14
P-0013503-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39858543	42875718	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused with ERG exons 2-10): c.55+4160:TMPRSS2_c.18+11744:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3017175	NA	0	100	10	112
P-0013625-T01-IM5	SOMATIC	ARID5B	ARID5B	10	10	63810358	63817020	Intron of ARID5B(+): 289bp before exon 5	Exon 6 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.734-289_c.991del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	6662	NA	0	10	16	10
P-0013625-T01-IM5	SOMATIC	CTNNB1	CTNNB1	3	3	41263436	41267260	5-UTR of CTNNB1(+): 2Kb before coding start	Exon 6 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.-48-2076_c.844del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3824	NA	0	42	46	42
P-0013711-T01-IM5	SOMATIC	BAP1	BAP1	3	3	52439826	74626725	Exon 10 of BAP1(-)	IGR: 56Kb after CNTN3(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.886_chr3:g.74626725del	PRECISE		MANUAL_OK	3to5	-	22186899	NA	0	87	66	85
P-0013831-T01-IM5	SOMATIC	CDK12	CDK12	17	17	37597504	37627386	Intron of MED1(-): 574bp before exon 4	Exon 2 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: chr17:g.37597504_c.1301:CDK12del	PRECISE		MANUAL_OK	3to5	-	29882	NA	0	25	40	24
P-0014073-T01-IM5	SOMATIC	NEGR1	NEGR1	1	1	72488437	72748176	Intron of NEGR1(-): 87Kb before exon 2	Exon 1 of NEGR1(-)	GRCh37	DELETION	NEGR1 (NM_173808) rearrangment: c.2_c.177-87443del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	259739	NA	0	11	35	11
P-0014261-T01-IM6	SOMATIC	NF1	NF1	17	17	29653401	29663660	Intron of NF1(+): 131bp after exon 36	Exon 41 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.5268+131_c.6155inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	10259	NA	0	9	12	9
P-0014261-T01-IM6	SOMATIC	SYK	SYK	9	9	93641062	134211866	Exon 10 of SYK(+)	IGR: 47Kb before PPAPDC3(+)	GRCh37	INVERSION	SYK (NM_003177) rearrangement: c.1408:SYK_chr9:g.134211866inv	PRECISE		MANUAL_OK	5to5	-	40570804	NA	0	35	61	35
P-0014629-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914889	42874227	Intron of ERG(-): 33Kb after exon 3	Intron of TMPRSS2(-): 4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused to ERG exon3): c.56-4111:TMPRSS2_c.39+32697:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2959338	NA	0	81	47	70
P-0014634-T01-IM6	SOMATIC	CIC	CIC	19	19	42796385	42803409	Intron of CIC(+): 26bp after exon 12	Intron of PAFAH1B3(-): 713bp after exon 4	GRCh37	DELETION	CIC (NM_015125) Rearrangement : c.3008+26:CIC_chr19:42803409del	PRECISE		MANUAL_OK	3to5	Antisense fusion	7024	NA	0	49	56	38
P-0014845-T01-IM6	SOMATIC	RNF43	RNF43	17	10	56492793	70817986	Exon 2 of RNF43(-)	IGR: 30Kb before SRGN(+)	GRCh37	TRANSLOCATION	RNF43 (NM_017763) rearrangement: t(10;17)(q22.1;q22)(chr10:g.70817986::chr17:g.56492793)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	49	31	49
P-0014845-T01-IM6	SOMATIC	TP53	PIK3C2G	17	12	7587706	18473920	5-UTR of TP53(-): 8Kb before coding start	Exon 7 of PIK3C2G(+)	GRCh37	TRANSLOCATION	TP53 (NM_0005460 - PIK3C2G (NM_004570) rearrangement: t(12;17)(p12.3;p13.1)(chr12:g.18473920::chr17:g.7587706)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (TP53-PIK3C2G)	0	NA	0	7	5	7
P-0016983-T02-IM6	SOMATIC	DNAJB1	DNAJB1	19	19	14628930	47623580	Intron of DNAJB1(-):20bp after exon 1	IGR: 10Kb before SAE1(+)	GRCh37	INVERSION	DNAJB1 (NM_006145) Rearrangement : 19:47623580_c.211+21:DNAJB1inv	PRECISE		MANUAL_OK	3to3	-	32994650	NA	0	28	10	28
P-0016983-T02-IM6	SOMATIC	UPF1	UPF1	19	19	18976395	58978895	Exon 22 of UPF1(+)	5-UTR of ZNF324(+):2Kb before coding start	GRCh37	INVERSION	UPF1 (NM_002911) Rearrangement : c.3045:UPF1_chr19:g.58978895inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	40002500	NA	0	31	10	30
P-0016983-T02-IM6	SOMATIC	TMPRSS2	ERG fusion	21	21	39832975	42867872	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG fusion (NM_182918) fusion (TMPRSS2 exon 1-2 fused to ERG exons 2-10): c.127-1367:TMRPSS2_c.19-15431:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3034897	NA	0	93	10	100
P-0020476-T01-IM6	SOMATIC	ERCC2	ERCC2	19	1	45862055	28413741	Intron of ERCC2(-):1Kb before exon 13	3-UTR of EYA3(-):1Kb after coding stop	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) Rearrangement : t(1;19)(p35.3; q13.32)(chr1:g.28413741::chr19:g.45862055)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	51	10	68
P-0020592-T01-IM6	SOMATIC	ROS1	ROS1	6	6	21888762	117648287	5-UTR of CASC15(+):306Kb before coding start	Intron of ROS1(-):710bp before exon 33	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: g.21888762_c.5367-710del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	95759525	NA	0	43	10	44
P-0020608-T01-IM6	SOMATIC	TP53	TP53	17	12	7579685	98491631	Intron of TP53(-):14bp after exon 3	IGR: 102Kb before MIR4303(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(12:17)(q23.1;p13.1)(chr12:g.98491631::chr17:g.7579685)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	103	10	115
P-0020700-T01-IM6	SOMATIC	FAM46C	FAM46C	6	1	56246966	118165740	3-UTR of RNU6-71P(-):368Kb after coding stop	Exon 2 of FAM46C(+)	GRCh37	TRANSLOCATION	FAM46C (NM_017709) rearrangement: t(1:6)(p12;p12.1)(chr1:g.118165740::chr6:g.56246966)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0020843-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878087	42868436	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRRS2 exon 1 fused to ERG exons 4-11):c.126+1610:TMPRSS2_c.40-60543:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2990349	NA	0	44	10	50
P-0020872-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55192784	55221898	Intron of EGFR(+):17Kb before exon 2	Intron of EGFR(+):53bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17195_c.889+53del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	29114	NA	0	44	10	56
P-0020950-T01-IM6	SOMATIC	EP300	EP300	22	22	41560209	41568603	Intron of EP300(+):75bp after exon 22	Exon 28 of EP300(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.3806+75_c.4553inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8394	NA	0	67	10	66
P-0020984-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861827	42871570	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRRS2 exon 1 fused to ERG exons 2-10): c.56-1454:TMPRSS2_c.18+8460:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009743	NA	0	53	10	57
P-0021039-T02-IM6	SOMATIC	KMT2D	SOBP	12	6	49431649	107938913	Exon 34 of KMT2D(-)	Intron of SOBP(+):16Kb before exon 6	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - SOBP (NM_018013) rearrangement: t(6;12)(q21;q13.12)(chr6:g.107938913::chr12:g.49431649)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:SOBP}	0	NA	0	27	10	55
P-0021039-T02-IM6	SOMATIC	ZNF451	ARID1B	6	6	56998504	157099755	Intron of ZNF451(+):514bp after exon 6	Exon 1 of ARID1B(+)	GRCh37	DELETION	ZNF451 (NM_001031623) - ARID1B (NM_020732) rearrangement: c.575+514:ZNF451_c.692:ARID1Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZNF451:ARID1B}	100101251	NA	0	95	10	116
P-0021179-T01-IM6	SOMATIC	PTPN11	PTPN11	22	12	25404722	112927045	IGR: 19Kb before KIAA1671(+)	Intron of PTPN11(+):66bp after exon 13	GRCh37	TRANSLOCATION	PTPN11 (NM_002834) rearrangement: t(12;22)(q24.13;q11.23)(chr12:g.112927045::chr22:g.25404722)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	37	10	40
P-0021297-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39803320	42869175	Intron of ERG(-):8Kb before exon 3	Intron of TMPRSS2(-):870bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) (TMPRSS2 exons 1-2 fused with ERG exons 3-10):c.126+871:TMPRSS2_c.237-7837:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3065855	NA	0	27	10	29
P-0021310-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39893675	42868727	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DUPLICATION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.39+53911:ERG_c.126+1319:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERG:TMPRSS2}	2975052	NA	0	108	10	125
P-0039125-T01-IM6	SOMATIC	CDH1	CDH1	19	16	23234910	68862050	Promoter of LOC101929144(-):3Kb from tx start	Intron of CDH1(+):26bp before exon 14	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(16;19)(q22.1;p12)(chr16:g.68862050::chr19:g.23234910)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {LOC101929144:CDH1}	0	NA	0	22	10	25
P-0039125-T01-IM6	SOMATIC	AKAP8L	CDK12	19	17	15529663	37627994	Intron of AKAP8L(-):58bp after exon 1	Exon 2 of CDK12(+)	GRCh37	TRANSLOCATION	AKAP8L (NM_014371) - CDK12 (NM_016507) rearrangement: t(17;19)(q12;p13.12)(chr17:g.37627994::chr19:g.15529663)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {AKAP8L:CDK12}	0	NA	0	10	10	12
P-0039125-T01-IM6	SOMATIC	ERBB2	CRTC1	19	17	18875517	37882136	Intron of CRTC1(+):696bp before exon 9	Intron of ERBB2(+):30bp after exon 23	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) - CRTC1 (NM_001098482) rearrangement: t(17;19)(q12;p13.11)(chr17:g.37882136::chr19:g.18875517)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERBB2:CRTC1}	0	NA	0	36	10	37
P-0039125-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	83384332	89498396	IGR: 1Mb before LINC00971(-)	Exon 14 of EPHA3(+)	GRCh37	INVERSION	EPHA3 (NM_005233) rearrangement: c.2368:EPHA3_chr3:g.83384332inv	PRECISE		MANUAL_OK	5to5	-	6114064	NA	0	4	8	4
P-0039132-T01-IM6	SOMATIC	ATM	ATM	11	11	88962170	108099854	Intron of TYR(+):1Kb after exon 3	Intron of ATM(+):50bp before exon 4	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.186-51:ATM_chr11:g.88962170inv	IMPPRECISE		MANUAL_OK	5to5	-	19137684	NA	0	5	0	5
P-0039480-T01-IM6	SOMATIC	NAB2	NAB2	12	12	54655657	57485674	5-UTR of CBX5(-):20Kb before coding start	Exon 2 of NAB2(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.850:NAB2_chr12:g.54655657inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CBX5:NAB2}	2830017	NA	0	818	10	1180
P-0037712-T01-IM6	SOMATIC	ARID1A	GPATCH3	1	1	27102127	27222129	Exon 19 of ARID1A(+)	Intron of GPATCH3(-):1Kb before exon 3	GRCh37	INVERSION	ARID1A (NM_006015) - GPATCH3 (NM_022078) rearrangement: c.5053:ARID1A_c.877-1228:GPATCH3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1A:GPATCH3}	120002	NA	0	27	10	26
P-0037712-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86574220	86659309	Intron of RASA1(+):9Kb after exon 1	Exon 11 of RASA1(+)	GRCh37	DUPLICATION	RASA1 (NM_002890) rearrangement: c.539+9413_c.1598dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	85089	NA	0	7	10	7
P-0037718-T01-IM6	SOMATIC	KMT2D	FAM149B1	12	10	49446311	74969560	Intron of KMT2D(-):35bp after exon 9	Intron of FAM149B1(+):448bp before exon 7	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - FAM149B1 (NM_173348) rearrangement: t(10;12)(q22.2;q13.12)(chr10:g.74969560::chr12:g.49446311)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KMT2D:FAM149B1}	0	NA	0	38	10	41
P-0037718-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48650328	54291385	Exon 3 of GATA1(+)	Intron of WNK3(-):6Kb before exon 11	GRCh37	DUPLICATION	GATA1 (NM_002049) rearrangement: c.298:GATA1_chrX:g.54291385dup	PRECISE		MANUAL_OK	5to3	-	5641057	NA	0	4	6	4
P-0037724-T01-IM6	SOMATIC	CIC	CIC	19	19	42793198	42806688	Exon 7 of CIC(+)	5-UTR of PAFAH1B3(-):5Kb before coding start	GRCh37	DUPLICATION	CIC (NM_015125) rearrangement: c.1090:CIC_chr19:g.42806688dup	PRECISE		MANUAL_OK	5to3	-	13490	NA	0	9	10	9
P-0039692-T01-IM6	SOMATIC	CSF1R	CSF1R	11	5	126825443	149452835	Intron of KIRREL3(-):45Kb after exon 1	Intron of CSF1R(-):28bp after exon 7	GRCh37	TRANSLOCATION	CSF1R (NM_005211) rearrangement: t(5;11)(q32;q24.2)(chr5:g.149452835::chr11:g.126825443)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	18	10	24
P-0039692-T01-IM6	SOMATIC	AXL	AXL	19	7	41759410	80327250	Intron of AXL(+):93bp before exon 17	IGR: 45Kb before SEMA3C(-)	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(7;19)(q21.11;q13.2)(chr7:g.80327250::chr19:g.41759410)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0008447-T02-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48895880	79957482	Exon 4 of TFE3(-)	Intron of ASPSCR1(+):3Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion: t(17;X)(q25.3;p11.23)(chr17:g.79957482::chrX:g.48895880)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASPSCR1:TFE3}	0	NA	0	10	10	25
P-0026492-T02-IM6	SOMATIC	SMO	SMO	7	7	117726946	128848415	IGR: 97Kb before LSM8(+)	Intron of SMO(+):184bp before exon 7	GRCh37	INVERSION	SMO (NM_005631) rearrangement: c.1265-185:SMO_chr7:g.117726946inv	PRECISE		MANUAL_OK	5to5	-	11121469	NA	0	9	10	10
P-0027319-T02-IM6	SOMATIC	PIK3R3	PIK3R3	18	1	60306514	46509476	IGR: 76Kb before PHLPP1(+)	Exon 10 of PIK3R3(-)	GRCh37	TRANSLOCATION	PIK3R3 (NM_003629) rearrangement: t(1;18)(p34.1;q21.33)(chr1:g.46509476::chr18:g.60306514)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	8
P-0039584-T01-IM6	SOMATIC	FER1L6	AGO2	8	8	125053484	141566388	Intron of FER1L6(+):1Kb after exon 20	Intron of AGO2(-):3bp before exon 9	GRCh37	INVERSION	FER1L6 (NM_001039112) - AGO2 (NM_012154) rearrangement: c.2589+1237:FER1L6_c.1027-3:AGO2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FER1L6:AGO2}	16512904	NA	0	73	10	72
P-0039590-T01-IM6	SOMATIC	RPTOR	TRAF7	17	16	78576760	2226123	Intron of RPTOR(+):23Kb before exon 2	Exon 19 of TRAF7(+)	GRCh37	TRANSLOCATION	RPTOR (NM_020761) - TRAF7 (NM_032271) rearrangement: t(16;17)(p13.3;q25.3)(chr16:g.2226123::chr17:g.78576760)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	10	12
P-0039593-T01-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48892582	79955167	Intron of TFE3(-):816bp before exon 6	Intron of ASPSCR1(+):445bp after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion: t(17;X)(q25.3;p11.23)(chr17:g.79955167::chrX:g.48892582)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	34	10	34
P-0039594-T01-IM6	SOMATIC	RET	RET	19	10	11067799	43611995	IGR: 4Kb before SMARCA4(+)	Intron of RET(+):36bp before exon 12	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(10;19)(q11.21;p13.2)(chr10:g.43611995::chr19:g.11067799)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	193	10	209
P-0121537-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72985011	73066880	Intron of ZFHX3(-):147bp before exon 3	5-UTR of ZFHX3(-):246Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2720-147:ZFHX3_chr16:g.73066880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	81869	NA	0	18	10	18
P-0039611-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10602675	10604754	Exon 3 of KEAP1(-)	Intron of KEAP1(-):2Kb before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-1816_c.903del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2079	NA	0	4	10	4
P-0039627-T01-IM6	SOMATIC	SMARCA4	CARM1	19	19	11007917	11144254	Intron of CARM1(+):8Kb before exon 2	Intron of SMARCA4(+):61bp after exon 26	GRCh37	DUPLICATION	SMARCA4 (NM_003072) - CARM1 (NM_199141) rearrangement: c.3774+61:SMARCA4_c.221-7710:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SMARCA4:CARM1}	136337	NA	0	31	10	33
P-0039630-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883468	37885513	Intron of ERBB2(+):79bp before exon 26	Promoter of ERBB2(+):29Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3160-80:ERBB2_chr17:g.37885513del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2045	NA	0	4	10	4
P-0121598-T01-IM6	SOMATIC	VAX2	TMEM127	2	2	71154515	96930984	Intron of VAX2(+):5Kb before exon 3	Exon 2 of TMEM127(-)	GRCh37	INVERSION	VAX2 (NM_012476) - TMEM127 (NM_001193304) rearrangement: c.436-5382:VAX2_c.136:TMEM127inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {VAX2:TMEM127}	25776469	NA	0	93	10	91
P-0039648-T01-IM6	SOMATIC	CUL1	BRAF	7	7	140492893	148460538	Intron of BRAF(-):1Kb after exon 8	Intron of CUL1(+):3Kb after exon 7	GRCh37	INVERSION	CUL1 (NM_003592) - BRAF (NM_004333) fusion: c.789+2950:CUL1_c.1140+1215:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CUL1:BRAF}	7967645	NA	0	138	10	137
P-0019783-T02-IM6	SOMATIC	CDK8	CDK8	13	13	26974766	30676512	Intron of CDK8(+):79bp after exon 10	IGR: 100Kb before KATNAL1(-)	GRCh37	DELETION	CDK8 (NM_001260) rearrangement: c.1031+79:CDK8_chr13:g.30676512del	PRECISE		MANUAL_OK	3to5	-	3701746	NA	0	32	10	33
P-0034669-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55191271	55222500	Intron of EGFR(+):19Kb before exon 2	Intron of EGFR(+):655bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-18708_c.889+655del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31229	NA	0	60	0	201
P-0039363-T01-IM6	SOMATIC	FAM134C	EZH1	17	17	40745352	40855129	Intron of FAM134C(-):1Kb before exon 2	Intron of EZH1(-):150bp before exon 20	GRCh37	DUPLICATION	FAM134C (NM_178126) - EZH1 (NM_001991) rearrangement: c.240-1172:FAM134C_c.2099-150:EZH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FAM134C:EZH1}	109777	NA	0	20	10	20
P-0039363-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38178528	38244539	Intron of WHSC1L1(-):61bp after exon 8	5-UTR of LETM2(+):6Kb before coding start	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.1809+62:WHSC1L1_chr8:g.38244539inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {WHSC1L1:LETM2}	66011	NA	0	35	10	35
P-0039554-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	41301399	41306588	Intron of PTPRT(-):5Kb after exon 7	Exon 7 of PTPRT(-)	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.1071_c.1153+5107del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5189	NA	0	29	10	29
P-0039569-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10265325	10265956	Exon 20 of DNMT1(-)	Intron of DNMT1(-):224bp before exon 19	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.1445-224_c.1721inv	PRECISE		MANUAL_OK	3to3	-	631	NA	0	65	10	65
P-0039597-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12020249	12038173	Intron of ETV6(+):2Kb before exon 5	Intron of ETV6(+):652bp after exon 6	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.464-2109_c.1152+652dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	17924	NA	0	24	10	24
P-0039644-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	127750434	169952891	IGR: 21Kb before SEC61A1(+)	Intron of PRKCI(+):126bp before exon 2	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.102-127:PRKCI_chr3:g.127750434del	PRECISE		MANUAL_OK	3to5	-	42202457	NA	0	13	7	13
P-0039649-T01-IM6	SOMATIC	RB1	RB1	13	13	49033880	49038263	Exon 20 of RB1(+)	Intron of RB1(+):292bp after exon 21	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2017_c.2211+292del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4383	NA	0	73	10	79
P-0039652-T01-IM6	SOMATIC	BLM	BLM	15	15	90779259	91308542	3-UTR of CIB1(-):30Kb after coding stop	Exon 9 of BLM(+)	GRCh37	DELETION	BLM (NM_000057) rearrangement: c.2091:BLM_chr15:g.90779259del	PRECISE		MANUAL_OK	3to5	-	529283	NA	0	10	10	10
P-0039680-T01-IM6	SOMATIC	EIF4A2	EIF4A2	10	3	113877258	186506982	IGR: 32Kb before GPAM(-)	Exon 11 of EIF4A2(+)	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(3;10)(q27.3;q25.2)(chr3:g.186506982::chr10:g.113877258)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0039688-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684082	128678290	Intron of EWSR1(+):512bp before exon 9	Intron of FLI1(+):761bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128678290::chr22:g.29684082)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	38	10	39
P-0023958-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39819697	42868330	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-2153:ERG_c.126+1716:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERG:TMPRSS2}	3048633	NA	0	87	10	96
P-0027619-T03-IM6	SOMATIC	CREBBP	CREBBP	16	16	3827899	3830269	Intron of CREBBP(-):112bp after exon 10	Intron of CREBBP(-):463bp after exon 8	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.1823+464_c.2113+113dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	2370	NA	0	5	7	5
P-0027619-T03-IM6	SOMATIC	MET	MET	7	2	116398703	48468349	Intron of MET(+):29bp after exon 9	IGR: 73Kb before FOXN2(+)	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(2;7)(p16.3;q31.2)(chr2:g.48468349::chr7:g.116398703)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	20
P-0027619-T03-IM6	SOMATIC	CFAP99	DUSP4	8	4	29194947	2448452	Intron of DUSP4(-):19bp before exon 4	Intron of CFAP99(+):1Kb after exon 6	GRCh37	TRANSLOCATION	CFAP99 (NM_001193282) - DUSP4 (NM_001394) rearrangement: t(4;8)(p16.3;p12)(chr4:g.2448452::chr8:g.29194947)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CFAP99:DUSP4}	0	NA	0	30	10	30
P-0039640-T01-IM6	SOMATIC	INSR	INSR	19	5	7152854	53033886	Exon 10 of INSR(-)	IGR: 147Kb before ARL15(-)	GRCh37	TRANSLOCATION	INSR (NM_000208) rearrangement: t(5;19)(q11.2;p13.2)(chr5:g.53033886::chr19:g.7152854)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	7
P-0039690-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99164921	99460035	IGR: 24Kb before IRAIN(-)	Exon 10 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.2131:IGF1R_chr15:g.99164921del	IMPPRECISE		MANUAL_OK	3to5	-	295114	NA	0	5	0	5
P-0039690-T01-IM6	SOMATIC	NBN	NBN	8	8	90982602	91222720	Exon 7 of NBN(-)	IGR: 11Kb before LINC00534(+)	GRCh37	DUPLICATION	NBN (NM_002485) rearrangement: c.886:NBN_chr8:g.91222720dup	PRECISE		MANUAL_OK	5to3	-	240118	NA	0	15	10	15
P-0039696-T01-IM6	SOMATIC	TMEM145	CIC	19	19	42795884	42823873	Exon 11 of CIC(+)	Intron of TMEM145(+):595bp before exon 13	GRCh37	DUPLICATION	TMEM145 (NM_173633) - CIC (NM_015125) rearrangement: c.1074-596:TMEM145_c.2873:CICdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMEM145:CIC}	27989	NA	0	4	10	5
P-0039698-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866680	42874374	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4258:TMPRSS2_c.18+3607:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007694	NA	0	3	10	3
P-0035722-T02-IM6	SOMATIC	JUN	JUN	1	1	59247917	61042535	Exon 1 of JUN(-)	IGR: 83Kb before LOC101926964(-)	GRCh37	INVERSION	JUN (NM_002228) rearrangement: c.826:JUN_chr1:g.61042535inv	PRECISE		MANUAL_OK	3to3	-	1794618	NA	0	3	10	3
P-0039378-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29686513	51191610	Intron of EWSR1(+):1Kb before exon 10	Intron of ATF1(+):2Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) rearrangement: t(12;22)(q13.12;q12.2)(chr12:g.51191610::chr22:g.29686513)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	57	10	63
P-0039657-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42871753	41632313	Intron of TMPRSS2(-):2Kb before exon 2	IGR: 27Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41632313::chr21:g.42871753)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	73	10	79
P-0039689-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39818672	42870319	Intron of ERG(-):1Kb before exon 2	Intron of TMPRSS2(-):203bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-203:TMPRSS2_c.19-1128:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3051647	NA	0	11	10	11
P-0039805-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11137099	55276048	Intron of SMARCA4(+):77bp after exon 23	IGR: 5Kb before LOC101928804(-)	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.3215+77:SMARCA4_chr19:g.55276048inv	PRECISE		MANUAL_OK	3to3	-	44138949	NA	0	33	10	34
P-0039805-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42847808	42872972	Intron of TMPRSS2(-):695bp after exon 8	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2856_c.838+696del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	25164	NA	0	71	10	71
P-0039805-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67592256	67667228	Intron of PIK3R1(+):87bp after exon 15	IGR: 79Kb before PIK3R1(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1985+87:PIK3R1_chr5:g.67667228inv	PRECISE		MANUAL_OK	3to3	-	74972	NA	0	19	10	19
P-0039808-T01-IM6	SOMATIC	ZNF532	MALT1	18	18	56412786	56617548	Intron of MALT1(+):111bp before exon 16	Intron of ZNF532(+):2Kb after exon 7	GRCh37	DUPLICATION	ZNF532 (NM_018181) - MALT1 (NM_006785) rearrangement: c.2868+2087:ZNF532_c.1912-112:MALT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ZNF532:MALT1}	204762	NA	0	24	9	24
P-0039808-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30676074	30741532	Exon 8 of MDC1(-)	IGR: 31Kb before IER3(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.2282:MDC1_chr6:g.30741532inv	PRECISE		MANUAL_OK	5to5	-	65458	NA	0	20	10	36
P-0000631-T03-IM6	SOMATIC	DNMT1	DNMT1	19	19	10244973	14487154	Exon 39 of DNMT1(-)	IGR: 5Kb before CD97(+)	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4736:DNMT1_chr19:g.14487154del	PRECISE		MANUAL_OK	3to5	-	4242181	NA	0	177	10	207
P-0000631-T03-IM6	SOMATIC	CLASP1	INSR	19	2	7152997	122236197	Intron of INSR(-):59bp before exon 10	Intron of CLASP1(-):9Kb before exon 9	GRCh37	TRANSLOCATION	CLASP1 (NM_015282) - INSR (NM_000208) rearrangement: t(2;19)(q14.2;p13.2)(chr2:g.122236197::chr19:g.7152997)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CLASP1:INSR}	0	NA	0	9	0	59
P-0000631-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39889111	42872632	Intron of ERG(-):58Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2516:TMPRSS2_c.39+58475:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2983521	NA	0	100	10	106
P-0000631-T03-IM6	SOMATIC	ELF3	ELF3	3	1	146132148	201984440	IGR: 19Kb before PLSCR2(-)	Exon 9 of ELF3(+)	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;3)(q32.1;q24)(chr1:g.201984440::chr3:g.146132148)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	14
P-0010096-T03-IM6	SOMATIC	ALK	ALK	2	2	29605717	29606673	Intron of ALK(-):880bp after exon 5	Exon 5 of ALK(-)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.1207_c.1282+881del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	956	NA	0	20	10	23
P-0010096-T03-IM6	SOMATIC	FGFR3	TACC3	4	4	1739807	1808925	Intron of TACC3(+):378bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2357:FGFR3_c.1941+378:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69118	NA	0	3	7	3
P-0022760-T02-IM6	SOMATIC	DOT1L	DOT1L	19	19	2227054	2227973	Exon 27 of DOT1L(+)	Intron of DOT1L(+):847bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4534_c.4606+847inv	PRECISE		MANUAL_OK	5to5	-	919	NA	0	2	8	2
P-0036214-T02-IM6	SOMATIC	SYK	SYK	9	9	87964462	93641060	IGR: 197Kb before AGTPBP1(-)	Exon 11 of SYK(+)	GRCh37	DELETION	SYK (NM_003177) rearrangement: c.1406:SYK_chr9:g.87964462del	PRECISE		MANUAL_OK	3to5	-	5676598	NA	0	41	10	42
P-0038634-T02-IM6	SOMATIC	NAB2	NAB2	12	12	57483770	57486542	Intron of NAB2(+):633bp after exon 1	Intron of NAB2(+):157bp before exon 4	GRCh37	DELETION	NAB2 (NM_005967) rearrangement: c.83+633_c.1092-158del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2772	NA	0	69	10	77
P-0038634-T02-IM6	SOMATIC	EPHA3	EPHA3	3	3	89383762	89391052	Intron of EPHA3(+):6Kb before exon 4	Exon 5 of EPHA3(+)	GRCh37	DUPLICATION	EPHA3 (NM_005233) rearrangement: c.815-6304_c.1118dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7290	NA	0	40	10	42
P-0038634-T02-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67587837	67591101	Intron of PIK3R1(+):249bp before exon 8	Exon 13 of PIK3R1(+)	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement: c.917-250_c.1694dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3264	NA	0	17	10	17
P-0039255-T02-IM6	SOMATIC	TP53	TP53	17	17	7573583	7579571	Intron of TP53(-):343bp after exon 10	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.116_c.1100+344del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5988	NA	0	12	10	15
P-0039255-T02-IM6	SOMATIC	EGFR	SEPT14	7	7	55270807	55878458	Intron of EGFR(+):489bp after exon 27	Intron of SEPT14(-):4Kb before exon 8	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion: c.3271+489:EGFR_c.818-3507:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	607651	NA	0	12	10	4
P-0039655-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739141	1808887	Intron of TACC3(+):86bp after exon 9	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2319:FGFR3_c.1836+86:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69746	NA	0	5	9	5
P-0039727-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27092752	27094744	Exon 9 of ARID1A(+)	Intron of ARID1A(+):254bp after exon 11	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2773_c.3198+254del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1992	NA	0	4	10	4
P-0039737-T01-IM6	SOMATIC	PREX2	PREX2	8	6	69031720	71339794	Exon 28 of PREX2(+)	IGR: 38Kb before SMAP1(+)	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(6;8)(q13;q13.2)(chr6:g.71339794::chr8:g.69031720)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	8	7
P-0039746-T01-IM6	SOMATIC	AKT1	AKT1	14	11	105246411	112596469	Intron of AKT1(-):13bp after exon 3	IGR: 192Kb before LOC387810(-)	GRCh37	TRANSLOCATION	AKT1 (NM_001014431) rearrangement: t(11;14)(q23.2;q32.33)(chr11:g.112596469::chr14:g.105246411)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	32	10	34
P-0039767-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	36935480	39179138	Intron of CSF3R(-):39bp before exon 11	IGR: 125Kb before RRAGC(-)	GRCh37	DELETION	CSF3R (NM_000760) rearrangement: c.1286-39:CSF3R_chr1:g.39179138del	PRECISE		MANUAL_OK	3to5	-	2243658	NA	0	48	10	55
P-0039771-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39883192	42872655	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2539:TMPRSS2_c.39+64394:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2989463	NA	0	74	10	77
P-0039799-T01-IM6	SOMATIC	AGAP3	BRAF	7	7	140482317	150821389	Intron of BRAF(-):503bp after exon 10	Intron of AGAP3(+):416bp after exon 9	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) fusion: c.1221+416:AGAP3_c.1314+504:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGAP3:BRAF}	10339072	NA	0	75	10	74
P-0039811-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111883072	111913223	Intron of BCL2L11(+):1Kb after exon 2	Intron of BCL2L11(+):5Kb after exon 3	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+1356_c.498+5499del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	30151	NA	0	43	10	45
P-0039859-T01-IM6	SOMATIC	TOP1	TOP1	20	20	37815818	39750460	IGR: 27Kb before LOC339568(-)	Intron of TOP1(+):30bp after exon 19	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: c.2045+30:TOP1_chr20:g.37815818inv	PRECISE		MANUAL_OK	3to3	-	1934642	NA	0	2	8	2
P-0039926-T01-IM6	SOMATIC	SRC	LMX1A	20	1	36014560	165259752	Exon 5 of SRC(+)	Intron of LMX1A(-):41Kb before exon 4	GRCh37	TRANSLOCATION	SRC (NM_198291) - LMX1A (NM_001174069) rearrangement: t(1;20)(q23.3;q11.23)(chr1:g.165259752::chr20:g.36014560)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SRC:LMX1A}	0	NA	0	81	10	80
P-0039927-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157511152	157631138	Intron of ARID1B(+):19bp before exon 15	IGR: 79Kb before TMEM242(-)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.3690-20:ARID1B_chr6:g.157631138inv	PRECISE		MANUAL_OK	3to3	-	119986	NA	0	6	10	6
P-0039927-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44939154	44941963	Intron of KDM6A(+):558bp after exon 20	Exon 22 of KDM6A(+)	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.3144+558_c.3213dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2809	NA	0	63	10	65
P-0039977-T01-IM6	SOMATIC	PARP1	PARP1	1	1	58306322	226568822	5-UTR of DAB1(-):830Kb before coding start	Exon 9 of PARP1(-)	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: c.1247:PARP1_chr1:g.58306322inv	IMPPRECISE		MANUAL_OK	3to3	-	168262500	NA	0	27	0	27
P-0039978-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10601708	10602803	Intron of KEAP1(-):544bp after exon 3	Exon 3 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.775_c.1325+545del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1095	NA	0	136	10	328
P-0039980-T01-IM6	SOMATIC	NF1	NF1	17	8	29528649	50391945	Intron of NF1(+):146bp after exon 11	IGR: 407Kb before C8orf22(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(8;17)(q11.21;q11.2)(chr8:g.50391945::chr17:g.29528649)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	6	6
P-0029159-T03-IM6	SOMATIC	ROS1	ROS1	6	6	83178662	117646132	IGR: 105Kb before TPBG(+)	Intron of ROS1(-):554bp before exon 34	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5558-554:ROS1_chr6:g.83178662del	PRECISE		MANUAL_OK	3to5	-	34467470	NA	0	45	10	45
P-0029159-T03-IM6	SOMATIC	EGFR	EGFR	7	7	55094663	55223164	Intron of EGFR(+):8Kb after exon 1	Intron of EGFR(+):358bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+7605_c.890-359del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	128501	NA	0	30	10	30
P-0032019-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241225	55269419	Intron of EGFR(+):388bp before exon 18	Intron of EGFR(+):8bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-389_c.3115-9dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28194	NA	0	216	10	244
P-0032061-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241243	55269327	Intron of EGFR(+):370bp before exon 18	Intron of EGFR(+):100bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-371_c.3115-101dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28084	NA	0	255	10	267
P-0000036-T01-IM3	SOMATIC	ROS1	SLC34A2	6	4	117662374	25667150	Exon 30 of ROS1(-)	Intron of SLC34A2(+): 600bp before exon 5	GRCh37	TRANSLOCATION		FFPE-PooledNormal_bc		AUTO_OK	5to3	Antisense fusion	0	NA	0	6	17	0
P-0000232-T01-IM3	SOMATIC	EWSR1	FLI1	22	11	29684914	128663002	Intron of EWSR1(+): 139bp after exon 7	Intron of FLI1(+): 11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_005243) - FLI1 (NM_002017) Translocation  t(22;11)(q12.2;q24.3)(c.974+139_c.655+11084)	PRECISE		AUTO_OK	5to3	Protein fusion: out of frame (FLI1-EWSR1)	0	NA	0	18	29	19
P-0001338-T01-IM3	SOMATIC	DHX35	TOP1	20	20	37658302	39726899	Intron of DHX35(+): 1Kb before exon 20	Exon 11 of TOP1(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (DHX35-TOP1)	2068597	NA	0	89	89	94
P-0001340-T01-IM3	SOMATIC	FGFR2	FGFR2	10	10	123322745	123325207	Intron of FGFR2(-): 1Kb after exon 3	Exon 3 of FGFR2(-)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Duplication within transcript: mid-exon	2462	NA	0	6	11	6
P-0001340-T01-IM3	SOMATIC	FOXP1	FOXP1	3	3	71051670	71064861	Intron of FOXP1(-): 1Kb before exon 13	Intron of FOXP1(-): 57bp before exon 12	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 1 exon: in frame	13191	NA	0	15	31	16
P-0001697-T02-IM3	SOMATIC	ERG	TMPRSS2	21	21	39856489	42872306	Intron of ERG(-): 14Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3015817	NA	0	14	15	15
P-0001724-T01-IM3	SOMATIC	RECQL4	MYT1	20	8	62827327	145737762	5-UTR of MYT1(+): 3Kb before coding start	Intron of RECQL4(-): 13bp after exon 17	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) - MYT1 (NM_004535) Translocation :   t(8;20)(q24.3;q13.33)(chr20:c.3055+13::chr8:c.1-2888)	PRECISE		AUTO_OK	5to5	Transcript fusion (RECQL4-MYT1)	0	NA	0	11	29	11
P-0002037-T01-IM3	SOMATIC	RB1	RB1	13	13	48886817	48919121	Intron of RB1(+): 5Kb after exon 2	Intron of RB1(+): 95bp before exon 4	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion of 1 exon: out of frame	32304	NA	0	11	18	13
P-0002039-T01-IM3	SOMATIC	FGFR2	RASAL2	10	1	123242028	178257418	Intron of FGFR2(-): 337bp before exon 17	Intron of RASAL2(+): 5Kb after exon 2	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	5to5	Protein fusion: in frame (FGFR2-RASAL2)	0	NA	0	4	13	4
P-0002039-T01-IM3	SOMATIC	FGFR2	TACC2	10	10	123242130	123885852	Intron of FGFR2(-): 439bp before exon 17	Intron of TACC2(+): 6Kb before exon 6	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (TACC2-FGFR2)	643722	NA	0	8	11	8
P-0002130-T02-IM3	SOMATIC	EWSR1	CREB3L1	22	11	29694734	46333373	Exon 13 of EWSR1(+)	Intron of CREB3L1(+): 503bp before exon 6	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EWSR1-CREB3L1)	0	NA	0	20	47	0
P-0002174-T01-IM3	SOMATIC	CDK12	GRB7	17	17	37650768	37894347	Intron of CDK12(+): 9bp before exon 5	5-UTR of GRB7(+): 4Kb before coding start	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Transcript fusion (GRB7-CDK12)	243579	NA	0	43	61	53
P-0002398-T02-IM3	SOMATIC	TMPRSS2	ETV1	21	7	42867877	13988492	Intron of TMPRSS2(-): 1Kb before exon 3	Intron of ETV1(-): 10Kb before exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (TMPRSS2-ETV1)	0	NA	0	24	28	0
P-0002402-T01-IM3	SOMATIC	NCOR1	MPRIP	17	17	15943004	16906001	Intron of NCOR1(-): 36bp before exon 44	IGR: 40Kb before MPRIP(+)	GRCh37	INVERSION		PRECISE		AUTO_OK	3to3	-	962997	NA	0	16	35	15
P-0002407-T01-IM3	SOMATIC	ATR	ATR	3	3	142285020	142301931	Exon 3 of ATR(-)	IGR: 4Kb after ATR(-)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	-	16911	NA	0	22	45	25
P-0002408-T01-IM3	SOMATIC	EML4	EML4	2	2	29448053	42544452	Intron of ALK(-): 274bp after exon 19	Intron of EML4(+): 115bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) and ALK (NM_004304) inversion (13096399bp) :  EML4:c.2057-115_ALK:c.3172+274inv	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (EML4-ALK)	13096399	NA	0	37	54	36
P-0002469-T01-IM3	SOMATIC	ATR	ATR	3	3	142266893	142272696	Intron of ATR(-): 141bp before exon 16	Exon 11 of ATR(-)	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	5803	NA	0	24	41	23
P-0002488-T01-IM3	SOMATIC	SMAD4	SMAD4	18	18	48604772	48606495	Exon 12 of SMAD4(+)	3-UTR of SMAD4(+): 2Kb after coding stop	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	1723	NA	0	71	99	122
P-0002495-T01-IM3	SOMATIC	RNF43	RNF43	17	17	56440669	56462615	Exon 5 of RNF43(-)	Intron of RNF43(-): 14Kb before exon 3	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	21946	NA	0	8	16	9
P-0002497-T01-IM3	SOMATIC	C6orf97	ESR1	6	6	151868329	152129362	Intron of C6orf97(+): 1Kb before exon 5	Exon 3 of ESR1(+)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ESR1-C6orf97)	261033	NA	0	61	77	68
P-0002499-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44855594	44922686	Intron of KDM6A(+):15Kb before exon 5	Exon 16 of KDM6A(+)	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.385-14612_c.1547dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	67092	NA	0	3	7	4
P-0002516-T01-IM3	SOMATIC	ERG	TMPRSS2	21	21	39877889	42874960	Intron of ERG(-): 60Kb before exon 4	Intron of TMPRSS2(-): 5Kb before exon 2	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	2997071	NA	0	9	22	9
P-0002516-T01-IM3	SOMATIC	BRAF	VIPR2	7	7	140454067	158918228	Intron of BRAF(-): 34bp before exon 14	Intron of VIPR2(-): 16Kb before exon 3	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	-	18464161	NA	0	40	77	39
P-0002526-T01-IM3	SOMATIC	GNA11	GNA11	19	19	3115025	3122151	Exon 4 of GNA11(+)	IGR: 699bp after GNA11(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	7126	NA	0	5	12	4
P-0002603-T02-IM6	SOMATIC	KMT2D	KMT2D	12	12	49445371	49448467	Exon 10 of KMT2D(-)	Exon 3 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.244_c.2095inv	PRECISE		MANUAL_OK	3to3	-	3096	NA	0	2	6	1
P-0002622-T02-IM5	SOMATIC	ERBB2	ERBB2	17	17	37873794	37879056	Intron of ERBB2(+): 61bp after exon 15	Intron of ERBB2(+): 516bp before exon 17	GRCh37	DELETION	ERBB2 (NM_004448) Rearrangement: c.1898+61_c.1947-516del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	5262	NA	0	10	10	8
P-0002641-T01-IM3	SOMATIC	PTPRS	JAK3	19	19	5361328	17946720	IGR: 21Kb after PTPRS(-)	Intron of JAK3(-): 13bp after exon 14	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	-	12585392	NA	0	55	62	54
P-0002877-T01-IM3	SOMATIC	ROS1	CD74	6	5	117645870	149782435	Intron of ROS1(-): 292bp before exon 34	Intron of CD74(-): 247bp before exon 7	GRCh37	TRANSLOCATION		IMPRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	3	0	6
P-0002901-T03-IM5	SOMATIC	c.40	48787	21	21	39866331	42869047	Intron of ERG(-): 4Kb after exon 1	Intron of TMPRSS2(-): 999bp after exon 2	GRCh37	DELETION	c.40-48787:ERG_c.126+999:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3002716	NA	0	21	56	38
P-0002901-T03-IM5	SOMATIC	NR3C2	TMPRSS2  fusion	21	4	42869155	149213311	Intron of TMPRSS2(-): 891bp after exon 2	Intron of NR3C2(-): 32Kb before exon 3	GRCh37	TRANSLOCATION	NR3C2 -TMPRSS2  fusion : t(4;21 (q22.3;q31.23 (chr4:g.149213311::chr21:g.42869155)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (NR3C2-TMPRSS2)	0	NA	0	14	33	0
P-0002912-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646326	149783419	Intron of ROS1(-): 748bp before exon 34	Intron of CD74(-): 544bp before exon 7	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ROS1-CD74)	0	NA	0	4	10	17
P-0002978-T02-IM5	SOMATIC	NTRK3	ETV6	15	12	88506571	12028576	Intron of NTRK3(-): 23Kb before exon 14	Intron of ETV6(+): 6Kb after exon 5	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	72	63	100
P-0002990-T04-IM6	SOMATIC	TMPRSS2	ERG	21	21	39880577	42869168	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):877bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 with ERG exon4) : c.126+878:TMPRSS2_c.40-63033:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2988591	NA	0	110	10	117
P-0003102-T01-IM5	SOMATIC	AXL	PSG5	19	19	41745254	43624654	Intron of AXL(+): 35bp after exon 9	IGR: 47Kb before PSG5(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	1879400	NA	0	11	12	6
P-0003109-T01-IM5	SOMATIC	HGF	HGF	7	7	81334952	81401503	Intron of HGF(-): 11bp after exon 16	Promoter of HGF(-): 2Kb from tx start	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication within transcript	66551	NA	0	10	28	16
P-0003290-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29684676	128641490	Exon 7 of EWSR1(+)	Intron of FLI1(+): 1Kb before exon 4	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EWSR1-FLI1)	0	NA	0	13	24	0
P-0003455-T02-IM5	SOMATIC	C19orf26	STK11	19	19	1223076	1236095	Exon 8 of STK11(+)	5-UTR of C19orf26(-): 14bp before coding start	GRCh37	INVERSION	C19orf26 (NM_152769) - STK11 (NM_000455) rearrangement: c.5:C19orf26_c.1013:STK11inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (C19orf26-STK11)	13019	NA	0	10	15	10
P-0003521-T02-IM5	SOMATIC	BARD1	BARD1	2	2	215611403	215645720	Intron of BARD1(-): 825bp before exon 8	Exon 4 of BARD1(-)	GRCh37	INVERSION	BARD1 (NM_000465) rearrangement: c.878_c.1678-825:BARD1inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	34317	NA	0	8	11	8
P-0003521-T02-IM5	SOMATIC	FOXP1	FOXP1	3	3	71101765	71123380	Exon 9 of FOXP1(-)	Intron of FOXP1(-): 20Kb before exon 8	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.283-20456_c.433:FOXP1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	21615	NA	0	13	20	13
P-0003929-T01-IM3	SOMATIC	MLL3	MLL3	7	3	151873709	190514063	Exon 38 of MLL3(-)	IGR: 56Kb before LOC647309(-)	GRCh37	TRANSLOCATION	MLL3 (NM_170606) Translocation: t(7;3)(q36.1;q28)(g.151873709_g.190514063)	PRECISE		AUTO_OK	5to5	-	0	NA	0	15	31	15
P-0003929-T01-IM3	SOMATIC	MCPH1	MLL3	8	7	6282834	151873698	Intron of MCPH1(+): 6Kb before exon 4	Exon 38 of MLL3(-)	GRCh37	TRANSLOCATION	MCPH1 (NM_001172574) - MLL3 (NM_170606) Translocation: t(8;7)(p23.1;q36.1)(c.234-6186_c.8840)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (MCPH1-MLL3)	0	NA	0	15	22	15
P-0003948-T01-IM3	SOMATIC	TP53	TP53	17	17	7576610	48892577	Intron of TP53(-): 26bp before exon 6	IGR: 20Kb before WFIKKN2(+)	GRCh37	INVERSION	TP53 (NM_000546) Inversion: c.993+243_g.48892577inv	PRECISE		MANUAL_OK	3to3	-	41315967	NA	0	43	77	43
P-0004454-T01-IM5	SOMATIC	TSC2	TSC2	16	16	2088970	2127535	3-UTR of SLC9A3R2(+): 985bp after coding stop	Intron of TSC2(+): 64bp before exon 26	GRCh37	DELETION	TSC2 (NM_000548) rearrangement : chr16:g.2088970_c.2838-64:TSC2del	PRECISE		MANUAL_OK	3to5	-	38565	NA	0	8	8	8
P-0005119-T02-IM5	SOMATIC	EWSR1	ETV4	22	17	29683311	41607152	Intron of EWSR1(+): 188bp after exon 6	Intron of ETV4(-): 100bp after exon 10	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ETV4 (NM_001986) fusion: t(22;17)(q12.2;q21.31)(chr22:g.29683311::chr17:g.41607152)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EWSR1-ETV4)	0	NA	0	6	7	6
P-0005121-T02-IM5	SOMATIC	ILVBL	NOTCH3	19	19	15235837	15292022	Exon 2 of ILVBL(-)	Intron of NOTCH3(-): 49bp before exon 18	GRCh37	DUPLICATION	ILVBL (NM_006844) - NOTCH3 (NM_000435) rearrangement : c.34:ILBL_c.2793-49:NOTCH3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ILVBL-NOTCH3)	56185	NA	0	42	35	42
P-0005121-T02-IM5	SOMATIC	KIAA1549	BRAF	7	7	138550267	140491248	Intron of KIAA1549(-): 2Kb after exon 15	Intron of BRAF(-): 3Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion (KIAA1549 exons 1-15 with BRAF exons 9-18): c.4929+2454:KIAA1549_c.1140+2860:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1940981	NA	0	62	57	58
P-0005152-T01-IM5	SOMATIC	SOX17	XKR4	8	8	55371023	56152192	Intron of SOX17(+): 18bp after exon 1	Intron of XKR4(+): 118Kb before exon 2	GRCh37	DELETION	SOX17 (NM_022454) - XKR4 (NM_052898) Rearrangement: c.307+18:SOX17_c.807-118046:XKR4del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SOX17-XKR4)	781169	NA	0	8	14	8
P-0005240-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55216890	55221971	Intron of EGFR(+): 2Kb before exon 5	Intron of EGFR(+): 126bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) Rearrangement :  c.560-2097_889+126del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	5081	NA	0	36	46	35
P-0005461-T02-IM5	SOMATIC	CDK5RAP2	BRAF	9	7	123255452	140481684	Intron of CDK5RAP2(-): 2Kb before exon 13	Intron of BRAF(-): 191bp before exon 11	GRCh37	TRANSLOCATION	CDK5RAP2 (NM_018249) - BRAF (NM_004333) rearrangement : t(7;9)(7q34;9q33.2)(chr7:140481684::chr9:123255452)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (CDK5RAP2-BRAF)	0	NA	0	19	0	19
P-0005530-T02-IM5	SOMATIC	SYNRG	CDK12	17	17	35959449	37671800	Intron of SYNRG(-): 961bp after exon 2	Intron of CDK12(+): 184bp before exon 9	GRCh37	INVERSION	SYNRG (NM_007247) - CDK12 (NM_016507) rearrangement : c.118+961:SYNRG_c.2769-184:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (SYNRG-CDK12)	1712351	NA	0	34	24	24
P-0005573-T01-IM5	SOMATIC	KIF5B	RET	10	10	32312824	43610418	Intron of KIF5B(-): 860bp before exon 16	Intron of RET(+): 234bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975)  Fusion (KIF5B exon15 fused with RET exon12): c.1726-860:KIF5B_c.2136+234:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (KIF5B-RET)	11297594	NA	0	47	94	46
P-0005583-T01-IM5	SOMATIC	BIRC3	SIK3	11	11	102201807	116784345	Exon 7 of BIRC3(+)	Intron of SIK3(-): 14Kb after exon 4	GRCh37	DELETION	BIRC3 (NM_182962) - SIK3 (NM_025164) rearrangement: c.1159:BIRC3_ c.442+13590:SIK3del	PRECISE		MANUAL_OK	3to5	Antisense fusion	14582538	NA	0	64	84	63
P-0005743-T02-IM5	SOMATIC	EML4	ALK	2	2	29447669	42553113	Intron of ALK(-): 658bp after exon 19	Intron of EML4(+): 181bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 with ALK exons 20-29) : c.2243-181:EML4_c.3172+658:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13105444	NA	0	23	44	23
P-0005768-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	40023500	42871297	5-UTR of ERG(-): 76Kb before coding start	Intron of TMPRSS2(-): 1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 fused to ERG exons 3-11) : c.56-1181:TMPRSS2_c.-150+10082:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript fusion (TMPRSS2-ERG)	2847797	NA	0	36	73	36
P-0005868-T02-IM5	SOMATIC	IRS1	IRS1	9	2	24948307	227663341	IGR: 728Kb before TUSC1(-)	Exon 1 of IRS1(-)	GRCh37	TRANSLOCATION	IRS1 (NM_005544) rearrangement : t(2;9)(2q36.3;9p21.3)(chr2:g.227663341::chr9:24948307)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	10	6
P-0006023-T02-IM5	SOMATIC	SOX9	SOX9	17	17	70119010	70121927	Exon 2 of SOX9(+)	3-UTR of SOX9(+): 1Kb after coding stop	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: c.582_c.*1399del	PRECISE		MANUAL_OK	3to5	-	2917	NA	0	41	66	41
P-0006112-T02-IM5	SOMATIC	GNA11	GNA11	19	19	3114971	4560347	Exon 4 of GNA11(+)	Promoter of SEMA6B(-): 2Kb from tx start	GRCh37	DELETION	GNA11 (NM_002067) rearrangement: c.506:GNA11_chr19:g.4560347del	PRECISE		MANUAL_OK	3to5	Antisense fusion	1445376	NA	0	20	43	19
P-0006646-T01-IM5	SOMATIC	RAB11FIP1	FGFR1	8	8	37730293	38275956	Exon 4 of RAB11FIP1(-)	Intron of FGFR1(-): 65bp before exon 9	GRCh37	DUPLICATION	RAB11FIP1 (NM_001002814) - FGFR1 (NM_001174067) rearrangement : c.2027:RAB11FIP1_c.1378-65:FGFR1dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (RAB11FIP1-FGFR1)	545663	NA	0	12	22	12
P-0006681-T01-IM5	SOMATIC	APC	APC	5	5	112172048	112173268	Intron of APC(+): 1Kb after exon 15	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement : c.1958+1186_977del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1220	NA	0	33	57	33
P-0007078-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	39838457	42875091	Intron of ERG(-): 21Kb before exon 4	Intron of TMPRSS2(-): 5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2 to 10): c.55+4786G_c.19-20913del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3036634	NA	0	33	62	33
P-0007397-T01-IM5	SOMATIC	NF2	NF2	22	22	30067919	49718815	Exon 11 of NF2(+)	IGR: 294Kb before C22orf34(-)	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.1104_chr22:g.49718815inv	PRECISE		MANUAL_OK	5to5	-	19650896	NA	0	12	18	11
P-0007664-T01-IM5	SOMATIC	SMAD2	SMAD2	18	18	45380596	45395526	Intron of SMAD2(-): 3Kb before exon 7	Intron of SMAD2(-): 88bp after exon 4	GRCh37	DELETION	SMAD2 (NM_001003652) rearrangement: c.520+88_c.731-2898del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons: in frame	14930	NA	0	18	28	18
P-0007664-T01-IM5	SOMATIC	SMAD2	SMAD2	18	18	45395717	45397285	Exon 4 of SMAD2(-)	Intron of SMAD2(-): 350bp before exon 3	GRCh37	DELETION	SMAD2 (NM_001003652) rearrangement: c.237-350_c.417del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1568	NA	0	41	51	41
P-0007669-T01-IM5	SOMATIC	AKAP11	FH	13	1	42830622	241661295	IGR: 16Kb before AKAP11(+)	Intron of FH(-): 25bp before exon 10	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241661295::chr13:g.42830622 )	IMPRECISE		MANUAL_OK	3to3	-	0	NA	0	93	0	63
P-0007669-T01-IM5	SOMATIC	COL1A2	FH	7	1	94032373	241661124	Intron of COL1A2(+): 1Kb after exon 6	3-UTR of FH(-): 4bp after coding stop	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;7(q43;q22.31)(chr1:g.241661124::chr7:g.94032373  )	PRECISE		MANUAL_OK	5to5	-	0	NA	0	77	51	75
P-0007739-T01-IM5	SOMATIC	LMNA	NTRK1	1	1	156106774	156845035	Exon 8 of LMNA(+)	Intron of NTRK1(+): 235bp after exon 11	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) Fusion (LMNA exons 1-8 fused to NTRK1 exons 12-17):  c.1443:LMNA_c.1354+235:NTRK1	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LMNA-NTRK1)	738261	NA	0	6	47	6
P-0007883-T01-IM5	SOMATIC	FOXP1	FOXP1	3	3	71021303	71594017	Intron of FOXP1(-): 403bp after exon 18	5-UTR of FOXP1(-): 346Kb before coding start	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement : chr3:g.71594017_c.1652+403:FOXP1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	572714	NA	0	30	53	30
P-0008308-T01-IM5	SOMATIC	BARD1	BARD1	2	2	215657130	215687909	Exon 3 of BARD1(-)	IGR: 13Kb after BARD1(-)	GRCh37	DELETION	BARD1 (NM_000465) rearrangement: chr2:g.215687909_c.255del	PRECISE		MANUAL_OK	3to5	-	30779	NA	0	15	20	15
P-0008488-T02-IM5	SOMATIC	IP6K1	MST1R	3	3	49803676	49934996	5-UTR of IP6K1(-): 18Kb before coding start	Exon 6 of MST1R(-)	GRCh37	DUPLICATION	IP6K1 (NM_153273) - MST1R (NM_002447) rearrangement: c.-128-18075:IP6K1_c.2003:MST1Rdup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (IP6K1-MST1R)	131320	NA	0	18	19	18
P-0008536-T02-IM5	SOMATIC	RNF43	RNF43	17	17	56437566	56440402	Exon 8 of RNF43(-)	Intron of RNF43(-): 234bp after exon 5	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.582+234_c.896del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2836	NA	0	21	33	21
P-0008769-T02-IM5	SOMATIC	TMPRSS2	ERG	21	21	39852370	42872367	Intron of ERG(-): 18Kb after exon 1	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon1 with ERG exons 4-11) : c.56-2251:TMPRSS2_c.40-34826:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3019997	NA	0	47	41	43
P-0009324-T02-IM5	SOMATIC	ETV6	ETV6	12	12	12020958	12149453	Intron of ETV6(+): 1Kb before exon 5	IGR: 74Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) Rearrangement :  c.464-1400_chr12:g.12149453del	PRECISE		MANUAL_OK	3to5	-	128495	NA	0	42	91	42
P-0009402-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27029058	27106373	Intron of ARID1A(+):5Kb after exon 1	Exon 20 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1137+5027_c.5984dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	77315	NA	0	43	10	43
P-0009741-T01-IM5	SOMATIC	APC	APC	5	5	112175874	112177321	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4583_c.6030del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1447	NA	0	17	27	17
P-0014014-T01-IM5	SOMATIC	EPHA5	EPHA5	4	4	66526241	66535289	Intron of EPHA5(-): 9Kb after exon 1	Exon 1 of EPHA5(-)	GRCh37	INVERSION	EPHA5 (NM_004439) rearrangement: c.181+9039_c.172inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	9048	NA	0	14	39	14
P-0014701-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	15	42843749	80623247	Exon 10 of TMPRSS2(-)	3-UTR of LINC00927(-):11Kb after coding stop	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement: t(15,21)(q25.1,q22.3)(chr15:g.15::80623247::chr21:g.42843749)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	162	10	167
P-0014701-T02-IM6	SOMATIC	ERG	ERG	21	21	37828386	39870413	IGR: 5Kb before CLDN14(-)	5-UTR of ERG(-):115Kb before coding start	GRCh37	INVERSION	ERG (NM_182918) Rearrangement : chr21:g.37828386_c.-109:ERGinv	PRECISE		MANUAL_OK	3to3	-	2042027	NA	0	64	10	63
P-0020632-T03-IM6	SOMATIC	BRCA1	METTL25	17	12	41234511	82861393	Exon 12 of BRCA1(-)	Intron of METTL25(+):9Kb before exon 10	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) - METTL25 (NM_032230) rearrangement: t(12;17)(q21.31;q21.31)(chr12:g.82861393::chr17:g.41234512)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRCA1:METTL25}	0	NA	0	28	0	28
P-0020632-T03-IM6	SOMATIC	BRCA1	BRCA1	17	17	41219889	41234296	Intron of BRCA1(-):177bp before exon 16	Intron of BRCA1(-):124bp after exon 12	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.4357+125_c.4987-177del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	14407	NA	0	28	10	31
P-0020632-T03-IM6	SOMATIC	ROS1	ROS1	6	6	117659918	160091465	Intron of ROS1(-):1Kb before exon 31	IGR: 9Kb before SOD2(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: chr6:g.160091465_c.5080-1415:ROS1inv	PRECISE		MANUAL_OK	3to3	-	42431547	NA	0	40	10	41
P-0020632-T03-IM6	SOMATIC	EGFR	EGFR	7	4	55241484	45780218	Intron of EGFR(+):129bp before exon 18	IGR: 258Kb before GABRG1(-)	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(4;7)(p12;p11.2)(chr4:g.45780218::chr7:g.55241484)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	10	23
P-0025284-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55227921	55500781	Exon 12 of EGFR(+)	3-UTR of LANCL2(+):67Kb after coding stop	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1388:EGFR_chr7:g.55500781del	IMPPRECISE		MANUAL_OK	3to5	-	272860	NA	0	9	0	9
P-0028070-T03-IM6	SOMATIC	KIT	KIT	17	4	30087021	55599168	IGR: 92Kb before COPRS(-)	Intron of KIT(+):67bp before exon 17	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(4;17)(p13.33;q11.2)(chr4:g.55599168::chr17:g.30087021)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	14
P-0028070-T03-IM6	SOMATIC	EWSR1	EWSR1	22	22	29684990	29722730	Intron of EWSR1(+):215bp after exon 9	Promoter of AP1B1(-):938bp from tx start	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.992+215:EWSR1_chr22:g.29722730dup	PRECISE		MANUAL_OK	5to3	-	37740	NA	0	252	10	261
P-0028935-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48575836	48625572	Intron of SMAD4(+):142bp after exon 4	IGR: 69Kb before SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.454+142_chr18:g.48625572del	IMPPRECISE		MANUAL_OK	3to5	-	49736	NA	0	5	0	6
P-0030001-T02-IM6	SOMATIC	FGF19	ORAOV1	11	11	69483088	69515809	Intron of ORAOV1(-):308bp before exon 4	Intron of FGF19(-):1Kb before exon 3	GRCh37	DELETION	FGF19 (NM_005117) - ORAOV1 (NM_153451) rearrangement: c.337-1465:FGF19_c.228-308:ORAOV1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGF19:ORAOV1}	32721	NA	0	8	10	8
P-0030342-T02-IM6	SOMATIC	UPF1	UPF1	19	17	18971697	37839590	Exon 17 of UPF1(+)	Intron of PGAP3(-):1Kb after exon 3	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(17;19)(q12;p13.11)(	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	29	10	29
P-0030874-T01-IM6	SOMATIC	KMT2A	TMPRSS4	11	11	117977915	118344051	Intron of TMPRSS4(+):588bp before exon 6	Exon 3 of KMT2A(+)	GRCh37	DUPLICATION	KMT2A (NM_001197104) - TMPRSS4 (NM_019894) rearrangement: c.2177:KMT2A_c.441-574:TMPRSS4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2A:TMPRSS4}	366136	NA	0	8	10	9
P-0033018-T03-IM6	SOMATIC	LETM2	WHSC1L1	8	8	38172365	38258686	Intron of WHSC1L1(-):74bp before exon 12	Intron of LETM2(+):115bp after exon 6	GRCh37	INVERSION	LETM2 (NM_001199659) - WHSC1L1 (NM_023034) rearrangement: c.843+115:LETM2_c.2116-74:WHSC1L1inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {LETM2:WHSC1L1}	86321	NA	0	5	0	6
P-0033599-T02-IM6	SOMATIC	ATM	ATM	11	11	107408948	108126825	Intron of ALKBH8(-):6Kb before exon 8	Intron of ATM(+):116bp before exon 14	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.2125-117:ATM_chr11:g.107408948del	PRECISE		MANUAL_OK	3to5	-	717877	NA	0	3	6	3
P-0033700-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315902	43611670	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):361bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1454:KIF5B_c.2137-362:RET	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295768	NA	0	104	10	125
P-0033700-T02-IM6	SOMATIC	JAK3	JAK3	19	19	10451444	17948168	Promoter of ICAM3(-):7Kb from tx start	Intron of JAK3(-):146bp before exon 13	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.1702-146:JAK3_chr19:g.10451444inv	PRECISE		MANUAL_OK	3to3	-	7496724	NA	0	19	10	19
P-0033700-T02-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185167807	185190035	Exon 6 of MAP3K13(+)	Intron of MAP3K13(+):727bp before exon 11	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.1130_c.1644-728del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22228	NA	0	38	10	61
P-0033921-T02-IM6	SOMATIC	ETV6	NTRK3	15	12	88516534	12031161	Intron of NTRK3(-):33Kb before exon 15	Intron of ETV6(+):6Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12031161::chr15:g.88516534)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	15	10	12
P-0034079-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887273	42872293	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2177:TMPRSS2_c.39+60313:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2985020	NA	0	10	10	12
P-0034080-T01-IM6	SOMATIC	NAB2	NAB2	14	12	82091713	57487448	Promoter of LINC01467(-):20Kb from tx start	Intron of NAB2(+):67bp after exon 6	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;14)(p13.2;q31.1)(chr12:g.57487448::chr14:g.82091713)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	16	0	16
P-0034112-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21966720	21971178	Promoter of CDKN2A(-):1Kb from tx start	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) Rearrangement : c.180_c.*1508del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4458	NA	0	6	10	6
P-0034144-T01-IM6	SOMATIC	FLCN	FLCN	17	17	14246021	17131222	Intron of HS3ST3B1(+):2Kb before exon 2	Exon 4 of FLCN(-)	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.230:FLCN_chr17:g.14246021del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2885201	NA	0	12	10	12
P-0034335-T01-IM6	SOMATIC	BRAF	BRAF	7	7	111275457	140493991	IGR: 91Kb before DOCK4(-)	Intron of BRAF(-):116bp after exon 8	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.1140+117:BRAF_chr7:g.111275457dup	PRECISE		MANUAL_OK	5to3	-	29218534	NA	0	16	10	16
P-0034357-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315493	43611187	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):844bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1863:KIF5B_c.2137-845:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295694	NA	0	90	10	99
P-0034357-T01-IM6	SOMATIC	RET	RET	20	10	456852	43611134	IGR: 6Kb before CSNK2A1(-)	Intron of RET(+):897bp before exon 12	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(10;20)(q11.21;p13)(chr10:g.43611134::chr20:g.456852)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	10	31
P-0034357-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	121672884	145742184	Intron of SNTB1(-):28Kb before exon 3	Intron of RECQL4(-):36bp before exon 5	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.355-36:RECQL4_chr8:g.121672884inv	PRECISE		MANUAL_OK	3to3	-	24069300	NA	0	21	10	19
P-0034373-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974684	25710229	Exon 1 of CDKN2A(-)	IGR: 34Kb before TUSC1(-)	GRCh37	INVERSION	CDKN2A (NM_000077) Rearrangement: c.143:CDKN2A_chr9:g.25710229del	PRECISE		MANUAL_OK	5to5	-	3735545	NA	0	16	10	19
P-0034383-T01-IM6	SOMATIC	PPM1D	BCAS3	17	17	58725492	59273011	Intron of PPM1D(+):49bp after exon 4	Intron of BCAS3(+):111Kb after exon 23	GRCh37	DELETION	PPM1D (NM_003620) - BCAS3 (NM_001099432) rearrangement: c.1017+49:PPM1D_c.2470+111086:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PPM1D:BCAS3}	547519	NA	0	11	10	11
P-0034425-T01-IM6	SOMATIC	NUP93	NUP93	16	16	54859823	56871530	IGR: 93Kb before CRNDE(-)	Exon 18 of NUP93(+)	GRCh37	DELETION	NUP93 (NM_014669 ) Rearrangement: c.1910:NUP93_chr16:g.54859823del	PRECISE		MANUAL_OK	3to5	-	2011707	NA	0	30	10	30
P-0034441-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8074383	8348413	Exon 4 of ERRFI1(-)	IGR: 30Kb before SLC45A1(+)	GRCh37	INVERSION	ERRFI1 (NM_018948) Rearrangement : c.276:ERRFI1_chr1:g.8348413inv	PRECISE		MANUAL_OK	5to5	-	274030	NA	0	8	10	8
P-0034441-T01-IM6	SOMATIC	EWSR1	EWSR1	22	20	29685243	51121822	Intron of EWSR1(+):468bp after exon 9	IGR: 116Kb before LINC01524(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) Rearrangement : t(20;22)(q13.1;q13.1)(chr20:g.51121822::chr22:g.29685243)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	427	10	570
P-0034441-T01-IM6	SOMATIC	RHOA	RHOA	3	3	49400032	49429959	Exon 4 of RHOA(-)	5-UTR of RHOA(-):32Kb before coding start	GRCh37	DELETION	RHOA (NM_001664) Rearrangement : c.-2-16935_c.305del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29927	NA	0	5	10	5
P-0034477-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135580250	135787635	IGR: 21Kb before AK8(-)	Intron of TSC1(-):33bp after exon 9	GRCh37	DELETION	TSC1 (NM_000368) Rearrangement :  chr9:g.135580250_c.913+34del	PRECISE		MANUAL_OK	3to5	-	207385	NA	0	73	10	75
P-0034518-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42872555	41636514	Intron of TMPRSS2(-):2Kb before exon 2	IGR: 31Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41636514::chr21:g.:42872555)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	200	10	212
P-0034538-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56432354	56455265	Intron of RNF43(-):7bp before exon 10	Intron of RNF43(-):7Kb before exon 3	GRCh37	INVERSION	RNF43 (NM_017763) Rearrangement : c.253-6871_c.2309-7inv	PRECISE		MANUAL_OK	3to3	-	22911	NA	0	66	10	66
P-0034538-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	13612196	44949049	Intron of EGFL6(+):758bp before exon 3	Exon 25 of KDM6A(+)	GRCh37	INVERSION	KDM6A (NM_021140) Rearrangement :c.3610:KDM6A_c.188-759:EGFL6inv	PRECISE		MANUAL_OK	5to5	-	31336853	NA	0	56	10	56
P-0034543-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11954645	12012077	Intron of ETV6(+):37Kb before exon 3	Intron of ETV6(+):6Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) Rearrangement : c.164-37429_c.463+5582dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	57432	NA	0	8	6	8
P-0034557-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99482463	99580663	Exon 18 of IGF1R(+)	IGR: 23Kb before LUNAR1(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.3331:IGF1R_chr15:g.99580663dup	PRECISE		MANUAL_OK	5to3	-	98200	NA	0	2	6	2
P-0034557-T01-IM6	SOMATIC	MPL	MPL	8	1	124117761	43803867	Intron of TBC1D31(+):57bp after exon 8	Exon 2 of MPL(+)	GRCh37	TRANSLOCATION	MPL (NM_005373) rearrangement: t(1;8)(p34.2;q24.13)(chr1:g.43803867::chr8:g.124117761)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	10	10
P-0034557-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69058525	141637481	Exon 34 of PREX2(+)	Intron of AGO2(-):8Kb after exon 1	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.4169:PREX2_chr8:g.141637481dup	PRECISE		MANUAL_OK	5to3	-	72578956	NA	0	57	10	58
P-0034586-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118284677	118352398	3-UTR of LOC100131626(-):5Kb after coding stop	Intron of KMT2A(+):31bp before exon 7	GRCh37	DELETION	KMT2A (NM_001197104) Rearrangement: c.3635-32:KMT2A_chr11:g.118284677del	PRECISE		MANUAL_OK	3to5	-	67721	NA	0	74	10	80
P-0034590-T01-IM6	SOMATIC	FGFR2	ST8SIA6	10	10	17392954	123242595	Intron of ST8SIA6(-):9Kb after exon 4	Intron of FGFR2(-):616bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - ST8SIA6(NM_001004470) rearrangement: c.2301+617:FGFR2_c.377+8559:ST8SIA6inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	105849641	NA	0	4	5	4
P-0034605-T01-IM6	SOMATIC	SUGP1	BRD4	19	19	15367031	19408092	Exon 9 of BRD4(-)	Exon 8 of SUGP1(-)	GRCh37	DELETION	SUGP1 (NM_172231) - BRD4 (NM_058243) rearrangement: c.949:SUGP1_c.1595:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUGP1:BRD4}	4041061	NA	0	16	10	16
P-0034605-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141486602	141551202	IGR: 35Kb before CHRAC1(+)	Intron of AGO2(-):60bp after exon 15	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.2034+61:AGO2_chr8:g.141486602del	PRECISE		MANUAL_OK	3to5	-	64600	NA	0	49	10	49
P-0034621-T01-IM6	SOMATIC	ABCC2	BRAF	10	7	101559038	140495500	Exon 8 of ABCC2(+)	Intron of BRAF(-):1Kb before exon 8	GRCh37	TRANSLOCATION	ABCC2 (NM_000392) - BRAF (NM_004333) rearrangement: t(7;10)(q34;24.2)(chr7:g.140495500::chr10:g.101559038)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ABCC2:BRAF}	0	NA	0	13	10	13
P-0034631-T01-IM6	SOMATIC	ARID2	SLC2A13	12	12	40417566	46231109	Intron of SLC2A13(-):5Kb after exon 3	Exon 9 of ARID2(+)	GRCh37	INVERSION	ARID2 (NM_152641) - SLC2A13 (NM_052885) rearrangement: c.1029:ARID2_c.925+4537:SLC2A13inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID2:SLC2A13}	5813543	NA	0	283	10	264
P-0034631-T01-IM6	SOMATIC	EGFL7	EGFL7	12	9	58414208	139565498	IGR: 79Kb before XRCC6BP1(+)	Intron of EGFL7(+):32bp after exon 7	GRCh37	TRANSLOCATION	EGFL7 (NM_201446) rearrangement: t(9;12)(q34.3;q14.1)(chr9:g.139565498::chr12:g.58414208)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	10	14
P-0034633-T01-IM6	SOMATIC	EGFR vIII	EGFR vIII	7	7	55130237	55222206	Intron of EGFR(+):43Kb after exon 1	Intron of EGFR(+):361bp after exon 7	GRCh37	DELETION	EGFR vIII (NM_005228) rearrangement: c.88+43179_c.889+361del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	91969	NA	0	26	0	603
P-0034642-T01-IM6	SOMATIC	DNMT1	DNMT1	19	1	10271012	152184933	Intron of DNMT1(-):47bp after exon 13	3-UTR of HRNR(-):618bp after coding stop	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(1;19)(q21.3;p13.2)(chr1:g.152184933::chr19:g.10271012)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	22
P-0034676-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37582786	38061813	Intron of SLC25A21(-):59Kb after exon 1	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	SLC25A21(NM_030631) -  FOXA1 (NM_004496) rearrangement: c.70+58700:SLC25A21_c.176:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	479027	NA	0	4	5	4
P-0034683-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68772243	68816731	Exon 2 of CDH1(+)	Intron of CDH1(+):19Kb before exon 3	GRCh37	DELETION	CDH1 (NM_004360) Rearrangement : c.92_c.164-18842del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	44488	NA	0	101	10	111
P-0034685-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27090894	27099347	Intron of ARID1A(+):1Kb after exon 8	Exon 14 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) Rearrangement : c.2732+1118_c.3584dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8453	NA	0	33	10	33
P-0034685-T01-IM6	SOMATIC	KCNMA1	ARID5B	10	10	63829403	78740695	Intron of ARID5B(+):55bp before exon 8	Intron of KCNMA1(-):11Kb before exon 20	GRCh37	INVERSION	KCNMA1 (NM_001161352) - ARID5B (NM_032199) Rearrangement : c.2267-10870:KCNMA1_c.1102-56:ARID5Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KCNMA1:ARID5B}	14911292	NA	0	104	10	113
P-0034685-T01-IM6	SOMATIC	ERBB3	ERBB3	12	9	56491485	140090176	Intron of ERBB3(+):83bp before exon 21	Intron of TPRN(-):3Kb before exon 2	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) Rearrangement :  t(9;12)(q34.3;q13.13)(chr9:g.140090176::chr12:g.56491485)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0034685-T01-IM6	SOMATIC	CREBBP	CREBBP	19	16	30941833	3843332	Intron of ZNF536(+):5Kb after exon 2	Intron of CREBBP(-):54bp after exon 4	GRCh37	TRANSLOCATION	CREBBP (NM_004380) Rearrangement: t(16;19)(p13.3;q12)(chr16:g.3843332::chr19:g.30941833)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	61	10	63
P-0034685-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11023541	11027453	Intron of CARM1(+):571bp after exon 5	Exon 8 of CARM1(+)	GRCh37	INVERSION	CARM1 (NM_199141) Rearrangement: c.669+571_c.1020inv	PRECISE		MANUAL_OK	5to5	-	3912	NA	0	9	10	11
P-0034686-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877430	42875062	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 with ERG exon1) : c.55+4815:TMPRSS2_c.40-59886:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997632	NA	0	29	10	30
P-0034694-T01-IM6	SOMATIC	APC	APC	5	5	20611790	112179293	IGR: 848Kb before GUSBP1(+)	Exon 16 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.8002:APC_chr5:g.20611790inv	PRECISE		MANUAL_OK	5to5	-	91567503	NA	0	9	10	9
P-0034700-T01-IM6	SOMATIC	EGFR	EGFR	7	4	55210965	31644949	Intron of EGFR(+):32bp before exon 3	IGR: 354Kb before LOC102723828(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(4;7)(p15.1;p11.2)(chr4:g.31644949::chr7:g.55210965)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	10	13
P-0034728-T01-IM6	SOMATIC	PIK3CB	PIK3CB	3	3	138456668	138458523	Exon 4 of PIK3CB(-)	Intron of PIK3CB(-):2Kb before exon 4	GRCh37	DELETION	PIK3CB (NM_006219) Rearrangement : c.682_c.622-1795del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1855	NA	0	12	10	12
P-0034728-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140487969	152973874	Intron of BRAF(-):585bp before exon 9	IGR: 123Kb before LINC01287(-)	GRCh37	DELETION	BRAF (NM_004333) Rearrangement : c.1141-585:BRAF_chr7:g.152973874del	PRECISE		MANUAL_OK	3to5	-	12485905	NA	0	3	8	3
P-0034754-T01-IM6	SOMATIC	SLX4	SLX4	16	11	3633254	118740619	Exon 14 of SLX4(-)	IGR: 14Kb before CXCR5(+)	GRCh37	TRANSLOCATION	SLX4 (NM_032444) rearrangement: t(11;16)(q23.2;p13.3)(chr11:g.118740619::chr16:g.3633254)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	79	10	106
P-0034754-T01-IM6	SOMATIC	PIEZO1	PBRM1	16	3	88829989	52682408	Intron of PIEZO1(-):14Kb before exon 2	Exon 8 of PBRM1(-)	GRCh37	TRANSLOCATION	PIEZO1 (NM_001142864) - PBRM1 (NM_018313) rearrangement: t(3;16)(p21.1;q24.3)(chr3:g.52682408::chr16:g.88829989)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIEZO1:PBRM1}	0	NA	0	29	10	29
P-0034779-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11180343	11187949	Intron of MTOR(-):959bp after exon 49	Intron of MTOR(-):86bp before exon 44	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.6034-86_c.6933+960del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	7606	NA	0	5	8	5
P-0034781-T01-IM6	SOMATIC	GRIPAP1	RET	X	10	48831008	43611853	Intron of GRIPAP1(-):311bp before exon 26	Intron of RET(+):178bp before exon 12	GRCh37	TRANSLOCATION	GRIPAP1 (NM_020137) - RET (NM_020975) rearrangement: t(X;10)(p11.23q11.21)(chrX:g.48831008::chr10:g.43611853)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {GRIPAP1:RET}	0	NA	0	29	10	31
P-0034783-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71050192	77000822	Exon 9 of FOXP1(-)	IGR: 88Kb before ROBO2(+)	GRCh37	DUPLICATION	FOXP1 (NM_001244814) rearrangement: c.993:FOXP1_chr3:g.77000822dup	IMPPRECISE		MANUAL_OK	5to3	-	5950630	NA	0	6	0	6
P-0034783-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	130007438	145738799	IGR: 221Kb before LINC00977(-)	Exon 14 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.2266:RECQL4_chr8:g.130007438inv	PRECISE		MANUAL_OK	5to5	-	15731361	NA	0	51	10	73
P-0034811-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151916746	152008811	Intron of KMT2C(-):861bp after exon 23	Intron of KMT2C(-):71bp after exon 5	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.739+72_c.3712+862del	PRECISE		MANUAL_OK	3to5	Deletion of 18 exons : in frame	92065	NA	0	26	10	28
P-0034812-T01-IM6	SOMATIC	BCL10	BCL10	1	1	85736595	151948134	Intron of BCL10(-):6bp before exon 2	IGR: 7Kb before S100A10(-)	GRCh37	DELETION	BCL10 (NM_003921) rearrangement: c.58-6:BCL10_chr1:g.151948134del	PRECISE		MANUAL_OK	3to5	-	66211539	NA	0	11	10	11
P-0034816-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78156523	78414734	IGR: 5Kb before USP33(-)	Intron of FUBP1(-):105bp after exon 19	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.1926+106:FUBP1_chr1:g.78156523del	PRECISE		MANUAL_OK	3to5	-	258211	NA	0	11	10	12
P-0034816-T01-IM6	SOMATIC	TSC2	TSC2	17	16	7043177	2133763	IGR: 34Kb before ASGR1(-)	Exon 33 of TSC2(+)	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(16;17)(p13.3;p13.1)(chr16:g.2133763::chr17:g.7043177)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0034816-T01-IM6	SOMATIC	ALK	ALK	2	2	28665721	29430131	IGR: 50Kb before FOSL2(+)	Exon 26 of ALK(-)	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.3844:ALK_chr2:g.28665721dup	PRECISE		MANUAL_OK	5to3	-	764410	NA	0	70	10	76
P-0034816-T01-IM6	SOMATIC	PBRM1	PBRM1	3	1	52668594	224289787	Intron of PBRM1(-):23bp after exon 12	IGR: 12Kb before FBXO28(+)	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(1;3)(q42.11;p21.1)(chr1:g.224289787::chr3:g.52668594)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	101	10	123
P-0034816-T01-IM6	SOMATIC	STK38	MDC1	6	6	30668282	36469657	Exon 15 of MDC1(-)	Intron of STK38(-):2Kb before exon 10	GRCh37	DELETION	STK38 (NM_007271) - MDC1 (NM_014641) rearrangement: c.835-1890:STK38_c.6230:MDC1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STK38:MDC1}	5801375	NA	0	50	10	50
P-0034818-T01-IM6	SOMATIC	GNA11	GNA11	19	6	3119247	122459052	Exon 6 of GNA11(+)	IGR: 262Kb before HSF2(+)	GRCh37	TRANSLOCATION	GNA11 (NM_002067) rearrangement: t(6;19)(q22.31;p13.3)(chr6:g.122459052::chr19:g.3119247)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	75	10	75
P-0034818-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139402788	140014051	Exon 20 of NOTCH1(-)	IGR: 9Kb before DPP7(-)	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.3221:NOTCH1_chr9:g.140014051dup	PRECISE		MANUAL_OK	5to3	-	611263	NA	0	2	4	2
P-0034877-T01-IM6	SOMATIC	SHOC2	TSC22D1	13	10	45064416	112769116	Intron of TSC22D1(-):56Kb before exon 2	Exon 7 of SHOC2(+)	GRCh37	TRANSLOCATION	SHOC2 (NM_007373) - TSC22D1 (NM_183422) rearrangement: t(10;13)(q25.2;q14.11)(chr10:g.112769116::chr13:g.45064416)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SHOC2:TSC22D1}	0	NA	0	46	10	46
P-0034900-T01-IM6	SOMATIC	HOOK3	RPS6KB2	11	8	67198652	42762715	Intron of RPS6KB2(+):186bp before exon 5	Intron of HOOK3(+):1Kb after exon 2	GRCh37	TRANSLOCATION	HOOK3 (NM_032410) - RPS6KB2 (NM_003952) rearrangement: t(8;11)(p11.21;q13.2)(chr8:g.42762715::chr11:g.67198652)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {HOOK3:RPS6KB2}	0	NA	0	20	10	20
P-0034901-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52406605	52436792	Intron of DNAH1(+):202bp after exon 43	Intron of BAP1(-):2bp after exon 15	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1983+3:BAP1_chr3:g.52406605del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	30187	NA	0	6	10	6
P-0034941-T01-IM6	SOMATIC	HIST1H2BD	HIST1H2BD	18	6	32333159	26158708	5-UTR of DTNA(+):3Kb before coding start	Exon 1 of HIST1H2BD(+)	GRCh37	TRANSLOCATION	HIST1H2BD (NM_021063) rearrangement: t(6;18)(p22.2;q12.1)(chr6:g.26158708::chr18:g.32333159)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	30	10	32
P-0034944-T01-IM6	SOMATIC	STAT3	STAT5A	17	17	40461471	40484229	Exon 19 of STAT5A(+)	Intron of STAT3(-):680bp before exon 11	GRCh37	INVERSION	STAT3 (NM_139276) - STAT5A (NM_003152) rearrangement: c.1050-680:STAT3_c.2191:STAT5Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {STAT3:STAT5A}	22758	NA	0	52	10	71
P-0038226-T01-IM6	SOMATIC	FGFR4	FGFR4	18	5	59313584	176517876	IGR: 102Kb before LINC01544(+)	Intron of FGFR4(+):50bp after exon 4	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) rearrangement: t(5;18)(q35.2;q21.33)(chr5:g.176517876::chr18:g.59313584)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	9	5
P-0039719-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	40713478	40774339	Exon 30 of PTPRT(-)	Intron of PTPRT(-):4Kb before exon 19	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.2740-3697_c.4037del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	60861	NA	0	5	0	5
P-0014808-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315592	43611056	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):872bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1765:KIF5B_c.2136+871:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295464	NA	0	207	10	252
P-0014808-T02-IM6	SOMATIC	RET	ERCC6	10	10	43611216	50725257	Intron of RET(+):815bp before exon 12	Intron of ERCC6(-):7Kb after exon 5	GRCh37	INVERSION	RET (NM_020975) - ERCC6 (NM_000124) rearrangement: c.2137-816:RET_c.1397+6822:ERCC6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RET:ERCC6}	7114041	NA	0	211	10	210
P-0017365-T04-IM6	SOMATIC	CCDC6	RET	10	10	43611464	61640379	Intron of RET(+):567bp before exon 12	Intron of CCDC6(-):26Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion (CCDC6 exon 1 fused to RET exons 12-20):  c.303+25501:CCDC6_c.2137-568:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18028915	NA	0	42	10	48
P-0017365-T04-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18540068	18552482	Intron of PIK3C2G(+):4Kb before exon 14	Intron of PIK3C2G(+):110bp before exon 15	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1873-3988_c.2004-111del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	12414	NA	0	11	10	11
P-0022198-T03-IM6	SOMATIC	KMT2A	KMT2A	11	11	114253339	118342426	Promoter of LOC101928940(-):22Kb from tx start	Exon 3 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.552:KMT2A_chr11:g.114253339inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LOC101928940:KMT2A}	4089087	NA	0	25	10	32
P-0023910-T08-IM6	SOMATIC	FAT1	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	20	6	23
P-0030371-T02-IM6	SOMATIC	NAB2	TMEM117	12	12	44337589	57485885	Intron of TMEM117(+):423bp before exon 3	Intron of NAB2(+):104bp after exon 2	GRCh37	DUPLICATION	NAB2 (NM_005967) - TMEM117 (NM_032256) rearrangement: c.957+104:NAB2_c.278-424:TMEM117dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NAB2:TMEM117}	13148296	NA	0	5	10	5
P-0032571-T04-IM6	SOMATIC	MED12	MED12	X	X	70340002	70343489	Exon 4 of MED12(+)	Exon 12 of MED12(+)	GRCh37	DUPLICATION	MED12 (NM_005120) rearrangement: c.535_c.1663dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3487	NA	0	14	10	14
P-0036379-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611418	61639380	Intron of RET(+):613bp before exon 12	Intron of CCDC6(-):26Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+26500:CCDC6_c.2137-614:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18027962	NA	0	109	10	128
P-0036400-T03-IM6	SOMATIC	SPECC1L	RET	22	10	24739056	43610353	Intron of SPECC1L(+):4Kb before exon 11	Intron of RET(+):169bp after exon 11	GRCh37	TRANSLOCATION	SPECC1L (NM_001145468) - RET (NM_020975) fusion (SPECC1L exons 1-9 fused to RET exons 12-20): t(10;22)(q11.21;q11.23)(chr10:g.43610353::chr22:g.24739056)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SPECC1L:RET}	0	NA	1	133	10	168
P-0036400-T04-IM6	SOMATIC	SPECC1L	RET	22	10	24739056	43610353	Intron of SPECC1L(+):4Kb before exon 11	Intron of RET(+):169bp after exon 11	GRCh37	TRANSLOCATION	SPECC1L (NM_001145468) - RET (NM_020975) fusion (SPECC1L exons 1-9 fused to RET exons 12-20): t(10;22)(q11.21;q11.23)(chr10:g.43610353::chr22:g.24739056)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SPECC1L:RET}	0	NA	1	88	10	113
P-0036637-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313695	43611965	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):66bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1726-1731:KIF5B_c.2137-67:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298270	NA	0	40	10	46
P-0036737-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315869	43612025	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):6bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1487:KIF5B_c.2137-7:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296156	NA	0	36	10	44
P-0036737-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	30803463	31389189	Intron of POFUT1(+):209bp after exon 3	Exon 19 of DNMT3B(+)	GRCh37	INVERSION	DNMT3B (NM_006892): Rearrangement: c.2102:DNMT3B_chr20:g.30803463inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	585726	NA	0	19	10	18
P-0037367-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316318	43611874	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):157bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1038:KIF5B_c.2137-158:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295556	NA	0	25	10	29
P-0037412-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610839	61624434	Intron of RET(+):655bp after exon 11	Intron of CCDC6(-):12Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-11974:CCDC6_c.2136+655:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18013595	NA	0	52	10	65
P-0037494-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316371	43611755	Intron of KIF5B(-):984bp after exon 15	Intron of RET(+):276bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) Fusion (KIF5B exon15 fused with RET exon12 ): c.1725+985:KIF5B_c.2137-277:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295384	NA	0	35	10	38
P-0037494-T01-IM6	SOMATIC	APC	SRP19	5	5	112173333	112195853	Exon 16 of APC(+)	Promoter of SRP19(+):1Kb from tx start	GRCh37	DELETION	APC (NM_000038) - SRP19 (NM_001204199) Rearrangement: c.2042:APC_c.-1221:SRP19del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	22520	NA	0	5	0	6
P-0037961-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611448	51584256	Intron of RET(+):583bp before exon 12	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) rearrangement: c.763-360:NCOA4_c.2137-584:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7972808	NA	0	30	10	35
P-0038053-T01-IM6	SOMATIC	CLIP1	RET	12	10	122825512	43611121	Exon 10 of CLIP1(-)	Intron of RET(+):910bp before exon 12	GRCh37	TRANSLOCATION	CLIP1 (NM_001247997) - RET (NM_020975) rearrangement: t(10;12)(q11.21;q24.31)(chr10:g.43611121::chr12:g.122825512)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CLIP1:RET}	0	NA	0	8	5	6
P-0038257-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610594	61614591	Intron of RET(+):410bp after exon 11	Intron of CCDC6(-):2Kb before exon 2	GRCh37	INVERSION	CCDC6(NM_005436 ) - RET (NM_020975.4) Fusion (CCDC6 exon1 fused with RET exon12):c.304-2131:CCDC6_c.2136+410:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18003997	NA	0	22	10	28
P-0038315-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611981	51584201	Intron of RET(+):50bp before exon 12	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.763-415:NCOA4_c.2137-51:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7972220	NA	0	96	10	106
P-0039166-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741368	1808883	Intron of TACC3(+):60bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2315:FGFR3_c.1942-61:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67515	NA	0	91	10	93
P-0039474-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311388	43610359	Intron of KIF5B(-):203bp before exon 17	Intron of RET(+):175bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-203:KIF5B_c.2136+175:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298971	NA	0	81	10	95
P-0039474-T02-IM6	SOMATIC	KIF5B	RET	10	10	32311388	43610359	Intron of KIF5B(-):203bp before exon 17	Intron of RET(+):175bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-203:KIF5B_c.2136+175:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298971	NA	0	142	10	159
P-0039474-T02-IM6	SOMATIC	DOT1L	DOT1L	19	19	2136851	2227591	Intron of AP3D1(-):158bp after exon 4	Intron of DOT1L(+):465bp after exon 27	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.4606+465:DOT1L_chr19:g.2136851del	PRECISE		MANUAL_OK	3to5	-	90740	NA	0	3	4	3
P-0039548-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610843	61621961	Intron of RET(+):659bp after exon 11	Intron of CCDC6(-):10Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-9501:CCDC6_c.2136+659:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18011118	NA	0	63	10	79
P-0039881-T01-IM6	SOMATIC	MRE11A	MRE11A	11	11	94203784	94204939	Exon 9 of MRE11A(-)	Intron of MRE11A(-):14bp before exon 8	GRCh37	INVERSION	MRE11A (NM_005591) rearrangement: c.660-14_c.870inv	PRECISE		MANUAL_OK	3to3	-	1155	NA	0	2	7	1
P-0039881-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42874706	43413131	Intron of TMPRSS2(-):5Kb before exon 2	Exon 3 of ZBTB21(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4590:TMPRSS2_chr21:g.43413131del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZBTB21:TMPRSS2}	538425	NA	0	14	10	29
P-0039883-T01-IM6	SOMATIC	ATM	ATM	11	11	108172412	108173223	Exon 35 of ATM(+)	Intron of ATM(+):356bp before exon 36	GRCh37	DUPLICATION	ATM (NM_000051) rearrangement: c.5215_c.5320-357dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	811	NA	0	2	5	2
P-0039972-T01-IM6	SOMATIC	TRAF7	TRAF7	16	7	2225832	1067113	Intron of TRAF7(+):2bp before exon 18	Intron of C7orf50(-):17Kb before exon 3	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(7;16)(p22.3;p13.3)(chr7:g.1067113::chr16:g.2225832)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	122	0	125
P-0040077-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120471915	222057559	Intron of NOTCH2(-):80bp before exon 23	IGR: 57Kb before LOC101929771(-)	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.3656-80:NOTCH2_chr1:g.222057559del	PRECISE		MANUAL_OK	3to5	-	101585644	NA	0	8	10	8
P-0040081-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	41905066	46266705	IGR: 181Kb before SRSF6(+)	Intron of NCOA3(+):178bp after exon 13	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.2512+178:NCOA3_chr20:g.41905066inv	PRECISE		MANUAL_OK	3to3	-	4361639	NA	0	14	10	13
P-0040082-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151879291	151899047	Exon 36 of KMT2C(-)	Intron of KMT2C(-):971bp after exon 26	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.4092+972_c.5654inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	19756	NA	0	17	10	18
P-0013114-T05-IM6	SOMATIC	VTCN1	VTCN1	6	1	169564182	117753437	IGR: 11Kb before LOC101929504(-)	Intron of VTCN1(-):8bp after exon 1	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;6)(p13.1;q27)(chr1:g.117753437::chr6:g.169564182)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	9
P-0028422-T02-IM6	SOMATIC	ZNF429	CARM1	19	19	11031639	21710373	Intron of CARM1(+):17bp after exon 13	Intron of ZNF429(+):2Kb before exon 2	GRCh37	DUPLICATION	ZNF429 (NM_001001415) - CARM1 (NM_199141) rearrangement: c.4-2087:ZNF429_c.1537+17:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ZNF429:CARM1}	10678734	NA	0	42	10	43
P-0028422-T02-IM6	SOMATIC	TOP1	TOP1	20	2	39741506	42941827	Exon 14 of TOP1(+)	Intron of MTA3(+):4Kb before exon 15	GRCh37	TRANSLOCATION	TOP1 (NM_003286) rearrangement: t(2;20)(p21;q12)(chr2:g.42941827::chr20:g.39741506)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TOP1:MTA3}	0	NA	0	100	10	102
P-0028422-T02-IM6	SOMATIC	EGFR	EGFR	20	7	55487269	55209851	IGR: 257Kb before BMP7(-)	Intron of EGFR(+):127bp before exon 2	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;20)(p11.2;q13.31)(chr7:g.55209851::chr20:g.55487269)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	16
P-0033927-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3779289	3847290	Exon 31 of CREBBP(-)	Intron of CREBBP(-):4Kb before exon 4	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.976-3663_c.5759del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	68001	NA	0	30	0	31
P-0039298-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89692820	89694424	Exon 5 of PTEN(+)	Intron of PTEN(+):1Kb after exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.304_c.492+1416del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1604	NA	0	22	10	36
P-0039994-T01-IM6	SOMATIC	FGFR1	FGFR1	8	6	38287323	42432840	Exon 4 of FGFR1(-)	IGR: 99Kb before UBR2(+)	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) rearrangement: t(6;8)(p21.1;p11.23)(chr6:g.42432840::chr8:g.38287323)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	13
P-0040019-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21951523	21971053	IGR: 16Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.348:CDKN2A_chr9:g.21951523del	PRECISE		MANUAL_OK	3to5	-	19530	NA	0	55	10	55
P-0040184-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202131345	202186808	Exon 2 of CASP8(+)	Intron of ALS2CR12(-):8Kb after exon 9	GRCh37	DELETION	CASP8 (NM_001080125) rearrangement: c.313:CASP8_chr2:g.202186808del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	55463	NA	0	9	10	13
P-0039579-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684257	128665386	Intron of EWSR1(+):337bp before exon 9	Intron of FLI1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) rearrangement: t(11;22)(q24.3;q12.2)(chr11:g.128665386::chr22:g.29684257)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	38	10	41
P-0040055-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16263688	16281610	Exon 12 of SPEN(+)	5-UTR of ZBTB17(-):13Kb before coding start	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.10057:SPEN_chr1:g.16281610del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	17922	NA	0	6	10	9
P-0040116-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89357761	89434071	Intron of ANKRD11(-):170bp before exon 5	5-UTR of ANKRD11(-):99Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.227-170:ANKRD11_chr16:g.89434071del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	76310	NA	0	2	10	3
P-0040116-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55224137	55232815	Intron of EGFR(+):88bp before exon 9	Intron of EGFR(+):157bp before exon 15	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.1007-89_c.1723-158dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	8678	NA	0	3	5	3
P-0040118-T01-IM6	SOMATIC	AKT2	AKT2	19	19	40756397	40761152	Intron of AKT2(-):5Kb after exon 4	Exon 4 of AKT2(-)	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.200_c.287+4668inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4755	NA	0	4	6	4
P-0040193-T01-IM6	SOMATIC	ALK	ALK	2	2	29448046	31931590	Intron of ALK(-):280bp after exon 19	IGR: 161Kb before MEMO1(-)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3172+281:ALK_chr2:g.31931590del	PRECISE		MANUAL_OK	3to5	-	2483544	NA	0	82	10	91
P-0040279-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55203358	55223501	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):21bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-6621_c.890-22del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20143	NA	0	135	0	811
P-0040338-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55225620	55239312	Intron of EGFR(+):174bp after exon 11	Intron of EGFR(+):406bp after exon 16	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1298+174_c.1919+406del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	13692	NA	0	16	10	14
P-0039718-T01-IM6	SOMATIC	RET	RET	10	10	43607561	43611509	Exon 8 of RET(+)	Intron of RET(+):522bp before exon 12	GRCh37	DELETION	RET (NM_020975) rearrangement: c.1537_c.2137-523del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3948	NA	0	38	10	38
P-0006603-T01-IM5	SOMATIC	SETD4	TMPRSS2	21	21	37428600	42869417	Intron of SETD4(-): 807bp after exon 3	Intron of TMPRSS2(-): 629bp after exon 2	GRCh37	DUPLICATION	SETD4 (NM_017438) - TMPRSS2 (NM_001135099) rearrangement: c.169+807:SETD4_c.126+629:TMPRSS2del	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (SETD4-TMPRSS2)	5440817	NA	0	78	62	74
P-0006603-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39820342	42869492	Intron of ERG(-): 3Kb before exon 4	Intron of TMPRSS2(-): 554bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 with ERG exons 4-10): c.126+554:TMPRSS2_c.40-2798:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	3049150	NA	0	96	64	87
P-0030482-T01-IM6	SOMATIC	RAB35	RAB35	12	2	120536768	21445639	Intron of RAB35(-):29bp before exon 5	IGR: 221Kb before APOB(-)	GRCh37	TRANSLOCATION	RAB35 (NM_006861) rearrangement: t(2;12)(p24.1;q24.23)(chr2:g.21445639::chr12:g.120536768)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	14
P-0030482-T01-IM6	SOMATIC	WT1	WT1	20	11	30195055	32450105	Promoter of ID1(+):2Kb from tx start	Exon 2 of WT1(-)	GRCh37	TRANSLOCATION	WT1 (NM_024426) rearrangement: t(11;20)(p13;q11.21)(chr11:g.32450105::chr20:g.30195055)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WT1:ID1}	0	NA	0	8	10	10
P-0032012-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32185048	58776688	Intron of NOTCH4(-):5bp before exon 10	IGR: 505Kb before GUSBP4(-)	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.1625-5:NOTCH4_chr6:g.58776688del	PRECISE		MANUAL_OK	3to5	-	26591640	NA	0	8	10	50
P-0032050-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9781840	10019018	Exon 16 of PIK3CD(+)	5-UTR of NMNAT1(+):13Kb before coding start	GRCh37	INVERSION	PIK3CD (NM_005026) rearrangement: c.1977:PIK3CD_chr1:g.10019018inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	237178	NA	0	55	10	54
P-0032068-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49432495	72507173	Exon 34 of KMT2D(-)	IGR: 140Kb before TRHDE-AS1(-)	GRCh37	INVERSION	KMT2D (NM_003482) Rearrangement: c.8644:KMT2D_chr12:g.72507173inv	PRECISE		MANUAL_OK	5to5	-	23074678	NA	0	12	10	13
P-0032152-T01-IM6	SOMATIC	FGFR2	KIAA1598	10	10	118710669	123241513	Intron of KIAA1598(-):750bp after exon 6	Intron of FGFR2(-):2Kb after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - KIAA1598 (NM_001127211) fusion: c.2301+1699:FGFR2_c.534+751:KIAA1598	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:KIAA1598}	4530844	NA	0	19	10	19
P-0032152-T01-IM6	SOMATIC	MGA	MGA	15	15	42050142	42229443	Intron of MGA(+):105bp after exon 19	Intron of EHD4(-):6Kb after exon 3	GRCh37	DELETION	MGA (NM_00116427) rearrangement: c.7191+105:MGA_chr15:g.42229443del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	179301	NA	0	35	10	34
P-0032152-T01-IM6	SOMATIC	DROSHA	DROSHA	16	5	34383454	31424707	IGR: 20Kb before UBE2MP1(-)	Intron of DROSHA(-):129bp before exon 27	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;16)(p13.3;p11.2)(chr5:g.31424707::chr16:g.34383454)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	40	10	40
P-0032154-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115120826	115122356	Exon 1 of TBX3(-)	Promoter of TBX3(-):14Kb from tx start	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.180:TBX3_chr12:g.115122356del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1530	NA	0	4	6	4
P-0032155-T01-IM6	SOMATIC	NRAS	NRAS	1	1	115252243	115255198	Exon 4 of NRAS(-)	Intron of NRAS(-):1Kb after exon 3	GRCh37	INVERSION	NRAS (NM_002524) rearrangement: c.290+1223_c.397inv	PRECISE		MANUAL_OK	3to3	-	2955	NA	0	7	10	7
P-0032187-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098939	178101232	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):2Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) Rearrangement:  c.106_c.46-2233del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2293	NA	0	40	10	45
P-0032187-T01-IM6	SOMATIC	CTNNB1	CTNNB1	5	3	20450107	41277838	5-UTR of CDH18(-):977Kb before coding start	Intron of CTNNB1(+):1bp before exon 12	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) Rearrangement: t(3;5)(p21.3;p14.3)(chr3:g.41277838::chr5:g.20450107)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	13	0	13
P-0032227-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315356	43611125	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):906bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2000:KIF5B_c.2137-907:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295769	NA	0	27	10	28
P-0032230-T01-IM6	SOMATIC	MSH6	MSH6	2	2	48018111	48090312	Exon 2 of MSH6(+)	Intron of FBXO11(-):23Kb before exon 2	GRCh37	DELETION	MSH6 (NM_000179) rearrangement: c.306:MSH6_chr2:g.48090312del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	72201	NA	0	24	10	25
P-0033711-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3830858	3840870	Exon 8 of CREBBP(-)	Intron of CREBBP(-):1Kb after exon 5	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.1330+1112_c.1698dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10012	NA	0	35	10	35
P-0033711-T01-IM6	SOMATIC	RTEL1	RTEL1	20	4	62325757	12679639	Exon 31 of RTEL1(+)	IGR: 455Kb before LOC101929019(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(4;20)(p15.33;q13.33)(chr4:g.12679639::chr20:g.62325757)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	9	10	9
P-0033711-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52612623	52613165	Intron of PBRM1(-):446bp after exon 22	Exon 22 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.3363_c.3458+447del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	542	NA	0	90	0	128
P-0033711-T01-IM6	SOMATIC	NSD1	CA1	8	5	86242108	176637902	Intron of CA1(-):35bp before exon 6	Exon 5 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) - CA1 (NM_001128831) rearrangement: t(5;8)(q35.3;q21.2)(chr5:g.176637902::chr8:g.86242108)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NSD1:CA1}	0	NA	0	52	10	51
P-0038428-T03-IM6	SOMATIC	DNMT1	MBD3	19	19	1591698	10260494	Intron of MBD3(-):822bp after exon 1	Intron of DNMT1(-):34bp after exon 24	GRCh37	DELETION	DNMT1 (NM_001379) - MBD3 (NM_001281454) rearrangement: c.2333+35:DNMT1_c.14+919:MBD3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNMT1:MBD3}	8668796	NA	0	36	10	36
P-0040143-T01-IM6	SOMATIC	CRTC3	BLM	15	15	91156016	91346825	Intron of CRTC3(+):2Kb before exon 7	Exon 18 of BLM(+)	GRCh37	DELETION	CRTC3 (NM_022769) - BLM (NM_000057) rearrangement: c.578-1669:CRTC3_c.3433:BLMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CRTC3:BLM}	190809	NA	0	44	10	44
P-0006837-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873621	42876179	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 1-10): c.55+3696:TMPRSS2_c.-3317:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3002558	NA	0	125	10	125
P-0006837-T03-IM6	SOMATIC	NLGN1	TMPRSS2	21	3	42872495	173935988	Intron of TMPRSS2(-):2Kb before exon 2	Intron of NLGN1(+):57Kb before exon 5	GRCh37	TRANSLOCATION	NLGN1 (NM_014932) - TMPRSS2 (NM_001135099) rearrangement: t(3;21)(q26.31;q22.3)(chr3:g.173935988::chr21:g.42872495)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NLGN1:TMPRSS2}	0	NA	0	119	10	118
P-0009632-T01-IM5	SOMATIC	STAT5B	MACROD2	20	17	14134124	40376785	Intron of MACROD2(+): 68Kb after exon 3	Intron of STAT5B(-): 12bp after exon 4	GRCh37	TRANSLOCATION	STAT5B (NM_012448) - MACROD2 (NM_080676) Rearrangement :  t(17;20)(q21.2;p12.1)(chr17:g.40376785::chr20:g.14134124 )	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (STAT5B-MACROD2)	0	NA	0	46	41	46
P-0038472-T01-IM6	SOMATIC	NAB2	DLGAP2	12	8	57487547	1518542	Intron of NAB2(+):166bp after exon 6	Intron of DLGAP2(+):4Kb after exon 3	GRCh37	TRANSLOCATION	NAB2 (NM_005967) - DLGAP2 (NM_004745) rearrangement: t(8;12)(p23.3;q13.3)(chr8:g.1518542::chr12:g.57487547)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NAB2:DLGAP2}	0	NA	0	6	0	5
P-0038472-T01-IM6	SOMATIC	ERBB3	ERBB3	17	12	50487479	56477717	IGR: 575Kb before C17orf112(+)	Intron of ERBB3(+):31bp after exon 2	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(12;17)(q13.2;q22)(chr12:g.56477717::chr17:g.50487479)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	97	10	96
P-0040134-T01-IM6	SOMATIC	ROS1	ROS1	6	1	117647954	154135115	Intron of ROS1(-):377bp before exon 33	Intron of TPM3(-):5Kb before exon 7	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(1;6)(q21.3;q22.1)(chr1:g.154135115::chr6:g.117647954)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TPM3:ROS1}	0	NA	0	51	10	52
P-0040225-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120497617	120503095	Intron of NOTCH2(-):45bp after exon 13	Intron of NOTCH2(-):970bp before exon 12	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.1916-970_c.2219+46inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5478	NA	0	6	6	6
P-0040225-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190711829	190728739	Intron of PMS1(+):3Kb after exon 6	Exon 10 of PMS1(+)	GRCh37	INVERSION	PMS1 (NM_000534) rearrangement: c.699+3023_c.2127inv	IMPPRECISE		MANUAL_OK	5to5	-	16910	NA	0	5	0	5
P-0040225-T01-IM6	SOMATIC	IFNGR1	IFNGR1	6	6	137522002	137523054	Intron of IFNGR1(-):15bp after exon 6	Intron of IFNGR1(-):909bp before exon 6	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement: c.734-909_c.861+16inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1052	NA	0	7	5	7
P-0040292-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	103296617	115262275	IGR: 45Kb before COL11A1(-)	Exon 19 of CSDE1(-)	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.2279:CSDE1_chr1:g.103296617inv	PRECISE		MANUAL_OK	5to5	-	11965658	NA	0	39	10	53
P-0040300-T01-IM6	SOMATIC	DNAJC8	MTOR	1	1	11172948	28541787	Exon 54 of MTOR(-)	Intron of DNAJC8(-):280bp before exon 3	GRCh37	DELETION	DNAJC8 (NM_014280) - MTOR (NM_004958) rearrangement: c.181-280:DNAJC8_c.7327:MTORdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNAJC8:MTOR}	17368839	NA	0	50	10	54
P-0040300-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156846348	201437190	Exon 14 of NTRK1(+)	3-UTR of PHLDA3(-):340bp after coding stop	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1789:NTRK1_chr1:g.201437190inv	PRECISE		MANUAL_OK	3to3	-	44590842	NA	0	106	10	106
P-0040300-T01-IM6	SOMATIC	MGA	MGA	15	15	41846191	41961556	IGR: 5Kb before TYRO3(+)	Exon 2 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.464:MGA_chr15:g.41846191del	PRECISE		MANUAL_OK	3to5	-	115365	NA	0	33	10	36
P-0040300-T01-IM6	SOMATIC	ERF	CIC	19	19	42753351	42796407	Exon 4 of ERF(-)	Intron of CIC(+):44bp before exon 13	GRCh37	DELETION	ERF (NM_006494) - CIC (NM_015125) rearrangement: c.913:ERF_c.3009-45:CICdel	PRECISE		MANUAL_OK	3to5	-	43056	NA	0	9	10	10
P-0040364-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487738	57492903	Intron of NAB2(+):357bp after exon 6	Intron of STAT6(-):42bp before exon 17	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+357:NAB2_c.1892-42:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5165	NA	0	53	10	50
P-0007690-T03-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	10684923	11172335	Intron of AP1M2(-):169bp after exon 11	Intron of SMARCA4(+):124bp before exon 35	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4912-125:SMARCA4_chr19:g.10684923del	IMPPRECISE		MANUAL_OK	3to5	-	487412	NA	0	9	0	9
P-0040307-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46739516	118268672	Intron of RAD54L(+):97bp after exon 15	IGR: 120Kb before FAM46C(+)	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.1610+97:RAD54L_chr1:g.118268672inv	PRECISE		MANUAL_OK	3to3	-	71529156	NA	0	2	10	5
P-0040307-T01-IM6	SOMATIC	CCNT1	KMT2D	12	12	49095469	49434162	Intron of CCNT1(-):613bp before exon 4	Exon 31 of KMT2D(-)	GRCh37	DUPLICATION	CCNT1 (NM_001240) - KMT2D (NM_003482) rearrangement: c.373-613:CCNT1_c.7391:KMT2Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CCNT1:KMT2D}	338693	NA	0	10	10	19
P-0040307-T01-IM6	SOMATIC	EP300	EP300	22	3	41545936	169670000	Exon 14 of EP300(+)	3-UTR of LOC100128164(-):15Kb after coding stop	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(3;22)(q26.2;q13.2)(chr3:g.169670000::chr22:g.41545936)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	26	0	25
P-0040327-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098131	178100975	Intron of NFE2L2(-):64bp before exon 3	Intron of NFE2L2(-):2Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-1976_c.313-64del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2844	NA	0	24	10	24
P-0040343-T01-IM6	SOMATIC	IL10	IL10	X	1	104497492	206944654	Intron of IL1RAPL2(+):15Kb before exon 5	Intron of IL10(-):46bp after exon 2	GRCh37	TRANSLOCATION	IL10 (NM_000572) rearrangement: t(1;X)(q32.1;q22.3)(chr1:g.206944654::chrX:g.104497492)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	6	10	6
P-0040458-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32931878	33938000	Exon 16 of BRCA2(+)	Intron of STARD13(-):76Kb after exon 5	GRCh37	DUPLICATION	BRCA2 (NM_000059) rearrangement: c.7618-1:BRCA2_chr13:g.33938000dup	PRECISE		MANUAL_OK	5to3	-	1006122	NA	0	10	10	11
P-0040466-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89692428	89693160	Intron of PTEN(+):341bp before exon 5	Intron of PTEN(+):152bp after exon 5	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.254-342_c.492+152dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	732	NA	0	4	7	4
P-0008232-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876702	42868960	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1086:TMPRSS2_c.40-59158:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2992258	NA	0	18	10	18
P-0021838-T02-IM6	SOMATIC	PTPRS	PTPRS	19	12	5240169	93413328	Intron of PTPRS(-):40bp after exon 12	3-UTR of LOC643339(-):358Kb after coding stop	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(12;19)(q22;p13.3)(chr12:g.93413328::chr19:g.5240169)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0040511-T01-IM6	SOMATIC	GNAS	GDPD5	20	11	57474193	75150246	Intron of GNAS(+):153bp after exon 3	Intron of GDPD5(-):677bp after exon 15	GRCh37	TRANSLOCATION	GNAS (NM_000516) - GDPD5 (NM_030792) rearrangement: t(11;20)(q13.4;q13.32)(chr11:g.75150246::chr20:g.57474193)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {GNAS:GDPD5}	0	NA	0	19	10	17
P-0040519-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49412345	49415628	Promoter of KMT2D(-):412bp from tx start	Exon 54 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.16549:KMT2D_chr12:g.49412345del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3283	NA	0	11	10	12
P-0040519-T01-IM6	SOMATIC	FANCA	FANCA	16	16	88532673	89865347	Intron of ZFPM1(+):13Kb after exon 1	Intron of FANCA(-):226bp after exon 10	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.893+227:FANCA_chr16:g.88532673del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1332674	NA	0	14	10	17
P-0040519-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872356	42871163	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1047:TMPRSS2_c.40-54812:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2998807	NA	0	6	0	6
P-0040520-T01-IM6	SOMATIC	PBRM1	PBRM1	16	3	85652741	52643949	Intron of GSE1(+):6Kb after exon 1	Exon 17 of PBRM1(-)	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(3;16)(p21.1;q24.1)(chr3:g.52643949::chr16:g.85652741)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	14
P-0017817-T02-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857371	9857964	Exon 13 of GRIN2A(-)	Exon 13 of GRIN2A(-)	GRCh37	DELETION	GRIN2A (NM_001134407) rearrangement: c.3437_c.4030del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	593	NA	0	40	0	40
P-0027045-T03-IM6	SOMATIC	CBL	CBL	11	11	119126552	119168343	Intron of CBL(+):16Kb before exon 3	Intron of CBL(+):152bp after exon 14	GRCh37	DUPLICATION	CBL (NM_005188) rearrangement: c.444-15893_c.2251+152dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : out of frame	41791	NA	0	18	9	18
P-0040443-T02-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185191341	185193539	Exon 11 of MAP3K13(+)	Intron of MAP3K13(+):2Kb before exon 12	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.2222_c.2431-1575del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2198	NA	0	25	10	40
P-0040443-T02-IM6	SOMATIC	FGFR3	FGFR3	4	4	1803595	1888480	Exon 7 of FGFR3(+)	5-UTR of WHSC1(+):14Kb before coding start	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.773:FGFR3_chr4:g.1888480del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGFR3:WHSC1}	84885	NA	0	3	10	3
P-0017005-T01-IM6	SOMATIC	BAZ1A	DICER1	14	14	35345373	95557454	Promoter of BAZ1A(-):123Kb from tx start	Intron of DICER1(-):8bp before exon 28	GRCh37	DUPLICATION	BAZ1A (NM_013448) - DICER1(NM_030621) Rearrangement : c.-1088:BAZ1A_c.5528-8:DICER1dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {BAZ1A:DICER1}	60212081	NA	0	39	10	41
P-0017053-T01-IM6	SOMATIC	MDC1	MDC1	15	6	52155746	30675556	Intron of TMOD3(+):539bp after exon 2	Exon 8 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;15)(p21.33;q21.2)(chr6:g.30675556::chr15:g.52155746)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0017053-T01-IM6	SOMATIC	YAP1	YAP1	17	11	76962853	102100347	IGR: 4Kb before LGALS3BP(-)	Intron of YAP1(+):85bp before exon 9	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(11;17)(q22.2;q25.3)(chr11:g.102100347::chr17:g.76962853)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	5
P-0017629-T01-IM5	SOMATIC	PDPK1	PDPK1	16	16	2150327	2647116	Intron of PKD1(-):17bp before exon 28	Intron of PDPK1(+):7bp before exon 13	GRCh37	DELETION	PDPK1 (NM_002613) rearrangement: c.1402-8:PDPK1_chr16:g.2150327del	PRECISE		MANUAL_OK	3to5	-	496789	NA	0	3	10	7
P-0017664-T01-IM5	SOMATIC	RAD21	ADH7	8	4	117869648	100338146	Exon 6 of RAD21(-)	Intron of ADH7(-):1Kb before exon 8	GRCh37	TRANSLOCATION	RAD21 (NM_006265) - ADH7 (NM_001166504) rearrangement: t(4;8)(q23;q24.11)(chr4:g.100338146::chr8:g.117869648)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAD21:ADH7}	0	NA	0	39	10	45
P-0018345-T01-IM6	SOMATIC	FH	FH	1	1	241677013	241680482	Exon 3 of FH(-)	Exon 2 of FH(-)	GRCh37	DELETION	FH (NM_000143) rearrangement: c.267_c.268del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3469	NA	0	16	10	16
P-0021129-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94911059	94964997	Exon 8 of SESN3(-)	Promoter of SESN3(-):66Kb from tx start	GRCh37	INVERSION	SESN3 (NM_144665) rearrangement: c.1071_c.-973inv	PRECISE		MANUAL_OK	3to3	-	53938	NA	0	9	10	8
P-0021343-T01-IM6	SOMATIC	DNAJB1	DNAJB1	19	19	14627857	14628950	Exon 2 of DNAJB1(-)	Exon 1 of DNAJB1(-)	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: c.211+1_c.213del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1093	NA	0	9	10	11
P-0021464-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11027524	11644644	Intron of CARM1(+):71bp after exon 8	IGR: 5Kb before CNN1(+)	GRCh37	INVERSION	CARM1 (NM_199141) rearrangement: c.1020+71_chr19:g.11644644inv	PRECISE		MANUAL_OK	3to3	-	617120	NA	0	23	10	29
P-0021989-T01-IM6	SOMATIC	TERT	TERT	5	5	1282530	106955138	Intron of TERT(-):13bp after exon 3	Intron of EFNA5(-):51Kb after exon 1	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.1769+14_g.106955138inv	PRECISE		MANUAL_OK	3to3	-	105672608	NA	0	54	10	54
P-0021989-T01-IM6	SOMATIC	PTPRS	PTPRS	19	6	5221110	57578895	Exon 20 of PTPRS(-)	IGR: 396Kb before PRIM2(+)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(6;19)(p11.2;p13.3)(chr6:g.57578895::chr19:g.5221110)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	157	10	160
P-0021991-T01-IM6	SOMATIC	FLT4	FLT4	5	5	52740102	180048094	IGR: 36Kb before FST(+)	Intron of FLT4(-):11bp after exon 14	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: g.52740102_c.2167+12inv	IMPPRECISE		MANUAL_OK	5to5	-	127307992	NA	0	5	0	5
P-0022108-T01-IM6	SOMATIC	KLHL13	STAG2	X	X	117158151	123215359	Intron of KLHL13(-):4Kb after exon 2	Exon 28 of STAG2(+)	GRCh37	INVERSION	KLHL13 (NM_001168302) - STAG2 (NM_001042749) rearrangement: c.50+4236:KLHL13_c.2905:STAG2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KLHL13:STAG2}	6057208	NA	0	4	10	4
P-0022587-T01-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48892200	79960432	Intron of TFE3(-):434bp before exon 6	Intron of ASPSCR1(+):6Kb after exon 7	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) fusion (ASPSCR1 exons 1-7 fused in-frame with TFE3 exons 6-10): t(X;17)(p11.23;q25.3)(chrX:g.48892200::chr17:g.79960432)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	13	10	15
P-0022925-T01-IM6	SOMATIC	LMNA	NTRK1	1	1	156102239	156844398	Intron of LMNA(+):2Kb after exon 3	Exon 10 of NTRK1(+)	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion (LMNA exons 1-3 fused to NTRK1 exons 10 - 17): c.513+1675:LMNA_c.1231:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMNA:NTRK1}	742159	NA	0	31	10	34
P-0023292-T01-IM6	SOMATIC	NF1	WDR19	17	4	29664493	39192994	Exon 43 of NF1(+)	Intron of WDR19(+):2Kb after exon 4	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - WDR19 (NM_025132) rearrangement: t(4;17)(p14;q11.2)(chr4:g.39192994::chr17:g.29664493)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:WDR19}	0	NA	0	22	10	26
P-0023380-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882779	42874328	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-4212:TMPRSS2_c.39+64807:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2991549	NA	0	20	10	101
P-0023818-T01-IM6	SOMATIC	GABPA	ERG	21	21	27139889	39755807	Intron of GABPA(+):1Kb before exon 10	Exon 10 of ERG(-)	GRCh37	INVERSION	GABPA (NM_002040) - ERG (NM_182918) Rearrangement :  c.1137-1426:GABPA_c.958:ERGinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GABPA:ERG}	12615918	NA	0	6	10	5
P-0023818-T01-IM6	SOMATIC	SFPQ	TFE3	X	1	48895720	35648191	Intron of TFE3(-):1bp after exon 4	Promoter of SFPQ(-):1Kb from tx start	GRCh37	TRANSLOCATION	SFPQ (NM_005066) - TFE3 (NM_006521) Fusion( SFPQ promoter region fused with TFE3 exon 5) : t(X;1)(q42.3;q23.1)(chrX:g.48895720::chr1:g.35648191)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SFPQ:TFE3}	0	NA	0	11	10	11
P-0024146-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	37483346	39576706	IGR: 163Kb before LINC01477(+)	Intron of PIK3C3(+):12bp after exon 9	GRCh37	INVERSION	PIK3C3 (NM_002647) rearrangement: chr18:g.37483346_c.984+12inv	IMPPRECISE		MANUAL_OK	3to3	-	2093360	NA	0	8	0	7
P-0024146-T01-IM6	SOMATIC	WHSC1	FGFR3	4	4	1801414	1918420	Intron of FGFR3(+):59bp before exon 4	Intron of WHSC1(+):177bp before exon 4	GRCh37	DUPLICATION	WHSC1 (NM_001042424) - FGFR3 (NM_000142) rearrangement: c.761-178:WHSC1_c.380-60:FGFR3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {WHSC1:FGFR3}	117006	NA	0	16	10	16
P-0024146-T01-IM6	SOMATIC	AMER1	AMER1	X	11	63412860	74289154	Exon 2 of AMER1(-)	IGR: 14Kb before POLD3(+)	GRCh37	TRANSLOCATION	AMER1 (NM_152424) rearrangement: t(X;11)(q11.2;q13.4)(chrX:g.63412860::chr11:g.74289154)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	14
P-0024148-T01-IM6	SOMATIC	PAX8	ACOXL	2	2	111612730	113977762	Intron of ACOXL(+):14Kb after exon 10	Intron of PAX8(-):7bp before exon 11	GRCh37	INVERSION	PAX8 (NM_003466) - ACOXL (NM_001142807) rearrangement: c.1190-7G:PAX8_c.788+13748:ACOXLinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAX8:ACOXL}	2365032	NA	0	25	10	27
P-0024149-T01-IM6	SOMATIC	NF1	NF1	17	17	29528487	29591340	Exon 11 of NF1(+)	Intron of NF1(+):906bp before exon 36	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.1244_c.4725-907inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	62853	NA	0	9	10	9
P-0024632-T01-IM6	SOMATIC	KDM5A	KDM5A	14	12	98523480	427390	IGR: 132Kb before LINC01550(-)	Exon 19 of KDM5A(-)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(12;14)(p13.33;q32.2)(chr12:g.427390::chr14:g.98523480)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	37	10	38
P-0024957-T01-IM6	SOMATIC	NOTCH2	RPF1	1	1	84962300	120458987	Intron of RPF1(+):247bp after exon 8	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) - RPF1 (NM_025065) rearrangement: c.6358:NOTCH2_c.1008+247:RPF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH2:RPF1}	35496687	NA	0	80	10	118
P-0024984-T01-IM6	SOMATIC	NOTCH3	PGLYRP2	19	19	15280930	15578564	Exon 28 of NOTCH3(-)	Promoter of PGLYRP2(-):892bp from tx start	GRCh37	DUPLICATION	NOTCH3 (NM_000435) - PGLYRP2 (NM_052890) rearrangement: c.5166:NOTCH3_c.*910:PGLYRP2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH3:PGLYRP2}	297634	NA	0	6	10	6
P-0024984-T01-IM6	SOMATIC	EP300	EP300	22	6	41572335	63379329	Exon 30 of EP300(+)	IGR: 607Kb before LGSN(-)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(6;22)(q11.1;q13.2)(chr6:g.63379329::chr22:g.41572335)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	17
P-0025388-T01-IM6	SOMATIC	CTNNA1	ALK	5	2	138259019	29446465	Intron of CTNNA1(+):1Kb before exon 12	Intron of ALK(-):71bp before exon 20	GRCh37	TRANSLOCATION	CTNNA1 (NM_001903) - ALK (NM_004304) rearrangment: t(2;5)(p23.2;q31.2)(chr2:g.29446465::chr5:g.138259019)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CTNNA1:ALK}	0	NA	0	54	10	52
P-0025463-T01-IM6	SOMATIC	KMT2C	KMT2C	21	7	11039052	151945554	3-UTR of BAGE2(-):11Kb after coding stop	Exon 14 of KMT2C(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(7;21)(q36.1;p11.1)(chr7:g.151945554::chr21:g.11039052)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	14	0	9
P-0025463-T01-IM6	SOMATIC	APC	APC	9	5	111567118	112177163	IGR: 50Kb before ACTL7B(-)	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;9)(q22.2;q31.3)(chr5:g.112177163::chr9:g.111567118)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	21	10	24
P-0025737-T01-IM6	SOMATIC	PGR	MS4A13	11	11	60287697	100998073	Intron of MS4A13(+):2Kb after exon 3	Intron of PGR(-):91bp after exon 1	GRCh37	INVERSION	PGR (NM_000926) - MS4A13 (NM_001012417) rearrangement: c.1637+92:PGR_c.129+2012:MS4A13inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PGR:MS4A13}	40710376	NA	0	6	0	8
P-0026048-T01-IM6	SOMATIC	RB1	RB1	13	13	48922041	48998290	Intron of RB1(+):42bp after exon 5	Intron of RB1(+):29Kb before exon 18	GRCh37	DELETION	RB1 (NM_000321) Rearrangement: c.539+42_c.1696-28839del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : out of frame	76249	NA	0	44	10	48
P-0026636-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123239367	123988159	3-UTR of FGFR2(-):3bp after coding stop	Intron of TACC2(+):636bp after exon 13	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) rearrangement: c.*4:FGFR2_c.7896+636:TACC2inv	PRECISE		MANUAL_OK	5to5	-	748792	NA	0	14	10	20
P-0026636-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21910667	22006156	IGR: 56Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.247:CDKN2B_chr9:g.21910667del	PRECISE		MANUAL_OK	3to5	-	95489	NA	0	73	10	90
P-0027827-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153249451	161270261	Exon 9 of FBXW7(-)	IGR: 1Mb before FSTL5(-)	GRCh37	DUPLICATION	FBXW7 (NM_033632) rearrangement: c.1327_chr4:g.161270261dup	PRECISE		MANUAL_OK	5to3	-	8020810	NA	0	9	10	9
P-0029437-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117643068	117887965	Intron of ROS1(-):511bp before exon 35	Intron of DCBLD1(+):3Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-511:ROS1_chr6:g.117887965del	PRECISE		MANUAL_OK	3to5	-	244897	NA	0	23	10	24
P-0030304-T01-IM6	SOMATIC	DNMT1	DOT1L	19	19	2189684	10244766	Intron of DOT1L(+):46bp before exon 4	Intron of DNMT1(-):126bp after exon 39	GRCh37	INVERSION	DNMT1 (NM_001379) - DOT1L (NM_032482) rearrangement: c.4816+127:DNMT1_c.201-47:DOT1Linv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {DNMT1:DOT1L}	8055082	NA	0	10	10	10
P-0030304-T01-IM6	SOMATIC	DNMT1	TYK2	19	19	10273908	10478621	Intron of DNMT1(-):93bp after exon 11	Intron of TYK2(-):109bp after exon 5	GRCh37	DUPLICATION	DNMT1 (NM_001379) - TYK2 (NM_003331) rearrangement: c.878+94:DNMT1_c.465+110:TYK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DNMT1:TYK2}	204713	NA	0	7	10	8
P-0030304-T01-IM6	SOMATIC	MEGF8	CIC	19	19	42796214	42874410	Intron of CIC(+):23bp before exon 12	Exon 38 of MEGF8(+)	GRCh37	DUPLICATION	MEGF8 (NM_001410) - CIC (NM_015125) rearrangement: c.6703:MEGF8_c.2887-24:CICdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MEGF8:CIC}	78196	NA	0	11	10	11
P-0030304-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	12	42842718	53196493	Intron of TMPRSS2(-):48bp before exon 11	IGR: 4Kb before KRT4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(12;21)(q13.13;q22.3)(chr12:g.53196493::chr21:g.42842718)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	5	0	5
P-0030556-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52598014	52605065	Intron of PBRM1(-):51bp after exon 24	Intron of PBRM1(-):5Kb after exon 23	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.3616+5492_c.3800+52dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	7051	NA	0	23	10	24
P-0031041-T01-IM6	SOMATIC	RECQL4	RECQL4	12	10	21628298	78493482	Intron of RECQL(-):103bp after exon 11	IGR: 136Kb before KCNMA1(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(10;12)(q22.3;p12.1)(chr10:g.78493482::chr12:g.21628298)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0031502-T01-IM6	SOMATIC	RAD52	RAD52	12	12	1036374	77021915	Exon 6 of RAD52(-)	IGR: 136Kb before ZDHHC17(+)	GRCh37	INVERSION	RAD52 (NM_134424) rearrangement: c.404:RAD52_chr12:g.77021915inv	PRECISE		MANUAL_OK	3to3	-	75985541	NA	0	2	6	2
P-0033042-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	101514328	120510082	5-UTR of LOC102606465(+):39Kb before coding start	Exon 8 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) Rearrangement: chr1:g.101514328_c.1427:NOTCH2del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	18995754	NA	0	45	10	53
P-0033519-T01-IM6	SOMATIC	SMARCA4	SMARCA4	20	19	10330090	11141373	IGR: 55Kb before MKKS(-)	Intron of SMARCA4(+):32bp before exon 25	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(19;20)(p13.2;p12.2)(chr19:g.11141373::chr20:g.:10330090)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	10	33
P-0033652-T01-IM6	SOMATIC	FGFR2	CCDC186	10	10	115900405	123240830	Intron of CCDC186(-):3Kb before exon 7	Intron of FGFR2(-):1Kb before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) - CCDC186(NM_018017) Rearrangement :  c.2302-1295:FGFR2_c.1222-3356:CCDC186del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:CCDC186}	7340425	NA	0	60	10	106
P-0034258-T01-IM6	SOMATIC	NCOR1	DLG2	17	11	15952268	84221683	Exon 41 of NCOR1(-)	Intron of DLG2(-):24Kb after exon 7	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - DLG2 (NM_001142699) rearrangement: t(11;17)(q14.1;p11.2)(chr11:g.84221683::chr17:g.15952268)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOR1:DLG2}	0	NA	0	7	10	7
P-0034784-T01-IM6	SOMATIC	FGFR2	KIAA1217	10	10	24620139	123242254	Intron of KIAA1217(+):50Kb before exon 4	Intron of FGFR2(-):957bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - KIAA1217 (NM_019590) fusion: c.2301+958:FGFR2_c.355-49659:KIAA1217inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:KIAA1217}	98622115	NA	0	12	10	20
P-0034784-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21971107	21981088	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement : c.251:CDKN2Ap16INK4A_chr9:g.21981088del CDKN2Ap14ARF (NM_058195) rearrangement:c.194-9881_c.294del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9981	NA	0	4	10	17
P-0034885-T01-IM6	SOMATIC	BCAS3	PPM1D	17	17	58740183	58951498	Intron of PPM1D(+):172bp before exon 6	Intron of BCAS3(+):524bp before exon 9	GRCh37	DUPLICATION	BCAS3 (NM_001099432) - PPM1D (NM_003620) rearrangement: c.585-525:BCAS3_c.1261-173:PPM1Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCAS3:PPM1D}	211315	NA	0	9	6	9
P-0034885-T01-IM6	SOMATIC	HIST1H3B	HIST1H3B	20	6	5641761	26031916	IGR: 89Kb before C20orf196(+)	Exon 1 of HIST1H3B(-)	GRCh37	TRANSLOCATION	HIST1H3B (NM_003537) rearrangement: t(6;20)(p22.2;p12.3)(chr6:g.26031916::chr20:g.5641761)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	13	10	13
P-0036098-T01-IM6	SOMATIC	YAP1	YAP1	11	11	101978421	101981862	Promoter of YAP1(+):3Kb from tx start	Exon 1 of YAP1(+)	GRCh37	DUPLICATION	YAP1 (NM_001130145) rearrangement: c.-3159_c.283dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3441	NA	0	24	10	24
P-0036673-T01-IM6	SOMATIC	PGR	SIK3	11	11	100920448	116841964	Intron of PGR(-):211bp after exon 6	Intron of SIK3(-):14Kb before exon 2	GRCh37	DUPLICATION	PGR (NM_000926) - SIK3 (NM_025164) rearrangement: c.2488+212:PGR_c.100-14184:SIK3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PGR:SIK3}	15921516	NA	0	6	9	7
P-0037453-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16264638	42551901	Intron of SPEN(+):137bp after exon 13	IGR: 67Kb before GUCA2B(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.10704+137:SPEN_chr1:g.42551901inv	PRECISE		MANUAL_OK	3to3	-	26287263	NA	0	7	8	7
P-0037926-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68770959	68772126	Promoter of CDH1(+):235bp from tx start	Intron of CDH1(+):73bp before exon 2	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.49-74:CDH1_chr16:g.68770959del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1167	NA	0	33	0	36
P-0039552-T01-IM6	SOMATIC	EP300	EP300	22	22	41505135	41565559	Intron of EP300(+):8Kb before exon 2	Exon 26 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.95-8056_c.4225dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	60424	NA	0	6	10	6
P-0039908-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	83930601	89357172	Promoter of MLYCD(+):2Kb from tx start	Exon 6 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.462:ANKRD11_chr16:g.83930601del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5426571	NA	0	63	10	66
P-0040475-T01-IM6	SOMATIC	MEF2B	ZNF506	19	19	19257139	19931452	Exon 8 of MEF2B(-)	Intron of ZNF506(-):957bp after exon 1	GRCh37	DUPLICATION	MEF2B (NM_001145785) - ZNF506 (NM_001099269) rearrangement: c.824:MEF2B_c.3+958:ZNF506dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MEF2B:ZNF506}	674313	NA	0	4	10	12
P-0020150-T02-IM6	SOMATIC	INPPL1	INPPL1	11	11	71940349	71982730	Intron of INPPL1(+):75bp after exon 5	IGR: 21Kb before CLPB(-)	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.659+75:INPPL1_chr11:g.71982730del	PRECISE		MANUAL_OK	3to5	-	42381	NA	0	55	10	64
P-0020150-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875211	42867836	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1331:TMPRSS2_c.40-57667:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2992625	NA	0	167	10	186
P-0025699-T02-IM6	SOMATIC	TRIM24	BRAF	7	7	138259061	140486854	Intron of TRIM24(+):674bp after exon 12	Intron of BRAF(-):493bp after exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.2014+674:TRIM24_c.1177+494:BRAFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2227793	NA	0	12	0	10
P-0021806-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36213060	38318596	Intron of KMT2B(+):200bp before exon 4	3-UTR of LOC100631378(-):27Kb after coding stop	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.2458-201:KMT2B_chr19:g.38318596inv	PRECISE		MANUAL_OK	5to5	-	2105536	NA	0	20	10	23
P-0022337-T04-IM6	SOMATIC	FGFR2	TBC1D4	13	10	75946350	123241723	Intron of TBC1D4(-):10Kb before exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - TBC1D4 (NM_014832) fusion: t(10;13)(q26.13;q22.2)(chr10:g.123241723::chr13:g.75946350)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:TBC1D4}	0	NA	0	9	0	9
P-0026050-T04-IM6	SOMATIC	ATR	ATR	3	3	142237194	142238601	Intron of ATR(-):1Kb after exon 24	Exon 24 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.4292_c.4382+1317del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1407	NA	0	7	5	7
P-0026050-T04-IM6	SOMATIC	BRAF	BRAF	7	7	140494164	145389205	Exon 8 of BRAF(-)	IGR: 424Kb before CNTNAP2(+)	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1084:BRAF_chr7:g.145389205del	PRECISE		MANUAL_OK	3to5	-	4895041	NA	0	129	10	135
P-0026050-T04-IM6	SOMATIC	BTK	BTK	X	X	82536485	100617693	IGR: 227Kb before POU3F4(+)	Intron of BTK(-):16bp before exon 6	GRCh37	INVERSION	BTK (NM_000061) rearrangement: c.392-16:BTK_chrX:g.82536485inv	IMPPRECISE		MANUAL_OK	3to3	-	18081208	NA	0	13	0	15
P-0038074-T02-IM6	SOMATIC	BRCA2	BRCA2	13	13	32910509	32911232	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.2017_c.2740del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	723	NA	0	53	10	55
P-0039648-T03-IM6	SOMATIC	CUL1	BRAF	7	7	140492893	148460538	Intron of BRAF(-):1Kb after exon 8	Intron of CUL1(+):3Kb after exon 7	GRCh37	INVERSION	CUL1 (NM_003592) - BRAF (NM_004333) fusion: c.789+2950:CUL1_c.1140+1215:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CUL1:BRAF}	7967645	NA	0	79	10	78
P-0039994-T03-IM6	SOMATIC	NF1	NF1	17	5	29527467	37923642	Exon 9 of NF1(+)	IGR: 50Kb before GDNF-AS1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(5;17)(p13.2;q11.2)(chr5:g.37923642::chr17:g.29527467)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	8
P-0040536-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52649874	52677342	Intron of PBRM1(-):402bp before exon 16	Exon 10 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.917_c.1819-402dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	27468	NA	0	34	10	35
P-0040537-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57858767	57860017	Intron of GLI1(+):116bp after exon 4	Intron of GLI1(+):5bp before exon 8	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: c.389+116_c.763-6del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1250	NA	0	2	5	2
P-0040540-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55146402	55222090	Intron of EGFR(+):59Kb after exon 1	Intron of EGFR(+):245bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+59344_c.889+245del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	75688	NA	0	14	0	14
P-0040579-T01-IM6	SOMATIC	TBC1D24	TSC2	16	16	2131633	2549287	Exon 31 of TSC2(+)	Intron of TBC1D24(+):70bp before exon 5	GRCh37	DUPLICATION	TBC1D24 (NM_001199107) - TSC2 (NM_000548) rearrangement: c.1143-71:TBC1D24_c.3648:TSC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TBC1D24:TSC2}	417654	NA	0	12	10	13
P-0040588-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	112924274	115772818	Intron of PTPN11(+):4bp before exon 11	IGR: 624Kb before MED13L(-)	GRCh37	DELETION	PTPN11 (NM_002834) rearrangement: c.1225-5:PTPN11_chr12:g.115772818del	PRECISE		MANUAL_OK	3to5	-	2848544	NA	0	3	5	3
P-0040588-T01-IM6	SOMATIC	ATR	ATR	3	3	141768495	142180968	Intron of TFDP2(-):43Kb after exon 3	Intron of ATR(-):36bp before exon 42	GRCh37	DUPLICATION	ATR (NM_001184) rearrangement: c.7042-36:ATR_chr3:g.141768495dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TFDP2:ATR}	412473	NA	0	14	0	14
P-0040595-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868848	42870360	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):244bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-244:TMPRSS2_c.18+1439:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3001512	NA	0	35	10	39
P-0040602-T01-IM6	SOMATIC	STK11	STK11	19	19	1219317	1220443	Intron of STK11(+):5bp before exon 3	Exon 4 of STK11(+)	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.375-6_c.536inv	PRECISE		MANUAL_OK	5to5	-	1126	NA	0	41	10	67
P-0040684-T01-IM6	SOMATIC	AKT3	AKT3	1	1	239082557	243716154	IGR: 439Kb before LINC01139(-)	Exon 10 of AKT3(-)	GRCh37	INVERSION	AKT3 (NM_005465) rearrangement: c.1040:AKT3_chr1:g.239082557inv	PRECISE		MANUAL_OK	3to3	-	4633597	NA	0	24	10	25
P-0040684-T01-IM6	SOMATIC	UNK	H3F3B	17	17	73774762	73782813	Exon 4 of H3F3B(-)	Intron of UNK(+):2Kb after exon 1	GRCh37	INVERSION	UNK (NM_001080419) - H3F3B (NM_005324) rearrangement: c.104+1748:UNK_c.325:H3F3Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {UNK:H3F3B}	8051	NA	0	2	10	4
P-0040690-T01-IM6	SOMATIC	ATR	ATR	3	3	142272631	142274617	Intron of ATR(-):35bp after exon 11	Intron of ATR(-):101bp after exon 10	GRCh37	DUPLICATION	ATR (NM_001184) rearrangement: c.2341+102_c.2532+36dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1986	NA	0	131	10	135
P-0040690-T01-IM6	SOMATIC	FYN	FYN	6	6	112012762	112015821	Intron of FYN(-):3Kb after exon 9	Intron of FYN(-):9bp after exon 8	GRCh37	DUPLICATION	FYN (NM_153047) rearrangement: c.1110+10_c.1264+2816dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	3059	NA	0	52	10	52
P-0040739-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872529	42869197	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):848bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exons 1-2 fused to ERG exons 4-11): c.126+849:TMPRSS2_ c.40-54985:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2996668	NA	0	35	10	38
P-0040741-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176561059	176562307	5-UTR of NSD1(+):1Kb before coding start	Exon 2 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.203:NSD1_chr5:g.176561059del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1248	NA	0	8	9	8
P-0040748-T01-IM6	SOMATIC	NF1	NF1	17	17	29662315	29679404	Intron of NF1(+):266bp after exon 40	Exon 51 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7587:NF1_chr17:g.29662315del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17089	NA	0	8	0	10
P-0030521-T02-IM6	SOMATIC	CNTLN	FANCC	9	9	17473117	97897880	Intron of CNTLN(+):6Kb after exon 23	Intron of FANCC(-):96bp before exon 8	GRCh37	INVERSION	CNTLN (NM_017738) - FANCC (NM_000136) rearrangement: c.3855+6228:CNTLN_c.687-96:FANCCinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CNTLN:FANCC}	80424763	NA	0	41	10	38
P-0031393-T02-IM6	SOMATIC	CYB5R3	EWSR1	22	22	29687336	43030399	Intron of EWSR1(+):217bp before exon 10	Intron of CYB5R3(-):2Kb after exon 3	GRCh37	INVERSION	CYB5R3 (NM_001171660) - EWSR1 (NM_013986) rearrangement: c.252+2322:CYB5R3_c.993-218:EWSR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CYB5R3:EWSR1}	13343063	NA	0	33	10	40
P-0039523-T02-IM6	SOMATIC	ARID1A	ARID1A	18	1	40077260	27101004	5-UTR of LINC00907(+):194Kb before coding start	Exon 18 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;18)(p36.11;q12.3)(chr1:g.27101004::chr18:g.40077260)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	123	0	122
P-0040762-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117642771	117886007	Intron of ROS1(-):214bp before exon 35	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-214:ROS1_chr6:g.117886007del	IMPPRECISE		MANUAL_OK	3to5	-	243236	NA	0	5	0	5
P-0021969-T02-IM6	SOMATIC	JAK1	JAK1	1	1	65332888	65452897	Exon 7 of JAK1(-)	3-UTR of LINC01359(-):15Kb after coding stop	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.651:JAK1_chr1:g.65452897del	PRECISE		MANUAL_OK	3to5	-	120009	NA	0	20	10	20
P-0021969-T02-IM6	SOMATIC	MAP3K13	TNIK	3	3	170782021	185165927	Intron of TNIK(-):268bp before exon 30	Intron of MAP3K13(+):192bp after exon 5	GRCh37	INVERSION	MAP3K13 (NM_004721) - TNIK (NM_015028) rearrangement: c.1010+192:MAP3K13_c.4000-268:TNIKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MAP3K13:TNIK}	14383906	NA	0	29	10	29
P-0040754-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872498	42870317	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):201bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-201:TMPRSS2_c.40-54954:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2997819	NA	0	114	10	116
P-0040947-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9787031	9911454	Exon 24 of PIK3CD(+)	Intron of CTNNBIP1(-):620bp before exon 6	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.3062:PIK3CD_chr1:g.9911454del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	124423	NA	0	11	10	19
P-0038086-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212566860	212692211	Exon 12 of ERBB4(-)	Intron of ERBB4(-):39Kb before exon 4	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.422-39327_c.1321del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	125351	NA	0	14	10	14
P-0038086-T01-IM6	SOMATIC	GNAQ	GNAQ	9	9	80409568	80877309	Intron of GNAQ(-):60bp before exon 5	Intron of CEP78(+):513bp before exon 12	GRCh37	DELETION	GNAQ (NM_002072) rearrangement: c.606-60:GNAQ_chr9:g.80877309del	PRECISE		MANUAL_OK	3to5	-	467741	NA	0	51	10	62
P-0022143-T04-IM6	SOMATIC	ERCC2	ERCC2	19	19	45864954	45867309	Intron of ERCC2(-):54bp before exon 12	Exon 10 of ERCC2(-)	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.884_c.1119-54inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2355	NA	0	188	10	268
P-0040574-T01-IM6	SOMATIC	EML4	ALK	2	2	29447738	42506401	Intron of ALK(-):588bp after exon 19	Intron of EML4(+):2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon5 fused with ALK exon20) : c.668-1589:EML4_c.3172+589:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058663	NA	0	103	10	103
P-0040643-T01-IM6	SOMATIC	RARA	FER1L5	17	2	38504786	97351976	Intron of RARA(+):70bp after exon 3	Exon 23 of FER1L5(+)	GRCh37	TRANSLOCATION	RARA (NM_000964) - FER1L5 (NM_001113382) rearrangement: t(2;17)(q11.2;q21.2)(chr2:g.97351976::chr17:g.38504786)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RARA:FER1L5}	0	NA	0	23	10	23
P-0038522-T03-IM6	SOMATIC	BRCA2	BRCA2	13	13	32972418	32973957	Exon 27 of BRCA2(+)	Promoter of BRCA2(+):84Kb from tx start	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.9768:BRCA2_chr13:g.32973957inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1539	NA	0	10	10	10
P-0041007-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11116690	11144276	Intron of SMARCA4(+):2Kb before exon 14	Intron of SMARCA4(+):83bp after exon 26	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.2002-1888_c.3774+83dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : in frame	27586	NA	0	45	10	50
P-0041032-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9781716	20738691	Intron of PIK3CD(+):71bp after exon 15	3-UTR of LINC01141(-):17Kb after coding stop	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.1955+71:PIK3CD_chr1:g.20738691del	PRECISE		MANUAL_OK	3to5	-	10956975	NA	0	4	6	4
P-0002408-T03-IM6	SOMATIC	EML4	ALK	2	2	29448053	42544452	Intron of ALK(-):273bp after exon 19	Intron of EML4(+):114bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2057-115:EML4_c.3172+274:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13096399	NA	0	64	10	64
P-0040422-T02-IM6	SOMATIC	ROS1	ROS1	6	6	117642283	117643413	Intron of ROS1(-):138bp after exon 35	Intron of ROS1(-):856bp before exon 35	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5642-856_c.5777+139inv	PRECISE		MANUAL_OK	3to3	-	1130	NA	0	2	10	2
P-0040995-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	150477103	151882704	IGR: 11Kb before TMEM176B(-)	Exon 34 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.5021:KMT2C_chr7:g.150477103del	PRECISE		MANUAL_OK	3to5	-	1405601	NA	0	9	10	16
P-0040997-T01-IM6	SOMATIC	RPS6KA4	EEFSEC	11	3	64129088	128107142	Intron of RPS6KA4(+):25bp before exon 7	Intron of EEFSEC(+):20Kb before exon 7	GRCh37	TRANSLOCATION	RPS6KA4 (NM_003942) - EEFSEC (NM_021937) rearrangement: t(3;11)(q21.3;q13.1)(chr3:g.128107142::chr11:g.64129088)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RPS6KA4:EEFSEC}	0	NA	0	27	10	29
P-0041103-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	19	42871994	38571571	Intron of TMPRSS2(-):2Kb before exon 2	5-UTR of SIPA1L3(+):634bp before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.13;q22.3)(chr19:g.38571571::chr21:g.42871994)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	21	10	22
P-0041103-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39961941	42871673	3-UTR of ERG(-):72Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1557:TMPRSS2_chr21:g.39961941del	PRECISE		MANUAL_OK	3to5	-	2909732	NA	0	28	10	31
P-0041108-T01-IM6	SOMATIC	MAPK3	MAPK3	16	16	30133192	30140007	Exon 2 of MAPK3(-)	IGR: 12Kb before MAPK3(-)	GRCh37	DELETION	MAPK3 (NM_002746) rearrangement: c.306:MAPK3_chr16:g.30140007del	PRECISE		MANUAL_OK	3to5	-	6815	NA	0	31	10	31
P-0041108-T01-IM6	SOMATIC	FGFR3	FGFR3	4	2	1808368	16434694	Exon 16 of FGFR3(+)	IGR: 244Kb before GACAT3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(2;4)(p24.3;p16.3)(chr2:g.16434694::chr4:g.1808368)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	126	10	131
P-0023910-T09-IM6	SOMATIC	FLT4	FLT4	12	5	97517987	180046682	IGR: 217Kb before NEDD1(+)	Exon 18 of FLT4(-)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;12)(q35.3;q23.1)(chr5:g.180046682::chr12:g.97517987)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	88	10	88
P-0023910-T09-IM6	SOMATIC	FAT1	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	76	10	76
P-0029327-T02-IM6	SOMATIC	ICOSLG	ICOSLG	21	21	45514280	45658493	Intron of TRAPPC10(+):166bp after exon 20	Intron of ICOSLG(-):122bp before exon 2	GRCh37	DUPLICATION	ICOSLG (NM_015259) rearrangement: c.15-122:ICOSLG_chr21:g.45514280dup	PRECISE		MANUAL_OK	5to3	-	144213	NA	0	20	10	21
P-0038248-T02-IM6	SOMATIC	EWSR1	EWSR1	X	22	18240954	29683864	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):730bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.13)(chr22:g.29683864::chrX:g.18240954)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	46	10	37
P-0040504-T01-IM6	SOMATIC	SLIT2	ETV6	12	4	12034059	20374490	Intron of ETV6(+):3Kb before exon 6	Intron of SLIT2(+):95Kb before exon 5	GRCh37	TRANSLOCATION	SLIT2 (NM_004787) - ETV6 (NM_001987) rearrangement: t(4;12)(p15.31;p13.2)(chr4:g.20374490::chr12:g.12034059)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SLIT2:ETV6}	0	NA	0	121	10	120
P-0040504-T01-IM6	SOMATIC	BAIAP2	RPTOR	17	17	78933713	79021841	Intron of RPTOR(+):164bp before exon 30	Intron of BAIAP2(+):6Kb before exon 2	GRCh37	DUPLICATION	BAIAP2 (NM_017451) - RPTOR (NM_020761) rearrangement: c.55-5627:BAIAP2_c.3478-165:RPTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BAIAP2:RPTOR}	88128	NA	0	6	5	6
P-0040925-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	31655075	36218140	IGR: 111Kb before TSHZ3(-)	Exon 15 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.4087:KMT2B_chr19:g.31655075del	PRECISE		MANUAL_OK	3to5	-	4563065	NA	0	109	10	119
P-0040955-T01-IM6	SOMATIC	SUGP1	MEF2B	19	19	19257994	19414610	Intron of MEF2B(-):2bp before exon 5	Exon 5 of SUGP1(-)	GRCh37	DELETION	SUGP1 (NM_172231) - MEF2B (NM_001145785) rearrangement: c.585:SUGP1_c.394-2:MEF2Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUGP1:MEF2B}	156616	NA	0	69	10	83
P-0040965-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39968609	42874875	3-UTR of ERG(-):65Kb after coding stop	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4759:TMPRSS2_chr21:g.39968609del	PRECISE		MANUAL_OK	3to5	-	2906266	NA	0	59	10	66
P-0040997-T02-IM6	SOMATIC	FANCA	FANCA	16	16	89831561	89950492	Intron of FANCA(-):87bp before exon 28	Intron of TCF25(+):497bp before exon 3	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.2602-87:FANCA_chr16:g.89950492del	PRECISE		MANUAL_OK	3to5	-	118931	NA	0	10	10	11
P-0041063-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55178967	55222140	Intron of EGFR(+):31Kb before exon 2	Intron of EGFR(+):295bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-31012_c.889+295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	43173	NA	0	71	10	80
P-0041118-T02-IM6	SOMATIC	CD74	ROS1	6	5	117647424	149782265	Exon 33 of ROS1(-)	Intron of CD74(-):77bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782265::chr6:g.117647424)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	61	10	59
P-0028392-T03-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29688636	46333035	Intron of EWSR1(+):41bp after exon 12	Intron of CREB3L1(+):295bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333035::chr22:g.29688636)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB3L1}	0	NA	0	279	10	356
P-0031340-T02-IM6	SOMATIC	RUFY2	RET	10	10	43611559	70141796	Intron of RET(+):472bp before exon 12	Intron of RUFY2(-):640bp before exon 11	GRCh37	INVERSION	RUFY2 (NM_017987) - RET (NM_020975) fusion: c.1045-640:RUFY2_c.2137-473:RETinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RUFY2:RET}	26530237	NA	0	23	0	33
P-0037465-T02-IM6	SOMATIC	CREBBP	SLX4	16	16	3647884	3825170	Exon 6 of SLX4(-)	Intron of CREBBP(-):476bp before exon 12	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2159-476:CREBBP_c.1280:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	177286	NA	0	84	10	91
P-0037465-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411867	139450872	Intron of NOTCH1(-):30bp before exon 9	IGR: 9Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1442-30:NOTCH1_chr9:g.139450872del	PRECISE		MANUAL_OK	3to5	-	39005	NA	0	204	10	229
P-0041175-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52441603	179876142	Intron of BAP1(-):127bp before exon 6	IGR: 259Kb before LOC101928790(+)	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.376-127:BAP1_chr3:g.179876142inv	PRECISE		MANUAL_OK	3to3	-	127434539	NA	0	14	10	14
P-0008440-T02-IM6	SOMATIC	SMO	SMO	7	7	128852180	134549261	Exon 12 of SMO(+)	5-UTR of CALD1(+):3Kb before coding start	GRCh37	DELETION	SMO (NM_005631) rearrangement: c.2252:SMO_chr7:g.134549261del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMO:CALD1}	5697081	NA	0	64	10	72
P-0041190-T01-IM6	SOMATIC	AKT1	AKT1	14	14	79788055	105238506	Intron of NRXN3(+):146Kb before exon 13	Intron of AKT1(-):195bp after exon 12	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: c.1260+196:AKT1_chr14:g.79788055del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25450451	NA	0	20	10	20
P-0041192-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610571	61657248	Intron of RET(+):387bp after exon 11	Intron of CCDC6(-):9Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+8632:CCDC6_c.2136+387:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18046677	NA	0	33	10	55
P-0041274-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71019880	71027028	Intron of FOXP1(-):6bp after exon 15	Exon 11 of FOXP1(-)	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1299_c.1722+7del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7148	NA	0	10	10	10
P-0000828-T03-IM6	SOMATIC	BRAF	GTF2IRD1	7	7	73988166	140483554	Intron of GTF2IRD1(+):14Kb after exon 22	Intron of BRAF(-):597bp before exon 10	GRCh37	INVERSION	BRAF (NM_004333) - GTF2IRD1 (NM_005685) rearrangement: c.1178-597:BRAF_c.2320+14181:GTF2IRD1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:GTF2IRD1}	66495388	NA	0	46	0	48
P-0008440-T03-IM6	SOMATIC	SMO	SMO	7	7	128852180	134549261	Exon 12 of SMO(+)	5-UTR of CALD1(+):3Kb before coding start	GRCh37	DELETION	SMO (NM_005631) rearrangement: c.2252:SMO_chr7:g.134549261del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMO:CALD1}	5697081	NA	0	10	10	10
P-0041363-T01-IM6	SOMATIC	BARD1	BARD1	13	2	69145496	215610383	IGR: 290Kb before LINC00550(-)	Intron of BARD1(-):62bp after exon 8	GRCh37	TRANSLOCATION	BARD1 (NM_000465) rearrangement: t(2;13)(q35;q21.33)(chr2:g.215610383::chr13:g.69145496)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	20	10	21
P-0041368-T01-IM6	SOMATIC	MSH6	MSH6	2	2	48023020	58788022	Intron of MSH6(+):12bp before exon 3	5-UTR of LINC01122(+):503Kb before coding start	GRCh37	INVERSION	MSH6 (NM_000179) rearrangement: c.458-13:MSH6_chr2:g.58788022inv	PRECISE		MANUAL_OK	5to5	-	10765002	NA	0	7	7	7
P-0005264-T03-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186503732	186523625	Exon 5 of EIF4A2(+)	5-UTR of RFC4(-):16Kb before coding start	GRCh37	INVERSION	EIF4A2 (NM_001967) rearrangement: c.409:EIF4A2_chr3:g.186523625inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EIF4A2:RFC4}	19893	NA	0	24	0	26
P-0034632-T02-IM6	SOMATIC	CDH1	CDH1	16	15	68847420	79195333	Intron of CDH1(+):22bp after exon 9	IGR: 19Kb before CTSH(-)	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(15;16)(q25.1;q22.1)(chr15:g.79195333::chr16:g.68847420)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0037182-T03-IM6	SOMATIC	EWSR1	EWSR1	22	5	29683808	150468147	Intron of EWSR1(+):685bp after exon 8	Promoter of TNIP1(-):59Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(5;22)(q33.1;q12.2)(chr5:g.150468147::chr22:g.29683808)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	111	10	114
P-0041287-T01-IM6	SOMATIC	ALK	ALK	2	2	29450757	30093953	Intron of ALK(-):219bp before exon 17	Intron of ALK(-):49Kb after exon 1	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.667+48906_c.2816-219del	PRECISE		MANUAL_OK	3to5	Deletion of 15 exons : in frame	643196	NA	0	3	4	3
P-0041289-T01-IM6	SOMATIC	FLCN	SLC38A10	17	17	17127187	79248547	Intron of FLCN(-):48bp after exon 6	Intron of SLC38A10(-):1Kb after exon 8	GRCh37	DUPLICATION	FLCN (NM_144997) - SLC38A10 (NM_001037984) rearrangement: c.618+49:FLCN_c.912+1222:SLC38A10dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FLCN:SLC38A10}	62121360	NA	0	4	6	4
P-0041289-T01-IM6	SOMATIC	PTCH1	PTCH1	9	9	98231071	98268600	Exon 14 of PTCH1(-)	Intron of PTCH1(-):88bp after exon 2	GRCh37	DELETION	PTCH1 (NM_000264) rearrangement: c.394+89_c.2212del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37529	NA	0	8	10	8
P-0033315-T03-IM6	SOMATIC	KCNMB3	PIK3CB	3	3	138426110	178983153	Exon 9 of PIK3CB(-)	Intron of KCNMB3(-):1Kb after exon 1	GRCh37	DELETION	KCNMB3 (NM_171828) - PIK3CB (NM_006219) rearrangement: c.62+1284:KCNMB3_c.1421:PIK3CBdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KCNMB3:PIK3CB}	40557043	NA	0	63	10	63
P-0033315-T03-IM6	SOMATIC	KDR	KDR	4	4	55966441	55972831	Intron of KDR(-):1Kb before exon 16	Intron of KDR(-):22bp after exon 11	GRCh37	DELETION	KDR (NM_002253) rearrangement: c.1536+23_c.2267-1471del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	6390	NA	0	60	10	61
P-0041551-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683251	32416605	Intron of EWSR1(+):128bp after exon 8	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416605::chr22:g.29683251)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	29	10	30
P-0022642-T03-IM6	SOMATIC	CCDC6	RET	10	10	43611768	61626673	Intron of RET(+):263bp before exon 12	Intron of CCDC6(-):14Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-14213:CCDC6_c.2137-264:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18014905	NA	0	115	10	136
P-0038369-T02-IM6	SOMATIC	TAP1	TAP1	6	6	27816456	32821162	IGR: 10Kb before HIST1H2BN(+)	Exon 1 of TAP1(-)	GRCh37	INVERSION	TAP1 (NM_000593) rearrangement: c.432:TAP1_chr6:g.27816456inv	PRECISE		MANUAL_OK	5to5	-	5004706	NA	0	16	10	20
P-0041429-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89687739	89692662	Intron of PTEN(+):2Kb after exon 3	Intron of PTEN(+):107bp before exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.209+2425_c.254-108del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4923	NA	0	6	10	6
P-0041438-T01-IM6	SOMATIC	ALK	TTC27	2	2	29447817	32871033	Intron of ALK(-):509bp after exon 19	Intron of TTC27(+):4Kb before exon 5	GRCh37	INVERSION	ALK (NM_004304) - TTC27 (NM_017735) rearrangement: c.3172+510:ALK_c.538-4165:TTC27inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ALK:TTC27}	3423216	NA	0	54	10	73
P-0041525-T01-IM6	SOMATIC	CRKL	CRKL	22	7	21304014	10322336	Exon 3 of CRKL(+)	IGR: 648Kb before PER4(+)	GRCh37	TRANSLOCATION	CRKL (NM_005207) rearrangement: t(7;22)(p21.3;q11.21)(chr7:g.10322336::chr22:g.21304014)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	349	10	376
P-0041579-T01-IM6	SOMATIC	KMT2D	KMT2D	12	8	49431612	100297214	Exon 34 of KMT2D(-)	Intron of VPS13B(+):10Kb after exon 19	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(8;12)(q22.2;q13.12)(chr8:g.100297214::chr12:g.49431612)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	6	5	6
P-0002386-T02-IM5	SOMATIC	KLF4	KLF4	9	9	110250359	110402324	Exon 3 of KLF4(-)	IGR: 155Kb before KLF4(-)	GRCh37	DUPLICATION	KLF4 (NM_004235) rearrangement: c.316:KLF4_g.110402324dup	PRECISE		MANUAL_OK	5to3	-	151965	NA	0	21	31	21
P-0005361-T01-IM5	SOMATIC	TLL1	POLE	12	4	133202781	167006080	Exon 46 of POLE(-)	Intron of TLL1(+): 6Kb before exon 19	GRCh37	TRANSLOCATION	TLL1 (NM_012464) - POLE  (NM_006231) Rearrangement :  t(4;12)(4q32.3;12q24.33)(chr4:g.167006080::chr12:g.133202781)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (TLL1-POLE)	0	NA	0	61	65	61
P-0005361-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1742962	1803212	Intron of TACC3(+): 249bp after exon 13	Exon 5 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) -TACC3 (NM_006342) Fusion (FGFR3 exon 5 fused to TACC3 exon 14) : c.564:FGFR3_c.2223+249:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	60250	NA	0	5	5	5
P-0019280-T03-IM6	SOMATIC	POLD1	POLD1	19	9	50912068	18503608	Exon 15 of POLD1(+)	Intron of ADAMTSL1(+):1Kb before exon 2	GRCh37	TRANSLOCATION	POLD1 (NM_002691) Rearrangement : t(9;19)(p22.2; q13.33)(chr9:g.18503608::chr19:g.50912068)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	51	10	49
P-0019280-T03-IM6	SOMATIC	EGFR	EGFR	7	7	55180424	55221919	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):74bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-29555_c.889+74del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41495	NA	0	384	10	531
P-0019280-T04-IM6	SOMATIC	POLD1	POLD1	19	9	50912068	18503608	Exon 15 of POLD1(+)	Intron of ADAMTSL1(+):1Kb before exon 2	GRCh37	TRANSLOCATION	POLD1 (NM_002691) Rearrangement : t(9;19)(q24.3;q12.2)(chr9:g.18503608::chr19:g.50912068)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	94	10	93
P-0019280-T04-IM6	SOMATIC	EGFR	EGFR	7	7	55180261	55221948	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):103bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-29718_c.889+103del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41687	NA	0	101	0	1405
P-0023523-T02-IM6	SOMATIC	VPS8	PRKCI	3	3	169997984	184650888	Intron of PRKCI(+):30bp before exon 9	Intron of VPS8(+):3Kb after exon 33	GRCh37	DUPLICATION	VPS8 (NM_015303) - PRKCI (NM_002740) rearrangement: c.2892+2532:VPS8_c.706-31:PRKCIdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {VPS8:PRKCI}	14652904	NA	0	141	10	152
P-0037356-T02-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64138297	64185239	Intron of RPS6KA4(+):99bp after exon 16	IGR: 31Kb before LOC100996455(+)	GRCh37	DELETION	RPS6KA4 (NM_003942) rearrangement: c.2121+99:RPS6KA4_chr11:g.64185239del	PRECISE		MANUAL_OK	3to5	-	46942	NA	0	50	10	51
P-0037356-T02-IM6	SOMATIC	PREX2	PREX2	8	2	68950444	195591225	Exon 7 of PREX2(+)	IGR: 4Kb before LOC101927431(+)	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(2;8)(q32.3;q13.2)(chr2:g.195591225::chr8:g.68950444)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	12
P-0038857-T02-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	6630097	39638028	IGR: 119Kb before LINC01387(+)	Intron of PIK3C3(+):13bp after exon 22	GRCh37	INVERSION	PIK3C3 (NM_002647) rearrangement: c.2432+13:PIK3C3_chr18:g.6630097inv	PRECISE		MANUAL_OK	3to3	-	33007931	NA	0	111	10	110
P-0040610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876990	42877236	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2641:TMPRSS2_c.40-59446:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000246	NA	0	2	6	2
P-0041482-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	69426341	71939183	IGR: 30Kb before CCND1(+)	Intron of INPPL1(+):50bp before exon 2	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.183-51:INPPL1_chr11:g.69426341inv	PRECISE		MANUAL_OK	5to5	-	2512842	NA	0	32	10	36
P-0041610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39833385	42869118	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):927bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+928:TMPRSS2_c.19-15841:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035733	NA	0	135	10	141
P-0038301-T01-IM6	SOMATIC	DOT1L	DOT1L	19	3	2217793	40523145	Exon 22 of DOT1L(+)	Intron of ZNF619(+):933bp before exon 3	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(3;19)(p22.1;p13.3)(chr3:g.40523145::chr19:g.2217793)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	75	10	88
P-0041536-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189643	55222011	Intron of EGFR(+):20Kb before exon 2	Intron of EGFR(+):166bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-20336_c.889+166del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	32368	NA	0	100	10	559
P-0041658-T01-IM6	SOMATIC	WT1	WT1	11	11	32442154	32449983	Intron of WT1(-):3Kb before exon 4	Intron of WT1(-):59bp after exon 2	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.769+60_c.873-2954del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	7829	NA	0	5	0	5
P-0041658-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52705326	54078970	Intron of PPP2R1A(+):39bp after exon 2	Intron of ZNF331(+):980bp before exon 5	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.169+39:PPP2R1A_chr19:g.54078970inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1373644	NA	0	13	10	13
P-0041658-T01-IM6	SOMATIC	NF2	NF2	22	22	30063384	30067957	Intron of NF2(+):937bp before exon 10	Intron of NF2(+):20bp after exon 11	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.886-938_c.1122+20inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4573	NA	0	12	10	12
P-0041667-T01-IM6	SOMATIC	TERT	TERT	5	5	1295248	14183299	Promoter of TERT(-):42Kb from tx start	Intron of TRIO(+):39Kb after exon 1	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-144_chr5:g.14183299del	PRECISE		MANUAL_OK	3to5	-	12888051	NA	0	32	10	33
P-0041667-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55184187	55222653	Intron of EGFR(+):26Kb before exon 2	Intron of EGFR(+):808bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-25792_c.889+808del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	38466	NA	0	57	10	60
P-0025678-T02-IM6	SOMATIC	TP53	TP53	17	17	7575226	7577350	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):148bp after exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.782+149_c.994-1193del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2124	NA	0	10	8	10
P-0000068-T01-IM3	SOMATIC	ERBB2	GRB7	17	17	37883860	37897388	Intron of ERBB2(+): 60bp after exon 26	5-UTR of GRB7(+): 1Kb before coding start	GRCh37	DELETION		35333463-N_bc28		AUTO_OK	3to5	Transcript fusion (ERBB2-GRB7)	13528	NA	0	6	20	9
P-0000206-T01-IM3	SOMATIC	TP53	TP53	17	17	7562428	7576749	IGR: 1Kb after ATP1B2(+)	Intron of TP53(-): 92bp before exon 10	GRCh37	DELETION	TP53 (NM_000546) 14321bp deletion (g.7562428_c.993+104del)	PRECISE		MANUAL_OK	3to5	-	14321	NA	0	25	47	39
P-0000377-T03-IM3	SOMATIC	KDM5A	KDM5A	12	12	406052	470477	Intron of KDM5A(-): 155bp after exon 25	Intron of KDM5A(-): 2Kb after exon 5	GRCh37	DUPLICATION	KDM5A (NM_001042603) duplication (64425bp): c.672+1652_4234+155dup	PRECISE		MANUAL_OK	5to3	Duplication of 20 exons: out of frame	64425	NA	0	5	20	6
P-0000377-T03-IM3	SOMATIC	KDM5D	KDM5D	Y	Y	21877659	21879555	Intron of KDM5D(-): 34bp before exon 16	Intron of KDM5D(-): 954bp before exon 13	GRCh37	INVERSION	KDM5D (NM_001146705) inversion (1896bp): c.c.1810-954_2307-34inv	PRECISE		AUTO_OK	3to3	-	1896	NA	0	17	23	17
P-0000378-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55089162	55222302	Intron of EGFR(+): 2Kb after exon 1	Intron of EGFR(+): 457bp after exon 7	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	133140	NA	0	12	38	26
P-0000425-T01-IM3	SOMATIC	RET	CCDC6	10	10	43610450	61646250	Intron of RET(+): 266bp after exon 11	Intron of CCDC6(-): 20Kb after exon 1	GRCh37	INVERSION	RET (NM_020630) - CCDC6 (NM_005436) Inversion (c.2136+266_c.303+19630inv)	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (RET-CCDC6)	18035800	NA	0	10	21	24
P-0000889-T01-IM3	SOMATIC	RET	CCDC6	10	10	43611994	61631872	Intron of RET(+): 38bp before exon 12	Intron of CCDC6(-): 19Kb before exon 2	GRCh37	INVERSION	RET (NM_020630) - CCDC6 (NM_005436) Reciprocal Inversion:  c.2137-38_c.2137-38inv	PRECISE		AUTO_OK	3to3	Protein fusion: in frame (RET-CCDC6)	18019878	NA	0	70	83	110
P-0000944-T01-IM3	SOMATIC	EGFRvIII	30302_c.890	7	7	55179677	55223121	Intron of EGFR(+): 30Kb before exon 2	Intron of EGFR(+): 402bp before exon 8	GRCh37	DELETION	EGFRvIII (NM_005228) Deletion (c.89-30302_c.890-402del)	PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	43444	NA	0	89	102	246
P-0001100-T01-IM3	SOMATIC	ATR	ATR	3	3	142269100	142278166	Exon 14 of ATR(-)	Exon 7 of ATR(-)	GRCh37	DUPLICATION	ATR     (NM_001184) Duplication (9066bp): c.1659_c.2850dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	9066	NA	0	21	34	24
P-0001238-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55127847	55222700	Intron of EGFR(+): 41Kb after exon 1	Intron of EGFR(+): 823bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII Deletion: c.88+40789_c.890-823del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	94853	NA	0	8	195	844
P-0001281-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55192065	55223228	Intron of EGFR(+): 18Kb before exon 2	Intron of EGFR(+): 295bp before exon 8	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	31163	NA	0	24	51	30
P-0001352-T01-IM3	SOMATIC	None	None	1	1	120465426	120560448	Intron of NOTCH2(-): 25bp before exon 27	Intron of NOTCH2(-): 12Kb after exon 2	GRCh37	DELETION	None	PRECISE		AUTO_OK	3to5	Deletion of 24 exons: in frame	95022	NA	0	26	33	26
P-0001453-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1738095	1808946	Intron of TACC3(+): 534bp after exon 8	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	70851	NA	0	16	34	14
P-0001453-T01-IM3	SOMATIC	TACC3	FGFR3	7	4	1738095	1808946	Intron of TACC3(+): 534bp after exon 8	Exon 18 of FGFR3(+)	GRCh37	INSERTION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	43444	60	0	16	34	14
P-0001497-T01-IM3	SOMATIC	None	None	1	1	54540447	206945539	Intron of C1orf83(+): 6Kb after exon 3	Intron of IL10(-): 77bp after exon 1	GRCh37	INVERSION	None	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (IL10-C1orf83)	152405092	NA	0	18	20	18
P-0001582-T01-IM3	SOMATIC	None	None	7	7	55194495	55222684	Intron of EGFR(+): 15Kb before exon 2	Intron of EGFR(+): 839bp before exon 8	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	28189	NA	0	43	85	101
P-0001638-T01-IM3	SOMATIC	None	None	10	10	24752801	123242839	Intron of KIAA1217(+): 9Kb before exon 7	Intron of FGFR2(-): 373bp after exon 16	GRCh37	INVERSION	None	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-KIAA1217)	98490038	NA	0	68	76	103
P-0001654-T01-IM3	SOMATIC	FGF13	FGF13	X	X	66765285	137969651	Exon 1 of AR(+)	Intron of FGF13(-): 30Kb before exon 3	GRCh37	INVERSION	FGF13 (NM_001139500) - AR (NM_000044) inversion: c.50-29810_c.297inv	PRECISE		AUTO_OK	5to5	Protein fusion: mid-exon (FGF13-AR)	71204366	NA	0	31	49	31
P-0001654-T02-IM5	SOMATIC	NF2	NF2	22	1	30064438	12221248	Intron of NF2(+): 3bp after exon 10	IGR: 6Kb before TNFRSF1B(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(1;22)(p36.22;p21.2)(chr1:g.12221248::chr22:g.30064438 ) (Note) Note: The NF2 (NM_000268) rearrangement is a translocation which may result in a truncated NF2. The functional significance is undetermined.	PRECISE		MANUAL_OK	3to3	-	0	NA	0	76	41	76
P-0001654-T02-IM5	SOMATIC	FGF13	FGF13	X	X	66765285	137969651	Exon 1 of AR(+)	Intron of FGF13(-): 30Kb before exon 3	GRCh37	INVERSION	FGF13 (NM_001139500) - AR (NM_000044) rearrangement: c.50-29810:FGF13_c.297:ARinv (Note) Note: The FGF13 (NM_001139500) - AR (NM_000044) rearrangement is an inversion which results in the fusion of FGF13 exons 1-2 with AR exons 1-7 of AR. One of the breakpoints is within exon 1 of AR. The functional significance is undetermined.	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (FGF13-AR)	71204366	NA	0	56	127	55
P-0001710-T01-IM3	SOMATIC	APC	SRP19	5	5	112177131	112193545	Exon 16 of APC(+)	IGR: 3Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) - SRP19 (NM_001204199) deletion: c.5840_c.-3529del	PRECISE		AUTO_OK	3to5	-	16414	NA	0	5	13	5
P-0001755-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55090243	55222250	Intron of EGFR(+): 3Kb after exon 1	Intron of EGFR(+): 405bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+3185_c.889+405del	PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	132007	NA	0	69	105	163
P-0001756-T01-IM3	SOMATIC	DNMT3A	DNMT3A	2	2	25459920	25463651	Intron of DNMT3A(-): 46bp before exon 21	Intron of DNMT3A(-): 52bp before exon 18	GRCh37	DELETION	DNMT3A (NM_022552) Deletion: c.2083-52_c.2409-46del	PRECISE		AUTO_OK	3to5	Deletion of 3 exons: out of frame	3731	NA	0	25	50	30
P-0001928-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55188555	55223019	Intron of EGFR(+): 21Kb before exon 2	Intron of EGFR(+): 504bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:  c.89-21424_c.890-504del	PRECISE		AUTO_OK	3to5	Deletion of 6 exons: in frame	34464	NA	0	20	31	27
P-0002015-T02-IM5	SOMATIC	RSPRY1	NUP93	16	16	56868658	57250474	Exon 16 of NUP93(+)	Intron of RSPRY1(+): 342bp before exon 8	GRCh37	DUPLICATION	RSPRY1 (NM_133368) - NUP93 (NM_014669) rearrangement : c.1750:RSPRY1_c.770-342:NUP93dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (RSPRY1-NUP93)	381816	NA	0	80	85	80
P-0002015-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55199120	55223506	Intron of EGFR(+): 11Kb before exon 2	Intron of EGFR(+): 17bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-10859_c.890-17del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	24386	NA	0	4	5	4
P-0002073-T01-IM3	SOMATIC	FAT1	FAT1	4	4	187533043	187541777	Intron of FAT1(-): 114bp before exon 14	Exon 10 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) Deletion : c.5963_c.9464-114del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	8734	NA	0	7	22	7
P-0002083-T01-IM3	SOMATIC	NF1	NF1	17	17	29553389	46827769	Intron of NF1(+): 64bp before exon 18	IGR: 12Kb before TTLL6(-)	GRCh37	INVERSION	NF1 (NM_001042492) Inversion : c.2002-64_g.46827769inv	PRECISE		MANUAL_OK	5to5	-	17274380	NA	0	14	35	14
P-0002145-T01-IM3	SOMATIC	RET	PDCD10	10	3	43609394	167419184	Intron of RET(+): 271bp after exon 10	Intron of PDCD10(-): 3Kb after exon 3	GRCh37	TRANSLOCATION	RET (NM_020975) - PDCD10 (NM_145860) translocation:  t(10,3)(q11.21;q26.1)(chr10:g.43609394::chr3:g.167419184)	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (RET-PDCD10)	0	NA	0	28	54	27
P-0002145-T01-IM3	SOMATIC	RET	TFG	10	3	43609437	100450751	Intron of RET(+): 314bp after exon 10	Intron of TFG(+): 601bp before exon 5	GRCh37	TRANSLOCATION	RET (NM_020975) - TFG (NM_001195478) translocation:  t(10,3)(q11.21;q12.2)(chr10:g.43609437::chr3:g.100450751)	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (TFG-RET)	0	NA	0	57	72	27
P-0002146-T01-IM3	SOMATIC	CDH1	CDH1	16	16	68772285	68773373	Exon 2 of CDH1(+)	Intron of CDH1(+): 1Kb after exon 2	GRCh37	DELETION	CDH1 (NM_004360) deletion: c.134_163+1059del	PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	1088	NA	0	13	23	13
P-0002165-T01-IM3	SOMATIC	TET1	TET1	10	10	70333778	70433675	Exon 2 of TET1(+)	Intron of TET1(+): 873bp after exon 8	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	99897	NA	0	20	83	17
P-0002265-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55268897	55271568	Exon 25 of EGFR(+)	Intron of EGFR(+): 1Kb after exon 27	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	2671	NA	0	46	86	56
P-0002265-T04-IM5	SOMATIC	EGFR	EGFR	7	7	55179621	55221896	Intron of EGFR(+): 30Kb before exon 2	Intron of EGFR(+): 51bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-30358_c.889+51del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	42275	NA	0	7	13	7
P-0002265-T04-IM5	SOMATIC	EGFR	EGFR	7	7	55219816	55221812	Intron of EGFR(+): 423bp before exon 6	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.629-423_856del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1996	NA	0	18	37	18
P-0002265-T04-IM5	SOMATIC	EGFR	EGFR	7	7	55268128	55271390	Intron of EGFR(+): 22bp after exon 24	Intron of EGFR(+): 1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+22_c.3271+1072del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	3262	NA	0	9	16	5
P-0002572-T01-IM3	SOMATIC	RIMBP2	INPP4B	12	4	131062050	143130066	IGR: 60Kb after RIMBP2(-)	Exon 14 of INPP4B(-)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	-	0	NA	0	33	52	49
P-0002572-T01-IM3	SOMATIC	RIMBP2	INPP4B	12	4	131062051	143130062	IGR: 60Kb after RIMBP2(-)	Exon 14 of INPP4B(-)	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	27	49
P-0002582-T01-IM3	SOMATIC	ZFP90	CDH1	16	16	68532791	68849593	IGR: 41Kb before ZFP90(+)	Exon 10 of CDH1(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	316802	NA	0	32	49	38
P-0002582-T01-IM3	SOMATIC	MIR1281	EP300	22	22	41487340	41562642	Promoter of MIR1281(+): 1Kb from tx start	Exon 23 of EP300(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MIR1281-EP300)	75302	NA	0	15	27	16
P-0002584-T01-IM3	SOMATIC	NBN	NBN	8	8	90966043	90980052	Intron of NBN(-): 124bp before exon 11	Intron of NBN(-): 3Kb after exon 7	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	14009	NA	0	21	30	19
P-0002610-T01-IM3	SOMATIC	FGFR3	JAKMIP1	4	4	1808734	6089676	Intron of FGFR3(+): 73bp after exon 17	Intron of JAKMIP1(-): 2Kb before exon 4	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (FGFR3-JAKMIP1)	4280942	NA	0	35	49	56
P-0002613-T01-IM3	SOMATIC	ALK	EML4	2	2	29447199	42528199	Intron of ALK(-): 805bp before exon 20	Intron of EML4(+): 182bp before exon 13	GRCh37	INVERSION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13081000	NA	0	5	11	5
P-0002671-T01-IM3	SOMATIC	NTRK3	ETV6	15	12	88505784	12035813	Intron of NTRK3(-): 22Kb before exon 14	Intron of ETV6(+): 2Kb before exon 6	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	13	20	17
P-0002685-T01-IM3	SOMATIC	NF1	NF1	17	17	29586168	29596951	Intron of NF1(+): 21bp after exon 32	Intron of NF1(+): 5Kb after exon 35	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	10783	NA	0	47	66	58
P-0002754-T01-IM3	SOMATIC	CSF1R	CSF1R	5	5	149453022	149457946	Exon 7 of CSF1R(-)	Intron of CSF1R(-): 135bp before exon 5	GRCh37	DELETION		IMPRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	4924	NA	0	5	0	5
P-0002758-T01-IM3	SOMATIC	STK11	MIDN	19	19	1219420	1249122	Intron of STK11(+): 8bp after exon 3	5-UTR of MIDN(+): 1Kb before coding start	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Transcript fusion (STK11-MIDN)	29702	NA	0	10	28	11
P-0002860-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55119201	55222768	Intron of EGFR(+): 32Kb after exon 1	Intron of EGFR(+): 755bp before exon 8	GRCh37	DELETION		IMPRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	103567	NA	0	3	0	3
P-0002862-T01-IM3	SOMATIC	TACC3	FGFR3	4	4	1739781	1808873	Intron of TACC3(+): 352bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69092	NA	0	97	167	182
P-0002891-T01-IM3	SOMATIC	NF1	NF1	17	17	29546132	29553267	Exon 14 of NF1(+)	Intron of NF1(+): 186bp before exon 18	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	7135	NA	0	6	25	7
P-0002936-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55188681	55222377	Intron of EGFR(+): 21Kb before exon 2	Intron of EGFR(+): 532bp after exon 7	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	33696	NA	0	3	3	3
P-0002998-T01-IM3	SOMATIC	SEC61G	EGFR	7	7	54839350	55087025	IGR: 19Kb before SEC61G(-)	Exon 1 of EGFR(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	247675	NA	0	10	21	11
P-0003008-T01-IM3	SOMATIC	SMAD4	SMAD4	18	18	48573692	48584923	Intron of SMAD4(+): 27bp after exon 2	Intron of SMAD4(+): 97bp after exon 7	GRCh37	DUPLICATION		PRECISE		MANUAL_OK	5to3	Duplication of 5 exons: out of frame	11231	NA	0	6	9	6
P-0003078-T01-IM5	SOMATIC	RNF43	RNF43	17	17	56433440	56435041	Intron of RNF43(-): 1Kb before exon 10	Exon 9 of RNF43(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1601	NA	0	33	34	35
P-0003170-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55269016	55270495	Exon 25 of EGFR(+)	Intron of EGFR(+): 177bp after exon 27	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1479	NA	0	6	6	6
P-0003664-T01-IM5	SOMATIC	c.4929+549	c.4929+549	7	7	138552172	140482817	Intron of KIAA1549(-): 549bp after exon 15	Intron of BRAF(-): 4bp after exon 10	GRCh37	DUPLICATION	c.4929+549:KIAA1549_c.1314+4:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (KIAA1549-BRAF)	1930645	NA	0	10	26	12
P-0003783-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55092872	55223428	Intron of EGFR(+): 6Kb after exon 1	Intron of EGFR(+): 95bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17914_c.890-295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	130556	NA	0	18	253	1686
P-0003783-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55092872	55223428	Intron of EGFR(+): 6Kb after exon 1	Intron of EGFR(+): 95bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-17914_c.890-295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	130556	NA	1	102	881	2380
P-0003827-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739661	1808714	Intron of TACC3(+): 232bp after exon 10	Intron of FGFR3(+): 53bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused to TACC3 exons 11-16): c.1941+232:TACC3_c.2274+53:FGFR3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	69053	NA	0	12	20	12
P-0003871-T01-IM5	SOMATIC	CNTROB	STAT5B	17	17	7850403	40355053	Intron of CNTROB(+): 486bp before exon 14	Intron of STAT5B(-): 227bp before exon 17	GRCh37	INVERSION	CNTROB (NM_001037144) - STAT5B (NM_012448) rearrangement (32504650 bp): c.1994-486:CNTROB_c.2078-227:STAT5Binv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (CNTROB-STAT5B)	32504650	NA	0	10	7	6
P-0003871-T01-IM5	SOMATIC	NCOR1	NCOR1	17	17	16089933	77834316	Exon 3 of NCOR1(-)	IGR: 27Kb before CBX4(-)	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.177:NCOR1_chr17g.77834316inv	PRECISE		MANUAL_OK	3to3	-	61744383	NA	0	102	104	153
P-0003871-T01-IM5	SOMATIC	MLL3	MLL3	7	7	119462033	151855794	IGR: 452Kb before KCND2(+)	Intron of MLL3(-): 154bp after exon 44	GRCh37	INVERSION	MLL3 (NM_170606) rearrangement: chr7g.19462033_c.11670+154:MLL3inv	PRECISE		MANUAL_OK	5to5	-	32393761	NA	0	15	24	15
P-0003872-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140482692	140506747	Intron of BRAF(-): 129bp after exon 10	Intron of BRAF(-): 1Kb after exon 5	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.711+1013_c.1314+129 :BRAFdel	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons: in frame	24055	NA	0	34	49	39
P-0003970-T01-IM5	SOMATIC	ROS1	EZR	6	6	117649698	159191654	Intron of ROS1(-): 794bp after exon 32	Intron of EZR(-): 142bp after exon 9	GRCh37	DELETION	ROS1 (NM_002944) - EZR ( NM_003379 ) rearrangement:  c.1090+142C:EZR_c.5366+794T:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EZR-ROS1)	41541956	NA	0	24	35	30
P-0003970-T02-IM5	SOMATIC	EZR	ROS1	6	6	117649698	159191654	Intron of ROS1(-): 794bp after exon 32	Intron of EZR(-): 142bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: (EZR exons 1 to 9 fused ROS1 exons 33 to 43): c.1090+142:EZR_c.5366_794:ROS1del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EZR-ROS1)	41541956	NA	0	102	160	309
P-0004038-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55203434	55221833	Intron of EGFR(+): 7Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION		PRECISE		AUTO_OK	3to5	Deletion within transcript: mid-exon	18399	NA	0	39	295	297
P-0004119-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55180756	55223453	Intron of EGFR(+): 29Kb before exon 2	Intron of EGFR(+): 70bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-29223_890-70del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	42697	NA	0	17	17	15
P-0004174-T01-IM5	SOMATIC	RAD52	RAD52	12	12	1023206	1030646	Exon 11 of RAD52(-)	Intron of RAD52(-): 4Kb after exon 7	GRCh37	INVERSION	RAD52 (NM_134424) rearrangement: c.543+3970_1049inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	7440	NA	0	5	6	5
P-0004224-T01-IM5	SOMATIC	RBM10	RBM10	X	6	47034490	21827554	Exon 6 of RBM10(+)	5-UTR of FLJ22536(+): 367Kb before coding start	GRCh37	TRANSLOCATION	RBM10 (NM_001204468) Rearrangement : t(X;6)(Xp11.23;6p22.3)(chrX:g.47034490::chr6:g.21827554)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (RBM10-FLJ22536)	0	NA	0	79	41	79
P-0004245-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55205938	55222794	Intron of EGFR(+): 4Kb before exon 2	Intron of EGFR(+): 729bp before exon 8	GRCh37	DELETION	EGFR (NM_005228), vIII intragenic deletion: c.89-4041_c.890-729del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	16856	NA	0	3	4	3
P-0004245-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268609	55270517	Intron of EGFR(+): 272bp before exon 25	Intron of EGFR(+): 199bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-272_c.3271+199del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	1908	NA	0	102	116	185
P-0004286-T01-IM5	SOMATIC	FGFR2	FGFR2	10	10	123240290	123264091	Intron of FGFR2(-): 755bp before exon 18	Intron of FGFR2(-): 636bp before exon 9	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement : c.1288-636_2302-755inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	23801	NA	0	102	108	242
P-0004329-T01-IM5	SOMATIC	FOXP1	FOXP1	3	3	71096283	71376425	Intron of FOXP1(-): 37bp before exon 10	5-UTR of FOXP1(-): 129Kb before coding start	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.511-37_chr3:g.71376425del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	280142	NA	0	21	19	20
P-0004518-T01-IM5	SOMATIC	RAD51	RAD51	15	15	41019283	41021006	Intron of RAD51(+): 2Kb before exon 7	Exon 7 of RAD51(+)	GRCh37	DUPLICATION	RAD51 (NM_002875) Rearrangement :  c.531-1626_628dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	1723	NA	0	24	30	24
P-0004617-T01-IM5	SOMATIC	NFE2L2	NFE2L2	2	2	178098089	178103137	Intron of NFE2L2(-): 22bp before exon 3	Intron of NFE2L2(-): 4Kb before exon 2	GRCh37	DELETION	NFE2L2(NM_006164) Rearrangement : c.313-22_46-4138del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	5048	NA	0	29	33	29
P-0004664-T01-IM5	SOMATIC	ZNF444	EWSR1	22	19	29683072	56671209	Exon 6 of EWSR1(+)	Exon 5 of ZNF444(+)	GRCh37	TRANSLOCATION	ZNF444 (NM_018337) - EWSR1 (NM_013986) fusion: t(19;22) (q13.43;q12.2)(chr19:g.56671209::chr22:g.29683072)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (ZNF444-EWSR1)	0	NA	0	95	0	93
P-0004700-T02-IM5	SOMATIC	GPATCH8	ERBB2	17	17	37872605	42498763	Exon 13 of ERBB2(+)	Intron of GPATCH8(-): 3Kb after exon 6	GRCh37	INVERSION	GPATCH8 (NM_001002909) - ERBB2 (NM_004448) Rearrangement :c.492+2954:GPATCH8_c.1565:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (GPATCH8-ERBB2)	4626158	NA	0	23	45	22
P-0005051-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55201630	55222396	Intron of EGFR(+): 8Kb before exon 2	Intron of EGFR(+): 551bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-8349_c.889+551del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	20766	NA	0	101	519	573
P-0005128-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1741115	1808814	Intron of TACC3(+): 314bp before exon 11	Intron of FGFR3(+): 29bp before exon 18	GRCh37	DUPLICATION	FGFR3(NM_000142) -TACC3 (NM_006342) Fusion (FGFR3 exon 17 fused to TACC3 exon 11)  : c.2275-29:FGFR3_c.1942-314:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (FGFR3-TACC3)	67699	NA	0	12	33	12
P-0005361-T02-IM5	SOMATIC	TLL1	POLE	12	4	133202781	167006080	Exon 46 of POLE(-)	Intron of TLL1(+): 6Kb before exon 19	GRCh37	TRANSLOCATION	TLL1 (NM_012464) - POLE  (NM_006231) Rearrangement :  t(4;12)(4q32.3;12q24.33)(chr4:g.167006080::chr12:g.133202781)	PRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (TLL1-POLE)	0	NA	0	31	19	31
P-0005361-T02-IM5	SOMATIC	FGFR3	TACC3	4	4	1739299	1809059	Intron of TACC3(+): 26bp before exon 10	3-UTR of FGFR3(+): 70bp after coding stop	GRCh37	DUPLICATION	FGFR3 (NM_000142) -TACC3 (NM_006342) Rearrangement : c.*70:FGFR3_c.1837-26:TACC3dup	PRECISE		MANUAL_OK	5to3	-	69760	NA	0	7	11	6
P-0005493-T01-IM5	SOMATIC	PNPLA6	POLD1	19	19	7607490	50916627	Exon 11 of PNPLA6(+)	Intron of POLD1(+): 56bp before exon 18	GRCh37	DELETION	PNPLA6 (NM_001166111) - POLD1 (NM_002691) rearrangement: c.1323:PNPLA6_c.2155-56:POLD1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (PNPLA6-POLD1)	43309137	NA	0	102	65	110
P-0005493-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11132542	13004048	Exon 18 of SMARCA4(+)	Intron of GCDH(+): 249bp before exon 6	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement (1871506 bp): c.2758:SMARCA4_c.335-249:GCDHinv	PRECISE		MANUAL_OK	3to3	Antisense fusion	1871506	NA	0	102	127	182
P-0005493-T01-IM5	SOMATIC	CIC	POLD1	19	19	42794881	50915845	Exon 10 of CIC(+)	Intron of POLD1(+): 838bp before exon 18	GRCh37	INVERSION	CIC (NM_015125) - POLD1 (NM_002691)  rearrangement (8120964 bp): c.2155-838:POLD1_c.1961:CICinv	PRECISE		MANUAL_OK	3to3	Antisense fusion	8120964	NA	0	102	78	99
P-0005539-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55216873	55222597	Intron of EGFR(+): 2Kb before exon 5	Intron of EGFR(+): 752bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.560-2114_c.889+752del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	5724	NA	0	101	494	905
P-0005725-T01-IM5	SOMATIC	MITF	MITF	3	3	69988353	69990979	Intron of MITF(+): 21bp after exon 4	Intron of MITF(+): 497bp after exon 5	GRCh37	DELETION	MITF (NM_198159)  Rearrangement: c.666+21_762+497del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2626	NA	0	46	50	46
P-0005748-T01-IM5	SOMATIC	NCOA4	RET	10	10	43611325	51584356	Intron of RET(+): 707bp before exon 12	Intron of NCOA4(+): 260bp before exon 9	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion : c.763-260:NCOA4_c.2137-707:RETdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (NCOA4-RET)	7973031	NA	0	4	48	2
P-0005877-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55207884	55221992	Intron of EGFR(+): 2Kb before exon 2	Intron of EGFR(+): 147bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2095_889+147del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	14108	NA	0	102	176	155
P-0005963-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55177758	55222556	Intron of EGFR(+): 32Kb before exon 2	Intron of EGFR(+): 711bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-32221_889+711del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	44798	NA	0	62	739	2105
P-0005969-T01-IM5	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21965671	21970870	Promoter of C9orf53(+): 1Kb from tx start	Intron of CDKN2A(-): 31bp after exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement (g.9:21965671_c.*101+31:CDKN2Adel)	PRECISE		MANUAL_OK	3to5	Antisense fusion	5199	NA	0	73	55	71
P-0005970-T03-IM5	SOMATIC	DICER1	DICER1	14	14	95557702	95560224	Exon 26 of DICER1(-)	Intron of DICER1(-): 1bp after exon 25	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.5364+1G_c.5365del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2522	NA	0	78	77	75
P-0006045-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55184888	55223491	Intron of EGFR(+): 25Kb before exon 2	Intron of EGFR(+): 32bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-25091_c.890-32del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	38603	NA	0	102	821	2014
P-0006045-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55184888	55223491	Intron of EGFR(+): 25Kb before exon 2	Intron of EGFR(+): 32bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2509_c.890-32del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	38603	NA	0	102	740	1897
P-0006054-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55209339	55223371	Intron of EGFR(+): 640bp before exon 2	Intron of EGFR(+): 152bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-640_c.629+3130del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	14032	NA	0	9	15	8
P-0006416-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55102775	55221792	Intron of EGFR(+): 16Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion :  c.88+15717_836del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	119017	NA	0	101	593	965
P-0006416-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55102775	55221792	Intron of EGFR(+): 16Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+15717_836del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	119017	NA	0	102	530	918
P-0006437-T01-IM5	SOMATIC	AKT3	AKT3	1	1	243794255	243800940	Intron of AKT3(-): 7Kb after exon 5	Exon 5 of AKT3(-)	GRCh37	DELETION	AKT3 (NM_005465) rearrangement : c.534_561+6658del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	6685	NA	0	19	31	19
P-0006621-T01-IM5	SOMATIC	GRIP1	TCF7L2	12	10	66756235	114900968	Intron of GRIP1(-): 9Kb before exon 22	Exon 5 of TCF7L2(+)	GRCh37	TRANSLOCATION	GRIP1 (NM_021150) - TCF7L2 (NM_001146274) rearrangement : t(10;12)(q25.3;q14.3)(chr10:g.114900968::chr12:g.66756235)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (GRIP1-TCF7L2)	0	NA	0	102	361	598
P-0006714-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140489148	140582236	Intron of BRAF(-): 2Kb before exon 9	Intron of BRAF(-): 32Kb before exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.139-32224_c.1141-1764del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: in frame	93088	NA	0	5	6	5
P-0006879-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739625	1808967	Intron of TACC3(+): 196bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) Fusion (FGFR3 exons 1 to 18 fused with TACC3 exons 11-16 ) : c.2399:FGFR3_c.1941+196:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69342	NA	0	5	5	5
P-0006953-T01-IM5	SOMATIC	ETV6	ETV6	12	12	11989656	12015285	Intron of ETV6(+): 2Kb before exon 3	Intron of ETV6(+): 7Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.164-2418_c.464-7073dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons: in frame	25629	NA	0	102	74	140
P-0007504-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55102452	55222834	Intron of EGFR(+): 15Kb after exon 1	Intron of EGFR(+): 689bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII deletion: c.88+15394_c.890-689del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	120382	NA	0	9	18	9
P-0007504-T02-IM5	SOMATIC	ARID1B	THBS2	6	6	157517427	169641376	Exon 16 of ARID1B(+)	Intron of THBS2(-): 481bp after exon 6	GRCh37	DELETION	ARID1B (NM_020732) - THBS2 (NM_003247) rearrangement: c.3817:ARID1B_c.891+481:THBS2del	PRECISE		MANUAL_OK	3to5	Antisense fusion	12123949	NA	0	66	65	66
P-0007516-T01-IM5	SOMATIC	NCOA3	ESR1	20	6	46266556	152259319	Intron of NCOA3(+): 29bp after exon 13	Intron of ESR1(+): 6Kb before exon 6	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) - ESR1 (NM_001122740) rearrangement  :  : t(20;6)(chr20q13.12;chr6q25.1)(chr20:g.46266556 ::chr6:g.152259319)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (NCOA3-ESR1)	0	NA	0	39	23	39
P-0007751-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55198845	55222744	Intron of EGFR(+): 11Kb before exon 2	Intron of EGFR(+): 779bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-11134_c.890-779del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	23899	NA	0	101	388	1277
P-0007755-T02-IM5	SOMATIC	TRPM8	NTRK1	2	1	234866124	156845664	Intron of TRPM8(+): 2Kb after exon 11	Intron of NTRK1(+): 206bp after exon 12	GRCh37	TRANSLOCATION	TRPM8 (NM_024080) - NTRK1 (NM_002529) rearrangement: t(1;2)(q23.1; q27.1)(chr1:g.156845664::chr2:g.234866124)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TRPM8-NTRK1)	0	NA	0	10	5	9
P-0008080-T01-IM5	SOMATIC	IP6K1	SETD2	3	3	47103837	49814923	Intron of SETD2(-): 1bp before exon 14	5-UTR of IP6K1(-): 29Kb before coding start	GRCh37	DELETION	IP6K1 (NM_153273) - SETD2 (NM_014159) rearrangement: c.-129+8864:IP6K1_c:6110-1:SETD2del	PRECISE		MANUAL_OK	3to5	Transcript fusion (IP6K1-SETD2)	2711086	NA	0	46	56	42
P-0008103-T01-IM5	SOMATIC	GATA3	GATA3	10	10	8111595	9186062	Intron of GATA3(+): 34bp after exon 5	IGR: 1Mb before GATA3(+)	GRCh37	DELETION	GATA3 (NM_002051) rearrangement : c.1047+34:GATA3_chr10:g.9186062del	PRECISE		MANUAL_OK	3to5	-	1074467	NA	0	77	59	75
P-0008246-T02-IM5	SOMATIC	NTRK1	DDR2	1	1	156844161	162609545	Intron of NTRK1(+): 14bp before exon 9	5-UTR of DDR2(+): 79Kb before coding start	GRCh37	INVERSION	NTRK1 (NM_002529) - DDR2 (NM_006182) rearrangement : c.1178-14:NTRK1_c.-192+7124:DDR2inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	5765384	NA	0	42	51	42
P-0008257-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55131210	55222138	Intron of EGFR(+): 44Kb after exon 1	Intron of EGFR(+): 293bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion:c.88+44152_c.889+293del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	90928	NA	0	3	4	3
P-0008290-T01-IM5	SOMATIC	BTK	BTK	X	X	100608926	100618441	Exon 17 of BTK(-)	Intron of BTK(-): 764bp before exon 6	GRCh37	DUPLICATION	BTK (NM_000061) rearrangement: c.392-764_c.1682dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	9515	NA	0	32	32	29
P-0008715-T01-IM5	SOMATIC	ARID1A	ARID1A	1	1	27095896	27106281	Intron of ARID1A(+): 1Kb after exon 11	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3198+1406_c.5892del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	10385	NA	0	80	56	75
P-0008715-T01-IM5	SOMATIC	STK11	STK11	19	19	1220618	1222740	Exon 5 of STK11(+)	Intron of STK11(+): 244bp before exon 8	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.636_c.921-244del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2122	NA	0	31	51	29
P-0008789-T01-IM5	SOMATIC	PHTF2	BRAF	7	7	77583808	140489236	Intron of PHTF2(+): 367bp before exon 18	Intron of BRAF(-): 2Kb before exon 9	GRCh37	INVERSION	PHTF2 (NM_001127358) - BRAF (NM_004333) rearrangement: c.2224-367:PHTF2_c.1141-1852:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (PHTF2-BRAF)	62905428	NA	0	86	77	86
P-0008873-T01-IM5	SOMATIC	EPHB1	PTPRZ1	7	3	121568752	134670230	Intron of PTPRZ1(+): 477bp after exon 2	Exon 3 of EPHB1(+)	GRCh37	TRANSLOCATION	EPHB1 (NM_004441)  - PTPRZ1 (NM_002851)  Rearrangement :  t(3;7)(3q22.2;7q31.32)(chr3:g.134670230::chr7:g.121568752)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	26	14	25
P-0008928-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39886642	42867842	Intron of ERG(-): 61Kb after exon 3	Intron of TMPRSS2(-): 1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion ()TMPRSS2 exons 1-2 fused with ERG exons 4-11) :  c.127-1337:TMPRSS2_c.39+60944:ERGdel	IMPRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TMPRSS2-ERG)	2981200	NA	0	59	0	56
P-0008942-T01-IM5	SOMATIC	PTCH1	STRN	9	2	98215861	37116407	Exon 20 of PTCH1(-)	Intron of STRN(-): 2Kb before exon 8	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) - STRN (NM_003162) Rearrangement : t(2;9)(2p25.1;9q22.32)(chr2:g.7116407::chr9:g.98215861)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (PTCH1-STRN)	0	NA	0	17	0	16
P-0009563-T01-IM5	SOMATIC	C19orf47	AKT2	19	19	40742307	40846773	Intron of AKT2(-): 15bp before exon 10	5-UTR of C19orf47(-): 5Kb before coding start	GRCh37	DELETION	C19orf47 (NM_001256441) - AKT2 (NM_001626) Rearrangement : c.19+973:NM_001256441_c.832-15AKT2del	PRECISE		MANUAL_OK	3to5	Transcript fusion (C19orf47-AKT2)	104466	NA	0	56	57	52
P-0009647-T01-IM5	SOMATIC	TUBGCP3	BRCA2	13	13	32906232	113176627	Intron of BRCA2(+): 177bp before exon 10	Intron of TUBGCP3(-): 7bp after exon 14	GRCh37	INVERSION	TUBGCP3 (NM_006322) - BRCA2 (NM_000059) rearrangement: c.1745+7:TUBGCP3_c.794-177:BRCA2inv	PRECISE		MANUAL_OK	5to5	Protein fusion: out of frame (TUBGCP3-BRCA2)	80270395	NA	0	7	9	5
P-0009647-T01-IM5	SOMATIC	TP63	LEPREL1	3	3	189456639	189799964	Intron of TP63(+): 76bp after exon 3	Intron of LEPREL1(-): 38Kb after exon 1	GRCh37	INVERSION	TP63 (NM_003722) - LEPREL1 (NM_018192) rearrangement: c.324+76:TP63_c.480+38077:LEPREL1inv	IMPRECISE		MANUAL_OK	3to3	Protein fusion: in frame (TP63-LEPREL1)	343325	NA	0	13	0	10
P-0009873-T01-IM5	SOMATIC	EGFR VIII	EGFR VIII	7	7	55201878	55222782	Intron of EGFR(+): 8Kb before exon 2	Intron of EGFR(+): 741bp before exon 8	GRCh37	DELETION	EGFR VIII (NM_005228) Intragenic deletion : c.89-8101_890-741del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	20904	NA	0	15	22	14
P-0009876-T01-IM5	SOMATIC	TGFBR2	TGFBR2	3	3	24649275	30732923	IGR: 491Kb before THRB(-)	Exon 7 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement : c.1611:TGFBR2_chr3:g.24649275del	PRECISE		MANUAL_OK	3to5	-	6083648	NA	0	27	46	27
P-0009877-T02-IM5	SOMATIC	BRAF	BRAF	7	7	140482249	140549720	Intron of BRAF(-): 572bp after exon 10	Intron of BRAF(-): 191bp after exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.240+191_c.1314+572del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons: in frame	67471	NA	0	79	67	77
P-0009940-T01-IM5	SOMATIC	MTOR	MTOR	1	1	11176756	11300558	Intron of MTOR(-): 305bp after exon 50	Exon 11 of MTOR(-)	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.1588_c.7016+305del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	123802	NA	0	13	20	13
P-0010348-T01-IM5	SOMATIC	EP300	EP300	22	22	41487953	41489010	Promoter of MIR1281(+): 564bp from tx start	Exon 1 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement : c.-1056_2del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (MIR1281-EP300)	1057	NA	0	8	20	8
P-0010348-T01-IM5	SOMATIC	AMER1	AMER1	X	X	63410912	63442748	Exon 2 of FAM123B(-)	IGR: 1Kb before ASB12(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement : c.2255:AMER1_chrX:g.63442748del	PRECISE		MANUAL_OK	3to5	-	31836	NA	0	28	48	28
P-0010483-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55231183	55238985	Intron of EGFR(+): 243bp before exon 14	Intron of EGFR(+): 79bp after exon 16	GRCh37	DELETION	EGFR (NM_005228) Rearrangement :  c.1632-243_1919+79del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: in frame	7802	NA	0	28	35	28
P-0010534-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739140	1808859	Intron of TACC3(+): 85bp after exon 9	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 fused to TACC3 exons 10-16): c.2363:FGFR3 _c.1784:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69719	NA	0	102	99	114
P-0010743-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55173278	55223328	Intron of EGFR(+): 37Kb before exon 2	Intron of EGFR(+): 195bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.89-36701_890-195del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	50050	NA	0	102	76	128
P-0011119-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55161342	55223228	Intron of EGFR(+): 49Kb before exon 2	Intron of EGFR(+): 295bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-48637_c.890-295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	61886	NA	0	102	644	1777
P-0011119-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55161342	55223228	Intron of EGFR(+): 49Kb before exon 2	Intron of EGFR(+): 295bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-48637_c.890-295del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	61886	NA	0	100	345	1269
P-0011199-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55094939	55221922	Intron of EGFR(+): 8Kb after exon 1	Intron of EGFR(+): 77bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.88+7881_889+77del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	126983	NA	0	99	359	463
P-0011202-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55114900	55223033	Intron of EGFR(+): 28Kb after exon 1	Intron of EGFR(+): 490bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.88+27842_890-490del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	108133	NA	0	5	6	3
P-0011202-T02-IM5	SOMATIC	EGFR	EGFR	7	7	55114900	55223033	Intron of EGFR(+): 28Kb after exon 1	Intron of EGFR(+): 490bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+27842_c.890-490del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	108133	NA	0	7	4	6
P-0011395-T02-IM5	SOMATIC	ARID1B	ARID1B	6	6	157527465	157544399	Exon 20 of ARID1B(+)	IGR: 12Kb after ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5016_chr6:g.157544399del	PRECISE		MANUAL_OK	3to5	-	16934	NA	0	10	13	9
P-0011423-T01-IM5	SOMATIC	ATF1	EWSR1	22	12	29686903	51199798	Intron of EWSR1(+): 648bp before exon 8	Intron of ATF1(+): 3Kb before exon 4	GRCh37	TRANSLOCATION	ATF1 (NM_005171) - EWSR1 (NM_013986) fusion (ATF1 exons 1-3 with EWSR1 exons 10-18): t(12;22)( q13.12;q12.2)(chr12:g.51199798::chr22:g.29686903)	IMPRECISE		MANUAL_OK	5to3	Protein fusion: in frame (ATF1-EWSR1)	0	NA	0	65	0	41
P-0011503-T01-IM5	SOMATIC	FGFR3	TACC3	4	4	1739130	1808967	Intron of TACC3(+): 75bp after exon 9	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-18 with TACC3 exons 10-16): c.2399:FGFR3_c.1836+75:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR3-TACC3)	69837	NA	0	16	18	16
P-0012241-T01-IM5	SOMATIC	PAX5	PAX5	9	9	36970568	37015039	Intron of PAX5(-): 4Kb before exon 6	Exon 3 of PAX5(-)	GRCh37	INVERSION	PAX5 (NM_016734) Rearrangement: c.365_c.605-3847inv	PRECISE		MANUAL_OK	3to3	-	44471	NA	0	43	48	43
P-0012400-T01-IM5	SOMATIC	SMARCA4	SMARCA4	19	19	11144964	11147873	Intron of SMARCA4(+): 88bp after exon 26	Intron of SMARCA4(+): 2Kb after exon 27	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3951+88_c.4170+2065del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: in frame	2909	NA	0	21	25	20
P-0012400-T01-IM5	SOMATIC	LATS1	GLIS3	9	6	3858763	150001247	Intron of GLIS3(-): 3Kb before exon 9	Exon 5 of LATS1(-)	GRCh37	TRANSLOCATION	LATS1 (NM_004690) - GLIS3 (NM_001042413) rearrangement: t(6;9)(q25.1;p24.2)(chr6:g.150001247::chr9:g.3858763)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (LATS1-GLIS3)	0	NA	0	11	4	10
P-0012421-T01-IM5	SOMATIC	NAB2	STAT6	12	12	57486509	57492049	Intron of NAB2(+): 145bp after exon 3	Intron of STAT6(-): 239bp after exon 19	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-3 fused in-frame with STAT6 exons 20-22): c.1091+145:NAB2_c.2159+239:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5540	NA	0	54	133	54
P-0012536-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55091253	55219982	Intron of EGFR(+): 4Kb after exon 1	Intron of EGFR(+): 257bp before exon 6	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.88+4195_c.629-257del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons: in frame	128729	NA	0	99	71	35
P-0012681-T01-IM5	SOMATIC	MAPK3	MAPK3	16	16	30133244	31185106	Exon 2 of MAPK3(-)	IGR: 6Kb before FUS(+)	GRCh37	DUPLICATION	MAPK3 (NM_002746) rearrangement: chr16:g.31185106_c.254dup	PRECISE		MANUAL_OK	5to3	-	1051862	NA	0	89	94	88
P-0012681-T01-IM5	SOMATIC	DNAJB1	DNAJB1	19	12	14627717	57375081	Exon 2 of DNAJB1(-)	IGR: 13Kb before GPR182(+)	GRCh37	TRANSLOCATION	DNAJB1 (NM_006145) rearrangement: t(12;19)(q13.3;p13.12)(chr12:g.57375081::chr19:g.14627717)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	75	44	73
P-0012681-T01-IM5	SOMATIC	STK11	DOCK6	19	19	1223242	11319401	Intron of STK11(+): 71bp after exon 8	Exon 39 of DOCK6(-)	GRCh37	INVERSION	STK11 (NM_000455) - DOCK6 (NM_02081) rearrangement: c.1108+71:STK11_c.5049:DOCK6inv	IMPRECISE		MANUAL_OK	3to3	Protein fusion: mid-exon (STK11-DOCK6)	10096159	NA	0	23	0	23
P-0012694-T01-IM5	SOMATIC	EWSR1	ATF1	22	12	29687578	51202318	Exon 8 of EWSR1(+)	Intron of ATF1(+): 921bp before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-10 with ATF1 exons 4-7): t(12;22)(q13.12;q12.2)(chr12:g.51202318::chr22:g.29687578)	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (EWSR1-ATF1)	0	NA	0	12	19	12
P-0012696-T01-IM5	SOMATIC	ARID5B	ARID5B	10	10	63659628	63661287	Promoter of ARID5B(+): 1Kb from tx start	5-UTR of ARID5B(+): 182bp before coding start	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.-1841_c.-182del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1659	NA	0	15	15	14
P-0012696-T01-IM5	SOMATIC	TCF3	TCF3	19	19	1615289	1622586	Exon 18 of TCF3(-)	Intron of TCF3(-): 172bp before exon 8	GRCh37	DUPLICATION	TCF3 (NM_001136139) rearrangement: c.550-172_c.1586+396dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	7297	NA	0	39	56	38
P-0012696-T01-IM5	SOMATIC	PTPRS	PTPRS	19	8	5210677	61237662	Intron of PTPRS(-): 13bp after exon 25	IGR: 44Kb after CA8(-)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(8;19)(q12.1;p13.3)(chr8:g.61237662::chr19:g.5210677)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	33	0	30
P-0012770-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55208050	55222428	Intron of EGFR(+): 2Kb before exon 2	Intron of EGFR(+): 583bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-1929_c.889+583del	IMPRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	14378	NA	0	102	0	596
P-0012884-T01-IM5	SOMATIC	PWWP2A	BRAF	7	5	140495243	159539324	Intron of BRAF(-): 976bp before exon 8	Intron of PWWP2A(-): 6Kb after exon 1	GRCh37	TRANSLOCATION	PWWP2A (NM_001130864) - BRAF(NM_004333) Rearrangement : t(5;7)(q33.3;q34)(chr5:g.159539324::chr7:g.140495243)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (PWWP2A-BRAF)	0	NA	0	47	36	35
P-0012947-T01-IM5	SOMATIC	CDKN2Ap14ARF	CDKN2Ap14ARF	9	9	21965059	21968623	Promoter of C9orf53(+): 2Kb from tx start	Intron of CDKN2Ap14ARF(-): 382bp before exon 3	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) rearrangement: c.*102-382_c.*3284del	PRECISE		MANUAL_OK	5to5	-	3564	NA	0	14	4	11
P-0012947-T01-IM5	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21971024	22056567	Promoter of C9orf53(+): 2Kb from tx start	Intron of CDKN2Ap16INK4A(-): 382bp before exon 3	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.458-382_c.*3169del	PRECISE		MANUAL_OK	3to5	-	3564	NA	0	14	4	11
P-0013025-T01-IM5	SOMATIC	TBX3	TBX3	12	12	115120795	124583968	Exon 1 of TBX3(-)	IGR: 126Kb before ZNF664(+)	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: chr12:g.124583968_c.211:TBX3inv	PRECISE		MANUAL_OK	5to5	-	9463173	NA	0	24	41	24
P-0013204-T01-IM5	SOMATIC	ERRFI1	CAMTA1	1	1	7545397	8075555	Intron of CAMTA1(+): 17Kb after exon 6	Exon 2 of ERRFI1(-)	GRCh37	DELETION	ERRFI1 (NM_018948) - CAMTA1 (NM_015215) rearrangement: c.125:ERRFI1_c.510+17436:CAMTA1del	PRECISE		MANUAL_OK	3to5	Antisense fusion	530158	NA	0	60	65	60
P-0013529-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55194214	55223417	Intron of EGFR(+): 16Kb before exon 2	Intron of EGFR(+): 106bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-15765_c.890-106del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	29203	NA	0	100	315	783
P-0013559-T01-IM5	SOMATIC	AFAP1	NTRK1	4	1	7852375	156844093	Intron of AFAP1(-): 5Kb after exon 4	Intron of NTRK1(+): 82bp before exon 9	GRCh37	TRANSLOCATION	AFAP1(NM_001134647) - NTRK1(NM_002529) Rearrangement : t(1;4)(q23.1;p16.1)(chr1:g.156844093::chr4:g.7852375)	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (AFAP1-NTRK1)	0	NA	0	102	144	113
P-0013559-T01-IM5	SOMATIC	PIK3R1	PIK3R1	7	5	66094856	67588190	Intron of KCTD7(+): 661bp after exon 1	Intron of PIK3R1(+): 1bp after exon 2	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) Rearrangement : t(5,7)(q13.1,q11.21)(chr5:g.67588190::chr7:g.66094856)	PRECISE		MANUAL_OK	3to3	Antisense fusion	0	NA	0	21	9	21
P-0013664-T02-IM5	SOMATIC	ETV6	NTRK3	15	12	88558191	12032077	Intron of NTRK3(-): 18Kb after exon 13	Intron of ETV6(+): 5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) Fusion (ETV6 exons 1-5 fused with NTRK3 exons 15-20) :  t(12;15)(p13.2;q26.1)(chr12:g.12032077::chr15:g.88558191)	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (ETV6-NTRK3)	0	NA	0	23	12	23
P-0013664-T04-IM6	SOMATIC	ETV6	NTRK3	15	12	88558191	12032077	Intron of NTRK3(-):18Kb after exon 14	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion (ETV6 exons 1-5 fused in-frame to NTRK3 exons 15-20): t(12;15)(p13.2;q25.3)(chr12:g.12032077::chr15:g.88558191)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	66	10	64
P-0013782-T01-IM5	SOMATIC	SMARCD1	SMARCD1	12	12	50484370	50488216	Exon 9 of SMARCD1(+)	Intron of SMARCD1(+): 4bp before exon 10	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement:c.1130_c.1134-4del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	3846	NA	0	7	15	6
P-0013808-T02-IM6	SOMATIC	PBRM1	SMG1	16	3	18853678	52695981	Exon 40 of SMG1(-)	Intron of PBRM1(-):167bp after exon 5	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) - SMG1 (NM_015092) rearrangement: t(3;16)(p21.1;p12.3)(chr3:g.52695981::chr16:g.18853678)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PBRM1:SMG1}	0	NA	0	41	10	41
P-0013808-T02-IM6	SOMATIC	EP300	EP300	22	22	41448977	41574635	IGR: 40Kb before MIR1281(+)	Exon 31 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: chr22:g.41448977_c.6920dup	PRECISE		MANUAL_OK	5to3	-	125658	NA	0	9	10	9
P-0013920-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187525176	187546941	Intron of FAT1(-):45bp before exon 19	Intron of FAT1(-):2Kb after exon 9	GRCh37	DELETION	FAT1 (NM_005245) Rearrangement : c.4810+2367_c.10549-45del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : out of frame	21765	NA	0	46	10	49
P-0013926-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55207461	55223276	Intron of EGFR(+): 3Kb before exon 2	Intron of EGFR(+): 247bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-2518_c.890-247del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	15815	NA	0	102	132	318
P-0013926-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55268401	55272702	Intron of EGFR(+): 295bp after exon 24	Intron of EGFR(+): 247bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+295_c.3272-247del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	4301	NA	0	10	11	5
P-0014006-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55185104	55222133	Intron of EGFR(+): 25Kb before exon 2	Intron of EGFR(+): 288bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intrangenic deletion: c.89-24875_c.889+288del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	37029	NA	0	102	143	270
P-0014059-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55194644	55222450	Intron of EGFR(+): 15Kb before exon 2	Intron of EGFR(+): 605bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) Rearrangement : c.89-15335_c.889+605inv	PRECISE		MANUAL_OK	5to5	-	27806	NA	1	102	822	1020
P-0014137-T01-IM5	SOMATIC	NF2	NF2	22	22	30035207	45151093	Intron of NF2(+): 6bp after exon 3	Intron of PRR5-ARHGAP8(+): 29Kb after exon 4	GRCh37	INVERSION	NF2 (NM_000268) Rearrangement : c.363+6:NF2_chr22:45151093inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	15115886	NA	0	38	67	37
P-0014639-T02-IM6	SOMATIC	RRAS2	RRAS2	11	11	14303432	14317522	Intron of RRAS2(-):166bp before exon 5	Intron of RRAS2(-):121bp before exon 2	GRCh37	DELETION	RRAS2 (NM_012250) rearrangement: c.109-121_c.409-166del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	14090	NA	0	7	10	7
P-0014639-T02-IM6	SOMATIC	IRF4	PRIM2	6	6	407481	57256824	Exon 9 of IRF4(+)	Intron of PRIM2(+):10Kb after exon 7	GRCh37	DELETION	IRF4 (NM_002460) - PRIM2 (NM_000947) rearrangement: c.1239:IRF4_c.693+9858:PRIM2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {IRF4:PRIM2}	56849343	NA	0	10	10	12
P-0015415-T01-IM6	SOMATIC	MLL	MLL	11	11	118337156	118343221	Intron of MLL(+): 2Kb before exon 2	Exon 3 of MLL(+)	GRCh37	DELETION	MLL (NM_001197104) Rearrangement: c.433-2334_c.1347del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	6065	NA	0	37	36	36
P-0015434-T01-IM6	SOMATIC	EML4	ALK	2	2	29448197	42522719	Intron of ALK(-): 130bp after exon 19	Intron of EML4(+): 63bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon 13 fused to ALK exon20): c.1489+63:EML4_c.3172+130:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13074522	NA	0	55	69	51
P-0015724-T01-IM6	SOMATIC	LOH12CR1	ETV6	12	12	12034428	12515320	Intron of ETV6(+): 3Kb before exon 6	Intron of LOH12CR1(+): 1Kb after exon 2	GRCh37	DUPLICATION	LOH12CR1 (NM_058169) - ETV6 (NM_001987) rearrangement: c.202+1037:LOH12CR1_c.1010-2951:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (LOH12CR1-ETV6)	480892	NA	0	3	7	3
P-0015920-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27091659	27093027	Intron of ARID1A(+):1Kb before exon 9	Exon 10 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2733-1053_c.2958del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1368	NA	0	19	10	22
P-0015920-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46738441	46741316	Exon 13 of RAD54L(+)	Intron of RAD54L(+):927bp after exon 17	GRCh37	DELETION	RAD54L (NM_001142548) rearrangement: c.1342_c.1869+927del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2875	NA	0	13	10	15
P-0015920-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16012162	16017006	Exon 19 of NCOR1(-)	Intron of NCOR1(-):4Kb after exon 18	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.2120_c.2055+4196del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4844	NA	0	17	10	22
P-0015984-T01-IM6	SOMATIC	TACC3	FGFR3	4	4	1737391	1809007	Intron of TACC3(+):66bp before exon 8	3-UTR of FGFR3(+):13Kb after coding stop	GRCh37	DUPLICATION	TACC3 (NM_006342) - FGFR3 (NM_000142) Rearrangement : c.1645-67:TACC3_c.*18:FGFR3dup	IMPPRECISE		MANUAL_OK	5to3	-	71616	NA	0	5	0	5
P-0016188-T01-IM6	SOMATIC	ZNF135	ERRFI1	19	1	58577950	8075425	Intron of ZNF135(+):517bp before exon 4	Exon 3 of ERRFI1(-)	GRCh37	TRANSLOCATION	ZNF135 (NM_007134) - ERRFI1 (NM_018948) fusion ( ZNF135 exon 4 with ERRFI1 exons 1-3) : t(1;19)(q36.31;q13.43)(chr1:g.8075425::chr19:g.58577950)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ERRFI1:ZNF135}	0	NA	0	29	10	31
P-0016188-T03-IM6	SOMATIC	ERRFI1	ZNF135	19	1	58577950	8075425	Intron of ZNF135(+):517bp before exon 4	Exon 3 of ERRFI1(-)	GRCh37	TRANSLOCATION	ERRFI1 (NM_018948) - ZNF135 (NM_007134) rearrangement: t(1;19)(p36.23;q13.43)(chr1:g.8075425::chr19:g.58577950)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ERRFI1:ZNF135}	0	NA	0	26	10	31
P-0016347-T01-IM6	SOMATIC	TRIM63	NTRK1	1	1	26379998	156844048	Intron of TRIM63(-):385bp after exon 8	Intron of NTRK1(+):126bp before exon 9	GRCh37	INVERSION	TRIM63 (NM_032588) - NTRK1 (NM_002529) Rearrangement : c.1051+386:TRIM63_c.1178-127:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TRIM63:NTRK1}	130464050	NA	0	24	10	39
P-0016351-T01-IM6	SOMATIC	TP63	TP63	3	3	189582010	189710450	Intron of TP63(+):10bp before exon 5	Intron of LEPREL1(-):1Kb after exon 3	GRCh37	DUPLICATION	TP63 (NM_003722) Rearrangement : c.580-11:TP63_c.823+1433:LEPREL1dup	PRECISE		MANUAL_OK	5to3	-	128440	NA	0	7	10	7
P-0016546-T01-IM6	SOMATIC	SPEN	TMEM51	1	1	15523855	16254908	5-UTR of TMEM51(+):18Kb before coding start	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - TMEM51 (NM_018022) rearrangement: c.2173:SPEN_c.-193-17536:TMEM51dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:TMEM51}	731053	NA	0	10	10	10
P-0016624-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1732615	1808733	Exon 5 of TACC3(+)	Intron of FGFR3(+):72bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exon 17 fused to TACC3 exon 5): c.2274+72:FGFR3_c.1387:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	76118	NA	0	57	10	61
P-0017217-T01-IM6	SOMATIC	AKT1	AKT1	14	14	105237184	105238702	Exon 13 of AKT1(-)	Exon 12 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: c.1260_c.1261del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1518	NA	0	8	10	8
P-0017217-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15983506	15985685	Intron of NCOR1(-):128bp before exon 26	Intron of NCOR1(-):2Kb before exon 24	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.3178-1644_c.3401-128del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2179	NA	0	6	10	6
P-0017471-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55114337	55221846	Intron of EGFR(+):27Kb after exon 1	Intron of EGFR(+):1bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.88+27279_c.889+1del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	107509	NA	0	57	10	59
P-0017471-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55191260	55221973	Intron of EGFR(+):19Kb before exon 2	Intron of EGFR(+):128bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-18719_c.889+128del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	30713	NA	0	53	10	65
P-0018187-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140494186	140559785	Exon 8 of BRAF(-)	Intron of BRAF(-):10Kb before exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.139-9773_c.1062del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	65599	NA	0	4	10	7
P-0018441-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55206190	55222200	Intron of EGFR(+):4Kb before exon 2	Intron of EGFR(+):355bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) VIII intragenic deletion : c.89-3789_889+355del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	16010	NA	0	121	10	952
P-0019341-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	25550206	43749055	IGR: 27Kb before SNORD109A(+)	Exon 12 of TP53BP1(-)	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: g.25550206_c.1751:TP53BP1inv	PRECISE		MANUAL_OK	3to3	-	18198849	NA	0	52	10	49
P-0019341-T01-IM6	SOMATIC	CDKN2Ap14ARF	MTAP	9	9	21842696	21974432	Intron of MTAP(+):5Kb after exon 5	Intron of CDKN2Ap14ARF(-):3Kb before exon 2	GRCh37	INVERSION	CDKN2Ap14ARF (NM_058195) - MTAP (NM_002451) rearrangement: c.194-3225:CDKN2Ap14ARF_c.450+4687:MTAPinv	PRECISE		MANUAL_OK	5to5	-	131736	NA	NA	17	10	NA
P-0019341-T01-IM6	SOMATIC	CDKN2Ap16INK4A	MTAP	9	9	21842696	21974432	Intron of MTAP(+):5Kb after exon 5	Intron of CDKN2Ap16INK4A(-):3Kb before exon 2	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) - MTAP (NM_002451) rearrangement: c.150+245:CDKN2Ap16INK4A_c.450+4687:MTAPinv	PRECISE		MANUAL_OK	5to5	-	131736	NA	NA	17	10	NA
P-0019915-T01-IM6	SOMATIC	CDKN1A	CDKN1A	6	3	36651921	191928578	Exon 3 of CDKN1A(+)	Intron of FGF12(-):40Kb before exon 5	GRCh37	TRANSLOCATION	CDKN1A (NM_078467) rearrangement: t(3;6)(q28;p21.2)(chr3:g.191928578::chr6:g.36651921)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	10	10	10
P-0020065-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433281	49434359	Exon 32 of KMT2D(-)	Exon 31 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement : c.8166_c.7194inv	PRECISE		MANUAL_OK	3to3	-	1078	NA	0	2	8	2
P-0020065-T01-IM6	SOMATIC	SRC	SRC	20	20	36025986	36481250	Intron of SRC(+):115bp before exon 9	Intron of CTNNBL1(+):7Kb before exon 14	GRCh37	INVERSION	SRC (NM_198291) rearrangement : c.704-116:SRC_g.36481250inv	PRECISE		MANUAL_OK	5to5	-	455264	NA	0	12	10	12
P-0020156-T01-IM6	SOMATIC	EWSR1	EMID1	22	22	29624948	29689395	Intron of EMID1(+):2Kb before exon 6	Intron of EWSR1(+):800bp after exon 12	GRCh37	DUPLICATION	EWSR1 (NM_013986) - EMID1 (NM_133455) rearrangement: c.945+800:EWSR1_c.466-2061:EMID1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EWSR1:EMID1}	64447	NA	0	29	10	30
P-0020694-T01-IM6	SOMATIC	B2M	B2M	15	15	44989687	45007696	IGR: 14Kb before B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: chr15:g.44989687_c.143:B2Mdel	PRECISE		MANUAL_OK	3to5	-	18009	NA	0	35	10	36
P-0020720-T01-IM6	SOMATIC	TP53	TP53	17	17	7578713	7580506	Intron of TP53(-):159bp before exon 5	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.376-159_c.-28-566del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1793	NA	0	84	0	87
P-0021177-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114918419	115131344	Intron of TCF7L2(+):591bp after exon 12	IGR: 179Kb before HABP2(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.1318+591:TCF7L2_chr10:g.115131344del	PRECISE		MANUAL_OK	3to5	-	212925	NA	0	16	10	16
P-0021177-T01-IM6	SOMATIC	DHH	KMT2D	12	12	49435103	49487152	Exon 31 of KMT2D(-)	Intron of DHH(-):840bp after exon 1	GRCh37	DELETION	DHH (NM_021044) - KMT2D (NM_00348) rearrangement: c.303+841:DHH_c.6450:KMT2Ddel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DHH:KMT2D}	52049	NA	0	10	10	10
P-0021390-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27086311	27087375	Intron of ARID1A(+):1Kb before exon 5	Exon 5 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1921-1093_c.1949del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1064	NA	0	138	0	220
P-0021390-T02-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21974813	21975795	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):5Kb before exon 2	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.14_c.-969del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	982	NA	0	69	0	83
P-0021605-T01-IM6	SOMATIC	SHOC2	SHOC2	10	10	91947785	112769535	IGR: 214Kb before LOC101926942(-)	Exon 8 of SHOC2(+)	GRCh37	DELETION	SHOC2 (NM_007373) Rearrangement : chr10:g.91947785_c.1487:SHOC2del	PRECISE		MANUAL_OK	3to5	-	20821750	NA	0	8	10	17
P-0021769-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61721218	61746833	Exon 12 of XPO1(-)	Intron of XPO1(-):3Kb after exon 4	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.301+2913_c.1056del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25615	NA	0	24	0	25
P-0022795-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29492416	29686200	Intron of KREMEN1(+):2Kb after exon 2	Intron of EWSR1(+):1Kb before exon 10	GRCh37	INVERSION	EWSR1 (NM_013986) Rearrangement : c.260+2008:KREMEN1_c.993-1354:EWSR1inv	PRECISE		MANUAL_OK	5to5	-	193784	NA	0	10	10	10
P-0022950-T01-IM6	SOMATIC	RAD52	RAD52	12	12	1023271	4749432	Exon 11 of RAD52(-)	5-UTR of AKAP3(-):25Kb before coding start	GRCh37	DELETION	RAD52 (NM_134424) rearrangement: c.984:RAD52_chr12:g.4749432Cdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AKAP3:RAD52}	3726161	NA	0	27	10	26
P-0023249-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42845757	42872436	Intron of TMPRSS2(-):334bp before exon 9	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2320_c.839-334inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	26679	NA	0	75	10	104
P-0023713-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115260250	115262320	3-UTR of CSDE1(-):539bp after coding stop	Exon 19 of CSDE1(-)	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.2234_c.*540inv	PRECISE		MANUAL_OK	3to3	-	2070	NA	0	14	10	15
P-0023713-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46262772	46287166	Intron of ARID2(+):8Kb after exon 16	Intron of ARID2(+):36bp before exon 19	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.4922+8040_c.5148-37del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	24394	NA	0	12	0	14
P-0024450-T03-IM6	SOMATIC	NTHL1	NTHL1	19	16	10213963	2090167	Promoter of PPAN-P2RY11(+):3Kb from tx start	Exon 5 of NTHL1(-)	GRCh37	TRANSLOCATION	NTHL1 (NM_002528) rearrangement: t(16;19)(p13.3;p13.2)(chr16:g.2090167::chr19:g.10213963)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	117	10	122
P-0024544-T01-IM6	SOMATIC	MGA	MAPKBP1	15	15	42021484	42113676	Exon 11 of MGA(+)	Intron of MAPKBP1(+):105bp before exon 24	GRCh37	DELETION	MGA (NM_001164273) - MAPKBP1 (NM_001128608) rearrangement: c.3780:MGA_c.2737-106:MAPKBP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MGA:MAPKBP1}	92192	NA	0	2	5	2
P-0024694-T02-IM6	SOMATIC	FGFR3	FGFR3	4	1	1808889	230841303	Exon 18 of FGFR3(+)	Intron of AGT(-):375bp after exon 3	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(1;4)(q42.2;p16.3)(chr1:g.230841303::chr4:g.1808889)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	223	10	277
P-0025018-T01-IM6	SOMATIC	LANCL2	EGFR	7	7	55268537	55498664	Intron of EGFR(+):343bp before exon 25	Intron of LANCL2(+):254bp before exon 9	GRCh37	DUPLICATION	LANCL2 (NM_018697) - EGFR (NM_005228) rearrangement: c.1259-255:LANCL2_c.2947-344:EGFRdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LANCL2:EGFR}	230127	NA	0	38	10	38
P-0025871-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	36973437	38196063	IGR: 291Kb before LOC100507420(-)	Exon 3 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.738:WHSC1L1 _chr8:g.36973437inv	PRECISE		MANUAL_OK	3to3	-	1222626	NA	0	32	10	37
P-0025973-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47139285	47142104	Intron of SETD2(-):159bp after exon 9	Intron of SETD2(-):843bp after exon 8	GRCh37	DUPLICATION	SETD2 (NM_014159) Rearrangement : c.5015+844_c.5142+160dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2819	NA	0	9	10	9
P-0026488-T01-IM6	SOMATIC	PRKAR1A	MYO1D	17	17	31078036	66522089	Intron of MYO1D(-):2Kb before exon 12	Intron of PRKAR1A(+):36bp after exon 7	GRCh37	INVERSION	PRKAR1A (NM_212471) - MYO1D (NM_015194) rearrangement: c.708+36:PRKAR1A_c.1468-2012:MYO1Dinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PRKAR1A:MYO1D}	35444053	NA	0	8	10	8
P-0026506-T01-IM6	SOMATIC	WT1	WT1	11	8	32414224	74791141	Exon 8 of WT1(-)	Exon 1 of UBE2W(-)	GRCh37	TRANSLOCATION	WT1 (NM_024426) Rearrangement :  t(8;13)(q21.11,p13)(chr8:g.74791141::chr11:g.32414224)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0026683-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15354221	15431410	Exon 14 of BRD4(-)	IGR: 33Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2659:BRD4_chr19:g.15431410del	PRECISE		MANUAL_OK	3to5	-	77189	NA	0	28	10	31
P-0027084-T01-IM6	SOMATIC	SLX4	SLX4	16	16	3633411	34647886	Exon 14 of SLX4(-)	IGR: 50Kb before LINC01566(+)	GRCh37	INVERSION	SLX4 (NM_032444) rearrangement: c.4840:SLX4_chr16:g.34647886inv	PRECISE		MANUAL_OK	3to3	-	31014475	NA	0	47	10	45
P-0027651-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40253265	40485701	Promoter of DHX58(-):156bp from tx start	Exon 10 of STAT3(-)	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.1039:STAT3_chr17:g.40253265	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DHX58:STAT3}	232436	NA	0	6	10	7
P-0028804-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139410523	139536999	Exon 10 of NOTCH1(-)	IGR: 16Kb before EGFL7(+)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.1579:NOTCH1_chr9:g.139536999inv	PRECISE		MANUAL_OK	3to3	-	126476	NA	0	131	10	127
P-0029539-T01-IM6	SOMATIC	CCNE1	ACTN4	19	19	30311541	39218658	Intron of CCNE1(+):67bp before exon 7	Exon 19 of ACTN4(+)	GRCh37	DELETION	CCNE1 (NM_001238) - ACTN4 (NM_004924) rearrangement: c.463-68:CCNE1_c.2410:ACTN4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CCNE1:ACTN4}	8907117	NA	0	4	9	4
P-0029539-T01-IM6	SOMATIC	RRAS	RRAS	19	5	50139900	12569365	Exon 4 of RRAS(-)	IGR: 6Kb before LINC01194(+)	GRCh37	TRANSLOCATION	RRAS (NM_006270) rearrangement: t(5;19)(p15.2;q13.33)(chr5:g.12569365::chr19:g.50139900)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	28	10	28
P-0030005-T01-IM6	SOMATIC	LYN	LYN	8	8	56922508	56923561	Exon 13 of LYN(+)	3-UTR of LYN(+):69Kb after coding stop	GRCh37	INVERSION	LYN (NM_002350) rearrangement: c.1378_c.*892inv	PRECISE		MANUAL_OK	5to5	-	1053	NA	0	40	10	49
P-0030023-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53242032	53243958	Intron of KDM5C(-):944bp before exon 9	Exon 8 of KDM5C(-)	GRCh37	DELETION	KDM5C (NM_004187) Rearrangement: c.1123-944_c.1035del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1926	NA	0	14	10	17
P-0030156-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69012575	69033215	Intron of PREX2(+):497bp after exon 23	Exon 30 of PREX2(+)	GRCh37	DELETION	PREX2 (NM_024870) Rearrangement : c.2715+497_c.3655del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	20640	NA	0	35	10	36
P-0030222-T01-IM6	SOMATIC	VWC2	EGFR	7	7	49913841	55259621	Intron of VWC2(+):38Kb before exon 4	Intron of EGFR(+):54bp after exon 21	GRCh37	DELETION	VWC2 (NM_198570) - EGFR (NM_005228) rearrangement: c.827-37789:VWC2_c.2625+54:EGFRdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {VWC2:EGFR}	5345780	NA	0	4	0	4
P-0030222-T01-IM6	SOMATIC	ZPBP	EGFR	7	7	50091866	55209996	Intron of ZPBP(-):6Kb after exon 4	Exon 2 of EGFR(+)	GRCh37	INVERSION	ZPBP (NM_007009) - EGFR (NM_005228)  rearrangement: c.487+5719:ZPBP_c.106:EGFRinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ZPBP:EGFR}	5118130	NA	0	11	0	14
P-0030309-T01-IM6	SOMATIC	EGFR	EGFR	7	7	52700313	55269664	IGR: 403Kb before POM121L12(+)	Intron of EGFR(+):189bp after exon 26	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: chr7:g.52700313_c.3162+189:EGFR_inv	PRECISE		MANUAL_OK	3to3	-	2569351	NA	0	5	10	5
P-0030384-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39934109	42871372	Intron of ERG(-):13Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1256:TMPRSS2_c.39+13477:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2937263	NA	0	29	0	30
P-0030539-T01-IM6	SOMATIC	FLCN	FLCN	17	17	14253318	17131328	IGR: 46Kb before MGC12916(+)	Exon 4 of FLCN(-)	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.124:FLCN_chr17:g.14253318del	PRECISE		MANUAL_OK	3to5	-	2878010	NA	0	52	10	53
P-0030547-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55195980	55221986	Intron of EGFR(+):14Kb before exon 2	Intron of EGFR(+):141bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-13999_c.889+141del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	26006	NA	0	121	10	128
P-0030547-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55230319	55236291	Intron of EGFR(+):995bp after exon 13	Intron of EGFR(+):3Kb before exon 16	GRCh37	DELETION	EGFR (NM_005228) rearrangement:   c.1631+995_c.1881-2577del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5972	NA	0	48	10	48
P-0030547-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268230	55272674	Intron of EGFR(+):124bp after exon 24	Intron of EGFR(+):274bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement:   c.2946+124_c.3272-275del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4444	NA	0	9	0	9
P-0030645-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39930064	42870774	Intron of ERG(-):18Kb after exon 3	Intron of TMPRSS2(-):658bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion (TMPRSS2 exon 1 fused to ERG exons 4-11): c.56-658:TMPRSS2_c.39+17522:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2940710	NA	0	27	10	29
P-0030694-T01-IM6	SOMATIC	SUZ12	SUZ12	17	16	30320331	58252801	Exon 11 of SUZ12(+)	IGR: 31Kb before CCDC113(+)	GRCh37	TRANSLOCATION	SUZ12 (NM_015355) rearrangement: t(16;17)(q21;q11.2)(chr16:g.58252801::chr17:g.30320331)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	28
P-0030738-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72984609	72993845	Exon 3 of ZFHX3(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.200_c.2975del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9236	NA	0	33	10	34
P-0030844-T01-IM6	SOMATIC	PIK3CD	MTOR	1	1	9782666	11228053	Intron of PIK3CD(+):2bp after exon 19	Intron of MTOR(-):479bp before exon 29	GRCh37	DELETION	PIK3CD (NM_005026) - MTOR (NM_004958) Rearrangement: c.2426+2:PIK3CD_c.4254-479:MTORdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1445387	NA	0	14	10	16
P-0030844-T01-IM6	SOMATIC	FGFR2	MYH15	10	3	123240665	108134575	Intron of FGFR2(-):1Kb before exon 18	Intron of MYH15(-):1Kb after exon 30	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - MYH15 (NM_014981) rearrangement: t(3;10)(q13.13;q26.13)(chr3:g.108134575::chr10:g.123240665)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:MYH15}	0	NA	0	105	10	127
P-0030866-T01-IM6	SOMATIC	EED	EED	13	11	21679892	85966402	IGR: 35Kb before SAP18(+)	Intron of EED(+):73bp after exon 4	GRCh37	TRANSLOCATION	EED (NM_003797) rearrangement: t(11;13)(q14.2;q12.11)(chr11:g.85966402::chr13:g.21679892)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	23
P-0030866-T01-IM6	SOMATIC	RHEB	RHEB	7	7	43707414	151174177	3-UTR of COA1(-):62Kb after coding stop	Intron of RHEB(-):241bp after exon 4	GRCh37	INVERSION	RHEB (NM_005614) rearrangement: c.275+242:RHEB_chr7:g.43707414inv	PRECISE		MANUAL_OK	5to5	-	107466763	NA	0	13	10	14
P-0030866-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	116443821	151917883	IGR: 59Kb before CAPZA2(+)	Intron of KMT2C(-):63bp before exon 23	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.3500-63:KMT2C_chr7:g.116443821inv	IMPPRECISE		MANUAL_OK	5to5	-	35474062	NA	0	6	0	7
P-0030910-T01-IM6	SOMATIC	SEL1L	EGFR	14	7	81986576	55222485	Intron of SEL1L(-):6Kb after exon 3	Intron of EGFR(+):640bp after exon 7	GRCh37	TRANSLOCATION	SEL1L (NM_005065) - EGFR (NM_005228) rearrangement: t(7;14)(p11.2;q31.1)(chr7:g.55222485::chr14:g.81986576)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SEL1L:EGFR}	0	NA	0	131	10	148
P-0030943-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41246822	41279040	Exon 10 of BRCA1(-)	Promoter of BRCA1(-):83Kb from tx start	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.-1772_c.726del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	32218	NA	0	50	10	51
P-0030943-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117659596	121016948	Intron of ROS1(-):1Kb before exon 31	IGR: 384Kb before TBC1D32(-)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5080-1093:ROS1_chr6:g.121016948del	PRECISE		MANUAL_OK	3to5	-	3357352	NA	0	48	10	52
P-0031008-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39850475	42873559	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3443:TMPRSS2_c.18+19812:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3023084	NA	0	15	10	16
P-0031031-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	57400991	62326046	3-UTR of GNAS-AS1(-):25Kb after coding stop	Intron of RTEL1(+):47bp before exon 32	GRCh37	DELETION	RTEL1 (NM_032957) Rearrangement: c.3182-48:RTEL1_chr20:g.57400991del	PRECISE		MANUAL_OK	3to5	-	4925055	NA	0	15	10	15
P-0031053-T01-IM6	SOMATIC	MAP3K13	LIPH	3	3	185181480	185244205	Intron of MAP3K13(+):33bp after exon 8	Intron of LIPH(-):1Kb after exon 4	GRCh37	INVERSION	MAP3K13 (NM_004721) - LIPH (NM_139248) rearrangement: c.1388+33:MAP3K13_c.628+1067:LIPHinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MAP3K13:LIPH}	62725	NA	0	23	10	30
P-0031053-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55113387	55222162	Intron of EGFR(+):26Kb after exon 1	Intron of EGFR(+):317bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+26329_c.889+317del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	108775	NA	0	26	10	1157
P-0031077-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55159727	55223227	Intron of EGFR(+):50Kb before exon 2	Intron of EGFR(+):295bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion : c.89-50252_c.890-296del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	63500	NA	0	103	0	563
P-0031077-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268762	55270978	Intron of EGFR(+):118bp before exon 25	Intron of EGFR(+):660bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2947-119_c.3271+660del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2216	NA	0	277	10	751
P-0031152-T01-IM6	SOMATIC	NUF2	NUF2	1	1	163323568	163325371	Intron of NUF2(+):2Kb before exon 14	3-UTR of NUF2(+):30Kb after coding stop	GRCh37	INVERSION	NUF2 (NM_031423) Rearrangement: c.1261-1557_c.*112inv	PRECISE		MANUAL_OK	3to3	-	1803	NA	0	24	10	24
P-0031232-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21962196	22008494	IGR: 5Kb before CDKN2A-AS1(+)	Intron of CDKN2B(-):302bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+303:CDKN1B_chr9:g.21962196del	PRECISE		MANUAL_OK	3to5	-	46298	NA	0	3	5	4
P-0031234-T01-IM6	SOMATIC	PAX8	USP37	2	2	113984056	219367191	Intron of PAX8(-):675bp after exon 10	Intron of USP37(-):4Kb before exon 12	GRCh37	DUPLICATION	PAX8 (NM_003466) - USP37 (NM_020935) rearrangement: c.1189+676:PAX8_c.1026-4311:USP37dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PAX8:USP37}	105383135	NA	0	3	10	3
P-0031824-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89592277	89837023	Intron of SPG7(+):459bp before exon 5	Exon 24 of FANCA(-)	GRCh37	DUPLICATION	FANCA (NM_000135) rearrangement: c.2171:FANCA_chr16:g.89592277dup	PRECISE		MANUAL_OK	5to3	-	244746	NA	0	58	10	59
P-0031824-T01-IM6	SOMATIC	EML4	ALK	2	2	29450557	42475798	Intron of ALK(-):19bp before exon 17	Intron of EML4(+):3Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+2971:EML4_c.2816-19:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13025241	NA	1	167	10	166
P-0031946-T01-IM6	SOMATIC	TP53	TP53	17	17	7568452	7576698	IGR: 3Kb before TP53(-)	Intron of TP53(-):154bp after exon 9	GRCh37	INVERSION	TP53 (NM_000546) Rearrangement: c.993+155_c.*4475inv	PRECISE		MANUAL_OK	3to3	-	8246	NA	0	19	10	19
P-0032601-T02-IM6	SOMATIC	MYC	MYC	8	4	128753320	77611423	3-UTR of MYC(+):4Kb after coding stop	Intron of SHROOM3(+):20Kb before exon 3	GRCh37	TRANSLOCATION	MYC (NM_002467) rearrangement: t(4:8)(q21.1;q24.21)(chr4:g.77611423::chr8:g.128753320)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0032692-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55179500	55222073	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):228bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-30479_c.889+228del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	42573	NA	0	116	10	125
P-0032692-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269629	55272030	Intron of EGFR(+):154bp after exon 26	Intron of EGFR(+):918bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3162+154_c.3272-919del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2401	NA	0	4	0	4
P-0032692-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55093523	55222774	Intron of EGFR(+):6Kb after exon 1	Intron of EGFR(+):748bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+6465_c.890-749del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	129251	NA	0	106	0	372
P-0032692-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55269624	55272030	Intron of EGFR(+):149bp after exon 26	Intron of EGFR(+):918bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3162+149_c.3272-919del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2406	NA	0	9	10	9
P-0033077-T01-IM6	SOMATIC	MSH2	MSH2	2	2	34164010	47709917	5-UTR of LINC01317(+):359Kb before coding start	Exon 16 of MSH2(+)	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: chr2:g.34164010_c.2635-1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LINC01317:MSH2}	13545907	NA	0	17	10	18
P-0033077-T01-IM6	SOMATIC	ROS1	SLC35F1	6	6	117651200	118365508	Intron of ROS1(-):591bp before exon 32	Intron of SLC35F1(+):110Kb before exon 2	GRCh37	DELETION	ROS1 (NM_002944) - SLC35F1 (NM_00102985) rearrangement: c.5249-591:ROS1_c.174-110100:SLC35F1del	PRECISE		MANUAL_OK	3to5	-	714308	NA	0	17	10	17
P-0033633-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31511257	31515579	Exon 8 of DROSHA(-)	Exon 6 of DROSHA(-)	GRCh37	DUPLICATION	DROSHA (NM_013235) rearrangement: c.1040_c.1317dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4322	NA	0	44	10	45
P-0034513-T01-IM6	SOMATIC	H3F3B	H3F3B	17	17	72188371	73774750	IGR: 11Kb before RPL38(+)	Exon 4 of H3F3B(-)	GRCh37	DELETION	H3F3B (NM_005324) rearrangement: chr17:g.72188371_c.337del	PRECISE		MANUAL_OK	3to5	-	1586379	NA	0	6	10	7
P-0034594-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268544	55863888	Intron of EGFR(+):336bp before exon 25	Intron of SEPT14(-):103bp before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion :  c.2947-110:EGFR_c.1120-1204:SEPT14	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	595344	NA	0	217	10	587
P-0034632-T03-IM6	SOMATIC	CDH1	CDH1	16	15	68847420	79195333	Intron of CDH1(+):22bp after exon 9	IGR: 19Kb before CTSH(-)	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(15;16)(q25.1;q22.1)(chr15:g.79195333::chr16:g.68847420)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0034818-T02-IM6	SOMATIC	GATA3	GATA3	10	10	8100751	10240747	Exon 3 of GATA3(+)	IGR: 140Kb before LOC101928298(+)	GRCh37	DUPLICATION	GATA3 (NM_002051) rearrangement: c.725:GATA3_chr10:g.10240747dup	PRECISE		MANUAL_OK	5to3	-	2139996	NA	0	8	10	8
P-0034818-T02-IM6	SOMATIC	GNA11	GNA11	19	6	3119247	122459052	Exon 6 of GNA11(+)	IGR: 262Kb before HSF2(+)	GRCh37	TRANSLOCATION	GNA11 (NM_002067) rearrangement: t(6;19)(q22.31;p13.3)(chr6:g.122459052::chr19:g.3119247)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	53	10	53
P-0034868-T01-IM6	SOMATIC	TLK2	BRIP1	17	17	59761015	60672260	Exon 20 of BRIP1(-)	Intron of TLK2(+):2Kb before exon 18	GRCh37	INVERSION	TLK2 (NM_006852) - BRIP1 (NM_032043) rearrangement: c.1461-1686:TLK2_c.3392:BRIP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TLK2:BRIP1}	911245	NA	0	9	10	8
P-0035316-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8073980	12117784	Exon 4 of ERRFI1(-)	IGR: 6Kb before TNFRSF8(+)	GRCh37	DELETION	ERRFI1 (NM_018948) rearrangement: c.679_chr1:g.12117784del	PRECISE		MANUAL_OK	3to5	-	4043804	NA	0	56	10	65
P-0036400-T06-IM6	SOMATIC	SPECC1L	RET	22	10	24739056	43610353	Intron of SPECC1L(+):4Kb before exon 11	Intron of RET(+):169bp after exon 11	GRCh37	TRANSLOCATION	SPECC1L (NM_001145468) - RET (NM_020975) fusion: t(10;22)(q11.21;q11.23)(chr10:g.43610353::chr22:g.24739056)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SPECC1L:RET}	0	NA	0	189	10	259
P-0036680-T01-IM6	SOMATIC	KLHL12	BRAF	7	1	140493984	202880970	Intron of BRAF(-):123bp after exon 8	Intron of KLHL12(-):639bp before exon 5	GRCh37	TRANSLOCATION	KLHL12 (NM_021633) - BRAF (NM_004333) fusion (KLHL12 exons 1-4 fused to BRAF exons 9-18): t(1;7)(q32.1;q34)(chr1:g.202880970::chr7:g.140493984)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KLHL12:BRAF}	0	NA	0	39	10	42
P-0037539-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55182883	55223168	Intron of EGFR(+):27Kb before exon 2	Intron of EGFR(+):354bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-27096_c.890-355del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	40285	NA	0	60	10	432
P-0038250-T01-IM6	SOMATIC	MAP1A	TP53BP1	15	15	43713304	43815849	Exon 20 of TP53BP1(-)	Exon 4 of MAP1A(+)	GRCh37	INVERSION	MAP1A (NM_002373) - TP53BP1 (NM_001141980) Rearrangement : c.2178:MAP1A_c.4169:TP53BP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MAP1A:TP53BP1}	102545	NA	0	62	10	119
P-0038250-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89341402	89347185	Intron of ANKRD11(-):37bp before exon 11	Exon 9 of ANKRD11(-)	GRCh37	DUPLICATION	ANKRD11 (NM_013275) Rearrangement : c.5765_c.7570-37dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5783	NA	0	6	10	7
P-0038265-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	29901266	37879836	Promoter of MIR4725(+):1Kb from tx start	Exon 18 of ERBB2(+)	GRCh37	INVERSION	ERBB2 (NM_004448) Rearrangement: c.2131:ERBB2_chr17:g.29901266inv	PRECISE		MANUAL_OK	5to5	-	7978570	NA	0	78	10	95
P-0038316-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48599163	48651672	IGR: 21Kb before GLOD5(+)	Exon 5 of GATA1(+)	GRCh37	DUPLICATION	GATA1 (NM_002049) rearrangement: c.838:GATA1_chrX:g.48599163dup	PRECISE		MANUAL_OK	5to3	-	52509	NA	0	128	10	156
P-0040452-T01-IM6	SOMATIC	AGO2	AGO2	8	8	130712714	141595115	IGR: 48Kb before GSDMC(-)	Intron of AGO2(-):102bp after exon 2	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.215+103:AGO2_chr8:g.130712714del	IMPPRECISE		MANUAL_OK	3to5	-	10882401	NA	0	7	0	7
P-0041672-T01-IM6	SOMATIC	AK9	IGF1R	15	6	99486197	109947133	Exon 19 of IGF1R(+)	Intron of AK9(-):7Kb before exon 13	GRCh37	TRANSLOCATION	AK9 (NM_001145128) - IGF1R (NM_000875) rearrangement: t(6;15)(q21;q26.3)(chr6:g.109947133::chr15:g.99486197)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {AK9:IGF1R}	0	NA	0	5	10	5
P-0041828-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11877073	12016614	Intron of ETV6(+):28Kb before exon 2	Intron of ETV6(+):6Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.34-28311_c.464-5744del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	139541	NA	0	9	10	10
P-0041855-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187524578	187591327	Exon 19 of FAT1(-)	Intron of FAT1(-):7Kb before exon 3	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3266-6560_c.11102del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	66749	NA	0	35	10	37
P-0041874-T01-IM6	SOMATIC	BCAN	NTRK1	1	1	156616369	156843258	Intron of BCAN(+):223bp before exon 3	Intron of NTRK1(+):166bp before exon 8	GRCh37	DELETION	BCAN (NM_021948) - NTRK1 (NM_002529) fusion: c.92-224:BCAN_c.851-167:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {BCAN:NTRK1}	226889	NA	0	9	10	9
P-0041900-T01-IM6	SOMATIC	STK11	STK11	19	19	1207005	1212009	Exon 1 of STK11(+)	Intron of STK11(+):5Kb after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.93_c.290+4807del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5004	NA	0	16	10	17
P-0041985-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36208418	36209211	Promoter of KMT2B(+):502bp from tx start	Exon 1 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.291:KMT2B_chr19:g.36208418del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	793	NA	0	17	0	17
P-0042104-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313020	43610505	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):321bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1056:KIF5B_c.2136+321:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297485	NA	0	24	10	32
P-0006660-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1734584	1808678	Intron of TACC3(+):2Kb after exon 6	Intron of FGFR3(+):17bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+17:FGFR3_c.1591+1556:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FGFR3:TACC3}	74094	NA	0	16	10	16
P-0014385-T02-IM6	SOMATIC	EML4	ALK	2	2	29447676	42524546	Intron of ALK(-):650bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1890:EML4_c.3172+651:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076870	NA	0	366	10	364
P-0016054-T03-IM6	SOMATIC	MAP3K14	MAP3K14	17	17	43363676	44162424	Intron of MAP3K14(-):121bp after exon 5	Intron of KANSL1(-):3Kb before exon 5	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.1151+122:MAP3K14_chr17:g.44162424inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	798748	NA	0	153	10	179
P-0035974-T02-IM6	SOMATIC	MTOR	MTOR	1	1	11173112	11275114	Intron of MTOR(-):138bp before exon 54	Intron of MTOR(-):1Kb after exon 20	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.3117+1091_c.7301-138inv	PRECISE		MANUAL_OK	3to3	-	102002	NA	0	9	10	9
P-0042098-T01-IM6	SOMATIC	RAB3GAP2	AURKA	20	1	54945391	220440226	Exon 9 of AURKA(-)	Intron of RAB3GAP2(-):5Kb after exon 1	GRCh37	TRANSLOCATION	RAB3GAP2 (NM_012414) - AURKA (NM_003600) rearrangement: t(1;20)(q41;q13.2)(chr1:g.220440226::chr20:g.54945391)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RAB3GAP2:AURKA}	0	NA	0	5	10	20
P-0042173-T01-IM6	SOMATIC	MDM2	CADM3	12	1	69233222	159155314	Exon 11 of MDM2(+)	Intron of CADM3(+):4Kb before exon 2	GRCh37	TRANSLOCATION	MDM2 (NM_002392) - CADM3 (NM_021189) rearrangement: t(1;12)(q23.2;q15)(chr1:g.159155314::chr12:g.69233222)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MDM2:CADM3}	0	NA	0	11	10	11
P-0034921-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89693137	90317365	Intron of PTEN(+):129bp after exon 5	Intron of RNLS(-):15Kb after exon 4	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.492+129:PTEN_chr10:g.90317365del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	624228	NA	0	3	7	4
P-0035890-T02-IM6	SOMATIC	FAM46C	FAM46C	1	1	118165860	118247292	Exon 2 of FAM46C(+)	IGR: 99Kb before FAM46C(+)	GRCh37	DELETION	FAM46C (NM_017709) rearrangement: c.370:FAM46C_chr1:g.118247292del	PRECISE		MANUAL_OK	3to5	-	81432	NA	0	57	10	70
P-0036756-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39821998	42877290	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+2587:TMPRSS2_c.19-4454:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3055292	NA	0	12	10	13
P-0041695-T01-IM6	SOMATIC	CCDC30	ROS1	6	1	117643359	43087864	Intron of ROS1(-):802bp before exon 35	Intron of CCDC30(+):11Kb after exon 10	GRCh37	TRANSLOCATION	CCDC30 (NM_001080850) - ROS1 (NM_002944) fusion: t(1;6)(p34.2;q22.1)(chr1:g.43087864::chr6:g.117643359)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CCDC30:ROS1}	0	NA	0	172	10	183
P-0010250-T02-IM6	SOMATIC	RSPRY1	NUP93	16	16	56855412	57261873	Intron of NUP93(+):3bp before exon 7	Intron of RSPRY1(+):508bp after exon 11	GRCh37	DUPLICATION	RSPRY1 (NM_133368) - NUP93 (NM_014669) rearrangement: c.1273+508:RSPRY1_c.565-4:NUP93dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RSPRY1:NUP93}	406461	NA	0	26	10	26
P-0042155-T01-IM6	SOMATIC	LATS1	LATS1	6	6	150005510	150119587	Exon 4 of LATS1(-)	Intron of PCMT1(+):2Kb after exon 6	GRCh37	DELETION	LATS1 (NM_004690) rearrangement: c.715:LATS1_chr6:g.150119587del	PRECISE		MANUAL_OK	3to5	-	114077	NA	0	17	10	17
P-0019042-T05-IM6	SOMATIC	SOX17	SOX17	8	8	55343783	55372362	IGR: 27Kb before SOX17(+)	Exon 2 of SOX17(+)	GRCh37	INVERSION	SOX17 (NM_022454) rearrangement: c.1052:SOX17_chr8:g.55343783inv	PRECISE		MANUAL_OK	3to3	-	28579	NA	0	35	10	35
P-0011016-T02-IM6	SOMATIC	STK11	STK11	19	19	1218707	1220738	Intron of STK11(+):208bp after exon 2	Intron of STK11(+):22bp after exon 5	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.374+208_c.734+22del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2031	NA	0	3	10	3
P-0042142-T01-IM6	SOMATIC	WT1	WT1	11	11	32455162	32456372	Intron of WT1(-):1Kb after exon 1	Exon 1 of WT1(-)	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.520_c.646+1084del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1210	NA	0	3	9	3
P-0042142-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12013680	13697921	Intron of ETV6(+):7Kb after exon 4	IGR: 16Kb before GRIN2B(-)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.463+7185:ETV6_chr12:g.13697921inv	PRECISE		MANUAL_OK	5to5	-	1684241	NA	0	12	10	13
P-0042142-T01-IM6	SOMATIC	APC	APC	5	5	112178010	112183188	Exon 16 of APC(+)	Promoter of APC(+):110Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.6719:APC_chr5:g.112183188del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5178	NA	0	3	5	3
P-0042167-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874062	152085118	Exon 38 of KMT2C(-)	Intron of KMT2C(-):29Kb before exon 2	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.162-29358_c.8476del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	211056	NA	0	34	10	34
P-0042346-T01-IM6	SOMATIC	PLEKHM3	SF3B1	2	2	198283493	208708541	Intron of SF3B1(-):181bp before exon 5	Intron of PLEKHM3(-):15Kb before exon 8	GRCh37	DELETION	PLEKHM3 (NM_001080475) - SF3B1 (NM_012433) rearrangement: c.2109-15321:PLEKHM3_c.416-181:SF3B1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PLEKHM3:SF3B1}	10425048	NA	0	15	10	18
P-0042346-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	15	42873873	45823222	Intron of TMPRSS2(-):4Kb before exon 2	5-UTR of HMGN2P46(+):26Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q21.1;q22.3)(chr15:g.45823222::chr21:g.42873873)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	75	10	84
P-0001342-T03-IM6	SOMATIC	ATRX	MAGT1	X	X	77041447	77095101	Intron of ATRX(-):20bp after exon 1	Intron of MAGT1(-):2Kb after exon 8	GRCh37	DUPLICATION	ATRX (NM_000489) - MAGT1 (NM_032121) rearrangement: c.20+21:ATRX_c.997+1642:MAGT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ATRX:MAGT1}	53654	NA	0	6	10	11
P-0007136-T03-IM6	SOMATIC	CFDP1	ZFHX3	16	16	72827277	75353704	Exon 9 of ZFHX3(-)	Intron of CFDP1(-):15Kb before exon 6	GRCh37	DELETION	CFDP1 (NM_006324) - ZFHX3 (NM_006885) rearrangement: c.651-14624:CFDP1_c.9304:ZFHX3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CFDP1:ZFHX3}	2526427	NA	0	17	10	17
P-0032175-T02-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185191016	185192071	Exon 11 of MAP3K13(+)	Intron of MAP3K13(+):522bp after exon 11	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.1897_c.2430+522del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1055	NA	0	3	0	3
P-0033300-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39830404	42878752	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1125:TMPRSS2_c.19-12860:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3048348	NA	0	6	10	6
P-0033300-T02-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591142	72070476	Exon 13 of PIK3R1(+)	IGR: 42Kb before TNPO1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1735:PIK3R1_chr5:g.72070476del	PRECISE		MANUAL_OK	3to5	-	4479334	NA	0	10	10	10
P-0033342-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55184498	55222311	Intron of EGFR(+):25Kb before exon 2	Intron of EGFR(+):466bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-25481_c.889+466del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	37813	NA	0	4	5	4
P-0033799-T02-IM6	SOMATIC	KMT2A	KMT2A	11	4	118355175	150937415	Intron of KMT2A(+):146bp after exon 9	IGR: 62Kb before DCLK2(+)	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(4;11)(q31.23;q23.3)(chr4:g.150937415::chr11:g.118355175)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	6	0	8
P-0033799-T02-IM6	SOMATIC	TRAP1	SLX4	16	16	3634944	3767194	Intron of SLX4(-):72bp before exon 13	Intron of TRAP1(-):227bp after exon 1	GRCh37	DELETION	TRAP1 (NM_016292) - SLX4 (NM_032444) rearrangement: c.88+228:TRAP1_c.4637-72:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRAP1:SLX4}	132250	NA	0	13	10	12
P-0033799-T02-IM6	SOMATIC	MALT1	MALT1	18	18	56402552	56433959	Exon 13 of MALT1(+)	IGR: 95Kb before MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1594:MALT1_chr18:g.56433959del	PRECISE		MANUAL_OK	3to5	-	31407	NA	0	7	8	8
P-0039522-T03-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266144	41266668	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.141_c.465del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	524	NA	0	21	0	24
P-0040949-T01-IM6	SOMATIC	VTCN1	VTCN1	1	1	117685190	117695974	Promoter of VTCN1(-):1Kb from tx start	Exon 4 of VTCN1(-)	GRCh37	DUPLICATION	VTCN1 (NM_024626) rearrangement: c.463:VTCN1_chr1:g.117685190dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10784	NA	0	156	10	169
P-0040949-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11980445	12014935	Intron of ETV6(+):12Kb before exon 3	Intron of ETV6(+):7Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.164-11629_c.464-7423dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	34490	NA	0	46	10	46
P-0012630-T03-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39951997	42871596	3-UTR of ERG(-):82Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1480:TMPRSS2_chr21:g.39951997del	PRECISE		MANUAL_OK	3to5	-	2919599	NA	0	17	10	74
P-0012630-T03-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591142	143970832	Exon 13 of PIK3R1(+)	IGR: 420Kb before KCTD16(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1735:PIK3R1_chr5:g.143970832inv	PRECISE		MANUAL_OK	3to3	-	76379690	NA	0	21	10	24
P-0027951-T02-IM6	SOMATIC	AXIN1	AXIN1	16	16	363144	364683	Intron of AXIN1(-):1Kb after exon 3	Exon 3 of AXIN1(-)	GRCh37	INVERSION	AXIN1 (NM_003502) rearrangement: c.879_c.1019+1399inv	IMPPRECISE		MANUAL_OK	3to3	-	1539	NA	0	5	0	5
P-0027951-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36222643	42063303	Intron of KMT2B(+):165bp before exon 27	5-UTR of CEACAM21(+):22Kb before coding start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5438-166:KMT2B_chr19:g.42063303inv	PRECISE		MANUAL_OK	5to5	-	5840660	NA	0	14	10	14
P-0042558-T01-IM6	SOMATIC	FLT1	FLT1	16	13	443668	29041141	Promoter of LOC100134368(+):11Kb from tx start	Exon 3 of FLT1(-)	GRCh37	TRANSLOCATION	FLT1 (NM_002019) rearrangement: t(13;16)(q12.3;p13.3)(chr13:g.29041141::chr16:g.443668)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LOC100134368:FLT1}	0	NA	0	9	10	9
P-0014385-T03-IM6	SOMATIC	EML4	ALK	2	2	29447676	42524546	Intron of ALK(-):650bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1890:EML4_c.3172+651:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076870	NA	0	169	10	167
P-0019351-T03-IM6	SOMATIC	PALB2	PALB2	16	16	23619332	23625324	Exon 12 of PALB2(-)	Exon 11 of PALB2(-)	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.3201+1_c.3203del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5992	NA	0	3	8	3
P-0019351-T03-IM6	SOMATIC	STAT5B	STAT5B	17	17	40361148	40362362	Intron of STAT5B(-):1Kb after exon 15	Intron of STAT5B(-):43bp before exon 15	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement: c.1776-43_c.1906+1041inv	PRECISE		MANUAL_OK	3to3	-	1214	NA	0	8	10	8
P-0034774-T03-IM6	SOMATIC	HIST1H3A	HIST1H3A	6	6	26020832	26042531	Exon 1 of HIST1H3A(+)	Promoter of HIST1H2BB(-):923bp from tx start	GRCh37	INVERSION	HIST1H3A (NM_003529) rearrangement: c.115:HIST1H3A_chr6:g.26042531inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {HIST1H3A:HIST1H2BB}	21699	NA	0	4	9	4
P-0042332-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32944817	61534109	Intron of BRCA2(+):123bp after exon 19	IGR: 240Kb before MIR3169(-)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.8487+123:BRCA2_chr13:g.61534109del	PRECISE		MANUAL_OK	3to5	-	28589292	NA	0	30	10	30
P-0042481-T01-IM6	SOMATIC	SLC4A4	ROS1	6	4	117646662	72430718	Intron of ROS1(-):724bp after exon 33	Intron of SLC4A4(+):2Kb before exon 24	GRCh37	TRANSLOCATION	SLC4A4 (NM_001134742) - ROS1 (NM_002944) fusion: t(4;6)(q13.3;q22.1)(chr4:g.72430718::chr6:g.117646662)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SLC4A4:ROS1}	0	NA	0	200	10	318
P-0042549-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89652426	89653807	Intron of PTEN(+):1Kb before exon 2	Exon 2 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-1356_c.105del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1381	NA	0	10	10	10
P-0042438-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688353	128678923	Intron of EWSR1(+):123bp before exon 12	Intron of FLI1(+):128bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128678923::chr22:g.29688353)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	13	10	13
P-0004883-T03-IM6	SOMATIC	KMT2D	NLRP6	12	11	49420445	280348	Exon 48 of KMT2D(-)	Exon 4 of NLRP6(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) - NLRP6 (NM_138329) rearrangement: t(11;12)(p15.5;q13.12)(chr11:g.280348::chr12:g.49420445)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:NLRP6}	0	NA	0	51	10	62
P-0004883-T03-IM6	SOMATIC	ERBB3	ERBB3	12	12	56487515	58440275	Intron of ERBB3(+):32bp before exon 13	IGR: 105Kb before XRCC6BP1(+)	GRCh37	INVERSION	ERBB3 (NM_001982) rearrangement: c.1481-33:ERBB3_chr12:g.58440275inv	IMPPRECISE		MANUAL_OK	5to5	-	1952760	NA	0	24	0	29
P-0004883-T03-IM6	SOMATIC	RTEL1	RTEL1	20	1	62309382	231581635	Intron of RTEL1(+):115bp before exon 11	IGR: 30Kb before SNRPD2P2(-)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(1;20)(q42.2;q13.33)(chr1:g.231581635::chr20:g.62309382)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	57	10	61
P-0004883-T03-IM6	SOMATIC	SRC	SRC	20	16	36024780	56779027	Intron of SRC(+):66bp after exon 8	5-UTR of NUP93(+):3Kb before coding start	GRCh37	TRANSLOCATION	SRC (NM_198291) rearrangement: t(16;20)(q13;q11.23)(chr16:g.56779027::chr20:g.36024780)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	72	10	72
P-0014522-T01-IM6	SOMATIC	ABCC4	TMPRSS2	21	13	42873289	95689572	Intron of TMPRSS2(-): 3Kb before exon 2	Intron of ABCC4(-): 3Kb before exon 30	GRCh37	TRANSLOCATION	ABCC4 (NM_005845) -  TMPRSS2 (NM_001135099) Rearrangement : t(13;21)(q32.1;q22.3)(chr13:g.:95689572::chr21:g.42873289)	IMPRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (ABCC4-TMPRSS2)	0	NA	0	5	0	4
P-0042580-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315737	43610944	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):760bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1619:KIF5B_c.2136+760:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295207	NA	0	36	10	38
P-0004234-T02-IM6	SOMATIC	RAD52	RAD52	12	4	1039265	8469708	Exon 4 of RAD52(-)	Exon 9 of TRMT44(+)	GRCh37	TRANSLOCATION	RAD52 (NM_134424) rearrangement: t(4;12)(p16.1;p13.33)(chr4:g.8469708::chr12:g.1039265)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	10	22
P-0012132-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39867415	42868521	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1525:TMPRSS2_c.18+2872:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001106	NA	0	63	10	70
P-0012132-T03-IM6	SOMATIC	FUBP1	C4orf45	4	1	159924443	78420821	Intron of C4orf45(-):30Kb before exon 2	Intron of FUBP1(-):118bp after exon 18	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) - C4orf45 (NM_152543) rearrangement: t(1;4)(p31.1;q32.1)(chr1:g.78420821::chr4:g.159924443)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FUBP1:C4orf45}	0	NA	0	24	10	24
P-0021358-T03-IM6	SOMATIC	TP53	TP53	17	17	7482501	7579777	Promoter of SENP3-EIF4A1(+):17Kb from tx start	Intron of TP53(-):56bp before exon 3	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.75-56:TP53_chr17:g.7482501inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {SENP3-EIF4A1:TP53}	97276	NA	0	114	10	123
P-0021358-T03-IM6	SOMATIC	SESN1	TCF3	19	6	1620641	109415070	Intron of TCF3(-):325bp after exon 12	Exon 1 of SESN1(-)	GRCh37	TRANSLOCATION	SESN1 (NM_014454) - TCF3 (NM_001136139) rearrangement: t(6;19)(q21;p13.3)(chr6:g.109415070::chr19:g.1620641)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SESN1:TCF3}	0	NA	0	36	10	37
P-0042502-T01-IM6	SOMATIC	TP53	TP53	17	17	7473200	7576561	Intron of SENP3(+):473bp before exon 9	Intron of TP53(-):291bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+292:TP53_chr17:g.7473200del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	103361	NA	0	108	10	110
P-0042672-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	3627278	22008253	IGR: 41Kb before RFX3-AS1(+)	Intron of CDKN2B(-):543bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+544:CDKN2B_chr9:g.3627278del	PRECISE		MANUAL_OK	3to5	-	18380975	NA	0	34	10	33
P-0015646-T03-IM6	SOMATIC	ARID1A	ARID1A	1	1	27023416	43502903	Exon 1 of ARID1A(+)	IGR: 78Kb before SLC2A1-AS1(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.522:ARID1A_chr1:g.43502903inv	PRECISE		MANUAL_OK	3to3	-	16479487	NA	0	37	10	37
P-0015646-T03-IM6	SOMATIC	EML4	ALK	2	2	29448028	42479732	Intron of ALK(-):298bp after exon 19	Intron of EML4(+):4Kb before exon 3	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.209-3909:EML4_c.3172+299:ALKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13031704	NA	0	104	0	103
P-0015646-T03-IM6	SOMATIC	FAT1	FAT1	4	4	163601704	187629007	IGR: 446Kb before NAF1(-)	Exon 2 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.1975:FAT1_chr4:g.163601704inv	PRECISE		MANUAL_OK	3to3	-	24027303	NA	0	62	10	62
P-0022380-T03-IM6	SOMATIC	CCDC6	RET	10	10	43610659	61644070	Intron of RET(+):475bp after exon 11	Intron of CCDC6(-):22Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+21810:CCDC6_c.2136+475:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18033411	NA	0	167	10	208
P-0022380-T03-IM6	SOMATIC	TMEM25	KMT2A	11	11	118373445	118404038	Exon 27 of KMT2A(+)	Intron of TMEM25(+):96bp before exon 5	GRCh37	DUPLICATION	TMEM25 (NM_032780) - KMT2A (NM_001197104) rearrangement: c.674-97:TMEM25_c.6838:KMT2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMEM25:KMT2A}	30593	NA	0	16	10	16
P-0009024-T02-IM6	SOMATIC	MKRN1	BRAF	7	7	140156851	140493485	Intron of MKRN1(-):185bp before exon 5	Intron of BRAF(-):622bp after exon 8	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) fusion: c.772-185:MKRN1_c.1140+623:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MKRN1:BRAF}	336634	NA	0	59	10	64
P-0037818-T02-IM6	SOMATIC	CREBBP	SLX4	16	16	3644966	3823744	Intron of SLX4(-):366bp before exon 10	Intron of CREBBP(-):7bp after exon 13	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2463+8:CREBBP_c.2014-366:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CREBBP:SLX4}	178778	NA	0	213	10	220
P-0038524-T01-IM6	SOMATIC	RET	RET	10	10	43609421	126580357	Intron of RET(+):298bp after exon 10	IGR: 50Kb before ZRANB1(+)	GRCh37	INVERSION	RET (NM_020975) Rearrangement : c.1879+298:RET_chr10:g.126580357inv	PRECISE		MANUAL_OK	5to5	-	82970936	NA	0	131	10	157
P-0038524-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72822898	72939608	Intron of ZFHX3(-):151bp before exon 10	Intron of ZFHX3(-):16Kb before exon 4	GRCh37	DELETION	ZFHX3 (NM_006885 ) Rearrangement :c.9428-151_c.3217-15747del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	116710	NA	0	24	10	26
P-0006695-T01-IM5	SOMATIC	CD274	PDCD1LG2	9	9	5467932	5515011	3-UTR of CD274(+): 70bp after coding stop	5-UTR of PDCD1LG2(+): 8Kb before coding start	GRCh37	DELETION	CD274 (NM_01414) -  PDCD1LG2 (NM_025239) rearrangement: c.*70:CD274_c.-15+4208:PDCD1LG2del	PRECISE		MANUAL_OK	3to5	-	47079	NA	0	13	14	13
P-0010460-T01-IM5	SOMATIC	CREBBP	CREBBP	16	16	3690587	3842004	IGR: 12Kb before DNASE1(+)	Exon 5 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.1308_chr16:g.3690587del	PRECISE		MANUAL_OK	3to5	-	151417	NA	0	7	14	7
P-0010682-T01-IM5	SOMATIC	MLL3	MLL3	7	7	151884531	152128933	Exon 33 of MLL3(-)	Intron of MLL3(-): 4Kb after exon 1	GRCh37	DELETION	MLL3 (NM_170606) rearrangement: c.161+3778_c.4824del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	244402	NA	0	24	31	19
P-0011077-T01-IM5	SOMATIC	MSH6	MSH6	2	2	48026783	48030333	Exon 4 of MSH6(+)	Intron of MSH6(+): 226bp before exon 5	GRCh37	INVERSION	MSH6 (NM_000179) rearrangement: c.1661_c.3173-226inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	3550	NA	0	6	10	5
P-0012385-T01-IM5	SOMATIC	REL	REL	2	2	61135711	61147729	Intron of REL(+): 7Kb after exon 4	Exon 10 of REL(+)	GRCh37	DELETION	REL (NM_002908) Rearrangement :  c.394+7493_c.1039del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	12018	NA	0	10	31	10
P-0034616-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55090555	55221873	Intron of EGFR(+):3Kb after exon 1	Intron of EGFR(+):28bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+3497_c.889+28del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	131318	NA	0	210	10	231
P-0037052-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41254099	41266215	5-UTR of CTNNB1(+):11Kb before coding start	Exon 3 of CTNNB1(+)	GRCh37	INVERSION	CTNNB1 (NM_001904) rearrangement: c.212:CTNNB1_chr3:g.41254099inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	12116	NA	0	17	10	17
P-0038235-T01-IM6	SOMATIC	FGFR2	NOL4	18	10	31580817	123240418	Intron of NOL4(-):18Kb after exon 6	Intron of FGFR2(-):883bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - NOL4 (NM_003787) fusion: t(10;18)(q26.13;q12.1)(chr10:g.123240418::chr18:g.31580817)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:NOL4}	0	NA	0	34	10	34
P-0038345-T02-IM6	SOMATIC	MGA	MGA	15	15	41942833	41991005	IGR: 10Kb before MGA(+)	Intron of MGA(+):55bp before exon 4	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.2014-56:MGA_chr15:g.41942833del	IMPPRECISE		MANUAL_OK	3to5	-	48172	NA	0	17	0	19
P-0039168-T01-IM6	SOMATIC	EPHB1	EPHB1	21	3	17431751	134825587	IGR: 11Kb before MIR99AHG(+)	Intron of EPHB1(+):142bp after exon 4	GRCh37	TRANSLOCATION	EPHB1 (NM_004441) rearrangement: t(3;21)(q22.2;q21.1)(chr3:g.134825587::chr21:g.17431751)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0040254-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683573	128652561	Intron of EWSR1(+):450bp after exon 8	Intron of FLI1(+):643bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128652561::chr22:g.29683573)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	24	10	25
P-0042695-T01-IM6	SOMATIC	ERBB2	ERBB2	17	16	37883773	11921344	Exon 26 of ERBB2(+)	3-UTR of BCAR4(-):1Kb after coding stop	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(16;17)(p13.13;q12)(chr16:g.11921344::chr17:g.37883773)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	46	10	47
P-0042766-T01-IM6	SOMATIC	CALR	CALR	19	5	13054685	110677593	Exon 9 of CALR(+)	Intron of CAMK4(+):2Kb before exon 2	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(5;19)(q22.1;p13.2)(chr5:g.110677593::chr19:g.13054685)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	36	10	36
P-0042766-T01-IM6	SOMATIC	MCL1	MCL1	3	1	97440154	150551927	Intron of EPHA6(+):900bp after exon 15	Exon 1 of MCL1(-)	GRCh37	TRANSLOCATION	MCL1 (NM_021960) rearrangement: t(1;3)(q21.3;q11.2)(chr1:g.150551927::chr3:g.97440154)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	27
P-0042791-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151824873	151874403	IGR: 7Kb before KMT2C(-)	Exon 38 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.8135:KMT2C_chr7:g.151824873del	PRECISE		MANUAL_OK	3to5	-	49530	NA	0	59	10	60
P-0042835-T02-IM6	SOMATIC	AGK	BRAF	7	7	140497995	141279302	Intron of BRAF(-):2Kb after exon 7	Intron of AGK(+):14Kb before exon 3	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion: c.102-13644:AGK_c.980+2167:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	781307	NA	0	96	10	99
P-0042854-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49424136	49442184	Exon 42 of KMT2D(-)	Intron of KMT2D(-):257bp after exon 13	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.4131+258_c.13926inv	PRECISE		MANUAL_OK	3to3	-	18048	NA	0	5	10	5
P-0042854-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111759697	111884955	Intron of ACOXL(+):6Kb after exon 14	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.1281+6116:ACOXL_c.394+3239:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ACOXL:BCL2L11}	125258	NA	1	50	10	52
P-0042865-T01-IM6	SOMATIC	BAP1	BAP1	12	3	119130791	52440433	IGR: 289Kb before SRRM4(+)	Intron of BAP1(-):41bp before exon 9	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;12)(p21.1;q24.23)(chr3:g.52440433::chr12:g.119130791)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0042865-T01-IM6	SOMATIC	JAK3	JAK3	19	7	17953169	12881070	Exon 6 of JAK3(-)	IGR: 154Kb before ARL4A(+)	GRCh37	TRANSLOCATION	JAK3 (NM_000215) rearrangement: t(7;19)(p21.3;p13.11)(chr7:g.12881070::chr19:g.17953169)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	9	11
P-0042931-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157470094	157494807	Intron of ARID1B(+):9bp after exon 9	Intron of ARID1B(+):334bp before exon 11	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2879+9_c.3026-335del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	24713	NA	0	40	10	41
P-0042956-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187532779	187583264	Exon 14 of FAT1(-)	Intron of FAT1(-):1Kb after exon 3	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3580+1189_c.9614del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	50485	NA	0	17	10	17
P-0031005-T02-IM6	SOMATIC	RICTOR	RICTOR	5	5	38950470	44977508	Exon 31 of RICTOR(-)	IGR: 168Kb before MRPS30(+)	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: c.3480:RICTOR_chr5:g.44977508del	PRECISE		MANUAL_OK	3to5	-	6027038	NA	0	43	10	43
P-0042826-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855768	42870856	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):740bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-740:TMPRSS2_c.18+14519:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015088	NA	0	25	10	32
P-0042827-T01-IM6	SOMATIC	CDK4	TMEM132D	12	12	58144400	129804160	Intron of CDK4(-):38bp after exon 5	Intron of TMEM132D(-):18Kb after exon 4	GRCh37	DUPLICATION	CDK4 (NM_000075) - TMEM132D (NM_133448) rearrangement: c.632+39:CDK4_c.1299+18019:TMEM132Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CDK4:TMEM132D}	71659760	NA	0	3	10	8
P-0042987-T01-IM6	SOMATIC	CCND1	CCND1	11	11	60537575	69456269	Intron of MS4A15(+):1Kb before exon 4	Exon 1 of CCND1(+)	GRCh37	INVERSION	CCND1 (NM_053056) rearrangement: c.188:CCND1_chr11:g.60537575inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8918694	NA	0	7	10	7
P-0042990-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39890168	42868022	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1517:TMPRSS2_c.39+57418:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2977854	NA	0	74	10	77
P-0042990-T01-IM6	SOMATIC	LPA	HIST1H3H	6	6	27777879	161071099	Exon 1 of HIST1H3H(+)	Intron of LPA(-):270bp after exon 3	GRCh37	INVERSION	LPA (NM_005577) - HIST1H3H (NM_003536) rearrangement: c.209+271:LPA_c.28:HIST1H3Hinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LPA:HIST1H3H}	133293220	NA	0	17	10	26
P-0043069-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10602587	10603684	Exon 3 of KEAP1(-)	Intron of KEAP1(-):746bp before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-746_c.991del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1097	NA	0	214	10	234
P-0043076-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741652	1808926	Intron of TACC3(+):33bp before exon 12	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2358:FGFR3_c.2019-34:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67274	NA	0	197	10	225
P-0029852-T02-IM6	SOMATIC	DCLK1	EED	13	11	36386947	85989439	Intron of DCLK1(-):2Kb before exon 12	Intron of EED(+):1bp before exon 12	GRCh37	TRANSLOCATION	DCLK1 (NM_004734) - EED (NM_003797) rearrangement: t(11;13)(q14.2;q13.3)(chr11:g.85989439::chr13:g.36386947)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {DCLK1:EED}	0	NA	0	6	10	6
P-0029852-T02-IM6	SOMATIC	NOTCH2	NOTCH2	5	1	53933798	120458251	IGR: 22Kb before LOC102467080(-)	Exon 34 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;5)(p12;q11.2)(chr1:g.120458251::chr5:g.53933798)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0029852-T02-IM6	SOMATIC	RBM10	RBM10	X	X	46827953	47028740	5-UTR of JADE3(+):16Kb before coding start	Exon 3 of RBM10(+)	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.239:RBM10_chrX:g.46827953inv	PRECISE		MANUAL_OK	5to5	-	200787	NA	0	9	10	9
P-0037759-T03-IM6	SOMATIC	EPHA5	EPHA5	4	4	66241266	66242724	Intron of EPHA5(-):1Kb after exon 9	Exon 9 of EPHA5(-)	GRCh37	DELETION	EPHA5 (NM_004439) rearrangement: c.1848_c.1856+1450del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1458	NA	0	51	10	54
P-0037759-T03-IM6	SOMATIC	GBAS	EGFR	7	7	55268444	56048007	Intron of EGFR(+):338bp after exon 24	Intron of GBAS(+):1Kb before exon 4	GRCh37	DUPLICATION	GBAS (NM_001483) - EGFR (NM_005228) rearrangement: c.279-1159:GBAS_c.2946+338:EGFRdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GBAS:EGFR}	779563	NA	0	89	10	89
P-0037759-T03-IM6	SOMATIC	KMT2C	KMT2C	7	7	151827709	151859482	IGR: 4Kb before KMT2C(-)	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11180:KMT2C_chr7:g.151827709del	PRECISE		MANUAL_OK	3to5	-	31773	NA	0	66	10	72
P-0027016-T03-IM6	SOMATIC	H3F3A	H3F3A	1	1	226252112	226376420	Exon 2 of H3F3A(+)	Promoter of ACBD3(-):44Kb from tx start	GRCh37	INVERSION	H3F3A (NM_002107) rearrangement: c.60:H3F3A_chr1:g.226376420inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {H3F3A:ACBD3}	124308	NA	0	5	10	6
P-0038201-T03-IM6	SOMATIC	EML4	ALK	2	2	29447748	42523645	Intron of ALK(-):578bp after exon 19	Intron of EML4(+):989bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+989:EML4_c.3172+579:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075897	NA	0	43	10	43
P-0043029-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39857064	42878149	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1728:TMPRSS2_c.18+13223:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3021085	NA	0	67	10	72
P-0043120-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115277026	115281540	Intron of CSDE1(-):36bp after exon 8	Intron of CSDE1(-):772bp after exon 4	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.337+773_c.720+37inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4514	NA	0	12	10	13
P-0043120-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31412349	31424523	Intron of DROSHA(-):1Kb before exon 30	Intron of DROSHA(-):10bp after exon 27	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.3261+11_c.3526-1355del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	12174	NA	0	52	10	53
P-0043145-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970962	30796986	Exon 2 of CDKN2A(-)	IGR: 408Kb before LINC01242(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.396:CDKN2A_chr9:g.30796986del	PRECISE		MANUAL_OK	3to5	-	8826024	NA	0	28	10	28
P-0043292-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57484877	57486231	Intron of GNAS(+):18bp after exon 10	3-UTR of GNAS(+):19Kb after coding stop	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.839+18:GNAS_chr20:g.57486231inv	IMPPRECISE		MANUAL_OK	3to3	-	1354	NA	0	45	0	44
P-0043297-T01-IM6	SOMATIC	STAT5B	STAT5B	17	17	40375506	41626578	Exon 5 of STAT5B(-)	Promoter of ETV4(-):21Kb from tx start	GRCh37	DELETION	STAT5B (NM_012448) rearrangement: c.444:STAT5B_chr17:g.41626578del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ETV4:STAT5B}	1251072	NA	0	143	10	249
P-0043297-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76940137	95562235	Intron of ATRX(-):52bp before exon 9	IGR: 30Kb before BRDTP1(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.663-52:ATRX_chrX:g.95562235del	PRECISE		MANUAL_OK	3to5	-	18622098	NA	0	19	10	20
P-0031368-T04-IM6	SOMATIC	EML4	ALK	2	2	29447191	42527227	Intron of ALK(-):797bp before exon 20	Intron of EML4(+):1Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1154:EML4_c.3173-797:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080036	NA	0	97	10	96
P-0002675-T01-IM3	SOMATIC	BICC1	FGFR2	10	10	60456648	123241096	Intron of BICC1(+): 5Kb before exon 3	Intron of FGFR2(-): 2Kb before exon 18	GRCh37	INVERSION		PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62784448	NA	0	87	56	87
P-0006885-T01-IM5	SOMATIC	FGFR2	BICC1	10	10	60456595	123240587	Intron of BICC1(+): 5Kb before exon 3	Intron of FGFR2(-): 1Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) rearrangement: c.2302-1052:FGFR2_c.238-5239:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62783992	NA	0	77	70	74
P-0007041-T01-IM5	SOMATIC	MAP2K1	MAP2K1	15	15	66737005	66738953	Exon 5 of MAP2K1(+)	Intron of MAP2K1(+): 2Kb after exon 5	GRCh37	INVERSION	MAP2K1 (NM_002755) rearrangement :  c.528_568+1908inv	PRECISE		MANUAL_OK	5to5	-	1948	NA	0	6	3	5
P-0007041-T01-IM5	SOMATIC	DOT1L	DOT1L	19	19	2201972	2216514	Intron of DOT1L(+): 727bp before exon 9	Exon 20 of DOT1L(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) rearrangement :  c.708-727_2158dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	14542	NA	0	6	8	6
P-0007205-T01-IM5	SOMATIC	SHBG	TP53	17	17	7522278	7580649	5-UTR of SHBG(+): 14Kb before coding start	5-UTR of TP53(-): 737bp before coding start	GRCh37	INVERSION	SHBG (NM_001040) - TP53 (NM_000546) rearrangement : chr17:g.7522278_c.-28-709:TP53inv	PRECISE		MANUAL_OK	3to3	Transcript fusion (SHBG-TP53)	58371	NA	0	19	15	19
P-0007520-T01-IM5	SOMATIC	RPS6KB2	CNIH2	11	11	66046223	67201584	Intron of CNIH2(+): 215bp after exon 1	Intron of RPS6KB2(+): 56bp after exon 11	GRCh37	DUPLICATION	RPS6KB2 (NM_003952) - CNIH2 (NM_182553) -  Rearrangement : c.81+215:CNIH2_c.969+56:RPS6KB2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (RPS6KB2-CNIH2)	1155361	NA	0	41	39	38
P-0008286-T01-IM5	SOMATIC	SMARCD1	PTPRR	12	12	50480765	71101772	Intron of SMARCD1(+): 104bp after exon 4	Intron of PTPRR(-): 7Kb before exon 7	GRCh37	INVERSION	SMARCD1 (NM_003076) - PTPRR (NM_002849) rearrangement: c.531+104:SMARCD1_c.1008-6669:PTPRRinv	PRECISE		MANUAL_OK	3to3	Protein fusion: out of frame (SMARCD1-PTPRR)	20621007	NA	0	10	14	6
P-0008658-T01-IM5	SOMATIC	FGFR2	KIAA1217	10	10	24647524	123241193	Intron of KIAA1217(+): 22Kb before exon 4	Intron of FGFR2(-): 2Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - KIAA1217 (NM_019590) Rearrangement: c.2302-1658:FGFR2_c.355-22274:KIAA1217inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-KIAA1217)	98593669	NA	0	55	74	54
P-0009694-T01-IM5	SOMATIC	PRKAR1B	BRAF	7	7	593658	140491855	Intron of PRKAR1B(-): 3Kb before exon 10	Intron of BRAF(-): 2Kb after exon 8	GRCh37	DUPLICATION	PRKAR1B (NM_001164758) -BRAF (NM_004333) Rearrangement :  c.892-2551:PRKAR1B_c.1140+2253:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (PRKAR1B-BRAF)	139898197	NA	0	25	43	25
P-0010701-T01-IM5	SOMATIC	BCL2L11	BCL2L11	2	2	111880061	111883815	5-UTR of BCL2L11(+): 1Kb before coding start	Intron of BCL2L11(+): 2Kb after exon 2	GRCh37	DELETION	BCL2L11 (NM_138621) Rearrangement : c.-13-1249_c.394+2099del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3754	NA	0	18	23	16
P-0011329-T01-IM5	SOMATIC	FGFR2	FGFR2	10	10	65610482	123240184	IGR: 329Kb before REEP3(+)	Intron of FGFR2(-): 649bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) Rearrangement :  chr10:g.65610482_ c.2302-649inv	PRECISE		MANUAL_OK	3to3	-	57629702	NA	0	63	57	33
P-0011394-T01-IM5	SOMATIC	FGFR2	LAMC1	10	1	123240042	183109471	Intron of FGFR2(-): 507bp before exon 18	Intron of LAMC1(+): 68bp before exon 27	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - LAMC1 (NM_002293) rearrangment: t(1;10)(q25.3;q26.13)(chr1:g.183109471::chr10:g.123240042 )	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-LAMC1)	0	NA	0	27	30	27
P-0011394-T01-IM5	SOMATIC	FGFR2	RABGAP1L	10	1	123240065	174863117	Intron of FGFR2(-): 530bp before exon 18	Intron of RABGAP1L(+): 16Kb after exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - RABGAP1L (NM_014857) rearrangement: t(1;10)(q25.1;q26.13)(chr1:g.174863117::chr10:g.123240065 )	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-RABGAP1L)	0	NA	0	102	87	122
P-0011516-T01-IM5	SOMATIC	CTNNA3	FGFR2	10	10	68543761	123241940	Intron of CTNNA3(-): 8Kb before exon 8	Intron of FGFR2(-): 249bp before exon 17	GRCh37	DUPLICATION	CTNNA3 (NM_013266) -FGFR2 (NM_000141) Rearrangement : c.1048-8479:CTNNA3_c.2301+1272:FGFR2dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (CTNNA3-FGFR2)	54698179	NA	0	28	33	28
P-0011516-T01-IM5	SOMATIC	FGFR2	SH2C	19	10	447779	123243182	Intron of SHC2(-): 7Kb before exon 2	Intron of FGFR2(-): 30bp after exon 16	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - SH2C (NM_012435) Rearrangement : t(10;19)(q26.13;p13.3)(chr10:g.123243182::chr19:g.447779)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-SHC2)	0	NA	0	62	33	37
P-0012376-T01-IM5	SOMATIC	FGFR2	FGFR2	10	1	123241306	205735259	Intron of FGFR2(-): 2Kb before exon 18	IGR: 2Kb before RAB7L1(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(1;10)(q32.1;q26.13)(chr1:g.205735259::chr10:g.123241306 )	PRECISE		MANUAL_OK	3to5	-	0	NA	0	79	67	78
P-0012423-T02-IM6	SOMATIC	FGFR2	NOL4	18	10	31563418	123242055	Intron of NOL4(-):25Kb before exon 7	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - NOL4 (NM_003787) fusion (FGFR2 exons 1-17 fused in-frame with NOL4 exons 7-11): t(10;18)(q26.13;q12.1)(chr10:g.123242055::chr18:g.31563418)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:NOL4}	0	NA	0	7	10	6
P-0012639-T01-IM5	SOMATIC	FGFR2	SEPT10	10	2	123240798	110325395	Intron of FGFR2(-): 1Kb before exon 18	Exon 6 of SEPT10(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - SEPT10 (NM_144710) rearrangement: t(2;10)(q13;q26.13)(chr2:g.110325395::chr10:g.123240798)	PRECISE		MANUAL_OK	5to3	Protein fusion: mid-exon (FGFR2-SEPT10)	0	NA	0	16	18	14
P-0012666-T01-IM5	SOMATIC	FGFR2	AMOT	X	10	112058354	123241762	Intron of AMOT(-): 232bp after exon 3	Intron of FGFR2(-): 71bp before exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - AMOT (NM_001113490) Rearrangement : t(10;X)(q26.13.1;q23)(chr10:g.123241762::chrX:g.112058354)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-AMOT)	0	NA	1	87	36	83
P-0013174-T01-IM5	SOMATIC	FGFR2	BICC1	10	10	60566060	123240123	Intron of BICC1(+): 284bp before exon 16	Intron of FGFR2(-): 588bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 with BICC1 exons 16-21): c.2302-588:FGFR2_c.2182-284:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62674063	NA	0	6	14	6
P-0013405-T01-IM5	SOMATIC	FGFR2	KIAA1217	10	10	24582017	123241766	Intron of KIAA1217(+): 73Kb after exon 3	Intron of FGFR2(-): 75bp before exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - KIAA1217 (NM_019590) Rearrangement: c.2301+1446:FGFR2_c.354+73179:KIAA1217inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-KIAA1217)	98659749	NA	0	84	114	77
P-0020164-T01-IM6	SOMATIC	FGFR2	ADAM9	10	8	123242738	38901161	Intron of FGFR2(-):473bp after exon 17	Intron of ADAM9(+):2Kb after exon 12	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ADAM9 (NM_003816) fusion: t(8;10(p11.22;q26.13)(chr8:g.38901161::chr10:g.123242738)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:ADAM9}	0	NA	0	63	10	90
P-0026846-T01-IM6	SOMATIC	UPF1	UPF1	19	9	18974414	31342057	Exon 19 of UPF1(+)	IGR: 953Kb before LINC01242(-)	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(9;19)(p21.1;p13.11)(chr9:g.31342057::chr19:g.18974414)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	14
P-0029335-T01-IM6	SOMATIC	CIC	CIC	19	19	42738483	42797392	Intron of GSK3A(-):21bp after exon 6	Exon 15 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: chr19:g.42738483_c.3754:CICdel	PRECISE		MANUAL_OK	3to5	-	58909	NA	0	13	10	13
P-0030378-T01-IM6	SOMATIC	PTCH1	PTCH1	9	9	27937753	98239907	IGR: 10Kb before LINGO2(-)	Exon 10 of PTCH1(-)	GRCh37	INVERSION	PTCH1 (NM_000264) Rearrangement : chr9:g.27937753_c.1425:PTCH1inv	PRECISE		MANUAL_OK	3to3	-	70302154	NA	0	80	10	80
P-0043132-T01-IM6	SOMATIC	RARA	RARA	17	17	38499106	60911308	Intron of RARA(+):5Kb before exon 3	5-UTR of MIR548W(+):357Kb before coding start	GRCh37	DELETION	RARA (NM_000964) rearrangement: c.179-5462:RARA_chr17:g.60911308del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {RARA:MIR548W}	22412202	NA	0	24	10	25
P-0004089-T01-IM5	SOMATIC	FGFR2	VCL	10	10	75848963	123242749	Exon 9 of VCL(+)	Intron of FGFR2(-): 463bp after exon 16	GRCh37	INVERSION	FGFR2(NM_000141) - VCL (NM_014000) Rearrangement : c.2301+463:FGFR2_c.1032:VCLinv	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (FGFR2-VCL)	47393786	NA	0	90	73	226
P-0016640-T01-IM6	SOMATIC	FGFR2	TTC28	22	10	28666001	123241944	Intron of TTC28(-):26Kb after exon 5	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000142) - TTC28 (NM_001145418) Rearrangement : t(10;22)(q26.11;q12.1)(chr10:g.123241944::chr22:g.28666001)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:TTC28}	0	NA	0	10	10	11
P-0030925-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48582062	48584972	Intron of SMAD4(+):699bp after exon 5	Intron of SMAD4(+):146bp after exon 7	GRCh37	DUPLICATION	SMAD4 (NM_005359) rearrangement: c.667+699_c.904+146dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	2910	NA	0	18	10	18
P-0035838-T01-IM6	SOMATIC	RB1	ITM2B	13	13	48828581	48941678	Intron of ITM2B(+):509bp after exon 2	Exon 10 of RB1(+)	GRCh37	DUPLICATION	RB1 (NM_000321) - ITM2B (NM_021999) Rearrangement : c.988:RB1_c.246+509:ITM2Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RB1:ITM2B}	113097	NA	0	3	5	6
P-0035970-T01-IM6	SOMATIC	ARID2	ARID2	12	6	46285690	131763564	Exon 17 of ARID2(+)	IGR: 131Kb before ARG1(+)	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(6;12)(q23.2;q12)(chr6:g.131763564::chr12:g.46285690)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	28	10	27
P-0003781-T02-IM6	SOMATIC	EGFR	EGFR	12	7	24696686	55268974	5-UTR of SOX5(-):1Mb before coding start	Exon 25 of EGFR(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;12)(p11.2;p12.1)(chr7:g.55268974::chr12:g.24696686)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:SOX5}	0	NA	0	55	0	55
P-0015479-T02-IM6	SOMATIC	TP53	TP53	17	17	7576610	62224960	Intron of TP53(-):242bp after exon 9	3-UTR of TEX2(-):1Kb after coding stop	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+243:TP53_chr17:g.62224960inv	PRECISE		MANUAL_OK	3to3	-	54648350	NA	0	106	10	106
P-0015479-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42836610	42840140	3-UTR of TMPRSS2(-):1Kb after coding stop	Intron of TMPRSS2(-):182bp after exon 12	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.1425+183:TMPRSS2_chr21:g.42836610del	PRECISE		MANUAL_OK	3to5	-	3530	NA	0	21	9	21
P-0023910-T11-IM6	SOMATIC	FAT1	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) Rearrangement : chr4:g.187523949_c.11482+108inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	69	10	69
P-0025501-T02-IM6	SOMATIC	FLT1	FLT1	13	13	28964003	102073583	Exon 13 of FLT1(-)	IGR: 31Kb before ITGBL1(+)	GRCh37	INVERSION	FLT1 (NM_002019) rearrangement: c.1899:FLT1_chr13:g.102073583inv	PRECISE		MANUAL_OK	3to3	-	73109580	NA	0	35	10	34
P-0027460-T01-IM6	SOMATIC	RPS6KA4	MACROD1	11	11	63829973	64138071	Intron of MACROD1(-):47Kb before exon 4	Exon 16 of RPS6KA4(+)	GRCh37	INVERSION	RPS6KA4 (NM_003942) - MACROD1 (NM_014067) rearrangement: c.1994:RPS6KA4_c.518-47220:MACROD1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RPS6KA4:MACROD1}	308098	NA	0	15	10	15
P-0028777-T03-IM6	SOMATIC	NEGR1	NEGR1	1	1	71762310	72524925	IGR: 106Kb before NEGR1(-)	Intron of NEGR1(-):124Kb before exon 2	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.177-123931:NEGR1_chr1:g.71762310del	IMPPRECISE		MANUAL_OK	3to5	-	762615	NA	0	7	0	7
P-0028777-T03-IM6	SOMATIC	KMT2C	KMT2C	7	7	151879190	151961941	Exon 36 of KMT2C(-)	Intron of KMT2C(-):181bp after exon 8	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.1184+182_c.5755del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	82751	NA	0	39	10	45
P-0032909-T05-IM6	SOMATIC	EWSR1	WT1	22	11	29683182	32416950	Intron of EWSR1(+):59bp after exon 8	Intron of WT1(-):852bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416950::chr22:g.29683182)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	105	10	110
P-0036604-T03-IM6	SOMATIC	EWSR1	WT1	22	11	29683594	32414690	Intron of EWSR1(+):471bp after exon 8	Intron of WT1(-):389bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414690::chr22:g.29683594)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	17	10	17
P-0036672-T02-IM6	SOMATIC	MTOR	MTOR	1	1	11181865	32222726	Intron of MTOR(-):170bp after exon 48	Intron of BAI2(-):75bp after exon 3	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.6810+171:MTOR_chr1:g.32222726inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	21040861	NA	0	9	10	10
P-0036672-T02-IM6	SOMATIC	PAX8	PAX8	2	2	113984853	114033174	Intron of PAX8(-):20bp before exon 10	Intron of PAX8(-):3Kb after exon 2	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.25+2773_c.1088-20inv	PRECISE		MANUAL_OK	3to3	-	48321	NA	0	11	10	11
P-0037164-T02-IM6	SOMATIC	BAP1	BAP1	3	3	52403726	52437465	Intron of DNAH1(+):114bp before exon 38	Exon 13 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1696:BAP1_chr3:g.52403726del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	33739	NA	0	33	10	77
P-0042780-T01-IM6	SOMATIC	ERBB3	ERBB3	16	12	11917462	56493955	3-UTR of BCAR4(-):5Kb after coding stop	Intron of ERBB3(+):2bp before exon 26	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(12;16)(q13.2;p13.13)(chr12:g.56493955::chr16:g.11917462)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	34	10	39
P-0043181-T01-IM6	SOMATIC	EPC1	INHBA	10	7	32575797	41735073	Intron of EPC1(-):27bp before exon 9	Intron of INHBA(-):5Kb after exon 2	GRCh37	TRANSLOCATION	EPC1 (NM_025209) - INHBA (NM_002192) rearrangement: t(7;10)(p14.1;p11.22)(chr7:g.41735073::chr10:g.32575797)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EPC1:INHBA}	0	NA	0	24	10	25
P-0043319-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	31395819	31421652	IGR: 5Kb before DROSHA(-)	Intron of DROSHA(-):168bp before exon 29	GRCh37	DUPLICATION	DROSHA (NM_013235) rearrangement: c.3420-168:DROSHA_chr5:g.31395819dup	PRECISE		MANUAL_OK	5to3	-	25833	NA	0	3	6	3
P-0043416-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831305	42873916	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3800:TMPRSS2_c.19-13761:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3042611	NA	0	24	10	25
P-0043422-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42863128	42868186	Intron of TMPRSS2(-):2Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-1681_c.350-1608del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5058	NA	0	18	10	20
P-0043556-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	30003025	38285947	3-UTR of MIR548O2(-):105Kb after coding stop	Exon 5 of FGFR1(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.464:FGFR1_chr8:g.30003025inv	PRECISE		MANUAL_OK	5to5	-	8282922	NA	0	9	10	9
P-0043629-T01-IM6	SOMATIC	CPM	MDM2	12	12	69230349	69306786	Intron of MDM2(+):102bp before exon 10	Intron of CPM(-):20Kb after exon 2	GRCh37	INVERSION	CPM (NM_001005502) - MDM2 (NM_002392) rearrangement: c.160+19672:CPM_c.841-103:MDM2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CPM:MDM2}	76437	NA	0	5	10	5
P-0043630-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	37983666	42871937	IGR: 88Kb before SIM2(+)	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1821:TMPRSS2_chr21:g.37983666del	PRECISE		MANUAL_OK	3to5	-	4888271	NA	0	12	10	12
P-0043644-T01-IM6	SOMATIC	DDR2	DDR2	5	1	77776577	162725080	Promoter of SCAMP1(+):120Kb from tx start	Exon 6 of DDR2(+)	GRCh37	TRANSLOCATION	DDR2 (NM_006182) rearrangement: t(1;5)(q23.3;q14.1)(chr1:g.162725080::chr5:g.77776577)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	193	10	192
P-0043704-T01-IM6	SOMATIC	RET	KIF5B	10	10	32306364	43610331	Intron of KIF5B(-):77bp before exon 24	Intron of RET(+):147bp after exon 11	GRCh37	INVERSION	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.2136+147:RET_c.2545-77:KIF5Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RET:KIF5B}	11303967	NA	0	26	10	26
P-0043817-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42836304	42845179	Promoter of TMPRSS2(-):173bp from tx start	Intron of TMPRSS2(-):72bp after exon 9	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.1010+73:TMPRSS2_chr21:g.42836304del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	8875	NA	0	15	0	15
P-0043823-T01-IM6	SOMATIC	SFTA3	NUF2	14	1	36956644	163309186	Intron of SFTA3(-):4Kb after exon 2	Exon 8 of NUF2(+)	GRCh37	TRANSLOCATION	SFTA3 (NM_001101341) - NUF2 (NM_031423) rearrangement: t(1;14)(q23.3;q13.3)(chr1:g.163309186::chr14:g.36956644)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SFTA3:NUF2}	0	NA	0	5	10	6
P-0043823-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	12	15288174	66426103	Intron of NOTCH3(-):161bp after exon 24	IGR: 9Kb before MIR6074(-)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(12;19)(q14.3;p13.12)(chr12:g.66426103::chr19:g.15288174)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	24	10	24
P-0043874-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138539922	140490001	Intron of KIAA1549(-):3Kb before exon 17	Intron of BRAF(-):3Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5248-2907:KIAA1549_c.1141-2617:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1950079	NA	0	26	10	29
P-0014310-T02-IM6	SOMATIC	EML4	ALK	2	2	29447544	42497999	Intron of ALK(-):782bp after exon 19	Intron of EML4(+):6Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+6128:EML4_c.3172+783:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13050455	NA	0	7	10	34
P-0009710-T02-IM6	SOMATIC	RBM10	RBM10	X	X	39384785	47034288	IGR: 158Kb before LINC01282(-)	Intron of RBM10(+):129bp before exon 6	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.698-130:RBM10_chrX:g.39384785del	PRECISE		MANUAL_OK	3to5	-	7649503	NA	0	10	10	10
P-0012895-T03-IM6	SOMATIC	SMARCA4	SMARCA4	19	9	11144367	79802479	Intron of SMARCA4(+):75bp before exon 27	Intron of VPS13A(+):10Kb after exon 1	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(9;19)(q21.2;p13.2)(chr9:g.79802479::chr19:g.11144367)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	7
P-0012895-T03-IM6	SOMATIC	SETD2	SETD2	3	3	47129778	47398715	Intron of SETD2(-):41bp before exon 10	IGR: 24Kb before PTPN23(+)	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.5143-41:SETD2_chr3:g.47398715del	PRECISE		MANUAL_OK	3to5	-	268937	NA	0	7	9	7
P-0036062-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27057923	27087977	Exon 3 of ARID1A(+)	Intron of ARID1A(+):13bp after exon 6	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1631_c.2251+13del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	30054	NA	0	65	10	69
P-0044036-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488037	57493457	Intron of NAB2(+):357bp before exon 7	Intron of STAT6(-):92bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-358:NAB2_c.1744+93:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5420	NA	0	46	10	45
P-0044042-T01-IM6	SOMATIC	EML4	ALK	2	2	29447727	42506309	Intron of ALK(-):599bp after exon 19	Intron of EML4(+):2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1681:EML4_c.3172+600:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058582	NA	0	28	10	28
P-0044176-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72993349	72999556	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-):178Kb before coding start	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.696:ZFHX3_chr16:g.72999556inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6207	NA	0	29	10	41
P-0029222-T03-IM6	SOMATIC	RUFY1	RET	10	5	43610037	179025890	Exon 11 of RET(+)	Intron of RUFY1(+):68bp after exon 14	GRCh37	TRANSLOCATION	RUFY1 (NM_025158) - RET (NM_020975) fusion: t(5;10)(q35.3;q11.21)(chr5:g.179025890::chr10:g.43610037)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RUFY1:RET}	0	NA	0	28	10	28
P-0009401-T03-IM6	SOMATIC	H3F3C	H3F3C	19	12	47152928	31945098	Exon 4 of DACT3(-)	Exon 1 of H3F3C(-)	GRCh37	TRANSLOCATION	H3F3C (NM_001013699) rearrangement: t(12;19)(p11.21;q13.32)(chr12:g.31945098::chr19:g.47152928)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	59	10	75
P-0009401-T03-IM6	SOMATIC	MAP2K2	MAP2K2	19	16	4117131	22298639	Intron of MAP2K2(-):285bp after exon 2	3-UTR of EEF2K(+):62Kb after coding stop	GRCh37	TRANSLOCATION	MAP2K2 (NM_030662) rearrangement: t(16;19)(p12.2;p13.3)(chr16:g.22298639::chr19:g.4117131)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	10
P-0013345-T02-IM6	SOMATIC	YES1	PTPRM	18	18	756543	7842967	Intron of YES1(-):13bp after exon 2	Intron of PTPRM(+):45Kb before exon 3	GRCh37	INVERSION	YES1 (NM_005433) - PTPRM (NM_001105244) rearrangement: c.271+14:YES1_c.197-45137:PTPRMinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {YES1:PTPRM}	7086424	NA	0	11	10	12
P-0019765-T04-IM6	SOMATIC	BRD4	BRD4	19	10	15376225	1065652	Exon 5 of BRD4(-)	Exon 5 of IDI2(-)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(10;19)(p15.3;p13.12)(chr10:g.1065652::chr19:g.15376225)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	21	10	21
P-0025146-T02-IM6	SOMATIC	TCF3	TCF3	19	19	1612399	1878693	Exon 17 of TCF3(-)	Intron of ABHD17A(-):1Kb before exon 5	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1620:TCF3_chr19:g.1878693inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	266294	NA	0	4	10	35
P-0036235-T02-IM6	SOMATIC	FOXA1	FOXA1	14	14	37143996	38064211	Intron of PAX9(+):1Kb before exon 5	5-UTR of FOXA1(-):4Kb before coding start	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.-34:FOXA1_chr14:g.37143996inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PAX9:FOXA1}	920215	NA	0	7	10	7
P-0036235-T02-IM6	SOMATIC	KLK2	ETV1	19	7	51377605	13975427	Intron of KLK2(+):371bp before exon 2	Exon 7 of ETV1(-)	GRCh37	TRANSLOCATION	KLK2 (NM_005551) - ETV1 (NM_001163147) rearrangement: t(7;19)(p21.2;q13.33)(chr7:g.13975427::chr19:g.51377605)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KLK2:ETV1}	0	NA	0	5	10	5
P-0044256-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39848108	42869107	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):938bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+939:TMPRSS2_c.18+22179:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3020999	NA	0	87	10	162
P-0022337-T06-IM6	SOMATIC	FGFR2	TBC1D4	13	10	75946350	123241723	Intron of TBC1D4(-):10Kb before exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - TBC1D4 (NM_014832) fusion: t(10;13)(q26.13;q22.2)(chr10:g.123241723::chr13:g.75946350)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:TBC1D4}	0	NA	0	9	0	9
P-0008441-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39886960	42868118	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1613:TMPRSS2_c.39+60626:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2981158	NA	0	47	10	49
P-0008769-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39852370	42872368	Intron of ERG(-):18Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2252:TMPRSS2_c.18+17917:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019998	NA	0	234	10	270
P-0017308-T02-IM6	SOMATIC	CDK12	CDK12	17	17	37615432	37618377	Promoter of CDK12(+):2Kb from tx start	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.53:CDK12_chr17:g.37615432del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2945	NA	0	101	10	104
P-0017308-T02-IM6	SOMATIC	DNMT1	DNMT1	X	19	154756585	10274098	Intron of TMLHE(-):2Kb before exon 3	Intron of DNMT1(-):62bp before exon 11	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(19;X)(p13.2;q28)(chr19:g.10274098::chrX:g.154756585)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	24	10	24
P-0044377-T01-IM6	SOMATIC	TP53	TLK2	17	17	7577946	60560417	Intron of TP53(-):230bp after exon 6	Intron of TLK2(+):2Kb after exon 2	GRCh37	INVERSION	TP53 (NM_000546) - TLK2 (NM_006852) rearrangement: c.672+231:TP53_c.81+1850:TLK2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TP53:TLK2}	52982471	NA	0	16	10	57
P-0044377-T01-IM6	SOMATIC	PDCD1LG2	PDCD1LG2	9	9	5563359	24818667	Intron of PDCD1LG2(+):148bp after exon 6	IGR: 275Kb before IZUMO3(-)	GRCh37	INVERSION	PDCD1LG2 (NM_025239) rearrangement: c.816+148:PDCD1LG2_chr9:g.24818667inv	PRECISE		MANUAL_OK	3to3	-	19255308	NA	0	29	10	29
P-0001055-T03-IM6	SOMATIC	NAB2	STAT6	12	12	57487938	57493208	Intron of NAB2(+):456bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-457:NAB2_c.1760:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5270	NA	0	51	10	50
P-0005636-T03-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9780379	12569292	Intron of PIK3CD(+):79bp after exon 11	3-UTR of VPS13D(+):275Kb after coding stop	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.1470+79:PIK3CD_chr1:g.12569292del	PRECISE		MANUAL_OK	3to5	-	2788913	NA	0	44	10	46
P-0005636-T03-IM6	SOMATIC	MTOR	MTOR	15	1	37509514	11184865	IGR: 244Kb before MIR8063(-)	Intron of MTOR(-):175bp before exon 47	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;15)(p36.22;q14)(chr1:g.11184865:chr15:g.37509514)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0005636-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39834655	42875117	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4760:TMPRSS2_c.19-17111:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040462	NA	0	74	10	73
P-0018568-T03-IM6	SOMATIC	MDM2	MDM2	12	12	69229527	69230197	Intron of MDM2(+):81bp before exon 9	Intron of MDM2(+):254bp before exon 10	GRCh37	DUPLICATION	MDM2 (NM_002392) rearrangement: c.685-82_c.841-255dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	670	NA	0	22	10	23
P-0018568-T03-IM6	SOMATIC	EZH1	EZH1	17	17	40502896	40855737	5-UTR of STAT3(-):35Kb before coding start	Intron of EZH1(-):20bp after exon 19	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.2098+21:EZH1_chr17:g.40502896del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {EZH1:STAT3}	352841	NA	0	17	10	17
P-0018568-T03-IM6	SOMATIC	NOTCH1	SEC16A	9	9	139365807	139391519	Intron of SEC16A(-):619bp after exon 4	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) - SEC16A (NM_014866) rearrangement: c.6672:NOTCH1_c.3704+620:SEC16Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH1:SEC16A}	25712	NA	0	65	10	68
P-0032731-T03-IM6	SOMATIC	KMT2A	EPS15	11	1	118352725	51908021	Exon 7 of KMT2A(+)	Intron of EPS15(-):2Kb before exon 12	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) - EPS15 (NM_001981) rearrangement: t(1;11)(p32.3;q23.3)(chr1:g.51908021::chr11:g.118352725)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2A:EPS15}	0	NA	0	5	10	5
P-0032731-T03-IM6	SOMATIC	GLI1	GLI1	12	2	57859147	44262425	Intron of GLI1(+):109bp after exon 5	IGR: 134Kb before PPM1B(+)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(2;12)(p21;q13.3)(chr2:g.44262425::chr12:g.57859147)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	15
P-0032731-T03-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111884266	193889470	Intron of BCL2L11(+):3Kb after exon 2	IGR: 275Kb before PCGEM1(+)	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+2550:BCL2L11_chr2:g.193889470del	PRECISE		MANUAL_OK	3to5	-	82005204	NA	0	11	10	11
P-0036499-T03-IM6	SOMATIC	NTRK1	NTRK1	1	1	156843748	201743980	Exon 8 of NTRK1(+)	Intron of NAV1(+):6Kb before exon 2	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1174:NTRK1_chr1:g.201743980inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	44900232	NA	0	138	0	138
P-0036499-T03-IM6	SOMATIC	IRS2	IRS2	15	13	57613785	110436723	5-UTR of LINC01413(+):3Kb before coding start	Exon 1 of IRS2(-)	GRCh37	TRANSLOCATION	IRS2 (NM_003749) rearrangement: t(13;15)(q34;q21.3)(chr13:g.110436723::chr15:g.57613785)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	66	10	70
P-0044414-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39982152	42875260	3-UTR of ERG(-):52Kb after coding stop	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4617:TMPRSS2_chr21:g.39982152del	PRECISE		MANUAL_OK	3to5	-	2893108	NA	0	11	10	11
P-0044432-T01-IM6	SOMATIC	EML4	ALK	2	2	29448344	42543991	Exon 19 of ALK(-)	Intron of EML4(+):575bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2057-576:EML4_c.3155:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13095647	NA	0	40	10	38
P-0044470-T01-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	4	128230200	23486215	Intron of MAPKAP1(-):50bp after exon 10	IGR: 286Kb before MIR548AJ2(-)	GRCh37	TRANSLOCATION	MAPKAP1 (NM_001006617) rearrangement: t(4;9)(p15.2;q33.3)(chr4:g.23486215::chr9:g.128230200)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	39	10	40
P-0044533-T01-IM6	SOMATIC	SMARCB1	ADAM32	22	8	24143234	39001501	Exon 4 of SMARCB1(+)	Intron of ADAM32(+):3Kb before exon 4	GRCh37	TRANSLOCATION	SMARCB1 (NM_003073) - ADAM32 (NM_145004) rearrangement: t(8;22)(p11.22;q11.23)(chr8:g.39001501::chr22:g.24143234)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCB1:ADAM32}	0	NA	0	54	10	62
P-0044536-T01-IM6	SOMATIC	NF1	NF1	17	17	29556495	33639065	Intron of NF1(+):12bp after exon 21	IGR: 38Kb before SLFN11(-)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.2850+12:NF1_chr17:g.33639065inv	IMPPRECISE		MANUAL_OK	3to3	-	4082570	NA	0	7	0	7
P-0024083-T02-IM6	SOMATIC	INHA	INHA	2	2	37386053	220440232	Promoter of EIF2AK2(-):54Kb from tx start	Exon 2 of INHA(+)	GRCh37	INVERSION	INHA (NM_002191) rearrangement: c.1085:INHA_chr2:g.37386053inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {INHA:EIF2AK2}	183054179	NA	0	100	10	99
P-0024083-T02-IM6	SOMATIC	LAMA4	ESR1	6	6	112437814	152163649	Intron of LAMA4(-):618bp before exon 36	Intron of ESR1(+):82bp before exon 3	GRCh37	INVERSION	LAMA4 (NM_001105206) - ESR1 (NM_001122740) rearrangement: c.4982-618:LAMA4_c.453-83:ESR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LAMA4:ESR1}	39725835	NA	0	46	10	47
P-0032997-T02-IM6	SOMATIC	ATF6B	NOTCH4	6	6	32094752	32164832	Intron of ATF6B(-):127bp after exon 4	Exon 28 of NOTCH4(-)	GRCh37	DUPLICATION	ATF6B (NM_004381) - NOTCH4 (NM_004557) rearrangement: c.342+128:ATF6B_c.5070:NOTCH4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATF6B:NOTCH4}	70080	NA	0	42	10	45
P-0044178-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1806246	1807624	Exon 9 of FGFR3(+)	Exon 13 of FGFR3(+)	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.1265_c.1793inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1378	NA	0	2	7	2
P-0019831-T06-IM6	SOMATIC	FLT4	FLT4	5	5	179915438	180046438	IGR: 6Kb before CNOT6(+)	Intron of FLT4(-):72bp before exon 19	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.2648-72:FLT4_chr5:g.179915438del	IMPPRECISE		MANUAL_OK	3to5	-	131000	NA	0	64	0	66
P-0044612-T01-IM6	SOMATIC	PPIP5K1	TP53BP1	15	15	43739671	43838107	Exon 13 of TP53BP1(-)	Intron of PPIP5K1(-):6Kb before exon 28	GRCh37	DELETION	PPIP5K1 (NM_014659) - TP53BP1 (NM_001141980) rearrangement: c.3311-6326:PPIP5K1_c.2729:TP53BP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PPIP5K1:TP53BP1}	98436	NA	0	48	10	57
P-0020986-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	53132170	55138451	IGR: 215Kb before SPATA18(+)	Intron of PDGFRA(+):109bp before exon 9	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: chr4:g.53132170_c.1238-110:PDGFRAdel	PRECISE		MANUAL_OK	3to5	-	2006281	NA	0	37	10	41
P-0021014-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151866191	152004903	Intron of KMT2C(-):79bp after exon 41	Intron of KMT2C(-):2Kb after exon 6	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.9517+80_c.849+2148dup	PRECISE		MANUAL_OK	5to3	Duplication of 35 exons : out of frame	138712	NA	0	9	10	9
P-0044470-T02-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	4	128230200	23486215	Intron of MAPKAP1(-):50bp after exon 10	IGR: 286Kb before MIR548AJ2(-)	GRCh37	TRANSLOCATION	MAPKAP1 (NM_001006617) rearrangement: t(4;9)(p15.2;q33.3)(chr4:g.23486215::chr9:g.128230200)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	6
P-0042835-T03-IM6	SOMATIC	AGK	BRAF	7	7	140497995	141279302	Intron of BRAF(-):2Kb after exon 7	Intron of AGK(+):14Kb before exon 3	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion: c.102-13644:AGK_c.980+2167:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	781307	NA	0	90	10	93
P-0042835-T03-IM6	SOMATIC	BRAF	WEE2	7	7	140498912	141424909	Intron of BRAF(-):1Kb after exon 7	Exon 9 of WEE2(+)	GRCh37	INVERSION	BRAF (NM_004333) - WEE2 (NM_001105558) rearrangement: c.980+1250:BRAF_c.1305:WEE2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRAF:WEE2}	925997	NA	0	81	10	84
P-0029161-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683658	32416136	Intron of EWSR1(+):535bp after exon 8	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416136::chr22:g.29683658)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	182	10	182
P-0044916-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148543784	148612082	Intron of EZH2(-):94bp before exon 3	IGR: 73Kb before GHET1(+)	GRCh37	INVERSION	EZH2 (NM_004456) rearrangement: c.118-94:EZH2_chr7:g.148612082inv	PRECISE		MANUAL_OK	3to3	-	68298	NA	0	6	8	6
P-0044970-T01-IM6	SOMATIC	NF1	NF1	17	17	29479599	29508858	Intron of NF1(+):3Kb before exon 2	Intron of NF1(+):55bp after exon 7	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.61-3402_c.730+55inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	29259	NA	0	10	10	10
P-0044970-T01-IM6	SOMATIC	KMT2B	EIF4A1	19	17	36213774	7478471	Intron of KMT2B(+):122bp before exon 6	Exon 4 of EIF4A1(+)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) - EIF4A1 (NM_001204510) rearrangement: t(17;19)(p13.1;q13.12)(chr17:g.7478471::chr19:g.36213774)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2B:EIF4A1}	0	NA	0	6	10	15
P-0009691-T04-IM6	SOMATIC	RAD50	RAD50	5	5	98439690	131923208	IGR: 175Kb before LOC100289230(+)	Intron of RAD50(+):45bp before exon 6	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.757-46:RAD50_chr5:g.98439690del	PRECISE		MANUAL_OK	3to5	-	33483518	NA	0	11	10	12
P-0027245-T03-IM6	SOMATIC	ERG	TMPRSS2	21	21	39868705	42872225	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+1582:ERG_c.56-2109:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3003520	NA	0	110	10	109
P-0039885-T02-IM6	SOMATIC	BRIP1	DNMT1	19	17	10288034	59886338	Exon 5 of DNMT1(-)	Intron of BRIP1(-):220bp before exon 7	GRCh37	TRANSLOCATION	BRIP1 (NM_032043) - DNMT1 (NM_001379) rearrangement: t(17;19)(q23.2;p13.2)(chr17:g.59886338::chr19:g.10288034)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BRIP1:DNMT1}	0	NA	0	77	10	80
P-0000508-T02-IM6	SOMATIC	SLC47A1	MAP2K4	17	17	12013590	19443565	Intron of MAP2K4(+):101bp before exon 6	Intron of SLC47A1(+):2Kb before exon 2	GRCh37	DUPLICATION	SLC47A1 (NM_018242) - MAP2K4 (NM_003010) Rearrangement :  c.136-2141:SLC47A1_c.634-102:MAP2K4dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SLC47A1:MAP2K4}	7429975	NA	0	6	0	6
P-0000508-T02-IM6	SOMATIC	PIK3CA	PIK3CA	3	3	152218364	178916777	IGR: 161Kb before TMEM14E(-)	Exon 2 of PIK3CA(+)	GRCh37	INVERSION	PIK3CA (NM_006218) Rearrangement: c.164:PIK3CA_chr3:g.152218364inv	PRECISE		MANUAL_OK	5to5	-	26698413	NA	0	2	5	2
P-0002398-T03-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42867878	13988492	Intron of TMPRSS2(-):1Kb before exon 3	Intron of ETV1(-):10Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.13988492::chr21:g.42867878)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS2:ETV1}	0	NA	0	126	10	127
P-0002398-T03-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32164151	39581756	Exon 29 of NOTCH4(-)	Intron of KIF6(-):662bp before exon 6	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.5248:NOTCH4_chr6:g.39581756inv	PRECISE		MANUAL_OK	3to3	-	7417605	NA	0	2	6	2
P-0002398-T03-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139396837	139400395	Exon 28 of NOTCH1(-)	Intron of NOTCH1(-):62bp before exon 25	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.4015-62_c.5271del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3558	NA	0	9	10	9
P-0004339-T04-IM6	SOMATIC	KMT2C	KMT2C	7	3	151860908	197675580	Exon 43 of KMT2C(-)	5-UTR of IQCG(-):59Kb before coding start	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(3;7)(q29;q36.1)(chr3:g.197675580::chr7:g.151860908)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	25	10	25
P-0005114-T03-IM6	SOMATIC	MET	MET	7	7	116411895	116414045	Intron of MET(+):7bp before exon 14	Intron of MET(+):889bp before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2888-8_c.3029-890del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2150	NA	0	90	10	96
P-0006365-T01-IM5	SOMATIC	ATM	ATM	11	11	108172328	108176400	Intron of ATM(+): 47bp before exon 35	Intron of ATM(+): 821bp after exon 37	GRCh37	DUPLICATION	ATM (NM_000051) rearrangement: c.5178-47_c.5674+821dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons: out of frame	4072	NA	0	8	23	8
P-0010011-T01-IM5	SOMATIC	PAX8	PAX8	2	2	113986861	114024360	Intron of PAX8(-): 2Kb before exon 10	Intron of PAX8(-): 12Kb after exon 2	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1088-2028_c.25+11587del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons: out of frame	37499	NA	0	19	33	18
P-0012008-T02-IM6	SOMATIC	SDC4	ROS1	20	6	43964050	117652099	Intron of SDC4(-):371bp after exon 2	Intron of ROS1(-):1Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) reciprocal fusion (SDC4 exons 1-2 with ROS1 exons 32-43): t(6;20) (q22.1; q13.12) (chr6:g.117652119::chr20:g.43964016)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	45	0	46
P-0018389-T02-IM6	SOMATIC	EEA1	EGFR	12	7	93221108	55241575	Intron of EEA1(-):579bp after exon 12	Intron of EGFR(+):38bp before exon 18	GRCh37	TRANSLOCATION	EEA1 (NM_003566) - EGFR (NM_005228) rearrangement: t(7;12)(p11.2;q22)(chr7:g.55241575::chr12:g.932211089)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {EEA1:EGFR}	0	NA	0	125	10	149
P-0026974-T03-IM6	SOMATIC	FUBP1	FUBP1	1	1	78422188	85991712	Intron of FUBP1(-):68bp after exon 17	5-UTR of DDAH1(-):205Kb before coding start	GRCh37	INVERSION	FUBP1 (NM_003902) rearrangement: c.1705+69:FUBP1_chr1:g.85991712inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7569524	NA	0	7	10	8
P-0028065-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1621775	1648889	Intron of TCF3(-):61bp after exon 10	Intron of TCF3(-):1Kb after exon 1	GRCh37	DUPLICATION	TCF3 (NM_001136139) rearrangement: c.72+1287_c.955+62dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : out of frame	27114	NA	0	4	10	4
P-0028065-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10250440	10261451	Exon 33 of DNMT1(-)	Intron of DNMT1(-):622bp after exon 23	GRCh37	DUPLICATION	DNMT1 (NM_001379) rearrangement: c.2217+623_c.3812dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11011	NA	0	12	10	12
P-0031771-T01-IM6	SOMATIC	ETV1	ETV1	7	7	13360295	13975478	IGR: 571Kb before ETV1(-)	Exon 7 of ETV1(-)	GRCh37	INVERSION	ETV1 (NM_001163147) rearrangement: c.409:ETV1_chr7:g.13360295inv	PRECISE		MANUAL_OK	5to5	-	615183	NA	0	4	10	5
P-0032174-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15355730	15412763	Intron of BRD4(-):157bp before exon 12	IGR: 52Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2159-157:BRD4_chr19:g.15412763del	PRECISE		MANUAL_OK	3to5	-	57033	NA	0	8	10	13
P-0032251-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120457863	120464289	3-UTR of NOTCH2(-):65bp after coding stop	Intron of NOTCH2(-):46bp after exon 29	GRCh37	DUPLICATION	NOTCH2 (NM_024408) Rearrangement : c.5310+47:NOTCH2_c.*66dup	IMPPRECISE		MANUAL_OK	5to3	-	6426	NA	0	22	0	23
P-0032357-T01-IM6	SOMATIC	IKZF3	ERBB2	17	17	37866502	37946894	Intron of ERBB2(+):48bp after exon 6	Intron of IKZF3(-):774bp after exon 5	GRCh37	INVERSION	IKZF3 (NM_01248) - ERBB2 (NM_004448) rearrangement: c.592+775:IKZF3_c.759+48inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {IKZF3:ERBB2}	80392	NA	0	1001	10	2179
P-0032703-T01-IM6	SOMATIC	TP53	TP53	20	17	48334484	7579551	IGR: 85Kb before B4GALT5(-)	Exon 4 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.13)(chr17:g.7579551::chr20:g.48334484)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	31	10	32
P-0033545-T04-IM6	SOMATIC	SMAD3	SMAD3	15	15	67431643	67473639	Intron of SMAD3(+):26Kb before exon 2	Exon 6 of SMAD3(+)	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.207-25590_c.719del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	41996	NA	0	47	10	51
P-0033709-T01-IM6	SOMATIC	RIMS1	ERBB2	17	6	37879964	73069535	Intron of ERBB2(+):51bp after exon 18	Intron of RIMS1(+):31Kb before exon 18	GRCh37	TRANSLOCATION	RIMS1 (NM_014989) - ERBB2 (NM_004448) rearrangement: t(6;17)(q13;q12)(chr6:g.73069535::chr17:g.37879964)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RIMS1:ERBB2}	0	NA	0	30	10	29
P-0034325-T01-IM6	SOMATIC	FGF3	SHANK2	11	11	69627563	70821028	Intron of FGF3(-):2Kb before exon 3	Exon 5 of SHANK2(-)	GRCh37	DUPLICATION	FGF3 (NM_005247) - SHANK2 (NM_012309) rearrangement: c.325-2095:FGF3_c.551:SHANK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGF3:SHANK2}	1193465	NA	0	74	10	81
P-0034333-T01-IM6	SOMATIC	WT1	WT1	11	11	32445021	32449512	Intron of WT1(-):4Kb after exon 3	Exon 3 of WT1(-)	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.862_c.872+4481del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4491	NA	1	94	10	100
P-0034876-T01-IM6	SOMATIC	DICER1	DICER1	14	14	95563026	95564321	Exon 25 of DICER1(-)	Intron of DICER1(-):1Kb before exon 25	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.4207-1271_c.4231del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1295	NA	0	2	5	2
P-0034876-T01-IM6	SOMATIC	PAXBP1	TMPRSS2	21	21	34136337	42867134	Intron of PAXBP1(-):321bp after exon 3	Intron of TMPRSS2(-):629bp before exon 3	GRCh37	DUPLICATION	PAXBP1 (NM_016631) - TMPRSS2 (NM_001135099) rearrangement: c.649+322:PAXBP1_c.127-629:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PAXBP1:TMPRSS2}	8730797	NA	0	4	10	5
P-0036013-T01-IM6	SOMATIC	RIT1	RIT1	1	1	155870365	155925721	Exon 6 of RIT1(-)	Intron of ARHGEF2(-):961bp before exon 14	GRCh37	INVERSION	RIT1 (NM_006912) Rearrangement : c.474:RIT1_c.1632-961:ARHGEF2inv	PRECISE		MANUAL_OK	3to3	-	55356	NA	0	110	10	115
P-0036013-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52568810	52649165	5-UTR of NT5DC2(-):10Kb before coding start	Intron of PBRM1(-):201bp after exon 16	GRCh37	INVERSION	PBRM1 (NM_018313) Rearrangement :  c.-141:NT5DC2_c.1924+202:PBRMinv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	80355	NA	0	5	10	5
P-0036013-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63280801	63412217	IGR: 124Kb before AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424)  Rearrangement : chrX:g.63280801_c.950del	PRECISE		MANUAL_OK	3to5	-	131416	NA	0	3	10	6
P-0036113-T01-IM6	SOMATIC	SMARCA4	RBFOX2	22	19	36286648	11170738	Intron of RBFOX2(-):48Kb after exon 2	Exon 34 of SMARCA4(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) -  RBFOX2 (NM_001082578) rearrangement: t(19;22)(p13.2;q12.3)(chr19:g.11170738::chr22:g.36286648)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	10	31
P-0036233-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68965554	69483080	Intron of PREX2(+):73bp after exon 9	Intron of C8orf34(+):38Kb after exon 7	GRCh37	INVERSION	PREX2 (NM_024870) Rearrangement: c.1093+73:PREX2_chr8:g.69483080inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	517526	NA	0	9	0	9
P-0036256-T01-IM6	SOMATIC	TAP2	TAP2	7	6	118149779	32798010	IGR: 285Kb before ANKRD7(+)	Intron of TAP2(-):33bp after exon 9	GRCh37	TRANSLOCATION	TAP2 (NM_018833) rearrangement: t(6;7)(p21.32;q31.31)(chr6:g.32798010::chr7:g.118149779)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	53	10	58
P-0036302-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876926	42867658	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon2 fused with ERG exon4) : c.40-59382:TMPRSS2_c.127-1153:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2990732	NA	0	31	10	31
P-0037070-T01-IM6	SOMATIC	IGF2	IGF2	11	11	2161458	121451136	Exon 2 of IGF2(-)	Intron of SORL1(+):3Kb after exon 25	GRCh37	DELETION	IGF2 (NM_001127598) rearrangement: c.69:IGF2_chr11:g.121451136del	PRECISE		MANUAL_OK	3to5	-	119289678	NA	0	51	10	58
P-0037233-T01-IM6	SOMATIC	MVP	RAD54L	16	1	29850306	46736383	Intron of MVP(+):1Kb before exon 7	Exon 11 of RAD54L(+)	GRCh37	TRANSLOCATION	MVP (NM_005115) - RAD54L (NM_001142548) rearrangement: t(1;16)(p34.1;p11.2)(chr1:g.46736383::chr16:g.29850306)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MVP:RAD54L}	0	NA	0	15	10	22
P-0037234-T01-IM6	SOMATIC	YAP1	TFE3	X	11	48896547	101983566	Intron of TFE3(-):84bp after exon 3	Intron of YAP1(+):1Kb before exon 2	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) - TFE3 (NM_006521) fusion: t(X;11)(p11.23;q21.1)(chrX:g.48896547::chr11:g.101983566)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {YAP1:TFE3}	0	NA	0	12	10	12
P-0037291-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14224544	14628381	Intron of PRKACA(-):401bp after exon 1	Intron of DNAJB1(-):523bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion (DNAJB1 exon 1 fused to PRKACA exons 2-10): c.212-523:DNAJB1_ c.46+3770:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	403837	NA	0	8	10	9
P-0037293-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875226	42871354	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1238:TMPRSS2_c.40-57682:ERGinv	PRECISE		MANUAL_OK	3to3	-	2996128	NA	0	137	10	133
P-0037339-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59820512	63588451	Intron of BRIP1(-):17bp before exon 16	IGR: 43Kb before CEP112(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.2258-17:BRIP1_chr17:g.63588451inv	PRECISE		MANUAL_OK	3to3	-	3767939	NA	0	79	10	78
P-0037339-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63526346	64687220	Intron of AXIN2(-):126bp before exon 11	Intron of PRKCA(+):2Kb after exon 8	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.2406-126:AXIN2_chr17:g.64687220del	PRECISE		MANUAL_OK	3to5	-	1160874	NA	0	51	10	55
P-0037369-T01-IM6	SOMATIC	NAV1	ELF3	1	1	201681201	201982837	Intron of NAV1(+):743bp before exon 2	Intron of ELF3(+):119bp before exon 8	GRCh37	DELETION	NAV1 (NM_020443) - ELF3 (NM_004433) rearrangement: c.758-744:NAV1_c.806-120:ELF3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {NAV1:ELF3}	301636	NA	0	12	0	12
P-0037372-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157150497	157196643	Exon 2 of ARID1B(+)	Intron of ARID1B(+):4Kb after exon 3	GRCh37	DUPLICATION	ARID1B (NM_020732) rearrangement: c.1505_c.1602+385dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	46146	NA	0	56	10	56
P-0037446-T01-IM6	SOMATIC	CYSLTR2	RB1	13	13	49046106	49281009	Intron of RB1(+):1Kb before exon 24	Exon 1 of CYSLTR2(+)	GRCh37	DUPLICATION	CYSLTR2 (NM_020377) - RB1 (NM_000321) rearrangement: c.56:CYSLTR2_c.2490-1390:RB1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CYSLTR2:RB1}	234903	NA	0	43	10	43
P-0037462-T01-IM6	SOMATIC	WNT1	KMT2D	12	12	49374915	49435992	Intron of WNT1(+):19bp before exon 4	Exon 28 of KMT2D(-)	GRCh37	INVERSION	WNT1 (NM_005430) - KMT2D (NM_003482) rearrangement: c.625-20:WNT1_c.5989:KMT2Dinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {WNT1:KMT2D}	61077	NA	0	50	10	49
P-0037462-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52645529	52651483	Intron of PBRM1(-):2Kb before exon 17	Exon 15 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.1613_1925-1558dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5954	NA	0	30	10	30
P-0037478-T01-IM6	SOMATIC	ABL1	PIP5K1B	9	9	71504032	133760393	Exon 7 of PIP5K1B(+)	Exon 11 of ABL1(+)	GRCh37	DUPLICATION	ABL1 (NM_005157) -PIP5K1B(NM_003558) Rearrangement : c.2716:ABL1_c.454:PIP5K1Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ABL1:PIP5K1B}	62256361	NA	0	36	10	37
P-0037484-T01-IM6	SOMATIC	LMLN	TSC2	16	3	2121541	197695630	Exon 18 of TSC2(+)	Intron of LMLN(+):6Kb before exon 2	GRCh37	TRANSLOCATION	LMLN (NM_001136049) - TSC2 (NM_000548) Rearrangement : t(3,16)(q29; p13.3) (chr3:g.197695630::chr16:g.2121541)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LMLN:TSC2}	0	NA	0	77	10	82
P-0037484-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18957960	18961810	Intron of UPF1(+):592bp before exon 3	Intron of UPF1(+):133bp after exon 5	GRCh37	DUPLICATION	UPF1 (NM_002911) Rearrangement : c.372-593_c.810+133dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	3850	NA	0	41	10	43
P-0037620-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39808241	42869064	Intron of ERG(-):9Kb after exon 2	Intron of TMPRSS2(-):981bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+982:TMPRSS2_c.236+9086:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3060823	NA	0	3	6	3
P-0037658-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	35	10	39
P-0037658-T01-IM6	SOMATIC	IKZF1	IKZF1	16	7	16894213	50455196	IGR: 302Kb before XYLT1(-)	Intron of IKZF1(+):28bp after exon 6	GRCh37	TRANSLOCATION	IKZF1 (NM_006060) rearrangement: t(7,16)(p12.2;p12.3)(chr7:g.50455196::chr16:g.16894213)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	23	10	23
P-0037658-T01-IM6	SOMATIC	RAF1	RAF1	3	1	12650135	199307409	Intron of RAF1(-):129bp after exon 5	IGR: 322Kb before LINC01221(+)	GRCh37	TRANSLOCATION	RAF1 (NM_002880) rearrangement: t(1,3)(q32.1;p25.2)(chr1:g.199307409::chr3:g.12650135)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	21	10	20
P-0037759-T01-IM6	SOMATIC	EPHA5	EPHA5	4	4	66241266	66242724	Intron of EPHA5(-):1Kb after exon 9	Exon 9 of EPHA5(-)	GRCh37	DELETION	EPHA5 (NM_004439): Rearrangement: c.1848_c.1856+1450del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1458	NA	0	48	10	49
P-0037759-T01-IM6	SOMATIC	GBAS	EGFR	7	7	55268444	56048007	Intron of EGFR(+):338bp after exon 24	Intron of GBAS(+):1Kb before exon 4	GRCh37	DUPLICATION	GBAS (NM_001483) - EGFR(NM_005228) Rearrangement: c.2946+338:EGFR_c.279-1159:GBASdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GBAS:EGFR}	779563	NA	0	153	10	159
P-0037759-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151827709	151859482	IGR: 4Kb before KMT2C(-)	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) Rearrangement: c.11180_c.*6208del	PRECISE		MANUAL_OK	3to5	-	31773	NA	0	76	10	76
P-0037759-T02-IM6	SOMATIC	EPHA5	EPHA5	4	4	66241266	66242724	Intron of EPHA5(-):1Kb after exon 9	Exon 9 of EPHA5(-)	GRCh37	DELETION	EPHA5 (NM_004439) Rearrangement : c.1848_c.1856+1450	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1458	NA	0	16	10	16
P-0037759-T02-IM6	SOMATIC	GBAS	GBAS	7	7	55268444	56048007	Intron of EGFR(+):338bp after exon 24	Intron of GBAS(+):1Kb before exon 4	GRCh37	DUPLICATION	GBAS (NM_001483) Rearrangement : c.279-1159:GBAS_c.2946+338:EGFRdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GBAS:EGFR}	779563	NA	0	77	10	79
P-0037759-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151827709	151859482	IGR: 4Kb before KMT2C(-)	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) Rearrangement : c.11180_c.*6208del	PRECISE		MANUAL_OK	3to5	-	31773	NA	0	34	10	35
P-0037810-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46531693	46563923	Intron of PIK3R3(-):32bp after exon 5	Intron of PIK3R3(-):18Kb before exon 2	GRCh37	DUPLICATION	PIK3R3 (NM_003629) rearrangement: c.107-17501_c.621+33dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	32230	NA	0	27	10	27
P-0037891-T01-IM6	SOMATIC	MAP3K13	IGF1R	15	3	99500351	185040460	Exon 21 of IGF1R(+)	Intron of MAP3K13(+):37Kb after exon 2	GRCh37	TRANSLOCATION	MAP3K13 (NM_004721) - IGF1R (NM_000875) rearrangement: t(3,15)(q27.2;q26.3)(chr3:g.185040460::chr15:g.99500351)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAP3K13:IGF1R}	0	NA	0	32	10	33
P-0037904-T01-IM6	SOMATIC	IRS1	IRS1	2	2	227329627	227662807	IGR: 194Kb before MIR5702(-)	Exon 1 of IRS1(-)	GRCh37	DUPLICATION	IRS1 (NM_005544) rearrangement: c.648:IRS1_chr2:g.227329627dup	PRECISE		MANUAL_OK	5to3	-	333180	NA	0	4	9	5
P-0037909-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62326916	62425706	Intron of RTEL1(+):83bp after exon 34	5-UTR of ZBTB46(-):47Kb before coding start	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.3724+83:RTEL1_chr20:g.62425706del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	98790	NA	0	5	10	5
P-0037909-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123108022	123156541	5-UTR of STAG2(+):48Kb before coding start	Intron of STAG2(+):20bp after exon 3	GRCh37	INVERSION	STAG2 (NM_001042749) rearrangement: c.-163+13306_c.44+20inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	48519	NA	0	3	5	3
P-0037919-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	34150608	40710478	3-UTR of FER1L4(-):45Kb after coding stop	Intron of PTPRT(-):43bp after exon 31	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.4329+44:PTPRT_chr20:g.34150608del	PRECISE		MANUAL_OK	3to5	-	6559870	NA	0	3	7	3
P-0037920-T01-IM6	SOMATIC	HLA	DMB	6	6	32815732	32904545	Exon 8 of TAP1(-)	Intron of HLA-DMB(-):403bp after exon 3	GRCh37	DELETION	HLA-DMB (NM_002118) - TAP1 (NM_000593) rearrangement: c.622+404:HLA-DMB_c.1884:TAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HLA-DMB:TAP1}	88813	NA	0	4	10	4
P-0037962-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	72242069	72554634	Intron of NEGR1(-):89bp before exon 3	Intron of NEGR1(-):154Kb before exon 2	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.177-153640_c.410-89del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	312565	NA	0	6	10	6
P-0038253-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737158	1808852	Intron of TACC3(+):106bp after exon 7	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142)  -TACC3( NM_006342) Fusion (FGFR3 exon18 fused with TACC3 exon8) : c.2284:FGFR3_c.1644+106:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71694	NA	0	60	10	61
P-0039172-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120336534	120461954	Promoter of REG4(-):106bp from tx start	Exon 31 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.5762:NOTCH2_chr1:g.120336534del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH2:REG4}	125420	NA	0	3	6	3
P-0039227-T01-IM6	SOMATIC	RB1	RB1	13	13	48953785	48965935	Exon 14 of RB1(+)	Intron of RB1(+):10Kb after exon 17	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1388_c.1695+10356del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12150	NA	0	82	10	90
P-0039289-T01-IM6	SOMATIC	NDE1	BLM	16	15	15795773	91310060	Intron of NDE1(+):5Kb after exon 9	Intron of BLM(+):79bp before exon 10	GRCh37	TRANSLOCATION	NDE1 (NM_017668) - BLM (NM_000057) rearrangement: t(15;16)(q26.1;p13.11)(chr15:g.91310060::chr16:g.15795773)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NDE1:BLM}	0	NA	0	23	10	23
P-0039362-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32166382	32209589	Intron of NOTCH4(-):43bp after exon 25	IGR: 47Kb before NOTCH4(-)	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.4617+44:NOTCH4_chr6:g.32209589del	PRECISE		MANUAL_OK	3to5	-	43207	NA	0	4	8	4
P-0039564-T01-IM6	SOMATIC	FLCN	FLCN	17	17	17124695	17135499	Intron of FLCN(-):155bp after exon 8	5-UTR of FLCN(-):19Kb before coding start	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.871+156:FLCN_chr17:g.17135499del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	10804	NA	0	7	10	7
P-0039603-T01-IM6	SOMATIC	ARID5B	ARID5B	10	2	63851401	73675078	Exon 10 of ARID5B(+)	Intron of ALMS1(+):11bp before exon 8	GRCh37	TRANSLOCATION	ARID5B (NM_032199) rearrangement: t(2;10)(p13.1;q21.2)(chr2:g.73675078::chr10:g.63851401)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	40	10	40
P-0039603-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148508797	148514006	Exon 16 of EZH2(-)	Intron of EZH2(-):136bp before exon 12	GRCh37	DUPLICATION	EZH2 (NM_004456) rearrangement: c.1411-136_c.1867dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5209	NA	0	29	10	29
P-0039666-T01-IM6	SOMATIC	RAD51C	RAD51C	17	17	56770147	56772290	Exon 1 of RAD51C(+)	Intron of RAD51C(+):1bp before exon 2	GRCh37	DELETION	RAD51C (NM_058216) rearrangement: c.143_c.146-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2143	NA	0	7	10	8
P-0039723-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55240888	55269114	Intron of EGFR(+):71bp after exon 17	Intron of EGFR(+):66bp after exon 25	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+71_c.3114+66dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28226	NA	0	103	10	108
P-0039752-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187539866	187615597	Exon 10 of FAT1(-)	Intron of FAT1(-):12Kb after exon 2	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3265+12120_c.7874del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	75731	NA	0	20	10	21
P-0039935-T01-IM6	SOMATIC	MEF2B	MEF2B	19	19	19253625	19256634	Promoter of MEF2B(-):3Kb from tx start	Exon 9 of MEF2B(-)	GRCh37	DUPLICATION	MEF2B (NM_001145785) rearrangement: c.1079:MEF2B_chr19:g.19253625dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3009	NA	0	5	10	7
P-0039965-T01-IM6	SOMATIC	MGAT4A	INPP4A	2	2	99189366	99244417	Exon 24 of INPP4A(+)	Intron of MGAT4A(-):2Kb before exon 12	GRCh37	INVERSION	MGAT4A (NM_012214) - INPP4A (NM_001134224) rearrangement: c.1469-2119:MGAT4A_c.2622:INPP4Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MGAT4A:INPP4A}	55051	NA	0	38	10	56
P-0040022-T01-IM6	SOMATIC	NF1	NF1	17	2	29664971	4172269	Intron of NF1(+):71bp before exon 45	IGR: 167Kb before LINC01304(-)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(2;17)(p25.3;q11.2)(chr2:g.4172269::chr17:g.29664971)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	10
P-0040084-T01-IM6	SOMATIC	UBE2W	TEK	9	8	27180309	74735893	Exon 7 of TEK(+)	Intron of UBE2W(-):1Kb after exon 3	GRCh37	TRANSLOCATION	UBE2W (NM_001001481) - TEK (NM_000459) rearrangement: t(8;9)(q21.11;p21.2)(chr8:g.74735893::chr9:g.27180309)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {UBE2W:TEK}	0	NA	0	54	10	60
P-0040154-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2100547	2136405	Intron of TSC2(+):60bp after exon 3	Intron of TSC2(+):25bp after exon 37	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.225+60_c.4849+25dup	PRECISE		MANUAL_OK	5to3	Duplication of 34 exons : out of frame	35858	NA	0	2	8	2
P-0040194-T01-IM6	SOMATIC	MALT1	MALT1	18	18	56390481	56391272	Exon 10 of MALT1(+)	Intron of MALT1(+):789bp after exon 10	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1220_c.1222+789del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	791	NA	0	39	0	43
P-0040243-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39960285	42875163	3-UTR of ERG(-):73Kb after coding stop	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4714:TMPRSS2_chr21:g.39960285del	PRECISE		MANUAL_OK	3to5	-	2914878	NA	0	115	10	116
P-0040249-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	170009256	170011381	Intron of PRKCI(+):385bp before exon 13	Intron of PRKCI(+):85bp after exon 14	GRCh37	DUPLICATION	PRKCI (NM_002740) rearrangement: c.1204-386_c.1417+85dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	2125	NA	0	16	10	35
P-0040249-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	38940360	38945097	3-UTR of RICTOR(-):2Kb after coding stop	Exon 35 of RICTOR(-)	GRCh37	DUPLICATION	RICTOR (NM_152756) rearrangement: c.4707:RICTOR_chr5:g.38940360dup	PRECISE		MANUAL_OK	5to3	-	4737	NA	0	46	10	50
P-0040281-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56147050	56161587	Intron of MAP3K1(+):5Kb before exon 2	Intron of MAP3K1(+):68bp before exon 6	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.483-5377_c.1153-69del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	14537	NA	0	7	10	14
P-0040283-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52440339	194528294	Exon 9 of BAP1(-)	IGR: 99Kb before LOC100507391(+)	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.713:BAP1_chr3:g.194528294inv	PRECISE		MANUAL_OK	3to3	-	142087955	NA	0	108	10	108
P-0040335-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870459	42853626	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 6	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.557-1097:TMPRSS2_c.40-52915:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2983167	NA	0	7	10	7
P-0040451-T01-IM6	SOMATIC	MSI1	MSI1	12	12	120784237	120796806	Intron of MSI1(-):112bp before exon 13	Intron of MSI1(-):1bp after exon 7	GRCh37	DUPLICATION	MSI1 (NM_002442) rearrangement: c.451+2_c.860-112dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	12569	NA	0	27	10	27
P-0040461-T01-IM6	SOMATIC	CLIP1	BRAF	12	7	122833264	140488218	Intron of CLIP1(-):1Kb before exon 9	Intron of BRAF(-):834bp before exon 9	GRCh37	TRANSLOCATION	CLIP1 (NM_001247997) - BRAF (NM_004333) fusion: t(7;12)(q34;q24.31)(chr7:g.140488218::chr12:g.122833264)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CLIP1:BRAF}	0	NA	0	9	10	9
P-0040618-T01-IM6	SOMATIC	MALT1	MALT1	18	18	56406042	56414942	Intron of MALT1(+):3Kb before exon 14	Exon 17 of MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1604-3055_c.2343del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8900	NA	0	4	8	4
P-0040618-T01-IM6	SOMATIC	THSD4	EWSR1	22	15	29684202	71660057	Intron of EWSR1(+):392bp before exon 9	Intron of THSD4(+):44Kb before exon 6	GRCh37	TRANSLOCATION	THSD4 (NM_024817) - EWSR1 (NM_013986) rearrangement: t(15;22)(q23;q12.2)(chr15:g.71660057::chr22:g.29684202)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {THSD4:EWSR1}	0	NA	0	13	10	16
P-0040820-T01-IM6	SOMATIC	NOTCH3	BRD4	19	19	15290653	15359850	Intron of NOTCH3(-):229bp after exon 20	Intron of BRD4(-):4Kb before exon 12	GRCh37	DUPLICATION	NOTCH3 (NM_000435) - BRD4 (NM_058243) rearrangement: c.3327+230:NOTCH3_c.2159-4277:BRD4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH3:BRD4}	69197	NA	0	13	10	15
P-0040855-T01-IM6	SOMATIC	BCL2L14	ETV6	12	12	12027991	12237592	Intron of ETV6(+):5Kb after exon 5	Intron of BCL2L14(+):3Kb before exon 3	GRCh37	DUPLICATION	BCL2L14 (NM_138723) - ETV6 (NM_001987) rearrangement: c.434-2555:BCL2L14_c.1009+5088:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BCL2L14:ETV6}	209601	NA	0	34	10	34
P-0040963-T01-IM6	SOMATIC	BRD4	NUTM1	19	15	15366313	34640480	Exon 10 of BRD4(-)	Exon 3 of NUTM1(+)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - NUTM1 (NM_175741) rearrangement: t(15;19)(q14;p13.12)(chr15:g.34640480::chr19:g.15366313)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRD4:NUTM1}	0	NA	1	85	10	96
P-0040980-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89710117	89711907	Intron of PTEN(+):2Kb before exon 6	Exon 6 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.493-1758_c.525del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1790	NA	0	2	5	4
P-0041285-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41244259	41254398	Exon 10 of BRCA1(-)	Intron of BRCA1(-):2Kb after exon 6	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.441+1741_c.3289del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10139	NA	0	21	10	32
P-0041285-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41246455	41251362	Exon 10 of BRCA1(-)	Intron of BRCA1(-):429bp after exon 7	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.547+430_c.1093del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4907	NA	0	11	10	14
P-0041345-T01-IM6	SOMATIC	EP300	GUCD1	22	22	24944624	41574494	Intron of GUCD1(-):260bp after exon 2	Exon 31 of EP300(+)	GRCh37	INVERSION	EP300 (NM_001429) - GUCD1 (NM_031444) rearrangement: c.6779:EP300_c.128+261:GUCD1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EP300:GUCD1}	16629870	NA	0	16	10	16
P-0041572-T01-IM6	SOMATIC	NF1	NF1	17	17	29545411	29553638	Intron of NF1(+):611bp before exon 14	Exon 18 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1528-612_c.2187dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8227	NA	0	11	10	12
P-0041572-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178092822	178095843	Promoter of NFE2L2(-):2Kb from tx start	Exon 5 of NFE2L2(-)	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.1488:NFE2L2_chr2:g.178092822del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3021	NA	0	2	9	3
P-0041659-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39880238	42868572	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+1474:TMPRSS2_c.40-62694:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2988334	NA	0	52	10	54
P-0041675-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980383	210518232	Exon 2 of ELF3(+)	Intron of HHAT(+):16Kb after exon 1	GRCh37	DUPLICATION	ELF3 (NM_004433) rearrangement: c.119:ELF3_chr1:g.210518232dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {HHAT:ELF3}	8537849	NA	0	8	10	8
P-0042153-T01-IM6	SOMATIC	KIF13A	RET	10	6	43610510	17806558	Intron of RET(+):326bp after exon 11	Intron of KIF13A(-):712bp before exon 19	GRCh37	TRANSLOCATION	KIF13A (NM_022113) - RET (NM_020975) fusion: t(6;10)(p22.3;q11.21)(chr6:g.17806558::chr10:g.43610510)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF13A:RET}	0	NA	0	415	10	669
P-0042153-T01-IM6	SOMATIC	BRCA1	BRCA1	17	9	41244909	140583654	Exon 10 of BRCA1(-)	Intron of EHMT1(+):22Kb before exon 2	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(9;17)(q34.3;q21.31)(chr9:g.140583654::chr17:g.41244909)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	6	6	6
P-0042261-T01-IM6	SOMATIC	PPP6C	PPP6C	9	9	127109808	127922948	Intron of NEK6(+):179bp before exon 10	Intron of PPP6C(-):171bp after exon 3	GRCh37	DELETION	PPP6C (NM_002721) rearrangement: c.237+172:PPP6C_chr9:g.127109808del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	813140	NA	0	3	10	3
P-0042813-T01-IM6	SOMATIC	FRMD6	PRKD1	14	14	30093532	52182610	Intron of PRKD1(-):68bp before exon 13	Intron of FRMD6(+):393bp after exon 10	GRCh37	INVERSION	FRMD6 (NM_152330) - PRKD1 (NM_002742) rearrangement: c.1000+393:FRMD6_c.1799-68:PRKD1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FRMD6:PRKD1}	22089078	NA	0	13	10	13
P-0042813-T01-IM6	SOMATIC	TSC2	MAPK8IP3	16	16	1807952	2112073	Intron of MAPK8IP3(+):2Kb before exon 10	Intron of TSC2(+):64bp after exon 12	GRCh37	DUPLICATION	TSC2 (NM_000548) - MAPK8IP3 (NM_015133) rearrangement: c.1257+64:TSC2_c.1214-197:MAPK8IP3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TSC2:MAPK8IP3}	304121	NA	0	10	0	12
P-0042813-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2106841	4845472	Intron of TSC2(+):71bp after exon 8	5-UTR of SMIM22(+):263bp before coding start	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.774+71:TSC2_chr16:g.4845472inv	PRECISE		MANUAL_OK	5to5	-	2738631	NA	0	13	10	13
P-0043229-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187558007	187596387	Exon 5 of FAT1(-)	Intron of FAT1(-):12Kb before exon 3	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3266-11620_c.3704del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	38380	NA	0	8	10	8
P-0043229-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8485891	8596768	Exon 28 of PTPRD(-)	Intron of PTPRD(-):37Kb after exon 14	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.352+36549_c.2926del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	110877	NA	0	4	6	5
P-0043240-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86555625	86564405	IGR: 8Kb before RASA1(+)	Exon 1 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.137:RASA1_chr5:g.86555625del	PRECISE		MANUAL_OK	3to5	-	8780	NA	0	53	10	59
P-0043241-T01-IM6	SOMATIC	ID3	ID3	1	1	23885601	38197642	Intron of ID3(-):16bp after exon 1	Intron of EPHA10(-):388bp before exon 7	GRCh37	INVERSION	ID3 (NM_002167) rearrangement: c.300+17:ID3_chr1:g.38197642inv	PRECISE		MANUAL_OK	3to3	-	14312041	NA	0	39	10	39
P-0043241-T01-IM6	SOMATIC	GNL2	MAPK1	22	1	22143180	38056295	Intron of MAPK1(-):83bp before exon 5	Intron of GNL2(-):11bp after exon 4	GRCh37	TRANSLOCATION	GNL2 (NM_013285) - MAPK1 (NM_002745) rearrangement: t(1;22)(p34.3;q11.21)(chr1:g.38056295::chr22:g.22143180)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GNL2:MAPK1}	0	NA	0	7	0	7
P-0043241-T01-IM6	SOMATIC	CCDC171	PTPRD	9	9	8454641	15584552	Intron of PTPRD(-):5Kb before exon 34	Intron of CCDC171(+):6Kb after exon 4	GRCh37	INVERSION	CCDC171 (NM_173550) - PTPRD (NM_002839) rearrangement: c.352+5531:CCDC171_c.3876-4804:PTPRDinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CCDC171:PTPRD}	7129911	NA	0	5	0	5
P-0043567-T01-IM6	SOMATIC	NCOR1	NCOR1	17	16	16041505	59600624	Exon 13 of NCOR1(-)	IGR: 187Kb before APOOP5(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(16;17)(q21;p11.2)(chr16:g.59600624::chr17:g.16041505)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	6
P-0043581-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39938644	42867191	Intron of ERG(-):9Kb after exon 3	Intron of TMPRSS2(-):686bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-686:TMPRSS2_c.39+8942:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2928547	NA	0	10	10	10
P-0043913-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49435341	49439860	Intron of KMT2D(-):23bp before exon 31	Exon 17 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4681_c.6235-23del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4519	NA	0	121	10	143
P-0044232-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57488269	57493594	Intron of NAB2(+):125bp before exon 7	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-126:NAB2_c.1700:STAT6inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5325	NA	0	54	0	52
P-0045030-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36220090	36221493	Exon 22 of KMT2B(+)	Exon 25 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.4810_c.5252del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1403	NA	0	6	8	6
P-0045030-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	40911054	53084718	Intron of PTPRT(-):74bp after exon 13	IGR: 7Kb before DOK5(+)	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.2176+75:PTPRT_chr20:g.53084718inv	IMPPRECISE		MANUAL_OK	5to5	-	12173664	NA	0	19	0	22
P-0045030-T01-IM6	SOMATIC	CARD11	CARD11	7	3	2959073	106730609	Exon 18 of CARD11(-)	IGR: 98Kb before LINC00882(-)	GRCh37	TRANSLOCATION	CARD11 (NM_032415) rearrangement: t(3;7)(q13.12;p22.2)(chr3:g.106730609::chr7:g.2959073)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	8	9
P-0045031-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206647211	206652448	Intron of IKBKE(+):462bp before exon 4	Exon 10 of IKBKE(+)	GRCh37	DELETION	IKBKE (NM_014002) rearrangement: c.88-463_c.1155del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5237	NA	0	6	10	6
P-0045032-T01-IM6	SOMATIC	AMPH	KMT2C	7	7	38451758	151860755	Intron of AMPH(-):10Kb after exon 16	Exon 43 of KMT2C(-)	GRCh37	DUPLICATION	AMPH (NM_001635) - KMT2C (NM_170606) rearrangement: c.1398+5667:AMPH_c.9907:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AMPH:KMT2C}	113408997	NA	0	6	10	7
P-0045039-T01-IM6	SOMATIC	TMPRSS2	SH3GL3	21	15	42872075	84263952	Intron of TMPRSS2(-):2Kb before exon 2	Intron of SH3GL3(+):6Kb after exon 11	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - SH3GL3 (NM_003027) rearrangement: t(15;21)(q25.2;q22.3)(chr15:g.84263952::chr21:g.42872075)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TMPRSS2:SH3GL3}	0	NA	0	17	10	17
P-0045042-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2052248	2121451	Exon 7 of ZNF598(-)	Intron of TSC2(+):59bp before exon 18	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1840-60:TSC2_chr16:g.2052248del	PRECISE		MANUAL_OK	3to5	-	69203	NA	0	6	5	7
P-0045047-T01-IM6	SOMATIC	SHOC2	SHOC2	10	10	104144408	112745461	Promoter of GBF1(+):139Kb from tx start	Exon 3 of SHOC2(+)	GRCh37	DELETION	SHOC2 (NM_007373) rearrangement: c.779:SHOC2_chr10:g.104144408del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GBF1:SHOC2}	8601053	NA	0	11	10	12
P-0045047-T01-IM6	SOMATIC	SHOC2	SHOC2	10	6	112745448	132792537	Exon 3 of SHOC2(+)	Intron of STX7(-):64bp after exon 5	GRCh37	TRANSLOCATION	SHOC2 (NM_007373) rearrangement: t(6;10)(q23.2;q25.2)(chr6:g.132792537::chr10:g.112745448)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	10	10	10
P-0045047-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	17	7978109	7979641	Intron of ALOX12B(-):803bp after exon 12	Exon 11 of ALOX12B(-)	GRCh37	DUPLICATION	ALOX12B (NM_001139) rearrangement: c.1384_c.1654+804dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1532	NA	0	8	10	8
P-0045050-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55122410	55223447	Intron of EGFR(+):35Kb after exon 1	Intron of EGFR(+):75bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+35352_c.890-76del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	101037	NA	0	312	10	2293
P-0045096-T01-IM6	SOMATIC	GATA1	HDAC6	X	X	48649577	48672540	Exon 2 of GATA1(+)	Intron of HDAC6(+):306bp before exon 11	GRCh37	DELETION	GATA1 (NM_002049) - HDAC6 (NM_006044) rearrangement: c.61:GATA1_c.807-307:HDAC6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GATA1:HDAC6}	22963	NA	0	4	6	4
P-0045100-T01-IM6	SOMATIC	NF1	NF1	17	17	29559386	31255599	Intron of NF1(+):179bp after exon 25	5-UTR of TMEM98(+):3Kb before coding start	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.3314+179:NF1_chr17:g.31255599inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1696213	NA	0	24	10	27
P-0045100-T01-IM6	SOMATIC	CEP112	BRIP1	17	17	59926552	63757280	Exon 5 of BRIP1(-)	Intron of CEP112(-):10Kb before exon 20	GRCh37	DELETION	CEP112 (NM_145036) - BRIP1 (NM_032043) rearrangement: c.2395-10438:CEP112_c.445:BRIP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CEP112:BRIP1}	3830728	NA	0	60	10	70
P-0045101-T01-IM6	SOMATIC	SF3B1	SF3B1	2	2	196075812	198274368	IGR: 446Kb before SLC39A10(+)	Intron of SF3B1(-):125bp after exon 7	GRCh37	INVERSION	SF3B1 (NM_012433) rearrangement: c.904+126:SF3B1_chr2:g.196075812inv	PRECISE		MANUAL_OK	5to5	-	2198556	NA	0	34	10	36
P-0045101-T01-IM6	SOMATIC	FANCC	FANCC	9	9	98011544	98021717	Exon 2 of FANCC(-)	5-UTR of FANCC(-):158Kb before coding start	GRCh37	INVERSION	FANCC (NM_000136) rearrangement: c.30:FANCC_chr9:g.98021717inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	10173	NA	0	11	0	18
P-0045124-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	53706086	56161755	5-UTR of LINC01033(+):5Kb before coding start	Exon 6 of MAP3K1(+)	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.1252:MAP3K1_chr5:g.53706086del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LINC01033:MAP3K1}	2455669	NA	0	6	5	6
P-0013580-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55209663	55222540	Intron of EGFR(+):315bp before exon 2	Intron of EGFR(+):695bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-316_c.889+695del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	12877	NA	0	79	0	360
P-0013580-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55229529	55234104	Intron of EGFR(+):205bp after exon 13	Intron of EGFR(+):974bp after exon 15	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1631+205_c.1880+974del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4575	NA	0	3	0	3
P-0037224-T02-IM6	SOMATIC	CALR	CALR	19	2	13051147	20918446	Exon 5 of CALR(+)	Intron of C2orf43(-):17Kb before exon 6	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(2;19)(p24.1;p13.2)(chr2:g.20918446::chr19:g.13051147)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	22	10	22
P-0044087-T02-IM6	SOMATIC	NTRK1	NTRK1	1	1	156841502	157157970	Exon 7 of NTRK1(+)	IGR: 55Kb before ETV3(-)	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.805:NTRK1_chr1:g.157157970inv	PRECISE		MANUAL_OK	5to5	-	316468	NA	0	4	10	6
P-0044896-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29685203	128658358	Intron of EWSR1(+):428bp after exon 9	Intron of FLI1(+):6Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128658358::chr22:g.29685203)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	104	10	111
P-0044943-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27057763	27198047	Exon 3 of ARID1A(+)	IGR: 8Kb before GPN2(-)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1471:ARID1A_chr1:g.27198047del	PRECISE		MANUAL_OK	3to5	-	140284	NA	0	18	10	20
P-0045019-T02-IM6	SOMATIC	CDKN2B	CDKN2A	9	9	21971098	22006065	Exon 2 of CDKN2A(-)	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) - CDKN2A (NM_058195) rearrangement: c.338:CDKN2B_c.303:CDKN2Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN2B:CDKN2A}	34967	NA	0	39	0	46
P-0045104-T01-IM6	SOMATIC	SETD2	SETD2	12	3	1531949	47098917	Intron of ERC1(+):15Kb after exon 16	Exon 15 of SETD2(-)	GRCh37	TRANSLOCATION	SETD2 (NM_014159) rearrangement: t(3;12)(p21.31;p13.33)(chr3:g.47098917::chr12:g.1531949)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	8
P-0045108-T01-IM6	SOMATIC	PTPRS	MKNK2	19	19	2046309	5215498	Intron of MKNK2(-):27bp before exon 5	Intron of PTPRS(-):10bp after exon 27	GRCh37	DELETION	PTPRS (NM_002850) - MKNK2 (NM_199054) rearrangement: c.4194+11:PTPRS_c.242-27:MKNK2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PTPRS:MKNK2}	3169189	NA	0	20	10	21
P-0045113-T01-IM6	SOMATIC	ERCC2	ERCC2	19	14	45855736	92323026	Intron of ERCC2(-):27bp after exon 21	5-UTR of TC2N(-):74Kb before coding start	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) rearrangement: t(14;19)(q32.12;q13.32)(chr14:g.92323026::chr19:g.45855736)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TC2N:ERCC2}	0	NA	0	10	10	10
P-0045113-T01-IM6	SOMATIC	POLD1	POLD1	19	19	48699459	50902691	Exon 4 of C19orf68(+)	Exon 3 of POLD1(+)	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.266:POLD1_chr19:g.48699459inv	PRECISE		MANUAL_OK	5to5	-	2203232	NA	0	19	10	21
P-0045135-T01-IM6	SOMATIC	SLX4	SLX4	16	12	3632534	57113613	Exon 15 of SLX4(-)	Exon 3 of NACA(-)	GRCh37	TRANSLOCATION	SLX4 (NM_032444) rearrangement: t(12;16)(q13.3;p13.3)(chr12:g.57113613::chr16:g.3632534)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	14	0	14
P-0045139-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36206971	36209184	Promoter of KMT2B(+):2Kb from tx start	Exon 1 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.264:KMT2B_chr19:g.36206971del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2213	NA	0	4	10	4
P-0045141-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140421701	140486821	IGR: 12Kb before BRAF(-)	Intron of BRAF(-):526bp after exon 9	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.1177+527:BRAF_chr7:g.140421701dup	PRECISE		MANUAL_OK	5to3	-	65120	NA	0	14	10	15
P-0045146-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861396	42869703	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):342bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon2 fused with ERG exon2): c.126+343:TMPRSS2_c.18+8891:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3008307	NA	0	223	10	337
P-0045153-T01-IM6	SOMATIC	BABAM1	BABAM1	19	19	8834399	17382461	IGR: 7Kb before OR2Z1(+)	Exon 3 of BABAM1(+)	GRCh37	INVERSION	BABAM1 (NM_001033549) rearrangement: c.341:BABAM1_chr19:g.8834399inv	PRECISE		MANUAL_OK	3to3	-	8548062	NA	0	7	10	8
P-0045153-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162864448	162892195	Exon 2 of PARK2(-)	Intron of PARK2(-):28Kb before exon 2	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.8-27690_c.65del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27747	NA	0	3	10	4
P-0045154-T01-IM6	SOMATIC	RTEL1	SPTLC3	20	20	13023061	62311233	Intron of SPTLC3(+):7Kb before exon 2	Exon 13 of RTEL1(+)	GRCh37	DUPLICATION	RTEL1 (NM_032957) - SPTLC3 (NM_018327) rearrangement: c.1141:RTEL1_c.118-6532:SPTLC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RTEL1:SPTLC3}	49288172	NA	0	5	10	5
P-0045156-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27021996	27023636	Promoter of ARID1A(+):525bp from tx start	Exon 1 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.742:ARID1A_chr1:g.27021996del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1640	NA	0	142	10	159
P-0045158-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39895880	42874522	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4406:TMPRSS2_c.39+51706:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2978642	NA	0	14	10	15
P-0045158-T01-IM6	SOMATIC	SYN3	RAC2	22	22	33001724	37628985	Intron of SYN3(-):9Kb before exon 6	Intron of RAC2(-):27bp before exon 3	GRCh37	DUPLICATION	SYN3 (NM_003490) - RAC2 (NM_002872) rearrangement: c.712-9002:SYN3_c.108-27:RAC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SYN3:RAC2}	4627261	NA	0	3	10	3
P-0045158-T01-IM6	SOMATIC	RICTOR	RICTOR	5	3	39074350	182061807	Intron of RICTOR(-):80bp after exon 1	IGR: 103Kb before FLJ46066(-)	GRCh37	TRANSLOCATION	RICTOR (NM_152756) rearrangement: t(3;5)(q26.33;p13.1)(chr3:g.182061807::chr5:g.39074350)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	9
P-0045159-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	41305457	41306776	Intron of PTPRT(-):1Kb after exon 7	Exon 7 of PTPRT(-)	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.883_c.1153+1049inv	PRECISE		MANUAL_OK	3to3	-	1319	NA	0	13	10	13
P-0045181-T01-IM6	SOMATIC	SHQ1	SHQ1	3	3	72814990	89156692	Intron of SHQ1(-):15Kb before exon 11	5-UTR of EPHA3(+):206bp before coding start	GRCh37	INVERSION	SHQ1 (NM_018130) rearrangement: c.1182-15003:SHQ1_chr3:g.89156692inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {SHQ1:EPHA3}	16341702	NA	0	9	10	9
P-0045182-T01-IM6	SOMATIC	ATR	ATR	3	3	119457467	142211923	Intron of MAATS1(+):634bp before exon 12	Intron of ATR(-):50bp after exon 35	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.6078+51:ATR_chr3:g.119457467inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ATR:MAATS1}	22754456	NA	0	15	10	15
P-0045185-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123240014	123994661	Intron of FGFR2(-):479bp before exon 18	Intron of TACC2(+):2Kb before exon 14	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2302-479:FGFR2_c.8128-2249:TACC2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:TACC2}	754647	NA	0	12	0	19
P-0045188-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18474143	18547106	Intron of PIK3C2G(+):177bp after exon 7	Intron of PIK3C2G(+):3Kb after exon 14	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.1208+177_c.2003+2920del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	72963	NA	0	3	9	3
P-0045188-T01-IM6	SOMATIC	CREBBP	CREBBP	X	16	19329205	3843591	IGR: 33Kb before PDHA1(+)	Exon 4 of CREBBP(-)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(16;X)(p13.3;p22.12)(chr16:g.3843591::chrX:g.19329205)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	9	6
P-0045189-T01-IM6	SOMATIC	AXL	AXL	19	19	41726580	42248893	Exon 2 of AXL(+)	IGR: 11Kb before CEACAM6(+)	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.125:AXL_chr19:g.42248893del	PRECISE		MANUAL_OK	3to5	-	522313	NA	0	25	10	26
P-0045189-T01-IM6	SOMATIC	MSH6	MSH6	2	2	48016084	48023162	Intron of MSH6(+):2Kb before exon 2	Exon 3 of MSH6(+)	GRCh37	DUPLICATION	MSH6 (NM_000179) rearrangement: c.261-1982_c.587dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7078	NA	0	10	10	10
P-0045190-T01-IM6	SOMATIC	FLCN	FLCN	17	17	17116943	17120412	3-UTR of FLCN(-):25bp after coding stop	Exon 10 of FLCN(-)	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.1147:FLCN_chr17:g.17116943del	PRECISE		MANUAL_OK	3to5	-	3469	NA	0	81	10	83
P-0045208-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097408	178103784	Intron of NFE2L2(-):97bp before exon 4	Intron of NFE2L2(-):5Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-4785_c.403-97del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	6376	NA	0	25	10	25
P-0045245-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140473385	140485591	Intron of BRAF(-):3Kb after exon 13	Intron of BRAF(-):2Kb after exon 9	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1177+1757_c.1694+3327del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	12206	NA	0	26	10	27
P-0045250-T01-IM6	SOMATIC	SOS1	SOS1	2	2	39278468	131846662	Intron of SOS1(-):40bp before exon 6	5-UTR of FAM168B(-):36Kb before coding start	GRCh37	INVERSION	SOS1 (NM_005633) rearrangement: c.721-40:SOS1_chr2:g.131846662inv	PRECISE		MANUAL_OK	3to3	-	92568194	NA	0	6	10	8
P-0045252-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180049277	180052868	Intron of FLT4(-):373bp before exon 13	Exon 10 of FLT4(-)	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.1421+1_c.1658-373del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3591	NA	0	20	10	20
P-0045256-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46298250	46304714	Intron of ARID2(+):466bp before exon 21	Promoter of ARID2(+):181Kb from tx start	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.5364-467:ARID2_chr12:g.46304714del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	6464	NA	0	5	0	5
P-0045275-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12015066	12044511	Intron of MAP2K4(+):1Kb after exon 6	Exon 11 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.685+1323_c.1134del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29445	NA	0	7	0	8
P-0045280-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114919874	116507504	Intron of TCF7L2(+):503bp before exon 13	IGR: 17Kb before LOC101927692(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.1319-504:TCF7L2_chr10:g.116507504del	PRECISE		MANUAL_OK	3to5	-	1587630	NA	0	18	10	21
P-0027956-T03-IM6	SOMATIC	JAK3	JAK3	19	19	17954876	17959020	Intron of JAK3(-):166bp after exon 2	Promoter of JAK3(-):23Kb from tx start	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.184+167:JAK3_chr19:g.17959020inv	PRECISE		MANUAL_OK	3to3	-	4144	NA	0	6	10	6
P-0030893-T03-IM6	SOMATIC	BRCA1	BRCA1	17	12	41244044	1952789	Exon 10 of BRCA1(-)	Intron of CACNA2D4(-):778bp after exon 25	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(12;17)(p13.33;q21.31)(chr12:g.1952789::chr17:g.41244044)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	13	10	13
P-0043844-T03-IM6	SOMATIC	BRD4	BRD4	19	19	15361268	15378297	Intron of BRD4(-):4Kb after exon 11	Exon 4 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.489_c.2158+3695del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17029	NA	0	4	6	4
P-0043844-T03-IM6	SOMATIC	NSD1	NSD1	5	5	176709879	176721364	Intron of NSD1(+):297bp after exon 19	Exon 23 of NSD1(+)	GRCh37	INVERSION	NSD1 (NM_022455) rearrangement: c.6009+297_c.6995inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11485	NA	0	21	10	20
P-0045225-T01-IM6	SOMATIC	MUM1	STK11	19	19	1218429	1374553	Exon 2 of STK11(+)	Intron of MUM1(+):1Kb after exon 13	GRCh37	DUPLICATION	MUM1 (NM_032853) - STK11 (NM_000455) rearrangement: c.2078+1394:MUM1_c.304:STK11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MUM1:STK11}	156124	NA	0	18	10	18
P-0045225-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	145061684	145738095	Promoter of GRINA(+):3Kb from tx start	Exon 17 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.2815:RECQL4_chr8:g.145061684inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RECQL4:GRINA}	676411	NA	0	15	10	20
P-0045243-T01-IM6	SOMATIC	EML4	ALK	2	2	29448298	42504926	Intron of ALK(-):28bp after exon 19	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3064:EML4_c.3172+29:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13056628	NA	0	31	10	40
P-0044066-T01-IM6	SOMATIC	RAD52	RAD52	12	3	1022740	63578870	Intron of RAD52(-):122bp before exon 12	Intron of SYNPR(+):16Kb before exon 5	GRCh37	TRANSLOCATION	RAD52 (NM_134424) rearrangement: t(3;12)(p14.2;p13.33)(chr3:g.63578870::chr12:g.1022740)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0044365-T01-IM6	SOMATIC	CDK4	CDK4	12	12	25188035	58143057	IGR: 17Kb before LRMP(+)	Exon 7 of CDK4(-)	GRCh37	INVERSION	CDK4 (NM_000075) rearrangement: c.727:CDK4_chr12:g.25188035inv	PRECISE		MANUAL_OK	5to5	-	32955022	NA	0	66	10	83
P-0044365-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36215627	41160688	Exon 9 of KMT2B(+)	IGR: 11Kb before NUMBL(-)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.3424:KMT2B_chr19:g.41160688del	PRECISE		MANUAL_OK	3to5	-	4945061	NA	0	30	10	32
P-0044410-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57865421	133185440	Exon 12 of GLI1(+)	5-UTR of LRCOL1(-):5Kb before coding start	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: c.2898:GLI1_chr12:g.133185440del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	75320019	NA	0	57	10	58
P-0045111-T01-IM6	SOMATIC	TRIM24	BRAF	7	7	138263189	140488049	Intron of TRIM24(+):759bp before exon 15	Intron of BRAF(-):665bp before exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.2257-760:TRIM24_c.1141-665:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2224860	NA	0	24	10	24
P-0045313-T01-IM6	SOMATIC	RAD52	RAD52	18	12	62012153	1025842	5-UTR of LOC284294(+):79Kb before coding start	Exon 8 of RAD52(-)	GRCh37	TRANSLOCATION	RAD52 (NM_134424) rearrangement: t(12;18)(p13.33;q22.1)(chr12:g.1025842::chr18:g.62012153)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	131	10	134
P-0045316-T01-IM6	SOMATIC	KCTD5	TSC2	16	16	2114114	2737382	Intron of TSC2(+):158bp before exon 15	Intron of KCTD5(+):5Kb after exon 1	GRCh37	DUPLICATION	KCTD5 (NM_018992) - TSC2 (NM_000548) rearrangement: c.252+4581:KCTD5_c.1444-159:TSC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KCTD5:TSC2}	623268	NA	0	5	7	5
P-0045316-T01-IM6	SOMATIC	ARID1A	ARID1A	8	1	37507937	27058249	IGR: 45Kb before ZNF703(+)	Intron of ARID1A(+):154bp after exon 3	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;8)(p36.11;p11.23)(chr1:g.27058249::chr8:g.37507937)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	21	10	20
P-0045318-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2979444	2987527	Exon 6 of CARD11(-)	Intron of CARD11(-):106bp before exon 3	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.8-106_c.803del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8083	NA	0	4	6	4
P-0045341-T01-IM6	SOMATIC	EML4	ALK	2	2	29447920	42503556	Intron of ALK(-):406bp after exon 19	Intron of EML4(+):4Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4434:EML4_c.3172+407:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13055636	NA	0	102	10	101
P-0045344-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162581492	162683465	Intron of PARK2(-):41Kb after exon 4	Intron of PARK2(-):91bp after exon 3	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.412+92_c.534+40671del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	101973	NA	0	10	10	10
P-0045213-T01-IM6	SOMATIC	TP53	TP53	17	6	7579873	116160774	Exon 2 of TP53(-)	IGR: 102Kb before FRK(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(6;17)(q22.1;p13.1)(chr6:g.116160774::chr17:g.7579873)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	42
P-0045221-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162683797	162757728	Exon 3 of PARK2(-)	Intron of PARK2(-):74Kb before exon 3	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.172-73931_c.172del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	73931	NA	0	27	10	27
P-0040451-T02-IM6	SOMATIC	MSI1	MSI1	12	12	120784237	120796806	Intron of MSI1(-):112bp before exon 13	Intron of MSI1(-):1bp after exon 7	GRCh37	DUPLICATION	MSI1 (NM_002442) rearrangement: c.451+2_c.860-112dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	12569	NA	0	32	10	32
P-0041879-T04-IM6	SOMATIC	CCND1	CCND1	11	9	69465665	21814425	Intron of CCND1(+):220bp before exon 5	Intron of MTAP(+):1Kb before exon 2	GRCh37	TRANSLOCATION	CCND1 (NM_053056) rearrangement: t(9;11)(p21.3;q13.3)(chr9:g.21814425::chr11:g.69465665)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	12
P-0045185-T02-IM6	SOMATIC	CASP8	CASP8	2	2	202150039	202151181	Exon 8 of CASP8(+)	Exon 9 of CASP8(+)	GRCh37	DELETION	CASP8 (NM_001080125) rearrangement: c.1480_c.1482-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1142	NA	0	6	5	6
P-0045256-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46298208	46304714	Intron of ARID2(+):508bp before exon 21	Promoter of ARID2(+):181Kb from tx start	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.5364-509:ARID2_chr12:g.46304714del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	6506	NA	0	5	0	5
P-0045286-T01-IM6	SOMATIC	ERBB3	ERBB3	12	1	56486803	51595284	Exon 11 of ERBB3(+)	Intron of C1orf185(+):11Kb after exon 3	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(1;12)(p32.3;q13.2)(chr1:g.51595284::chr12:g.56486803)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	13	10	13
P-0045286-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39830795	42868422	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1624:TMPRSS2_c.19-13251:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3037627	NA	0	68	10	71
P-0045288-T01-IM6	SOMATIC	HIST1H1C	HIST1H1C	6	6	26056535	26121429	Exon 1 of HIST1H1C(-)	Promoter of HIST1H2AC(+):3Kb from tx start	GRCh37	DELETION	HIST1H1C (NM_005319) rearrangement: c.122:HIST1H1C_chr6:g.26121429del	PRECISE		MANUAL_OK	3to5	-	64894	NA	0	11	10	11
P-0045291-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861989	42875700	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4177:TMPRSS2_c.18+8298:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013711	NA	0	63	10	65
P-0021747-T03-IM6	SOMATIC	INPPL1	INPPL1	11	11	71945397	71946257	Exon 20 of INPPL1(+)	Intron of INPPL1(+):10bp after exon 22	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.2285_c.2503+10inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	860	NA	0	28	10	29
P-0021747-T03-IM6	SOMATIC	RPTOR	RPTOR	17	17	78866614	78868025	Exon 19 of RPTOR(+)	Intron of RPTOR(+):360bp after exon 20	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.2187_c.2401+360del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1411	NA	0	7	10	7
P-0023994-T06-IM6	SOMATIC	LMNA	NTRK1	1	1	156107917	156844525	Intron of LMNA(+):361bp before exon 10	Intron of NTRK1(+):107bp after exon 10	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion: c.1699-362:LMNA_c.1251+107:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LMNA:NTRK1}	736608	NA	0	20	10	20
P-0041888-T01-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64134577	64137008	Intron of RPS6KA4(+):1Kb before exon 10	Exon 13 of RPS6KA4(+)	GRCh37	INVERSION	RPS6KA4 (NM_003942) rearrangement: c.1072-1027_c.1519inv	IMPPRECISE		MANUAL_OK	5to5	-	2431	NA	0	15	0	31
P-0041888-T01-IM6	SOMATIC	NF1	NF1	17	17	7582809	29687541	5-UTR of TP53(-):10Kb before coding start	Exon 57 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.8197:NF1_chr17:g.7582809inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TP53:NF1}	22104732	NA	0	61	10	81
P-0043641-T01-IM6	SOMATIC	ICOSLG	KCNJ6	21	21	38998516	45656843	Intron of KCNJ6(-):730bp before exon 4	Exon 3 of ICOSLG(-)	GRCh37	DELETION	ICOSLG (NM_015259) - KCNJ6 (NM_002240) rearrangement: c.313:ICOSLG_c.947-730:KCNJ6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ICOSLG:KCNJ6}	6658327	NA	0	9	10	15
P-0045434-T01-IM6	SOMATIC	NTHL1	TSC2	16	16	2090099	2132119	Intron of NTHL1(-):34bp after exon 5	Intron of TSC2(+):317bp before exon 32	GRCh37	DELETION	NTHL1 (NM_002528) - TSC2 (NM_000548) rearrangement: c.815+35:NTHL1_c.3815-318:TSC2del	PRECISE		MANUAL_OK	3to5	-	42020	NA	0	41	10	41
P-0044245-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871301	42874614	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4498:TMPRSS2_c.40-53757:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3003313	NA	0	83	10	86
P-0045300-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37578006	38061117	Intron of SLC25A21(-):63Kb after exon 1	Exon 2 of FOXA1(-)	GRCh37	DUPLICATION	SLC25A21 (NM_030631) - FOXA1 (NM_004496) rearrangement: c.70+63480:SLC25A21_c.872:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC25A21:FOXA1}	483111	NA	0	14	10	14
P-0045300-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117866350	117874662	Intron of RAD21(-):133bp after exon 9	Intron of RAD21(-):483bp before exon 4	GRCh37	DUPLICATION	RAD21 (NM_006265) rearrangement: c.275-483_c.1161+134dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	8312	NA	0	8	6	8
P-0045300-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141554363	141618737	Exon 14 of AGO2(-)	Intron of AGO2(-):23Kb before exon 2	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.23-23327_c.1788del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	64374	NA	0	9	10	9
P-0045304-T01-IM6	SOMATIC	STK11	MIDN	19	19	1223023	1256987	Exon 8 of STK11(+)	Intron of MIDN(+):6bp before exon 8	GRCh37	DELETION	STK11 (NM_000455) - MIDN (NM_177401) rearrangement: c.960:STK11_c.1130-7:MIDNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STK11:MIDN}	33964	NA	0	8	10	9
P-0045305-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156849017	174941717	Exon 15 of NTRK1(+)	Intron of RABGAP1L(+):3Kb after exon 4	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1909:NTRK1_chr1:g.174941717inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	18092700	NA	0	92	10	91
P-0045408-T01-IM6	SOMATIC	FGFR2	FGFR2	10	7	123240135	88585840	Intron of FGFR2(-):600bp before exon 18	Intron of ZNF804B(+):196Kb after exon 1	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(7;10)(q21.13;q26.13)(chr7:g.88585840::chr10:g.123240135)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	59	10	58
P-0033073-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971047	28565244	Exon 2 of CDKN2A(-)	5-UTR of LINGO2(-):616Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.354:CDKN2A_chr9:g.28565244del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LINGO2:CDKN2A}	6594197	NA	0	51	10	81
P-0042711-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876629	42870659	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):543bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-543:TMPRSS2_c.40-59085:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994030	NA	0	70	10	72
P-0044431-T01-IM6	SOMATIC	IGF2	IGF2	11	11	1917224	2154706	Promoter of LINC01150(+):764bp from tx start	Intron of IGF2(-):40bp after exon 4	GRCh37	INVERSION	IGF2 (NM_001127598) rearrangement: c.474+41:IGF2_chr11:g.1917224inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {IGF2:LINC01150}	237482	NA	0	4	6	4
P-0045363-T01-IM6	SOMATIC	TPM1	ALK	15	2	63358833	29446514	Intron of TPM1(+):4Kb after exon 8	Intron of ALK(-):120bp before exon 20	GRCh37	TRANSLOCATION	TPM1 (NM_001018020) - ALK (NM_004304) fusion: t(2;15)(p23.2;q22.2)(chr2:g.29446514::chr15:g.63358833)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TPM1:ALK}	0	NA	0	159	10	159
P-0045382-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741328	1808903	Intron of TACC3(+):100bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2335:FGFR3_c.1942-101:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67575	NA	0	77	10	78
P-0045399-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8733728	10203900	Intron of PTPRD(-):51bp after exon 12	5-UTR of PTPRD(-):2Mb before coding start	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.64+52:PTPRD_chr9:g.10203900inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1470172	NA	0	10	10	10
P-0045400-T01-IM6	SOMATIC	TAP2	TAP2	6	6	32797539	32798584	Intron of TAP2(-):167bp after exon 10	Intron of TAP2(-):1bp before exon 8	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: c.1273-1_c.1795+168inv	IMPPRECISE		MANUAL_OK	3to3	-	1045	NA	0	152	0	151
P-0045406-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55170299	55222759	Intron of EGFR(+):40Kb before exon 2	Intron of EGFR(+):763bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-39680_c.890-764del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	52460	NA	0	268	10	294
P-0045406-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268167	55270600	Intron of EGFR(+):61bp after exon 24	Intron of EGFR(+):282bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+61_c.3271+282del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2433	NA	0	25	10	33
P-0045410-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241330	55269368	Intron of EGFR(+):283bp before exon 18	Intron of EGFR(+):59bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-284_c.3115-60dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28038	NA	0	77	10	84
P-0045410-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268963	55275348	Exon 25 of EGFR(+)	Promoter of EGFR(+):189Kb from tx start	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3029:EGFR_chr7:g.55275348del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6385	NA	0	24	10	25
P-0045411-T01-IM6	SOMATIC	KIT	KIT	4	4	55564676	55565965	Exon 3 of KIT(+)	Intron of KIT(+):33bp after exon 4	GRCh37	DELETION	KIT (NM_000222) rearrangement: c.564_c.756+33del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1289	NA	0	2	3	2
P-0045412-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39987066	42876602	3-UTR of ERG(-):47Kb after coding stop	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+3275:TMPRSS2_chr21:g.39987066del	PRECISE		MANUAL_OK	3to5	-	2889536	NA	0	60	10	164
P-0045414-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52620344	52627541	Intron of PBRM1(-):96bp after exon 21	Intron of PBRM1(-):4Kb before exon 19	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.2780-4270_c.3312+97dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	7197	NA	0	17	0	17
P-0045416-T01-IM6	SOMATIC	EP300	EP300	22	22	41564848	42369335	Exon 25 of EP300(+)	IGR: 4Kb before SEPT3(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.4149:EP300_chr22:g.42369335inv	PRECISE		MANUAL_OK	5to5	-	804487	NA	0	21	10	26
P-0045466-T01-IM6	SOMATIC	RET	RET	10	10	43610244	51588788	Intron of RET(+):60bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7	GRCh37	DUPLICATION	RET (NM_020975) rearrangement: c.2136+60:RET_chr10:g.51588788dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7978544	NA	0	48	10	49
P-0045466-T01-IM6	SOMATIC	IRS2	IRS2	13	13	110408651	113369567	Exon 2 of IRS2(-)	Intron of ATP11A(+):25Kb after exon 1	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.4017:IRS2_chr13:g.113369567del	PRECISE		MANUAL_OK	3to5	-	2960916	NA	0	16	10	15
P-0045468-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	22755561	62303851	IGR: 187Kb before LINC01384(-)	Intron of RTEL1(+):57bp before exon 9	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.772-58:RTEL1_chr20:g.22755561inv	PRECISE		MANUAL_OK	5to5	-	39548290	NA	0	31	10	37
P-0045469-T01-IM6	SOMATIC	MET	MET	7	7	116404701	116413211	Intron of MET(+):1Kb after exon 11	Intron of MET(+):1Kb after exon 14	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2583+1379_c.3028+1168del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	8510	NA	0	47	10	48
P-0021679-T02-IM6	SOMATIC	TET1	TET1	10	10	70406065	70407777	Exon 4 of TET1(+)	Intron of TET1(+):1Kb after exon 4	GRCh37	INVERSION	TET1 (NM_030625) rearrangement: c.3579_c.4276+1015inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1712	NA	0	102	10	101
P-0045323-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29684977	39767063	Intron of EWSR1(+):202bp after exon 9	Intron of ERG(-):3Kb before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39767063::chr22:g.29684977)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EWSR1:ERG}	0	NA	1	152	10	157
P-0045462-T01-IM6	SOMATIC	FOXP1	FOXP1	7	3	68292852	71027118	IGR: 768Kb before LOC100507468(-)	Exon 11 of FOXP1(-)	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) rearrangement: t(3;7)(p13;q11.22)(chr3:g.71027118::chr7:g.68292852)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	18
P-0045496-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	149498314	149503255	Exon 21 of PDGFRB(-)	Intron of PDGFRB(-):491bp before exon 15	GRCh37	INVERSION	PDGFRB (NM_002609) rearrangement: c.2024-491_c.2900inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4941	NA	0	21	10	24
P-0045497-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31379498	57129205	Exon 8 of DNMT3B(+)	5-UTR of APCDD1L-AS1(+):66Kb before coding start	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.905:DNMT3B_chr20:g.57129205inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	25749707	NA	0	55	0	55
P-0045507-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741016	1808733	Intron of TACC3(+):412bp before exon 11	Intron of FGFR3(+):72bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+72:FGFR3_c.1942-413:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67717	NA	0	244	10	271
P-0045509-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55198403	55223109	Intron of EGFR(+):12Kb before exon 2	Intron of EGFR(+):413bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-11576_c.890-414del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	24706	NA	0	682	0	872
P-0045517-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40467850	42887976	Intron of STAT3(-):32bp before exon 24	5-UTR of GJC1(-):6Kb before coding start	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.2258-32:STAT3_chr17:g.42887976inv	PRECISE		MANUAL_OK	3to3	-	2420126	NA	0	47	10	46
P-0045517-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143003362	143136153	Intron of INPP4B(-):24bp before exon 25	Intron of INPP4B(-):6Kb before exon 13	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.837-5974_c.2488-24del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : out of frame	132791	NA	0	13	10	13
P-0045531-T01-IM6	SOMATIC	LGR5	NAB2	12	12	57488458	71910494	Exon 7 of NAB2(+)	Intron of LGR5(+):8Kb before exon 3	GRCh37	DUPLICATION	LGR5 (NM_003667) - NAB2 (NM_005967) rearrangement: c.285-7692:LGR5_c.1532:NAB2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LGR5:NAB2}	14422036	NA	0	35	10	35
P-0045532-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55156100	55222189	Intron of EGFR(+):54Kb before exon 2	Intron of EGFR(+):344bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-53879_c.889+344del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	66089	NA	0	88	0	558
P-0045532-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268379	55322439	Intron of EGFR(+):273bp after exon 24	3-UTR of ELDR(-):889bp after coding stop	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+273:EGFR_chr7:g.55322439del	PRECISE		MANUAL_OK	3to5	-	54060	NA	0	151	10	167
P-0045535-T01-IM6	SOMATIC	PAX8	PPARG	3	2	12399709	113992616	Intron of PPARG(+):7Kb after exon 1	Intron of PAX8(-):354bp after exon 9	GRCh37	TRANSLOCATION	PAX8 (NM_003466) - PPARG (NM_015869) rearrangement: t(2;3)(q13;p25.2)(chr2:g.113992616::chr3:g.12399709)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PAX8:PPARG}	0	NA	0	80	10	87
P-0045191-T01-IM6	SOMATIC	CIC	CIC	19	19	42796394	42798426	Intron of CIC(+):35bp after exon 12	Exon 18 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.3008+35_c.4297del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2032	NA	1	2	10	1
P-0045224-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974777	36781788	Exon 1 of CDKN2A(-)	IGR: 42Kb before MIR4475(-)	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-3570:CDKN2A_chr9:g.36781788inv	PRECISE		MANUAL_OK	3to3	-	14807011	NA	0	6	10	6
P-0045550-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27106058	27387351	Exon 20 of ARID1A(+)	IGR: 38Kb before SLC9A1(-)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.5669:ARID1A_chr1:g.27387351del	PRECISE		MANUAL_OK	3to5	-	281293	NA	0	23	10	23
P-0045550-T01-IM6	SOMATIC	ROS1	ROS1	6	6	109069953	117650361	Promoter of LINC00222(+):3Kb from tx start	Intron of ROS1(-):130bp after exon 32	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5366+131:ROS1_chr6:g.109069953inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC00222:ROS1}	8580408	NA	0	98	10	98
P-0045556-T01-IM6	SOMATIC	CSF3R	CSMD2	1	1	34166480	36937061	Intron of CSMD2(-):207bp before exon 23	Exon 10 of CSF3R(-)	GRCh37	DELETION	CSF3R (NM_000760) - CSMD2 (NM_052896) rearrangement: c.1258:CSF3R_c.3457-207:CSMD2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CSF3R:CSMD2}	2770581	NA	0	55	10	56
P-0045557-T01-IM6	SOMATIC	ALK	ALK	4	2	90210936	29447286	5-UTR of GPRIN3(-):42Kb before coding start	Intron of ALK(-):892bp before exon 20	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(2;4)(p23.2;q22.1)(chr2:g.29447286::chr4:g.90210936)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {GPRIN3:ALK}	0	NA	0	94	10	95
P-0045578-T01-IM6	SOMATIC	INPPL1	FOLR2	11	11	71931723	71939641	Intron of FOLR2(+):190bp before exon 3	Intron of INPPL1(+):99bp after exon 3	GRCh37	DUPLICATION	INPPL1 (NM_001567) - FOLR2 (NM_001113536) rearrangement: c.397+99:INPPL1_c.151-191:FOLR2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {INPPL1:FOLR2}	7918	NA	0	7	9	6
P-0045578-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37619256	71208276	Exon 1 of CDK12(+)	Intron of FAM104A(-):2Kb before exon 3	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.932:CDK12_chr17:g.71208276del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	33589020	NA	0	83	10	121
P-0045583-T01-IM6	SOMATIC	PMAIP1	PMAIP1	18	18	57567466	60612888	Exon 1 of PMAIP1(+)	Intron of PHLPP1(+):384bp after exon 12	GRCh37	INVERSION	PMAIP1 (NM_021127) rearrangement: c.57:PMAIP1_chr18:g.60612888inv	PRECISE		MANUAL_OK	5to5	-	3045422	NA	0	2	5	2
P-0045583-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55201037	55222013	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):168bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-8942_c.889+168inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	20976	NA	0	4	0	4
P-0045590-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487780	57493179	Intron of NAB2(+):399bp after exon 6	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+399:NAB2_c.1789:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5399	NA	0	111	10	109
P-0044922-T02-IM6	SOMATIC	AMER1	AMER1	X	X	63390875	63412681	IGR: 14Kb before AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.486:AMER1_chrX:g.63390875del	PRECISE		MANUAL_OK	3to5	-	21806	NA	0	12	10	14
P-0045566-T01-IM6	SOMATIC	ZFPM2	ALK	8	2	106384092	29447902	Intron of ZFPM2(+):47Kb before exon 2	Intron of ALK(-):424bp after exon 19	GRCh37	TRANSLOCATION	ZFPM2 (NM_012082) - ALK (NM_004304) fusion: t(2;8)(p23.2;q23.1)(chr2:g.29447902::chr8:g.106384092)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ZFPM2:ALK}	0	NA	0	29	10	29
P-0045611-T01-IM6	SOMATIC	TERT	TERT	15	5	48799126	1295304	Intron of FBN1(-):2Kb after exon 15	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;15)(p15.32;q21.1)(chr5:g.1295304::chr15:g.48799126)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	95	10	95
P-0045612-T01-IM6	SOMATIC	NTRK2	DST	9	6	87482277	56521128	Exon 16 of NTRK2(+)	Intron of DST(-):5Kb before exon 8	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) - DST (NM_001144770) fusion: t(6;9)(p12.1;q21.33)(chr6:g.56521128::chr9:g.87482277)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DST:NTRK2}	0	NA	0	39	10	46
P-0045613-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140429365	140481507	IGR: 4Kb before BRAF(-)	Intron of BRAF(-):14bp before exon 11	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.1315-14:BRAF_chr7:g.140429365dup	PRECISE		MANUAL_OK	5to3	-	52142	NA	0	3	5	4
P-0045616-T01-IM6	SOMATIC	CDKN2B	SLC24A2	9	9	19673619	22008840	Intron of SLC24A2(-):51Kb before exon 2	Exon 1 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) - SLC24A2 (NM_020344) rearrangement: c.113:CDKN2B_c.931-51322:SLC24A2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN2B:SLC24A2}	2335221	NA	0	22	10	25
P-0045617-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	63091106	72163954	Intron of DOCK7(-):34bp before exon 12	Intron of NEGR1(-):132bp before exon 4	GRCh37	INVERSION	NEGR1 (NM_173808) rearrangement: c.536-132:NEGR1_chr1:g.63091106inv	PRECISE		MANUAL_OK	3to3	-	9072848	NA	0	54	10	54
P-0045617-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	96486979	120458815	5-UTR of LOC102723661(+):1Kb before coding start	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.6530:NOTCH2_chr1:g.96486979inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LOC102723661:NOTCH2}	23971836	NA	0	29	10	29
P-0045617-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118352748	133388889	Exon 7 of KMT2A(+)	Intron of OPCML(-):13Kb after exon 1	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.3953:KMT2A_chr11:g.133388889inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2A:OPCML}	15036141	NA	0	20	10	20
P-0045619-T01-IM6	SOMATIC	TP53	TP53	17	2	7576703	86353784	Intron of TP53(-):149bp after exon 9	Intron of PTCD3(+):499bp before exon 13	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(2;17)(p11.2;p13.1)(chr2:g.86353784::chr17:g.7576703)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	21	10	21
P-0045623-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148423587	148507393	5-UTR of CUL1(+):4Kb before coding start	Intron of EZH2(-):31bp after exon 17	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.2029+32:EZH2_chr7:g.148423587del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	83806	NA	0	4	5	4
P-0045718-T01-IM6	SOMATIC	SRC	SRC	20	1	36014517	218901995	Exon 5 of SRC(+)	IGR: 286Kb before TGFB2-OT1(+)	GRCh37	TRANSLOCATION	SRC (NM_198291) rearrangement: t(1;20)(q41;q11.23)(chr1:g.218901995::chr20:g.36014517)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	45	10	46
P-0045728-T01-IM6	SOMATIC	NF1	NF1	17	17	25695654	29657241	IGR: 49Kb before TBC1D3P5(+)	Intron of NF1(+):72bp before exon 39	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.5610-73:NF1_chr17:g.25695654inv	IMPPRECISE		MANUAL_OK	5to5	-	3961587	NA	0	6	0	6
P-0045740-T01-IM6	SOMATIC	TP53	UNC13D	17	17	7576800	73833059	Intron of TP53(-):52bp after exon 9	Intron of UNC13D(-):60bp before exon 13	GRCh37	DUPLICATION	TP53 (NM_000546) - UNC13D (NM_199242) rearrangement: c.993+53:TP53_c.1056-60:UNC13Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TP53:UNC13D}	66256259	NA	0	5	10	6
P-0009538-T02-IM6	SOMATIC	BRAF	BRAF	7	7	140492496	140538879	Intron of BRAF(-):2Kb after exon 8	Intron of BRAF(-):4Kb before exon 3	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.241-4207_c.1140+1612del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	46383	NA	0	5	9	7
P-0020970-T02-IM6	SOMATIC	RFWD2	RFWD2	1	1	176104194	176132920	Exon 8 of RFWD2(-)	Intron of RFWD2(-):30bp after exon 4	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.642+31_c.920del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28726	NA	0	30	10	31
P-0045633-T01-IM6	SOMATIC	TP53	TP53	17	17	7573968	7575782	Exon 10 of TP53(-)	Intron of TP53(-):1Kb after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+1071_c.1059del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1814	NA	0	32	10	33
P-0045643-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99397241	99434720	Intron of IGF1R(+):37Kb before exon 3	Exon 3 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.641-37313_c.807dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	37479	NA	0	7	8	7
P-0045669-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29682834	29683746	Intron of EWSR1(+):77bp before exon 8	Intron of EWSR1(+):623bp after exon 8	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.600-78_c.811+623inv	PRECISE		MANUAL_OK	5to5	-	912	NA	0	2	9	2
P-0045670-T01-IM6	SOMATIC	RB1	RB1	13	13	49038106	49039264	Intron of RB1(+):135bp after exon 21	Intron of RB1(+):17bp after exon 22	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2211+135_c.2325+17del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1158	NA	0	3	0	3
P-0045771-T01-IM6	SOMATIC	MPND	MAP2K2	19	19	4101316	4348694	Intron of MAP2K2(-):38bp before exon 5	Intron of MPND(+):3Kb after exon 3	GRCh37	INVERSION	MPND (NM_032868) - MAP2K2 (NM_030662) rearrangement: c.531+2716:MPND_c.529-38:MAP2K2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MPND:MAP2K2}	247378	NA	0	59	10	58
P-0045773-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315109	43611933	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):98bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2247:KIF5B_c.2137-99:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296824	NA	0	20	10	23
P-0045821-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981446	201992796	Intron of ELF3(+):25bp before exon 4	IGR: 13Kb before ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.386-26:ELF3_chr1:g.201992796del	PRECISE		MANUAL_OK	3to5	-	11350	NA	0	17	10	18
P-0045822-T01-IM6	SOMATIC	HSPG2	WHSC1L1	8	1	38205575	22152479	Exon 2 of WHSC1L1(-)	Intron of HSPG2(-):1Kb before exon 92	GRCh37	TRANSLOCATION	HSPG2 (NM_005529) - WHSC1L1 (NM_023034) rearrangement: t(1;8)(p36.12;p11.23)(chr1:g.22152479::chr8:g.38205575)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HSPG2:WHSC1L1}	0	NA	0	7	0	7
P-0045828-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27084709	27101575	Intron of ARID1A(+):3Kb before exon 5	Exon 18 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.1921-2638_c.4857inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	16866	NA	0	10	10	7
P-0045830-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737256	1808921	Intron of TACC3(+):201bp before exon 8	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2353:FGFR3_c.1645-202:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	71665	NA	0	17	10	17
P-0045832-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12016943	97487697	Intron of ETV6(+):5Kb before exon 5	IGR: 186Kb before NEDD1(+)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.464-5415:ETV6_chr12:g.97487697inv	PRECISE		MANUAL_OK	5to5	-	85470754	NA	0	73	10	81
P-0045832-T01-IM6	SOMATIC	MDM2	GNPTAB	12	12	69218490	102205419	Intron of MDM2(+):59bp after exon 7	Intron of GNPTAB(-):15Kb before exon 2	GRCh37	INVERSION	MDM2 (NM_002392) - GNPTAB (NM_024312) rearrangement: c.523+59:MDM2_c.118-14879:GNPTABinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MDM2:GNPTAB}	32986929	NA	0	11	0	11
P-0045832-T01-IM6	SOMATIC	CSF1R	CPM	12	5	69319777	149449803	Intron of CPM(-):7Kb after exon 2	Exon 9 of CSF1R(-)	GRCh37	TRANSLOCATION	CSF1R (NM_005211) - CPM (NM_001005502) rearrangement: t(5;12)(q32;q15)(chr5:g.149449803::chr12:g.69319777)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CSF1R:CPM}	0	NA	0	83	10	84
P-0045836-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176132837	176176036	Intron of RFWD2(-):113bp after exon 4	Exon 1 of RFWD2(-)	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.79_c.642+114del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	43199	NA	0	32	10	33
P-0045875-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52613808	52620592	Intron of PBRM1(-):593bp before exon 22	Exon 21 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.3161_c.3313-593del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6784	NA	0	21	10	21
P-0045878-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1412534	1611769	Intron of DAZAP1(+):5Kb after exon 1	Exon 18 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1893:TCF3_chr19:g.1412534del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	199235	NA	0	99	10	108
P-0045881-T01-IM6	SOMATIC	EGFL7	EGFL7	9	9	139562857	139685238	Intron of EGFL7(+):43bp after exon 2	Promoter of TMEM141(+):538bp from tx start	GRCh37	DUPLICATION	EGFL7 (NM_201446) rearrangement: c.80+43:EGFL7_chr9:g.139685238dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TMEM141:EGFL7}	122381	NA	0	21	10	22
P-0042766-T02-IM6	SOMATIC	CALR	CALR	19	5	13054685	110677593	Exon 9 of CALR(+)	Intron of CAMK4(+):2Kb before exon 2	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(5;19)(q22.1;p13.2)(chr5:g.110677593::chr19:g.13054685)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	6	10	4
P-0045508-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123241776	130925993	Intron of FGFR2(-):1Kb after exon 17	IGR: 339Kb before MGMT(+)	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2301+1436:FGFR2_chr10:g.130925993inv	PRECISE		MANUAL_OK	3to3	-	7684217	NA	0	45	10	46
P-0045626-T01-IM6	SOMATIC	KMT2D	RILPL1	12	12	49423208	123988479	Exon 43 of KMT2D(-)	Intron of RILPL1(-):4Kb before exon 3	GRCh37	DUPLICATION	KMT2D (NM_003482) - RILPL1 (NM_178314) rearrangement: c.14051:KMT2D_c.461-4396:RILPL1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2D:RILPL1}	74565271	NA	0	15	10	58
P-0026774-T02-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72828319	73087045	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-):266Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8262:ZFHX3_chr16:g.73087045del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	258726	NA	0	7	9	7
P-0029401-T02-IM6	SOMATIC	BABAM1	DNAH14	19	1	17386670	225434872	Intron of BABAM1(+):36bp after exon 6	Intron of DNAH14(+):3Kb before exon 43	GRCh37	TRANSLOCATION	BABAM1 (NM_001033549) - DNAH14 (NM_001373) rearrangement: t(1;19)(q42.12;p13.11)(chr1:g.225434872::chr19:g.17386670)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BABAM1:DNAH14}	0	NA	0	6	10	6
P-0041092-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55183329	55221770	Intron of EGFR(+):27Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-26650_c.814del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	38441	NA	0	287	10	312
P-0041092-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268522	55271965	Intron of EGFR(+):358bp before exon 25	Intron of EGFR(+):983bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-359_c.3272-984del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3443	NA	0	66	10	69
P-0045460-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	245806197	246021906	Intron of KIF26B(+):3Kb before exon 10	Exon 10 of SMYD3(-)	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.968:SMYD3_chr1:g.245806197del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	215709	NA	0	4	8	4
P-0045460-T01-IM6	SOMATIC	RET	RET	10	10	43610285	51588385	Intron of RET(+):101bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7	GRCh37	DUPLICATION	RET (NM_020975) rearrangement: c.2136+101:RET_chr10:g.51588385dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7978100	NA	0	106	10	115
P-0045713-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114813082	114918483	Intron of TCF7L2(+):13Kb after exon 5	Intron of TCF7L2(+):655bp after exon 12	GRCh37	DUPLICATION	TCF7L2 (NM_001146274) rearrangement: c.552+13197_c.1318+655dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : out of frame	105401	NA	0	5	6	5
P-0045724-T01-IM6	SOMATIC	SPTBN1	ALK	2	2	29446796	54848081	Intron of ALK(-):402bp before exon 20	Intron of SPTBN1(+):455bp before exon 8	GRCh37	INVERSION	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.764-456:SPTBN1_c.3173-402:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SPTBN1:ALK}	25401285	NA	0	63	10	63
P-0045844-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86633845	102633074	Exon 5 of RASA1(+)	IGR: 39Kb before C5orf30(+)	GRCh37	INVERSION	RASA1 (NM_002890) rearrangement: c.954:RASA1_chr5:g.102633074inv	PRECISE		MANUAL_OK	5to5	-	15999229	NA	0	8	10	8
P-0045847-T01-IM6	SOMATIC	BCL2L14	CDKN1B	12	12	12243490	12871855	Intron of BCL2L14(+):222bp before exon 4	Exon 2 of CDKN1B(+)	GRCh37	DELETION	BCL2L14 (NM_138723) - CDKN1B (NM_004064) rearrangement: c.608-223:BCL2L14_c.572:CDKN1Bdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BCL2L14:CDKN1B}	628365	NA	0	5	0	8
P-0045858-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	9352182	38173038	IGR: 61Kb before TNKS(+)	Exon 11 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2011:WHSC1L1_chr8:g.9352182inv	PRECISE		MANUAL_OK	3to3	-	28820856	NA	0	7	10	7
P-0045861-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	10	89350468	116181365	Exon 9 of ANKRD11(-)	IGR: 10Kb before ABLIM1(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(10;16)(q25.3;q24.3)(chr10:g.116181365::chr16:g.89350468)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	19
P-0045862-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212568938	212570519	Intron of ERBB4(-):19bp before exon 11	Intron of ERBB4(-):403bp before exon 10	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.1125-403_c.1199-19del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1581	NA	0	4	5	4
P-0045863-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55143389	55222409	Intron of EGFR(+):56Kb after exon 1	Intron of EGFR(+):564bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+56331_c.889+564del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	79020	NA	0	57	10	79
P-0045865-T01-IM6	SOMATIC	CARM1	CARM1	19	19	10044605	11018782	Intron of OLFM2(-):2Kb after exon 1	Exon 3 of CARM1(+)	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: c.414:CARM1_chr19:g.10044605del	PRECISE		MANUAL_OK	3to5	-	974177	NA	0	49	10	53
P-0045890-T01-IM6	SOMATIC	NF1	NF1	17	17	29661990	29673904	Exon 40 of NF1(+)	Intron of NF1(+):2Kb before exon 49	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.5947_c.7190-2234dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11914	NA	0	4	10	9
P-0045893-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187625767	187630709	Intron of FAT1(-):2Kb after exon 2	Exon 2 of FAT1(-)	GRCh37	DUPLICATION	FAT1 (NM_005245) rearrangement: c.273_c.3265+1950dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4942	NA	0	25	0	27
P-0045893-T01-IM6	SOMATIC	NSD1	NRF1	7	5	129392537	176636731	Intron of NRF1(+):2Kb before exon 11	Exon 5 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) - NRF1 (NM_005011) rearrangement: t(5;7)(q35.3;q32.2)(chr5:g.176636731::chr7:g.129392537)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NSD1:NRF1}	0	NA	0	16	0	16
P-0045898-T01-IM6	SOMATIC	STAT5A	STAT5A	17	17	40456651	61466676	Exon 12 of STAT5A(+)	Exon 15 of TANC2(+)	GRCh37	INVERSION	STAT5A (NM_003152) rearrangement: c.1361:STAT5A_chr17:g.61466676inv	PRECISE		MANUAL_OK	5to5	-	21010025	NA	0	20	10	22
P-0045902-T01-IM6	SOMATIC	EGFLAM	RICTOR	5	5	38411379	38943110	Intron of EGFLAM(+):1Kb before exon 11	Intron of RICTOR(-):37bp before exon 37	GRCh37	INVERSION	EGFLAM (NM_001205301) - RICTOR (NM_152756) rearrangement: c.1350-1227:EGFLAM_c.4914-37:RICTORinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFLAM:RICTOR}	531731	NA	0	20	10	28
P-0045906-T01-IM6	SOMATIC	TP53	TP53	17	5	7578066	25413095	Intron of TP53(-):110bp after exon 6	IGR: 578Kb before LOC340107(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(5;17)(p14.1;p13.1)(chr5:g.25413095::chr17:g.7578066)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	9	0	9
P-0026158-T04-IM6	SOMATIC	MAD1L1	BRAF	7	7	2030039	140491749	Intron of MAD1L1(-):10Kb before exon 15	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	MAD1L1 (NM_001013837) - BRAF (NM_004333) fusion: c.1417-9863:MAD1L1_c.1140+2359:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MAD1L1:BRAF}	138461710	NA	0	325	10	342
P-0026158-T04-IM6	SOMATIC	ATRX	ATRX	X	X	76117797	76874245	3-UTR of MIR325HG(-):117Kb after coding stop	Intron of ATRX(-):28bp after exon 21	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.5448+29:ATRX_chrX:g.76117797del	IMPPRECISE		MANUAL_OK	3to5	-	756448	NA	0	6	0	7
P-0043972-T03-IM6	SOMATIC	NRF1	BRAF	7	7	129341505	140487712	Intron of NRF1(+):7Kb before exon 6	Intron of BRAF(-):328bp before exon 9	GRCh37	INVERSION	NRF1 (NM_005011) - BRAF (NM_004333) fusion: c.607-7410:NRF1_c.1141-328:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NRF1:BRAF}	11146207	NA	0	46	10	48
P-0045132-T02-IM6	SOMATIC	NTRK2	NTRK2	16	9	54959492	87476431	3-UTR of CRNDE(-):3Kb after coding stop	Intron of NTRK2(+):429bp after exon 15	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) rearrangement: t(9;16)(q21.33;q12.2)(chr9:g.87476431::chr16:g.54959492)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	150	10	167
P-0045651-T01-IM6	SOMATIC	ARID2	ARID2	13	12	77149393	46245145	IGR: 305Kb before KCTD12(-)	Exon 15 of ARID2(+)	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(12;13)(q12;q22.2)(chr12:g.46245145::chr13:g.77149393)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	44	10	44
P-0045651-T01-IM6	SOMATIC	WHSC1	TACC3	4	4	1745846	1903083	Intron of TACC3(+):398bp before exon 14	Intron of WHSC1(+):105bp after exon 2	GRCh37	DUPLICATION	WHSC1 (NM_001042424) - TACC3 (NM_006342) rearrangement: c.597+105:WHSC1_c.2224-399:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {WHSC1:TACC3}	157237	NA	0	27	10	30
P-0045660-T01-IM6	SOMATIC	APC	APC	5	5	112175494	112178976	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4203_c.7685del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3482	NA	0	21	10	22
P-0045661-T01-IM6	SOMATIC	APC	APC	5	5	77595801	112154997	IGR: 59Kb before SCAMP1-AS1(-)	Exon 10 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.1268:APC_chr5:g.77595801inv	PRECISE		MANUAL_OK	3to3	-	34559196	NA	0	55	10	59
P-0045662-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	19	14084697	18271878	Intron of RFX1(-):758bp before exon 9	Exon 5 of PIK3R2(+)	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement: c.481:PIK3R2_chr19:g.14084697del	PRECISE		MANUAL_OK	3to5	-	4187181	NA	0	19	10	19
P-0045709-T01-IM6	SOMATIC	BAP1	BAP1	13	3	108262196	52442050	Intron of FAM155A(-):256Kb after exon 1	Exon 5 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;13)(p21.1;q33.3)(chr3:g.52442050::chr13:g.108262196)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	32	10	34
P-0045727-T01-IM6	SOMATIC	SMO	SMO	7	7	128845359	128849102	Intron of SMO(+):91bp before exon 4	Intron of SMO(+):27bp before exon 8	GRCh37	DUPLICATION	SMO (NM_005631) rearrangement: c.748-92_c.1358-28dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	3743	NA	0	36	10	36
P-0045747-T01-IM6	SOMATIC	STK40	STK40	1	1	36805378	36809396	3-UTR of STK40(-):2Kb after coding stop	Intron of STK40(-):64bp after exon 10	GRCh37	INVERSION	STK40 (NM_032017) rearrangement: c.1004+65:STK40_chr1:g.36805378inv	PRECISE		MANUAL_OK	5to5	-	4018	NA	0	12	10	12
P-0045918-T01-IM6	SOMATIC	INPP4A	INPP4A	2	2	98539823	99155976	Intron of TMEM131(-):4Kb after exon 2	Intron of INPP4A(+):14bp before exon 10	GRCh37	DELETION	INPP4A (NM_001134224) rearrangement: c.671-15:INPP4A_chr2:g.98539823del	PRECISE		MANUAL_OK	3to5	-	616153	NA	0	27	10	27
P-0045919-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78408581	78414877	3-UTR of NEXN(+):27Kb after coding stop	Exon 19 of FUBP1(-)	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.1889:FUBP1_chr1:g.78408581del	PRECISE		MANUAL_OK	3to5	-	6296	NA	0	8	10	8
P-0045926-T01-IM6	SOMATIC	NSRP1	BRCA1	17	17	28451557	41243237	Intron of NSRP1(+):6Kb after exon 2	Intron of BRCA1(-):188bp before exon 11	GRCh37	INVERSION	NSRP1 (NM_032141) - BRCA1 (NM_007294) rearrangement: c.114+6366:NSRP1_c.4097-188:BRCA1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NSRP1:BRCA1}	12791680	NA	0	4	10	3
P-0046005-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10214783	10262143	Promoter of PPAN-P2RY11(+):2Kb from tx start	Exon 23 of DNMT1(-)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.2148:DNMT1_chr19:g.10214783inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PPAN-P2RY11:DNMT1}	47360	NA	0	7	10	8
P-0046008-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49435331	49436872	Intron of KMT2D(-):13bp before exon 31	Exon 25 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.5631_c.6235-13del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1541	NA	0	2	6	2
P-0006532-T02-IM6	SOMATIC	SMO	AHCYL2	7	7	128846514	128909627	Intron of SMO(+):86bp after exon 6	Intron of AHCYL2(+):44Kb after exon 1	GRCh37	DELETION	SMO (NM_005631) - AHCYL2 (NM_015328) rearrangement: c.1264+86:SMO_c.363+44347:AHCYL2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SMO:AHCYL2}	63113	NA	0	54	10	59
P-0009432-T02-IM6	SOMATIC	DOT1L	DOT1L	19	11	2208868	79148763	Intron of DOT1L(+):65bp before exon 12	5-UTR of TENM4(-):780Kb before coding start	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(11;19)(q14.1;p13.3)(chr11:g.79148763::chr19:g.2208868)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TENM4:DOT1L}	0	NA	0	48	10	60
P-0009432-T02-IM6	SOMATIC	PTPRS	PTPRS	19	19	3987676	5215785	Promoter of EEF2(-):12Kb from tx start	Intron of PTPRS(-):179bp before exon 27	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.4097-179:PTPRS_chr19:g.3987676inv	PRECISE		MANUAL_OK	3to3	-	1228109	NA	0	12	10	12
P-0014808-T03-IM6	SOMATIC	KIF5B	RET	10	10	32315592	43611056	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):872bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1764:KIF5B_c.2136+872:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295464	NA	0	72	10	95
P-0014808-T03-IM6	SOMATIC	RET	ERCC6	10	10	43611216	50725257	Intron of RET(+):815bp before exon 12	Intron of ERCC6(-):7Kb after exon 5	GRCh37	INVERSION	RET (NM_020975) - ERCC6 (NM_000124) rearrangement: c.2137-816:RET_c.1397+6822:ERCC6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RET:ERCC6}	7114041	NA	0	77	10	71
P-0019263-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46546331	46572069	Exon 2 of PIK3R3(-)	Intron of PIK3R3(-):25Kb after exon 1	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.106+25450_c.198del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25738	NA	0	5	10	5
P-0022907-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157527422	157530294	Exon 20 of ARID1B(+)	3-UTR of ARID1B(+):431Kb after coding stop	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5147_c.*1269del	PRECISE		MANUAL_OK	3to5	-	2872	NA	0	29	10	32
P-0024221-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11125511	11134093	Intron of SMARCA4(+):2Kb after exon 16	Intron of SMARCA4(+):100bp before exon 20	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2438+1723_c.2860-101del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	8582	NA	0	15	10	16
P-0024845-T04-IM6	SOMATIC	EWSR1	WT1	22	11	29684464	32417412	Intron of EWSR1(+):130bp before exon 9	Intron of WT1(-):390bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417412::chr22:g.29684464)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	125	10	123
P-0027735-T01-IM6	SOMATIC	TP53	TP53	17	17	7574034	7579749	Intron of TP53(-):1bp before exon 10	Intron of TP53(-):28bp before exon 3	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.75-2_c.994-1dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : out of frame	5715	NA	0	71	10	91
P-0027735-T01-IM6	SOMATIC	NF1	NF1	17	2	29664530	80131260	Exon 43 of NF1(+)	Intron of CTNNA2(+):5Kb before exon 7	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(2;17)(p12;q11.2)(chr2:g.80131260::chr17:g.29664530)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	83	10	82
P-0036844-T02-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	111885449	111910909	Intron of BCL2L11(+):4Kb after exon 2	Intron of BCL2L11(+):3Kb after exon 3	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+3733_c.498+3185del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	25460	NA	0	33	10	34
P-0043891-T02-IM6	SOMATIC	ELF3	ELF3	1	1	201980127	201982802	5-UTR of ELF3(+):137bp before coding start	Intron of ELF3(+):154bp before exon 8	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.806-155:ELF3_chr1:g.201980127del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2675	NA	0	30	10	31
P-0045171-T01-IM6	SOMATIC	TERT	TERT	5	5	1295249	141249342	Promoter of TERT(-):42Kb from tx start	Intron of PCDH1(-):346bp before exon 2	GRCh37	INVERSION	TERT (NM_198253) Rearrangement : chr5:g.1295249_c.41-346:PCDH1inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	139954093	NA	0	8	0	8
P-0045284-T02-IM6	SOMATIC	BRD4	BRD4	19	19	9473266	15350202	5-UTR of ZNF559-ZNF177(+):16Kb before coding start	Exon 17 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.3576+1:BRD4_chr19:g.9473266del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5876936	NA	0	9	10	9
P-0045322-T02-IM6	SOMATIC	RAF1	FAM198A	3	3	12647698	43059108	Intron of RAF1(-):1bp after exon 6	Intron of FAM198A(+):15Kb before exon 2	GRCh37	INVERSION	RAF1 (NM_002880) - FAM198A (NM_001129908) rearrangement: c.680+2:RAF1_c.4-14651:FAM198Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RAF1:FAM198A}	30411410	NA	0	10	10	12
P-0045322-T02-IM6	SOMATIC	TFG	ROS1	6	3	117644683	100448076	Intron of ROS1(-):811bp after exon 34	Intron of TFG(+):374bp after exon 4	GRCh37	TRANSLOCATION	TFG (NM_001195478) - ROS1 (NM_002944) fusion: t(3;6)(q12.2;q22.1)(chr3:g.100448076::chr6:g.117644683)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TFG:ROS1}	0	NA	0	20	10	19
P-0045683-T02-IM6	SOMATIC	KIAA1549	BRAF	7	7	138545943	140492850	Exon 16 of KIAA1549(-)	Intron of BRAF(-):1Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5189:KIAA1549_c.1140+1258:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIAA1549:BRAF}	1946907	NA	0	5	10	5
P-0045691-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70117734	72219596	Exon 1 of SOX9(+)	Intron of TTYH2(+):800bp after exon 2	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.202:SOX9_chr17:g.72219596inv	PRECISE		MANUAL_OK	5to5	-	2101862	NA	0	13	10	16
P-0045691-T01-IM6	SOMATIC	SOX9	SOX9	17	8	70117921	141408932	Exon 1 of SOX9(+)	Intron of TRAPPC9(-):1Kb before exon 7	GRCh37	TRANSLOCATION	SOX9 (NM_000346) rearrangement: t(8;17)(q24.3;q24.3)(chr8:g.141408932::chr17:g.70117921)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	21	10	22
P-0045947-T01-IM6	SOMATIC	JUN	JUN	1	1	59240840	59247990	IGR: 6Kb before JUN(-)	Exon 1 of JUN(-)	GRCh37	DELETION	JUN (NM_002228) rearrangement: c.753:JUN_chr1:g.59240840del	PRECISE		MANUAL_OK	3to5	-	7150	NA	0	12	10	12
P-0045959-T01-IM6	SOMATIC	MSH3	MSH3	5	5	79966739	79968497	Intron of MSH3(+):611bp after exon 4	Intron of MSH3(+):62bp before exon 6	GRCh37	DELETION	MSH3 (NM_002439) rearrangement: c.792+611_c.910-63del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1758	NA	0	14	10	15
P-0045964-T01-IM6	SOMATIC	TP53	TP53	17	17	7579094	7579724	Intron of TP53(-):217bp after exon 4	Intron of TP53(-):3bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-3_c.375+218del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	630	NA	0	19	10	19
P-0045987-T01-IM6	SOMATIC	SUZ12	SUZ12	17	17	30272545	30321746	Intron of SUZ12(+):2Kb before exon 4	Intron of SUZ12(+):6bp after exon 13	GRCh37	DUPLICATION	SUZ12 (NM_015355) rearrangement: c.387-2091_c.1595+6dup	PRECISE		MANUAL_OK	5to3	Duplication of 10 exons : in frame	49201	NA	0	9	10	44
P-0045994-T01-IM6	SOMATIC	TRAF7	TRAF7	16	16	2214184	2220735	Intron of TRAF7(+):182bp after exon 2	Intron of TRAF7(+):4bp after exon 5	GRCh37	DUPLICATION	TRAF7 (NM_032271) rearrangement: c.81+182_c.348+4dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	6551	NA	0	30	10	42
P-0045996-T01-IM6	SOMATIC	MGA	MGA	15	15	42026221	42032384	Intron of MGA(+):498bp before exon 12	Exon 14 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.3844-499_c.4568del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6163	NA	0	10	10	10
P-0046020-T01-IM6	SOMATIC	UNC13A	RAD50	19	5	17752171	131915030	Intron of UNC13A(-):30bp after exon 20	Exon 4 of RAD50(+)	GRCh37	TRANSLOCATION	UNC13A (NM_001080421) - RAD50 (NM_005732) rearrangement: t(5;19)(q31.1;p13.11)(chr5:g.131915030::chr19:g.17752171)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {UNC13A:RAD50}	0	NA	0	48	10	54
P-0046026-T01-IM6	SOMATIC	PNRC1	PNRC1	6	6	89780366	89792274	IGR: 10Kb before PNRC1(+)	Intron of PNRC1(+):1Kb after exon 1	GRCh37	DELETION	PNRC1 (NM_006813) rearrangement: c.540+1121:PNRC1_chr6:g.89780366del	PRECISE		MANUAL_OK	3to5	-	11908	NA	0	2	8	2
P-0046069-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38055116	38061168	IGR: 4Kb before FOXA1(-)	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.821:FOXA1_chr14:g.38055116del	PRECISE		MANUAL_OK	3to5	-	6052	NA	0	101	10	116
P-0046069-T01-IM6	SOMATIC	ERCC6L2	TSC1	9	9	98705140	135798769	Intron of ERCC6L2(+):1Kb after exon 12	Exon 6 of TSC1(-)	GRCh37	INVERSION	ERCC6L2 (NM_001010895) - TSC1 (NM_000368) rearrangement: c.1880+1309:ERCC6L2_c.474:TSC1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERCC6L2:TSC1}	37093629	NA	0	7	10	7
P-0046077-T01-IM6	SOMATIC	DOT1L	PSG8	19	19	2222367	43265882	Exon 24 of DOT1L(+)	Intron of PSG8(-):2Kb after exon 2	GRCh37	INVERSION	DOT1L (NM_032482) - PSG8 (NM_182707) rearrangement: c.3199:DOT1L_c.430+2186:PSG8inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {DOT1L:PSG8}	41043515	NA	0	140	10	142
P-0046083-T01-IM6	SOMATIC	EML4	ALK	2	2	29446665	42523642	Intron of ALK(-):271bp before exon 20	Intron of EML4(+):986bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+986:EML4_c.3173-271:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076977	NA	0	73	10	73
P-0046083-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180055946	180074181	Exon 8 of FLT4(-)	Intron of FLT4(-):2Kb after exon 1	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.58+2307_c.1039inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	18235	NA	0	287	0	583
P-0046092-T01-IM6	SOMATIC	WHSC1L1	ADAM32	8	8	38205079	39105057	Exon 2 of WHSC1L1(-)	Intron of ADAM32(+):1Kb after exon 17	GRCh37	INVERSION	WHSC1L1 (NM_023034) - ADAM32 (NM_145004) rearrangement: c.611:WHSC1L1_c.1902+1372:ADAM32inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WHSC1L1:ADAM32}	899978	NA	0	7	10	10
P-0046098-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46595077	46597663	Intron of PIK3R3(-):2Kb after exon 1	5-UTR of PIK3R3(-):88Kb before coding start	GRCh37	INVERSION	PIK3R3 (NM_003629) rearrangement: c.106+2442:PIK3R3_chr1:g.46597663inv	IMPPRECISE		MANUAL_OK	3to3	-	2586	NA	0	14	0	14
P-0046106-T01-IM6	SOMATIC	BBC3	BBC3	19	2	47729968	204419521	Exon 3 of BBC3(-)	IGR: 113Kb before RAPH1(-)	GRCh37	TRANSLOCATION	BBC3 (NM_001127240) rearrangement: t(2;19)(q33.2;q13.32)(chr2:g.204419521::chr19:g.47729968)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	23	10	31
P-0046108-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63534454	63550860	Exon 5 of AXIN2(-)	Intron of AXIN2(-):3Kb after exon 2	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.815+3064_c.1067del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16406	NA	0	57	10	60
P-0046110-T01-IM6	SOMATIC	RB1	RB1	13	13	48923168	48941346	Intron of RB1(+):9bp after exon 6	Intron of RB1(+):283bp before exon 10	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.607+9_c.940-284del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	18178	NA	0	65	10	67
P-0046151-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971331	22691184	Intron of CDKN2A(-):124bp before exon 2	5-UTR of LINC01239(+):133Kb before coding start	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-124:CDKN2A_chr9:g.22691184inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC01239:CDKN2A}	719853	NA	0	25	10	25
P-0046152-T01-IM6	SOMATIC	RBM10	TFE3	X	X	47044296	48895756	Intron of RBM10(+):157bp before exon 18	Exon 4 of TFE3(-)	GRCh37	INVERSION	RBM10 (NM_001204468) - TFE3 (NM_006521) rearrangement: c.2146-158:RBM10_c.746:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RBM10:TFE3}	1851460	NA	0	126	10	126
P-0046153-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	8	12870997	87279220	Exon 1 of CDKN1B(+)	IGR: 53Kb before SLC7A13(-)	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(8;12)(q21.3;p13.1)(chr8:g.87279220::chr12:g.12870997)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	38	10	38
P-0046159-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55203456	55222285	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):440bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-6523_c.889+440del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	18829	NA	0	246	10	691
P-0046160-T01-IM6	SOMATIC	TP63	TP63	3	3	189612274	189715390	Exon 14 of TP63(+)	Intron of LEPREL1(-):2Kb before exon 2	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.2026:TP63_chr3:g.189715390del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	103116	NA	0	20	10	20
P-0004871-T01-IM5	SOMATIC	BRAF	BRAF	7	7	140492384	156140327	Intron of BRAF(-): 2Kb after exon 8	IGR: 193Kb before NCRNA00244(+)	GRCh37	INVERSION	BRAF (NM_004333) rearrangement : c.1140+1724:BRAF_chr7:g.156140327inv	PRECISE		MANUAL_OK	3to3	-	15647943	NA	0	18	22	18
P-0005201-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	50212445	78921112	Intron of CA10(-):23Kb after exon 1	Exon 27 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: chr17:g.50212445_c.3226:RPTORdel	PRECISE		MANUAL_OK	3to5	-	28708667	NA	0	20	10	21
P-0007293-T01-IM5	SOMATIC	CTNNB1	CTNNB1	4	3	177727721	41267307	IGR: 14Kb after VEGFC(-)	Exon 6 of CTNNB1(+)	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) rearrangement : t(3;4)(p22.1;q34.3)(chr3:g.41267307::chr4:g.177727721)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	27	15	26
P-0007690-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	10684923	11172354	Intron of AP1M2(-):169bp after exon 11	Intron of SMARCA4(+):105bp before exon 35	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4912-106:SMARCA4_chr19:g.10684923del	IMPPRECISE		MANUAL_OK	3to5	-	487431	NA	0	7	0	8
P-0013845-T01-IM5	SOMATIC	PIK3C2G	PIK3C2G	12	12	18467093	83774061	Intron of PIK3C2G(+): 95bp after exon 6	IGR: 246Kb after TMTC2(+)	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.1137+95:PIK3C2G_chr12:g.83774061inv	PRECISE		MANUAL_OK	3to3	-	65306968	NA	0	10	11	10
P-0015717-T01-IM6	SOMATIC	PTPRD	ATP10A	15	9	26029000	8331699	Intron of ATP10A(-): 3Kb before exon 2	Exon 44 of PTPRD(-)	GRCh37	TRANSLOCATION	PTPRD (NM_002839) - ATP10A (NM_024490) rearrangement: t(9;15)(p24.1;q12)(chr9:g.8331699::chr15:g.26029000)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	102	44	136
P-0015717-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	17010343	38981976	IGR: 120Kb before LOC285696(-)	Exon 8 of RICTOR(-)	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.746_chr5:g.17010343inv	PRECISE		MANUAL_OK	5to5	-	21971633	NA	0	102	109	117
P-0015717-T01-IM6	SOMATIC	DROSHA	SH3GL2	9	5	17618065	31515314	Intron of SH3GL2(+): 39Kb after exon 1	Exon 7 of RNASEN(-)	GRCh37	TRANSLOCATION	DROSHA (NM_01323) - SH3GL2 (NM_003026) rearrangement: t(5;9)(p13.3;p22.2)(chr5:g.31515314::chr9:g.17618065)	IMPRECISE		MANUAL_OK	5to3	-	0	NA	0	102	0	217
P-0015717-T02-IM6	SOMATIC	PTPRD	ATP10A	15	9	26029000	8331699	Intron of ATP10A(-):3Kb before exon 2	Exon 44 of PTPRD(-)	GRCh37	TRANSLOCATION	PTPRD (NM_002839) - ATP10A (NM_024490) rearrangement: t(9;15)(p24.1;q12)(chr9:g.8331699::chr15:g.26029000)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	177	10	177
P-0015717-T02-IM6	SOMATIC	RICTOR	RICTOR	5	5	17010344	38981977	IGR: 120Kb before LOC285696(-)	Exon 8 of RICTOR(-)	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.746_chr5:g.17010344inv	PRECISE		MANUAL_OK	5to5	-	21971633	NA	0	123	10	251
P-0015717-T02-IM6	SOMATIC	DROSHA	SH3GL2	9	5	17618065	31515270	Intron of SH3GL2(+):39Kb after exon 1	Exon 7 of DROSHA(-)	GRCh37	TRANSLOCATION	DROSHA (NM_01323) - SH3GL2 (NM_003026) rearrangement: t(5;9)(p13.3;p22.2)(chr5:g.31515270::chr9:g.17618065)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	221	10	301
P-0019247-T03-IM6	SOMATIC	NTRK2	NTRK2	9	9	87476594	137594367	Intron of NTRK2(+):592bp after exon 15	Intron of COL5A1(+):1Kb after exon 4	GRCh37	INVERSION	NTRK2 (NM_006180) rearrangement: c.1444+592:NTRK2_chr9:g.137594367inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	50117773	NA	0	7	10	7
P-0021198-T01-IM6	SOMATIC	GSK3B	GSK3B	3	3	119585425	119586217	Intron of GSK3B(-):11bp after exon 9	Intron of GSK3B(-):742bp before exon 9	GRCh37	INVERSION	GSK3B (NM_002093) rearrangement: c.948+12_c.910-742inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	792	NA	0	3	10	3
P-0021365-T01-IM6	SOMATIC	ALK	ALK	10	2	27940671	29447348	IGR: 21Kb before MKX(-)	Intron of ALK(-):954bp before exon 20	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(2;10)(p23.2;p12.1)(chr2:g.29447348::chr10:g.27940671)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	94	10	110
P-0023323-T01-IM6	SOMATIC	YES1	YES1	18	18	732914	803969	Exon 11 of YES1(-)	5-UTR of YES1(-):80Kb before coding start	GRCh37	INVERSION	YES1 (NM_005433) rearrangement: c.1343_chr18:g.803969inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	71055	NA	0	67	10	95
P-0045456-T01-IM6	SOMATIC	MGA	MGA	15	15	36457287	42019367	IGR: 238Kb before MIR4510(+)	Intron of MGA(+):10bp before exon 10	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.3431-11:MGA_chr15:g.36457287del	PRECISE		MANUAL_OK	3to5	-	5562080	NA	0	4	9	4
P-0046109-T01-IM6	SOMATIC	PAX5	PAX5	9	9	34281545	36966785	Intron of KIF24(-):5Kb after exon 6	Intron of PAX5(-):64bp before exon 6	GRCh37	INVERSION	PAX5 (NM_016734) rearrangement: c.605-64:PAX5_chr9:g.34281545inv	PRECISE		MANUAL_OK	3to3	-	2685240	NA	0	16	10	16
P-0001055-T04-IM6	SOMATIC	NAB2	STAT6	12	12	57487938	57493208	Intron of NAB2(+):456bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-457:NAB2_c.1760:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5270	NA	0	23	10	23
P-0009346-T03-IM6	SOMATIC	ARID2	ARID2	20	12	38766766	46230932	IGR: 134Kb before LINC01370(+)	Intron of ARID2(+):158bp after exon 8	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(12;20)(q12;q12)(chr12:g.46230932::chr20:g.38766766)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	11
P-0023378-T01-IM6	SOMATIC	BRAF	AGK	7	7	140498362	141269941	Intron of BRAF(-):2Kb after exon 7	Intron of AGK(+):15Kb after exon 2	GRCh37	INVERSION	BRAF (NM_004333) - AGK (NM_018238) rearrangement: c.980+1800:BRAF_c.101+14574:AGKinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:AGK}	771579	NA	0	8	0	11
P-0024422-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41261482	41266564	5-UTR of CTNNB1(+):4Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) Rearrangement : c.-48-4030_c.361del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5082	NA	0	3	6	3
P-0025561-T01-IM6	SOMATIC	BRAF	AGK	7	7	140498874	141256139	Intron of BRAF(-):1Kb after exon 7	Intron of AGK(+):772bp after exon 2	GRCh37	INVERSION	BRAF (NM_004333) - AGK (NM_018238) Rearrangement: c.980+1288:BRAF_c.101+772:AGKinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:AGK}	757265	NA	0	30	10	31
P-0026406-T01-IM6	SOMATIC	NF1	NF1	17	17	29679406	69965826	Exon 51 of NF1(+)	IGR: 52Kb before LOC102723505(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7589:NF1_chr17:g.69965826del	PRECISE		MANUAL_OK	3to5	-	40286420	NA	0	35	10	37
P-0028078-T01-IM6	SOMATIC	MDM4	MDM4	1	1	204501182	248451616	Intron of MDM4(+):136bp before exon 5	IGR: 6Kb before OR2T12(-)	GRCh37	INVERSION	MDM4 (NM_002393) rearrangement: c.288-137:MDM4_chr1:g.248451616inv	PRECISE		MANUAL_OK	5to5	-	43950434	NA	0	5	10	5
P-0028707-T01-IM6	SOMATIC	STK11	STK11	19	19	1220532	1279387	Intron of STK11(+):28bp after exon 4	Promoter of C19orf24(+):4Kb from tx start	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.597+28:STK11_chr19:g.1279387del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {STK11:C19orf24}	58855	NA	0	2	3	2
P-0030796-T01-IM6	SOMATIC	LRRC16A	BRAF	7	6	140491645	25580104	Intron of BRAF(-):2Kb after exon 8	Intron of LRRC16A(+):1Kb before exon 30	GRCh37	TRANSLOCATION	LRRC16A (NM_017640) - BRAF (NM_004333) fusion (LRRC16A exons 1-29 fused to BRAF exons 9-18): t(6;7)(p22.2;q34)(chr6:g.25580104::chr7:g.140491645)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {LRRC16A:BRAF}	0	NA	0	143	10	143
P-0030830-T01-IM6	SOMATIC	EP300	EP300	22	22	41572861	41675184	Exon 31 of EP300(+)	Intron of RANGAP1(-):2Kb after exon 2	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.5146_chr22:g.41675184dup	PRECISE		MANUAL_OK	5to3	-	102323	NA	0	3	7	3
P-0032313-T04-IM6	SOMATIC	ROS1	ROS1	6	6	117643817	117885282	Intron of ROS1(-):1Kb before exon 35	Intron of DCBLD1(+):6Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5642-1260:ROS1_chr6:g.117885282del	PRECISE		MANUAL_OK	3to5	-	241465	NA	0	107	10	117
P-0032812-T01-IM6	SOMATIC	FYN	FYN	12	6	16974089	112020748	IGR: 168Kb before SKP1P2(+)	Exon 6 of FYN(-)	GRCh37	TRANSLOCATION	FYN (NM_153047) rearrangement: t(q21;p12.3)(chr6:g.112020748::chr12:g.16974089	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	7	7
P-0032812-T01-IM6	SOMATIC	PREX2	PREX2	8	8	57326304	68995525	IGR: 27Kb before PENK(-)	Exon 18 of PREX2(+)	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.1929:PREX2_chr8:g.57326304inv	PRECISE		MANUAL_OK	3to3	-	11669221	NA	0	22	10	22
P-0034041-T01-IM6	SOMATIC	RRAS	DLG2	19	11	50139014	83489667	Exon 5 of RRAS(-)	Intron of DLG2(-):8Kb after exon 18	GRCh37	TRANSLOCATION	RRAS (NM_006270) - DLG2 (NM_001142699) rearrangement: t(11;19)(q14.1;q13.33)(chr11:g.83489667::chr19:g.50139014)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RRAS:DLG2}	0	NA	0	60	10	66
P-0034041-T01-IM6	SOMATIC	KDR	KIT	4	4	55602515	55984457	Intron of KIT(+):148bp before exon 18	Intron of KDR(-):313bp after exon 3	GRCh37	INVERSION	KDR (NM_002253) - KIT (NM_000222) rearrangement: c.358+314:KDR_c.2485-149:KITinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KDR:KIT}	381942	NA	0	26	10	26
P-0034168-T01-IM6	SOMATIC	SND1	BRAF	7	7	127368426	140489421	Intron of SND1(+):7Kb after exon 10	Intron of BRAF(-):2Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion (SND1 exons 1-10 fused to BRAF exons 9-18): c.1152+6972:SND1_c.1141-2037:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13120995	NA	0	118	10	116
P-0034370-T01-IM6	SOMATIC	LATS2	LATS2	13	9	21555688	139825979	Exon 6 of LATS2(-)	IGR: 9Kb before FBXW5(-)	GRCh37	TRANSLOCATION	LATS2 (NM_014572) Rearrangement: t(9;13)(q34.3;q12.11)(chr9:g.139825979::chr13:g.21555688)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	25
P-0034710-T01-IM6	SOMATIC	TP53BP1	TP53BP1	20	15	22803318	43713243	IGR: 213Kb before SSTR4(+)	Exon 20 of TP53BP1(-)	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) Rearrangement :  t(15;20)(q11.21;p11.21)(chr15:g.43713243::chr20:g.22803318)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	10	23
P-0034710-T01-IM6	SOMATIC	TFAP2B	DAXX	6	6	33289546	50790611	Exon 2 of DAXX(-)	Intron of TFAP2B(+):508bp before exon 2	GRCh37	INVERSION	TFAP2B (NM_003221) - DAXX (NM_001141970)  Rearrangement : c.82-509:TFAP2B_c.193:DAXXinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TFAP2B:DAXX}	17501065	NA	0	11	10	13
P-0036240-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89685399	96615851	Intron of PTEN(+):85bp after exon 3	Promoter of CYP2C19(+):93Kb from tx start	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.209+85:PTEN_chr10:g.96615851inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	6930452	NA	0	25	10	27
P-0036424-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3786767	10485706	Exon 27 of CREBBP(-)	5-UTR of ATF7IP2(+):92Kb before coding start	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.4444:CREBBP_chr16:g.10485706inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATF7IP2:CREBBP}	6698939	NA	0	40	10	41
P-0036862-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	362099	396985	Intron of AXIN1(-):2Kb before exon 4	Exon 2 of AXIN1(-)	GRCh37	DELETION	AXIN1 (NM_003502) Rearrangement : c.41_c.1020-2030del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	34886	NA	0	100	10	104
P-0036862-T01-IM6	SOMATIC	SAE1	NOTCH2	19	1	47633732	120458500	Promoter of SAE1(+):347bp from tx start	Exon 34 of NOTCH2(-)	GRCh37	TRANSLOCATION	SAE1 (NM_005500) - NOTCH2 (NM_024408) Rearrangement : t(1;19)(p11.2;q13.1)(chr1:g.120458500::chr19:g.47633732)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SAE1:NOTCH2}	0	NA	0	32	10	32
P-0036866-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36228879	36231753	Intron of KMT2B(+):36bp after exon 35	Promoter of KMT2B(+):23Kb from tx start	GRCh37	DELETION	KMT2B (NM_014727) Rearrangement  : c.7742+36_c.*2295_	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2874	NA	0	17	10	17
P-0036866-T01-IM6	SOMATIC	NOL4	BCOR	X	20	39931932	31099042	Exon 4 of BCOR(-)	Intron of NOL4L(-):107bp after exon 4	GRCh37	TRANSLOCATION	NOL4 (NM_003787) - BCOR (NM_001123385) Rearrangement : t(X;20)(q11.4;q11.21)(chrX:g.39931932::chr20:g.31099042)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOL4L:BCOR}	0	NA	0	5	10	5
P-0036888-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	5	18515876	693447	Intron of PIK3C2G(+):8Kb before exon 12	5-UTR of TPPP(-):28Kb before coding start	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement: t(5;12)(p15.3;p12.3)(chr5:g.693447::chr12:g.18515876)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	21	10	20
P-0036888-T01-IM6	SOMATIC	HNF1A	HNF1A	12	5	121431804	41573867	Intron of HNF1A(+):162bp before exon 4	IGR: 156Kb before OXCT1(-)	GRCh37	TRANSLOCATION	HNF1A (NM_000545) rearrangement: t(5;12)(p13.1;q24.31)(chr5:g.41573867::chr12:g.121431804)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	83	10	82
P-0038393-T01-IM6	SOMATIC	PPP2R1A	LRP3	19	19	33697680	52709390	Intron of LRP3(+):41bp after exon 6	Intron of PPP2R1A(+):74bp after exon 3	GRCh37	DUPLICATION	PPP2R1A (NM_014225) - LRP3 (NM_002333)  rearrangement: c.270+74:PPP2R1A_ c.1725+41:LRP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PPP2R1A:LRP3}	19011710	NA	0	36	10	36
P-0038799-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176005746	176012837	Intron of RFWD2(-):7Kb after exon 14	Intron of RFWD2(-):8bp after exon 13	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.1530+9_c.1612+6576del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	7091	NA	0	28	10	32
P-0039162-T01-IM6	SOMATIC	MPL	PDZRN3	3	1	73597756	43806209	Intron of PDZRN3(-):54Kb after exon 3	Intron of MPL(+):25bp after exon 6	GRCh37	TRANSLOCATION	MPL (NM_005373) - PDZRN3 (NM_015009) rearrangement: t(1;3)(p34.2;p13)(chr1:g.43806209::chr3:g.73597756)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MPL:PDZRN3}	0	NA	0	7	10	9
P-0039162-T01-IM6	SOMATIC	ARID1B	ARID1B	6	5	157099879	15008789	Exon 1 of ARID1B(+)	IGR: 183Kb before MIR4637(-)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(5;6)(p15.1;q25.3)(chr5:g.15008789::chr6:g.157099879)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	30	10	31
P-0039162-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	7	72821085	30224334	Exon 10 of ZFHX3(-)	IGR: 50Kb before MTURN(+)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(7;16)(p14.3;q22.2)(chr7:g.30224334::chr16:g.72821085)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	40	10	41
P-0039629-T01-IM6	SOMATIC	MITF	MITF	16	3	56183319	69928477	3-UTR of LOC283856(-):42Kb after coding stop	Exon 2 of MITF(+)	GRCh37	TRANSLOCATION	MITF (NM_198159) rearrangement: t(3;16)(p13;q12.2)(chr3:g.69928477::chr16:g.56183319)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	20	0	20
P-0040246-T01-IM6	SOMATIC	ALDOA	IRS1	16	2	30081156	227660770	Exon 8 of ALDOA(+)	Exon 1 of IRS1(-)	GRCh37	TRANSLOCATION	ALDOA (NM_001243177) - IRS1 (NM_005544) rearrangement: t(2;16)(q36.3;p11.2)(chr2:g.227660770::chr16:g.30081156)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ALDOA:IRS1}	0	NA	0	12	0	14
P-0040246-T01-IM6	SOMATIC	IRS1	IRS1	22	2	47611716	227660594	IGR: 245Kb before LL22NC03-75H12.2(-)	Exon 1 of IRS1(-)	GRCh37	TRANSLOCATION	IRS1 (NM_005544) rearrangement: t(2;22)(q36.3;q13.31)(chr2:g.227660594::chr22:g.47611716)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	37	10	41
P-0043860-T02-IM6	SOMATIC	EML4	ALK	2	2	29446931	42527401	Intron of ALK(-):537bp before exon 20	Intron of EML4(+):979bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-980:EML4_c.3173-537:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080470	NA	0	64	10	134
P-0044233-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29684053	39756441	Intron of EWSR1(+):541bp before exon 9	Intron of ERG(-):596bp before exon 10	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39756441::chr22:g.29684053)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	18	10	17
P-0046112-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	43764201	55127478	IGR: 412Kb before KCTD8(-)	Exon 3 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.266:PDGFRA_chr4:g.43764201del	PRECISE		MANUAL_OK	3to5	-	11363277	NA	0	13	10	13
P-0046196-T01-IM6	SOMATIC	DLG1	PIK3CA	3	3	178916736	197005543	Exon 2 of PIK3CA(+)	Intron of DLG1(-):4Kb after exon 4	GRCh37	INVERSION	DLG1 (NM_004087) - PIK3CA (NM_006218) rearrangement: c.318+4007:DLG1_c.123:PIK3CAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DLG1:PIK3CA}	18088807	NA	0	21	10	21
P-0046202-T01-IM6	SOMATIC	UBA2	CEBPA	19	19	33792314	34923410	Exon 1 of CEBPA(-)	Intron of UBA2(+):574bp after exon 3	GRCh37	INVERSION	UBA2 (NM_005499) - CEBPA (NM_004364) rearrangement: c.293+574:UBA2_c.1007:CEBPAinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {UBA2:CEBPA}	1131096	NA	0	537	10	537
P-0046202-T01-IM6	SOMATIC	SMAD4	TTC28	22	18	29065731	48592015	Intron of TTC28(-):10Kb after exon 1	Intron of SMAD4(+):39bp after exon 9	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) - TTC28 (NM_001145418) rearrangement: t(18;22)(q21.2;q12.1)(chr18:g.48592015::chr22:g.29065731)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SMAD4:TTC28}	0	NA	0	11	0	11
P-0046209-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56477678	61084108	Exon 2 of ERBB3(+)	IGR: 1Mb before SLC16A7(+)	GRCh37	INVERSION	ERBB3 (NM_001982) rearrangement: c.226:ERBB3_chr12:g.61084108inv	PRECISE		MANUAL_OK	3to3	-	4606430	NA	0	150	10	149
P-0046209-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	2749239	5239049	IGR: 5Kb before SGTA(-)	Exon 13 of PTPRS(-)	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.1730:PTPRS_chr19:g.2749239inv	PRECISE		MANUAL_OK	5to5	-	2489810	NA	0	66	10	89
P-0046212-T01-IM6	SOMATIC	NF1	NF1	17	17	29646578	30703505	Intron of NF1(+):6Kb before exon 37	IGR: 26Kb before ZNF207(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.4836-6260:NF1_chr17:g.30703505inv	IMPPRECISE		MANUAL_OK	5to5	-	1056927	NA	0	5	0	6
P-0046219-T01-IM6	SOMATIC	AXL	AXL	19	19	41762540	48678698	Intron of AXL(+):24bp after exon 18	Intron of C19orf68(+):3Kb after exon 2	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.2196+24:AXL_chr19:g.48678698del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {AXL:C19orf68}	6916158	NA	0	12	10	12
P-0046223-T01-IM6	SOMATIC	PAX8	PAX8	7	2	137319687	113986394	Intron of DGKI(-):11Kb after exon 6	Intron of PAX8(-):2Kb before exon 10	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;7)(q13;q33)(chr2:g.113986394::chr7:g.137319687)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	10	0	12
P-0046235-T01-IM6	SOMATIC	BAP1	BAP1	3	3	51914799	52436396	IGR: 7Kb before IQCF5(-)	Exon 17 of BAP1(-)	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.2098:BAP1_chr3:g.51914799inv	PRECISE		MANUAL_OK	5to5	-	521597	NA	0	31	10	43
P-0046236-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21966591	21968259	Promoter of CDKN2A(-):1Kb from tx start	Intron of CDKN2A(-):18bp before exon 3	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-18:CDKN2A_chr9:g.21966591del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1668	NA	0	28	10	29
P-0046243-T01-IM6	SOMATIC	RB1	RB1	13	13	48878049	52414371	Exon 1 of RB1(+)	3-UTR of LINC00282(-):5Kb after coding stop	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1:RB1_chr13:g.52414371inv	PRECISE		MANUAL_OK	5to5	-	3536322	NA	0	24	10	41
P-0046246-T01-IM6	SOMATIC	AXL	ACPP	19	3	41745897	132075952	Intron of AXL(+):272bp after exon 10	Intron of ACPP(+):253bp after exon 10	GRCh37	TRANSLOCATION	AXL (NM_021913) - ACPP (NM_001134194) rearrangement: t(3;19)(q22.1;q13.2)(chr3:g.132075952::chr19:g.41745897)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AXL:ACPP}	0	NA	0	23	10	22
P-0046250-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36206696	36281931	Intron of RUNX1(-):10bp after exon 7	Intron of RUNX1(-):17Kb before exon 3	GRCh37	INVERSION	RUNX1 (NM_001754) rearrangement: c.59-16671_c.805+11inv	PRECISE		MANUAL_OK	3to3	-	75235	NA	0	3	7	3
P-0046253-T01-IM6	SOMATIC	PBRM1	PBRM1	22	3	41866350	52668553	Intron of ACO2(+):1Kb after exon 1	Intron of PBRM1(-):64bp after exon 12	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(3;22)(p21.1;q13.2)(chr3:g.52668553::chr22:g.41866350)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	9	0	9
P-0046254-T01-IM6	SOMATIC	KMT2D	KMT2D	X	12	133357229	49435733	IGR: 14Kb before CCDC160(+)	Exon 29 of KMT2D(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(12;X)(q13.12;q26.2)(chr12:g.49435733::chrX:g.133357229)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0046259-T01-IM6	SOMATIC	ANKRD11	PIEZO1	16	16	88829476	89334955	Intron of PIEZO1(-):14Kb before exon 2	Exon 13 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) - PIEZO1 (NM_001142864) rearrangement: c.7923:ANKRD11_c.65-13589:PIEZO1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ANKRD11:PIEZO1}	505479	NA	0	19	10	26
P-0046259-T01-IM6	SOMATIC	NCOA3	NCOA3	20	9	46279928	72660473	Exon 20 of NCOA3(+)	Intron of MAMDC2(+):860bp after exon 2	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) rearrangement: t(9;20)(q21.12;q13.12)(chr9:g.72660473::chr20:g.46279928)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	10	33
P-0046260-T01-IM6	SOMATIC	ALG9	KMT2A	11	11	111666451	118382639	Intron of ALG9(-):9Kb before exon 16	Intron of KMT2A(+):26bp before exon 31	GRCh37	INVERSION	ALG9 (NM_001077690) - KMT2A (NM_001197104) rearrangement: c.1714-9207:ALG9_c.11072-27:KMT2Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ALG9:KMT2A}	6716188	NA	0	4	10	5
P-0046261-T01-IM6	SOMATIC	MAP3K1	MAP3K1	12	5	4987480	56179537	IGR: 32Kb before KCNA1(+)	Intron of MAP3K1(+):31bp after exon 15	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) rearrangement: t(5;12)(q11.2;p13.32)(chr5:g.56179537::chr12:g.4987480)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	10
P-0046289-T01-IM6	SOMATIC	POLE	POLE	12	12	133228774	133249056	Intron of POLE(-):2Kb before exon 30	Intron of POLE(-):148bp before exon 16	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.1687-148_c.3583-2299del	PRECISE		MANUAL_OK	3to5	Deletion of 14 exons : in frame	20282	NA	0	4	10	4
P-0046289-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	3	11094870	147002061	Exon 2 of SMARCA4(+)	IGR: 102Kb before ZIC4(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(3;19)(q24;p13.2)(chr3:g.147002061::chr19:g.11094870)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	68	10	97
P-0046296-T01-IM6	SOMATIC	RET	RET	13	10	22535936	43611791	IGR: 89Kb before LINC00424(-)	Intron of RET(+):240bp before exon 12	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(10;13)(q11.21;q12.11)(chr10:g.43611791::chr13:g.22535936)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0046298-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27031108	27100994	Intron of ARID1A(+):7Kb after exon 1	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+7077_c.4276del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	69886	NA	0	7	10	7
P-0046298-T01-IM6	SOMATIC	ATP6V0A1	STAT5A	17	17	40459452	40627350	Exon 15 of STAT5A(+)	Intron of ATP6V0A1(+):2Kb before exon 6	GRCh37	DUPLICATION	ATP6V0A1 (NM_001130020) - STAT5A (NM_003152) rearrangement: c.424-2307:ATP6V0A1_c.1713:STAT5Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATP6V0A1:STAT5A}	167898	NA	0	11	10	12
P-0046315-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878565	42878705	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+1172:TMPRSS2_c.40-61021:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000140	NA	0	24	10	24
P-0046321-T01-IM6	SOMATIC	STK11	STK11	19	18	1220489	32923566	Exon 4 of STK11(+)	5-UTR of ZNF24(-):6Kb before coding start	GRCh37	TRANSLOCATION	STK11 (NM_000455) rearrangement: t(18;19)(q12.2;p13.3)(chr18:g.32923566::chr19:g.1220489)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {STK11:ZNF24}	0	NA	0	73	10	72
P-0046327-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123325200	123328804	Exon 3 of FGFR2(-)	Intron of FGFR2(-):4Kb before exon 3	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.110-3586_c.128del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3604	NA	0	22	10	25
P-0046327-T01-IM6	SOMATIC	KMT2C	KMT2C	14	7	104911186	151878606	IGR: 135Kb before C14orf180(+)	Exon 36 of KMT2C(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(7;14)(q36.1;q32.33)(chr7:g.151878606::chr14:g.104911186)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	39
P-0004226-T03-IM6	SOMATIC	INPPL1	FCHSD2	11	11	71945742	72678693	Intron of INPPL1(+):83bp after exon 21	Intron of FCHSD2(-):16Kb after exon 8	GRCh37	INVERSION	INPPL1 (NM_001567) - FCHSD2 (NM_014824) rearrangement: c.2415+83:INPPL1_c.705+16440:FCHSD2inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {INPPL1:FCHSD2}	732951	NA	0	20	0	20
P-0012674-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89688678	89690880	Intron of PTEN(+):2Kb before exon 4	Intron of PTEN(+):34bp after exon 4	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.210-2125_c.253+34dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2202	NA	0	13	10	22
P-0012674-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46231055	46245882	Intron of ARID2(+):48bp before exon 9	Exon 15 of ARID2(+)	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.1024-49_c.3976dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	14827	NA	0	10	10	68
P-0046398-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487473	57493589	Intron of NAB2(+):92bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+92:NAB2_c.1705:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	6116	NA	0	35	10	34
P-0046401-T01-IM6	SOMATIC	NF1	NF1	17	17	29650931	29657466	Intron of NF1(+):2Kb before exon 37	Exon 39 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4836-1907_c.5762dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6535	NA	0	118	10	122
P-0039980-T02-IM6	SOMATIC	NF1	NF1	17	8	29528649	50391945	Intron of NF1(+):146bp after exon 11	IGR: 407Kb before C8orf22(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(8;17)(q11.21;q11.2)(chr8:g.50391945::chr17:g.29528649)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0040073-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15274237	15278065	Intron of NOTCH3(-):864bp before exon 32	Exon 29 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.5357_c.5816-864del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3828	NA	0	9	10	9
P-0040863-T03-IM6	SOMATIC	TERT	TERT	6	5	56123082	1295376	IGR: 15Kb before RNU6-71P(-)	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;6)(p15.33;p12.1)(chr5:g.1295376::chr6:g.56123082)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	20
P-0043747-T02-IM6	SOMATIC	AGO2	AGO2	8	8	141541880	141542584	3-UTR of AGO2(-):262bp after coding stop	Exon 18 of AGO2(-)	GRCh37	INVERSION	AGO2 (NM_012154) rearrangement: c.2402:AGO2_chr8:g.141541880inv	PRECISE		MANUAL_OK	3to3	-	704	NA	0	3	8	3
P-0044088-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684345	32416077	Intron of EWSR1(+):249bp before exon 9	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416077::chr22:g.29684345)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	51	10	49
P-0046067-T03-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271157	38277073	Exon 19 of FGFR1(-)	Exon 10 of FGFR1(-)	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.1355_c.2551dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5916	NA	0	27	10	43
P-0046381-T02-IM6	SOMATIC	ACTB	GLI1	12	7	57859345	5568706	Intron of GLI1(+):44bp before exon 6	Intron of ACTB(-):85bp after exon 3	GRCh37	TRANSLOCATION	ACTB (NM_001101) - GLI1 (NM_005269) rearrangement: t(7;12)(p22.1;q13.3)(chr7:g.5568706::chr12:g.57859345)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ACTB:GLI1}	0	NA	0	7	0	7
P-0046433-T01-IM6	SOMATIC	NF1	NF1	17	17	29454637	29652924	Intron of NF1(+):28Kb before exon 2	Exon 37 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.61-28364_c.4922dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	198287	NA	0	5	0	5
P-0046451-T01-IM6	SOMATIC	RAB11FIP4	NF1	17	17	29683959	29761885	Intron of NF1(+):18bp before exon 53	Intron of RAB11FIP4(+):745bp after exon 3	GRCh37	DUPLICATION	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) rearrangement: c.336+745:RAB11FIP4_c.7739-19:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RAB11FIP4:NF1}	77926	NA	0	5	7	5
P-0046463-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871198	42874938	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4822:TMPRSS2_c.40-53654:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3003740	NA	0	90	10	94
P-0046467-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	403622	404835	Intron of KDM5A(-):1Kb after exon 26	Exon 26 of KDM5A(-)	GRCh37	DELETION	KDM5A (NM_001042603) rearrangement: c.4359_c.4455+1117del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1213	NA	0	29	10	28
P-0046471-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120365105	120465418	IGR: 12Kb before NBPF7(-)	Intron of NOTCH2(-):17bp before exon 27	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.4860-17:NOTCH2_chr1:g.120365105inv	PRECISE		MANUAL_OK	3to3	-	100313	NA	0	21	10	24
P-0046480-T01-IM6	SOMATIC	PPM1D	PPM1D	17	17	58662102	58700866	5-UTR of LOC388406(+):2Kb before coding start	Intron of PPM1D(+):15bp before exon 2	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: c.473-16:PPM1D_chr17:g.58662102del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {LOC388406:PPM1D}	38764	NA	0	6	0	6
P-0046552-T01-IM6	SOMATIC	RICTOR	RICTOR	20	5	50693085	39074150	IGR: 7Kb before ZFP64(-)	Intron of RICTOR(-):62bp after exon 2	GRCh37	TRANSLOCATION	RICTOR (NM_152756) rearrangement: t(5;20)(p13.1;q13.2)(chr5:g.39074150::chr20:g.50693085)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	8	6
P-0044470-T04-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	4	128230200	23486215	Intron of MAPKAP1(-):50bp after exon 10	IGR: 286Kb before MIR548AJ2(-)	GRCh37	TRANSLOCATION	MAPKAP1 (NM_001006617) rearrangement: t(4;9)(p15.2;q33.3)(chr4:g.23486215::chr9:g.128230200)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	36	10	39
P-0044577-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3900568	3929690	Exon 2 of CREBBP(-)	Intron of CREBBP(-):142bp after exon 1	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.85+143_c.528dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	29122	NA	0	37	10	39
P-0045227-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29684323	128647321	Intron of EWSR1(+):271bp before exon 9	Intron of FLI1(+):4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128647321::chr22:g.29684323)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	82	10	91
P-0046302-T01-IM6	SOMATIC	BCL6	BCL6	X	3	124583919	187449630	IGR: 130Kb before LOC100129520(+)	Exon 4 of BCL6(-)	GRCh37	TRANSLOCATION	BCL6 (NM_001706) rearrangement: t(3;X)(q27.3;q25)(chr3:g.187449630::chrX:g.124583919)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	57	10	61
P-0046306-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89690732	89692921	Intron of PTEN(+):70bp before exon 4	Exon 5 of PTEN(+)	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.210-71_c.405dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2189	NA	0	20	10	38
P-0046342-T01-IM6	SOMATIC	NSD1	NSD1	5	5	175874680	176618798	Promoter of FAF2(+):675bp from tx start	Intron of NSD1(+):86bp before exon 3	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.928-87:NSD1_chr5:g.175874680del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FAF2:NSD1}	744118	NA	0	34	10	36
P-0046360-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	65619132	72991329	IGR: 301Kb before LINC00922(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2716:ZFHX3_chr16:g.65619132del	PRECISE		MANUAL_OK	3to5	-	7372197	NA	0	52	10	97
P-0046362-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875970	42877789	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2088:TMPRSS2_c.40-58426:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3001819	NA	0	47	10	52
P-0046364-T01-IM6	SOMATIC	CHEK2	TTC28	22	22	28935780	29095895	Intron of TTC28(-):90Kb after exon 2	Exon 9 of CHEK2(-)	GRCh37	DELETION	CHEK2 (NM_007194) - TTC28 (NM_001145418) rearrangement: c.939:CHEK2_c.381+89760:TTC28del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CHEK2:TTC28}	160115	NA	0	20	10	20
P-0046495-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72804103	72830512	IGR: 13Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.6069:ZFHX3_chr16:g.72804103del	IMPPRECISE		MANUAL_OK	3to5	-	26409	NA	0	44	0	44
P-0046498-T01-IM6	SOMATIC	FGFR4	FGFR4	5	5	176219156	176523597	IGR: 18Kb before UNC5A(+)	Intron of FGFR4(+):7bp before exon 16	GRCh37	DELETION	FGFR4 (NM_213647) rearrangement: c.2016-8:FGFR4_chr5:g.176219156del	PRECISE		MANUAL_OK	3to5	-	304441	NA	0	2	7	2
P-0046527-T01-IM6	SOMATIC	PREX2	PREX2	16	8	50865290	69021796	IGR: 89Kb before CYLD(+)	Exon 25 of PREX2(+)	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(8;16)(q13.2;q12.1)(chr8:g.69021796::chr16:g.50865290)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	47	10	54
P-0046527-T01-IM6	SOMATIC	NBN	NBN	8	8	90993109	90995010	Exon 4 of NBN(-)	Exon 2 of NBN(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.111_c.333inv	PRECISE		MANUAL_OK	3to3	-	1901	NA	0	15	10	15
P-0046527-T01-IM6	SOMATIC	ATRX	ATRX	X	8	76776451	89361199	Intron of ATRX(-):57bp before exon 34	IGR: 312Kb before MMP16(-)	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement: t(8;X)(q21.3;q21.1)(chr8:g.89361199::chrX:g.76776451)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	7	8
P-0046530-T01-IM6	SOMATIC	MAP3K14	SMURF2	17	17	43348562	62584761	Exon 10 of MAP3K14(-)	Intron of SMURF2(-):2Kb after exon 5	GRCh37	DUPLICATION	MAP3K14 (NM_003954) - SMURF2 (NM_022739) rearrangement: c.1683:MAP3K14_c.400+2441:SMURF2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAP3K14:SMURF2}	19236199	NA	0	231	10	237
P-0046530-T01-IM6	SOMATIC	MLH1	MLH1	19	3	8765208	37038246	IGR: 43Kb before ACTL9(-)	Intron of MLH1(+):46bp after exon 2	GRCh37	TRANSLOCATION	MLH1 (NM_000249) rearrangement: t(3;19)(p22.2;p13.2)(chr3:g.37038246::chr19:g.8765208)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	27	0	29
P-0028499-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15296629	15298104	Intron of NOTCH3(-):139bp before exon 13	Exon 11 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1652_c.1952-139del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1475	NA	0	87	10	89
P-0040120-T03-IM6	SOMATIC	TP53	TP53	17	17	7577142	8126786	Exon 8 of TP53(-)	3-UTR of LINC00324(-):575bp after coding stop	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.796:TP53_chr17:g.8126786del	PRECISE		MANUAL_OK	3to5	-	549644	NA	0	65	10	129
P-0040120-T03-IM6	SOMATIC	EGFR	EGFR	7	7	55200454	55223497	Intron of EGFR(+):10Kb before exon 2	Intron of EGFR(+):25bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-9525_c.890-26inv	PRECISE		MANUAL_OK	5to5	-	23043	NA	0	229	10	347
P-0046404-T01-IM6	SOMATIC	RAC2	ATP6V0A4	22	7	37637553	138393574	Intron of RAC2(-):73bp after exon 2	Intron of ATP6V0A4(-):794bp after exon 20	GRCh37	TRANSLOCATION	RAC2 (NM_002872) - ATP6V0A4 (NM_130841) rearrangement: t(7;22)(q34;q13.1)(chr7:g.138393574::chr22:g.37637553)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RAC2:ATP6V0A4}	0	NA	0	70	0	69
P-0046576-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202136397	202138408	Intron of CASP8(+):53bp after exon 3	Intron of CASP8(+):743bp after exon 5	GRCh37	INVERSION	CASP8 (NM_001080125) rearrangement: c.588+53_c.772+743inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	2011	NA	0	6	0	6
P-0046579-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	19	12	41278692	18524131	Promoter of MIA-RAB4B(+):3Kb from tx start	Exon 12 of PIK3C2G(+)	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement: t(12;19)(p12.3;q13.2)(chr12:g.18524131::chr19:g.41278692)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MIA-RAB4B:PIK3C2G}	0	NA	0	8	10	9
P-0046580-T01-IM6	SOMATIC	ATF6	NUF2	1	1	161844547	163325067	Intron of ATF6(+):11Kb after exon 14	Intron of NUF2(+):57bp before exon 14	GRCh37	DELETION	ATF6 (NM_007348) - NUF2 (NM_031423) rearrangement: c.1719+11445:ATF6_c.1261-58:NUF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ATF6:NUF2}	1480520	NA	0	8	6	8
P-0046582-T01-IM6	SOMATIC	STAG2	STAG2	X	X	122976403	123190021	IGR: 17Kb before XIAP(+)	Exon 14 of STAG2(+)	GRCh37	INVERSION	STAG2 (NM_001042749) rearrangement: c.1240:STAG2_chrX:g.122976403inv	PRECISE		MANUAL_OK	5to5	-	213618	NA	0	25	10	30
P-0046586-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39832188	42873563	Intron of ERG(-):15Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3447:TMPRSS2_c.19-14644:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3041375	NA	0	12	10	12
P-0046592-T01-IM6	SOMATIC	RARA	RARA	17	17	38498761	38508908	Intron of RARA(+):6Kb before exon 3	Intron of RARA(+):149bp after exon 6	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.179-5807_c.807+149inv	PRECISE		MANUAL_OK	5to5	-	10147	NA	0	5	8	5
P-0046594-T01-IM6	SOMATIC	EML4	ALK	2	2	29446445	42494088	Intron of ALK(-):51bp before exon 20	Intron of EML4(+):2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2217:EML4_c.3173-51:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13047643	NA	0	9	7	9
P-0044491-T03-IM6	SOMATIC	RECQL	RECQL	12	12	19939814	21624364	IGR: 228Kb before LOC100506393(+)	Exon 14 of RECQL(-)	GRCh37	INVERSION	RECQL (NM_032941) rearrangement: c.1665:RECQL_chr12:g.19939814inv	PRECISE		MANUAL_OK	5to5	-	1684550	NA	0	157	10	280
P-0044491-T03-IM6	SOMATIC	MDC1	MDC1	6	6	15091876	30671141	IGR: 154Kb before JARID2(+)	Intron of MDC1(-):53bp after exon 11	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.5682+54:MDC1_chr6:g.15091876inv	IMPPRECISE		MANUAL_OK	5to5	-	15579265	NA	0	60	0	82
P-0046612-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11162181	11169464	Intron of SMARCA4(+):7Kb before exon 31	Exon 32 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4425-6750_c.4534del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7283	NA	0	12	10	11
P-0046612-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1817511	1955119	Exon 13 of LETM1(-)	Exon 12 of WHSC1(+)	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.2206:WHSC1_chr4:g.1817511dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	137608	NA	0	11	10	11
P-0046623-T01-IM6	SOMATIC	RAC2	RAC2	22	22	36088023	37629276	IGR: 26Kb before APOL5(+)	Intron of RAC2(-):318bp before exon 3	GRCh37	INVERSION	RAC2 (NM_002872) rearrangement: c.108-318:RAC2_chr22:g.36088023inv	PRECISE		MANUAL_OK	3to3	-	1541253	NA	0	9	10	11
P-0046624-T01-IM6	SOMATIC	SPATA2L	FANCA	16	16	89765309	89869723	Intron of SPATA2L(-):596bp before exon 3	Exon 8 of FANCA(-)	GRCh37	DUPLICATION	SPATA2L (NM_152339) - FANCA (NM_000135) rearrangement: c.304-596:SPATA2L_c.736:FANCAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPATA2L:FANCA}	104414	NA	0	12	10	21
P-0046624-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16022833	16345142	Intron of NCOR1(-):34bp before exon 17	5-UTR of LRRC75A-AS1(+):29Kb before coding start	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.1853-34:NCOR1_chr17:g.16345142del	PRECISE		MANUAL_OK	3to5	-	322309	NA	0	13	10	13
P-0046628-T01-IM6	SOMATIC	APC	APC	5	5	112163900	112177516	Intron of APC(+):197bp after exon 13	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1626+197_c.6225del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13616	NA	0	13	10	13
P-0046629-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968269	21992352	Intron of CDKN2A(-):28bp before exon 3	Intron of CDKN2A(-):2Kb after exon 1	GRCh37	DELETION	CDKN2A (NM_058195, NM_000077) rearrangement: c.458-28:NM_000077_c.193+1786:NM_058195del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	24083	NA	0	11	10	11
P-0046629-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44623978	44919341	IGR: 79Kb before DUSP21(+)	Exon 13 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.1269:KDM6A_chrX:g.44623978del	PRECISE		MANUAL_OK	3to5	-	295363	NA	0	5	10	11
P-0021937-T03-IM6	SOMATIC	KIF5B	RET	10	10	32316470	43611555	Intron of KIF5B(-):885bp after exon 15	Intron of RET(+):476bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+886:KIF5B_c.2137-477:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11295085	NA	0	188	10	265
P-0034062-T02-IM6	SOMATIC	ATRX	ATRX	X	11	76907888	129873889	Intron of ATRX(-):45bp before exon 15	5-UTR of LINC00167(+):1Kb before coding start	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement: t(11;X)(q24.3;q21.1)(chr11:g.129873889::chrX:g.76907888)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC00167:ATRX}	0	NA	0	7	10	7
P-0046538-T01-IM6	SOMATIC	RB1	RB1	13	13	49030451	49032144	Exon 19 of RB1(+)	Intron of RB1(+):2Kb after exon 19	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1926_c.1960+1659del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1693	NA	0	77	10	80
P-0046560-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156109664	156845149	3-UTR of LMNA(+):25Kb after coding stop	Intron of NTRK1(+):162bp before exon 12	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.1355-163:NTRK1_chr1:g.156109664del	PRECISE		MANUAL_OK	3to5	-	735485	NA	0	131	10	134
P-0046560-T01-IM6	SOMATIC	BRCA1	BRCA1	21	17	16934905	41199659	IGR: 167Kb before USP25(+)	Exon 22 of BRCA1(-)	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(17;21)(q21.31;q21.1)(chr17:g.41199659::chr21:g.16934905)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	44	10	48
P-0046564-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53253974	53255881	Exon 1 of KDM5C(-)	Promoter of KDM5C(-):35Kb from tx start	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.98:KDM5C_chrX:g.53255881del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1907	NA	0	25	10	29
P-0046569-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39837344	42869520	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):525bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+526:TMPRSS2_c.19-19800:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3032176	NA	0	23	10	23
P-0046600-T01-IM6	SOMATIC	ZNF277	MET	7	7	111889264	116409708	Intron of ZNF277(+):38Kb before exon 2	Exon 12 of MET(+)	GRCh37	DELETION	ZNF277 (NM_021994) - MET (NM_000245) fusion: c.92-37664:ZNF277_c.2593:METdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZNF277:MET}	4520444	NA	0	8	7	8
P-0046601-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113980118	160291186	Intron of PAX8(-):2Kb before exon 11	Intron of BAZ2B(-):1Kb before exon 9	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.1190-2363:PAX8_chr2:g.160291186inv	PRECISE		MANUAL_OK	3to3	-	46311068	NA	0	5	5	5
P-0046601-T01-IM6	SOMATIC	CD74	CD74	5	5	149771672	149784801	Exon 20 of TCOF1(+)	Intron of CD74(-):58bp before exon 5	GRCh37	DELETION	CD74 (NM_001025159) rearrangement: c.442-58:CD74_chr5:g.149771672del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	13129	NA	0	197	10	211
P-0046602-T01-IM6	SOMATIC	POLE	POLE	12	12	132084145	133218030	IGR: 111Kb before SFSWAP(+)	Intron of POLE(-):202bp after exon 39	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.5378+203:POLE_chr12:g.132084145del	PRECISE		MANUAL_OK	3to5	-	1133885	NA	0	10	10	10
P-0044415-T02-IM6	SOMATIC	FGFR3	FGFR3	4	4	1774446	1807576	IGR: 21Kb before FGFR3(+)	Exon 13 of FGFR3(+)	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.1745:FGFR3_chr4:g.1774446del	PRECISE		MANUAL_OK	3to5	-	33130	NA	0	31	10	35
P-0045809-T02-IM6	SOMATIC	SUFU	SUFU	10	3	104389884	85786435	Exon 12 of SUFU(+)	Intron of CADM2(+):65Kb before exon 2	GRCh37	TRANSLOCATION	SUFU (NM_016169) rearrangement: t(3;10)(p12.1;q24.32)(chr3:g.85786435::chr10:g.104389884)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	6
P-0045809-T02-IM6	SOMATIC	RET	FBXL7	10	5	43622269	15556734	Intron of RET(+):99bp after exon 19	Intron of FBXL7(+):56Kb after exon 1	GRCh37	TRANSLOCATION	RET (NM_020975) - FBXL7 (NM_012304) fusion: t(5;10)(p15.1;q11.21)(chr5:g.15556734::chr10:g.43622269)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RET:FBXL7}	0	NA	0	5	0	5
P-0046563-T01-IM6	SOMATIC	NTRK3	NTRK3	15	15	88679865	88718860	Intron of NTRK3(-):25bp before exon 8	Intron of NTRK3(-):8Kb after exon 5	GRCh37	DELETION	NTRK3 (NM_001012338) rearrangement: c.395+7789_c.623-25del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	38995	NA	0	28	10	28
P-0046563-T01-IM6	SOMATIC	NF1	NF1	17	4	29661961	45420174	Exon 40 of NF1(+)	IGR: 618Kb before GABRG1(-)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(4;17)(p12;q11.2)(chr4:g.45420174::chr17:g.29661961)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	13
P-0000509-T04-IM6	SOMATIC	PTEN	PTEN	12	10	379839	89717443	IGR: 9Kb before KDM5A(-)	Intron of PTEN(+):166bp before exon 7	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;12)(q23.31;p13.33)(chr10:g.89717443::chr12:g.379839)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0023910-T14-IM6	SOMATIC	FLT4	FLT4	12	5	97517976	180046684	IGR: 217Kb before NEDD1(+)	Exon 18 of FLT4(-)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;12)(q35.3;q23.1)(chr5:g.180046684::chr12:g.97517976)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	6	0	6
P-0046474-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48575163	61422486	Exon 3 of SMAD4(+)	5-UTR of SERPINB7(+):27Kb before coding start	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.357:SMAD4_chr18:g.61422486inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	12847323	NA	0	11	10	12
P-0046689-T01-IM6	SOMATIC	BAP1	BAP1	17	3	42111278	52439384	Promoter of LSM12(-):724bp from tx start	Intron of BAP1(-):74bp before exon 11	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;17)(p21.1;q21.31)(chr3:g.52439384::chr17:g.42111278)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	10	35
P-0046693-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683940	128656732	Intron of EWSR1(+):654bp before exon 9	Intron of FLI1(+):5Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128656732::chr22:g.29683940)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	16	0	14
P-0046711-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120508977	120510140	Intron of NOTCH2(-):21bp after exon 9	Exon 8 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.1369_c.1567+22inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1163	NA	0	18	10	29
P-0046713-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	11	7976987	65317075	Exon 13 of ALOX12B(-)	Intron of LTBP3(-):2Kb after exon 11	GRCh37	TRANSLOCATION	ALOX12B (NM_001139) rearrangement: t(11;17)(q13.1;p13.1)(chr11:g.65317075::chr17:g.7976987)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	5	10	11
P-0046713-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874989	42870458	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):342bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-342:TMPRSS2_c.40-57445:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2995469	NA	0	7	10	8
P-0046736-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39818120	42870670	Intron of ERG(-):576bp before exon 2	Intron of TMPRSS2(-):554bp before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-576:ERG_c.56-554:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3052550	NA	0	14	10	12
P-0046736-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42863592	42874116	Intron of TMPRSS2(-):2Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-4000_c.350-2072inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10524	NA	0	12	10	12
P-0022396-T02-IM6	SOMATIC	NTRK2	NTRK2	9	9	87477298	115882282	Intron of NTRK2(+):1Kb after exon 15	Promoter of FAM225A(+):7Kb from tx start	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.1444+1296:NTRK2_chr9:g.115882282del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NTRK2:FAM225A}	28404984	NA	0	36	10	39
P-0026710-T02-IM6	SOMATIC	HOXB13	HOXB13	17	17	46804603	48898867	Intron of HOXB13(-):198bp before exon 2	IGR: 14Kb before WFIKKN2(+)	GRCh37	DELETION	HOXB13 (NM_006361) rearrangement: c.602-198:HOXB13_chr17:g.48898867del	PRECISE		MANUAL_OK	3to5	-	2094264	NA	0	12	9	12
P-0026710-T02-IM6	SOMATIC	ASXL1	TBCD	20	17	31023295	80876983	Exon 12 of ASXL1(+)	Intron of TBCD(+):1Kb before exon 24	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) - TBCD (NM_005993) rearrangement: t(17;20)(q25.3;q11.21)(chr17:g.80876983::chr20:g.31023295)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ASXL1:TBCD}	0	NA	0	40	10	40
P-0033566-T02-IM6	SOMATIC	CD74	PDE6A	5	5	149260436	149784884	Intron of PDE6A(-):3Kb after exon 17	Intron of CD74(-):141bp before exon 5	GRCh37	DELETION	CD74 (NM_001025159) - PDE6A (NM_000440) rearrangement: c.442-141:CD74_c.2135+2556:PDE6Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:PDE6A}	524448	NA	0	433	10	1635
P-0044109-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89649472	89653982	Intron of PTEN(+):4Kb before exon 2	Intron of PTEN(+):116bp after exon 2	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.80-4310_c.164+116inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4510	NA	0	24	10	23
P-0046366-T01-IM6	SOMATIC	NCOR1	NCOR1	17	13	15968666	110777086	Intron of NCOR1(-):132bp after exon 33	IGR: 24Kb before COL4A1(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(13;17)(q34;p12)(chr13:g.110777086::chr17:g.15968666)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	8	8
P-0046538-T02-IM6	SOMATIC	RB1	RB1	13	13	49030451	49032144	Exon 19 of RB1(+)	Intron of RB1(+):2Kb after exon 19	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1926_c.1960+1659del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1693	NA	0	83	10	86
P-0046660-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48652258	48664112	Exon 6 of GATA1(+)	Intron of HDAC6(+):34bp after exon 6	GRCh37	INVERSION	GATA1 (NM_002049) rearrangement: c.929:GATA1_chrX:g.48664112inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11854	NA	0	12	10	12
P-0046673-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39706410	39710777	Intron of TOP1(+):133bp after exon 5	Intron of TOP1(+):897bp after exon 7	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.335+133_c.507+897del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	4367	NA	0	6	10	6
P-0046675-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37448713	37671717	Intron of FBXL20(-):5Kb after exon 6	Intron of CDK12(+):266bp before exon 9	GRCh37	INVERSION	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.398+4667:FBXL20_c.2769-267:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FBXL20:CDK12}	223004	NA	0	181	10	209
P-0046676-T01-IM6	SOMATIC	CARM1	CARM1	19	19	11019915	11085632	Intron of CARM1(+):32bp after exon 4	5-UTR of SMARCA4(+):9Kb before coding start	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: c.558+32:CARM1_chr19:g.11085632del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CARM1:SMARCA4}	65717	NA	0	40	10	43
P-0046720-T01-IM6	SOMATIC	EML4	ALK	2	2	29446669	42528533	Intron of ALK(-):275bp before exon 20	Intron of EML4(+):1bp after exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1641+1:EML4_c.3173-275:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EML4:ALK}	13081864	NA	0	16	10	16
P-0046725-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	40408262	44911144	IGR: 32Kb before ATP6AP2(+)	Intron of KDM6A(+):97bp after exon 9	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.748+97:KDM6A_chrX:g.40408262inv	PRECISE		MANUAL_OK	3to3	-	4502882	NA	0	22	10	22
P-0046726-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316588	43610987	Intron of KIF5B(-):767bp after exon 15	Intron of RET(+):803bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+768:KIF5B_c.2136+803:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294399	NA	0	55	10	59
P-0046755-T01-IM6	SOMATIC	RAD52	RAD52	12	12	1039377	20234604	Intron of RAD52(-):67bp before exon 4	5-UTR of LOC100506393(+):17Kb before coding start	GRCh37	INVERSION	RAD52 (NM_134424) rearrangement: c.187-67:RAD52_chr12:g.20234604inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LOC100506393:RAD52}	19195227	NA	0	73	10	69
P-0046757-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10244496	18537515	Intron of DNMT1(-):119bp before exon 40	Intron of SSBP4(+):645bp before exon 2	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4817-119:DNMT1_chr19:g.18537515del	PRECISE		MANUAL_OK	3to5	-	8293019	NA	0	25	10	27
P-0046758-T01-IM6	SOMATIC	FGFR3	FGFR3	15	4	40834741	1807488	Intron of C15orf57(-):10Kb before exon 4	Exon 13 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;15)(p16.3;q15.1)(chr4:g.1807488::chr15:g.40834741)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	10	10	11
P-0046758-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1924897	1940254	Intron of WHSC1(+):5Kb after exon 5	Exon 8 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1410+4547_c.1751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15357	NA	0	25	10	26
P-0046775-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42864232	42867125	Intron of TMPRSS2(-):2Kb after exon 3	Intron of TMPRSS2(-):620bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-620_c.349+2051del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2893	NA	0	8	10	9
P-0046777-T01-IM6	SOMATIC	IRS2	IRS2	13	13	110434299	110441644	Intron of IRS2(-):89bp after exon 1	Promoter of IRS2(-):35Kb from tx start	GRCh37	DUPLICATION	IRS2 (NM_003749) rearrangement: c.4012+90:IRS2_chr13:g.110441644dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	7345	NA	0	4	10	4
P-0046786-T01-IM6	SOMATIC	RAD50	RAD50	5	5	131976497	131977870	Exon 24 of RAD50(+)	Exon 25 of RAD50(+)	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.3752_c.3753del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1373	NA	0	17	10	20
P-0046790-T01-IM6	SOMATIC	RET	UXS1	10	2	43600430	106728260	Exon 4 of RET(+)	Intron of UXS1(-):841bp after exon 10	GRCh37	TRANSLOCATION	RET (NM_020975) - UXS1 (NM_001253875) rearrangement: t(2;10)(q12.2;q11.21)(chr2:g.106728260::chr10:g.43600430)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RET:UXS1}	0	NA	0	5	10	5
P-0046790-T01-IM6	SOMATIC	ERBB2	CDK12	17	17	37640037	37863601	Intron of CDK12(+):7Kb before exon 3	Intron of ERBB2(+):207bp after exon 2	GRCh37	DUPLICATION	ERBB2 (NM_004448) - CDK12 (NM_016507) rearrangement: c.225+207:ERBB2_c.1932-6773:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERBB2:CDK12}	223564	NA	0	8	10	8
P-0046793-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63554036	63555989	Exon 2 of AXIN2(-)	5-UTR of AXIN2(-):30Kb before coding start	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.703:AXIN2_chr17:g.63555989del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1953	NA	0	37	10	38
P-0046798-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871048	42877051	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2826:TMPRSS2_c.40-53504:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3006003	NA	0	5	0	5
P-0046837-T01-IM6	SOMATIC	FGFR3	FGFR3	11	4	2505245	1807338	Intron of KCNQ1(+):39Kb after exon 1	Exon 12 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;11)(p16.3;p15.5)(chr4:g.1807338::chr11:g.2505245)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	7
P-0046837-T01-IM6	SOMATIC	CREBBP	CREBBP	16	3	3900582	50188271	Exon 2 of CREBBP(-)	IGR: 5Kb before SEMA3F(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(3;16)(p21.31;p13.3)(chr3:g.50188271::chr16:g.3900582)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0046838-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39835864	42870435	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):319bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-319:TMPRSS2_c.19-18320:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3034571	NA	0	69	10	71
P-0046841-T01-IM6	SOMATIC	BARD1	BARD1	2	2	180229517	215645616	IGR: 77Kb before ZNF385B(-)	Exon 4 of BARD1(-)	GRCh37	INVERSION	BARD1 (NM_000465) rearrangement: c.982:BARD1_chr2:g.180229517inv	PRECISE		MANUAL_OK	3to3	-	35416099	NA	0	60	10	73
P-0046656-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117746673	121329157	Intron of ROS1(-):23bp after exon 1	IGR: 71Kb before TBC1D32(-)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.123+24:ROS1_chr6:g.121329157inv	PRECISE		MANUAL_OK	5to5	-	3582484	NA	0	10	10	11
P-0046665-T01-IM6	SOMATIC	BBC3	BBC3	19	19	47729232	47731563	Intron of BBC3(-):588bp after exon 3	Exon 2 of BBC3(-)	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: c.229_c.568+589del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2331	NA	0	13	10	13
P-0121435-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76909487	77030840	Intron of ATRX(-):100bp after exon 14	Intron of ATRX(-):11Kb after exon 1	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.20+10628_c.4317+101inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	121353	NA	0	10	10	10
P-0046796-T01-IM6	SOMATIC	ERBB2	IKZF3	17	17	37871944	37959291	Intron of ERBB2(+):48bp before exon 12	Intron of IKZF3(-):10Kb before exon 4	GRCh37	INVERSION	ERBB2 (NM_004448) - IKZF3 (NM_012481) rearrangement: c.1314-49:ERBB2_c.164-10105:IKZF3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ERBB2:IKZF3}	87347	NA	0	8	10	7
P-0046856-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114710846	114979136	Intron of TCF7L2(+):119bp before exon 2	IGR: 269Kb before TCF7L2(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.190-120:TCF7L2_chr10:g.114979136del	PRECISE		MANUAL_OK	3to5	-	268290	NA	0	9	10	9
P-0046857-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111745459	111886266	Intron of ACOXL(+):665bp after exon 13	Intron of BCL2L11(+):5Kb after exon 2	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.1169+665:ACOXL_c.394+4550:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ACOXL:BCL2L11}	140807	NA	0	57	10	59
P-0017367-T02-IM6	SOMATIC	PALB2	PALB2	16	16	23576992	23647452	Intron of UBFD1(+):1Kb before exon 6	Exon 4 of PALB2(-)	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.415:PALB2_chr16:g.23576992del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	70460	NA	0	57	10	59
P-0044707-T03-IM6	SOMATIC	RTEL1	CDH4	20	20	60150175	62305671	Intron of CDH4(+):76Kb after exon 1	Intron of RTEL1(+):225bp after exon 10	GRCh37	DUPLICATION	RTEL1 (NM_032957) - CDH4 (NM_001794) rearrangement: c.991+225:RTEL1_c.170-168444:CDH4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RTEL1:CDH4}	2155496	NA	0	27	10	28
P-0046864-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41242948	41244604	Intron of BRCA1(-):12bp after exon 11	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.2944_c.4185+13inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1656	NA	0	2	7	2
P-0046865-T01-IM6	SOMATIC	TP53	TP53	17	17	7576906	7584783	Exon 9 of TP53(-)	5-UTR of TP53(-):12Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.940:TP53_chr17:g.7584783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7877	NA	0	23	10	27
P-0046870-T01-IM6	SOMATIC	RAC1	RAC1	7	7	6429807	6431621	Intron of RAC1(+):2Kb before exon 3	Exon 3 of RAC1(+)	GRCh37	DELETION	RAC1 (NM_018890) rearrangement: c.108-1748_c.174del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1814	NA	0	5	8	6
P-0046871-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44942832	44975327	Exon 23 of KDM6A(+)	IGR: 32Kb before CXorf36(-)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.3412:KDM6A_chrX:g.44975327del	PRECISE		MANUAL_OK	3to5	-	32495	NA	0	127	10	138
P-0046875-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226380	2227558	Exon 27 of DOT1L(+)	Intron of DOT1L(+):432bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.3860_c.4606+432inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1178	NA	0	3	0	3
P-0046880-T01-IM6	SOMATIC	POLE	POLE	12	12	133218467	133273783	Intron of POLE(-):30bp before exon 39	Intron of PXMP2(+):1Kb after exon 3	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.5174-30:POLE_chr12:g.133273783del	PRECISE		MANUAL_OK	3to5	-	55316	NA	0	8	10	8
P-0046881-T01-IM6	SOMATIC	STAT3	STAT3	17	7	40477132	151490268	Intron of STAT3(-):53bp before exon 16	Intron of PRKAG2(-):7Kb before exon 2	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(7;17)(q36.1;q21.2)(chr7:g.151490268::chr17:g.40477132)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	112	10	110
P-0046881-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855402	42877358	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+2519:TMPRSS2_c.18+14885:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3021956	NA	0	194	10	210
P-0046884-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1639864	1646456	Intron of TCF3(-):6Kb after exon 2	Intron of TCF3(-):30bp before exon 2	GRCh37	DUPLICATION	TCF3 (NM_001136139) rearrangement: c.73-30_c.145+6490dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	6592	NA	0	94	10	99
P-0046887-T01-IM6	SOMATIC	POLE	POLE	12	12	133219844	133222893	Exon 35 of POLE(-)	Intron of POLE(-):2Kb before exon 33	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.4150-2330_c.4517inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3049	NA	0	75	10	96
P-0046904-T01-IM6	SOMATIC	WT1	EWSR1	22	11	29683099	32416991	Exon 8 of EWSR1(+)	Intron of WT1(-):811bp after exon 7	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) fusion: t(11;22)(p13;q12.2)(chr11:g.32416991::chr22:g.29683099)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WT1:EWSR1}	0	NA	0	59	10	74
P-0014496-T03-IM6	SOMATIC	AKT1	AKT1	14	14	99512393	105238750	IGR: 123Kb before BCL11B(-)	Exon 12 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: c.1212:AKT1_chr14:g.99512393del	PRECISE		MANUAL_OK	3to5	-	5726357	NA	0	33	10	34
P-0022184-T04-IM6	SOMATIC	EML4	ALK	2	2	29447035	42524042	Intron of ALK(-):641bp before exon 20	Intron of EML4(+):1Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1386:EML4_c.3173-641:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077007	NA	0	70	10	69
P-0022184-T04-IM6	SOMATIC	EP300	EP300	22	22	41573091	41578926	Exon 31 of EP300(+)	Promoter of EP300(+):90Kb from tx start	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.5376:EP300_chr22:g.41578926del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5835	NA	0	5	0	5
P-0022184-T04-IM6	SOMATIC	APC	APC	5	5	112173820	112177483	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.2529_c.6192del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3663	NA	0	22	0	23
P-0046489-T01-IM6	SOMATIC	HGF	HGF	22	7	34966766	81355058	IGR: 495Kb before ISX(+)	Intron of HGF(-):147bp after exon 9	GRCh37	TRANSLOCATION	HGF (NM_000601) rearrangement: t(7;22)(q21.11;q12.3)(chr7:g.81355058::chr22:g.34966766)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0046593-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	9844608	10260505	IGR: 24Kb before ZNF846(-)	Intron of DNMT1(-):23bp after exon 24	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.2333+24:DNMT1_chr19:g.9844608del	IMPPRECISE		MANUAL_OK	3to5	-	415897	NA	0	18	0	18
P-0046868-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33793292	41809503	Exon 1 of CEBPA(-)	Intron of HNRNPUL1(+):373bp before exon 13	GRCh37	DELETION	CEBPA (NM_004364) rearrangement: c.29:CEBPA_chr19:g.41809503del	PRECISE		MANUAL_OK	3to5	-	8016211	NA	0	31	10	36
P-0046906-T01-IM6	SOMATIC	SOCS1	SOCS1	16	16	762649	11349207	Promoter of METRN(+):3Kb from tx start	Exon 2 of SOCS1(-)	GRCh37	INVERSION	SOCS1 (NM_003745) rearrangement: c.129:SOCS1_chr16:g.762649inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SOCS1:METRN}	10586558	NA	0	162	10	206
P-0046910-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266026	41266613	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.23_c.410del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	587	NA	0	53	10	56
P-0046929-T01-IM6	SOMATIC	NFE2L2	NFE2L2	3	2	80873212	178098804	IGR: 666Kb before GBE1(-)	Exon 2 of NFE2L2(-)	GRCh37	TRANSLOCATION	NFE2L2 (NM_006164) rearrangement: t(2;3)(q31.2;p12.2)(chr2:g.178098804::chr3:g.80873212)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	216	10	251
P-0046931-T02-IM6	SOMATIC	AURKA	AURKA	20	20	54729689	54963098	IGR: 94Kb before MC3R(+)	Intron of AURKA(-):113bp after exon 2	GRCh37	DELETION	AURKA (NM_003600) rearrangement: c.42+114:AURKA_chr20:g.54729689del	IMPPRECISE		MANUAL_OK	3to5	-	233409	NA	0	16	0	16
P-0046951-T01-IM6	SOMATIC	BCOR	IL1RAPL2	X	X	39931553	104284346	Intron of BCOR(-):48bp after exon 4	Intron of IL1RAPL2(+):156Kb before exon 3	GRCh37	INVERSION	BCOR (NM_001123385) - IL1RAPL2 (NM_017416) rearrangement: c.2997+49:BCOR_c.83-155811:IL1RAPL2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {BCOR:IL1RAPL2}	64352793	NA	0	24	10	41
P-0046952-T01-IM6	SOMATIC	AKT3	AKT3	1	1	243725181	243727070	Intron of AKT3(-):2Kb after exon 9	Exon 9 of AKT3(-)	GRCh37	DELETION	AKT3 (NM_005465) rearrangement: c.900_c.948+1841del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1889	NA	0	8	10	9
P-0046957-T01-IM6	SOMATIC	KMT2B	KMT2B	19	12	36229383	64138499	Exon 37 of KMT2B(+)	IGR: 35Kb before TMEM5(+)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(12;19)(q14.2;q13.12)(chr12:g.64138499::chr19:g.36229383)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	13
P-0017386-T04-IM6	SOMATIC	STK40	STK40	1	1	36809046	121485036	Exon 11 of STK40(-)	IGR: 224Kb before EMBP1(+)	GRCh37	DELETION	STK40 (NM_032017) rearrangement: c.1008:STK40_chr1:g.121485036del	PRECISE		MANUAL_OK	3to5	-	84675990	NA	0	12	10	55
P-0017386-T04-IM6	SOMATIC	MGA	MGA	15	15	41999903	42016392	Intron of MGA(+):22bp before exon 6	Intron of MGA(+):3Kb before exon 10	GRCh37	DUPLICATION	MGA (NM_001164273) rearrangement: c.2189-23_c.3431-2986dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	16489	NA	0	63	10	63
P-0039285-T02-IM6	SOMATIC	DUSP4	DUSP4	8	8	29044779	29196181	Intron of KIF13B(-):790bp before exon 6	Intron of DUSP4(-):163bp before exon 3	GRCh37	INVERSION	DUSP4 (NM_001394) rearrangement: c.580-163:DUSP4_chr8:g.29044779inv	PRECISE		MANUAL_OK	3to3	-	151402	NA	0	6	10	6
P-0047115-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29685486	51201743	Intron of EWSR1(+):711bp after exon 9	Intron of ATF1(+):1Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51201743::chr22:g.29685486)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	43	0	51
P-0022075-T03-IM6	SOMATIC	CBL	CBL	11	11	119140599	119144609	Intron of CBL(+):2Kb before exon 3	Exon 4 of CBL(+)	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.444-1846_c.622del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4010	NA	0	6	10	8
P-0043094-T02-IM6	SOMATIC	FOXO1	FOXO1	13	13	41239642	49932326	Intron of FOXO1(-):77bp after exon 1	Intron of CAB39L(-):2Kb after exon 4	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement: c.630+78:FOXO1_chr13:g.49932326inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	8692684	NA	0	5	0	5
P-0046940-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16199925	16265793	Intron of SPEN(+):294bp after exon 2	Exon 15 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.404+294_c.10866del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	65868	NA	0	43	10	45
P-0046940-T01-IM6	SOMATIC	ARID2	SIPA1L3	19	12	38692821	46123998	Intron of SIPA1L3(+):184bp after exon 20	Intron of ARID2(+):78bp after exon 2	GRCh37	TRANSLOCATION	ARID2 (NM_152641) - SIPA1L3 (NM_015073) rearrangement: t(12;19)(q12;q13.13)(chr12:g.46123998::chr19:g.38692821)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARID2:SIPA1L3}	0	NA	0	26	10	28
P-0046943-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57858665	116180623	Intron of GLI1(+):14bp after exon 4	IGR: 216Kb before MED13L(-)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.389+14:GLI1_chr12:g.116180623inv	PRECISE		MANUAL_OK	3to3	-	58321958	NA	0	14	10	14
P-0046943-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	9	15299695	95511808	Intron of NOTCH3(-):104bp after exon 8	Intron of BICD2(-):15Kb after exon 1	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(9;19)(q22.31;p13.12)(chr9:g.95511808::chr19:g.15299695)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	12	10	12
P-0046943-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40030286	42879400	3-UTR of ERG(-):3Kb after coding stop	Intron of TMPRSS2(-):476bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+477:TMPRSS2_chr21:g.40030286del	PRECISE		MANUAL_OK	3to5	-	2849114	NA	0	55	10	55
P-0046945-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187558134	187625607	Intron of FAT1(-):66bp before exon 5	Intron of FAT1(-):2Kb after exon 2	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.3265+2110_c.3643-66inv	PRECISE		MANUAL_OK	3to3	-	67473	NA	0	12	10	12
P-0046964-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12013156	12088048	Intron of ETV6(+):7Kb after exon 4	IGR: 136Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+6661:ETV6_chr12:g.12088048del	PRECISE		MANUAL_OK	3to5	-	74892	NA	0	30	10	30
P-0046985-T01-IM6	SOMATIC	PAWR	ERBB3	12	12	56494894	80056254	Exon 27 of ERBB3(+)	Intron of PAWR(-):27Kb after exon 2	GRCh37	INVERSION	PAWR (NM_002583) - ERBB3 (NM_001982) rearrangement: c.516+27255:PAWR_c.3251:ERBB3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PAWR:ERBB3}	23561360	NA	0	14	10	17
P-0046988-T01-IM6	SOMATIC	TERT	TERT	5	5	1260339	1271283	Intron of TERT(-):249bp after exon 12	Exon 8 of TERT(-)	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.2419_c.2970+250inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	10944	NA	0	3	0	3
P-0047008-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39937324	42868342	Intron of ERG(-):10Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+1704:TMPRSS2_c.39+10262:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2931018	NA	0	13	10	14
P-0047009-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9776747	9779924	Intron of PIK3CD(+):70bp after exon 6	Intron of PIK3CD(+):54bp before exon 10	GRCh37	DELETION	PIK3CD (NM_005026) rearrangement: c.780+70_c.1243-55del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	3177	NA	0	3	8	3
P-0047009-T01-IM6	SOMATIC	ARID1A	SLC17A8	12	1	100779582	27100005	Intron of SLC17A8(+):5Kb after exon 2	Intron of ARID1A(+):18bp after exon 15	GRCh37	TRANSLOCATION	ARID1A (NM_006015) - SLC17A8 (NM_139319) rearrangement: t(1;12)(p36.11;q23.1)(chr1:g.27100005::chr12:g.100779582)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARID1A:SLC17A8}	0	NA	0	5	8	5
P-0047012-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28959081	29026790	Exon 14 of FLT1(-)	Intron of FLT1(-):14Kb after exon 3	GRCh37	INVERSION	FLT1 (NM_002019) rearrangement: c.388+14250_c.2057inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	67709	NA	0	25	10	26
P-0047047-T01-IM6	SOMATIC	ERBB3	FBXO21	12	12	56495508	117597394	Exon 28 of ERBB3(+)	Intron of FBXO21(-):2Kb before exon 10	GRCh37	INVERSION	ERBB3 (NM_001982) - FBXO21 (NM_033624) rearrangement: c.3698:ERBB3_c.1327-1505:FBXO21inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERBB3:FBXO21}	61101886	NA	0	4	6	4
P-0047080-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36217045	57191978	Intron of KMT2B(+):91bp before exon 14	IGR: 18Kb before ZNF835(-)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.3886-92:KMT2B_chr19:g.57191978inv	PRECISE		MANUAL_OK	5to5	-	20974933	NA	0	70	10	100
P-0047084-T01-IM6	SOMATIC	AXL	AXL	19	19	41440654	41744870	5-UTR of CYP2B7P(+):16Kb before coding start	Intron of AXL(+):198bp before exon 9	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.1135-199:AXL_chr19:g.41440654del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CYP2B7P:AXL}	304216	NA	0	16	10	16
P-0047084-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55164874	55222315	Intron of EGFR(+):45Kb before exon 2	Intron of EGFR(+):470bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-45105_c.889+470del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	57441	NA	0	432	0	1999
P-0047084-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55269043	55272624	Exon 25 of EGFR(+)	Intron of EGFR(+):324bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3109_c.3272-325del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3581	NA	0	16	10	16
P-0047086-T01-IM6	SOMATIC	FGFR1	TACC1	8	8	38271378	38691580	Intron of FGFR1(-):56bp before exon 19	Intron of TACC1(+):2Kb before exon 7	GRCh37	INVERSION	FGFR1 (NM_001174067) - TACC1 (NM_006283) fusion: c.2386-56:FGFR1_c.1714-2100:TACC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR1:TACC1}	420202	NA	0	32	10	45
P-0047088-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31023129	32439454	Exon 12 of ASXL1(+)	Intron of CHMP4B(+):428bp before exon 4	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.2614:ASXL1_chr20:g.32439454inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1416325	NA	0	83	10	83
P-0047105-T01-IM6	SOMATIC	FANCA	FANCA	16	12	89845139	45878043	Intron of FANCA(-):69bp after exon 20	IGR: 192Kb before ANO6(+)	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(12;16)(q12;q24.3)(chr12:g.45878043::chr16:g.89845139)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0047124-T01-IM6	SOMATIC	EP300	EP300	22	22	41573173	45672535	Exon 31 of EP300(+)	IGR: 8Kb before UPK3A(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.5458:EP300_chr22:g.45672535del	PRECISE		MANUAL_OK	3to5	-	4099362	NA	0	14	10	14
P-0018869-T03-IM6	SOMATIC	FGFR2	ABLIM1	10	10	116263881	123242601	Intron of ABLIM1(-):12Kb before exon 7	Intron of FGFR2(-):610bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - ABLIM1 (NM_002313) fusion: c.2301+611:FGFR2_c.895-12244:ABLIM1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:ABLIM1}	6978720	NA	0	8	0	8
P-0045498-T02-IM6	SOMATIC	TP53	TP53	17	17	7576262	7578410	Intron of TP53(-):590bp after exon 9	Exon 5 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.520_c.993+591del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2148	NA	0	15	10	19
P-0046950-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	1	35871855	22271508	Exon 5 of NFKBIA(-)	IGR: 32Kb before CELA3B(+)	GRCh37	TRANSLOCATION	NFKBIA (NM_020529) rearrangement: t(1;14)(p36.12;q13.2)(chr1:g.22271508::chr14:g.35871855)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	20
P-0046969-T01-IM6	SOMATIC	NRAS	NRAS	19	1	49258664	115256393	Promoter of FGF21(+):679bp from tx start	Intron of NRAS(-):27bp after exon 3	GRCh37	TRANSLOCATION	NRAS (NM_002524) rearrangement: t(1;19)(p13.2;q13.33)(chr1:g.115256393::chr19:g.49258664)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {NRAS:FGF21}	0	NA	0	5	0	6
P-0046974-T01-IM6	SOMATIC	PIK3R2	MRI1	19	19	13880962	18274231	Intron of MRI1(+):1Kb after exon 5	Intron of PIK3R2(+):33bp after exon 11	GRCh37	DUPLICATION	PIK3R2 (NM_005027) - MRI1 (NM_001031727) rearrangement: c.1416+33:PIK3R2_c.949+1100:MRI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PIK3R2:MRI1}	4393269	NA	0	40	10	43
P-0046974-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57752983	113215171	Intron of PLK2(-):24bp after exon 7	IGR: 366Kb before YTHDC2(+)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.1008+25:PLK2_chr5:g.113215171inv	PRECISE		MANUAL_OK	3to3	-	55462188	NA	0	28	10	31
P-0046974-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176721402	176740468	Exon 23 of NSD1(+)	Promoter of MXD3(-):6Kb from tx start	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.7033:NSD1_chr5:g.176740468del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	19066	NA	0	21	10	26
P-0047135-T01-IM6	SOMATIC	MKRN1	BRAF	7	7	140157638	140492510	Intron of MKRN1(-):972bp before exon 5	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	MKRN1 (NM_013446) - BRAF (NM_004333) fusion: c.772-972:MKRN1_c.1140+1598:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MKRN1:BRAF}	334872	NA	0	66	10	69
P-0047144-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611888	61657033	Intron of RET(+):143bp before exon 12	Intron of CCDC6(-):9Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+8847:CCDC6_c.2137-144:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18045145	NA	1	20	10	49
P-0047149-T01-IM6	SOMATIC	NF1	NF1	17	17	29630162	29657552	Intron of NF1(+):23Kb before exon 37	Intron of NF1(+):36bp after exon 39	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4836-22676_c.5812+36dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	27390	NA	0	9	0	9
P-0047149-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2163961	2211643	Promoter of DOT1L(+):186bp from tx start	Intron of DOT1L(+):106bp before exon 16	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.1466-107:DOT1L_chr19:g.2163961del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	47682	NA	0	3	5	3
P-0047152-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63534365	63760602	Exon 5 of AXIN2(-)	Intron of CEP112(-):14Kb before exon 20	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.1156:AXIN2_chr17:g.63760602inv	PRECISE		MANUAL_OK	3to3	-	226237	NA	0	2	5	3
P-0047156-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27063963	27100051	Intron of ARID1A(+):5Kb after exon 4	Intron of ARID1A(+):19bp before exon 16	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1920+4680_c.3867-20dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	36088	NA	0	43	10	45
P-0047202-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10599096	10600133	Intron of KEAP1(-):771bp after exon 5	Intron of KEAP1(-):89bp before exon 5	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1532-89_c.1708+772del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1037	NA	0	12	0	18
P-0047203-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	45466650	49435999	IGR: 10Kb before RACGAP1P(-)	Exon 28 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.5982:KMT2D_chr12:g.45466650inv	IMPPRECISE		MANUAL_OK	3to3	-	3969349	NA	0	24	0	24
P-0047206-T01-IM6	SOMATIC	ARAF	SCML2	X	X	18328018	47422509	Intron of SCML2(-):5Kb before exon 7	Intron of ARAF(+):47bp after exon 2	GRCh37	INVERSION	ARAF (NM_001654) - SCML2 (NM_006089) rearrangement: c.96+47:ARAF_c.487-4683:SCML2inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ARAF:SCML2}	29094491	NA	0	5	0	5
P-0034561-T01-IM6	SOMATIC	MGA	MGA	15	14	42049853	74523162	Intron of MGA(+):132bp before exon 19	Intron of CCDC176(+):446bp before exon 10	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(14;15)(q24.3;q15.1)(chr14:g.74523162::chr15:g.42049853)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CCDC176:MGA}	0	NA	0	11	10	11
P-0046331-T01-IM6	SOMATIC	KDM5A	KDM5A	12	9	465623	37548328	Exon 6 of KDM5A(-)	5-UTR of FBXO10(-):36Kb before coding start	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(9;12)(p13.2;p13.33)(chr9:g.37548328::chr12:g.465623)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	30	10	41
P-0046331-T01-IM6	SOMATIC	PLCG2	PLCG2	16	14	81904561	92264481	Intron of PLCG2(+):21bp after exon 7	Intron of TC2N(-):161bp after exon 7	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) rearrangement: t(14;16)(q32.12;q23.3)(chr14:g.92264481::chr16:g.81904561)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	6	0	6
P-0046331-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3708486	3788808	Intron of TRAP1(-):255bp before exon 17	Intron of CREBBP(-):135bp before exon 26	GRCh37	DUPLICATION	TRAP1 (NM_016292) - CREBBP (NM_004380) rearrangement: c.2014-255:TRAP1_c.4281-135:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TRAP1:CREBBP}	80322	NA	0	13	10	14
P-0046331-T01-IM6	SOMATIC	ATR	ATR	3	3	125082265	142281763	5-UTR of ZNF148(-):131Kb before coding start	Exon 4 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.481:ATR_chr3:g.125082265del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ATR:ZNF148}	17199498	NA	0	40	10	41
P-0047139-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115267954	115268832	Exon 16 of CSDE1(-)	Exon 15 of CSDE1(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.1778_c.1779del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	878	NA	0	6	10	6
P-0047139-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193002339	193119374	Intron of UCHL5(-):4Kb before exon 4	Intron of CDC73(+):59bp before exon 9	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.829-60:CDC73_chr1:g.193002339del	PRECISE		MANUAL_OK	3to5	-	117035	NA	0	3	5	5
P-0047211-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868509	42875942	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+3935:TMPRSS2_c.18+1778:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007433	NA	0	56	10	58
P-0047213-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46242580	46244326	Intron of ARID2(+):38bp before exon 13	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.1581-39_c.2420del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1746	NA	0	11	10	11
P-0047257-T01-IM6	SOMATIC	NRG1	NOTCH2	8	1	32443239	120465633	Intron of NRG1(+):10Kb before exon 2	Intron of NOTCH2(-):232bp before exon 27	GRCh37	TRANSLOCATION	NRG1 (NM_013956) - NOTCH2 (NM_024408) rearrangement: t(1;8)(p12;p12)(chr1:g.120465633::chr8:g.32443239)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NRG1:NOTCH2}	0	NA	0	7	9	5
P-0047256-T01-IM6	SOMATIC	NOTCH4	NOTCH4	7	6	42222976	32165389	Intron of GLI3(-):35Kb before exon 3	Intron of NOTCH4(-):18bp before exon 27	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;7)(p21.32;p14.1)(chr6:g.32165389::chr7:g.42222976)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	15	10	15
P-0047313-T01-IM6	SOMATIC	JAK3	JAK3	19	8	17945774	110031275	Exon 16 of JAK3(-)	IGR: 68Kb before TRHR(+)	GRCh37	TRANSLOCATION	JAK3 (NM_000215) rearrangement: t(8;19)(q23.1;p13.11)(chr8:g.110031275::chr19:g.17945774)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	19	10	26
P-0047338-T01-IM6	SOMATIC	NUF2	NUF2	1	1	163266615	163306271	5-UTR of RGS5(-):149Kb before coding start	Intron of NUF2(+):269bp before exon 6	GRCh37	INVERSION	NUF2 (NM_031423) rearrangement: c.338-270:NUF2_chr1:g.163266615inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {RGS5:NUF2}	39656	NA	0	13	10	13
P-0047340-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41246430	41567534	Exon 10 of BRCA1(-)	Intron of DHX8(+):224bp before exon 3	GRCh37	DUPLICATION	BRCA1 (NM_007294) rearrangement: c.1118:BRCA1_chr17:g.41567534dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	321104	NA	0	18	9	18
P-0047340-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2106386	2221796	Intron of AP3D1(-):2Kb after exon 29	Intron of DOT1L(+):178bp before exon 24	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.2807-179:DOT1L_chr19:g.2106386del	PRECISE		MANUAL_OK	3to5	-	115410	NA	0	12	9	12
P-0047343-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27037459	27089833	Intron of ARID1A(+):13Kb after exon 1	Intron of ARID1A(+):57bp after exon 8	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.1137+13428_c.2732+57dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : out of frame	52374	NA	0	25	10	25
P-0044466-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1737299	1808773	Intron of TACC3(+):158bp before exon 8	Intron of FGFR3(+):69bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-70:FGFR3_c.1645-159:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71474	NA	0	16	10	19
P-0047102-T01-IM6	SOMATIC	EZH1	EZH1	17	6	40870395	140038690	Intron of EZH1(-):76bp after exon 9	IGR: 54Kb before LOC100132735(+)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(6;17)(q24.1;q21.2)(chr6:g.140038690::chr17:g.40870395)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	28	10	28
P-0047287-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39859217	42867215	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):710bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-710:TMPRSS2_c.18+11070:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007998	NA	0	14	10	14
P-0047288-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59760971	59762551	Exon 20 of BRIP1(-)	Intron of BRIP1(-):645bp after exon 19	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.2905+646_c.3436del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1580	NA	0	2	9	2
P-0047288-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874515	42877016	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2861:TMPRSS2_c.40-56971:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3002501	NA	0	18	0	20
P-0047304-T01-IM6	SOMATIC	RB1	CYSLTR2	13	13	49046439	49281837	Intron of RB1(+):1Kb before exon 24	Exon 1 of CYSLTR2(+)	GRCh37	DELETION	RB1 (NM_000321) - CYSLTR2 (NM_020377) rearrangement: c.2490-1057:RB1_c.884:CYSLTR2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RB1:CYSLTR2}	235398	NA	0	76	10	79
P-0047304-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	27694846	42866885	IGR: 144Kb before CYYR1(-)	Intron of TMPRSS2(-):380bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.127-380:TMPRSS2_chr21:g.27694846inv	PRECISE		MANUAL_OK	5to5	-	15172039	NA	0	8	10	8
P-0047306-T01-IM6	SOMATIC	MET	MET	7	7	116434139	116435750	Intron of MET(+):2Kb before exon 20	Exon 20 of MET(+)	GRCh37	INVERSION	MET (NM_000245) rearrangement: c.3799-1570_c.3840inv	PRECISE		MANUAL_OK	5to5	-	1611	NA	0	43	10	47
P-0047312-T01-IM6	SOMATIC	POLE	POLE	16	12	8232845	133238352	IGR: 344Kb before TMEM114(-)	Intron of POLE(-):82bp before exon 24	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(12;16)(q24.33;p13.2)(chr12:g.133238352::chr16:g.8232845)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	5
P-0047314-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55197744	55222150	Intron of EGFR(+):12Kb before exon 2	Intron of EGFR(+):305bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-12235_c.889+305del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	24406	NA	0	200	10	1386
P-0047314-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55270058	55272572	Intron of EGFR(+):151bp before exon 27	Intron of EGFR(+):376bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3163-152_c.3272-377del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2514	NA	0	141	10	701
P-0047332-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	2	89357093	83471575	Exon 6 of ANKRD11(-)	IGR: 388Kb before LOC1720(+)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(2;16)(p11.2;q24.3)(chr2:g.83471575::chr16:g.89357093)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	22
P-0047355-T01-IM6	SOMATIC	EML4	ALK	2	2	29446609	42492796	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):925bp after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+925:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046187	NA	0	30	10	30
P-0047355-T02-IM6	SOMATIC	EML4	ALK	2	2	29446609	42492796	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):925bp after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+925:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046187	NA	0	42	10	41
P-0047356-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268316	55866602	Intron of EGFR(+):210bp after exon 24	Intron of SEPT14(-):3Kb before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion: c.2946+210:EGFR_c.1120-2817:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	598286	NA	0	69	10	74
P-0047358-T01-IM6	SOMATIC	MDC1	DNAH8	6	6	30681613	38786047	Exon 3 of MDC1(-)	Intron of DNAH8(+):3Kb after exon 26	GRCh37	INVERSION	MDC1 (NM_014641) - DNAH8 (NM_001206927) rearrangement: c.484:MDC1_c.3523+2614:DNAH8inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MDC1:DNAH8}	8104434	NA	0	20	10	20
P-0047359-T01-IM6	SOMATIC	MBIP	RET	14	10	36773155	43610084	Intron of MBIP(-):3Kb before exon 8	Exon 11 of RET(+)	GRCh37	TRANSLOCATION	MBIP (NM_016586) - RET (NM_020975) fusion: t(10;14)(q11.21;q13.3)(chr10:g.43610084::chr14:g.36773155)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MBIP:RET}	0	NA	0	8	10	9
P-0007343-T03-IM6	SOMATIC	INPPL1	INPPL1	11	4	71943348	113898703	Exon 14 of INPPL1(+)	Intron of ANK2(+):73Kb after exon 2	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(4;11)(q25;q13.4)(chr4:g.113898703::chr11:g.71943348)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {INPPL1:ANK2}	0	NA	0	111	10	132
P-0007343-T03-IM6	SOMATIC	TBX3	TBX3	19	12	13270583	115112036	IGR: 9Kb before IER2(+)	Exon 7 of TBX3(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(12;19)(q24.21;p13.2)(chr12:g.115112036::chr19:g.13270583)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	185	10	184
P-0007343-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882799	42869384	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):661bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+662:TMPRSS2_c.39+64787:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2986585	NA	0	100	10	107
P-0045387-T03-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15283703	15291836	Intron of NOTCH3(-):1Kb after exon 25	Exon 18 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2930_c.4736+1176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8133	NA	0	71	10	96
P-0047028-T02-IM6	SOMATIC	MAPK10	FAT1	4	4	87096359	187531025	Intron of MAPK10(-):16Kb before exon 4	Exon 15 of FAT1(-)	GRCh37	DUPLICATION	MAPK10 (NM_002753) - FAT1 (NM_005245) rearrangement: c.67-15739:MAPK10_c.9998:FAT1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAPK10:FAT1}	100434666	NA	0	21	0	22
P-0047115-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29685485	51201746	Intron of EWSR1(+):710bp after exon 9	Intron of ATF1(+):1Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51201746::chr22:g.29685485)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	100	10	123
P-0047174-T02-IM6	SOMATIC	PTPRT	PTPRT	20	20	40719406	40733284	Intron of PTPRT(-):5Kb before exon 29	Exon 26 of PTPRT(-)	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.3522_c.3904-4913del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13878	NA	0	8	10	8
P-0047290-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1808728	1809658	Intron of FGFR3(+):67bp after exon 17	3-UTR of FGFR3(+):14Kb after coding stop	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.2274+67:FGFR3_chr4:g.1809658inv	PRECISE		MANUAL_OK	3to3	-	930	NA	0	3	10	3
P-0047373-T01-IM6	SOMATIC	FGF19	FGF19	11	11	69281965	69518394	IGR: 18Kb before LINC01488(+)	Intron of FGF19(-):18bp after exon 1	GRCh37	INVERSION	FGF19 (NM_005117) rearrangement: c.232+19:FGF19_chr11:g.69281965inv	PRECISE		MANUAL_OK	5to5	-	236429	NA	0	16	10	22
P-0047373-T01-IM6	SOMATIC	GLI1	GLI1	22	12	25712668	57865113	Promoter of IGLL3P(+):2Kb from tx start	Exon 12 of GLI1(+)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(12;22)(q13.3;q11.23)(chr12:g.57865113::chr22:g.25712668)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {IGLL3P:GLI1}	0	NA	0	35	10	38
P-0047373-T01-IM6	SOMATIC	BRAF	BRAF	7	4	140485977	57666422	Intron of BRAF(-):1Kb after exon 9	IGR: 10Kb before SPINK2(-)	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(4;7)(q12;q34)(chr4:g.57666422::chr7:g.140485977)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	5	0	5
P-0047385-T01-IM6	SOMATIC	CBL	CBL	11	11	119148615	119153673	Intron of CBL(+):61bp after exon 7	Intron of CBL(+):2Kb before exon 10	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+61_c.1432-2006del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5058	NA	0	9	0	9
P-0047395-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12006673	12275489	Intron of ETV6(+):178bp after exon 4	Intron of LRP6(-):1Kb before exon 23	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+178:ETV6_chr12:g.12275489del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	268816	NA	0	54	10	56
P-0047433-T01-IM6	SOMATIC	RAD51C	RAD51C	17	17	56798033	56809751	Intron of RAD51C(+):73bp before exon 6	Intron of RAD51C(+):93bp before exon 8	GRCh37	DUPLICATION	RAD51C (NM_058216) rearrangement: c.838-74_c.966-94dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	11718	NA	0	9	7	9
P-0047433-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	41424405	41514390	Intron of PTPRT(-):4Kb before exon 3	Intron of PTPRT(-):56bp after exon 2	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.214+57_c.215-4299inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	89985	NA	0	13	10	13
P-0047433-T01-IM6	SOMATIC	HIST1H1C	HIST1H1C	6	6	26053411	26056407	Promoter of HIST1H1C(-):3Kb from tx start	Exon 1 of HIST1H1C(-)	GRCh37	DUPLICATION	HIST1H1C (NM_005319) rearrangement: c.250:HIST1H1C_chr6:g.26053411dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2996	NA	0	96	10	102
P-0047433-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139403318	139407938	Intron of NOTCH1(-):3bp after exon 19	Exon 14 of NOTCH1(-)	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.2259_c.3171+4dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4620	NA	0	379	10	434
P-0047438-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27099930	27100987	Exon 15 of ARID1A(+)	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3809_c.4269del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1057	NA	0	79	0	81
P-0047441-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52702576	52707279	Exon 4 of PBRM1(-)	Intron of PBRM1(-):5Kb before exon 4	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.237-4618_c.322del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4703	NA	0	3	5	3
P-0047450-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78935320	78937037	Intron of RPTOR(+):40bp after exon 31	Intron of RPTOR(+):180bp after exon 33	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.3692+40_c.3939+180del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1717	NA	0	188	10	204
P-0047465-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15271499	15393284	Exon 33 of NOTCH3(-)	Promoter of BRD4(-):45Kb from tx start	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.6940:NOTCH3_chr19:g.15393284del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BRD4:NOTCH3}	121785	NA	0	5	0	5
P-0047493-T01-IM6	SOMATIC	NSD1	NSD1	5	5	171600943	176720969	Intron of STK10(-):14Kb after exon 1	Exon 23 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.6600:NSD1_chr5:g.171600943del	PRECISE		MANUAL_OK	3to5	-	5120026	NA	0	15	10	15
P-0047502-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646405	149782474	Intron of ROS1(-):827bp before exon 34	Intron of CD74(-):209bp after exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782474::chr6:g.117646405)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	29	0	28
P-0047562-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68846159	68848154	Exon 8 of CDH1(+)	Intron of CDH1(+):756bp after exon 9	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.1130_c.1320+756del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1995	NA	0	8	10	9
P-0047565-T01-IM6	SOMATIC	HIST1H3D	HIST1H3D	6	6	26116722	26197395	IGR: 7Kb before HIST1H2BC(-)	Exon 2 of HIST1H3D(-)	GRCh37	DELETION	HIST1H3D (NM_003530) rearrangement: c.84:HIST1H3D_chr6:g.26116722del	PRECISE		MANUAL_OK	3to5	-	80673	NA	0	20	10	21
P-0040655-T02-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	106545779	147785722	Exon 11 of PIK3CG(+)	Intron of CNTNAP2(+):29Kb before exon 16	GRCh37	INVERSION	PIK3CG (NM_002649) rearrangement: c.3256:PIK3CG_chr7:g.147785722inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	41239943	NA	0	18	10	18
P-0040655-T02-IM6	SOMATIC	CTTNBP2	KMT2C	7	7	117502320	151947983	Intron of CTTNBP2(-):950bp before exon 2	Exon 12 of KMT2C(-)	GRCh37	DUPLICATION	CTTNBP2 (NM_033427) - KMT2C (NM_170606) rearrangement: c.82-950:CTTNBP2_c.1690:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CTTNBP2:KMT2C}	34445663	NA	0	6	6	6
P-0047504-T01-IM6	SOMATIC	FGFR2	ATAD1	10	10	89523437	123241680	Intron of ATAD1(-):4Kb after exon 8	Intron of FGFR2(-):2Kb after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - ATAD1 (NM_032810) fusion: c.2301+1532:FGFR2_c.831+3993:ATAD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:ATAD1}	33718243	NA	0	593	10	1966
P-0047504-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8341701	8405591	Exon 40 of PTPRD(-)	Intron of PTPRD(-):931bp before exon 36	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.4087-931_c.4939dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	63890	NA	0	48	10	50
P-0047505-T01-IM6	SOMATIC	SPEN	DDI2	1	1	15957264	16260031	Intron of DDI2(+):208bp after exon 3	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - DDI2 (NM_032341) rearrangement: c.7296:SPEN_c.505+208:DDI2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:DDI2}	302767	NA	0	66	10	74
P-0047505-T01-IM6	SOMATIC	TP53	TP53	17	17	7560480	7578672	3-UTR of ATP1B2(+):6Kb after coding stop	Intron of TP53(-):118bp before exon 5	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.376-118:TP53_chr17:g.7560480inv	PRECISE		MANUAL_OK	3to3	-	18192	NA	0	27	10	27
P-0001694-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865084	42872439	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusiont: c.56-2323:TMPRSS2_c.18+5203:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007355	NA	0	16	10	17
P-0007324-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	212963657	212989570	Intron of ERBB4(-):26Kb after exon 2	Exon 2 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.141_c.234+25820del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25913	NA	0	11	10	11
P-0032400-T02-IM6	SOMATIC	NCOA3	MDM2	20	12	46265559	69227313	Intron of NCOA3(+):53bp after exon 12	Intron of MDM2(+):2Kb before exon 9	GRCh37	TRANSLOCATION	NCOA3 (NM_181659) - MDM2 (NM_002392) rearrangement: t(12;20)(q15;q13.12)(chr12:g.69227313::chr20:g.46265559)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {NCOA3:MDM2}	0	NA	0	38	10	39
P-0039243-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72822696	73717658	Exon 10 of ZFHX3(-)	IGR: 297Kb before LINC01568(+)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.9479:ZFHX3_chr16:g.73717658del	PRECISE		MANUAL_OK	3to5	-	894962	NA	0	6	9	6
P-0042157-T04-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11105844	11148762	Intron of SMARCA4(+):167bp after exon 9	Intron of SMARCA4(+):3Kb after exon 29	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1593+167_c.4170+2954del	PRECISE		MANUAL_OK	3to5	Deletion of 20 exons : in frame	42918	NA	0	3	10	3
P-0042157-T04-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15311628	15404142	Exon 1 of NOTCH3(-)	IGR: 46Kb before BRD4(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.89:NOTCH3_chr19:g.15404142del	PRECISE		MANUAL_OK	3to5	-	92514	NA	0	26	10	26
P-0042157-T04-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178087726	178095941	3-UTR of HNRNPA3(+):10Kb after coding stop	Exon 5 of NFE2L2(-)	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.1390:NFE2L2_chr2:g.178087726del	PRECISE		MANUAL_OK	3to5	-	8215	NA	0	22	10	23
P-0042157-T04-IM6	SOMATIC	EWSR1	EWSR1	22	22	29161255	29692120	IGR: 7Kb before CCDC117(+)	Intron of EWSR1(+):108bp before exon 13	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.1180-109:EWSR1_chr22:g.29161255del	PRECISE		MANUAL_OK	3to5	-	530865	NA	0	44	10	45
P-0046827-T02-IM6	SOMATIC	KIF5B	RET	10	10	32313269	43610889	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):705bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1305:KIF5B_c.2136+705:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297620	NA	0	54	10	67
P-0046827-T02-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	46300876	50479356	3-UTR of ARID2(+):177Kb after coding stop	Intron of SMARCD1(+):27bp after exon 1	GRCh37	INVERSION	SMARCD1 (NM_003076) rearrangement: c.177+27:SMARCD1_chr12:g.46300876inv	PRECISE		MANUAL_OK	3to3	-	4178480	NA	0	150	10	150
P-0047285-T01-IM6	SOMATIC	BCL2L11	BCL2L11	2	2	7205879	111883810	3-UTR of LOC101929452(-):12Kb after coding stop	Intron of BCL2L11(+):2Kb after exon 2	GRCh37	INVERSION	BCL2L11 (NM_138621) rearrangement: c.394+2094:BCL2L11_chr2:g.7205879inv	PRECISE		MANUAL_OK	5to5	-	104677931	NA	0	28	10	28
P-0047317-T01-IM6	SOMATIC	PPARG	PPARG	4	3	34763475	12475518	IGR: 866Kb before LOC101928622(-)	Exon 7 of PPARG(+)	GRCh37	TRANSLOCATION	PPARG (NM_015869) rearrangement: t(3;4)(p25.2;p15.1)(chr3:g.12475518::chr4:g.34763475)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	45	10	44
P-0047317-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30682854	30684389	Exon 2 of MDC1(-)	5-UTR of MDC1(-):16Kb before coding start	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.99:MDC1_chr6:g.30684389del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1535	NA	0	5	7	5
P-0047376-T01-IM6	SOMATIC	C17orf64	NFKBIA	17	14	58507838	35873738	Intron of C17orf64(+):703bp before exon 6	Exon 1 of NFKBIA(-)	GRCh37	TRANSLOCATION	C17orf64 (NM_181707) - NFKBIA (NM_020529) rearrangement: t(14;17)(q13.2;q23.2)(chr14:g.35873738::chr17:g.58507838)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {C17orf64:NFKBIA}	0	NA	0	45	10	45
P-0047491-T01-IM6	SOMATIC	POLD1	SPIB	19	19	50919861	50927544	Intron of POLD1(+):5bp before exon 24	Intron of SPIB(+):532bp after exon 5	GRCh37	DELETION	POLD1 (NM_002691) - SPIB (NM_003121) rearrangement: c.2954-6:POLD1_c.490+532:SPIBdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {POLD1:SPIB}	7683	NA	0	38	10	40
P-0047491-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63387858	63412757	IGR: 17Kb before AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.410:AMER1_chrX:g.63387858del	PRECISE		MANUAL_OK	3to5	-	24899	NA	0	80	10	81
P-0047610-T01-IM6	SOMATIC	MALT1	MALT1	18	18	56392921	56402413	Intron of MALT1(+):2Kb after exon 10	Intron of MALT1(+):20bp before exon 13	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1222+2438_c.1476-21del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	9492	NA	0	5	10	5
P-0047613-T01-IM6	SOMATIC	STK4	TOP1	20	20	39741305	43597361	Intron of TOP1(+):116bp before exon 14	Intron of STK4(+):2Kb after exon 1	GRCh37	DUPLICATION	STK4 (NM_006282) - TOP1 (NM_003286) rearrangement: c.35+2117:STK4_c.1309-117:TOP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {STK4:TOP1}	3856056	NA	0	10	10	11
P-0047614-T01-IM6	SOMATIC	FUT10	WHSC1L1	8	8	33315519	38172468	Intron of FUT10(-):3Kb after exon 2	Intron of WHSC1L1(-):177bp before exon 12	GRCh37	DUPLICATION	FUT10 (NM_032664) - WHSC1L1 (NM_023034) rearrangement: c.81+3371:FUT10_c.2116-177:WHSC1L1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FUT10:WHSC1L1}	4856949	NA	0	44	10	49
P-0047598-T01-IM6	SOMATIC	RET	RET	10	6	43608320	105903895	Exon 9 of RET(+)	IGR: 178Kb before PREP(-)	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(6;10)(q21;q11.21)(chr6:g.105903895::chr10:g.43608320)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	6
P-0047598-T01-IM6	SOMATIC	ETV6	ETV6	17	12	40843830	12034691	Exon 16 of CNTNAP1(+)	Intron of ETV6(+):3Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;17)(p13.2;q21.2)(chr12:g.12034691::chr17:g.40843830)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	76	10	124
P-0047598-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	29374997	32183020	IGR: 11Kb before OR12D2(+)	Exon 12 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.2004:NOTCH4_chr6:g.29374997inv	PRECISE		MANUAL_OK	5to5	-	2808023	NA	0	13	10	20
P-0047603-T01-IM6	SOMATIC	ERCC3	ERCC3	2	2	128036844	128053922	Exon 10 of ERCC3(-)	Promoter of ERCC3(-):39Kb from tx start	GRCh37	INVERSION	ERCC3 (NM_000122) rearrangement: c.1635:ERCC3_chr2:g.128053922inv	PRECISE		MANUAL_OK	3to3	-	17078	NA	0	26	10	26
P-0047604-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739913	1808692	Intron of TACC3(+):484bp after exon 10	Intron of FGFR3(+):31bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+31:FGFR3_c.1941+484:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68779	NA	0	163	10	180
P-0047604-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1739913	1808692	Intron of TACC3(+):484bp after exon 10	Intron of FGFR3(+):31bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+31:FGFR3_c.1941+484:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68779	NA	0	65	10	73
P-0047618-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36164620	36171517	Exon 9 of RUNX1(-)	Intron of RUNX1(-):80bp after exon 8	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.967+81_c.1255del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6897	NA	0	6	0	12
P-0027633-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42878750	40846539	Intron of TMPRSS2(-):1Kb after exon 1	Intron of CNTNAP1(+):985bp after exon 18	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.2;q22.3)(chr17:g.40846539::chr21:g.42878750)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	6
P-0032954-T05-IM6	SOMATIC	ABL1	ABL1	9	9	133752144	133753808	Intron of ABL1(+):2Kb before exon 8	Exon 8 of ABL1(+)	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.1271-1658_c.1277del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1664	NA	0	5	0	6
P-0047183-T02-IM6	SOMATIC	HGF	HGF	7	7	81330692	81331980	Promoter of HGF(-):751bp from tx start	Exon 18 of HGF(-)	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.2104:HGF_chr7:g.81330692inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1288	NA	0	17	10	19
P-0047544-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980401	202099757	Exon 2 of ELF3(+)	Promoter of ARL8A(-):3Kb from tx start	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.137:ELF3_chr1:g.202099757del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	119356	NA	0	73	10	80
P-0047546-T01-IM6	SOMATIC	ANKRD11	SPG7	16	16	89350836	89614392	Exon 9 of ANKRD11(-)	Intron of SPG7(+):18bp before exon 12	GRCh37	INVERSION	ANKRD11 (NM_013275) - SPG7 (NM_003119) rearrangement: c.2114:ANKRD11_c.1553-19:SPG7inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ANKRD11:SPG7}	263556	NA	0	31	10	36
P-0047568-T01-IM6	SOMATIC	RRAGC	RRAGC	1	1	28523809	39318008	Promoter of DNAJC8(-):3Kb from tx start	Intron of RRAGC(-):37bp after exon 4	GRCh37	DELETION	RRAGC (NM_022157) rearrangement: c.756+38:RRAGC_chr1:g.28523809del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {RRAGC:DNAJC8}	10794199	NA	0	11	10	14
P-0047568-T01-IM6	SOMATIC	SMAD2	SMAD2	18	18	45371783	45372830	Exon 10 of SMAD2(-)	Intron of SMAD2(-):659bp before exon 9	GRCh37	DUPLICATION	SMAD2 (NM_001003652) rearrangement: c.998-659_c.1208dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1047	NA	0	13	10	13
P-0047568-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14227968	14628127	Intron of PRKACA(-):345bp after exon 1	Intron of DNAJB1(-):269bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) rearrangement: c.212-269:DNAJB1_c.46+346:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	400159	NA	0	28	10	29
P-0047568-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86672433	86729048	Intron of RASA1(+):51bp after exon 16	IGR: 39Kb before CCNH(-)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2184+51:RASA1_chr5:g.86729048del	PRECISE		MANUAL_OK	3to5	-	56615	NA	0	10	9	10
P-0047573-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740537	1808844	Intron of TACC3(+):891bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2276:FGFR3_c.1942-892:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68307	NA	0	68	10	73
P-0047575-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117864461	117879554	Intron of RAD21(-):126bp before exon 11	5-UTR of RAD21(-):20Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.1322-126:RAD21_chr8:g.117879554del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	15093	NA	0	6	5	7
P-0026989-T03-IM6	SOMATIC	CDK12	CDK12	17	17	36372477	37676094	3-UTR of LOC440434(-):41Kb after coding stop	Intron of CDK12(+):114bp before exon 11	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.2964-115:CDK12_chr17:g.36372477del	PRECISE		MANUAL_OK	3to5	-	1303617	NA	0	5	10	15
P-0026989-T03-IM6	SOMATIC	KDM6A	KDM6A	X	X	44753610	44945337	Intron of KDM6A(+):20Kb after exon 2	Intron of KDM6A(+):113bp after exon 24	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.225+20377_c.3548+113dup	PRECISE		MANUAL_OK	5to3	Duplication of 22 exons : out of frame	191727	NA	0	17	10	18
P-0046745-T01-IM6	SOMATIC	FGFR3	FGFR3	10	4	119935563	1808988	5-UTR of CASC2(+):34Kb before coding start	Exon 18 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;10)(p16.3;q26.11)(chr4:g.1808988::chr10:g.119935563)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	36	10	35
P-0046745-T01-IM6	SOMATIC	KCND2	BRAF	7	7	120007598	140485867	Intron of KCND2(+):92Kb after exon 1	Intron of BRAF(-):1Kb after exon 9	GRCh37	INVERSION	KCND2 (NM_012281) - BRAF (NM_004333) fusion: c.1115+91797:KCND2_c.1177+1481:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {KCND2:BRAF}	20478269	NA	0	8	10	8
P-0047471-T02-IM6	SOMATIC	PIK3R2	PIK3R2	19	1	18271152	161137226	Intron of PIK3R2(+):128bp before exon 3	Exon 4 of PPOX(+)	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(1;19)(q23.3;p13.11)(chr1:g.161137226::chr19:g.18271152)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	12
P-0047568-T02-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14227968	14628127	Intron of PRKACA(-):345bp after exon 1	Intron of DNAJB1(-):269bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) rearrangement: c.212-269:DNAJB1_c.46+346:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	400159	NA	0	57	10	58
P-0047634-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11875796	12017204	Intron of ETV6(+):30Kb before exon 2	Intron of ETV6(+):5Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.34-29588_c.464-5154del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	141408	NA	0	49	10	49
P-0047636-T01-IM6	SOMATIC	TP53	TP53	17	17	7569417	7577125	Promoter of TP53(-):2Kb from tx start	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.813:TP53_chr17:g.7569417del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7708	NA	0	61	10	66
P-0047637-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140501219	142196577	Exon 6 of BRAF(-)	IGR: 178Kb before MTRNR2L6(+)	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.853:BRAF_chr7:g.142196577inv	PRECISE		MANUAL_OK	5to5	-	1695358	NA	0	17	10	28
P-0047640-T01-IM6	SOMATIC	MYC	MYC	9	8	122069207	128750568	Intron of BRINP1(-):6Kb after exon 2	Exon 2 of MYC(+)	GRCh37	TRANSLOCATION	MYC (NM_002467) rearrangement: t(8;9)(q24.21;q33.1)(chr8:g.128750568::chr9:g.122069207)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	74	10	92
P-0047647-T01-IM6	SOMATIC	AURKA	AURKA	20	20	54701767	54948420	IGR: 122Kb before MC3R(+)	Intron of AURKA(-):43bp after exon 7	GRCh37	DELETION	AURKA (NM_003600) rearrangement: c.854+44:AURKA_chr20:g.54701767del	PRECISE		MANUAL_OK	3to5	-	246653	NA	0	7	10	7
P-0047648-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49445890	69859324	Exon 10 of KMT2D(-)	IGR: 5Kb before FRS2(+)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.1576:KMT2D_chr12:g.69859324del	PRECISE		MANUAL_OK	3to5	-	20413434	NA	0	46	10	48
P-0047648-T01-IM6	SOMATIC	RTEL1	VRK3	20	19	62325880	50499591	Intron of RTEL1(+):39bp after exon 31	Intron of VRK3(-):1Kb before exon 8	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) - VRK3 (NM_016440) rearrangement: t(19;20)(q13.33;q13.33)(chr19:g.50499591::chr20:g.62325880)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RTEL1:VRK3}	0	NA	0	30	0	34
P-0047648-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	149438785	149440519	Intron of CSF1R(-):477bp after exon 15	Exon 14 of CSF1R(-)	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.1875_c.2132+478del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1734	NA	0	9	10	11
P-0047650-T01-IM6	SOMATIC	CLSPN	CSF3R	1	1	36230399	36939574	Intron of CLSPN(-):84bp before exon 3	Intron of CSF3R(-):86bp before exon 5	GRCh37	DUPLICATION	CLSPN (NM_022111) - CSF3R (NM_000760) rearrangement: c.134-84:CLSPN_c.362-86:CSF3Rdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CLSPN:CSF3R}	709175	NA	0	5	0	5
P-0047666-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77064578	77069987	Intron of PAK1(-):2bp after exon 8	Exon 6 of PAK1(-)	GRCh37	INVERSION	PAK1 (NM_002576) rearrangement: c.553_c.836+3inv	PRECISE		MANUAL_OK	3to3	-	5409	NA	0	46	10	46
P-0047673-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72505498	72845549	3-UTR of LINC01572(-):193Kb after coding stop	Exon 7 of ZFHX3(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.3791:ZFHX3_chr16:g.72505498inv	PRECISE		MANUAL_OK	3to3	-	340051	NA	0	32	10	31
P-0047673-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72845783	72881203	Intron of ZFHX3(-):20bp after exon 6	Intron of ZFHX3(-):17Kb before exon 5	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.3449-17445_c.3663+21inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	35420	NA	0	56	10	58
P-0021823-T02-IM6	SOMATIC	ETV1	ETV1	14	7	21735813	14026320	5-UTR of HNRNPC(-):56Kb before coding start	Intron of ETV1(-):10bp before exon 4	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) rearrangement: t(7;14)(p21.2;q11.2)(chr7:g.14026320::chr14:g.21735813)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {HNRNPC:ETV1}	0	NA	0	40	10	40
P-0043100-T02-IM6	SOMATIC	TP53	TP53	17	17	7575719	7577036	Intron of TP53(-):1Kb after exon 9	Exon 8 of TP53(-)	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.902_c.993+1134inv	PRECISE		MANUAL_OK	3to3	-	1317	NA	0	20	10	28
P-0047755-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87549308	132645227	Intron of NTRK2(+):101bp after exon 17	Promoter of USP20(+):48Kb from tx start	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.1764+101:NTRK2_chr9:g.132645227del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NTRK2:USP20}	45095919	NA	0	11	10	16
P-0047760-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3573904	3900335	Intron of CLUAP1(+):605bp after exon 8	Exon 2 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.761:CREBBP_chr16:g.3573904del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	326431	NA	0	21	10	22
P-0047760-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47039898	47043013	Exon 12 of RBM10(+)	Intron of RBM10(+):1Kb after exon 17	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.1436_c.2145+1288inv	PRECISE		MANUAL_OK	5to5	-	3115	NA	0	47	10	52
P-0034605-T03-IM6	SOMATIC	SUGP1	BRD4	19	19	15367031	19408092	Exon 9 of BRD4(-)	Exon 8 of SUGP1(-)	GRCh37	DELETION	SUGP1 (NM_172231) - BRD4 (NM_058243) rearrangement: c.949:SUGP1_c.1595:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUGP1:BRD4}	4041061	NA	0	6	8	6
P-0034605-T03-IM6	SOMATIC	AGO2	AGO2	8	8	141486602	141551202	IGR: 35Kb before CHRAC1(+)	Intron of AGO2(-):60bp after exon 15	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.2034+61:AGO2_chr8:g.141486602del	PRECISE		MANUAL_OK	3to5	-	64600	NA	0	6	10	6
P-0044541-T03-IM6	SOMATIC	C11orf95	RELA	11	11	63532059	65430161	Exon 4 of C11orf95(-)	Intron of RELA(-):135bp after exon 1	GRCh37	DUPLICATION	C11orf95 (NM_001144936)  - RELA (NM_021975) fusion : c.1036:C11orf95_c.7+136:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C11orf95:RELA}	1898102	NA	0	92	10	98
P-0047697-T01-IM6	SOMATIC	YAP1	YAP1	11	11	42257177	101981926	3-UTR of LOC100507205(-):18Kb after coding stop	Intron of YAP1(+):26bp after exon 1	GRCh37	INVERSION	YAP1 (NM_001130145) rearrangement: c.321+26:YAP1_chr11:g.42257177inv	PRECISE		MANUAL_OK	3to3	-	59724749	NA	0	44	10	44
P-0047698-T01-IM6	SOMATIC	VOPP1	MDM2	12	7	69202298	55565973	Intron of MDM2(+):27bp after exon 1	Intron of VOPP1(-):590bp before exon 3	GRCh37	TRANSLOCATION	VOPP1 (NM_030796) - MDM2 (NM_002392) rearrangement: t(7;12)(p11.2;q15)(chr7:g.55565973::chr12:g.69202298)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {VOPP1:MDM2}	0	NA	0	36	0	43
P-0047698-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55202190	55222784	Intron of EGFR(+):8Kb before exon 2	Intron of EGFR(+):738bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-7789_c.890-739del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20594	NA	0	66	10	68
P-0047709-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89337464	89349557	Intron of ANKRD11(-):147bp before exon 12	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.3393_c.7714-147del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12093	NA	0	39	10	39
P-0047710-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1980480	1981450	Exon 22 of WHSC1(+)	3-UTR of WHSC1(+):79Kb after coding stop	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.3942:WHSC1_chr4:g.1981450del	PRECISE		MANUAL_OK	3to5	-	970	NA	0	8	10	8
P-0047710-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101908428	101909994	Intron of TGFBR1(+):338bp before exon 7	Exon 8 of TGFBR1(+)	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.1131-339_c.1314del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1566	NA	0	20	10	20
P-0047716-T01-IM6	SOMATIC	POLE	POLE	12	12	133209072	133210915	Exon 45 of POLE(-)	Exon 43 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.5861_c.6159del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1843	NA	0	17	10	17
P-0047719-T01-IM6	SOMATIC	AKAP8L	BRD4	19	19	15375463	15501266	Exon 6 of BRD4(-)	Intron of AKAP8L(-):7Kb after exon 12	GRCh37	DELETION	AKAP8L (NM_014371) - BRD4 (NM_058243) rearrangement: c.1536+6695:AKAP8L_c.964:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AKAP8L:BRD4}	125803	NA	0	3	8	3
P-0047732-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47038857	47042089	Exon 9 of RBM10(+)	Intron of RBM10(+):364bp after exon 17	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.1059_c.2145+364inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3232	NA	0	15	10	15
P-0047737-T01-IM6	SOMATIC	KRAS	PIKFYVE	12	2	25398161	209141988	Intron of KRAS(-):46bp after exon 2	Intron of PIKFYVE(+):272bp before exon 5	GRCh37	TRANSLOCATION	KRAS (NM_033360) - PIKFYVE (NM_015040) rearrangement: t(2;12)(q34;p12.1)(chr2:g.209141988::chr12:g.25398161)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KRAS:PIKFYVE}	0	NA	0	5	0	5
P-0047741-T01-IM6	SOMATIC	MAOA	KDM6A	X	X	43569344	44938394	Intron of MAOA(+):2Kb before exon 4	Exon 20 of KDM6A(+)	GRCh37	DELETION	MAOA (NM_000240) - KDM6A (NM_021140) rearrangement: c.307-1775:MAOA_c.2942:KDM6Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MAOA:KDM6A}	1369050	NA	0	13	10	14
P-0047742-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38272034	38273835	Intron of FGFR1(-):42bp after exon 16	Intron of FGFR1(-):257bp before exon 14	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1757-257_c.2141+43del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1801	NA	0	12	10	13
P-0047743-T01-IM6	SOMATIC	HIST1H3B	HIST1H3B	6	2	26032075	137043939	Exon 1 of HIST1H3B(-)	IGR: 172Kb before CXCR4(-)	GRCh37	TRANSLOCATION	HIST1H3B (NM_003537) rearrangement: t(2;6)(q22.1;p22.2)(chr2:g.137043939::chr6:g.26032075)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	34	10	34
P-0047748-T01-IM6	SOMATIC	MGA	MGA	15	15	42009366	42021602	Intron of MGA(+):4Kb after exon 9	Intron of MGA(+):55bp after exon 11	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.3430+3672_c.3843+55inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	12236	NA	0	18	0	17
P-0047752-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118305881	118307492	Promoter of KMT2A(+):1Kb from tx start	Exon 1 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.265:KMT2A_chr11:g.118305881del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1611	NA	0	23	10	24
P-0016624-T02-IM6	SOMATIC	ALK	ALK	2	2	13865654	29606506	IGR: 503Kb before LINC00276(-)	Intron of ALK(-):91bp after exon 5	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.1282+92:ALK_chr2:g.13865654del	PRECISE		MANUAL_OK	3to5	-	15740852	NA	0	12	10	12
P-0041409-T04-IM6	SOMATIC	TET2	TET2	22	4	48672816	106156620	Promoter of MIR3201(+):3Kb from tx start	Exon 3 of TET2(+)	GRCh37	TRANSLOCATION	TET2 (NM_001127208) rearrangement: t(4;22)(q24;q13.32)(chr4:g.106156620::chr22:g.48672816)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	35	10	10
P-0047234-T02-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12856023	12870845	IGR: 14Kb before CDKN1B(+)	Exon 1 of CDKN1B(+)	GRCh37	INVERSION	CDKN1B (NM_004064) rearrangement: c.72:CDKN1B_chr12:g.12856023inv	PRECISE		MANUAL_OK	3to3	-	14822	NA	0	12	10	12
P-0047576-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139366594	139411824	Intron of SEC16A(-):31bp before exon 4	Exon 9 of NOTCH1(-)	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3568-31:SEC16A_c.1455:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	45230	NA	0	2	8	2
P-0047587-T02-IM6	SOMATIC	RAD52	IRAK2	12	3	1025758	10275468	Intron of RAD52(-):46bp after exon 8	Intron of IRAK2(+):674bp before exon 11	GRCh37	TRANSLOCATION	RAD52 (NM_134424) - IRAK2 (NM_001570) rearrangement: t(3;12)(p25.3;p13.33)(chr3:g.10275468::chr12:g.1025758)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RAD52:IRAK2}	0	NA	0	13	10	13
P-0047878-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156843219	156997988	Intron of NTRK1(+):205bp before exon 8	Intron of ARHGEF11(-):16Kb after exon 1	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.851-206:NTRK1_chr1:g.156997988del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	154769	NA	0	6	10	6
P-0047878-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67592368	136534380	Intron of PIK3R1(+):199bp after exon 15	Intron of SPOCK1(-):58Kb before exon 4	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1985+199:PIK3R1_chr5:g.136534380del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	68942012	NA	0	8	10	8
P-0047880-T01-IM6	SOMATIC	RECQL4	ARHGAP39	8	8	145737266	145760141	Intron of RECQL4(-):27bp after exon 20	Intron of ARHGAP39(-):555bp before exon 9	GRCh37	DUPLICATION	RECQL4 (NM_004260) - ARHGAP39 (NM_025251) rearrangement: c.3393+28:RECQL4_c.2615-555:ARHGAP39dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RECQL4:ARHGAP39}	22875	NA	0	5	10	5
P-0047882-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857881	42868697	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement: c.126+1349_c.556+2440dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	10816	NA	0	46	10	47
P-0047889-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67196018	67197939	Exon 1 of RPS6KB2(+)	Intron of RPS6KB2(+):873bp after exon 4	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.2_c.309+873inv	PRECISE		MANUAL_OK	5to5	-	1921	NA	0	4	10	4
P-0047890-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44861159	44922494	Intron of KDM6A(+):9Kb before exon 5	Intron of KDM6A(+):172bp before exon 16	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.385-9047_c.1528-173del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : in frame	61335	NA	0	9	4	12
P-0047892-T01-IM6	SOMATIC	MET	MET	8	7	11529165	116435712	IGR: 33Kb before GATA4(+)	Exon 20 of MET(+)	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(7;8)(q31.2;p23.1)(chr7:g.116435712::chr8:g.11529165)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	346	10	536
P-0047895-T01-IM6	SOMATIC	ARAF	ARAF	X	1	47428502	194980077	Intron of ARAF(+):70bp after exon 12	IGR: 1Mb before KCNT2(-)	GRCh37	TRANSLOCATION	ARAF (NM_001654) rearrangement: t(1;X)(q31.3;p11.23)(chr1:g.194980077::chrX:g.47428502)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	36	10	37
P-0047902-T01-IM6	SOMATIC	JAK1	JAK1	3	1	129135343	65309773	Intron of EFCAB12(-):1Kb before exon 4	Exon 17 of JAK1(-)	GRCh37	TRANSLOCATION	JAK1 (NM_002227) rearrangement: t(1;3)(p31.3;q21.3)(chr1:g.65309773::chr3:g.129135343)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {JAK1:EFCAB12}	0	NA	0	5	10	5
P-0047905-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12011164	15129970	Intron of ETV6(+):5Kb after exon 4	5-UTR of PDE6H(+):976bp before coding start	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+4669:ETV6_chr12:g.15129970del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ETV6:PDE6H}	3118806	NA	0	17	10	17
P-0047905-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739229	1808802	Intron of TACC3(+):95bp before exon 10	Intron of FGFR3(+):40bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-41:FGFR3_c.1837-96:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69573	NA	0	108	10	111
P-0047715-T01-IM6	SOMATIC	SPEN	PLEKHM2	1	1	16021020	16260968	Intron of PLEKHM2(+):10Kb after exon 1	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - PLEKHM2 (NM_015164) rearrangement: c.8233:SPEN_c.60+9907:PLEKHM2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:PLEKHM2}	239948	NA	0	36	0	38
P-0047715-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49439643	99540965	Intron of KMT2D(-):59bp after exon 18	Intron of ANKS1B(-):7Kb after exon 15	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.4741+60:KMT2D_chr12:g.99540965inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	50101322	NA	0	111	0	138
P-0047883-T01-IM6	SOMATIC	PLCD3	MAP3K14	17	17	43195495	43344710	Exon 7 of PLCD3(-)	Intron of MAP3K14(-):62bp after exon 12	GRCh37	DUPLICATION	PLCD3(NM_133373) - MAP3K14 (NM_003954) rearrangement : c.1126:PLCD3_.3:c.2325+63dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLCD3:MAP3K14}	149215	NA	0	6	10	6
P-0047883-T01-IM6	SOMATIC	CHEK2	CHEK2	22	22	29089997	29118326	Intron of CHEK2(-):22bp after exon 13	Intron of CHEK2(-):3Kb after exon 4	GRCh37	INVERSION	CHEK2 (NM_007194) rearrangement: c.592+2639_c.1461+23inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	28329	NA	0	19	10	59
P-0031560-T04-IM6	SOMATIC	ETV6	ETV6	12	12	12016211	12130885	Intron of ETV6(+):6Kb before exon 5	IGR: 93Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-6147:ETV6_chr12:g.12130885del	PRECISE		MANUAL_OK	3to5	-	114674	NA	0	30	10	30
P-0031560-T04-IM6	SOMATIC	FGFR4	NSD1	5	5	176523632	176568265	Exon 16 of FGFR4(+)	Intron of NSD1(+):5Kb after exon 2	GRCh37	INVERSION	FGFR4 (NM_213647) - NSD1 (NM_022455) rearrangement: c.2043:FGFR4_c.927+5234:NSD1inv	IMPPRECISE		MANUAL_OK	5to5	-	44633	NA	0	12	0	18
P-0032986-T02-IM6	SOMATIC	BRAF	BRAF	8	7	11716338	140500362	5-UTR of CTSB(-):14Kb before coding start	Intron of BRAF(-):81bp before exon 7	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;8)(q34;p23.1)(chr7:g.140500362::chr8:g.11716338)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CTSB:BRAF}	0	NA	0	26	10	28
P-0047795-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42855586	42875071	Intron of TMPRSS2(-):3Kb before exon 6	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.55+4806_c.557-3057inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	19485	NA	0	45	10	56
P-0047797-T01-IM6	SOMATIC	CCND1	CCND1	11	11	69465969	69469425	Exon 5 of CCND1(+)	Promoter of CCND1(+):14Kb from tx start	GRCh37	DELETION	CCND1 (NM_053056) rearrangement: c.807:CCND1_chr11:g.69469425del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3456	NA	0	69	10	76
P-0047797-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212478020	212530020	Intron of ERBB4(-):6Kb after exon 19	Intron of ERBB4(-):27bp after exon 15	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.1871+28_c.2301+5882del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	52000	NA	0	20	10	21
P-0047802-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11999366	12020892	Intron of ETV6(+):7Kb before exon 4	Intron of ETV6(+):1Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.329-6995_c.464-1466dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	21526	NA	0	4	10	5
P-0047806-T01-IM6	SOMATIC	ATM	ATM	11	11	108096596	108106400	5-UTR of ATM(+):2Kb before coding start	Exon 5 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.335:ATM_chr11:g.108096596del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9804	NA	0	6	0	6
P-0047937-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42854129	42867987	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement: c.127-1482_c.557-1600dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	13858	NA	0	72	10	78
P-0047937-T01-IM6	SOMATIC	PIK3R1	PIK3R1	6	5	76642727	67591383	Intron of IMPG1(-):2Kb before exon 15	Intron of PIK3R1(+):67bp after exon 14	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;6)(q13.1;q14.1)(chr5:g.67591383::chr6:g.76642727)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	23	10	23
P-0047941-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268483	55425861	Intron of EGFR(+):377bp after exon 24	IGR: 7Kb before LANCL2(+)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2946+377:EGFR_chr7:g.55425861inv	PRECISE		MANUAL_OK	3to3	-	157378	NA	0	69	10	392
P-0047967-T01-IM6	SOMATIC	KEAP1	KEAP1	19	12	10602408	6299627	Exon 3 of KEAP1(-)	IGR: 10Kb before CD9(+)	GRCh37	TRANSLOCATION	KEAP1 (NM_203500) rearrangement: t(12;19)(p13.31;p13.2)(chr12:g.6299627::chr19:g.10602408)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	41
P-0047970-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	5	35873665	14649357	Exon 1 of NFKBIA(-)	IGR: 15Kb before OTULIN(+)	GRCh37	TRANSLOCATION	NFKBIA (NM_020529) rearrangement: t(5;14)(p15.2;q13.2)(chr5:g.14649357::chr14:g.35873665)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	73	10	99
P-0048007-T01-IM6	SOMATIC	FANCC	FANCC	22	9	44300238	97864041	IGR: 19Kb before PNPLA3(+)	Exon 15 of FANCC(-)	GRCh37	TRANSLOCATION	FANCC (NM_000136) rearrangement: t(9;22)(q22.32;q13.31)(chr9:g.97864041::chr22:g.44300238)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	23
P-0047640-T02-IM6	SOMATIC	MYC	MYC	9	8	122069207	128750568	Intron of BRINP1(-):6Kb after exon 2	Exon 2 of MYC(+)	GRCh37	TRANSLOCATION	MYC (NM_002467) rearrangement: t(8;9)(q24.21;q33.1)(chr8:g.128750568::chr9:g.122069207)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	113	10	150
P-0047918-T02-IM6	SOMATIC	FAM131B	BRAF	7	7	140487437	143056532	Intron of BRAF(-):53bp before exon 9	Intron of FAM131B(-):20bp before exon 4	GRCh37	DELETION	FAM131B (NM_001031690) - BRAF (NM_004333) fusion: c.175-20:FAM131B_c.1141-53:BRAFdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FAM131B:BRAF}	2569095	NA	0	34	10	35
P-0047982-T01-IM6	SOMATIC	PTEN	PTEN	10	5	89624398	55280572	Intron of PTEN(+):93bp after exon 1	3-UTR of IL6ST(-):10Kb after coding stop	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(5;10)(q11.2;q23.31)(chr5:g.55280572::chr10:g.89624398)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	12	0	14
P-0048011-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99451943	99468294	Exon 6 of IGF1R(+)	Intron of IGF1R(+):381bp after exon 13	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.1277_c.2782+381dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	16351	NA	0	59	10	59
P-0048011-T01-IM6	SOMATIC	RARA	RARA	17	17	38487931	78357317	Intron of RARA(+):283bp after exon 2	Intron of RNF213(+):159bp before exon 59	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.178+283:RARA_chr17:g.78357317inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	39869386	NA	0	4	5	4
P-0017325-T04-IM6	SOMATIC	NUP93	NUP93	16	16	49013349	56866318	IGR: 298Kb before CBLN1(-)	Intron of NUP93(+):18bp after exon 12	GRCh37	INVERSION	NUP93 (NM_014669) rearrangement: c.1345+18:NUP93_chr16:g.49013349inv	PRECISE		MANUAL_OK	3to3	-	7852969	NA	0	5	9	5
P-0018529-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48564646	48591896	5-UTR of SMAD4(+):9Kb before coding start	Exon 9 of SMAD4(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.1059:SMAD4_chr18:g.48564646inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	27250	NA	0	29	10	29
P-0019023-T05-IM6	SOMATIC	SHQ1	SHQ1	3	3	59880285	72866236	Intron of FHIT(-):28Kb after exon 8	Intron of SHQ1(-):144bp after exon 7	GRCh37	INVERSION	SHQ1 (NM_018130) rearrangement: c.882+145:SHQ1_chr3:g.59880285inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12985951	NA	0	11	10	11
P-0047480-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29688384	128649430	Intron of EWSR1(+):92bp before exon 12	Intron of FLI1(+):2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128649430::chr22:g.29688384)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	53	10	53
P-0047827-T02-IM6	SOMATIC	WIZ	BRD4	19	19	15355442	15543965	Intron of BRD4(-):31bp before exon 13	Intron of WIZ(-):4Kb after exon 3	GRCh37	DELETION	WIZ (NM_021241) - BRD4 (NM_058243) rearrangement: c.529+3652:WIZ_c.2212-31:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {WIZ:BRD4}	188523	NA	0	42	10	43
P-0047827-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55241121	55270027	Intron of EGFR(+):304bp after exon 17	Intron of EGFR(+):182bp before exon 27	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+304_c.3163-183dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28906	NA	0	87	10	91
P-0047946-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10250359	10254637	Exon 33 of DNMT1(-)	Exon 28 of DNMT1(-)	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.2873_c.3893del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4278	NA	0	7	10	7
P-0047946-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14227017	14628514	Intron of PRKACA(-):1Kb after exon 1	Intron of DNAJB1(-):436bp after exon 1	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.211+437:DNAJB1_c.46+1297:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	401497	NA	0	5	10	5
P-0047959-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870113	42868491	Intron of ERG(-):173bp after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1555:TMPRSS2_c.18+174:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2998378	NA	0	39	0	43
P-0048004-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71102909	71123551	Exon 4 of FOXP1(-)	Intron of FOXP1(-):21Kb before exon 4	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.283-20627_c.298del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	20642	NA	0	10	10	11
P-0048033-T01-IM6	SOMATIC	BAIAP2	RPTOR	17	17	78867455	79062963	Intron of RPTOR(+):51bp before exon 20	Intron of BAIAP2(+):3Kb after exon 6	GRCh37	DUPLICATION	BAIAP2 (NM_017451) - RPTOR (NM_020761) rearrangement: c.489+2583:BAIAP2_c.2243-52:RPTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BAIAP2:RPTOR}	195508	NA	0	2	4	3
P-0048036-T01-IM6	SOMATIC	NEO1	BRAF	15	7	73575682	140497651	Intron of NEO1(+):230bp after exon 22	Intron of BRAF(-):3Kb after exon 7	GRCh37	TRANSLOCATION	NEO1 (NM_002499) - BRAF (NM_004333) fusion: t(7;15)(q34;q24.1)(chr7:g.140497651::chr15:g.73575682)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NEO1:BRAF}	0	NA	0	83	10	79
P-0048038-T01-IM6	SOMATIC	CD274	CD274	20	9	22314553	5463221	IGR: 54Kb before LINC01427(-)	Intron of CD274(+):100bp after exon 4	GRCh37	TRANSLOCATION	CD274 (NM_014143) rearrangement: t(9;20)(p24.1;p11.21)(chr9:g.5463221::chr20:g.22314553)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	13	10	13
P-0048041-T01-IM6	SOMATIC	TSC1	AK8	9	9	135684743	135772792	Intron of AK8(-):5Kb after exon 10	Intron of TSC1(-):17bp after exon 21	GRCh37	DELETION	TSC1 (NM_000368) - AK8 (NM_152572) rearrangement: c.2813+18:TSC1_c.979+5282:AK8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TSC1:AK8}	88049	NA	0	22	10	22
P-0048072-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39888058	42870118	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-2:TMPRSS2_c.39+59528:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2982060	NA	0	29	10	31
P-0048087-T01-IM6	SOMATIC	HIST1H3B	HIST1H3B	6	6	26032117	26205454	Exon 1 of HIST1H3B(-)	Promoter of HIST1H4E(+):582bp from tx start	GRCh37	DELETION	HIST1H3B (NM_003537) rearrangement: c.172:HIST1H3B_chr6:g.26205454del	PRECISE		MANUAL_OK	3to5	-	173337	NA	0	4	10	4
P-0048114-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11106966	11108801	Exon 10 of SMARCA4(+)	Intron of SMARCA4(+):2Kb after exon 11	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1671_c.1812+1581del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1835	NA	0	10	10	10
P-0048115-T01-IM6	SOMATIC	DIS3	DIS3	13	13	32297113	73344958	IGR: 17Kb before RXFP2(+)	Intron of DIS3(-):83bp after exon 13	GRCh37	DELETION	DIS3 (NM_014953) rearrangement: c.1755+84:DIS3_chr13:g.32297113del	IMPPRECISE		MANUAL_OK	3to5	-	41047845	NA	0	15	0	15
P-0048115-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187335856	187549779	3-UTR of F11-AS1(-):86Kb after coding stop	Exon 8 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.4462:FAT1_chr4:g.187335856del	PRECISE		MANUAL_OK	3to5	-	213923	NA	0	25	10	25
P-0048159-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140485157	140508095	Intron of BRAF(-):2Kb after exon 9	Intron of BRAF(-):233bp before exon 5	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.609-233_c.1177+2191dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	22938	NA	0	9	10	9
P-0048161-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48593480	48835676	Exon 10 of SMAD4(+)	IGR: 83Kb before LOC100287225(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.1231:SMAD4_chr18:g.48835676inv	PRECISE		MANUAL_OK	3to3	-	242196	NA	0	34	10	32
P-0048162-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10247820	10250249	Exon 36 of DNMT1(-)	Intron of DNMT1(-):102bp after exon 33	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.3900+103_c.4382inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2429	NA	0	19	10	22
P-0048165-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241121	55269921	Intron of EGFR(+):304bp after exon 17	Intron of EGFR(+):288bp before exon 27	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+304_c.3163-289dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28800	NA	0	164	0	1400
P-0048165-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268269	55269483	Intron of EGFR(+):163bp after exon 24	Intron of EGFR(+):8bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+163_c.3162+8del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1214	NA	0	258	10	303
P-0048169-T01-IM6	SOMATIC	RB1	RB1	13	13	48951271	49030618	Intron of RB1(+):101bp after exon 13	Intron of RB1(+):133bp after exon 19	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1332+101_c.1960+133del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	79347	NA	0	31	10	31
P-0045414-T02-IM6	SOMATIC	PBRM1	PBRM1	3	3	52620198	52627500	Intron of PBRM1(-):242bp after exon 21	Intron of PBRM1(-):4Kb before exon 19	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.2780-4229_c.3312+243dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	7302	NA	0	9	4	10
P-0047366-T03-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2490545	52478037	Intron of TNFRSF14(+):638bp after exon 3	IGR: 8Kb before TXNDC12(-)	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.304+638:TNFRSF14_chr1:g.52478037inv	PRECISE		MANUAL_OK	3to3	-	49987492	NA	0	27	10	27
P-0048139-T01-IM6	SOMATIC	MED1	ERBB2	17	17	37599467	37880752	Intron of MED1(-):335bp after exon 3	Intron of ERBB2(+):226bp before exon 20	GRCh37	INVERSION	MED1 (NM_004774) - ERBB2 (NM_004448) rearrangement: c.211+336:MED1_c.2308-227:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MED1:ERBB2}	281285	NA	0	53	10	67
P-0048139-T01-IM6	SOMATIC	TRAF2	TRAF2	9	9	139817993	139820036	Intron of TRAF2(+):310bp before exon 10	Intron of TRAF2(+):98bp before exon 11	GRCh37	DELETION	TRAF2 (NM_021138) rearrangement: c.1139-311_c.1288-99del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2043	NA	0	4	7	5
P-0048141-T01-IM6	SOMATIC	ESR1	ESR1	6	6	126953648	152415583	IGR: 293Kb before CENPW(+)	Exon 8 of ESR1(+)	GRCh37	INVERSION	ESR1 (NM_001122740) rearrangement: c.1433:ESR1_chr6:g.126953648inv	PRECISE		MANUAL_OK	5to5	-	25461935	NA	0	39	10	40
P-0048143-T01-IM6	SOMATIC	CREBBP	CSMD1	16	8	3781048	3507359	Intron of CREBBP(-):144bp after exon 30	Intron of CSMD1(-):33Kb before exon 8	GRCh37	TRANSLOCATION	CREBBP (NM_004380) - CSMD1 (NM_033225) rearrangement: t(8;16)(p23.2;p13.3)(chr8:g.3507359::chr16:g.3781048)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CREBBP:CSMD1}	0	NA	0	8	0	8
P-0048144-T01-IM6	SOMATIC	KMT2A	KMT2A	11	1	118367285	23703057	Intron of KMT2A(+):203bp after exon 20	IGR: 4Kb before TCEA3(-)	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(1;11)(p36.12;q23.3)(chr1:g.23703057::chr11:g.118367285)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	7
P-0048151-T01-IM6	SOMATIC	INPPL1	LRTOMT	11	11	71803301	71948466	Intron of LRTOMT(+):1Kb before exon 4	Exon 26 of INPPL1(+)	GRCh37	DUPLICATION	INPPL1 (NM_001567) - LRTOMT (NM_145309) rearrangement: c.3178:INPPL1_c.83-1241:LRTOMTdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {INPPL1:LRTOMT}	145165	NA	0	20	10	20
P-0048156-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2215167	2217041	Intron of DOT1L(+):572bp after exon 19	Exon 21 of DOT1L(+)	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.1923+572_c.2496inv	PRECISE		MANUAL_OK	5to5	-	1874	NA	0	23	10	25
P-0048174-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187628226	187630334	Exon 2 of FAT1(-)	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.648_c.2756del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2108	NA	0	2	10	2
P-0009791-T02-IM6	SOMATIC	INPPL1	GAB2	11	11	71940493	78110367	Intron of INPPL1(+):15bp before exon 6	Intron of GAB2(-):18Kb after exon 1	GRCh37	INVERSION	INPPL1 (NM_001567) - GAB2 (NM_080491) rearrangement: c.660-16:INPPL1_c.75+18325:GAB2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {INPPL1:GAB2}	6169874	NA	0	3	9	3
P-0009791-T02-IM6	SOMATIC	STAT3	STAT3	17	8	40476902	110206406	Intron of STAT3(-):38bp before exon 17	IGR: 47Kb before NUDCD1(-)	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(8;17)(q23.1;q21.2)(chr8:g.110206406::chr17:g.40476902)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	16
P-0009791-T02-IM6	SOMATIC	INPP4B	INPP4B	4	4	133235767	143130136	IGR: 276Kb before LINC01256(+)	Exon 13 of INPP4B(-)	GRCh37	INVERSION	INPP4B (NM_001101669) rearrangement: c.880:INPP4B_chr4:g.133235767inv	PRECISE		MANUAL_OK	5to5	-	9894369	NA	0	17	10	22
P-0009791-T02-IM6	SOMATIC	PPP6C	PPP6C	9	9	127916048	133439774	Intron of PPP6C(-):27bp before exon 6	IGR: 13Kb before LOC100272217(-)	GRCh37	INVERSION	PPP6C (NM_002721) rearrangement: c.460-27:PPP6C_chr9:g.133439774inv	PRECISE		MANUAL_OK	5to5	-	5523726	NA	0	5	10	5
P-0033799-T04-IM6	SOMATIC	MALT1	MALT1	18	18	56402552	56433959	Exon 13 of MALT1(+)	IGR: 95Kb before MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1594:MALT1_chr18:g.56433959del	PRECISE		MANUAL_OK	3to5	-	31407	NA	0	3	5	3
P-0034729-T02-IM6	SOMATIC	ASXL1	ASXL1	20	20	30954269	30956814	Exon 2 of ASXL1(+)	Exon 3 of ASXL1(+)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.140_c.144-4del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2545	NA	0	2	10	2
P-0039030-T03-IM6	SOMATIC	MAP3K1	MAP3K1	9	5	24253800	56111607	IGR: 289Kb before IZUMO3(-)	Exon 1 of MAP3K1(+)	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) rearrangement: t(5;9)(q11.2;p21.3)(chr5:g.56111607::chr9:g.24253800)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	25	10	25
P-0040817-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411777	139456928	Exon 9 of NOTCH1(-)	IGR: 15Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1502:NOTCH1_chr9:g.139456928del	IMPPRECISE		MANUAL_OK	3to5	-	45151	NA	1	65	0	70
P-0042796-T02-IM6	SOMATIC	NOTCH4	NOTCH4	19	6	3281852	32166201	Intron of CELF5(+):271bp before exon 7	Exon 26 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;19)(p21.32;p13.3)(chr6:g.32166201::chr19:g.3281852)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	21	10	21
P-0047366-T02-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2490545	52478037	Intron of TNFRSF14(+):638bp after exon 3	IGR: 8Kb before TXNDC12(-)	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.304+638:TNFRSF14_chr1:g.52478037inv	PRECISE		MANUAL_OK	3to3	-	49987492	NA	0	5	10	5
P-0047455-T02-IM6	SOMATIC	TSC2	TSC2	16	16	2119045	2120555	Intron of TSC2(+):1Kb before exon 17	Exon 17 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1717-1412_c.1815del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1510	NA	0	102	10	110
P-0047579-T02-IM6	SOMATIC	APC	APC	5	5	112176871	112190648	Exon 16 of APC(+)	IGR: 6Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.5580:APC_chr5:g.112190648del	PRECISE		MANUAL_OK	3to5	-	13777	NA	0	9	10	9
P-0047762-T01-IM6	SOMATIC	SF3B1	SF3B1	2	2	198257830	198794918	Exon 24 of SF3B1(-)	Intron of PLCL1(+):125Kb after exon 1	GRCh37	DUPLICATION	SF3B1 (NM_012433) rearrangement: c.3622:SF3B1_chr2:g.198794918dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	537088	NA	0	4	10	4
P-0047789-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25462083	25463170	Exon 20 of DNMT3A(-)	Exon 19 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c.2322+1_c.2324del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1087	NA	0	3	6	3
P-0047821-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55240883	55351183	Intron of EGFR(+):66bp after exon 17	IGR: 45Kb before ELDR(-)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2061+66:EGFR_chr7:g.55351183inv	PRECISE		MANUAL_OK	5to5	-	110300	NA	0	10	10	12
P-0047823-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	28791503	29197597	5-UTR of HMBOX1(+):30Kb before coding start	Intron of DUSP4(-):17bp after exon 2	GRCh37	INVERSION	DUSP4 (NM_001394) rearrangement: c.579+18:DUSP4_chr8:g.28791503inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {DUSP4:HMBOX1}	406094	NA	0	97	10	117
P-0047856-T01-IM6	SOMATIC	PARP1	PARP1	1	1	226446443	226551742	Intron of LIN9(-):7Kb after exon 10	Exon 20 of PARP1(-)	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: c.2688:PARP1_chr1:g.226446443inv	PRECISE		MANUAL_OK	3to3	-	105299	NA	0	30	10	33
P-0047859-T01-IM6	SOMATIC	DNMT1	CAMTA1	19	1	10291323	6958300	Intron of DNMT1(-):78bp before exon 4	Intron of CAMTA1(+):73Kb after exon 3	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) - CAMTA1 (NM_015215) rearrangement: t(1;19)(p36.31;p13.2)(chr1:g.6958300::chr19:g.10291323)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {DNMT1:CAMTA1}	0	NA	0	5	10	6
P-0048316-T01-IM6	SOMATIC	MTOR	MTOR	17	1	42940831	11227533	Intron of EFTUD2(-):191bp after exon 15	Exon 29 of MTOR(-)	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;17)(p36.22;q21.31)(chr1:g.11227533::chr17:g.42940831)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0023366-T03-IM6	SOMATIC	FLT4	REL	5	2	180056861	61127034	Intron of FLT4(-):26bp before exon 6	Intron of REL(+):1Kb before exon 4	GRCh37	TRANSLOCATION	FLT4 (NM_182925) - REL (NM_002908) rearrangement: t(2;5)(p16.1;q35.3)(chr2:g.61127034::chr5:g.180056861)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	43	10	45
P-0026375-T04-IM6	SOMATIC	TPM3	NTRK1	1	1	154142521	156844046	Intron of TPM3(-):354bp after exon 8	Intron of NTRK1(+):128bp before exon 9	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion: c.775+355:TPM3_c.1178-129:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2701525	NA	0	92	10	106
P-0047763-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854232	42867176	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):671bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-671:TMPRSS2_c.18+16055:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3012944	NA	0	25	10	26
P-0047794-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52444068	52444879	5-UTR of BAP1(-):8Kb before coding start	Promoter of BAP1(-):10Kb from tx start	GRCh37	DELETION	BAP1 (NM_004656) Rearrangement: c.-174_c.-985del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	811	NA	0	16	0	17
P-0047811-T01-IM6	SOMATIC	MDC1	MDC1	13	6	49335769	30671876	IGR: 55Kb before CYSLTR2(+)	Exon 10 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;13)(p21.33;q14.2)(chr6:g.30671876::chr13:g.49335769)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	90	10	123
P-0047811-T01-IM6	SOMATIC	SOX17	SOX17	8	8	55370998	72866321	Exon 1 of SOX17(+)	5-UTR of LOC100132891(+):102Kb before coding start	GRCh37	DELETION	SOX17 (NM_022454) rearrangement: c.300:SOX17_chr8:g.72866321del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SOX17:LOC100132891}	17495323	NA	0	67	10	70
P-0047818-T01-IM6	SOMATIC	SESN3	SESN3	11	11	45757807	94910850	IGR: 14Kb before LOC100507384(+)	Intron of SESN3(-):32bp after exon 8	GRCh37	DELETION	SESN3 (NM_144665) rearrangement: c.1247+33:SESN3_chr11:g.45757807del	PRECISE		MANUAL_OK	3to5	-	49153043	NA	0	15	10	15
P-0047961-T01-IM6	SOMATIC	YAP1	YAP1	11	11	102098277	108597375	Exon 8 of YAP1(+)	Intron of DDX10(+):3Kb after exon 13	GRCh37	INVERSION	YAP1 (NM_001130145) rearrangement: c.1241:YAP1_chr11:g.108597375inv	PRECISE		MANUAL_OK	5to5	-	6499098	NA	0	10	10	11
P-0048316-T02-IM6	SOMATIC	MTOR	MTOR	17	1	42940831	11227533	Intron of EFTUD2(-):191bp after exon 15	Exon 29 of MTOR(-)	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;17)(p36.22;q21.31)(chr1:g.11227533::chr17:g.42940831)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	14
P-0048316-T02-IM6	SOMATIC	ARHGAP27	MTOR	17	1	43474020	11227534	Intron of ARHGAP27(-):13bp after exon 12	Exon 29 of MTOR(-)	GRCh37	TRANSLOCATION	ARHGAP27 (NM_001282290) - MTOR (NM_004958) fusion: t(1;17)(p36.22;q21.31)(chr1:g.11227534::chr17:g.43474020)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARHGAP27:MTOR}	0	NA	0	6	0	10
P-0007266-T02-IM6	SOMATIC	CLIP1	BRAF	12	7	122767026	140495673	Intron of CLIP1(-):3Kb before exon 21	Intron of BRAF(-):1Kb before exon 8	GRCh37	TRANSLOCATION	CLIP1 (NM_001247997) - BRAF (NM_004333) fusion: t(7;12)(q34;q24.31)(chr7:g.140495673::chr12:g.122767026)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CLIP1:BRAF}	0	NA	0	67	10	70
P-0048241-T01-IM6	SOMATIC	BMP1	MTOR	8	1	22041165	11259667	Intron of BMP1(+):3Kb after exon 8	Exon 27 of MTOR(-)	GRCh37	TRANSLOCATION	BMP1 (NM_006129) - MTOR (NM_004958) rearrangement: t(1;8)(p36.22;p21.3)(chr1:g.11259667::chr8:g.22041165)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {BMP1:MTOR}	0	NA	0	53	10	53
P-0048245-T01-IM6	SOMATIC	RXRA	RXRA	9	9	93395613	137325998	5-UTR of DIRAS2(-):20Kb before coding start	Exon 9 of RXRA(+)	GRCh37	INVERSION	RXRA (NM_002957) rearrangement: c.1186:RXRA_chr9:g.93395613inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DIRAS2:RXRA}	43930385	NA	0	7	0	13
P-0048268-T01-IM6	SOMATIC	EPHB1	EPHB1	3	3	134847905	134884825	Intron of EPHB1(+):4Kb before exon 5	Exon 8 of EPHB1(+)	GRCh37	DELETION	EPHB1 (NM_004441) rearrangement: c.962-3651_c.1601del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	36920	NA	0	3	5	3
P-0048269-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72597392	72827228	3-UTR of LINC01572(-):102Kb after coding stop	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.9353:ZFHX3_chr16:g.72597392del	PRECISE		MANUAL_OK	3to5	-	229836	NA	0	6	9	6
P-0048272-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974761	21976843	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):6Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-5636_c.194-3554del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2082	NA	0	33	10	34
P-0048227-T01-IM6	SOMATIC	DAB1	NOTCH2	1	1	57612167	120465694	Intron of DAB1(-):1Kb before exon 5	Intron of NOTCH2(-):293bp before exon 27	GRCh37	DUPLICATION	DAB1 (NM_021080) - NOTCH2 (NM_024408) rearrangement: c.68-1065:DAB1_c.4860-293:NOTCH2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DAB1:NOTCH2}	62853527	NA	0	5	0	5
P-0048227-T01-IM6	SOMATIC	ARID5B	ADK	10	10	63851926	76262735	Exon 10 of ARID5B(+)	Intron of ADK(+):86Kb before exon 7	GRCh37	DELETION	ARID5B (NM_032199) - ADK (NM_006721) rearrangement: c.2704:ARID5B_c.556-22279:ADKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID5B:ADK}	12410809	NA	0	6	5	6
P-0048227-T01-IM6	SOMATIC	WHSC1L1	COIL	17	8	55026059	38148033	Intron of COIL(-):688bp after exon 4	Exon 17 of WHSC1L1(-)	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) - COIL (NM_004645) rearrangement: t(8;17)(p11.23;q22)(chr8:g.38148033::chr17:g.55026059)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {WHSC1L1:COIL}	0	NA	0	75	10	76
P-0047008-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39937324	42868342	Intron of ERG(-):10Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+1704:TMPRSS2_c.39+10262:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2931018	NA	0	74	10	79
P-0048251-T01-IM6	SOMATIC	TRMT1L	FH	1	1	185113306	241663571	Intron of TRMT1L(-):145bp before exon 6	Intron of FH(-):165bp after exon 9	GRCh37	INVERSION	FH (NM_000143) rearrangement: c.1390+166:FH_chr1:g.185113306inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	56550265	NA	0	14	10	18
P-0048251-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59870929	69421263	Intron of BRIP1(-):28bp after exon 10	IGR: 327Kb before CASC17(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.1473+29:BRIP1_chr17:g.69421263inv	PRECISE		MANUAL_OK	5to5	-	9550334	NA	0	49	10	50
P-0048320-T01-IM6	SOMATIC	MDM4	EFCAB6	22	1	44039483	204516048	Intron of EFCAB6(-):8Kb before exon 18	Intron of MDM4(+):43bp after exon 10	GRCh37	TRANSLOCATION	MDM4 (NM_002393) - EFCAB6 (NM_022785) rearrangement: t(1;22)(q32.1;q13.2)(chr1:g.204516048::chr22:g.44039483)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MDM4:EFCAB6}	0	NA	0	23	10	23
P-0048222-T01-IM6	SOMATIC	KMT2A	KMT2A	11	5	118375147	175112794	Exon 27 of KMT2A(+)	3-UTR of HRH2(+):3Kb after coding stop	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(5;11)(q35.2;q23.3)(chr5:g.175112794::chr11:g.118375147)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	33	10	30
P-0048222-T01-IM6	SOMATIC	ATR	MSH4	3	1	142188875	76363501	Intron of ATR(-):52bp after exon 37	Intron of MSH4(+):90bp before exon 18	GRCh37	TRANSLOCATION	ATR (NM_001184) - MSH4 (NM_002440) rearrangement: t(1;3)(p31.1;q23)(chr1:g.76363501::chr3:g.142188875)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ATR:MSH4}	0	NA	0	9	0	7
P-0121470-T02-IM6	SOMATIC	CIC	CIC	19	19	10587493	42795197	IGR: 9Kb before KEAP1(-)	Exon 10 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.2277:CIC_chr19:g.10587493del	PRECISE		MANUAL_OK	3to5	-	32207704	NA	0	140	10	151
P-0028732-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11103658	11151882	Intron of SMARCA4(+):2Kb after exon 8	Intron of SMARCA4(+):100bp before exon 30	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1419+1659_c.4171-101del	PRECISE		MANUAL_OK	3to5	Deletion of 21 exons : in frame	48224	NA	0	44	10	45
P-0040381-T02-IM6	SOMATIC	PIK3R2	PIK3R2	19	4	18266741	116464020	Exon 2 of PIK3R2(+)	IGR: 715Kb before NDST4(-)	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(4;19)(q26;p13.11)(chr4:g.116464020::chr19:g.18266741)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	36	10	36
P-0047990-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683742	32417114	Intron of EWSR1(+):619bp after exon 8	Intron of WT1(-):688bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417114::chr22:g.29683742)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	114	10	123
P-0047991-T02-IM6	SOMATIC	NCOA4	RET	10	10	43611538	51583476	Intron of RET(+):493bp before exon 12	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET  (NM_020975) fusion: c.762+537:NCOA4_c.2137-494:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7971938	NA	0	163	10	170
P-0048290-T01-IM6	SOMATIC	TP53	TP53	17	17	7042904	7579741	IGR: 34Kb before ASGR1(-)	Intron of TP53(-):20bp before exon 3	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.75-20:TP53_chr17:g.7042904inv	PRECISE		MANUAL_OK	5to5	-	536837	NA	0	105	10	121
P-0048290-T01-IM6	SOMATIC	AURKB	AURKB	17	17	7118036	8109650	Intron of DLG4(-):4Kb after exon 3	Intron of AURKB(-):158bp after exon 7	GRCh37	INVERSION	AURKB (NM_004217) rearrangement: c.686+159:AURKB_chr17:g.7118036inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	991614	NA	0	21	10	21
P-0048293-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49439352	49440420	Intron of KMT2D(-):350bp after exon 18	Exon 15 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4390_c.4741+351del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1068	NA	0	18	10	20
P-0048294-T01-IM6	SOMATIC	RABGAP1	FUBP1	9	1	125722049	78434833	Intron of RABGAP1(+):3Kb after exon 2	Intron of FUBP1(-):775bp after exon 2	GRCh37	TRANSLOCATION	RABGAP1 (NM_012197) - FUBP1 (NM_003902) rearrangement: t(1;9)(p31.1;q33.2)(chr1:g.78434833::chr9:g.125722049)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RABGAP1:FUBP1}	0	NA	0	12	0	12
P-0048296-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968809	21986857	Intron of CDKN2A(-):568bp before exon 3	Intron of CDKN2A(-):7Kb after exon 1	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-568_c.193+7281del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	18048	NA	0	43	10	43
P-0048305-T01-IM6	SOMATIC	MAPK3	GDPD3	16	16	30118006	30128953	Intron of GDPD3(-):2Kb after exon 9	Intron of MAPK3(-):37bp after exon 5	GRCh37	DELETION	MAPK3 (NM_002746) - GDPD3 (NM_024307) rearrangement: c.775+38:MAPK3_c.819+1528:GDPD3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MAPK3:GDPD3}	10947	NA	0	5	0	5
P-0048306-T01-IM6	SOMATIC	RER1	ARID1A	1	1	2330569	27057763	Intron of RER1(+):284bp before exon 4	Exon 3 of ARID1A(+)	GRCh37	DELETION	RER1 (NM_007033) - ARID1A (NM_006015) rearrangement: c.187-285:RER1_c.1471:ARID1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RER1:ARID1A}	24727194	NA	0	124	10	133
P-0048306-T02-IM6	SOMATIC	RER1	ARID1A	1	1	2330569	27057763	Intron of RER1(+):284bp before exon 4	Exon 3 of ARID1A(+)	GRCh37	DELETION	RER1 (NM_007033) - ARID1A (NM_006015) rearrangement: c.187-285:RER1_c.1471:ARID1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RER1:ARID1A}	24727194	NA	0	140	10	150
P-0048308-T01-IM6	SOMATIC	SRSF2	SRSF2	17	17	74733195	81010833	Exon 1 of SRSF2(-)	Promoter of B3GNTL1(-):109Kb from tx start	GRCh37	DELETION	SRSF2 (NM_003016) rearrangement: c.48:SRSF2_chr17:g.81010833del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {B3GNTL1:SRSF2}	6277638	NA	0	188	0	210
P-0048317-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38060170	38061233	3-UTR of FOXA1(-):399bp after coding stop	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.756:FOXA1_chr14:g.38060170del	PRECISE		MANUAL_OK	3to5	-	1063	NA	0	5	10	5
P-0048353-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41122482	41202998	Intron of PTGES3L(-):123bp before exon 5	Intron of BRCA1(-):81bp after exon 20	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.5332+82:BRCA1_chr17:g.41122482del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BRCA1:PTGES3L}	80516	NA	0	14	10	15
P-0048354-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	8	139403489	6125999	Exon 19 of NOTCH1(-)	IGR: 135Kb before LOC100287015(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(8;9)(p23.2;q34.3)(chr8:g.6125999::chr9:g.139403489)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	13	0	26
P-0048355-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1808721	6711492	Intron of FGFR3(+):60bp after exon 17	5-UTR of MRFAP1L1(-):520bp before coding start	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.2274+60:FGFR3_chr4:g.6711492inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {FGFR3:MRFAP1L1}	4902771	NA	0	44	10	44
P-0048357-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42867694	41638942	Intron of TMPRSS2(-):1Kb before exon 3	IGR: 34Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41638942::chr21:g.42867694)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	73	10	73
P-0048359-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29683596	32417800	Intron of EWSR1(+):473bp after exon 8	Intron of WT1(-):2bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417800::chr22:g.29683596)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	50	10	46
P-0048373-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39728672	39750690	Intron of TOP1(+):23bp before exon 12	Exon 20 of TOP1(+)	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.976-24_c.2090del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22018	NA	0	5	9	6
P-0048376-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15366302	15382989	Exon 10 of BRD4(-)	Intron of BRD4(-):636bp after exon 2	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.285+637_c.1853inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	16687	NA	0	35	10	42
P-0048388-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55147739	55222577	Intron of EGFR(+):61Kb after exon 1	Intron of EGFR(+):732bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+60681_c.889+732del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	74838	NA	0	42	10	71
P-0048392-T01-IM6	SOMATIC	MIR1273E	FH	1	1	240716629	241680684	5-UTR of MIR1273E(+):196Kb before coding start	Intron of FH(-):68bp before exon 2	GRCh37	INVERSION	FH (NM_000143) rearrangement: c.133-68:FH_chr1:g.240716629inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MIR1273E:FH}	964055	NA	0	17	10	16
P-0048407-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56486972	56512178	Intron of ERBB3(+):112bp after exon 11	5-UTR of ZC3H10(+):2Kb before coding start	GRCh37	DELETION	ERBB3 (NM_001982) rearrangement: c.1274+112:ERBB3_chr12:g.56512178del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ERBB3:ZC3H10}	25206	NA	0	11	10	11
P-0048408-T01-IM6	SOMATIC	MGA	MGA	15	5	41989094	30242172	Exon 3 of MGA(+)	IGR: 862Kb before LOC101929681(-)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(5;15)(p13.3;q15.1)(chr5:g.30242172::chr15:g.41989094)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	29	0	30
P-0048410-T01-IM6	SOMATIC	RB1	RB1	13	4	48947685	60168904	Intron of RB1(+):57bp after exon 12	IGR: 2Mb before LOC101928851(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(4;13)(q13.1;q14.2)(chr4:g.60168904::chr13:g.48947685)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	18
P-0048434-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	92988526	112924299	IGR: 108Kb before C12orf74(+)	Exon 11 of PTPN11(+)	GRCh37	DELETION	PTPN11 (NM_002834) rearrangement: c.1245:PTPN11_chr12:g.92988526del	PRECISE		MANUAL_OK	3to5	-	19935773	NA	0	22	10	22
P-0048473-T01-IM6	SOMATIC	NSD1	NSD1	15	5	102521137	176637022	Promoter of DDX11L9(-):4Kb from tx start	Exon 5 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(5;15)(q35.3;q26.3)(chr5:g.176637022::chr15:g.102521137)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	33	10	40
P-0048473-T01-IM6	SOMATIC	STAT3	STAT3	17	3	40474483	39726709	Exon 21 of STAT3(-)	IGR: 124Kb before MYRIP(+)	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(3;17)(p22.1;q21.2)(chr3:g.39726709::chr17:g.40474483)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	11
P-0048473-T01-IM6	SOMATIC	TAP2	TAP2	6	6	32797452	32938006	Intron of TAP2(-):139bp before exon 11	5-UTR of BRD2(+):3Kb before coding start	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: c.1796-139:TAP2_chr6:g.32938006inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {BRD2:TAP2}	140554	NA	0	17	10	17
P-0048484-T01-IM6	SOMATIC	NOTCH4	NOTCH4	13	6	27435738	32171958	IGR: 106Kb before GPR12(-)	Exon 19 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;13)(p21.32;q12.13)(chr6:g.32171958::chr13:g.27435738)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	29
P-0048484-T01-IM6	SOMATIC	STK19	MRPS31	13	6	41339661	31948577	Intron of MRPS31(-):1Kb after exon 2	Exon 7 of STK19(+)	GRCh37	TRANSLOCATION	STK19 (NM_004197) - MRPS31 (NM_005830) rearrangement: t(6;13)(p21.33;q14.11)(chr6:g.31948577::chr13:g.41339661)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {STK19:MRPS31}	0	NA	0	37	10	73
P-0048484-T01-IM6	SOMATIC	NSD1	NSD1	6	5	31617932	176562282	Intron of BAG6(-):528bp before exon 3	Exon 2 of NSD1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(5;6)(q35.2;p21.33)(chr5:g.176562282::chr6:g.31617932)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	61	10	62
P-0028057-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	212587061	212673551	Intron of ERBB4(-):56bp after exon 7	Intron of ERBB4(-):21Kb before exon 4	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.422-20667_c.883+57dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	86490	NA	0	9	10	17
P-0047470-T02-IM6	SOMATIC	KMT2C	PRKAG2	7	7	151431680	151847911	Intron of PRKAG2(-):47Kb after exon 3	Intron of KMT2C(-):73bp after exon 51	GRCh37	DELETION	KMT2C (NM_170606) - PRKAG2 (NM_016203) rearrangement: c.12774+74:KMT2C_c.466+46558:PRKAG2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KMT2C:PRKAG2}	416231	NA	0	6	0	7
P-0048452-T01-IM6	SOMATIC	AURKA	AURKA	21	20	46653413	54958225	IGR: 30Kb before POFUT2(-)	Exon 5 of AURKA(-)	GRCh37	TRANSLOCATION	AURKA (NM_003600) rearrangement: t(20;21)(q13.2;q22.3)(chr20:g.54958225::chr21:g.46653413)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	6	5
P-0048454-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15368247	15383895	Intron of BRD4(-):263bp before exon 8	Exon 2 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.16_c.1342-263del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15648	NA	0	5	10	7
P-0048454-T01-IM6	SOMATIC	EPHB1	EPHB1	3	3	134960525	134967183	Intron of EPHB1(+):386bp after exon 13	Exon 14 of EPHB1(+)	GRCh37	DELETION	EPHB1 (NM_004441) rearrangement: c.2496+386_c.2522del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6658	NA	0	20	10	21
P-0048489-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	10922887	11169307	Intron of DNM2(+):52bp before exon 14	Intron of SMARCA4(+):156bp before exon 32	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.4534-157:SMARCA4_chr19:g.10922887inv	IMPPRECISE		MANUAL_OK	5to5	-	246420	NA	0	12	0	12
P-0048489-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11122778	11129453	Intron of SMARCA4(+):846bp before exon 16	Intron of SMARCA4(+):179bp before exon 17	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.2275-847_c.2439-180inv	PRECISE		MANUAL_OK	5to5	-	6675	NA	0	30	10	31
P-0048490-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39951297	42878472	3-UTR of ERG(-):82Kb after coding stop	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+1405:TMPRRS2_c.-47-3626:ERGdel	PRECISE		MANUAL_OK	3to5	-	2927175	NA	0	265	10	287
P-0048497-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67569643	67792012	Intron of PIK3R1(+):123bp before exon 4	IGR: 204Kb before PIK3R1(+)	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement: c.428-124:PIK3R1_chr5:g.67792012dup	PRECISE		MANUAL_OK	5to3	-	222369	NA	0	26	10	26
P-0048497-T01-IM6	SOMATIC	SMS	EWSR1	X	22	21975542	29685358	Intron of SMS(+):10Kb before exon 2	Intron of EWSR1(+):583bp after exon 9	GRCh37	TRANSLOCATION	SMS (NM_004595) - EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.11)(chr22:g.29685358::chrX:g.21975542)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SMS:EWSR1}	0	NA	0	94	10	128
P-0048525-T01-IM6	SOMATIC	YAP1	YAP1	11	11	91175282	102076519	IGR: 886Kb before MIR4490(-)	Intron of YAP1(+):104bp before exon 5	GRCh37	DELETION	YAP1 (NM_001130145) rearrangement: c.803-105:YAP1_chr11:g.91175282del	PRECISE		MANUAL_OK	3to5	-	10901237	NA	0	14	10	16
P-0048530-T01-IM6	SOMATIC	DERA	GLI1	12	12	16116098	57865604	Intron of DERA(+):217bp after exon 5	Exon 12 of GLI1(+)	GRCh37	DELETION	DERA (NM_015954) - GLI1 (NM_005269) rearrangement: c.508+217:DERA_c.3081:GLI1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DERA:GLI1}	41749506	NA	0	33	0	33
P-0048531-T01-IM6	SOMATIC	YAP1	MAML2	11	11	96041282	101981633	Intron of MAML2(-):33Kb after exon 1	Exon 1 of YAP1(+)	GRCh37	INVERSION	YAP1 (NM_001130145) - MAML2 (NM_032427) rearrangement: c.54:YAP1_c.513+33265:MAML2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {YAP1:MAML2}	5940351	NA	0	9	10	9
P-0048586-T01-IM6	SOMATIC	CSDE1	CSDE1	14	1	45909793	115280412	IGR: 237Kb before MIS18BP1(-)	Intron of CSDE1(-):171bp after exon 5	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;14)(p13.2;q21.2)(chr1:g.115280412::chr14:g.45909793)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0048586-T01-IM6	SOMATIC	PHOX2B	PHOX2B	4	4	41740029	41748211	IGR: 6Kb before PHOX2B(-)	Exon 3 of PHOX2B(-)	GRCh37	DELETION	PHOX2B (NM_003924) rearrangement: c.558:PHOX2B_chr4:g.41740029del	PRECISE		MANUAL_OK	3to5	-	8182	NA	0	2	5	2
P-0048587-T01-IM6	SOMATIC	RET	RET	10	10	43608878	43610422	Intron of RET(+):125bp before exon 10	Intron of RET(+):238bp after exon 11	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.1760-126_c.2136+238inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1544	NA	0	2	7	2
P-0048593-T01-IM6	SOMATIC	SLX4	SLX4	17	16	1815214	3652199	IGR: 23Kb before RTN4RL1(-)	Exon 4 of SLX4(-)	GRCh37	TRANSLOCATION	SLX4 (NM_032444) rearrangement: t(16;17)(p13.3;p13.3)(chr16:g.3652199::chr17:g.1815214)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	34	10	34
P-0048593-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15355307	15425839	Exon 13 of BRD4(-)	IGR: 38Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2316:BRD4_chr19:g.15425839del	PRECISE		MANUAL_OK	3to5	-	70532	NA	0	12	10	17
P-0048593-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111805979	111884870	Intron of ACOXL(+):815bp before exon 16	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.1370-816:ACOXL_c.394+3154:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ACOXL:BCL2L11}	78891	NA	0	10	10	10
P-0012673-T02-IM6	SOMATIC	SMAD4	CARD8	19	18	48739416	48575787	Intron of CARD8(-):2Kb before exon 6	Intron of SMAD4(+):93bp after exon 4	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) - CARD8 (NM_001184901) rearrangement: t(18;19)(q21.2;q13.33)(chr18:g.48575787::chr19:g.48739416)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SMAD4:CARD8}	0	NA	0	12	0	12
P-0040504-T02-IM6	SOMATIC	SLIT2	ETV6	12	4	12034059	20374490	Intron of ETV6(+):3Kb before exon 6	Intron of SLIT2(+):95Kb before exon 5	GRCh37	TRANSLOCATION	SLIT2 (NM_004787) - ETV6 (NM_001987) rearrangement: t(4;12)(p15.31;p13.2)(chr4:g.20374490::chr12:g.12034059)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SLIT2:ETV6}	0	NA	0	51	10	52
P-0043891-T04-IM6	SOMATIC	ELF3	ELF3	1	1	201980127	201982802	5-UTR of ELF3(+):137bp before coding start	Intron of ELF3(+):154bp before exon 8	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.806-155:ELF3_chr1:g.201980127del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2675	NA	0	18	10	19
P-0043891-T04-IM6	SOMATIC	PMS1	PMS1	2	2	190530640	190660511	5-UTR of ASNSD1(+):218bp before coding start	Exon 3 of PMS1(+)	GRCh37	DELETION	PMS1 (NM_000534) rearrangement: c.149:PMS1_chr2:g.190530640del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ASNSD1:PMS1}	129871	NA	0	10	10	10
P-0043891-T04-IM6	SOMATIC	FAT1	FAT1	4	1	187627676	40018211	Intron of FAT1(-):40bp after exon 2	3-UTR of PPIEL(-):7Kb after coding stop	GRCh37	TRANSLOCATION	FAT1 (NM_005245) rearrangement: t(1;4)(p34.3;q35.2)(chr1:g.40018211::chr4:g.187627676)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0043891-T05-IM6	SOMATIC	ELF3	ELF3	1	1	201980127	201982802	5-UTR of ELF3(+):137bp before coding start	Intron of ELF3(+):154bp before exon 8	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.806-155:ELF3_chr1:g.201980127del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2675	NA	0	9	10	9
P-0048500-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187531056	187868727	Exon 15 of FAT1(-)	IGR: 357Kb before LOC339975(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.9967:FAT1_chr4:g.187868727del	PRECISE		MANUAL_OK	3to5	-	337671	NA	0	40	10	41
P-0048501-T01-IM6	SOMATIC	CIC	CYP4F22	19	19	15649127	42788942	Intron of CYP4F22(+):323bp after exon 7	Intron of CIC(+):19bp after exon 1	GRCh37	DUPLICATION	CIC (NM_015125) - CYP4F22 (NM_173483) rearrangement: c.67+19:CIC_c.671+323:CYP4F22dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CIC:CYP4F22}	27139815	NA	0	4	0	9
P-0048502-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212577042	212909364	Intron of ERBB4(-):141bp before exon 9	Intron of ERBB4(-):80Kb after exon 2	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.234+80113_c.998-141del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	332322	NA	0	9	0	9
P-0048507-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896265	42867504	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):999bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-999:TMPRSS2_c.39+51321:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2971239	NA	0	15	10	15
P-0048510-T01-IM6	SOMATIC	MGA	MGA	15	15	41775137	42050071	3-UTR of RTF1(+):66Kb after coding stop	Intron of MGA(+):34bp after exon 19	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.7191+34:MGA_chr15:g.41775137inv	PRECISE		MANUAL_OK	3to3	-	274934	NA	0	38	10	38
P-0048510-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39989387	42870264	3-UTR of ERG(-):44Kb after coding stop	Intron of TMPRSS2(-):148bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-148:TMPRSS2_c.-149-32518:ERGdel	PRECISE		MANUAL_OK	3to5	-	2880877	NA	0	76	10	78
P-0048538-T01-IM6	SOMATIC	RET	RET	10	10	43605418	43608200	Intron of RET(+):740bp after exon 6	Intron of RET(+):100bp before exon 9	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.1263+740_c.1649-101inv	PRECISE		MANUAL_OK	5to5	-	2782	NA	0	4	10	5
P-0048551-T01-IM6	SOMATIC	APC	SRP19	5	5	112178569	112200883	Exon 16 of APC(+)	Intron of SRP19(+):454bp after exon 4	GRCh37	DELETION	APC (NM_000038) - SRP19 (NM_001204199) rearrangement: c.7278:APC_c.301+454:SRP19del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	22314	NA	0	4	4	4
P-0048554-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115110010	117884190	Exon 8 of TBX3(-)	IGR: 7Kb before KSR2(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.1868:TBX3_chr12:g.117884190del	PRECISE		MANUAL_OK	3to5	-	2774180	NA	0	42	10	42
P-0048558-T01-IM6	SOMATIC	CD79A	RPS19	19	19	42365607	42383289	Intron of RPS19(+):326bp after exon 3	Exon 2 of CD79A(+)	GRCh37	DUPLICATION	CD79A (NM_001783) - RPS19 (NM_001022) rearrangement: c.309:CD79A_c.172+326:RPS19dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CD79A:RPS19}	17682	NA	0	72	10	75
P-0048608-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32914685	38945399	Exon 11 of BRCA2(+)	IGR: 21Kb before UFM1(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.6193:BRCA2_chr13:g.38945399del	PRECISE		MANUAL_OK	3to5	-	6030714	NA	0	10	10	11
P-0048610-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874432	42866183	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):99bp after exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.349+100:TMPRSS2_c.40-56888:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2991751	NA	0	20	10	20
P-0048611-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611237	61652942	Intron of RET(+):794bp before exon 12	Intron of CCDC6(-):13Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+12938:CCDC6_c.2137-795:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18041705	NA	0	39	10	47
P-0048613-T01-IM6	SOMATIC	ERBB3	ERBB3	20	12	19043904	56490271	IGR: 149Kb before SLC24A3(+)	Intron of ERBB3(+):15bp before exon 18	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(12;20)(q13.2;p11.23)(chr12:g.56490271::chr20:g.19043904)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	17
P-0035247-T03-IM6	SOMATIC	NCOR1	NCOR1	17	17	16039436	16041366	Intron of NCOR1(-):1Kb after exon 14	Intron of NCOR1(-):105bp after exon 13	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.1407+106_c.1509+1189inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1930	NA	0	13	10	13
P-0048437-T01-IM6	SOMATIC	NKX2	NKX2-1	14	14	35725220	36988393	Intron of KIAA0391(+):11Kb before exon 4	Exon 2 of NKX2-1(-)	GRCh37	INVERSION	NKX2-1 (NM_001079668) - KIAA0391 (NM_014672) rearrangement: c.260:NKX2-1_c.1276-10713:KIAA0391inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NKX2-1:KIAA0391}	1263173	NA	0	17	10	63
P-0048437-T01-IM6	SOMATIC	IKZF1	IKZF1	7	7	25970278	50468073	IGR: 19Kb before MIR148A(-)	Exon 8 of IKZF1(+)	GRCh37	INVERSION	IKZF1 (NM_006060) Rearrangement: c.1312:IKZF1_chr7:g.25970278inv	IMPPRECISE		MANUAL_OK	3to3	-	24497795	NA	0	9	0	9
P-0048597-T01-IM6	SOMATIC	TMPRSS2 exon 2 with ERG exon 4	TMPRSS2 exon 2 with ERG exon 4	21	21	39882599	42869694	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):351bp after exon 2	GRCh37	DELETION	TMPRSS2 exon 2 with ERG exon 4	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2987095	NA	0	28	10	28
P-0044541-T04-IM6	SOMATIC	C11orf95	RELA	11	11	63532059	65430161	Exon 4 of C11orf95(-)	Intron of RELA(-):135bp after exon 1	GRCh37	DUPLICATION	C11orf95 (NM_001144936)  - RELA (NM_021975) fusion : c.1036:C11orf95_c.7+136:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C11orf95:RELA}	1898102	NA	0	50	10	52
P-0048504-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42866665	41633928	Intron of TMPRSS2(-):160bp before exon 3	IGR: 29Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) fusion: t(17;21)(q21.31;q22.3)(chr17:g.41633928::chr21:g.42866665)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0048621-T01-IM6	SOMATIC	ALK	ALK	2	2	16609882	29450099	IGR: 121Kb before FAM49A(-)	Intron of ALK(-):159bp before exon 18	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.2915-159:ALK_chr2:g.16609882del	PRECISE		MANUAL_OK	3to5	-	12840217	NA	0	6	9	6
P-0048622-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33735782	33793165	IGR: 36Kb before SLC7A10(-)	Exon 1 of CEBPA(-)	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.156:CEBPA_chr19:g.33735782inv	PRECISE		MANUAL_OK	3to3	-	57383	NA	0	36	10	37
P-0048624-T01-IM6	SOMATIC	ETV6	ETV6	19	12	14528519	12020310	3-UTR of DDX39A(-):2Kb after coding stop	Intron of ETV6(+):2Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;19)(p13.2;p13.12)(chr12:g.12020310::chr19:g.14528519)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	37	10	38
P-0048625-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151827867	151836782	IGR: 4Kb before KMT2C(-)	Exon 56 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.14438:KMT2C_chr7:g.151827867del	PRECISE		MANUAL_OK	3to5	-	8915	NA	0	4	5	4
P-0048668-T01-IM6	SOMATIC	RAPGEF1	RXRA	9	9	134551919	137300931	Intron of RAPGEF1(-):26Kb before exon 2	Exon 4 of RXRA(+)	GRCh37	INVERSION	RAPGEF1 (NM_198679) - RXRA (NM_002957) rearrangement: c.65-25583:RAPGEF1_c.576:RXRAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RAPGEF1:RXRA}	2749012	NA	0	259	10	388
P-0048671-T01-IM6	SOMATIC	CD74	ROS1	6	5	117647250	149783869	Intron of ROS1(-):136bp after exon 33	Intron of CD74(-):373bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783869::chr6:g.117647250)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	153	10	156
P-0048688-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55134036	55139307	Intron of PDGFRA(+):128bp after exon 7	Intron of PDGFRA(+):396bp before exon 10	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1121+128_c.1365-397del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5271	NA	0	15	10	16
P-0048688-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67544546	67591145	Intron of PIK3R1(+):22Kb after exon 2	Exon 13 of PIK3R1(+)	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement: c.334+21709_c.1738dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	46599	NA	0	15	10	15
P-0048690-T01-IM6	SOMATIC	INHBA	INHBA	7	7	41729477	41772824	Exon 3 of INHBA(-)	5-UTR of INHBA-AS1(+):46Kb before coding start	GRCh37	INVERSION	INHBA (NM_002192) rearrangement: c.1052:INHBA_chr7:g.41772824inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {INHBA:INHBA-AS1}	43347	NA	0	25	0	25
P-0048692-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	2301777	246490520	Intron of MORN1(-):2Kb after exon 8	Exon 5 of SMYD3(-)	GRCh37	INVERSION	SMYD3 (NM_001167740) rearrangement: c.514:SMYD3_chr1:g.2301777inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	244188743	NA	0	21	10	24
P-0048098-T02-IM6	SOMATIC	ARID1A	ARID1A	5	1	175351720	27101346	IGR: 35Kb before THOC3(-)	Exon 18 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;5)(p36.11;q35.2)(chr1:g.27101346::chr5:g.175351720)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	12
P-0048650-T01-IM6	SOMATIC	ERCC2	NKPD1	19	19	45662041	45864974	Exon 2 of NKPD1(-)	Intron of ERCC2(-):74bp before exon 12	GRCh37	DELETION	ERCC2 (NM_000400) - NKPD1 (NM_198478) rearrangement: c.1119-74:ERCC2_c.409:NKPD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ERCC2:NKPD1}	202933	NA	0	8	10	8
P-0048655-T01-IM6	SOMATIC	AGXT2	TERT	5	5	1255522	35036028	Exon 14 of TERT(-)	Intron of AGXT2(-):607bp before exon 5	GRCh37	DELETION	AGXT2 (NM_031900) - TERT (NM_198253) rearrangement: c.487-607:AGXT2_c.3037:TERTdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AGXT2:TERT}	33780506	NA	0	13	10	15
P-0048656-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57486417	57492710	Intron of NAB2(+):53bp after exon 3	Intron of STAT6(-):25bp before exon 18	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1091+53:NAB2_c.1956-25:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	6293	NA	0	112	10	112
P-0048657-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67477059	67480435	Intron of SMAD3(+):5bp before exon 7	Intron of SMAD3(+):588bp after exon 8	GRCh37	DUPLICATION	SMAD3 (NM_005902) rearrangement: c.872-6_c.1154+588dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	3376	NA	0	6	10	7
P-0048660-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57749444	57753102	Promoter of PLK2(-):365bp from tx start	Exon 7 of PLK2(-)	GRCh37	DELETION	PLK2 (NM_006622) rearrangement: c.914:PLK2_chr5:g.57749444del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3658	NA	0	32	10	35
P-0048696-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190723155	190732689	Intron of PMS1(+):3Kb after exon 9	Intron of PMS1(+):34bp after exon 11	GRCh37	DUPLICATION	PMS1 (NM_000534) rearrangement: c.1856+3301_c.2473+34dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	9534	NA	0	15	10	15
P-0048701-T01-IM6	SOMATIC	STK11	STK11	19	19	1206978	1209525	Exon 1 of STK11(+)	Intron of STK11(+):2Kb after exon 1	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.66_c.290+2323del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2547	NA	0	27	10	28
P-0048743-T01-IM6	SOMATIC	IDH2	IDH2	15	14	90630349	41391477	Exon 7 of IDH2(-)	IGR: 32Kb before LOC644919(+)	GRCh37	TRANSLOCATION	IDH2 (NM_002168) rearrangement: t(14;15)(q21.1;q26.1)(chr14:g.41391477::chr15:g.90630349)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	15
P-0048743-T01-IM6	SOMATIC	NF2	NF2	22	22	30010167	30051502	Intron of NF2(+):10Kb after exon 1	Intron of NF2(+):80bp before exon 6	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.114+10066_c.517-81del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	41335	NA	0	21	0	22
P-0048750-T01-IM6	SOMATIC	MGA	MGA	15	3	42042391	29948992	Exon 17 of MGA(+)	Intron of RBMS3(+):8Kb after exon 10	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(3;15)(p24.1;q15.1)(chr3:g.29948992::chr15:g.42042391)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	5
P-0009122-T05-IM6	SOMATIC	FOXA1	FOXA1	14	14	38058973	38060764	3-UTR of FOXA1(-):2Kb after coding stop	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1225:FOXA1_chr14:g.38058973del	PRECISE		MANUAL_OK	3to5	-	1791	NA	0	3	5	3
P-0012045-T03-IM6	SOMATIC	BRAF	BRAF	7	7	140487536	141759418	Intron of BRAF(-):152bp before exon 9	Intron of MGAM(+):18bp after exon 32	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1141-152:BRAF_chr7:g.141759418del	PRECISE		MANUAL_OK	3to5	-	1271882	NA	0	26	10	28
P-0012273-T03-IM6	SOMATIC	ANKRD11	ANKRD11	16	13	89349157	29376791	Exon 9 of ANKRD11(-)	IGR: 103Kb before SLC46A3(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(13;16)(q12.3;q24.3)(chr13:g.29376791::chr16:g.89349157)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	10	10
P-0022642-T04-IM6	SOMATIC	CCDC6	RET	10	10	43611768	61626673	Intron of RET(+):263bp before exon 12	Intron of CCDC6(-):14Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-14213:CCDC6_c.2137-264:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18014905	NA	0	58	10	71
P-0045906-T02-IM6	SOMATIC	TP53	TP53	17	5	7578033	25413095	Intron of TP53(-):143bp after exon 6	IGR: 578Kb before LOC340107(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(5;17)(p14.1;p13.1)(chr5:g.25413095::chr17:g.7578033)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	15
P-0047505-T02-IM6	SOMATIC	SPEN	DDI2	1	1	15957264	16260031	Intron of DDI2(+):208bp after exon 3	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - DDI2 (NM_032341) rearrangement: c.7296:SPEN_c.505+208:DDI2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:DDI2}	302767	NA	0	56	10	57
P-0047505-T02-IM6	SOMATIC	TP53	TP53	17	17	7560480	7578672	3-UTR of ATP1B2(+):6Kb after coding stop	Intron of TP53(-):118bp before exon 5	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.376-118:TP53_chr17:g.7560480inv	PRECISE		MANUAL_OK	3to3	-	18192	NA	0	42	10	41
P-0048417-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29685071	128662931	Intron of EWSR1(+):296bp after exon 9	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128662931::chr22:g.29685071)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	147	10	156
P-0048596-T01-IM6	SOMATIC	RARA	RARA	20	17	39591760	38512345	IGR: 66Kb before TOP1(+)	Exon 9 of RARA(+)	GRCh37	TRANSLOCATION	RARA (NM_000964) rearrangement: t(17;20)(q21.2;q12)(chr17:g.38512345::chr20:g.39591760)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	63	10	63
P-0048596-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30713903	30714913	Exon 5 of TGFBR2(+)	Intron of TGFBR2(+):683bp before exon 6	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.1303_c.1330-684del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1010	NA	0	34	0	38
P-0048702-T01-IM6	SOMATIC	STIP1	RPS6KA4	11	11	63967033	64137333	Intron of STIP1(+):378bp before exon 9	Exon 14 of RPS6KA4(+)	GRCh37	DELETION	STIP1 (NM_006819) - RPS6KA4 (NM_003942) rearrangement: c.1024-379:STIP1_c.1765:RPS6KA4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STIP1:RPS6KA4}	170300	NA	0	58	10	68
P-0048708-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39907669	42867957	Intron of ERG(-):40Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1452:TMPRSS2_c.39+39917:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2960288	NA	0	26	10	26
P-0048709-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11307870	11492685	Intron of MTOR(-):5bp after exon 7	IGR: 47Kb before PTCHD2(+)	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.1116+6:MTOR_chr1:g.11492685inv	PRECISE		MANUAL_OK	5to5	-	184815	NA	0	5	7	5
P-0048711-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	8438526	36939232	Intron of RERE(-):12Kb before exon 13	Intron of CSF3R(-):9bp before exon 6	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.486-9:CSF3R_chr1:g.8438526inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	28500706	NA	0	8	10	8
P-0048711-T01-IM6	SOMATIC	FGF19	CPT1A	11	11	68572320	69518465	Intron of CPT1A(-):751bp before exon 5	Exon 1 of FGF19(-)	GRCh37	DELETION	FGF19 (NM_005117) - CPT1A (NM_001876) rearrangement: c.180:FGF19_c.454-751:CPT1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGF19:CPT1A}	946145	NA	0	9	10	9
P-0048711-T01-IM6	SOMATIC	MTOR	MTOR	2	1	184784500	11181415	IGR: 679Kb before ZNF804A(+)	Exon 49 of MTOR(-)	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;2)(p36.22;q32.1)(chr1:g.11181415::chr2:g.184784500)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	10	6
P-0048727-T01-IM6	SOMATIC	BRAF	BRAF	7	7	111854942	140493154	Intron of ZNF277(+):8Kb after exon 1	Intron of BRAF(-):953bp after exon 8	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1140+954:BRAF_chr7:g.111854942del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	28638212	NA	0	36	10	39
P-0048755-T01-IM6	SOMATIC	INSR	INSR	19	19	5461998	7150369	IGR: 7Kb before ZNRF4(+)	Intron of INSR(-):138bp after exon 11	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.2267+139:INSR_chr19:g.5461998inv	IMPPRECISE		MANUAL_OK	5to5	-	1688371	NA	0	18	0	19
P-0048755-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162857451	162864428	Intron of PARK2(-):7Kb after exon 2	Exon 2 of PARK2(-)	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.85_c.171+6891del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6977	NA	0	51	10	56
P-0048756-T01-IM6	SOMATIC	KDM5A	KDM5A	14	12	103256288	461291	5-UTR of TRAF3(+):80Kb before coding start	Intron of KDM5A(-):79bp after exon 9	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(12;14)(p13.33;q32.32)(chr12:g.461291::chr14:g.103256288)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {KDM5A:TRAF3}	0	NA	0	11	0	14
P-0048763-T01-IM6	SOMATIC	VTCN1	VTCN1	1	1	81533670	117695994	IGR: 427Kb before LOC101927412(+)	Intron of VTCN1(-):3bp before exon 4	GRCh37	INVERSION	VTCN1 (NM_024626) rearrangement: c.446-3:VTCN1_chr1:g.81533670inv	PRECISE		MANUAL_OK	3to3	-	36162324	NA	0	103	10	103
P-0048772-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40476872	40636770	Intron of STAT3(-):8bp before exon 17	Intron of ATP6V0A1(+):2Kb after exon 9	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.1465-8:STAT3_chr17:g.40636770dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	159898	NA	0	38	10	38
P-0048772-T01-IM6	SOMATIC	STAT5B	STAT5B	17	6	40364046	159208883	Exon 13 of STAT5B(-)	Intron of EZR(-):648bp before exon 3	GRCh37	TRANSLOCATION	STAT5B (NM_012448) rearrangement: t(6;17)(q25.3;q21.2)(chr6:g.159208883::chr17:g.40364046)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	34	10	40
P-0048773-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3807472	3872301	Intron of CREBBP(-):95bp before exon 19	Intron of CREBBP(-):12Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.799-11521_c.3610-95inv	PRECISE		MANUAL_OK	3to3	-	64829	NA	0	47	10	47
P-0048776-T01-IM6	SOMATIC	TSC1	TSC1	9	9	73622510	135776910	Intron of TRPM3(-):114Kb after exon 1	Intron of TSC1(-):65bp after exon 19	GRCh37	INVERSION	TSC1 (NM_000368) rearrangement: c.2502+66:TSC1_chr9:g.73622510inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	62154400	NA	0	7	8	7
P-0048786-T01-IM6	SOMATIC	HIST1H3E	HIST1H3E	6	6	26032289	26225421	Promoter of HIST1H3B(-):473bp from tx start	Exon 1 of HIST1H3E(+)	GRCh37	INVERSION	HIST1H3E (NM_003532) rearrangement: c.39:HIST1H3E_chr6:g.26032289inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {HIST1H3E:HIST1H3B}	193132	NA	0	6	0	15
P-0048794-T01-IM6	SOMATIC	FGFR2	FGFR2	10	8	123242693	34912856	Intron of FGFR2(-):518bp after exon 17	IGR: 180Kb before UNC5D(+)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(8;10)(p12;q26.13)(chr8:g.34912856::chr10:g.123242693)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	47	10	52
P-0048827-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21555685	42218383	Exon 6 of LATS2(-)	Intron of VWA8(-):27Kb after exon 37	GRCh37	INVERSION	LATS2 (NM_014572) rearrangement: c.2585:LATS2_chr13:g.42218383inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	20662698	NA	0	8	0	8
P-0048827-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71059530	71090557	Intron of FOXP1(-):5Kb after exon 8	Exon 7 of FOXP1(-)	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.791_c.974+5170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31027	NA	0	6	9	6
P-0048828-T01-IM6	SOMATIC	TP53	TP53	17	17	7578616	7581327	Intron of TP53(-):62bp before exon 5	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.376-62:TP53_chr17:g.7581327del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2711	NA	0	57	10	64
P-0048829-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316408	43610616	Intron of KIF5B(-):947bp after exon 15	Intron of RET(+):432bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+948:KIF5B_c.2136+432:RETinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294208	NA	0	41	0	44
P-0048837-T01-IM6	SOMATIC	STAT5B	GSDMA	17	17	38130912	40359518	Intron of GSDMA(+):232bp after exon 9	Intron of STAT5B(-):57bp after exon 16	GRCh37	INVERSION	STAT5B (NM_012448) - GSDMA (NM_178171) rearrangement: c.2077+58:STAT5B_c.906+232:GSDMAinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {STAT5B:GSDMA}	2228606	NA	0	12	0	12
P-0048846-T01-IM6	SOMATIC	NOTCH1	NOTCH1	20	9	42802904	139405807	Intron of JPH2(-):12Kb after exon 1	Intron of NOTCH1(-):84bp before exon 16	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;20)(q34.3;q13.12)(chr9:g.139405807::chr20:g.42802904)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	50	10	50
P-0048848-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30647883	30673143	Intron of PPP1R18(-):717bp before exon 3	Exon 10 of MDC1(-)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.3817:MDC1_chr6:g.30647883dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PPP1R18:MDC1}	25260	NA	0	36	10	42
P-0048671-T02-IM6	SOMATIC	CD74	ROS1	6	5	117647250	149783869	Intron of ROS1(-):136bp after exon 33	Intron of CD74(-):373bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783869::chr6:g.117647250)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	68	10	67
P-0048802-T01-IM6	SOMATIC	TERT	TERT	18	5	71923116	1295313	Intron of CYB5A(-):106bp before exon 3	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;18)(p15.33;q22.3)(chr5:g.1295313::chr18:g.71923116)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	45	10	45
P-0048805-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611225	51584704	Intron of RET(+):806bp before exon 12	Exon 8 of NCOA4(+)	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.851:NCOA4_c.2137-807:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOA4:RET}	7973479	NA	0	34	10	40
P-0048806-T01-IM6	SOMATIC	MDM4	MDM4	1	1	151223675	204511807	Promoter of PIP5K1A(+):53Kb from tx start	Intron of MDM4(+):104bp before exon 8	GRCh37	INVERSION	MDM4 (NM_002393) rearrangement: c.512-105:MDM4_chr1:g.151223675inv	PRECISE		MANUAL_OK	5to5	-	53288132	NA	0	3	6	3
P-0048808-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246363070	246493934	Intron of SMYD3(-):127Kb after exon 5	Intron of SMYD3(-):95bp before exon 4	GRCh37	DUPLICATION	SMYD3 (NM_001167740) rearrangement: c.337-95_c.531+127433dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	130864	NA	0	8	9	8
P-0048815-T01-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2493290	78601774	Intron of TNFRSF14(+):36bp after exon 6	3-UTR of GIPC2(+):90Kb after coding stop	GRCh37	DELETION	TNFRSF14 (NM_003820) rearrangement: c.694+36:TNFRSF14_chr1:g.78601774del	PRECISE		MANUAL_OK	3to5	-	76108484	NA	1	41	10	44
P-0048815-T01-IM6	SOMATIC	ASB17	FUBP1	1	1	76386230	78444589	Intron of ASB17(-):1Kb before exon 3	Exon 1 of FUBP1(-)	GRCh37	DUPLICATION	ASB17 (NM_080868) - FUBP1 (NM_003902) rearrangement: c.682-1387:ASB17_c.100:FUBP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ASB17:FUBP1}	2058359	NA	2	27	10	25
P-0048824-T01-IM6	SOMATIC	TP53	TP53	19	17	57079954	7578459	5-UTR of ZNF470(+):2Kb before coding start	Exon 5 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;19)(p13.1;q13.43)(chr17:g.7578459::chr19:g.57079954)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TP53:ZNF470}	0	NA	0	47	10	56
P-0048887-T01-IM6	SOMATIC	THSD4	VTCN1	15	1	72060483	117695948	Intron of THSD4(+):3Kb before exon 16	Exon 4 of VTCN1(-)	GRCh37	TRANSLOCATION	THSD4 (NM_024817) - VTCN1 (NM_024626) rearrangement: t(1;15)(p13.1;q23)(chr1:g.117695948::chr15:g.72060483)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {THSD4:VTCN1}	0	NA	0	148	10	158
P-0048887-T01-IM6	SOMATIC	TAP2	CYP21A2	6	6	32007914	32805728	Exon 7 of CYP21A2(+)	Exon 2 of TAP2(-)	GRCh37	INVERSION	TAP2 (NM_018833) - CYP21A2 (NM_000500) rearrangement: c.283:TAP2_c.871:CYP21A2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TAP2:CYP21A2}	797814	NA	0	20	10	98
P-0048889-T01-IM6	SOMATIC	NTRK3	NTRK3	15	15	88420297	90427016	Exon 20 of NTRK3(-)	Intron of C15orf38-AP3S2(-):5Kb after exon 7	GRCh37	INVERSION	NTRK3 (NM_001012338) rearrangement: c.2389:NTRK3_chr15:g.90427016inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2006719	NA	0	15	10	18
P-0048892-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156841192	156841976	Intron of NTRK1(+):222bp before exon 7	Intron of NTRK1(+):429bp after exon 7	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.718-223_c.850+429inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	784	NA	0	40	10	39
P-0048892-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37532418	37682432	Intron of FBXL20(-):25Kb after exon 1	Exon 13 of CDK12(+)	GRCh37	INVERSION	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.42+25196:FBXL20_c.3623:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FBXL20:CDK12}	150014	NA	0	16	10	23
P-0048892-T01-IM6	SOMATIC	SEC31A	CDK12	17	4	37682432	83761890	Exon 13 of CDK12(+)	Intron of SEC31A(-):1Kb after exon 20	GRCh37	TRANSLOCATION	SEC31A (NM_014933) - CDK12 (NM_016507) rearrangement: t(4;17)(q21.22;q12)(chr4:g.83761890::chr17:g.37682432)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SEC31A:CDK12}	0	NA	0	17	0	26
P-0048893-T01-IM6	SOMATIC	SPTBN1	ALK	2	2	29448346	54846847	Exon 19 of ALK(-)	Intron of SPTBN1(+):2Kb after exon 7	GRCh37	INVERSION	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.763+1517:SPTBN1_c.3153:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SPTBN1:ALK}	25398501	NA	0	97	10	97
P-0048896-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	154137952	156844909	Intron of TPM3(-):5Kb after exon 6	Intron of NTRK1(+):109bp after exon 11	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1354+109:NTRK1_chr1:g.154137952inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2706957	NA	0	43	10	49
P-0048896-T01-IM6	SOMATIC	NTRK1	SMYD2	1	1	156844382	214498927	Exon 10 of NTRK1(+)	Intron of SMYD2(+):876bp after exon 6	GRCh37	DELETION	NTRK1 (NM_002529) - SMYD2 (NM_020197) rearrangement: c.1215:NTRK1_c.602+876:SMYD2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NTRK1:SMYD2}	57654545	NA	0	47	10	48
P-0048898-T01-IM6	SOMATIC	PAK7	RB1	20	13	9525034	48909327	Exon 8 of PAK7(-)	Intron of RB1(+):7Kb before exon 3	GRCh37	TRANSLOCATION	PAK7 (NM_177990) - RB1 (NM_000321) rearrangement: t(13;20)(q14.2;p12.2)(chr13:g.48909327::chr20:g.9525034)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	100	10	100
P-0039221-T03-IM6	SOMATIC	SRSF2	SRSF2	17	17	74732514	74782264	Exon 2 of SRSF2(-)	IGR: 13Kb before LOC101928514(+)	GRCh37	DELETION	SRSF2 (NM_003016) rearrangement: c.395:SRSF2_chr17:g.74782264del	PRECISE		MANUAL_OK	3to5	-	49750	NA	0	2	10	5
P-0041118-T03-IM6	SOMATIC	CD74	ROS1	6	5	117647424	149782265	Exon 33 of ROS1(-)	Intron of CD74(-):77bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782265::chr6:g.117647424)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	36	10	36
P-0048904-T01-IM6	SOMATIC	ERBB3	ERBB3	18	12	57428632	56493685	IGR: 139Kb before PMAIP1(+)	Exon 25 of ERBB3(+)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(12;18)(q13.2;q21.32)(chr12:g.56493685::chr18:g.57428632)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	27	10	30
P-0048904-T01-IM6	SOMATIC	CCNE1	CCNE1	19	19	30312657	42157013	Exon 8 of CCNE1(+)	IGR: 20Kb before CEACAM7(-)	GRCh37	DELETION	CCNE1 (NM_001238) rearrangement: c.638:CCNE1_chr19:g.42157013del	PRECISE		MANUAL_OK	3to5	-	11844356	NA	0	16	10	17
P-0048904-T01-IM6	SOMATIC	AXL	EPN1	19	19	41737124	56203399	Exon 6 of AXL(+)	Exon 7 of EPN1(+)	GRCh37	DELETION	AXL (NM_021913) - EPN1 (NM_001130071) rearrangement: c.704:AXL_c.1300:EPN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AXL:EPN1}	14466275	NA	0	30	10	32
P-0048904-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	33633229	55139704	IGR: 265Kb before LOC101928622(-)	Exon 10 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1365:PDGFRA_chr4:g.33633229del	PRECISE		MANUAL_OK	3to5	-	21506475	NA	0	3	5	3
P-0048907-T01-IM6	SOMATIC	SUZ12	SHISA6	17	17	11363648	30323950	Intron of SHISA6(+):81Kb after exon 3	Intron of SUZ12(+):54bp after exon 15	GRCh37	DUPLICATION	SUZ12 (NM_015355) - SHISA6 (NM_207386) rearrangement: c.1874+54:SUZ12_c.895+80822:SHISA6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SUZ12:SHISA6}	18960302	NA	0	23	10	26
P-0048907-T01-IM6	SOMATIC	APC	CREB5	7	5	28535020	112174029	Intron of CREB5(+):403bp after exon 3	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) - CREB5 (NM_182898) rearrangement: t(5;7)(q22.2;p15.1)(chr5:g.112174029::chr7:g.28535020)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {APC:CREB5}	0	NA	0	11	10	11
P-0048907-T01-IM6	SOMATIC	VPS41	APC	7	5	38866198	112173605	Intron of VPS41(-):4Kb after exon 5	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	VPS41 (NM_014396) - APC (NM_000038) rearrangement: t(5;7)(q22.2;p14.1)(chr5:g.112173605::chr7:g.38866198)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {VPS41:APC}	0	NA	0	13	10	13
P-0048909-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	5212497	5295751	Exon 31 of PTPRS(-)	5-UTR of PTPRS(-):89Kb before coding start	GRCh37	DELETION	PTPRS (NM_002850) rearrangement: c.4620:PTPRS_chr19:g.5295751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	83254	NA	0	4	10	4
P-0048923-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67593372	83476610	Exon 16 of PIK3R1(+)	Intron of EDIL3(-):271bp before exon 4	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.2118:PIK3R1_chr5:g.83476610del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	15883238	NA	0	25	10	25
P-0048968-T01-IM6	SOMATIC	KIF5B	RET	10	10	32311565	43611809	Intron of KIF5B(-):210bp after exon 16	Intron of RET(+):222bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1914+211:KIF5B_c.2137-223:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11300244	NA	0	46	10	57
P-0048973-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	62249084	72993741	IGR: 563Kb before CDH8(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.304:ZFHX3_chr16:g.62249084del	PRECISE		MANUAL_OK	3to5	-	10744657	NA	0	16	10	18
P-0048973-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37035124	39014756	Exon 1 of MLH1(+)	IGR: 79Kb before WDR48(+)	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.86:MLH1_chr3:g.39014756del	PRECISE		MANUAL_OK	3to5	-	1979632	NA	0	13	10	13
P-0048977-T01-IM6	SOMATIC	TET1	SUPV3L1	10	10	70441397	70960990	Intron of TET1(+):152bp after exon 9	Intron of SUPV3L1(+):735bp after exon 12	GRCh37	DELETION	TET1 (NM_030625) - SUPV3L1 (NM_003171) rearrangement: c.4914+152:TET1_c.1518+735:SUPV3L1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TET1:SUPV3L1}	519593	NA	0	12	7	12
P-0010169-T02-IM6	SOMATIC	ASXL1	ASXL1	20	10	31021229	47067480	Exon 11 of ASXL1(+)	IGR: 16Kb before NPY4R(+)	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) rearrangement: t(10;20)(q11.22;q11.21)(chr10:g.47067480::chr20:g.31021229)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	14
P-0030237-T03-IM6	SOMATIC	AKAP9	BRAF	7	7	91633927	140492357	Intron of AKAP9(+):1Kb after exon 8	Intron of BRAF(-):2Kb after exon 8	GRCh37	INVERSION	AKAP9 (NM_005751) - BRAF (NM_004333) fusion: c.3318+1378:AKAP9_c.1140+1751:BRAFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AKAP9:BRAF}	48858430	NA	0	8	0	15
P-0030266-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68615664	68950361	Intron of CPA6(-):43Kb after exon 1	Intron of PREX2(+):32bp before exon 7	GRCh37	DELETION	PREX2 (NM_024870) rearrangement: c.706-33:PREX2_chr8:g.68615664del	PRECISE		MANUAL_OK	3to5	-	334697	NA	0	32	10	32
P-0033764-T04-IM6	SOMATIC	LRRC16A	BRAF	7	6	140491509	25554753	Intron of BRAF(-):3Kb after exon 8	Intron of LRRC16A(+):429bp after exon 28	GRCh37	TRANSLOCATION	LRRC16A (NM_017640) - BRAF (NM_004333) fusion: t(6;7)(p22.2;q34)(chr6:g.25554753::chr7:g.140491509)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {LRRC16A:BRAF}	0	NA	0	19	0	19
P-0033764-T04-IM6	SOMATIC	BRAF	BRAF	8	7	97550765	140491507	Intron of SDC2(+):44Kb after exon 1	Intron of BRAF(-):3Kb after exon 8	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;8)(q34;q22.1)(chr7:g.140491507::chr8:g.97550765)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	20	0	20
P-0040210-T02-IM6	SOMATIC	PLCG2	PLCG2	16	16	81927130	81999151	Intron of PLCG2(+):183bp before exon 12	Promoter of PLCG2(+):186Kb from tx start	GRCh37	INVERSION	PLCG2 (NM_002661) rearrangement: c.987-184:PLCG2_chr16:g.81999151inv	PRECISE		MANUAL_OK	5to5	-	72021	NA	0	6	7	6
P-0040505-T02-IM6	SOMATIC	NF2	NF2	22	11	30077483	118775307	Exon 15 of NF2(+)	Intron of BCL9L(-):1Kb before exon 4	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(11;22)(q23.3;q12.2)(chr11:g.118775307::chr22:g.30077483)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	19	10	19
P-0046580-T02-IM6	SOMATIC	ATF6	NUF2	1	1	161844547	163325067	Intron of ATF6(+):11Kb after exon 14	Intron of NUF2(+):57bp before exon 14	GRCh37	DELETION	ATF6 (NM_007348) - NUF2 (NM_031423) rearrangement: c.1719+11445:ATF6_c.1261-58:NUF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ATF6:NUF2}	1480520	NA	0	15	10	15
P-0046580-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1741430	1808716	Exon 11 of TACC3(+)	Intron of FGFR3(+):55bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+55:FGFR3_c.1943:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67286	NA	0	20	10	21
P-0048577-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29683727	128669947	Intron of EWSR1(+):604bp after exon 8	Intron of FLI1(+):5Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128669947::chr22:g.29683727)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	70	10	71
P-0048920-T01-IM6	SOMATIC	CUL5	ATM	11	11	107926063	108186695	Intron of CUL5(+):381bp after exon 7	Intron of ATM(+):42bp before exon 42	GRCh37	DELETION	CUL5 (NM_003478) - ATM (NM_000051) rearrangement: c.780+381:CUL5_c.6096-43:ATMdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CUL5:ATM}	260632	NA	0	6	0	10
P-0048922-T01-IM6	SOMATIC	GNA11	LMNB2	19	19	2444494	3115116	Exon 2 of LMNB2(-)	Intron of GNA11(+):46bp after exon 4	GRCh37	INVERSION	GNA11 (NM_002067) - LMNB2 (NM_032737) rearrangement: c.605+46:GNA11_c.309:LMNB2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GNA11:LMNB2}	670622	NA	0	59	10	59
P-0048922-T01-IM6	SOMATIC	DDR2	DDR2	2	1	232508190	162731277	IGR: 51Kb before C2orf57(+)	Intron of DDR2(+):33bp after exon 9	GRCh37	TRANSLOCATION	DDR2 (NM_006182) rearrangement: t(1;2)(q23.3;q37.1)(chr1:g.162731277::chr2:g.232508190)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	8	11
P-0048925-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86547885	86674186	IGR: 16Kb before RASA1(+)	Intron of RASA1(+):26bp before exon 18	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2345-27:RASA1_chr5:g.86547885del	PRECISE		MANUAL_OK	3to5	-	126301	NA	0	4	6	4
P-0048936-T01-IM6	SOMATIC	SMARCD1	SMARCD1	12	6	50484218	106876550	Intron of SMARCD1(+):33bp after exon 8	IGR: 83Kb before AIM1(+)	GRCh37	TRANSLOCATION	SMARCD1 (NM_003076) rearrangement: t(6;12)(q21;q13.12)(chr6:g.106876550::chr12:g.50484218)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	68	10	67
P-0048936-T01-IM6	SOMATIC	ALG14	RB1	13	1	49051408	95496402	Intron of RB1(+):82bp before exon 26	Intron of ALG14(-):4Kb before exon 3	GRCh37	TRANSLOCATION	ALG14 (NM_144988) - RB1 (NM_000321) rearrangement: t(1;13)(p21.3;q14.2)(chr1:g.95496402::chr13:g.49051408)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ALG14:RB1}	0	NA	0	36	10	36
P-0048936-T01-IM6	SOMATIC	ERBB3	KPNA3	13	12	50346188	56489142	Intron of KPNA3(-):20Kb after exon 1	Intron of ERBB3(+):48bp after exon 16	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) - KPNA3 (NM_002267) rearrangement: t(12;13)(q13.2;q14.2)(chr12:g.56489142::chr13:g.50346188)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ERBB3:KPNA3}	0	NA	0	69	10	69
P-0048936-T01-IM6	SOMATIC	ROS1	ROS1	6	1	117646467	93761577	Intron of ROS1(-):889bp before exon 34	IGR: 14Kb before LOC100131564(-)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(1;6)(p22.1;q22.1)(chr1:g.93761577::chr6:g.117646467)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	104	10	106
P-0048936-T01-IM6	SOMATIC	LMOD1	IFNGR1	6	1	137519310	201913481	Exon 7 of IFNGR1(-)	Intron of LMOD1(-):2Kb after exon 1	GRCh37	TRANSLOCATION	LMOD1 (NM_012134) - IFNGR1 (NM_000416) rearrangement: t(1;6)(q32.1;q23.3)(chr1:g.201913481::chr6:g.137519310)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMOD1:IFNGR1}	0	NA	0	44	10	47
P-0048947-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739533	1808898	Intron of TACC3(+):104bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2330:FGFR3_c.1941+104:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69365	NA	0	41	10	45
P-0048948-T01-IM6	SOMATIC	HMGA2	SDHA	12	5	66348951	251388	Intron of HMGA2(+):4Kb after exon 4	Intron of SDHA(+):64bp before exon 13	GRCh37	TRANSLOCATION	HMGA2 (NM_003483) - SDHA (NM_004168) rearrangement: t(5;12)(p15.33;q14.3)(chr5:g.251388::chr12:g.66348951)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {HMGA2:SDHA}	0	NA	0	44	10	51
P-0048950-T01-IM6	SOMATIC	SND1	BRAF	7	7	127391491	140492033	Intron of SND1(+):30Kb after exon 10	Intron of BRAF(-):2Kb after exon 8	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1152+30037:SND1_c.1140+2075:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13100542	NA	0	99	10	97
P-0048954-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39706433	39749168	Intron of TOP1(+):156bp after exon 5	Intron of TOP1(+):1Kb before exon 19	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.335+156_c.1951-1168del	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	42735	NA	0	3	7	3
P-0048955-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39800474	42868979	Intron of ERG(-):5Kb before exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1067:TMPRSS2_c.237-4991:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3068505	NA	0	34	10	35
P-0048958-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162659352	162683813	Intron of PARK2(-):24Kb after exon 3	Intron of PARK2(-):16bp before exon 3	GRCh37	DUPLICATION	PARK2 (NM_004562) rearrangement: c.172-16_c.412+24205dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	24461	NA	0	8	0	9
P-0048980-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42868674	41631175	Intron of TMPRSS2(-):1Kb after exon 2	IGR: 26Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41631175::chr21:g.42868674)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	89	10	94
P-0048985-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739007	1808827	Exon 9 of TACC3(+)	Intron of FGFR3(+):15bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-16:FGFR3_c.1788:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69820	NA	0	204	10	238
P-0048992-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36175602	36206904	Intron of RUNX1(-):4Kb before exon 8	Intron of RUNX1(-):6bp before exon 7	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.614-6_c.806-3843dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	31302	NA	0	18	10	57
P-0048992-T01-IM6	SOMATIC	ARHGEF38	TET2	4	4	106197244	106529897	Exon 11 of TET2(+)	Intron of ARHGEF38(+):5Kb before exon 3	GRCh37	DUPLICATION	ARHGEF38 (NM_001242729) - TET2 (NM_001127208) rearrangement: c.385-4644:ARHGEF38_c.5577:TET2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ARHGEF38:TET2}	332653	NA	0	13	10	13
P-0048996-T01-IM6	SOMATIC	NF1	NF1	17	17	29555259	29556297	Intron of NF1(+):635bp after exon 20	Exon 21 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.2409+635_c.2664inv	PRECISE		MANUAL_OK	5to5	-	1038	NA	0	2	7	2
P-0048998-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39820671	42872870	Intron of ERG(-):3Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2754:TMPRSS2_c.19-3127:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3052199	NA	0	9	10	9
P-0121453-T01-IM6	SOMATIC	RECQL	RECQL	12	12	21652503	22081306	Exon 3 of RECQL(-)	Intron of ABCC9(-):2Kb before exon 3	GRCh37	INVERSION	RECQL (NM_032941) rearrangement: c.2:RECQL_chr12:g.22081306inv	PRECISE		MANUAL_OK	3to3	-	428803	NA	0	2	10	2
P-0049127-T01-IM6	SOMATIC	EP300	EP300	22	22	41574302	41577834	Exon 31 of EP300(+)	Promoter of EP300(+):89Kb from tx start	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.6587:EP300_chr22:g.41577834dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3532	NA	0	2	10	2
P-0035445-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854421	42874445	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-4329:TMPRSS2_c.18+15866:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3020024	NA	0	125	10	134
P-0048102-T03-IM6	SOMATIC	STRN	ALK	2	2	29447056	37140460	Intron of ALK(-):662bp before exon 20	Intron of STRN(-):3Kb after exon 3	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion: c.412+2761:STRN_c.3173-662:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {STRN:ALK}	7693404	NA	0	27	10	29
P-0049006-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15276865	15289426	Exon 30 of NOTCH3(-)	Intron of NOTCH3(-):207bp after exon 23	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.3837+208_c.5400del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12561	NA	0	15	10	16
P-0049006-T01-IM6	SOMATIC	SOS1	FBXO11	2	2	39262249	48045098	Intron of SOS1(-):103bp after exon 8	Intron of FBXO11(-):819bp after exon 16	GRCh37	DUPLICATION	SOS1 (NM_005633) - FBXO11 (NM_001190274) rearrangement: c.1074+104:SOS1_c.2006+820:FBXO11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SOS1:FBXO11}	8782849	NA	0	4	10	7
P-0049006-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86676253	86686548	Intron of RASA1(+):72bp before exon 20	Intron of RASA1(+):68bp before exon 25	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2604-73_c.3061-69del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	10295	NA	0	15	10	15
P-0020792-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39971635	42871157	3-UTR of ERG(-):62Kb after coding stop	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1041:TMPRSS2_chr21:g.39971635del	PRECISE		MANUAL_OK	3to5	-	2899522	NA	0	50	10	50
P-0012793-T03-IM6	SOMATIC	ATR	ATR	3	3	140796997	142185297	Intron of SPSB4(+):11Kb after exon 2	Exon 40 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.6766:ATR_chr3:g.140796997del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1388300	NA	0	3	8	3
P-0022936-T03-IM6	SOMATIC	MGA	MGA	15	15	41734005	41961851	Intron of RTF1(+):3Kb after exon 2	Exon 2 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.759:MGA_chr15:g.41734005inv	PRECISE		MANUAL_OK	5to5	-	227846	NA	0	28	10	30
P-0022936-T03-IM6	SOMATIC	NTRK1	NTRK1	19	1	1204186	156848955	Promoter of STK11(+):2Kb from tx start	Exon 15 of NTRK1(+)	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) rearrangement: t(1;19)(q23.1;p13.3)(chr1:g.156848955::chr19:g.1204186)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NTRK1:STK11}	0	NA	0	18	0	19
P-0024088-T02-IM6	SOMATIC	TCF3	TCF3	19	19	1615378	1918294	Intron of TCF3(-):306bp after exon 16	Intron of SCAMP4(+):12bp after exon 4	GRCh37	DUPLICATION	TCF3 (NM_001136139) rearrangement: c.1586+307:TCF3_chr19:g.1918294dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	302916	NA	0	37	10	37
P-0024088-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76887092	76891520	Intron of ATRX(-):2Kb after exon 19	Exon 16 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.4585_c.5134+1603inv	PRECISE		MANUAL_OK	3to3	-	4428	NA	0	20	10	20
P-0046175-T02-IM6	SOMATIC	RCN1	TMPRSS2	21	11	42875275	32114150	Intron of TMPRSS2(-):5Kb after exon 1	Intron of RCN1(+):1Kb after exon 1	GRCh37	TRANSLOCATION	RCN1 (NM_002901) - TMPRSS2 (NM_001135099) rearrangement: t(11;21)(p13;q22.3)(chr11:g.32114150::chr21:g.42875275)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RCN1:TMPRSS2}	0	NA	0	19	10	19
P-0046175-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187630870	188179915	Exon 2 of FAT1(-)	IGR: 45Kb before LOC339975(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.112:FAT1_chr4:g.188179915inv	PRECISE		MANUAL_OK	3to3	-	549045	NA	0	7	10	7
P-0046175-T02-IM6	SOMATIC	AR	CAGE1	X	6	66931498	7324070	Exon 4 of AR(+)	Promoter of CAGE1(-):3Kb from tx start	GRCh37	TRANSLOCATION	AR (NM_000044) rearrangement: t(6;X)(p24.3;q12)(chr6:g.7324070::chrX:g.66931498)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {AR:CAGE1}	0	NA	0	19	10	19
P-0047288-T02-IM6	SOMATIC	NTN1	NCOR1	17	17	9042134	15942880	Intron of NTN1(+):24Kb before exon 3	Exon 44 of NCOR1(-)	GRCh37	INVERSION	NTN1 (NM_004822) - NCOR1 (NM_006311) rearrangement: c.1019-23996:NTN1_c.6822:NCOR1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NTN1:NCOR1}	6900746	NA	0	37	10	37
P-0047839-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	78935205	78946838	Exon 31 of RPTOR(+)	IGR: 19Kb before CHMP6(+)	GRCh37	INVERSION	RPTOR (NM_020761) rearrangement: c.3617:RPTOR_chr17:g.78946838inv	PRECISE		MANUAL_OK	5to5	-	11633	NA	0	14	10	16
P-0047840-T02-IM6	SOMATIC	SDC4	ROS1	20	6	43955947	117645871	Exon 5 of SDC4(-)	Intron of ROS1(-):293bp before exon 34	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117645871::chr20:g.43955947)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SDC4:ROS1}	0	NA	0	13	10	13
P-0048734-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29683643	39763676	Intron of EWSR1(+):520bp after exon 8	Intron of ERG(-):39bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39763676::chr22:g.29683643)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	69	10	68
P-0048861-T01-IM6	SOMATIC	EP300	EP300	22	22	41523522	41529818	Exon 4 of EP300(+)	Intron of EP300(+):2Kb before exon 7	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.938_c.1529-1999del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6296	NA	0	12	10	12
P-0049029-T01-IM6	SOMATIC	RELA	RELA	11	7	65429657	79622169	Exon 2 of RELA(-)	IGR: 142Kb before GNAI1(+)	GRCh37	TRANSLOCATION	RELA (NM_021975) rearrangement: t(7;11)(q21.11;q13.1)(chr7:g.79622169::chr11:g.65429657)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0049035-T01-IM6	SOMATIC	BRAF	CLEC2L	7	7	139215088	140485799	Intron of CLEC2L(+):6Kb before exon 2	Intron of BRAF(-):2Kb after exon 9	GRCh37	INVERSION	BRAF (NM_004333) - CLEC2L (NM_001080511) rearrangement: c.1177+1549:BRAF_c.191-5932:CLEC2Linv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:CLEC2L}	1270711	NA	0	89	10	107
P-0049048-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52440877	52443469	Exon 8 of BAP1(-)	Intron of BAP1(-):100bp after exon 3	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.122+101_c.627del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2592	NA	0	138	10	139
P-0049057-T01-IM6	SOMATIC	TBX3	TBX3	12	12	55866104	115110192	Promoter of OR6C70(-):3Kb from tx start	Intron of TBX3(-):85bp before exon 8	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.1771-85:TBX3_chr12:g.55866104inv	PRECISE		MANUAL_OK	3to3	-	59244088	NA	0	29	10	29
P-0049061-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49434782	49468612	Exon 31 of KMT2D(-)	IGR: 10Kb before RHEBL1(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.6771:KMT2D_chr12:g.49468612del	PRECISE		MANUAL_OK	3to5	-	33830	NA	0	4	9	4
P-0049068-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868631	42867241	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):736bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-736:TMPRSS2_c.18+1656:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2998610	NA	0	5	6	4
P-0049068-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874759	151986742	Exon 38 of KMT2C(-)	Intron of KMT2C(-):16Kb before exon 7	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.850-15790_c.7779dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	111983	NA	0	9	10	11
P-0049087-T01-IM6	SOMATIC	SPOP	SPOP	17	17	47684560	49150995	Intron of SPOP(-):51bp after exon 8	Intron of SPAG9(-):6Kb after exon 2	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: c.837+52:SPOP_chr17:g.49150995inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1466435	NA	0	15	10	15
P-0049091-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968241	21970901	Exon 3 of CDKN2A(-)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.457_c.458del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2660	NA	0	3	8	3
P-0049092-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56437332	56451018	Intron of RNF43(-):177bp after exon 8	Intron of RNF43(-):3Kb before exon 3	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.253-2624_c.952+178dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	13686	NA	0	4	10	4
P-0049098-T01-IM6	SOMATIC	YES1	YES1	19	18	27888475	739716	IGR: 393Kb before LINC00662(-)	Intron of YES1(-):18bp after exon 9	GRCh37	TRANSLOCATION	YES1 (NM_005433) rearrangement: t(18;19)(p11.32;q11)(chr18:g.739716::chr19:g.27888475)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	9
P-0049114-T02-IM6	SOMATIC	MET	MET	7	7	116403326	116411634	Intron of MET(+):4bp after exon 11	Exon 13 of MET(+)	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2583+4_c.2813del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8308	NA	0	50	10	53
P-0049183-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115114531	115115604	Intron of TBX3(-):256bp before exon 6	Intron of TBX3(-):143bp before exon 5	GRCh37	DUPLICATION	TBX3 (NM_016569) rearrangement: c.865-143_c.942-256dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1073	NA	0	8	10	9
P-0049200-T01-IM6	SOMATIC	PTP4A1	PTP4A1	6	1	64286894	176585817	Intron of PTP4A1(+):4bp after exon 2	Intron of PAPPA2(+):21Kb after exon 3	GRCh37	TRANSLOCATION	PTP4A1 (NM_003463) rearrangement: t(1;6)(q25.2;q12)(chr1:g.176585817::chr6:g.64286894)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	7	10	13
P-0049247-T01-IM6	SOMATIC	PLCG2	AP1G1	16	16	71809789	81934280	Intron of AP1G1(-):1Kb before exon 3	Exon 14 of PLCG2(+)	GRCh37	INVERSION	PLCG2 (NM_002661) - AP1G1 (NM_001128) rearrangement: c.1257:PLCG2_c.202-1294:AP1G1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PLCG2:AP1G1}	10124491	NA	0	9	10	9
P-0049247-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37038199	37042445	Exon 2 of MLH1(+)	Exon 3 of MLH1(+)	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.206_c.208-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4246	NA	0	4	10	4
P-0049247-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37042542	37045890	Exon 3 of MLH1(+)	Intron of MLH1(+):1bp before exon 4	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.304_c.307-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3348	NA	0	2	10	2
P-0049247-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37045963	37048480	Exon 4 of MLH1(+)	Intron of MLH1(+):1bp before exon 5	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.378_c.381-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2517	NA	0	2	10	3
P-0049247-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37048553	37050304	Exon 5 of MLH1(+)	Exon 6 of MLH1(+)	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.452_c.454-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1751	NA	0	3	10	4
P-0049248-T01-IM6	SOMATIC	ZCCHC14	FANCA	16	16	87457371	89806059	Intron of ZCCHC14(-):44bp after exon 4	Intron of FANCA(-):98bp before exon 40	GRCh37	DUPLICATION	ZCCHC14 (NM_015144) - FANCA (NM_000135) rearrangement: c.429+45:ZCCHC14_c.3935-98:FANCAdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ZCCHC14:FANCA}	2348688	NA	0	14	0	14
P-0049248-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52436318	52719537	Exon 17 of BAP1(-)	5-UTR of PBRM1(-):137Kb before coding start	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.2176:BAP1_chr3:g.52719537dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BAP1:PBRM1}	283219	NA	0	89	10	90
P-0049262-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46281756	46285828	Exon 22 of NCOA3(+)	Promoter of NCOA3(+):155Kb from tx start	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.4203:NCOA3_chr20:g.46285828del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4072	NA	0	7	10	8
P-0049263-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46285977	64444814	Intron of ARID2(+):98bp after exon 18	Intron of SRGAP1(+):7Kb after exon 6	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.5147+98:ARID2_chr12:g.64444814inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	18158837	NA	0	7	9	10
P-0049269-T01-IM6	SOMATIC	TAF4	RTEL1	20	20	60623654	62320884	Intron of TAF4(-):16Kb after exon 1	Exon 23 of RTEL1(+)	GRCh37	INVERSION	TAF4 (NM_003185) - RTEL1 (NM_032957) rearrangement: c.1360+15853:TAF4_c.1980:RTEL1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TAF4:RTEL1}	1697230	NA	0	13	10	17
P-0049270-T01-IM6	SOMATIC	IRF4	IFNGR1	6	6	393296	137520806	Exon 2 of IRF4(+)	Intron of IFNGR1(-):1Kb before exon 7	GRCh37	DELETION	IRF4 (NM_002460) - IFNGR1 (NM_000416) rearrangement: c.144:IRF4_c.862-1030:IFNGR1del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	137127510	NA	0	33	10	33
P-0049330-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193104124	193104698	Intron of CDC73(+):396bp before exon 4	Exon 5 of CDC73(+)	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.308-397_c.402inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	574	NA	0	15	0	15
P-0049337-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56481572	69067301	Intron of ERBB3(+):6bp before exon 6	Promoter of LOC100507250(-):849bp from tx start	GRCh37	DELETION	ERBB3 (NM_001982) rearrangement: c.614-7:ERBB3_chr12:g.69067301del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	12585729	NA	0	4	8	4
P-0049343-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38280792	38282228	Intron of FGFR1(-):1Kb after exon 8	Intron of FGFR1(-):11bp before exon 8	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.839-11_c.1029+1235dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1436	NA	0	5	5	5
P-0049346-T01-IM6	SOMATIC	PIP5K1A	PIK3CD	1	1	9784798	151199726	Intron of PIK3CD(+):63bp before exon 23	Intron of PIP5K1A(+):69bp before exon 3	GRCh37	DUPLICATION	PIP5K1A (NM_001135638) - PIK3CD (NM_005026) rearrangement: c.157-70:PIP5K1A_c.2865-64:PIK3CDdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PIP5K1A:PIK3CD}	141414928	NA	0	16	0	17
P-0049346-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	14	31384948	23983015	Intron of DNMT3B(+):44bp before exon 14	5-UTR of THTPA(+):46Kb before coding start	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(14;20)(q11.2;q11.21)(chr14:g.23983015::chr20:g.31384948)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	10	0	10
P-0049346-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31004859	31018864	Intron of ASXL1(+):11Kb before exon 4	Intron of ASXL1(+):259bp before exon 8	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.253-11072_c.719-260del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	14005	NA	0	16	10	16
P-0049348-T01-IM6	SOMATIC	ATR	ATR	3	3	71998222	142261522	IGR: 86Kb before LINC00877(-)	Exon 17 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.3435:ATR_chr3:g.71998222del	PRECISE		MANUAL_OK	3to5	-	70263300	NA	0	28	10	30
P-0049436-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30661093	30729995	Intron of TGFBR2(+):4Kb before exon 2	Exon 7 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.95-3598_c.1591del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	68902	NA	0	5	0	5
P-0049439-T01-IM6	SOMATIC	KLK3	TMPRSS2	21	19	42843855	51359165	Exon 10 of TMPRSS2(-)	Intron of KLK3(+):330bp before exon 2	GRCh37	TRANSLOCATION	KLK3 (NM_001648) - TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.33;q22.3)(chr19:g.51359165::chr21:g.42843855)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KLK3:TMPRSS2}	0	NA	1	63	10	60
P-0049442-T01-IM6	SOMATIC	ERG	ERG	21	21	30924034	39755685	Intron of GRIK1(-):3Kb after exon 15	Exon 10 of ERG(-)	GRCh37	DUPLICATION	ERG (NM_182918) rearrangement: c.1080:ERG_chr21:g.30924034dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GRIK1:ERG}	8831651	NA	0	22	10	25
P-0049445-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52625795	52651263	Intron of PBRM1(-):3Kb before exon 19	Intron of PBRM1(-):14bp after exon 15	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1818+15_c.2780-2524del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	25468	NA	0	53	10	53
P-0049452-T01-IM6	SOMATIC	ATR	ATR	3	3	142278175	193309563	Exon 7 of ATR(-)	Promoter of OPA1(+):1Kb from tx start	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.1650:ATR_chr3:g.193309563inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {OPA1:ATR}	51031388	NA	0	41	10	39
P-0049457-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68352630	68358767	Exon 6 of RAD51B(+)	Intron of RAD51B(+):5Kb after exon 7	GRCh37	DELETION	RAD51B (NM_133509) rearrangement: c.497_c.756+4846del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6137	NA	0	6	0	6
P-0049457-T01-IM6	SOMATIC	TP53	TP53	17	17	7549007	7579737	IGR: 5Kb before ATP1B2(+)	Intron of TP53(-):16bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-16:TP53_chr17:g.7549007del	PRECISE		MANUAL_OK	3to5	-	30730	NA	0	87	10	90
P-0022143-T05-IM6	SOMATIC	ERCC2	ERCC2	19	19	45864954	45867309	Intron of ERCC2(-):54bp before exon 12	Exon 10 of ERCC2(-)	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.884_c.1119-54inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2355	NA	0	64	10	83
P-0024797-T04-IM6	SOMATIC	SPEN	SPEN	12	1	64915315	16261055	IGR: 69Kb before TBK1(+)	Exon 11 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;12)(p36.13;q14.2)(chr1:g.16261055::chr12:g.64915315)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0047538-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72970407	72991580	Intron of ZFHX3(-):14Kb after exon 3	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2465_c.3216+13961del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21173	NA	0	15	10	15
P-0047989-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1739176	1809087	Intron of TACC3(+):121bp after exon 9	3-UTR of FGFR3(+):13Kb after coding stop	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) rearrangement: c.*98:FGFR3_c.1836+121:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	-	69911	NA	0	10	0	12
P-0048422-T02-IM6	SOMATIC	GLI1	DDIT3	12	12	57859319	57913396	Intron of GLI1(+):70bp before exon 6	5-UTR of DDIT3(-):3Kb before coding start	GRCh37	INVERSION	GLI1 (NM_005269) - DDIT3 (NM_001195054) rearrangement: c.535-71:GLI1_c.-116+805:DDIT3inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {DDIT3:GLI1}	54077	NA	0	89	10	95
P-0049292-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	122834769	123325354	IGR: 224Kb before WDR11(+)	Intron of FGFR2(-):136bp before exon 3	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.110-136:FGFR2_chr10:g.122834769inv	PRECISE		MANUAL_OK	3to3	-	490585	NA	0	26	10	26
P-0049292-T01-IM6	SOMATIC	CARM1	SMARCA4	19	19	11017028	11149968	Intron of CARM1(+):1Kb after exon 2	Intron of SMARCA4(+):2Kb before exon 30	GRCh37	INVERSION	CARM1 (NM_199141) - SMARCA4 (NM_003072) rearrangement: c.346+1276:CARM1_c.4171-2015:SMARCA4inv	PRECISE		MANUAL_OK	5to5	-	132940	NA	0	5	10	5
P-0049318-T01-IM6	SOMATIC	EML4	ALK	2	2	29446359	42546999	Exon 20 of ALK(-)	Intron of EML4(+):2Kb after exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2154+2335:EML4_c.3208:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13100640	NA	0	35	10	35
P-0049363-T01-IM6	SOMATIC	TERT	TERT	8	5	52991942	1279525	IGR: 31Kb before ST18(-)	Exon 5 of TERT(-)	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;8)(p15.33;q11.23)(chr5:g.1279525::chr8:g.52991942)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	21	10	21
P-0049438-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71948973	71956569	Intron of INPPL1(+):112bp before exon 27	Promoter of PHOX2A(-):6Kb from tx start	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.3553-113:INPPL1_chr11:g.71956569del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	7596	NA	0	4	8	4
P-0049438-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	3	42861570	185825058	Intron of TMPRSS2(-):50bp before exon 4	5-UTR of ETV5(-):59Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(3;21)(q27.2;q22.3)(chr3:g.185825058::chr21:g.42861570)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ETV5:TMPRSS2}	0	NA	0	11	10	11
P-0049455-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	48838338	49438218	IGR: 28Kb before ANP32D(+)	Exon 20 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.5051:KMT2D_chr12:g.48838338del	PRECISE		MANUAL_OK	3to5	-	599880	NA	0	12	10	13
P-0049355-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120510014	144545453	Intron of NOTCH2(-):41bp after exon 8	Intron of NBPF20(+):279Kb before exon 53	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.1453+42:NOTCH2_chr1:g.144545453inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {NOTCH2:NBPF20}	24035439	NA	0	7	10	11
P-0049355-T01-IM6	SOMATIC	H3F3B	UNK	17	17	73774761	73797185	Exon 4 of H3F3B(-)	Intron of UNK(+):9Kb before exon 2	GRCh37	INVERSION	H3F3B (NM_005324) - UNK (NM_001080419) rearrangement: c.326:H3F3B_c.105-8656:UNKinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {H3F3B:UNK}	22424	NA	0	24	10	29
P-0049366-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	23089705	32168992	IGR: 520Kb before HDGFL1(+)	Exon 22 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.4041:NOTCH4_chr6:g.23089705inv	PRECISE		MANUAL_OK	5to5	-	9079287	NA	0	87	10	105
P-0049375-T01-IM6	SOMATIC	EML4	ALK	2	2	29446732	42493037	Intron of ALK(-):338bp before exon 20	Intron of EML4(+):1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1166:EML4_c.3173-338:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046305	NA	0	118	10	116
P-0049381-T01-IM6	SOMATIC	KDM6A	KDM6A	X	2	44918272	163611887	Exon 11 of KDM6A(+)	Intron of KCNH7(-):81Kb after exon 2	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(2;X)(q24.2;p11.3)(chr2:g.163611887::chrX:g.44918272)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	58	10	83
P-0049383-T01-IM6	SOMATIC	RB1	DIAPH3	13	13	49039511	60441503	Intron of RB1(+):7bp after exon 23	Intron of DIAPH3(-):6Kb before exon 21	GRCh37	INVERSION	RB1 (NM_000321) - DIAPH3 (NM_001042517) rearrangement: c.2489+7:RB1_c.2608-5833:DIAPH3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RB1:DIAPH3}	11401992	NA	0	79	10	79
P-0049385-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89805136	89805945	Intron of FANCA(-):20bp before exon 43	Exon 40 of FANCA(-)	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.3951_c.4261-20del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	809	NA	0	12	0	12
P-0049385-T01-IM6	SOMATIC	RAD50	RAD50	5	5	131973775	131978041	Exon 23 of RAD50(+)	Exon 25 of RAD50(+)	GRCh37	INVERSION	RAD50 (NM_005732) rearrangement: c.3478_c.3924inv	IMPPRECISE		MANUAL_OK	5to5	-	4266	NA	0	5	0	6
P-0049407-T01-IM6	SOMATIC	PTEN	PTEN	17	10	49865374	89711879	Intron of CA10(-):40Kb before exon 4	Exon 6 of PTEN(+)	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;17)(q23.31;q21.33)(chr10:g.89711879::chr17:g.49865374)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	38	10	44
P-0049411-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39859042	42871333	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1217:TMPRSS2_c.18+11245:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3012291	NA	0	21	10	21
P-0012098-T06-IM6	SOMATIC	WNT2	CARD11	7	7	2957043	116961749	Intron of CARD11(-):24bp before exon 20	Intron of WNT2(-):902bp before exon 2	GRCh37	DELETION	WNT2 (NM_003391) - CARD11 (NM_032415) rearrangement: c.84-902:WNT2_c.2608-24:CARD11del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {WNT2:CARD11}	114004706	NA	0	35	0	35
P-0037105-T04-IM6	SOMATIC	ARID1A	ZDHHC18	1	1	27101056	27157879	Exon 18 of ARID1A(+)	Intron of ZDHHC18(+):1Kb before exon 2	GRCh37	DELETION	ARID1A (NM_006015) - ZDHHC18 (NM_032283) rearrangement: c.4338:ARID1A_c.336-1059:ZDHHC18del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:ZDHHC18}	56823	NA	0	53	10	54
P-0041583-T02-IM6	SOMATIC	ERCC5	USH2A	13	1	103514908	215859641	Exon 8 of ERCC5(+)	Intron of USH2A(-):6Kb before exon 62	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) - USH2A (NM_206933) rearrangement: t(1;13)(q41;q33.1)(chr1:g.215859641::chr13:g.103514908)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERCC5:USH2A}	0	NA	0	5	5	4
P-0041583-T02-IM6	SOMATIC	PTPRT	PIGU	20	20	33211961	40911102	Intron of PIGU(-):8Kb before exon 7	Intron of PTPRT(-):26bp after exon 13	GRCh37	DELETION	PTPRT (NM_133170) - PIGU (NM_080476) rearrangement: c.2176+27:PTPRT_c.530-8018:PIGUdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PTPRT:PIGU}	7699141	NA	0	12	10	12
P-0049417-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78424811	78432392	Intron of FUBP1(-):1Kb after exon 16	Exon 7 of FUBP1(-)	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.459_c.1576+1058del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7581	NA	0	5	0	8
P-0049420-T01-IM6	SOMATIC	BABAM1	UHRF1	19	19	4951357	17389722	Intron of UHRF1(+):349bp after exon 12	Exon 9 of BABAM1(+)	GRCh37	DUPLICATION	BABAM1 (NM_001033549) - UHRF1 (NM_001048201) rearrangement: c.855:BABAM1_c.1818+349:UHRF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BABAM1:UHRF1}	12438365	NA	0	44	10	46
P-0049421-T01-IM6	SOMATIC	YES1	ADRBK2	22	18	26043444	756563	Intron of ADRBK2(+):3Kb after exon 3	Exon 2 of YES1(-)	GRCh37	TRANSLOCATION	YES1 (NM_005433) - ADRBK2 (NM_005160) rearrangement: t(18;22)(p11.32;q12.1)(chr18:g.756563::chr22:g.26043444)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {YES1:ADRBK2}	0	NA	0	6	0	9
P-0049427-T01-IM6	SOMATIC	ALS2CR12	CASP8	2	2	202137282	202179429	Intron of CASP8(+):78bp before exon 4	Intron of ALS2CR12(-):5Kb before exon 10	GRCh37	INVERSION	ALS2CR12 (NM_001127391) - CASP8 (NM_001080125) rearrangement: c.676-5456:ALS2CR12_c.589-79:CASP8inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ALS2CR12:CASP8}	42147	NA	0	45	10	88
P-0049427-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882929	42873689	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3573:TMPRSS2_c.39+64657:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2990760	NA	0	100	10	105
P-0049428-T01-IM6	SOMATIC	ZNF737	NOTCH3	19	19	15292578	20738874	Exon 17 of NOTCH3(-)	Intron of ZNF737(-):2Kb before exon 2	GRCh37	DELETION	ZNF737 (NM_001159293) - NOTCH3 (NM_000435) rearrangement: c.4-2233:ZNF737_c.2601:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZNF737:NOTCH3}	5446296	NA	0	16	10	17
P-0049502-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739967	1808726	Intron of TACC3(+):538bp after exon 10	Intron of FGFR3(+):65bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+65:FGFR3_c.1941+538:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68759	NA	0	238	10	267
P-0049505-T01-IM6	SOMATIC	JAK3	JAK3	19	19	17943764	17946712	Intron of JAK3(-):26bp before exon 18	Intron of JAK3(-):20bp after exon 14	GRCh37	DELETION	JAK3 (NM_000215) rearrangement: c.1914+21_c.2351-26del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2948	NA	0	53	10	57
P-0049542-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36257063	36259323	Intron of RUNX1(-):2Kb after exon 4	Exon 4 of RUNX1(-)	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.168_c.351+2077del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2260	NA	0	2	10	2
P-0049542-T01-IM6	SOMATIC	ATRX	ATRX	X	X	74625189	76939015	Intron of ZDHHC15(-):12Kb after exon 9	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.1733:ATRX_chrX:g.74625189inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2313826	NA	0	8	8	8
P-0049543-T01-IM6	SOMATIC	RTEL1	RTEL1	20	14	62305625	51787212	Intron of RTEL1(+):179bp after exon 10	IGR: 13Kb before LINC00640(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(14;20)(q22.1;q13.33)(chr14:g.51787212::chr20:g.62305625)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	12
P-0049543-T01-IM6	SOMATIC	EPHA5	EPHA5	7	4	140209842	66217161	IGR: 8Kb before DENND2A(-)	Exon 14 of EPHA5(-)	GRCh37	TRANSLOCATION	EPHA5 (NM_004439) rearrangement: t(4;7)(q13.1;q34)(chr4:g.66217161::chr7:g.140209842)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	10	32
P-0048875-T03-IM6	SOMATIC	RET	RET	10	10	43610184	56155858	Exon 11 of RET(+)	Intron of PCDH15(-):17Kb before exon 5	GRCh37	DELETION	RET (NM_020975) rearrangement: c.2136:RET_chr10:g.56155858del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	12545674	NA	0	79	10	206
P-0048875-T03-IM6	SOMATIC	RICTOR	FYB	5	5	39074209	39174771	Intron of RICTOR(-):3bp after exon 2	Intron of FYB(-):21Kb before exon 3	GRCh37	DUPLICATION	RICTOR (NM_152756) - FYB (NM_001243093) rearrangement: c.97+4:RICTOR_c.1166-21065:FYBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RICTOR:FYB}	100562	NA	0	56	10	57
P-0049475-T01-IM6	SOMATIC	ARID1A	RPS6KA1	1	1	26889411	27100047	Intron of RPS6KA1(+):1Kb after exon 17	Intron of ARID1A(+):23bp before exon 16	GRCh37	DUPLICATION	ARID1A (NM_006015) - RPS6KA1 (NM_001006665) rearrangement: c.3867-24:ARID1A_c.1617+1257:RPS6KA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARID1A:RPS6KA1}	210636	NA	0	8	10	8
P-0049483-T01-IM6	SOMATIC	YAP1	YAP1	13	11	72715658	102098052	IGR: 567Kb before MZT1(-)	Intron of YAP1(+):147bp before exon 8	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(11;13)(q22.1;q21.33)(chr11:g.102098052::chr13:g.72715658)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0049483-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15246720	15376374	IGR: 21Kb before ILVBL(-)	Exon 5 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.640:BRD4_chr19:g.15246720del	PRECISE		MANUAL_OK	3to5	-	129654	NA	0	7	10	8
P-0049516-T01-IM6	SOMATIC	TMPRSS9	DOT1L	19	19	2228323	2400015	Intron of DOT1L(+):1Kb after exon 27	Intron of TMPRSS9(+):824bp after exon 3	GRCh37	DUPLICATION	TMPRSS9 (NM_182973) - DOT1L (NM_032482) rearrangement: c.412+824:TMPRSS9_c.4606+1197:DOT1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS9:DOT1L}	171692	NA	0	18	10	20
P-0049516-T01-IM6	SOMATIC	ATRX	ATRX	X	18	76876077	5234240	Intron of ATRX(-):77bp before exon 20	Promoter of LINC00526(-):2Kb from tx start	GRCh37	TRANSLOCATION	ATRX (NM_000489) rearrangement: t(18;X)(p11.31;q21.1)(chr18:g.5234240::chrX:g.76876077)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	50	10	50
P-0049516-T01-IM6	SOMATIC	ATRX	ATRX	X	X	56493169	76872009	IGR: 97Kb before UBQLN2(+)	Intron of ATRX(-):71bp after exon 22	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.5566+72:ATRX_chrX:g.56493169inv	PRECISE		MANUAL_OK	5to5	-	20378840	NA	0	56	10	59
P-0049519-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	8	52714414	110514912	Intron of PPP2R1A(+):98bp before exon 4	Intron of PKHD1L1(+):2Kb before exon 68	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) rearrangement: t(8;19)(q23.2;q13.41)(chr8:g.110514912::chr19:g.52714414)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	10	10
P-0049520-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40822873	42874915	5-UTR of SH3BGR(+):12Kb before coding start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-4799:TMPRSS2_chr21:g.40822873inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {SH3BGR:TMPRSS2}	2052042	NA	0	11	9	11
P-0049520-T01-IM6	SOMATIC	TP63	TP63	3	3	189455554	190865940	Exon 2 of TP63(+)	IGR: 64Kb before OSTN(+)	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.88:TP63_chr3:g.190865940del	PRECISE		MANUAL_OK	3to5	-	1410386	NA	0	7	7	7
P-0049560-T01-IM6	SOMATIC	DNMT3A	DTNB	2	2	25466823	25646846	Exon 16 of DNMT3A(-)	Intron of DTNB(-):4Kb after exon 14	GRCh37	DUPLICATION	DNMT3A (NM_022552) - DTNB (NM_021907) rearrangement: c.1880:DNMT3A_c.1554+3558:DTNBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3A:DTNB}	180023	NA	0	44	10	45
P-0049560-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8340909	8520917	Intron of PTPRD(-):180bp after exon 41	Intron of PTPRD(-):359bp after exon 20	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.961+360_c.5126+181dup	PRECISE		MANUAL_OK	5to3	Duplication of 21 exons : out of frame	180008	NA	0	6	10	6
P-0049591-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55209477	55223235	Intron of EGFR(+):501bp before exon 2	Intron of EGFR(+):287bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-502_c.890-288del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	13758	NA	0	25	10	25
P-0049591-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268849	55270268	Intron of EGFR(+):31bp before exon 25	Exon 27 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-32_c.3221del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1419	NA	0	103	10	114
P-0018669-T02-IM6	SOMATIC	ARHGAP40	TOP1	20	20	37253954	39709668	Intron of ARHGAP40(+):2Kb before exon 3	Intron of TOP1(+):136bp before exon 7	GRCh37	DELETION	ARHGAP40 (NM_001164431) - TOP1 (NM_003286) rearrangement: c.338-1687:ARHGAP40_c.432-137:TOP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ARHGAP40:TOP1}	2455714	NA	0	17	10	17
P-0022482-T03-IM6	SOMATIC	CARD11	CARD11	7	7	2978422	3588919	Exon 7 of CARD11(-)	Intron of SDK1(+):70Kb before exon 2	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.908:CARD11_chr7:g.3588919del	PRECISE		MANUAL_OK	3to5	-	610497	NA	0	33	10	33
P-0044017-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21958116	21974366	IGR: 9Kb before CDKN2A-AS1(+)	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3159:CDKN2A_chr9:g.21958116del	PRECISE		MANUAL_OK	3to5	-	16250	NA	0	131	10	159
P-0046398-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57487473	57493589	Intron of NAB2(+):92bp after exon 6	Exon 15 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+92:NAB2_c.1705:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	6116	NA	0	54	10	53
P-0048102-T02-IM6	SOMATIC	STRN	ALK	2	2	29447056	37140460	Intron of ALK(-):662bp before exon 20	Intron of STRN(-):3Kb after exon 3	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion: c.412+2761:STRN_c.3173-662:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {STRN:ALK}	7693404	NA	0	39	10	40
P-0048165-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55177556	55222835	Intron of EGFR(+):32Kb before exon 2	Intron of EGFR(+):687bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-32423_c.890-688del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	45279	NA	0	3	0	3
P-0048165-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268262	55271538	Intron of EGFR(+):156bp after exon 24	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+156_c.3271+1220del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3276	NA	0	172	0	1656
P-0049305-T02-IM6	SOMATIC	ROS1	ROS1	6	6	117715402	134256989	Exon 10 of ROS1(-)	IGR: 16Kb before TBPL1(+)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.1087:ROS1_chr6:g.134256989del	PRECISE		MANUAL_OK	3to5	-	16541587	NA	0	12	10	14
P-0049522-T01-IM6	SOMATIC	SESN2	SESN2	1	1	28587563	28600759	Intron of SESN2(+):1Kb after exon 1	Intron of SESN2(+):90bp after exon 7	GRCh37	INVERSION	SESN2 (NM_031459) rearrangement: c.90+1115_c.1020+90inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	13196	NA	0	4	8	4
P-0049522-T01-IM6	SOMATIC	SESN2	SESN2	1	1	28601535	30977575	Intron of SESN2(+):9bp after exon 8	IGR: 207Kb before MATN1(-)	GRCh37	INVERSION	SESN2 (NM_031459) rearrangement: c.1211+9:SESN2_chr1:g.30977575inv	PRECISE		MANUAL_OK	5to5	-	2376040	NA	0	2	10	3
P-0049522-T01-IM6	SOMATIC	WHSC1	KALRN	4	3	1954066	124313742	Intron of WHSC1(+):108bp after exon 11	Intron of KALRN(+):10Kb after exon 1	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) - KALRN (NM_001024660) rearrangement: t(3;4)(q21.2;p16.3)(chr3:g.124313742::chr4:g.1954066)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {WHSC1:KALRN}	0	NA	0	6	8	6
P-0049524-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49437289	49446994	Intron of KMT2D(-):78bp before exon 24	Exon 7 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.950_c.5468-78del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9705	NA	0	50	10	54
P-0049524-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70118988	70120367	Exon 2 of SOX9(+)	Exon 3 of SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: c.560_c.1369del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1379	NA	0	49	10	51
P-0049524-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10599985	10612345	Exon 5 of KEAP1(-)	5-UTR of KEAP1(-):15Kb before coding start	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1591:KEAP1_chr19:g.10612345del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12360	NA	0	35	10	38
P-0049524-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25976876	25978948	Intron of ASXL2(-):368bp before exon 10	Exon 9 of ASXL2(-)	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.975_c.1037-368del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2072	NA	0	29	10	31
P-0049532-T01-IM6	SOMATIC	MED12	MED12	X	X	64807314	70342516	IGR: 37Kb before FRMD8P1(-)	Intron of MED12(+):59bp after exon 9	GRCh37	DELETION	MED12 (NM_005120) rearrangement: c.1348+59:MED12_chrX:g.64807314del	PRECISE		MANUAL_OK	3to5	-	5535202	NA	0	3	9	3
P-0049541-T01-IM6	SOMATIC	KEAP1	KEAP1	19	16	10597674	33840009	Intron of KEAP1(-):180bp before exon 6	IGR: 121Kb before LINC00273(-)	GRCh37	TRANSLOCATION	KEAP1 (NM_203500) rearrangement: t(16;19)(p11.2;p13.2)(chr16:g.33840009::chr19:g.10597674)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	11
P-0049590-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42433155	42879866	IGR: 80Kb before LINC00323(-)	Intron of TMPRSS2(-):10bp after exon 1	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement: c.55+11:TMPRSS2_chr21:g.42433155dup	PRECISE		MANUAL_OK	5to3	-	446711	NA	0	73	10	81
P-0049596-T01-IM6	SOMATIC	ROS1	ROS1	6	1	117663729	10655707	Intron of ROS1(-):22bp before exon 28	Intron of PEX14(+):4Kb before exon 4	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(1;6)(p36.22;q22.1)(chr1:g.10655707::chr6:g.117663729)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	10	0	10
P-0049596-T01-IM6	SOMATIC	TRAF2	TRAF2	9	9	139815624	139938255	Exon 9 of TRAF2(+)	Intron of NPDC1(-):730bp before exon 2	GRCh37	DELETION	TRAF2 (NM_021138) rearrangement: c.1095:TRAF2_chr9:g.139938255del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	122631	NA	2	128	10	301
P-0049597-T01-IM6	SOMATIC	BRD4	BRD4	X	19	137085626	15350005	IGR: 437Kb before ZIC3(+)	Exon 18 of BRD4(-)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(19;X)(p13.12;q26.3)(chr19:g.15350005::chrX:g.137085626)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	7
P-0049598-T01-IM6	SOMATIC	NF1	NF1	17	4	29422420	185552772	Intron of NF1(+):33bp after exon 1	Intron of CASP3(-):146bp after exon 6	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(4;17)(q35.1;q11.2)(chr4:g.185552772::chr17:g.29422420)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	23	10	25
P-0049598-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36221553	36223709	Intron of KMT2B(+):36bp after exon 25	Exon 28 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5276+36_c.6259inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2156	NA	0	37	10	36
P-0049618-T01-IM6	SOMATIC	RARA	RARA	17	17	38510783	58915279	Intron of RARA(+):25bp after exon 7	Intron of BCAS3(+):30Kb after exon 7	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.1012+25:RARA_chr17:g.58915279inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	20404496	NA	0	89	10	111
P-0049618-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46252700	52041710	Exon 4 of NCOA3(+)	3-UTR of TSHZ2(+):240Kb after coding stop	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.129:NCOA3_chr20:g.52041710del	PRECISE		MANUAL_OK	3to5	-	5789010	NA	0	4	8	4
P-0049629-T01-IM6	SOMATIC	CASP8	CASP8	2	2	123308660	202123057	IGR: 796Kb before TSN(+)	Exon 1 of CASP8(+)	GRCh37	INVERSION	CASP8 (NM_001080125) rearrangement: c.103:CASP8_chr2:g.123308660inv	PRECISE		MANUAL_OK	5to5	-	78814397	NA	0	4	8	3
P-0049633-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56490309	56492693	Intron of RNF43(-):2Kb after exon 2	Exon 2 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.246_c.252+2378del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2384	NA	0	75	10	77
P-0049637-T01-IM6	SOMATIC	KANK1	MET	9	7	725428	116413312	Intron of KANK1(+):5Kb before exon 8	Intron of MET(+):1Kb after exon 14	GRCh37	TRANSLOCATION	KANK1 (NM_015158) - MET (NM_000245) fusion: t(7;9)(q31.2;p24.3)(chr7:g.116413312::chr9:g.725428)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KANK1:MET}	0	NA	0	47	10	52
P-0049638-T01-IM6	SOMATIC	CTNNB1	ANKRD28	3	3	15815039	41275664	Intron of ANKRD28(-):7Kb before exon 3	Exon 10 of CTNNB1(+)	GRCh37	INVERSION	CTNNB1 (NM_001904) - ANKRD28 (NM_015199) rearrangement: c.1559:CTNNB1_c.112-7220:ANKRD28inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CTNNB1:ANKRD28}	25460625	NA	0	15	10	14
P-0049640-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650417	149782214	Intron of ROS1(-):74bp after exon 32	Intron of CD74(-):26bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782214::chr6:g.117650417)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	16	10	16
P-0049640-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21895095	22008857	IGR: 72Kb before CDKN2A-AS1(+)	Exon 1 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.96:CDKN2B_chr9:g.21895095del	PRECISE		MANUAL_OK	3to5	-	113762	NA	0	28	10	28
P-0049684-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	116254326	151877842	3-UTR of LINC01510(-):548bp after coding stop	Exon 36 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.7103:KMT2C_chr7:g.116254326del	PRECISE		MANUAL_OK	3to5	-	35623516	NA	0	13	10	15
P-0019607-T04-IM6	SOMATIC	CALR	CALR	19	2	13054653	105170597	Exon 9 of CALR(+)	IGR: 66Kb before LINC01103(-)	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(2;19)(q12.1;p13.2)(chr2:g.105170597::chr19:g.13054653)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0041875-T03-IM6	SOMATIC	CEBPA	CEBPA	19	19	33469519	33793047	3-UTR of RHPN2(-):1Kb after coding stop	Exon 1 of CEBPA(-)	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.274:CEBPA_chr19:g.33469519inv	PRECISE		MANUAL_OK	5to5	-	323528	NA	0	8	10	8
P-0049461-T02-IM6	SOMATIC	CCDC6	RET	10	10	43611705	61615910	Intron of RET(+):326bp before exon 12	Intron of CCDC6(-):3Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-3450:CCDC6_c.2137-327:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18004205	NA	0	71	10	83
P-0049588-T01-IM6	SOMATIC	RET	CCDC6	10	10	43609437	61627682	Intron of RET(+):314bp after exon 10	Intron of CCDC6(-):15Kb before exon 2	GRCh37	INVERSION	RET (NM_020975) - CCDC6 (NM_005436) rearrangement: c.1879+314:RET_c.304-15222:CCDC6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RET:CCDC6}	18018245	NA	0	46	10	47
P-0049588-T01-IM6	SOMATIC	RET	RET	10	9	43610683	20531517	Intron of RET(+):499bp after exon 11	Intron of MLLT3(-):75Kb before exon 3	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(9;10)(p21.3;q11.21)(chr9:g.20531517::chr10:g.43610683)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	66	10	68
P-0049731-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191892	55223029	Intron of EGFR(+):18Kb before exon 2	Intron of EGFR(+):493bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-18087_c.890-494del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31137	NA	0	275	10	389
P-0049731-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268308	55271400	Intron of EGFR(+):202bp after exon 24	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+202_c.3271+1082del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3092	NA	0	22	10	22
P-0049734-T01-IM6	SOMATIC	ABL1	VAV3	9	1	133589782	108439901	Exon 1 of ABL1(+)	Intron of VAV3(-):22Kb before exon 2	GRCh37	TRANSLOCATION	ABL1 (NM_005157) - VAV3 (NM_006113) rearrangement: t(1;9)(p13.3;q24.12)(chr1:g.108439901::chr9:g.133589782)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ABL1:VAV3}	0	NA	0	34	10	34
P-0049736-T01-IM6	SOMATIC	FGF3	FGF3	13	11	27386379	69630985	IGR: 57Kb before GPR12(-)	Intron of FGF3(-):102bp after exon 2	GRCh37	TRANSLOCATION	FGF3 (NM_005247) rearrangement: t(11;13)(q13.3;q12.13)(chr11:g.69630985::chr13:g.27386379)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	46	10	46
P-0049736-T01-IM6	SOMATIC	MGA	MGA	18	15	10255316	42003270	IGR: 150Kb before LINC01254(-)	Exon 8 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(15;18)(q15.1;p11.22)(chr15:g.42003270::chr18:g.10255316)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	52	10	56
P-0049761-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55116272	55223177	Intron of EGFR(+):29Kb after exon 1	Intron of EGFR(+):345bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+29214_c.890-346del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	106905	NA	0	3	10	3
P-0049763-T01-IM6	SOMATIC	EZH1	EZH1	17	12	40865300	108659733	Exon 11 of EZH1(-)	IGR: 22Kb before CMKLR1(-)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(12;17)(q23.3;q21.2)(chr12:g.108659733::chr17:g.40865300)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	64	10	66
P-0049763-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	22008271	22033412	Intron of CDKN2B(-):525bp after exon 1	5-UTR of CDKN2B-AS1(+):88Kb before coding start	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.156+526:CDKN2B_chr9:g.22033412inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {CDKN2B:CDKN2B-AS1}	25141	NA	0	19	0	23
P-0049764-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11944433	12029431	Intron of ETV6(+):39Kb after exon 2	Intron of ETV6(+):7Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.163+38920_c.1009+6528dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	84998	NA	0	18	10	33
P-0049764-T01-IM6	SOMATIC	TP53	TP53	17	17	7577703	7581798	Intron of TP53(-):95bp before exon 7	5-UTR of TP53(-):9Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.673-95:TP53_chr17:g.7581798del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4095	NA	0	10	10	13
P-0049767-T01-IM6	SOMATIC	IRS2	IRS2	13	13	110406534	110436723	3-UTR of IRS2(-):2Kb after coding stop	Exon 1 of IRS2(-)	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.1678:IRS2_chr13:g.110406534del	PRECISE		MANUAL_OK	3to5	-	30189	NA	0	27	10	27
P-0049776-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212522542	212741270	Exon 16 of ERBB4(-)	Intron of ERBB4(-):71Kb after exon 3	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.421+70885_c.1883del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	218728	NA	0	37	10	38
P-0049782-T01-IM6	SOMATIC	DNMT1	TMC8	19	17	10260454	76130996	Intron of DNMT1(-):74bp after exon 24	Exon 9 of TMC8(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) - TMC8 (NM_152468) rearrangement: t(17;19)(q25.3;p13.2)(chr17:g.76130996::chr19:g.10260454)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DNMT1:TMC8}	0	NA	0	54	10	56
P-0049795-T01-IM6	SOMATIC	RAD54L	RAD54L	17	1	42742114	46738180	Intron of C17orf104(+):637bp before exon 4	Exon 12 of RAD54L(+)	GRCh37	TRANSLOCATION	RAD54L (NM_001142548) rearrangement: t(1;17)(p34.1;q21.31)(chr1:g.46738180::chr17:g.42742114)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	40	10	51
P-0049795-T01-IM6	SOMATIC	TP53	TP53	22	17	45835284	7579139	IGR: 26Kb before RIBC2(+)	Intron of TP53(-):172bp after exon 4	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;22)(p13.1;q13.31)(chr17:g.7579139::chr22:g.45835284)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0049798-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433268	49434372	Exon 32 of KMT2D(-)	Exon 31 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.7181_c.8179inv	PRECISE		MANUAL_OK	3to3	-	1104	NA	0	4	10	4
P-0049798-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226626	2227423	Exon 27 of DOT1L(+)	Intron of DOT1L(+):297bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4106_c.4606+297inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	797	NA	0	10	0	10
P-0049799-T01-IM6	SOMATIC	EED	EED	11	11	85956483	86488383	Intron of EED(+):98bp after exon 1	IGR: 14Kb before PRSS23(+)	GRCh37	DELETION	EED (NM_003797) rearrangement: c.114+98:EED_chr11:g.86488383del	PRECISE		MANUAL_OK	3to5	-	531900	NA	0	20	10	21
P-0049807-T01-IM6	SOMATIC	TERT	TERT	5	5	1271501	7735518	Intron of TERT(-):182bp before exon 8	Intron of ADCY2(+):8Kb after exon 14	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.2383-182:TERT_chr5:g.7735518del	PRECISE		MANUAL_OK	3to5	-	6464017	NA	0	10	5	10
P-0049789-T01-IM6	SOMATIC	PREX2	PREX2	11	8	55663374	69009227	IGR: 13Kb before TRIM51(+)	Intron of PREX2(+):24bp before exon 22	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(8;11)(q13.2;q11)(chr8:g.69009227::chr11:g.55663374)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	67	10	75
P-0049789-T01-IM6	SOMATIC	IGHMBP2	FGFR1	11	8	68697608	38275857	Intron of IGHMBP2(+):783bp after exon 8	Exon 11 of FGFR1(-)	GRCh37	TRANSLOCATION	IGHMBP2 (NM_002180) - FGFR1 (NM_001174067) fusion: t(8;11)(p11.23;q13.3)(chr8:g.38275857::chr11:g.68697608)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {IGHMBP2:FGFR1}	0	NA	0	148	10	152
P-0010183-T02-IM6	SOMATIC	CDKN2B	CDKN2A	9	9	21971218	22006197	Intron of CDKN2A(-):11bp before exon 2	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) - CDKN2A (NM_058195) rearrangement: c.206:CDKN2B_c.194-11:CDKN2Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDKN2B:CDKN2A}	34979	NA	0	158	0	208
P-0046749-T02-IM6	SOMATIC	TSC1	TSC1	9	9	135801229	135810074	Intron of TSC1(-):103bp before exon 5	5-UTR of TSC1(-):38Kb before coding start	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.211-103:TSC1_chr9:g.135810074del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	8845	NA	0	5	7	5
P-0048569-T02-IM6	SOMATIC	NTHL1	NTHL1	16	12	2093677	53347002	Exon 4 of NTHL1(-)	Promoter of KRT18(+):4Kb from tx start	GRCh37	TRANSLOCATION	NTHL1 (NM_002528) rearrangement: t(12;16)(q13.13;p13.3)(chr12:g.53347002::chr16:g.2093677)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NTHL1:KRT18}	0	NA	0	31	0	46
P-0049506-T02-IM6	SOMATIC	PAK1	FDX1	11	11	77069833	110310529	Intron of PAK1(-):109bp after exon 6	Intron of FDX1(+):4Kb after exon 2	GRCh37	INVERSION	PAK1 (NM_002576) - FDX1 (NM_004109) rearrangement: c.597+110:PAK1_c.310+3847:FDX1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAK1:FDX1}	33240696	NA	0	68	10	73
P-0049564-T01-IM6	SOMATIC	STAT5B	SKAP1	17	17	40359433	46371689	Intron of STAT5B(-):142bp after exon 16	Intron of SKAP1(-):52Kb after exon 4	GRCh37	DUPLICATION	STAT5B (NM_012448) - SKAP1 (NM_003726) rearrangement: c.2077+143:STAT5B_c.280+51578:SKAP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {STAT5B:SKAP1}	6012256	NA	0	19	10	20
P-0049565-T01-IM6	SOMATIC	THOP1	CALR	19	19	2805804	13051586	Intron of THOP1(+):630bp after exon 6	Exon 7 of CALR(+)	GRCh37	DELETION	THOP1 (NM_003249) - CALR (NM_004343) rearrangement: c.750+630:THOP1_c.845:CALRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {THOP1:CALR}	10245782	NA	0	6	10	6
P-0049566-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39932880	39934564	Exon 4 of BCOR(-)	Intron of BCOR(-):131bp before exon 4	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.166-131_c.1719del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1684	NA	0	5	8	5
P-0049600-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611613	51586611	Intron of RET(+):418bp before exon 12	Exon 11 of NCOA4(+)	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.1889:NCOA4_c.2137-419:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOA4:RET}	7974998	NA	0	53	10	60
P-0049601-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42843818	42852830	Exon 10 of TMPRSS2(-)	Intron of TMPRSS2(-):301bp before exon 6	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.557-301_c.1101inv	PRECISE		MANUAL_OK	3to3	-	9012	NA	0	43	10	55
P-0049610-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152032176	152332641	5-UTR of ESR1(+):97Kb before coding start	Intron of ESR1(+):149bp before exon 6	GRCh37	DELETION	ESR1 (NM_001122740) rearrangement: c.1097-150:ESR1_chr6:g.152032176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	300465	NA	0	2	10	2
P-0049610-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151816647	151845063	Intron of GALNT11(+):780bp after exon 10	Intron of KMT2C(-):54bp after exon 52	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.13894+55:KMT2C_chr7:g.151816647del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	28416	NA	0	66	10	67
P-0049669-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55114742	55223449	Intron of EGFR(+):28Kb after exon 1	Intron of EGFR(+):73bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+27684_c.890-74del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	108707	NA	0	8	10	8
P-0049677-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49443053	51463325	Intron of KMT2D(-):52bp before exon 12	Intron of CSRNP2(-):2Kb before exon 4	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.3907-52:KMT2D_chr12:g.51463325inv	PRECISE		MANUAL_OK	3to3	-	2020272	NA	0	43	10	43
P-0049679-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56419522	56434938	5-UTR of BZRAP1-AS1(+):12Kb before coding start	Exon 9 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.2199:RNF43_chr17:g.56419522del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	15416	NA	0	63	10	66
P-0014653-T03-IM6	SOMATIC	STAG2	STAG2	X	X	123195174	149735798	Exon 16 of STAG2(+)	Promoter of MTM1(+):1Kb from tx start	GRCh37	INVERSION	STAG2 (NM_001042749) rearrangement: c.1517:STAG2_chrX:g.149735798inv	PRECISE		MANUAL_OK	5to5	-	26540624	NA	0	2	10	6
P-0030151-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	118350583	118377220	Intron of KMT2A(+):305bp before exon 6	Exon 27 of KMT2A(+)	GRCh37	DUPLICATION	KMT2A (NM_001197104) rearrangement: c.3570-306_c.10613dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	26637	NA	0	3	5	3
P-0033709-T04-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8075444	77196937	Exon 3 of ERRFI1(-)	IGR: 136Kb before ST6GALNAC5(+)	GRCh37	DELETION	ERRFI1 (NM_018948) rearrangement: c.126:ERRFI1_chr1:g.77196937del	PRECISE		MANUAL_OK	3to5	-	69121493	NA	0	29	10	32
P-0045231-T02-IM6	SOMATIC	THSD4	CTCF	16	15	67654689	71907219	Exon 6 of CTCF(+)	Intron of THSD4(+):46Kb before exon 7	GRCh37	TRANSLOCATION	THSD4 (NM_024817) - CTCF (NM_006565) rearrangement: t(15;16)(q23;q22.1)(chr15:g.71907219::chr16:g.67654689)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {THSD4:CTCF}	0	NA	0	13	10	13
P-0045231-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44788695	44918443	Intron of KDM6A(+):32Kb before exon 3	Intron of KDM6A(+):48bp before exon 12	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.226-31834_c.975-49del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : out of frame	129748	NA	0	4	10	4
P-0047193-T02-IM6	SOMATIC	CD276	CD276	15	15	74003702	89160814	Intron of CD276(+):191bp after exon 9	IGR: 4Kb before AEN(+)	GRCh37	INVERSION	CD276 (NM_001024736) rearrangement: c.1582+191:CD276_chr15:g.89160814inv	PRECISE		MANUAL_OK	3to3	-	15157112	NA	0	7	10	7
P-0047744-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46185173	46246238	Intron of ARID2(+):20Kb before exon 4	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.285-20028_c.4332del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	61065	NA	0	17	10	17
P-0048433-T01-IM6	SOMATIC	NEGR1	NEGR1	1	1	72176987	72241985	Intron of NEGR1(-):13Kb before exon 4	Intron of NEGR1(-):5bp before exon 3	GRCh37	DUPLICATION	NEGR1 (NM_173808) rearrangement: c.410-5_c.536-13165dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	64998	NA	0	5	10	5
P-0049244-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72065144	72827620	IGR: 23Kb before DHODH(+)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8961:ZFHX3_chr16:g.72065144del	PRECISE		MANUAL_OK	3to5	-	762476	NA	0	7	6	8
P-0049244-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31369306	31376620	Intron of DNMT3B(+):86bp after exon 3	Intron of DNMT3B(+):39bp before exon 7	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.204+86_c.655-40inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7314	NA	0	38	10	37
P-0049545-T02-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264962	41266577	5-UTR of CTNNB1(+):597bp before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.374:CTNNB1_chr3:g.41264962del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1615	NA	0	77	10	83
P-0049846-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117875508	118200891	Intron of RAD21(-):10bp before exon 3	IGR: 54Kb before SLC30A8(+)	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.145-10:RAD21_chr8:g.118200891del	PRECISE		MANUAL_OK	3to5	-	325383	NA	0	42	10	43
P-0049867-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32906510	32907335	Exon 10 of BRCA2(+)	Exon 10 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.895_c.1720inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	825	NA	0	2	10	2
P-0049869-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12871152	12875422	Exon 1 of CDKN1B(+)	Promoter of CDKN1B(+):5Kb from tx start	GRCh37	INVERSION	CDKN1B (NM_004064) rearrangement: c.379:CDKN1B_chr12:g.12875422inv	PRECISE		MANUAL_OK	5to5	-	4270	NA	0	4	10	6
P-0049886-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39844262	42873996	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-3880:TMPRSS2_c.18+26025:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3029734	NA	0	62	10	63
P-0049902-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55203107	55222212	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):367bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-6872_c.889+367inv	PRECISE		MANUAL_OK	5to5	-	19105	NA	0	1001	10	2759
P-0049902-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268643	55271272	Intron of EGFR(+):237bp before exon 25	Intron of EGFR(+):954bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-238_c.3271+954del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2629	NA	0	7	10	8
P-0049938-T01-IM6	SOMATIC	RECQL	RECQL	12	1	21627727	84517611	Intron of RECQL(-):47bp after exon 12	IGR: 26Kb before PRKACB(+)	GRCh37	TRANSLOCATION	RECQL (NM_032941) rearrangement: t(1;12)(p31.1;p12.1)(chr1:g.84517611::chr12:g.21627727)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	31	10	31
P-0049939-T01-IM6	SOMATIC	KIT	KIT	4	1	55604661	234269491	Exon 21 of KIT(+)	Intron of SLC35F3(+):98Kb before exon 3	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(1;4)(q42.2;q12)(chr1:g.234269491::chr4:g.55604661)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	12	10	12
P-0049943-T01-IM6	SOMATIC	EFNA2	STK11	19	19	1220299	1297445	Intron of STK11(+):72bp before exon 4	Intron of EFNA2(+):1Kb before exon 3	GRCh37	DUPLICATION	EFNA2 (NM_001405) - STK11 (NM_000455) rearrangement: c.455-1105:EFNA2_c.465-73:STK11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EFNA2:STK11}	77146	NA	0	14	10	14
P-0049951-T01-IM6	SOMATIC	TPR	NTRK1	1	1	156844660	186320275	Intron of NTRK1(+):37bp before exon 11	Intron of TPR(-):186bp after exon 20	GRCh37	INVERSION	TPR (NM_003292) - NTRK1 (NM_002529) fusion: c.2610+187:TPR_c.1252-38:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPR:NTRK1}	29475615	NA	0	87	10	152
P-0049954-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32936581	32937622	Intron of BRCA2(+):78bp before exon 17	Exon 18 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.7806-79_c.8283del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1041	NA	0	10	10	10
P-0049957-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76949388	76949953	Exon 6 of ATRX(-)	Intron of ATRX(-):527bp before exon 6	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.371-527_c.409del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	565	NA	0	4	8	4
P-0049959-T01-IM6	SOMATIC	MEF2B	MEF2B	19	12	19257680	46501152	Exon 6 of MEF2B(-)	IGR: 76Kb before SLC38A1(-)	GRCh37	TRANSLOCATION	MEF2B (NM_001145785) rearrangement: t(12;19)(q13.11;p13.11)(chr12:g.46501152::chr19:g.19257680)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	193	10	190
P-0049966-T01-IM6	SOMATIC	TMPRSS2	ETV1	21	7	42872833	14007075	Intron of TMPRSS2(-):3Kb before exon 2	Intron of ETV1(-):10Kb after exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14007075::chr21:g.42872833)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV1}	0	NA	0	27	0	28
P-0049968-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	149459923	149479340	Intron of CSF1R(-):24bp before exon 4	5-UTR of CSF1R(-):46Kb before coding start	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.308-24:CSF1R_chr5:g.149479340del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	19417	NA	0	20	10	22
P-0049970-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120510244	120510763	Exon 8 of NOTCH2(-)	Exon 7 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.1201_c.1265del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	519	NA	0	10	0	10
P-0003787-T03-IM6	SOMATIC	JAK1	JAK1	1	1	65312107	65313172	Intron of JAK1(-):224bp after exon 14	Intron of JAK1(-):42bp after exon 13	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.1899+43_c.1987+225del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1065	NA	0	99	10	100
P-0003787-T03-IM6	SOMATIC	ZRSR2	ZRSR2	X	5	15826341	134533350	Intron of ZRSR2(+):14bp before exon 6	5-UTR of C5orf66(+):136Kb before coding start	GRCh37	TRANSLOCATION	ZRSR2 (NM_005089) rearrangement: t(5;X)(q31.1;p22.2)(chr5:g.134533350::chrX:g.15826341)	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {C5orf66:ZRSR2}	0	NA	0	9	0	9
P-0003787-T03-IM6	SOMATIC	ARAF	ARAF	X	X	47422458	55572301	Exon 2 of ARAF(+)	IGR: 61Kb before USP51(-)	GRCh37	DELETION	ARAF (NM_001654) rearrangement: c.92:ARAF_chrX:g.55572301del	IMPPRECISE		MANUAL_OK	3to5	-	8149843	NA	0	92	0	288
P-0033244-T03-IM6	SOMATIC	RRAS	RRAS	19	19	50130834	50140342	Promoter of PRR12(+):36Kb from tx start	Exon 2 of RRAS(-)	GRCh37	INVERSION	RRAS (NM_006270) rearrangement: c.199:RRAS_chr19:g.50130834inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRR12:RRAS}	9508	NA	0	5	0	5
P-0040655-T03-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	106545779	147785722	Exon 11 of PIK3CG(+)	Intron of CNTNAP2(+):29Kb before exon 16	GRCh37	INVERSION	PIK3CG (NM_002649) rearrangement: c.3256:PIK3CG_chr7:g.147785722inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	41239943	NA	0	36	10	36
P-0040655-T03-IM6	SOMATIC	CTTNBP2	KMT2C	7	7	117502320	151947983	Intron of CTTNBP2(-):950bp before exon 2	Exon 12 of KMT2C(-)	GRCh37	DUPLICATION	CTTNBP2 (NM_033427) - KMT2C (NM_170606) rearrangement: c.82-950:CTTNBP2_c.1690:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CTTNBP2:KMT2C}	34445663	NA	0	19	10	19
P-0049777-T01-IM6	SOMATIC	ALK	ALK	2	2	29456589	55625130	Intron of ALK(-):27bp before exon 14	Intron of CCDC88A(-):9Kb before exon 3	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.2356-27:ALK_chr2:g.55625130inv	PRECISE		MANUAL_OK	3to3	-	26168541	NA	0	5	7	5
P-0049777-T01-IM6	SOMATIC	HIST1H3E	HIST1H3E	6	6	10278247	26225641	IGR: 119Kb before TFAP2A(-)	Exon 1 of HIST1H3E(+)	GRCh37	DELETION	HIST1H3E (NM_003532) rearrangement: c.259:HIST1H3E_chr6:g.10278247del	PRECISE		MANUAL_OK	3to5	-	15947394	NA	0	5	10	5
P-0049862-T01-IM6	SOMATIC	PIK3CB	PIK3CB	3	2	138456617	28225959	Exon 4 of PIK3CB(-)	Intron of BRE(+):15Kb after exon 5	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(2;3)(p23.2;q22.3)(chr2:g.28225959::chr3:g.138456617)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	63	10	63
P-0049870-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123191242	123197792	Intron of STAG2(+):473bp before exon 15	Exon 20 of STAG2(+)	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1305-474_c.1916del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6550	NA	0	3	7	4
P-0049879-T01-IM6	SOMATIC	YAP1	YAP1	11	11	101984952	102679497	Exon 2 of YAP1(+)	5-UTR of WTAPP1(+):28Kb before coding start	GRCh37	INVERSION	YAP1 (NM_001130145) rearrangement: c.399:YAP1_chr11:g.102679497inv	PRECISE		MANUAL_OK	5to5	-	694545	NA	0	7	10	7
P-0005873-T02-IM6	SOMATIC	ROS1	ROS1	6	6	117541165	117645177	IGR: 46Kb before VGLL2(+)	Intron of ROS1(-):317bp after exon 34	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5641+318:ROS1_chr6:g.117541165del	PRECISE		MANUAL_OK	3to5	-	104012	NA	0	23	10	23
P-0018771-T04-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	28570592	32163297	IGR: 31Kb before ZBED9(-)	Exon 30 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.5929:NOTCH4_chr6:g.28570592inv	PRECISE		MANUAL_OK	3to3	-	3592705	NA	0	15	10	14
P-0019607-T06-IM6	SOMATIC	CALR	CALR	19	2	13054653	105170597	Exon 9 of CALR(+)	IGR: 66Kb before LINC01103(-)	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(2;19)(q12.1;p13.2)(chr2:g.105170597::chr19:g.13054653)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	41	10	42
P-0019607-T06-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	31401460	32180163	IGR: 29Kb before HCP5(+)	Intron of NOTCH4(-):87bp after exon 17	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.2680+88:NOTCH4_chr6:g.31401460inv	IMPPRECISE		MANUAL_OK	5to5	-	778703	NA	0	11	0	13
P-0019607-T06-IM6	SOMATIC	HGF	HGF	7	7	81358330	81358964	Intron of HGF(-):590bp after exon 8	Exon 8 of HGF(-)	GRCh37	DELETION	HGF (NM_000601) rearrangement: c.997_c.1040+591del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	634	NA	1	8	0	7
P-0023612-T02-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35862907	35873624	IGR: 8Kb before NFKBIA(-)	Exon 1 of NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.227:NFKBIA_chr14:g.35862907del	PRECISE		MANUAL_OK	3to5	-	10717	NA	0	74	10	89
P-0024083-T03-IM6	SOMATIC	INHA	INHA	2	2	37386053	220440232	Promoter of EIF2AK2(-):54Kb from tx start	Exon 2 of INHA(+)	GRCh37	INVERSION	INHA (NM_002191) rearrangement: c.1085:INHA_chr2:g.37386053inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {INHA:EIF2AK2}	183054179	NA	0	53	10	53
P-0024083-T03-IM6	SOMATIC	LAMA4	ESR1	6	6	112437814	152163649	Intron of LAMA4(-):618bp before exon 36	Intron of ESR1(+):82bp before exon 3	GRCh37	INVERSION	LAMA4 (NM_001105206) - ESR1 (NM_001122740) rearrangement: c.4982-618:LAMA4_c.453-83:ESR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LAMA4:ESR1}	39725835	NA	0	17	10	18
P-0027054-T03-IM6	SOMATIC	FGFR3	TACC3	4	4	1740527	1808898	Intron of TACC3(+):901bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2330:FGFR3_c.1942-902:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68371	NA	0	175	10	208
P-0030465-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	188632702	212522689	IGR: 268Kb before LINC01090(-)	Intron of ERBB4(-):136bp before exon 16	GRCh37	INVERSION	ERBB4 (NM_005235) rearrangement: c.1872-136:ERBB4_chr2:g.188632702inv	PRECISE		MANUAL_OK	5to5	-	23889987	NA	0	6	10	6
P-0031015-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39881074	42877493	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2384:TMPRSS2_c.40-63530:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996419	NA	0	17	10	25
P-0035076-T02-IM6	SOMATIC	ATM	ATM	11	11	108201422	108235944	Intron of ATM(+):274bp after exon 50	Exon 62 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.7515+274_c.8986del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	34522	NA	0	7	8	7
P-0038248-T04-IM6	SOMATIC	EWSR1	EWSR1	X	22	18240954	29683864	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):730bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.13)(chr22:g.29683864::chrX:g.18240954)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	77	10	51
P-0042583-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39962828	42869922	3-UTR of ERG(-):71Kb after coding stop	Intron of TMPRSS2(-):123bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+124:TMPRSS2_ERG:c.-149-5959del	PRECISE		MANUAL_OK	3to5	-	2907094	NA	0	27	10	30
P-0044940-T02-IM6	SOMATIC	XPO1	XPO1	2	2	61708456	61758621	Intron of XPO1(-):40bp before exon 24	Intron of XPO1(-):2Kb after exon 2	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.126+2286_c.2973-40del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 21 exons : out of frame	50165	NA	0	9	0	9
P-0044940-T02-IM6	SOMATIC	SOX17	SOX17	8	8	55370778	55388119	Exon 1 of SOX17(+)	IGR: 18Kb before SOX17(+)	GRCh37	INVERSION	SOX17 (NM_022454) rearrangement: c.80:SOX17_chr8:g.55388119inv	PRECISE		MANUAL_OK	3to3	-	17341	NA	0	12	10	12
P-0048329-T03-IM6	SOMATIC	DNMT1	DNMT1	19	19	10302726	10305557	Intron of DNMT1(-):3Kb after exon 1	Exon 1 of DNMT1(-)	GRCh37	DUPLICATION	DNMT1 (NM_001379) rearrangement: c.19_c.80+2770dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2831	NA	0	6	0	6
P-0048329-T03-IM6	SOMATIC	COX6B1	KMT2B	19	19	36144927	36212020	Intron of COX6B1(+):545bp before exon 3	Exon 3 of KMT2B(+)	GRCh37	DELETION	COX6B1 (NM_001863) - KMT2B (NM_014727) rearrangement: c.107-546:COX6B1_c.1771:KMT2Bdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {COX6B1:KMT2B}	67093	NA	0	9	0	10
P-0048329-T03-IM6	SOMATIC	NPM1	NPM1	5	5	170764983	170819664	IGR: 29Kb before TLX3(+)	Intron of NPM1(+):49bp before exon 5	GRCh37	DELETION	NPM1 (NM_002520) rearrangement: c.353-50:NPM1_chr5:g.170764983del	PRECISE		MANUAL_OK	3to5	-	54681	NA	0	12	10	13
P-0048711-T02-IM6	SOMATIC	CDC73	CDC73	1	1	192791467	193119396	IGR: 13Kb before RGS2(+)	Intron of CDC73(+):37bp before exon 9	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.829-38:CDC73_chr1:g.192791467del	PRECISE		MANUAL_OK	3to5	-	327929	NA	0	64	10	65
P-0048711-T02-IM6	SOMATIC	FGF19	CPT1A	11	11	68572320	69518465	Intron of CPT1A(-):751bp before exon 5	Exon 1 of FGF19(-)	GRCh37	DELETION	FGF19 (NM_005117) - CPT1A (NM_001876) rearrangement: c.180:FGF19_c.454-751:CPT1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGF19:CPT1A}	946145	NA	0	100	10	158
P-0049308-T02-IM6	SOMATIC	TERT	TERT	5	5	1264721	20081454	Intron of TERT(-):14bp before exon 11	5-UTR of CDH18(-):608Kb before coding start	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.2655-14:TERT_chr5:g.20081454inv	PRECISE		MANUAL_OK	3to3	-	18816733	NA	0	11	10	11
P-0049830-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29685150	51199670	Intron of EWSR1(+):375bp after exon 9	Intron of ATF1(+):4Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51199670::chr22:g.29685150)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	37	10	43
P-0049917-T01-IM6	SOMATIC	KREMEN1	EWSR1	22	22	29480309	29686863	Intron of KREMEN1(+):10Kb before exon 2	Intron of EWSR1(+):690bp before exon 10	GRCh37	DELETION	KREMEN1 (NM_032045) - EWSR1 (NM_013986) rearrangement: c.98-9937:KREMEN1_c.993-691:EWSR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KREMEN1:EWSR1}	206554	NA	0	43	10	46
P-0049919-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32169965	32929127	Exon 21 of NOTCH4(-)	IGR: 7Kb before BRD2(+)	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.3643:NOTCH4_chr6:g.32929127del	PRECISE		MANUAL_OK	3to5	-	759162	NA	0	98	10	107
P-0049920-T01-IM6	SOMATIC	DICER1	DICER1	14	14	95473904	95560203	IGR: 79Kb before DICER1(-)	Intron of DICER1(-):21bp after exon 26	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.5364+22:DICER1_chr14:g.95473904del	PRECISE		MANUAL_OK	3to5	-	86299	NA	0	46	10	46
P-0049921-T01-IM6	SOMATIC	CARM1	CARM1	19	19	10959120	11032393	5-UTR of C19orf38(+):64bp before coding start	Exon 16 of CARM1(+)	GRCh37	DELETION	CARM1 (NM_199141) rearrangement: c.1787:CARM1_chr19:g.10959120del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {C19orf38:CARM1}	73273	NA	0	23	10	23
P-0049921-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2956664	2958853	Intron of CARD11(-):259bp after exon 20	Intron of CARD11(-):152bp after exon 18	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.2510+153_c.2703+260del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2189	NA	0	21	10	21
P-0049925-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138545584	140489497	Intron of KIAA1549(-):300bp after exon 16	Intron of BRAF(-):2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5247+301:KIAA1549_c.1141-2113:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1943913	NA	0	48	10	50
P-0049927-T01-IM6	SOMATIC	SPEN	RSC1A1	1	1	15987862	16254650	Exon 1 of RSC1A1(+)	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - RSC1A1 (NM_006511) rearrangement: c.1915:SPEN_c.1499:RSC1A1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:RSC1A1}	266788	NA	0	49	10	50
P-0049933-T01-IM6	SOMATIC	B2M	B2M	15	15	45006084	45007982	Intron of B2M(+):2Kb before exon 2	Intron of B2M(+):83bp after exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-1537_c.346+83del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1898	NA	0	3	4	3
P-0049933-T01-IM6	SOMATIC	DUSP4	DUSP4	8	6	29207538	132934535	Exon 1 of DUSP4(-)	IGR: 4Kb before TAAR2(-)	GRCh37	TRANSLOCATION	DUSP4 (NM_001394) rearrangement: t(6;8)(q23.2;p12)(chr6:g.132934535::chr8:g.29207538)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	71	10	71
P-0049963-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42854321	42872734	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2618_c.557-1792inv	PRECISE		MANUAL_OK	3to3	-	18413	NA	0	4	10	4
P-0049979-T01-IM6	SOMATIC	DAXX	DAXX	6	1	33286569	156682800	Exon 8 of DAXX(-)	IGR: 10Kb before ISG20L2(-)	GRCh37	TRANSLOCATION	DAXX (NM_001141970) rearrangement: t(1;6)(q23.1;p21.32)(chr1:g.156682800::chr6:g.33286569)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	86	10	93
P-0049985-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39842239	42875087	Intron of ERG(-):25Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4790:TMPRSS2_c.19-24695:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3032848	NA	0	14	10	15
P-0049986-T01-IM6	SOMATIC	STAT5B	STAT5B	17	3	40384144	45058637	Exon 2 of STAT5B(-)	IGR: 9Kb before CLEC3B(+)	GRCh37	TRANSLOCATION	STAT5B (NM_012448) rearrangement: t(3;17)(p21.31;q21.2)(chr3:g.45058637::chr17:g.40384144)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0049987-T01-IM6	SOMATIC	NOTCH1	NOTCH1	19	9	44637014	139409692	3-UTR of ZNF225(+):17Kb after coding stop	Intron of NOTCH1(-):49bp after exon 12	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;19)(q34.3;q13.31)(chr9:g.139409692::chr19:g.44637014)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	48	10	58
P-0049987-T01-IM6	SOMATIC	RBM10	RBM10	X	9	47039565	88037477	Intron of RBM10(+):45bp before exon 11	IGR: 124Kb before AGTPBP1(-)	GRCh37	TRANSLOCATION	RBM10 (NM_001204468) rearrangement: t(9;X)(q21.33;p11.23)(chr9:g.88037477::chrX:g.47039565)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	17
P-0049988-T01-IM6	SOMATIC	NEGR1	NEGR1	16	1	11348618	71924675	3-UTR of SOCS1(-):81bp after coding stop	Intron of NEGR1(-):51Kb before exon 7	GRCh37	TRANSLOCATION	NEGR1 (NM_173808) rearrangement: t(1;16)(p31.1;p13.13)(chr1:g.71924675::chr16:g.11348618)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	15
P-0049993-T01-IM6	SOMATIC	RB1	RB1	13	13	48900538	48921971	Intron of RB1(+):16Kb before exon 3	Exon 5 of RB1(+)	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.265-16197_c.511dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	21433	NA	0	20	10	26
P-0050000-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	36507144	38145870	IGR: 135Kb before KCNU1(+)	Intron of WHSC1L1(-):134bp after exon 19	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.3501+135:WHSC1L1_chr8:g.36507144del	PRECISE		MANUAL_OK	3to5	-	1638726	NA	0	7	10	7
P-0050009-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	108908197	123242052	Intron of SORCS1(-):16Kb after exon 1	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2301+1160:FGFR2_chr10:g.108908197inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	14333855	NA	1	159	10	196
P-0050054-T01-IM6	SOMATIC	STK11	STK11	19	19	1207151	1240107	Exon 1 of STK11(+)	Promoter of ATP5D(+):2Kb from tx start	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.239:STK11_chr19:g.1240107del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STK11:ATP5D}	32956	NA	0	14	10	15
P-0050056-T01-IM6	SOMATIC	CBL	CBL	11	11	119148985	119149572	Exon 8 of CBL(+)	Intron of CBL(+):149bp after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1205_c.1431+149del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	587	NA	0	9	10	10
P-0050057-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3781502	48684326	Intron of CREBBP(-):28bp before exon 30	IGR: 112Kb before N4BP1(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.4891-28:CREBBP_chr16:g.48684326del	PRECISE		MANUAL_OK	3to5	-	44902824	NA	0	4	5	4
P-0050058-T01-IM6	SOMATIC	FOXP1	FOXP1	5	3	96973852	71026977	5-UTR of LINC01340(+):33Kb before coding start	Intron of FOXP1(-):1bp after exon 11	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) rearrangement: t(3;5)(p13;q15)(chr3:g.71026977::chr5:g.96973852)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	48	10	48
P-0050065-T01-IM6	SOMATIC	SETD2	SETD2	3	3	47058024	47058616	3-UTR of SETD2(-):558bp after coding stop	Exon 21 of SETD2(-)	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement: c.7662:SETD2_chr3:g.47058024inv	PRECISE		MANUAL_OK	3to3	-	592	NA	0	12	10	12
P-0050067-T01-IM6	SOMATIC	RPS6KA4	SLC22A9	11	11	63159474	64137930	Intron of SLC22A9(+):10Kb after exon 6	Intron of RPS6KA4(+):74bp after exon 15	GRCh37	DUPLICATION	RPS6KA4 (NM_003942) - SLC22A9 (NM_080866) rearrangement: c.1957+74:RPS6KA4_c.1073+9725:SLC22A9dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RPS6KA4:SLC22A9}	978456	NA	0	107	10	116
P-0050086-T01-IM6	SOMATIC	ERG	ERG	21	21	28329679	39870244	Intron of ADAMTS5(-):2Kb before exon 2	Intron of ERG(-):42bp after exon 1	GRCh37	INVERSION	ERG (NM_182918) rearrangement: c.18+43:ERG_chr21:g.28329679inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11540565	NA	0	12	10	15
P-0050088-T01-IM6	SOMATIC	RNF43	CLTC	17	17	56440822	57721004	Intron of RNF43(-):55bp before exon 5	Intron of CLTC(+):632bp before exon 2	GRCh37	INVERSION	RNF43 (NM_017763) - CLTC (NM_004859) rearrangement: c.451-55:RNF43_c.43-633:CLTCinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RNF43:CLTC}	1280182	NA	0	8	0	8
P-0050109-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55148182	55223339	Intron of EGFR(+):61Kb after exon 1	Intron of EGFR(+):183bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+61124_c.890-184del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	75157	NA	0	90	10	97
P-0050109-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268867	55269999	Intron of EGFR(+):13bp before exon 25	Intron of EGFR(+):210bp before exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-14_c.3163-211del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1132	NA	0	14	10	14
P-0050112-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187584655	187586110	Exon 3 of FAT1(-)	Intron of FAT1(-):1Kb before exon 3	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.3266-1343_c.3378inv	IMPPRECISE		MANUAL_OK	3to3	-	1455	NA	0	43	0	44
P-0050114-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27100132	235098599	Exon 16 of ARID1A(+)	3-UTR of LOC101927851(-):1Kb after coding stop	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3928:ARID1A_chr1:g.235098599del	PRECISE		MANUAL_OK	3to5	-	207998467	NA	0	24	10	24
P-0050121-T01-IM6	SOMATIC	YWHAZ	CTNNB1	8	3	101953077	41266706	Intron of YWHAZ(-):8Kb after exon 2	Intron of CTNNB1(+):8bp after exon 4	GRCh37	TRANSLOCATION	YWHAZ (NM_001135699) - CTNNB1 (NM_001904) rearrangement: t(3;8)(p22.1;q22.3)(chr3:g.41266706::chr8:g.101953077)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {YWHAZ:CTNNB1}	0	NA	0	10	10	10
P-0050123-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11985046	12016860	Intron of MAP2K4(+):199bp after exon 3	Intron of MAP2K4(+):183bp after exon 7	GRCh37	DUPLICATION	MAP2K4 (NM_003010) rearrangement: c.393+199_c.813+183dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	31814	NA	0	17	9	16
P-0050123-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40094251	42867209	IGR: 17Kb before LINC00114(-)	Intron of TMPRSS2(-):704bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-704:TMPRSS2_chr21:g.40094251del	PRECISE		MANUAL_OK	3to5	-	2772958	NA	0	28	10	36
P-0050136-T01-IM6	SOMATIC	TSC2	RHOA	16	3	2121837	49404227	Exon 19 of TSC2(+)	Intron of RHOA(-):2Kb after exon 3	GRCh37	TRANSLOCATION	TSC2 (NM_000548) - RHOA (NM_001664) rearrangement: t(3;16)(p21.31;p13.3)(chr3:g.49404227::chr16:g.2121837)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TSC2:RHOA}	0	NA	0	37	10	37
P-0050136-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741707	1808922	Exon 12 of TACC3(+)	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2354:FGFR3_c.2040:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67215	NA	0	120	0	123
P-0050136-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	4054768	21974346	Intron of GLIS3(-):63Kb after exon 4	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-3139:CDKN2A_chr9:g.4054768inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	17919578	NA	0	17	10	17
P-0050148-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89824272	89831120	Intron of FANCA(-):712bp after exon 30	Intron of FANCA(-):177bp after exon 28	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.2778+178_c.2981+713del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	6848	NA	0	8	10	8
P-0050148-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212411888	212537939	Intron of ERBB4(-):15Kb after exon 20	Exon 14 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.1666_c.2487+14740del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	126051	NA	0	18	10	19
P-0050153-T01-IM6	SOMATIC	TP53	TP53	17	17	7577001	7581384	Intron of TP53(-):17bp after exon 8	5-UTR of TP53(-):8Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.919+18:TP53_chr17:g.7581384inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4383	NA	0	15	10	22
P-0050187-T01-IM6	SOMATIC	SOX17	SOX17	8	8	55371006	55373335	Intron of SOX17(+):1bp after exon 1	3-UTR of SOX17(+):3Kb after coding stop	GRCh37	DELETION	SOX17 (NM_022454) rearrangement: c.307+1:SOX17_chr8:g.55373335del	PRECISE		MANUAL_OK	3to5	-	2329	NA	0	36	10	38
P-0050196-T01-IM6	SOMATIC	DBI	BRAF	7	2	140486284	120128894	Intron of BRAF(-):1Kb after exon 9	Intron of DBI(+):516bp after exon 3	GRCh37	TRANSLOCATION	DBI (NM_001178017) - BRAF (NM_004333) fusion: t(2;7)(q14.2;q34)(chr2:g.120128894::chr7:g.140486284)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {DBI:BRAF}	0	NA	1	229	10	224
P-0050209-T01-IM6	SOMATIC	RAD51	RAD51	15	15	40606005	41021758	IGR: 10Kb before INAFM2(+)	Exon 8 of RAD51(+)	GRCh37	DELETION	RAD51 (NM_002875) rearrangement: c.700:RAD51_chr15:g.40606005del	PRECISE		MANUAL_OK	3to5	-	415753	NA	0	22	10	22
P-0050212-T01-IM6	SOMATIC	NF1	NF1	17	11	29528297	47515061	Intron of NF1(+):120bp after exon 10	Intron of CELF1(-):4Kb before exon 4	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(11;17)(p11.2;q11.2)(chr11:g.47515061::chr17:g.29528297)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NF1:CELF1}	0	NA	0	18	10	23
P-0050234-T01-IM6	SOMATIC	RB1	RB1	13	13	48919410	48924847	Intron of RB1(+):75bp after exon 4	Intron of RB1(+):2Kb after exon 6	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.500+75_c.607+1688del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	5437	NA	0	12	0	12
P-0050236-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15350007	15355737	Exon 18 of BRD4(-)	Intron of BRD4(-):164bp before exon 12	GRCh37	DUPLICATION	BRD4 (NM_058243) rearrangement: c.2159-164_c.3645dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5730	NA	0	54	10	59
P-0050236-T01-IM6	SOMATIC	ARID1A	ARID1A	8	1	73774319	27088963	Intron of KCNB2(+):74Kb before exon 3	Intron of ARID1A(+):153bp after exon 7	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;8)(p36.11;q13.3)(chr1:g.27088963::chr8:g.73774319)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	5	9	4
P-0050249-T01-IM6	SOMATIC	PTEN	PTEN	10	10	88753165	89690709	5-UTR of AGAP11(+):8Kb before coding start	Intron of PTEN(+):93bp before exon 4	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.210-94:PTEN_chr10:g.88753165inv	PRECISE		MANUAL_OK	5to5	-	937544	NA	0	14	10	15
P-0050249-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39837619	42878888	Intron of ERG(-):20Kb before exon 2	Intron of TMPRSS2(-):988bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+989:TMPRSS2_c.19-20075:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3041269	NA	0	58	10	60
P-0050250-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971107	21975739	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):5Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-4532_c.294del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4632	NA	0	12	10	16
P-0050253-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12006046	12018875	Intron of ETV6(+):314bp before exon 4	Intron of ETV6(+):3Kb before exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.329-315_c.464-3483dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	12829	NA	0	33	10	37
P-0050255-T01-IM6	SOMATIC	NF1	NF1	17	17	29552192	37786189	Exon 17 of NF1(+)	Intron of PPP1R1B(+):35bp before exon 4	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.1925:NF1_chr17:g.37786189inv	PRECISE		MANUAL_OK	5to5	-	8233997	NA	0	13	10	13
P-0050255-T01-IM6	SOMATIC	NF1	NF1	22	17	45093854	29553687	Intron of PRR5(+):5Kb before exon 3	Exon 18 of NF1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;22)(q11.2;q13.31)(chr17:g.29553687::chr22:g.45093854)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	14	0	14
P-0050257-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72795899	72831645	IGR: 21Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.4936:ZFHX3_chr16:g.72795899del	IMPPRECISE		MANUAL_OK	3to5	-	35746	NA	0	5	0	5
P-0050260-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123176441	123212111	Exon 7 of STAG2(+)	Intron of STAG2(+):203bp after exon 27	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.408_c.2775+203dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	35670	NA	0	53	10	54
P-0050264-T01-IM6	SOMATIC	JAK3	JAK3	19	1	17952430	9448228	Intron of JAK3(-):18bp after exon 7	IGR: 37Kb before LOC100506022(-)	GRCh37	TRANSLOCATION	JAK3 (NM_000215) rearrangement: t(1;19)(p36.22;p13.11)(chr1:g.9448228::chr19:g.17952430)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	9	10	10
P-0050265-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117660253	117690531	Intron of ROS1(-):2Kb before exon 31	Intron of ROS1(-):3Kb before exon 18	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.2598-3078_c.5080-1750del	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	30278	NA	0	74	10	88
P-0050265-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117746451	117761490	Intron of ROS1(-):245bp after exon 1	IGR: 42Kb before DCBLD1(+)	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.123+246:ROS1_chr6:g.117761490inv	PRECISE		MANUAL_OK	5to5	-	15039	NA	0	3	10	7
P-0050273-T01-IM6	SOMATIC	MDC1	PTP4A2	6	1	30672877	32374732	Exon 10 of MDC1(-)	Intron of PTP4A2(-):171bp before exon 4	GRCh37	TRANSLOCATION	MDC1 (NM_014641) - PTP4A2 (NM_080391) rearrangement: t(1;6)(p35.2;p21.33)(chr1:g.32374732::chr6:g.30672877)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MDC1:PTP4A2}	0	NA	0	9	10	13
P-0050274-T01-IM6	SOMATIC	ZNF92	CDK6	7	7	64857555	92300903	Intron of ZNF92(+):4Kb after exon 3	Intron of CDK6(-):54bp before exon 5	GRCh37	INVERSION	ZNF92 (NM_152626) - CDK6 (NM_001145306) rearrangement: c.226+3741:ZNF92_c.538-54:CDK6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ZNF92:CDK6}	27443348	NA	0	6	10	6
P-0050276-T01-IM6	SOMATIC	DOT1L	AP3D1	19	19	2149476	2210830	Intron of AP3D1(-):2Kb after exon 1	Exon 14 of DOT1L(+)	GRCh37	INVERSION	DOT1L (NM_032482) - AP3D1 (NM_003938) rearrangement: c.1327:DOT1L_c.96+1762:AP3D1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {DOT1L:AP3D1}	61354	NA	0	37	10	40
P-0050279-T01-IM6	SOMATIC	KREMEN1	NF2	22	22	29526557	30074216	Intron of KREMEN1(+):5Kb after exon 5	Exon 14 of NF2(+)	GRCh37	DELETION	KREMEN1 (NM_032045) - NF2 (NM_000268) rearrangement: c.631+5153:KREMEN1_c.1478:NF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KREMEN1:NF2}	547659	NA	0	5	10	5
P-0050279-T01-IM6	SOMATIC	NF2	NF2	22	22	30051706	30053354	Intron of NF2(+):41bp after exon 6	Intron of NF2(+):823bp before exon 7	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.599+41_c.600-824inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1648	NA	0	9	10	9
P-0050285-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39893957	42870262	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):146bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-146:TMPRSS2_c.39+53629:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2976305	NA	0	45	10	45
P-0050286-T01-IM6	SOMATIC	FLT4	FLT4	5	5	144857146	180038406	IGR: 279Kb before PRELID2(-)	Exon 27 of FLT4(-)	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.3611:FLT4_chr5:g.144857146inv	PRECISE		MANUAL_OK	5to5	-	35181260	NA	0	13	10	15
P-0050287-T01-IM6	SOMATIC	RTEL1	RTEL1	20	15	62294311	35739770	Intron of RTEL1(+):69bp after exon 6	Intron of DPH6(-):3Kb after exon 5	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(15;20)(q14;q13.33)(chr15:g.35739770::chr20:g.62294311)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RTEL1:DPH6}	0	NA	0	43	0	43
P-0050287-T01-IM6	SOMATIC	RBM10	RBM10	X	X	46563095	47044825	Intron of SLC9A7(-):21Kb before exon 2	Intron of RBM10(+):15bp before exon 20	GRCh37	DUPLICATION	RBM10 (NM_001204468) rearrangement: c.2362-16:RBM10_chrX:g.46563095dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	481730	NA	0	53	10	56
P-0050289-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876747	42872737	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-2621:TMPRSS2_c.40-59203:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2995990	NA	0	73	10	74
P-0050309-T01-IM6	SOMATIC	NAB2	NAB2	12	2	57487915	17948133	Intron of NAB2(+):479bp before exon 7	Intron of GEN1(+):177bp after exon 5	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(2;12)(p24.2;q13.3)(chr2:g.17948133::chr12:g.57487915)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	257	0	366
P-0050350-T01-IM6	SOMATIC	NKX3	NKX3-1	17	8	41654143	23539161	IGR: 49Kb before ETV4(-)	Intron of NKX3-1(-):9bp before exon 2	GRCh37	TRANSLOCATION	NKX3-1 (NM_006167) rearrangement: t(8;17)(p21.2;q21.31)(chr8:g.23539161::chr17:g.41654143)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	8
P-0050351-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12024458	22933086	Intron of ETV6(+):2Kb after exon 5	IGR: 155Kb before ETNK1(+)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.1009+1555:ETV6_chr12:g.22933086inv	IMPPRECISE		MANUAL_OK	5to5	-	10908628	NA	0	6	0	7
P-0050351-T01-IM6	SOMATIC	CLEC1A	CCNE1	19	12	30314505	10234241	Intron of CCNE1(+):56bp before exon 12	Intron of CLEC1A(-):229bp before exon 3	GRCh37	TRANSLOCATION	CLEC1A (NM_016511) - CCNE1 (NM_001238) rearrangement: t(12;19)(p13.2;q12)(chr12:g.10234241::chr19:g.30314505)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CLEC1A:CCNE1}	0	NA	0	9	10	9
P-0050351-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	5198769	5212295	IGR: 7Kb before PTPRS(-)	Intron of PTPRS(-):34bp before exon 32	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.4770-34:PTPRS_chr19:g.5198769inv	PRECISE		MANUAL_OK	5to5	-	13526	NA	0	10	10	11
P-0050351-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15295110	43041943	Exon 16 of NOTCH3(-)	5-UTR of LIPE-AS1(+):115Kb before coding start	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.2562:NOTCH3_chr19:g.43041943inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH3:LIPE-AS1}	27746833	NA	0	5	0	5
P-0050351-T01-IM6	SOMATIC	MYC	MYC	8	8	128750907	129109519	Exon 2 of MYC(+)	5-UTR of PVT1(+):4Kb before coding start	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.444:MYC_chr8:g.129109519del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MYC:PVT1}	358612	NA	0	6	10	6
P-0050352-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39936486	42875305	Intron of ERG(-):11Kb after exon 3	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4572:TMPRSS2_c.39+11100:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2938819	NA	0	20	10	20
P-0050392-T01-IM6	SOMATIC	GSK3B	GSK3B	3	3	119585458	119586226	Exon 9 of GSK3B(-)	Intron of GSK3B(-):751bp before exon 9	GRCh37	INVERSION	GSK3B (NM_002093) rearrangement: c.910-751_c.927inv	PRECISE		MANUAL_OK	3to3	-	768	NA	0	2	7	3
P-0050393-T01-IM6	SOMATIC	INPP4A	INPP4A	15	2	47977286	99204021	5-UTR of SEMA6D(+):75Kb before coding start	Exon 26 of INPP4A(+)	GRCh37	TRANSLOCATION	INPP4A (NM_001134224) rearrangement: t(2;15)(q11.2;q21.1)(chr2:g.99204021::chr15:g.47977286)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	8	5
P-0050395-T01-IM6	SOMATIC	NBN	NBN	8	8	90970862	90986322	Intron of NBN(-):90bp after exon 9	Intron of NBN(-):3Kb before exon 6	GRCh37	DUPLICATION	NBN (NM_002485) rearrangement: c.585-2804_c.1124+91dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	15460	NA	0	22	10	23
P-0050403-T01-IM6	SOMATIC	KRT20	ERBB2	17	17	37866770	39034373	Intron of ERBB2(+):36bp after exon 7	Intron of KRT20(-):23bp after exon 6	GRCh37	INVERSION	KRT20 (NM_019010) - ERBB2 (NM_004448) fusion: c.1139+24:KRT20_c.901+36:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KRT20:ERBB2}	1167603	NA	0	3	10	4
P-0050403-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883881	37897542	Intron of ERBB2(+):60bp before exon 27	Intron of GRB7(+):962bp before exon 2	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3413-61:ERBB2_chr17:g.37897542del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ERBB2:GRB7}	13661	NA	0	115	10	128
P-0050407-T01-IM6	SOMATIC	KMT2C	PRKAG2	7	7	151486001	151836076	Intron of PRKAG2(-):2Kb before exon 2	Intron of KMT2C(-):87bp before exon 58	GRCh37	DELETION	KMT2C (NM_170606) - PRKAG2 (NM_016203) rearrangement: c.14535-87:KMT2C_c.115-2374:PRKAG2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KMT2C:PRKAG2}	350075	NA	0	15	10	15
P-0050408-T01-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48891876	79965010	Intron of TFE3(-):110bp before exon 6	Intron of ASPSCR1(+):2Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) rearrangement: t(17;X)(q25.3;p11.23)(chr17:g.79965010::chrX:g.48891876)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	36	10	36
P-0050415-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061244	38101340	Exon 2 of FOXA1(-)	IGR: 43Kb before FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.745:FOXA1_chr14:g.38101340del	PRECISE		MANUAL_OK	3to5	-	40096	NA	0	61	10	62
P-0050433-T01-IM6	SOMATIC	FGFR4	EYS	6	5	65813208	176523102	Intron of EYS(-):46Kb before exon 13	Exon 14 of FGFR4(+)	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) - EYS (NM_001142800) rearrangement: t(5;6)(q35.2;q12)(chr5:g.176523102::chr6:g.65813208)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FGFR4:EYS}	0	NA	0	30	10	30
P-0050433-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39909892	39934323	Promoter of BCOR(-):606bp from tx start	Exon 4 of BCOR(-)	GRCh37	INVERSION	BCOR (NM_001123385) rearrangement: c.276:BCOR_chrX:g.39909892inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	24431	NA	0	10	10	10
P-0050435-T01-IM6	SOMATIC	RARA	RARA	17	17	38506001	48311315	Intron of RARA(+):34bp before exon 4	IGR: 19Kb before LOC101927230(+)	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.328-35:RARA_chr17:g.48311315inv	PRECISE		MANUAL_OK	5to5	-	9805314	NA	0	79	10	86
P-0050445-T01-IM6	SOMATIC	FANCA	FANCA	16	16	50248117	89877899	Intron of PAPD5(+):14bp before exon 4	Intron of FANCA(-):420bp before exon 4	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.284-420:FANCA_chr16:g.50248117del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	39629782	NA	0	33	10	33
P-0050445-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864235	42874836	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-4720:TMPRSS2_c.18+6052:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3010601	NA	0	9	0	10
P-0000941-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31043478	31375479	Intron of NOL4L(-):442bp after exon 3	Intron of DNMT3B(+):222bp after exon 6	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.654+222:DNMT3B_chr20:g.31043478inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {DNMT3B:NOL4L}	332001	NA	0	33	0	32
P-0000941-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1740441	1808894	Intron of TACC3(+):987bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2326:FGFR3_c.1942-988:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68453	NA	0	232	10	252
P-0031137-T02-IM6	SOMATIC	AR	AR	X	X	66931500	66973040	Exon 4 of AR(+)	IGR: 184Kb before AR(+)	GRCh37	INVERSION	AR (NM_000044) rearrangement: c.2142:AR_chrX:g.66973040inv	PRECISE		MANUAL_OK	3to3	-	41540	NA	0	17	10	15
P-0036748-T02-IM6	SOMATIC	NCOR1	NCOR1	20	17	2327385	15983421	IGR: 34Kb before TGM6(+)	Intron of NCOR1(-):43bp before exon 26	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(17;20)(p12;p13)(chr17:g.15983421::chr20:g.2327385)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	22
P-0049848-T01-IM6	SOMATIC	RB1	RB1	13	13	48916684	48921159	Intron of RB1(+):50bp before exon 3	Intron of RB1(+):801bp before exon 5	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.265-51_c.501-802dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	4475	NA	0	94	10	97
P-0049848-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143235885	143264536	Exon 8 of INPP4B(-)	Intron of INPP4B(-):29Kb before exon 8	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.373-28621_c.403del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28651	NA	0	23	10	24
P-0050027-T02-IM6	SOMATIC	FLI1	EWSR1	22	11	29683917	128669484	Intron of EWSR1(+):677bp before exon 9	Intron of FLI1(+):6Kb before exon 6	GRCh37	TRANSLOCATION	FLI1 (NM_002017) - EWSR1 (NM_013986) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128669484::chr22:g.29683917)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FLI1:EWSR1}	0	NA	0	38	10	38
P-0050299-T02-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430868	78448235	Exon 8 of FUBP1(-)	IGR: 22Kb before DNAJB4(+)	GRCh37	INVERSION	FUBP1 (NM_003902) rearrangement: c.521:FUBP1_chr1:g.78448235inv	PRECISE		MANUAL_OK	3to3	-	17367	NA	0	53	10	53
P-0050299-T02-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52709045	52721258	Intron of PPP2R1A(+):170bp before exon 3	Intron of PPP2R1A(+):1Kb after exon 9	GRCh37	DUPLICATION	PPP2R1A (NM_014225) rearrangement: c.170-171_c.1128+1342dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : out of frame	12213	NA	0	9	10	10
P-0050452-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31382194	31386304	Intron of DNMT3B(+):793bp after exon 10	Exon 15 of DNMT3B(+)	GRCh37	DUPLICATION	DNMT3B (NM_006892) rearrangement: c.1126+793_c.1529dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4110	NA	0	33	10	37
P-0050454-T01-IM6	SOMATIC	CD79B	CD79B	17	17	62005175	62006601	Promoter of CD79B(-):922bp from tx start	Exon 6 of CD79B(-)	GRCh37	DELETION	CD79B (NM_001039933) rearrangement: c.678:CD79B_chr17:g.62005175del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1426	NA	0	7	10	7
P-0050488-T01-IM6	SOMATIC	NSD1	NSD1	5	1	176678821	121484679	Exon 12 of NSD1(+)	IGR: 224Kb before EMBP1(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(1;5)(p11.2;q35.3)(chr1:g.121484679::chr5:g.176678821)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	13
P-0050495-T01-IM6	SOMATIC	SHQ1	SHQ1	8	3	42218035	72861734	Intron of POLB(+):777bp before exon 10	Intron of SHQ1(-):87bp after exon 9	GRCh37	TRANSLOCATION	SHQ1 (NM_018130) rearrangement: t(3;8)(p13;p11.21)(chr3:g.72861734::chr8:g.42218035)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	13	0	12
P-0050499-T01-IM6	SOMATIC	GOLPH3L	PBRM1	3	1	52582106	150659882	Exon 30 of PBRM1(-)	Intron of GOLPH3L(-):7Kb after exon 2	GRCh37	TRANSLOCATION	GOLPH3L (NM_018178) - PBRM1 (NM_018313) rearrangement: t(1;3)(q21.3;p21.1)(chr1:g.150659882::chr3:g.52582106)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GOLPH3L:PBRM1}	0	NA	0	6	10	7
P-0050503-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9860127	9862879	Intron of GRIN2A(-):1Kb before exon 13	Exon 12 of GRIN2A(-)	GRCh37	DELETION	GRIN2A (NM_001134407) rearrangement: c.2424_c.2596-1322del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2752	NA	0	65	10	64
P-0050503-T01-IM6	SOMATIC	AXL	AXL	19	19	35362724	41763468	IGR: 20Kb before LINC00904(-)	Exon 19 of AXL(+)	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.2267:AXL_chr19:g.35362724del	PRECISE		MANUAL_OK	3to5	-	6400744	NA	0	86	10	92
P-0050515-T01-IM6	SOMATIC	BAP1	BAP1	12	3	120555325	52439888	Promoter of RAB35(-):22Kb from tx start	Exon 10 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;12)(p21.1;q24.23)(chr3:g.52439888::chr12:g.120555325)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	76	10	76
P-0050528-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15976835	37269714	Exon 28 of NCOR1(-)	Intron of PLXDC1(-):4Kb before exon 3	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.3719:NCOR1_chr17:g.37269714inv	PRECISE		MANUAL_OK	3to3	-	21292879	NA	0	50	10	49
P-0050529-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68767896	68772052	IGR: 3Kb before CDH1(+)	Intron of CDH1(+):147bp before exon 2	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.49-148:CDH1_chr16:g.68767896del	PRECISE		MANUAL_OK	3to5	-	4156	NA	0	35	10	37
P-0050534-T01-IM6	SOMATIC	DDX6	TCF3	19	11	1615424	118643584	Intron of TCF3(-):260bp after exon 16	Intron of DDX6(-):5Kb before exon 5	GRCh37	TRANSLOCATION	DDX6 (NM_004397) - TCF3 (NM_001136139) rearrangement: t(11;19)(q23.3;p13.3)(chr11:g.118643584::chr19:g.1615424)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {DDX6:TCF3}	0	NA	0	48	10	49
P-0050535-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	34899145	36221465	Intron of PDCD2L(+):920bp before exon 4	Exon 25 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5224:KMT2B_chr19:g.34899145inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1322320	NA	0	68	10	68
P-0050537-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63810867	63819328	Intron of ARID5B(+):108bp after exon 5	Intron of ARID5B(+):274bp after exon 7	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.846+108_c.1101+274del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	8461	NA	0	10	10	10
P-0050537-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30103186	30107808	Intron of PRKD1(-):437bp after exon 8	Intron of PRKD1(-):36bp before exon 6	GRCh37	DUPLICATION	PRKD1 (NM_002742) rearrangement: c.908-36_c.1314+438dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	4622	NA	0	23	10	23
P-0050541-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	10032177	27280740	Exon 3 of GRIN2A(-)	5-UTR of FLJ21408(+):21Kb before coding start	GRCh37	INVERSION	GRIN2A (NM_001134407) rearrangement: c.646:GRIN2A_chr16:g.27280740inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GRIN2A:FLJ21408}	17248563	NA	0	18	10	20
P-0050541-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39872719	42848472	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):31bp after exon 8	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-55175:ERG_c.838+32:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2975753	NA	0	29	10	30
P-0050542-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268281	55271208	Intron of EGFR(+):175bp after exon 24	Intron of EGFR(+):890bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+175_c.3271+890del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2927	NA	0	7	0	7
P-0050548-T01-IM6	SOMATIC	ETV1	PTK2	8	7	141762207	13975429	Intron of PTK2(-):123bp after exon 17	Exon 7 of ETV1(-)	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) - PTK2 (NM_005607) rearrangement: t(7;8)(p21.2;q24.3)(chr7:g.13975429::chr8:g.141762207)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ETV1:PTK2}	0	NA	0	21	10	21
P-0050549-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37672266	37787750	Intron of CDK12(+):205bp after exon 9	Intron of PPP1R1B(+):1Kb after exon 4	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.2846+205:CDK12_chr17:g.37787750inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	115484	NA	0	8	10	8
P-0050566-T01-IM6	SOMATIC	PLIN5	PTPRS	19	19	4532378	5246067	Intron of PLIN5(-):544bp before exon 3	Intron of PTPRS(-):11bp before exon 10	GRCh37	DUPLICATION	PLIN5 (NM_001013706) - PTPRS (NM_002850) rearrangement: c.61-544:PLIN5_c.719-11:PTPRSdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PLIN5:PTPRS}	713689	NA	0	7	10	7
P-0050566-T01-IM6	SOMATIC	MET	MET	7	1	116411552	47763737	Exon 13 of MET(+)	Intron of STIL(-):2Kb after exon 6	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(1;7)(p33;q31.2)(chr1:g.47763737::chr7:g.116411552)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	54	10	55
P-0042302-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683613	32414705	Intron of EWSR1(+):490bp after exon 8	Intron of WT1(-):404bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414705::chr22:g.29683613)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	126	10	124
P-0045414-T03-IM6	SOMATIC	PBRM1	PBRM1	3	3	52620198	52627500	Intron of PBRM1(-):242bp after exon 21	Intron of PBRM1(-):4Kb before exon 19	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.2780-4229_c.3312+243dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	7302	NA	0	5	5	5
P-0049763-T02-IM6	SOMATIC	EZH1	EZH1	17	12	40865300	108659733	Exon 11 of EZH1(-)	IGR: 22Kb before CMKLR1(-)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(12;17)(q23.3;q21.2)(chr12:g.108659733::chr17:g.40865300)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	30	10	30
P-0049763-T02-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	22008271	22033412	Intron of CDKN2B(-):525bp after exon 1	5-UTR of CDKN2B-AS1(+):88Kb before coding start	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.156+526:CDKN2B_chr9:g.22033412inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {CDKN2B:CDKN2B-AS1}	25141	NA	0	9	0	15
P-0050442-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140488733	140494500	Intron of BRAF(-):1Kb before exon 9	Intron of BRAF(-):233bp before exon 8	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.981-233_c.1141-1349del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	5767	NA	0	10	10	10
P-0050463-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55173293	55222350	Intron of EGFR(+):37Kb before exon 2	Intron of EGFR(+):505bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-36686_c.889+505del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	49057	NA	0	72	0	342
P-0050463-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268953	55269607	Exon 25 of EGFR(+)	Intron of EGFR(+):132bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3019_c.3162+132del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	654	NA	0	106	10	199
P-0050536-T01-IM6	SOMATIC	RPS6KB2	WDR37	11	10	67198895	1153634	Exon 5 of RPS6KB2(+)	Intron of WDR37(+):2Kb after exon 11	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) - WDR37 (NM_014023) rearrangement: t(10;11)(p15.3;q13.2)(chr10:g.1153634::chr11:g.67198895)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RPS6KB2:WDR37}	0	NA	0	26	10	25
P-0050538-T01-IM6	SOMATIC	AKT2	AKT2	19	16	40748581	27242982	Exon 5 of AKT2(-)	Intron of NSMCE1(-):1Kb after exon 5	GRCh37	TRANSLOCATION	AKT2 (NM_001626) rearrangement: t(16;19)(p12.1;q13.2)(chr16:g.27242982::chr19:g.40748581)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	142	10	225
P-0050552-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853015	42872979	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2863:TMPRSS2_c.18+17272:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019964	NA	0	59	0	63
P-0050553-T01-IM6	SOMATIC	WIBG	ERBB3	12	12	56314207	56492211	Intron of WIBG(-):7Kb after exon 1	Intron of ERBB3(+):72bp before exon 22	GRCh37	INVERSION	WIBG (NM_032345) - ERBB3 (NM_001982) rearrangement: c.37+7302:WIBG_c.2617-73:ERBB3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {WIBG:ERBB3}	178004	NA	0	5	7	5
P-0050553-T01-IM6	SOMATIC	ERBB4	PLCL1	2	2	198897667	212495070	Intron of PLCL1(+):51Kb before exon 2	Intron of ERBB4(-):116bp after exon 17	GRCh37	INVERSION	ERBB4 (NM_005235) - PLCL1 (NM_006226) rearrangement: c.2079+117:ERBB4_c.241-50815:PLCL1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ERBB4:PLCL1}	13597403	NA	0	23	10	23
P-0050623-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968790	21982193	Intron of CDKN2A(-):549bp before exon 3	Intron of CDKN2A(-):11Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-549_c.194-10986del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	13403	NA	0	41	10	46
P-0050635-T01-IM6	SOMATIC	AKAP9	BRAF	7	7	91704680	140487501	Intron of AKAP9(+):1Kb before exon 29	Intron of BRAF(-):117bp before exon 9	GRCh37	INVERSION	AKAP9 (NM_005751) - BRAF (NM_004333) fusion: c.6613-1489:AKAP9_c.1141-117:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AKAP9:BRAF}	48782821	NA	0	29	10	29
P-0050640-T01-IM6	SOMATIC	PRKACA	PIK3R2	19	19	14205555	18272742	Intron of PRKACA(-):951bp before exon 9	Intron of PIK3R2(+):33bp before exon 7	GRCh37	INVERSION	PRKACA (NM_002730) - PIK3R2 (NM_005027) rearrangement: c.766-951:PRKACA_c.816-34:PIK3R2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PRKACA:PIK3R2}	4067187	NA	0	47	10	61
P-0044707-T04-IM6	SOMATIC	RTEL1	CDH4	20	20	60150175	62305671	Intron of CDH4(+):76Kb after exon 1	Intron of RTEL1(+):225bp after exon 10	GRCh37	DUPLICATION	RTEL1 (NM_032957) - CDH4 (NM_001794) rearrangement: c.991+225:RTEL1_c.170-168444:CDH4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RTEL1:CDH4}	2155496	NA	0	5	9	5
P-0050039-T03-IM6	SOMATIC	PDGFRB	PDGFRB	5	2	149505046	24149539	Exon 12 of PDGFRB(-)	Exon 1 of ATAD2B(-)	GRCh37	TRANSLOCATION	PDGFRB (NM_002609) rearrangement: t(2;5)(p23.3;q32)(chr2:g.24149539::chr5:g.149505046)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	6
P-0050527-T01-IM6	SOMATIC	IL7R	IL7R	19	5	35201559	35873544	IGR: 24Kb before ZNF181(+)	Intron of IL7R(+):37bp before exon 5	GRCh37	TRANSLOCATION	IL7R (NM_002185) rearrangement: t(5;19)(p13.2;q13.11)(chr5:g.35873544::chr19:g.35201559)	PRECISE		MANUAL_OK	5to5	-	0	NA	1	74	10	89
P-0050667-T01-IM6	SOMATIC	PHF7	BAP1	3	3	52437066	52450573	Intron of BAP1(-):87bp after exon 14	Intron of PHF7(+):2Kb after exon 4	GRCh37	INVERSION	PHF7 (NM_016483) - BAP1 (NM_004656) rearrangement: c.186+1970:PHF7_c.1890+88:BAP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PHF7:BAP1}	13507	NA	0	5	8	5
P-0050669-T01-IM6	SOMATIC	IQGAP3	NTRK1	1	1	156510839	156844408	Intron of IQGAP3(-):131bp before exon 23	Exon 10 of NTRK1(+)	GRCh37	INVERSION	IQGAP3 (NM_178229) - NTRK1 (NM_002529) fusion: c.2531-131:IQGAP3_c.1241:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IQGAP3:NTRK1}	333569	NA	0	27	0	36
P-0050669-T01-IM6	SOMATIC	EGFR	EGFR	11	7	83731417	55268325	Intron of DLG2(-):39Kb after exon 11	Intron of EGFR(+):219bp after exon 24	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;11)(p11.2;q14.1)(chr7:g.55268325::chr11:g.83731417)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	53	10	55
P-0050671-T01-IM6	SOMATIC	RPAP3	KMT2D	12	12	48078831	49420608	Intron of RPAP3(-):2Kb after exon 9	Exon 48 of KMT2D(-)	GRCh37	DUPLICATION	RPAP3 (NM_024604) - KMT2D (NM_003482) rearrangement: c.992+1732:RPAP3_c.15141:KMT2Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RPAP3:KMT2D}	1341777	NA	0	28	10	29
P-0050664-T01-IM6	SOMATIC	NF1	NF1	17	17	29652993	29655549	Exon 37 of NF1(+)	Intron of NF1(+):692bp after exon 38	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4991_c.5609+692del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2556	NA	0	28	10	29
P-0050746-T01-IM6	SOMATIC	TP53	TP53	17	17	7578138	7581092	Intron of TP53(-):38bp after exon 6	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+39:TP53_chr17:g.7581092del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2954	NA	0	8	10	8
P-0005759-T02-IM6	SOMATIC	EMILIN1	ALK	2	2	27307920	29450741	Intron of EMILIN1(+):44bp after exon 6	Intron of ALK(-):203bp before exon 17	GRCh37	INVERSION	EMILIN1 (NM_007046) - ALK (NM_004304) fusion: c.2575+44:EMILIN1_c.2816-203:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EMILIN1:ALK}	2142821	NA	0	4	10	4
P-0048700-T04-IM6	SOMATIC	MITF	MITF	3	3	69928381	69930351	Exon 2 of MITF(+)	Intron of MITF(+):2Kb after exon 2	GRCh37	DELETION	MITF (NM_198159) rearrangement: c.201_c.354+1817del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1970	NA	0	13	10	13
P-0048773-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3807472	3872301	Intron of CREBBP(-):95bp before exon 19	Intron of CREBBP(-):12Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.799-11521_c.3610-95inv	PRECISE		MANUAL_OK	3to3	-	64829	NA	0	14	10	14
P-0048773-T03-IM6	SOMATIC	CREBBP	CREBBP	16	16	3807472	3872301	Intron of CREBBP(-):95bp before exon 19	Intron of CREBBP(-):12Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.799-11521_c.3610-95inv	PRECISE		MANUAL_OK	3to3	-	64829	NA	0	9	10	9
P-0050637-T01-IM6	SOMATIC	BCAN	NTRK1	1	1	156620723	156842373	Intron of BCAN(+):524bp before exon 7	Intron of NTRK1(+):826bp after exon 7	GRCh37	DELETION	BCAN (NM_021948) - NTRK1 (NM_002529) fusion: c.1064-525:BCAN_c.850+826:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {BCAN:NTRK1}	221650	NA	0	27	10	30
P-0050730-T01-IM6	SOMATIC	RXRA	RXRA	9	9	137272401	137300770	Intron of RXRA(+):21Kb before exon 2	Intron of RXRA(+):15bp before exon 4	GRCh37	DELETION	RXRA (NM_002957) rearrangement: c.29-21077_c.431-16del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	28369	NA	0	7	7	7
P-0050732-T01-IM6	SOMATIC	NBN	NBN	8	4	90982749	37508795	Exon 7 of NBN(-)	5-UTR of C4orf19(+):82Kb before coding start	GRCh37	TRANSLOCATION	NBN (NM_002485) rearrangement: t(4;8)(p14;q21.3)(chr4:g.37508795::chr8:g.90982749)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {C4orf19:NBN}	0	NA	0	29	10	28
P-0050805-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30666800	30670561	Promoter of MDC1(-):783bp from tx start	Exon 13 of MDC1(-)	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.5959:MDC1_chr6:g.30666800del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3761	NA	0	14	10	14
P-0050805-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30670668	30671578	Intron of MDC1(-):14bp before exon 13	Exon 10 of MDC1(-)	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.5382_c.5866-14del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	910	NA	0	15	0	17
P-0050863-T01-IM6	SOMATIC	MET	MET	7	7	116410917	116414418	Intron of MET(+):634bp before exon 13	Intron of MET(+):516bp before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2731-635_c.3029-517del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3501	NA	0	7	10	7
P-0050867-T01-IM6	SOMATIC	TAP1	TAP1	20	6	44183357	32817984	Intron of WFDC8(-):982bp after exon 4	Intron of TAP1(-):112bp after exon 5	GRCh37	TRANSLOCATION	TAP1 (NM_000593) rearrangement: t(6;20)(p21.32;q13.12)(chr6:g.32817984::chr20:g.44183357)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	30	10	31
P-0013106-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36224357	51558544	Exon 28 of KMT2B(+)	Promoter of KLK13(-):918bp from tx start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.6907:KMT2B_chr19:g.51558544inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2B:KLK13}	15334187	NA	0	28	0	28
P-0013106-T02-IM6	SOMATIC	POLD1	POLD1	19	19	50910654	56784054	Exon 14 of POLD1(+)	IGR: 51Kb before ZSCAN5A(-)	GRCh37	DELETION	POLD1 (NM_002691) rearrangement: c.1757:POLD1_chr19:g.56784054del	PRECISE		MANUAL_OK	3to5	-	5873400	NA	0	41	10	41
P-0013106-T03-IM6	SOMATIC	KMT2B	KMT2B	19	19	36224356	51558542	Exon 28 of KMT2B(+)	Promoter of KLK13(-):920bp from tx start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.6906:KMT2B_chr19:g.51558542inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2B:KLK13}	15334186	NA	0	28	10	28
P-0013106-T03-IM6	SOMATIC	POLD1	POLD1	19	19	50910654	56784054	Exon 14 of POLD1(+)	IGR: 51Kb before ZSCAN5A(-)	GRCh37	DELETION	POLD1 (NM_002691) rearrangement: c.1757:POLD1_chr19:g.56784054del	PRECISE		MANUAL_OK	3to5	-	5873400	NA	0	23	10	23
P-0048760-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156835962	204556522	Intron of NTRK1(+):739bp before exon 4	IGR: 30Kb before LRRN2(-)	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.360-740:NTRK1_chr1:g.204556522del	PRECISE		MANUAL_OK	3to5	-	47720560	NA	0	95	10	117
P-0048881-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15281536	15290182	Exon 26 of NOTCH3(-)	Exon 21 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.3453_c.4837del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8646	NA	0	91	10	99
P-0050022-T02-IM6	SOMATIC	ERG	TMPRSS2	21	21	39856486	42871556	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+13801:ERG_c.56-1440:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3015070	NA	0	64	10	69
P-0050575-T02-IM6	SOMATIC	EZH1	EZH1	20	17	5910609	40864222	IGR: 8Kb before TRMT6(-)	Intron of EZH1(-):84bp after exon 12	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(17;20)(q21.2;p12.3)(chr17:g.40864222::chr20:g.5910609)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	37	10	37
P-0050644-T01-IM6	SOMATIC	TMPRSS2	ETV5	21	3	42874002	185800964	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ETV5(-):2Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) fusion: t(3;21)(q27.2;q22.3)(chr3:g.185800964::chr21:g.42874002)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV5}	0	NA	0	48	10	48
P-0050705-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39879367	42873192	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3076:TMPRSS2_c.40-61823:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993825	NA	0	22	10	25
P-0050745-T01-IM6	SOMATIC	PAK1	GDPD4	11	11	76991433	77036301	Intron of GDPD4(-):989bp before exon 3	Intron of PAK1(-):2Kb before exon 15	GRCh37	DELETION	PAK1 (NM_002576) - GDPD4 (NM_182833) rearrangement: c.1552-1896:PAK1_c.54-989:GDPD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PAK1:GDPD4}	44868	NA	0	5	5	5
P-0050745-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123170237	123185450	Intron of STAG2(+):1Kb before exon 6	Intron of STAG2(+):206bp after exon 13	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.289-1140_c.1196+206dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : out of frame	15213	NA	0	9	10	9
P-0050758-T01-IM6	SOMATIC	NOTCH1	NOTCH1	11	9	96145388	139397648	IGR: 22Kb before JRKL(+)	Exon 27 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;11)(q34.3;q21)(chr9:g.139397648::chr11:g.96145388)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	5	0	5
P-0050758-T01-IM6	SOMATIC	NF1	NF1	17	17	29686171	71803627	Intron of NF1(+):138bp after exon 56	3-UTR of LINC00469(-):21Kb after coding stop	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.8160+138:NF1_chr17:g.71803627inv	PRECISE		MANUAL_OK	3to3	-	42117456	NA	0	5	7	6
P-0050767-T01-IM6	SOMATIC	TPM3	NTRK1	1	1	154130851	156845252	Intron of TPM3(-):654bp before exon 7	Intron of NTRK1(+):59bp before exon 12	GRCh37	INVERSION	TPM3(NM_153469) - NTRK1 (NM_002529) Fusion(TPM3 exon 12 with NTRK1 exon12): c.665-654:TPM3_c.1355-60:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2714401	NA	0	53	10	64
P-0050788-T01-IM6	SOMATIC	EP300	EP300	22	22	41563086	41565359	Intron of EP300(+):416bp after exon 23	Intron of EP300(+):147bp before exon 26	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3874+416_c.4173-148del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2273	NA	0	15	10	17
P-0050792-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89720781	89761573	Exon 8 of PTEN(+)	IGR: 138Kb before PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.932:PTEN_chr10:g.89761573del	PRECISE		MANUAL_OK	3to5	-	40792	NA	0	12	10	56
P-0050792-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28885935	28968915	Intron of FLT1(-):66bp before exon 27	Intron of FLT1(-):2Kb after exon 12	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.1660+2182_c.3493-66del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 14 exons : out of frame	82980	NA	0	32	0	33
P-0050792-T01-IM6	SOMATIC	EZH1	EZH1	17	17	40852473	40855714	3-UTR of EZH1(-):2Kb after coding stop	Intron of EZH1(-):43bp after exon 19	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.2098+44:EZH1_chr17:g.40852473del	PRECISE		MANUAL_OK	3to5	-	3241	NA	0	20	10	20
P-0050793-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2985550	2989468	Exon 4 of CARD11(-)	Intron of CARD11(-):2Kb before exon 3	GRCh37	INVERSION	CARD11 (NM_032415) rearrangement: c.8-2047_c.261inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3918	NA	0	17	10	20
P-0003562-T03-IM6	SOMATIC	STAT3	STAT3	17	17	40477960	40586810	Intron of STAT3(-):173bp after exon 15	IGR: 24Kb before ATP6V0A1(+)	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.1365+174:STAT3_chr17:g.40586810inv	PRECISE		MANUAL_OK	5to5	-	108850	NA	0	7	7	8
P-0019659-T02-IM6	SOMATIC	CREBBP	SLX4	16	16	3647904	3864947	Exon 6 of SLX4(-)	Intron of CREBBP(-):4Kb before exon 3	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.799-4167:CREBBP_c.1260:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	217043	NA	0	66	10	66
P-0019659-T02-IM6	SOMATIC	XRCC6	EP300	22	22	41558725	42051894	Intron of EP300(+):1bp before exon 21	Intron of XRCC6(+):1Kb before exon 10	GRCh37	DUPLICATION	XRCC6 (NM_001469) - EP300 (NM_001429) rearrangement: c.1292-1013:XRCC6_c.3672-2:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {XRCC6:EP300}	493169	NA	0	40	10	40
P-0019659-T02-IM6	SOMATIC	FGFR1	FGFR1	8	8	38274415	38275852	Intron of FGFR1(-):408bp after exon 13	Exon 11 of FGFR1(-)	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1417_c.1756+409del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1437	NA	0	22	10	22
P-0043824-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11109519	11113929	Intron of SMARCA4(+):2Kb after exon 11	Intron of SMARCA4(+):86bp before exon 13	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1812+2299_c.1944-87del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4410	NA	0	6	6	6
P-0043824-T02-IM6	SOMATIC	ARID1B	ARID1B	6	6	157527239	157528078	Intron of ARID1B(+):61bp before exon 20	Exon 20 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5026-62_c.5803del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	839	NA	0	9	7	9
P-0047980-T02-IM6	SOMATIC	BAP1	BAP1	3	3	40229372	52438535	Intron of MYRIP(+):2Kb before exon 10	Exon 12 of BAP1(-)	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.1184:BAP1_chr3:g.40229372dup	PRECISE		MANUAL_OK	5to3	-	12209163	NA	0	14	10	14
P-0049587-T02-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35871862	35874027	Exon 5 of NFKBIA(-)	Promoter of NFKBIA(-):3Kb from tx start	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.644:NFKBIA_chr14:g.35874027del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2165	NA	0	28	10	28
P-0050888-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28895704	28904559	Exon 23 of FLT1(-)	Intron of FLT1(-):694bp before exon 19	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.2594-694_c.3070del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8855	NA	0	122	10	125
P-0050891-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41244575	43093246	Exon 10 of BRCA1(-)	IGR: 7Kb before DCAKD(-)	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.2973:BRCA1_chr17:g.43093246del	PRECISE		MANUAL_OK	3to5	-	1848671	NA	0	156	10	352
P-0050894-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89661710	89690821	Intron of PTEN(+):8Kb after exon 2	Exon 4 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.164+7844_c.228del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29111	NA	0	12	0	29
P-0050895-T01-IM6	SOMATIC	MDC1	MDC1	18	6	7361943	30672670	IGR: 131Kb before LRRC30(+)	Exon 10 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;18)(p21.33;p11.23)(chr6:g.30672670::chr18:g.7361943)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	48	10	55
P-0050901-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11996001	12037120	Intron of ETV6(+):4Kb after exon 3	Intron of ETV6(+):258bp before exon 6	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.328+3763_c.1010-259dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	41119	NA	0	18	10	20
P-0050927-T01-IM6	SOMATIC	MAPK1	MAPK1	22	8	22142957	12806402	Intron of MAPK1(-):25bp after exon 5	5-UTR of KIAA1456(+):57Kb before coding start	GRCh37	TRANSLOCATION	MAPK1 (NM_002745) rearrangement: t(8;22)(p22;q11.21)(chr8:g.12806402::chr22:g.22142957)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {KIAA1456:MAPK1}	0	NA	0	8	10	9
P-0050927-T01-IM6	SOMATIC	APC	APC	5	5	112157765	112191982	Intron of APC(+):77bp after exon 11	IGR: 5Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1408+77:APC_chr5:g.112191982del	PRECISE		MANUAL_OK	3to5	-	34217	NA	0	47	10	47
P-0050778-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32169186	64207429	Exon 22 of NOTCH4(-)	IGR: 74Kb before PTP4A1(+)	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.3847:NOTCH4_chr6:g.64207429del	IMPPRECISE		MANUAL_OK	3to5	-	32038243	NA	0	20	0	20
P-0050950-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35869306	35871252	Promoter of NFKBIA(-):1Kb from tx start	Exon 6 of NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.921:NFKBIA_chr14:g.35869306del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1946	NA	0	8	0	8
P-0050954-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	37871839	38061177	Intron of MIPOL1(+):20Kb before exon 13	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.812:FOXA1_chr14:g.37871839del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	189338	NA	0	40	10	44
P-0050957-T01-IM6	SOMATIC	PIK3R1	PIK3R1	19	5	36247472	67584458	Intron of HSPB6(-):239bp after exon 1	Intron of PIK3R1(+):4Kb before exon 8	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;19)(q13.1;q13.12)(chr5:g.67584458::chr19:g.36247472)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0050962-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123241844	123984634	Intron of FGFR2(-):1Kb after exon 17	Intron of TACC2(+):332bp after exon 11	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2301+1368:FGFR2_c.7608+332:TACC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:TACC2}	742790	NA	0	182	10	270
P-0050966-T01-IM6	SOMATIC	FLCN	FLCN	17	17	17121947	17124619	Intron of FLCN(-):385bp after exon 9	Intron of FLCN(-):231bp after exon 8	GRCh37	DELETION	FLCN (NM_144997) rearrangement: c.871+232_c.1062+386del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2672	NA	0	9	10	16
P-0050967-T01-IM6	SOMATIC	EP300	EP300	22	1	41574494	117441130	Exon 31 of EP300(+)	IGR: 11Kb before PTGFRN(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(1;22)(p13.1;q13.2)(chr1:g.117441130::chr22:g.41574494)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0050969-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1621182	5605003	Exon 11 of TCF3(-)	Intron of SAFB2(-):56bp before exon 10	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.964:TCF3_chr19:g.5605003inv	PRECISE		MANUAL_OK	3to3	-	3983821	NA	0	5	10	5
P-0050971-T01-IM6	SOMATIC	FGFR3	TNIP2	4	4	1808827	2757765	Intron of FGFR3(+):15bp before exon 18	Exon 1 of TNIP2(-)	GRCh37	INVERSION	FGFR3 (NM_000142) - TNIP2 (NM_024309) fusion: c.2275-16:FGFR3_c.252:TNIP2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FGFR3:TNIP2}	948938	NA	0	81	10	79
P-0048929-T02-IM6	SOMATIC	CIC	CITED1	X	19	71521810	42799289	Exon 3 of CITED1(-)	Exon 20 of CIC(+)	GRCh37	TRANSLOCATION	CIC (NM_015125) - CITED1 (NM_001144885) rearrangement: t(19;X)(q13.2;q13.1)(chr19:g.42799289::chrX:g.71521810)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:CITED1}	0	NA	0	62	0	62
P-0027054-T05-IM6	SOMATIC	FGFR3	TACC3	4	4	1740527	1808898	Intron of TACC3(+):901bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2330:FGFR3_c.1942-902:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68371	NA	0	105	10	114
P-0028777-T04-IM6	SOMATIC	ARID2	ARID2	12	12	46231811	46245063	Intron of ARID2(+):321bp after exon 10	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.1330+321_c.3157del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13252	NA	0	18	10	18
P-0049598-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36221553	36223709	Intron of KMT2B(+):36bp after exon 25	Exon 28 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5276+36_c.6259inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2156	NA	0	5	10	5
P-0051005-T01-IM6	SOMATIC	GRIN2A	ARID1B	16	6	9857543	157522578	Exon 13 of GRIN2A(-)	Exon 18 of ARID1B(+)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) - ARID1B (NM_020732) rearrangement: t(6;16)(q25.3;p13.2)(chr6:g.157522578::chr16:g.9857543)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GRIN2A:ARID1B}	0	NA	0	14	10	16
P-0051016-T01-IM6	SOMATIC	ATR	ATR	3	3	142185279	161170461	Exon 40 of ATR(-)	IGR: 26Kb before LOC101243545(+)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.6784:ATR_chr3:g.161170461inv	PRECISE		MANUAL_OK	5to5	-	18985182	NA	0	8	10	8
P-0051030-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15379724	16435612	Exon 3 of BRD4(-)	Promoter of KLF2(+):38bp from tx start	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.415:BRD4_chr19:g.16435612del	PRECISE		MANUAL_OK	3to5	-	1055888	NA	0	2	10	2
P-0051030-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1917115	1932657	Intron of WHSC1(+):1Kb before exon 4	Intron of WHSC1(+):160bp after exon 6	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.761-1483_c.1555+160dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	15542	NA	0	4	9	5
P-0051033-T01-IM6	SOMATIC	B2M	B2M	15	15	44978049	45007565	IGR: 20Kb before PATL2(-)	Intron of B2M(+):55bp before exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-56:B2M_chr15:g.44978049del	PRECISE		MANUAL_OK	3to5	-	29516	NA	0	5	10	18
P-0051048-T01-IM6	SOMATIC	AKT2	AKT2	19	19	40745837	40746676	Intron of AKT2(-):114bp after exon 7	Intron of AKT2(-):659bp before exon 7	GRCh37	DELETION	AKT2 (NM_001626) rearrangement: c.574-659_c.639+115del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	839	NA	0	19	10	21
P-0003018-T01-IM3	SOMATIC	FOXO4	MED12	X	X	70314996	70343467	Promoter of FOXO4(+): 1Kb from tx start	Exon 12 of MED12(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (FOXO4-MED12)	28471	NA	0	55	69	72
P-0003576-T01-IM5	SOMATIC	None	None	17	17	17122405	17134202	Exon 9 of FLCN(-)	5-UTR of FLCN(-): 3Kb before coding start	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	11797	NA	0	7	16	6
P-0012773-T02-IM6	SOMATIC	TP53	TP53	17	17	7552584	7578476	Promoter of ATP1B2(+):2Kb from tx start	Exon 5 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.454:TP53_chr17:g.7552584del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25892	NA	0	33	10	34
P-0048097-T02-IM6	SOMATIC	NUP98	FH	11	1	3766697	241661252	Intron of NUP98(-):818bp before exon 12	Exon 10 of FH(-)	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;11)(q43;p15.4)(chr1:g.241661252::chr11:g.3766697)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	59	0	60
P-0050471-T01-IM6	SOMATIC	NF1	NF1	17	17	29556938	29558612	Exon 22 of NF1(+)	Intron of NF1(+):478bp before exon 25	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2936_c.3198-479del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1674	NA	NA	NA	NA	NA
P-0050471-T01-IM6	SOMATIC	PLCG2	PLCG2	21	16	26566180	81927563	IGR: 192Kb before LINC00158(-)	Intron of PLCG2(+):164bp after exon 12	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) rearrangement: t(16;21)(q23.3;q21.2)(chr16:g.81927563::chr21:g.26566180)	PRECISE		MANUAL_OK	5to3	-	0	NA	NA	NA	NA	NA
P-0050835-T01-IM6	SOMATIC	AURKB	AURKB	17	17	8108615	42264370	Exon 8 of AURKB(-)	5-UTR of TMUB2(+):2Kb before coding start	GRCh37	DELETION	AURKB (NM_004217) rearrangement: c.780:AURKB_chr17:g.42264370del	PRECISE		MANUAL_OK	3to5	-	34155755	NA	0	81	10	83
P-0050849-T01-IM6	SOMATIC	ERRFI1	ERRFI1	12	1	79427838	8075675	5-UTR of SYT1(+):183Kb before coding start	Exon 2 of ERRFI1(-)	GRCh37	TRANSLOCATION	ERRFI1 (NM_018948) rearrangement: t(1;12)(p36.23;q21.2)(chr1:g.8075675::chr12:g.79427838)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SYT1:ERRFI1}	0	NA	0	30	10	30
P-0050854-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69009515	86018687	Intron of PREX2(+):79bp after exon 22	Promoter of LRRCC1(+):635bp from tx start	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.2553+79:PREX2_chr8:g.86018687inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	17009172	NA	0	25	10	25
P-0051003-T01-IM6	SOMATIC	NEFH	EWSR1	22	22	29692037	29881674	Intron of EWSR1(+):191bp before exon 13	Intron of NEFH(+):37bp before exon 3	GRCh37	DUPLICATION	NEFH (NM_021076) - EWSR1 (NM_013986) rearrangement: c.1084-38:NEFH_c.1180-192:EWSR1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NEFH:EWSR1}	189637	NA	0	6	6	6
P-0051006-T01-IM6	SOMATIC	RTEL1	TSHZ2	20	20	51627240	62325665	Intron of TSHZ2(+):37Kb after exon 1	Intron of RTEL1(+):59bp before exon 31	GRCh37	DUPLICATION	RTEL1 (NM_032957) - TSHZ2 (NM_173485) rearrangement: c.3065-60:RTEL1_c.40+37368:TSHZ2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RTEL1:TSHZ2}	10698425	NA	0	7	0	7
P-0049071-T01-IM6	SOMATIC	NRG3	FGFR2	10	10	83744891	123244882	Intron of NRG3(+):107Kb after exon 1	Intron of FGFR2(-):26bp after exon 16	GRCh37	INVERSION	NRG3 (NM_001010848) - FGFR2 (NM_000141) rearrangement: c.823+108972:NRG3_c.2195+27:FGFR2inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NRG3:FGFR2}	39499991	NA	0	11	0	11
P-0049071-T01-IM6	SOMATIC	KLF4	KLF4	9	9	110231435	110250044	Promoter of LINC01509(-):49Kb from tx start	Exon 3 of KLF4(-)	GRCh37	DELETION	KLF4 (NM_004235) rearrangement: c.631:KLF4_chr9:g.110231435del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KLF4:LINC01509}	18609	NA	0	5	10	6
P-0050853-T01-IM6	SOMATIC	BCL2	VPS4B	18	18	60985449	61071472	Exon 2 of BCL2(-)	Intron of VPS4B(-):413bp before exon 5	GRCh37	DUPLICATION	BCL2 (NM_000633) - VPS4B (NM_004869) rearrangement: c.451:BCL2_c.365-413:VPS4Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BCL2:VPS4B}	86023	NA	0	11	10	11
P-0051300-T01-IM6	SOMATIC	BCL2L14	ETV6	12	12	12031156	12234295	Intron of ETV6(+):6Kb before exon 6	Intron of BCL2L14(+):2Kb after exon 2	GRCh37	DUPLICATION	BCL2L14 (NM_138723) - ETV6 (NM_001987) rearrangement: c.433+1623:BCL2L14_c.1010-6223:ETV6dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BCL2L14:ETV6}	203139	NA	0	11	10	11
P-0051435-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27101241	94131651	Exon 18 of ARID1A(+)	Intron of BCAR3(-):9Kb after exon 2	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.4523:ARID1A_chr1:g.94131651del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	67030410	NA	0	5	9	5
P-0023000-T03-IM6	SOMATIC	ALK	ALK	2	2	19979335	29448128	IGR: 89Kb before LINC00954(+)	Intron of ALK(-):198bp after exon 19	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.3172+199:ALK_chr2:g.19979335dup	PRECISE		MANUAL_OK	5to3	-	9468793	NA	0	27	10	29
P-0051410-T02-IM6	SOMATIC	GSK3B	GSK3B	3	3	119582221	119584840	Intron of GSK3B(-):44bp after exon 10	Intron of GSK3B(-):596bp after exon 9	GRCh37	INVERSION	GSK3B (NM_002093) rearrangement: c.948+597_c.1135+45inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2619	NA	0	4	8	4
P-0017973-T05-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120469012	120471549	Intron of NOTCH2(-):109bp after exon 24	Intron of NOTCH2(-):49bp after exon 23	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.3892+50_c.4005+110del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2537	NA	0	6	0	6
P-0018942-T03-IM6	SOMATIC	DNMT1	DNMT1	19	19	10246928	10281905	Exon 37 of DNMT1(-)	Intron of DNMT1(-):2Kb after exon 8	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.720+1861_c.4477inv	PRECISE		MANUAL_OK	3to3	-	34977	NA	0	24	10	24
P-0023801-T04-IM6	SOMATIC	NOTCH2	NOTCH2	6	1	112594573	120465160	5-UTR of LOC101927640(+):33Kb before coding start	Intron of NOTCH2(-):91bp before exon 28	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q21)(chr1:g.120465160::chr6:g.112594573)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	30	10	30
P-0027087-T06-IM6	SOMATIC	TSC2	TSC2	16	16	2072809	2134502	Promoter of NPW(+):3Kb from tx start	Exon 34 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.4279:TSC2_chr16:g.2072809del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NPW:TSC2}	61693	NA	0	14	10	14
P-0027532-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46712602	46715886	Promoter of RAD54L(+):764bp from tx start	Intron of RAD54L(+):95bp after exon 4	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.210+95:RAD54L_chr1:g.46712602inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3284	NA	0	15	10	15
P-0036025-T02-IM6	SOMATIC	CBL	KMT2A	11	11	118350227	119148526	Intron of KMT2A(+):661bp before exon 6	Exon 7 of CBL(+)	GRCh37	DUPLICATION	CBL (NM_005188) - KMT2A (NM_001197104) rearrangement: c.1067:CBL_c.3570-662:KMT2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CBL:KMT2A}	798299	NA	0	48	10	52
P-0037695-T02-IM6	SOMATIC	PBRM1	PBRM1	3	3	52610787	52624128	Intron of PBRM1(-):73bp before exon 23	Intron of PBRM1(-):857bp before exon 19	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.2780-857_c.3459-73del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	13341	NA	0	31	10	31
P-0038570-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29683885	128664954	Intron of EWSR1(+):709bp before exon 9	Intron of FLI1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128664954::chr22:g.29683885)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	61	10	62
P-0042681-T03-IM6	SOMATIC	NBN	NBN	8	8	70060416	90996642	IGR: 236Kb before LOC100505718(-)	Intron of NBN(-):110bp after exon 1	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.37+111:NBN_chr8:g.70060416del	IMPPRECISE		MANUAL_OK	3to5	-	20936226	NA	0	19	0	22
P-0043649-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684294	32417492	Intron of EWSR1(+):300bp before exon 9	Intron of WT1(-):310bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417492::chr22:g.29684294)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	7	10	7
P-0045180-T01-IM6	SOMATIC	NEGR1	MAN1A2	1	1	72748116	117986438	Exon 1 of NEGR1(-)	Intron of MAN1A2(+):1Kb after exon 6	GRCh37	INVERSION	NEGR1 (NM_173808) - MAN1A2 (NM_006699) rearrangement: c.62:NEGR1_c.950+1491:MAN1A2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NEGR1:MAN1A2}	45238322	NA	0	10	10	12
P-0045256-T04-IM6	SOMATIC	ARID2	ARID2	12	12	46298230	46304714	Intron of ARID2(+):486bp before exon 21	Promoter of ARID2(+):181Kb from tx start	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.5364-487:ARID2_chr12:g.46304714del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	6484	NA	0	7	0	7
P-0047342-T02-IM6	SOMATIC	EWSR1	EWSR1	22	3	29686655	126074404	Intron of EWSR1(+):898bp before exon 10	5-UTR of KLF15(-):12Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(3;22)(q21.3;q12.2)(chr3:g.126074404::chr22:g.29686655)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:KLF15}	0	NA	0	156	10	156
P-0048104-T01-IM6	SOMATIC	MED13	CDK12	17	17	37627894	60067043	Exon 2 of CDK12(+)	Intron of MED13(-):3Kb before exon 12	GRCh37	INVERSION	MED13 (NM_005121) - CDK12 (NM_016507) rearrangement: c.2264-2554:MED13_c.1809:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MED13:CDK12}	22439149	NA	0	96	10	121
P-0048104-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59761242	60088581	Exon 20 of BRIP1(-)	Exon 9 of MED13(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.3165:BRIP1_chr17:g.60088581inv	PRECISE		MANUAL_OK	3to3	-	327339	NA	0	118	10	118
P-0048104-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36251672	36259206	Intron of RUNX1(-):1Kb after exon 5	Exon 4 of RUNX1(-)	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.285_c.508+1182dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7534	NA	0	4	9	4
P-0049135-T03-IM6	SOMATIC	FGFR2	BICC1	10	10	60425544	123239791	Intron of BICC1(+):36Kb before exon 3	Intron of FGFR2(-):256bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2302-256:FGFR2_c.238-36290:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62814247	NA	0	107	10	126
P-0049265-T01-IM6	SOMATIC	SNAPC4	NOTCH1	9	9	139289887	139409177	Intron of SNAPC4(-):12bp before exon 4	Intron of NOTCH1(-):23bp before exon 13	GRCh37	DUPLICATION	SNAPC4 (NM_003086) - NOTCH1 (NM_017617) rearrangement: c.346-12:SNAPC4_c.2015-23:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SNAPC4:NOTCH1}	119290	NA	0	82	10	90
P-0049699-T02-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48894473	79965018	Intron of TFE3(-):1Kb after exon 5	Intron of ASPSCR1(+):2Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) rearrangement: t(17;X)(q25.3;p11.23)(chr17:g.79965018::chrX:g.48894473)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	38	10	38
P-0049741-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1740950	1808830	Intron of TACC3(+):478bp before exon 11	Intron of FGFR3(+):12bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-13:FGFR3_c.1942-479:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67880	NA	0	15	10	15
P-0050298-T02-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29688525	46333400	Exon 12 of EWSR1(+)	Intron of CREB3L1(+):475bp before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333400::chr22:g.29688525)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	NA	0	50	10	51
P-0050471-T02-IM6	SOMATIC	NF1	NF1	17	17	29556938	29558612	Exon 22 of NF1(+)	Intron of NF1(+):478bp before exon 25	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2936_c.3198-479del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1674	NA	0	47	10	78
P-0050471-T02-IM6	SOMATIC	PLCG2	PLCG2	21	16	26566180	81927563	IGR: 192Kb before LINC00158(-)	Intron of PLCG2(+):164bp after exon 12	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) rearrangement: t(16;21)(q23.3;q21.2)(chr16:g.81927563::chr21:g.26566180)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	10
P-0050519-T01-IM6	SOMATIC	BIRC3	BIRC3	11	11	62605302	102207370	Intron of WDR74(-):1Kb after exon 4	Intron of BIRC3(+):120bp before exon 9	GRCh37	DELETION	BIRC3 (NM_182962) rearrangement: c.1580-121:BIRC3_chr11:g.62605302del	IMPPRECISE		MANUAL_OK	3to5	-	39602068	NA	0	55	0	55
P-0050519-T01-IM6	SOMATIC	EIF4E	EIF4E	7	4	84697862	99823088	Intron of SEMA3D(-):262bp before exon 5	Exon 2 of EIF4E(-)	GRCh37	TRANSLOCATION	EIF4E (NM_001130678) rearrangement: t(4;7)(q23;q21.11)(chr4:g.99823088::chr7:g.84697862)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	81	10	81
P-0050570-T02-IM6	SOMATIC	STX5	MEN1	11	11	62591165	64572230	Intron of STX5(-):472bp after exon 10	Exon 10 of MEN1(-)	GRCh37	DUPLICATION	STX5 (NM_003164) - MEN1 (NM_000244) rearrangement: c.908+473:STX5_c.1424:MEN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STX5:MEN1}	1981065	NA	0	69	10	85
P-0050570-T02-IM6	SOMATIC	RELA	RELA	11	11	63532200	65430149	Intron of C11orf95(-):130bp before exon 4	Intron of RELA(-):147bp after exon 1	GRCh37	DUPLICATION	RELA (NM_021975) rearrangement: c.7+148:RELA_chr11:g.63532200dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {C11orf95:RELA}	1897949	NA	0	37	10	40
P-0050585-T02-IM6	SOMATIC	APC	APC	5	5	112175189	112182677	Exon 16 of APC(+)	Promoter of APC(+):109Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3898:APC_chr5:g.112182677del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7488	NA	0	6	10	6
P-0050677-T02-IM6	SOMATIC	SFXN2	SUFU	10	10	104375081	104492209	Exon 9 of SUFU(+)	Intron of SFXN2(+):234bp after exon 8	GRCh37	DUPLICATION	SFXN2 (NM_178858) - SUFU (NM_016169) rearrangement: c.721+234:SFXN2_c.1079:SUFUdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SFXN2:SUFU}	117128	NA	0	5	10	5
P-0050687-T02-IM6	SOMATIC	TFE3	TFE3	X	X	47042766	48895871	Intron of RBM10(+):1Kb after exon 17	Exon 4 of TFE3(-)	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.631:TFE3_chrX:g.47042766inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TFE3:RBM10}	1853105	NA	0	15	10	28
P-0050775-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27100174	27106148	Exon 16 of ARID1A(+)	Exon 20 of ARID1A(+)	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.3970_c.5759dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5974	NA	0	41	10	42
P-0050775-T02-IM6	SOMATIC	PTCH1	PTCH1	9	9	98265965	98279266	Intron of PTCH1(-):3Kb after exon 2	Promoter of PTCH1(-):74Kb from tx start	GRCh37	DUPLICATION	PTCH1 (NM_000264) rearrangement: c.394+2724:PTCH1_chr9:g.98279266dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	13301	NA	0	5	7	5
P-0050959-T01-IM6	SOMATIC	QARS	SETD2	3	3	47161927	49133612	Exon 3 of SETD2(-)	Intron of QARS(-):100bp before exon 24	GRCh37	DELETION	QARS (NM_005051) - SETD2 (NM_014159) rearrangement: c.2278-100:QARS_c.4199:SETD2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {QARS:SETD2}	1971685	NA	0	12	10	12
P-0050970-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39946387	42871401	Intron of ERG(-):1Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1285:TMPRSS2_c.39+1199:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2925014	NA	0	140	10	147
P-0051076-T01-IM6	SOMATIC	RNF43	SUPT4H1	17	17	56424614	56434844	Intron of SUPT4H1(-):12bp before exon 4	Exon 9 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) - SUPT4H1 (NM_003168) rearrangement: c.2293:RNF43_c.233-12:SUPT4H1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RNF43:SUPT4H1}	10230	NA	0	29	10	29
P-0051076-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40038293	42874580	IGR: 73Kb before LINC00114(-)	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4464:TMPRSS2_chr21:g.40038293del	PRECISE		MANUAL_OK	3to5	-	2836287	NA	0	110	10	118
P-0051077-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41226384	41379886	Exon 14 of BRCA1(-)	3-UTR of LINC00854(-):1Kb after coding stop	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.4639:BRCA1_chr17:g.41379886inv	PRECISE		MANUAL_OK	3to3	-	153502	NA	0	4	10	4
P-0051077-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11097335	11212882	Intron of SMARCA4(+):66bp after exon 4	Intron of LDLR(+):457bp before exon 3	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.760+66:SMARCA4_c.191-458:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SMARCA4:LDLR}	115547	NA	0	3	4	3
P-0051079-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9934612	9942678	Exon 7 of GRIN2A(-)	Intron of GRIN2A(-):934bp after exon 5	GRCh37	DUPLICATION	GRIN2A (NM_001134407) rearrangement: c.1328+935_c.1543dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8066	NA	0	2	10	5
P-0051084-T01-IM6	SOMATIC	DGKH	BRCA2	13	13	32968766	42676976	Intron of BRCA2(+):59bp before exon 25	Intron of DGKH(+):25Kb before exon 3	GRCh37	DUPLICATION	DGKH (NM_178009) - BRCA2 (NM_000059) rearrangement: c.193-24623:DGKH_c.9257-60:BRCA2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DGKH:BRCA2}	9708210	NA	0	5	0	5
P-0051085-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56489669	56657638	Intron of ERBB3(+):79bp after exon 17	IGR: 3Kb before COQ10A(+)	GRCh37	INVERSION	ERBB3 (NM_001982) rearrangement: c.2055+79:ERBB3_chr12:g.56657638inv	PRECISE		MANUAL_OK	3to3	-	167969	NA	0	23	10	29
P-0051096-T01-IM6	SOMATIC	DNMT1	ZNF429	19	19	10273273	21715625	Intron of DNMT1(-):69bp after exon 12	Intron of ZNF429(+):2Kb after exon 3	GRCh37	INVERSION	DNMT1 (NM_001379) - ZNF429 (NM_001001415) rearrangement: c.960+70:DNMT1_c.226+2139:ZNF429inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {DNMT1:ZNF429}	11442352	NA	0	8	0	8
P-0051097-T01-IM6	SOMATIC	PHLDB1	KMT2A	11	11	118352308	118518298	Intron of KMT2A(+):121bp before exon 7	Intron of PHLDB1(+):347bp before exon 18	GRCh37	DUPLICATION	PHLDB1 (NM_001144758) - KMT2A (NM_001197104) rearrangement: c.3508-348:PHLDB1_c.3635-122:KMT2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PHLDB1:KMT2A}	165990	NA	0	18	10	18
P-0051097-T01-IM6	SOMATIC	EWSR1	ZNRF3	22	22	29414640	29692623	Intron of ZNRF3(+):24Kb before exon 3	Intron of EWSR1(+):265bp after exon 13	GRCh37	DUPLICATION	EWSR1 (NM_013986) - ZNRF3 (NM_001206998) rearrangement: c.1309+265:EWSR1_c.427-23843:ZNRF3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EWSR1:ZNRF3}	277983	NA	0	49	0	51
P-0051098-T01-IM6	SOMATIC	ATM	ATM	11	11	108197920	108200128	Intron of ATM(+):451bp before exon 48	Intron of ATM(+):163bp after exon 49	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.6976-452_c.7307+163inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2208	NA	0	7	9	7
P-0051113-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16255573	16256698	Exon 11 of SPEN(+)	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.2838_c.3963del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1125	NA	0	7	10	8
P-0051119-T01-IM6	SOMATIC	SHOC2	SHOC2	10	10	112744677	112745515	Intron of SHOC2(+):708bp before exon 3	Exon 3 of SHOC2(+)	GRCh37	DELETION	SHOC2 (NM_007373) rearrangement: c.704-709_c.833del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	838	NA	0	2	5	2
P-0051125-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193172955	193314135	Exon 11 of CDC73(+)	5-UTR of LINC01031(+):21Kb before coding start	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.1003:CDC73_chr1:g.193314135del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDC73:LINC01031}	141180	NA	0	7	8	7
P-0051128-T01-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	106459429	106508986	IGR: 46Kb before PIK3CG(+)	Exon 2 of PIK3CG(+)	GRCh37	DELETION	PIK3CG (NM_002649) rearrangement: c.980:PIK3CG_chr7:g.106459429del	PRECISE		MANUAL_OK	3to5	-	49557	NA	0	6	8	6
P-0051131-T01-IM6	SOMATIC	B2M	B2M	15	15	33176277	45007675	Intron of FMN1(-):4Kb after exon 12	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.122:B2M_chr15:g.33176277del	PRECISE		MANUAL_OK	3to5	-	11831398	NA	0	102	10	106
P-0051141-T02-IM6	SOMATIC	INSR	INSR	19	19	7120686	7511775	Exon 20 of INSR(-)	Intron of ARHGEF18(+):153bp before exon 6	GRCh37	DELETION	INSR (NM_000208) rearrangement: c.3604:INSR_chr19:g.7511775del	PRECISE		MANUAL_OK	3to5	-	391089	NA	0	114	10	121
P-0051159-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117658909	132216009	Intron of ROS1(-):406bp before exon 31	3-UTR of ENPP1(+):87Kb after coding stop	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5080-406:ROS1_chr6:g.132216009inv	PRECISE		MANUAL_OK	5to5	-	14557100	NA	0	20	10	22
P-0051162-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40466303	40468746	Promoter of STAT5A(+):27Kb from tx start	Intron of STAT3(-):60bp after exon 23	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.2257+61:STAT3_chr17:g.40466303del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2443	NA	0	9	10	10
P-0051162-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39836080	42868272	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1767:TMPRSS2_c.19-18536:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3032192	NA	0	29	10	29
P-0051164-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42858712	42875146	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4731_c.556+1609del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	16434	NA	0	6	10	6
P-0051173-T02-IM6	SOMATIC	NCOR1	NCOR1	17	5	16021165	143481161	Intron of NCOR1(-):36bp after exon 18	IGR: 57Kb before YIPF5(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(5;17)(q31.3;p11.2)(chr5:g.143481161::chr17:g.16021165)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	68	10	71
P-0051173-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1739490	1808716	Intron of TACC3(+):61bp after exon 10	Intron of FGFR3(+):55bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+55:FGFR3_c.1941+61:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69226	NA	0	154	0	171
P-0051214-T01-IM6	SOMATIC	TMPRSS2	BRAF	21	7	42867846	140502592	Intron of TMPRSS2(-):1Kb before exon 3	Intron of BRAF(-):1Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - BRAF (NM_004333) fusion: t(7;21)(q34;q22.3)(chr7:g.140502592::chr21:g.42867846)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:BRAF}	0	NA	0	6	10	6
P-0051214-T01-IM6	SOMATIC	PBRM1	IQCF1	3	3	51936529	52584810	Intron of IQCF1(-):471bp after exon 2	Exon 28 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) - IQCF1 (NM_152397) rearrangement: c.4312:PBRM1_c.108+472:IQCF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PBRM1:IQCF1}	648281	NA	0	2	6	1
P-0051220-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871938	42867633	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1128:TMPRSS2_c.40-54394:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2995695	NA	0	53	10	55
P-0051231-T01-IM6	SOMATIC	EML4	ALK	2	2	29446774	42496001	Intron of ALK(-):380bp before exon 20	Intron of EML4(+):4Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4130:EML4_c.3173-380:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13049227	NA	0	39	10	39
P-0051233-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11855690	12020984	Intron of ETV6(+):50Kb before exon 2	Intron of ETV6(+):1Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.34-49694_c.464-1374del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	165294	NA	0	75	10	78
P-0051233-T01-IM6	SOMATIC	SPOP	SPOP	20	17	5986739	47699333	5-UTR of CRLS1(+):153bp before coding start	Exon 3 of SPOP(-)	GRCh37	TRANSLOCATION	SPOP (NM_001007228) rearrangement: t(17;20)(q21.33;p12.3)(chr17:g.47699333::chr20:g.5986739)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SPOP:CRLS1}	0	NA	0	17	10	20
P-0051238-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140488458	140509276	Intron of BRAF(-):1Kb before exon 9	Intron of BRAF(-):481bp before exon 4	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.505-481_c.1141-1074del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	20818	NA	0	28	0	29
P-0051245-T01-IM6	SOMATIC	NOTCH1	FAM102A	9	9	130721636	139397313	Intron of FAM102A(-):5Kb before exon 2	Intron of NOTCH1(-):320bp after exon 27	GRCh37	DELETION	NOTCH1 (NM_017617) - FAM102A (NM_001035254) rearrangement: c.5167+321:NOTCH1_c.147-5432:FAM102Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NOTCH1:FAM102A}	8675677	NA	0	5	0	5
P-0051249-T01-IM6	SOMATIC	PDCD1	PDCD1	2	2	242794825	242800565	Exon 2 of PDCD1(-)	Intron of PDCD1(-):349bp after exon 1	GRCh37	DUPLICATION	PDCD1 (NM_005018) rearrangement: c.76+350_c.384dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5740	NA	0	45	10	46
P-0051249-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	14166875	29203283	Intron of SGCZ(-):15Kb after exon 3	Intron of DUSP4(-):4Kb after exon 1	GRCh37	INVERSION	DUSP4 (NM_001394) rearrangement: c.433+4080:DUSP4_chr8:g.14166875inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	15036408	NA	0	60	10	83
P-0051249-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123194314	123202474	Intron of STAG2(+):759bp before exon 16	Exon 24 of STAG2(+)	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.1417-760_c.2326dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8160	NA	0	3	5	3
P-0051254-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11300923	11972819	Intron of SHISA6(+):18Kb after exon 3	Intron of MAP2K4(+):12Kb before exon 3	GRCh37	INVERSION	MAP2K4 (NM_003010) rearrangement: c.219-11854:MAP2K4_chr17:g.11300923inv	PRECISE		MANUAL_OK	5to5	-	671896	NA	0	4	6	4
P-0051264-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212243125	212251619	3-UTR of ERBB4(-):5Kb after coding stop	Exon 27 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.3440:ERBB4_chr2:g.212243125del	PRECISE		MANUAL_OK	3to5	-	8494	NA	0	41	10	41
P-0051264-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55228031	55229192	Exon 12 of EGFR(+)	Exon 13 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1498_c.1499del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1161	NA	0	2	6	2
P-0051267-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737315	1808672	Intron of TACC3(+):142bp before exon 8	Intron of FGFR3(+):11bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+11:FGFR3_c.1645-143:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71357	NA	0	95	10	100
P-0051268-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49428348	49448292	Intron of KMT2D(-):16bp after exon 36	Intron of KMT2D(-):18bp after exon 3	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.400+19_c.10440+17dup	PRECISE		MANUAL_OK	5to3	Duplication of 33 exons : out of frame	19944	NA	0	35	10	37
P-0051269-T01-IM6	SOMATIC	FGFR2	FGFR2	10	1	123242097	32713006	Intron of FGFR2(-):1Kb after exon 17	5-UTR of FAM167B(+):16bp before coding start	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(1;10)(p35.1;q26.13)(chr1:g.32713006::chr10:g.123242097)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {FGFR2:FAM167B}	0	NA	0	36	10	38
P-0051272-T01-IM6	SOMATIC	ACO2	DNMT3B	22	20	41915916	31376690	Intron of ACO2(+):258bp before exon 9	Exon 7 of DNMT3B(+)	GRCh37	TRANSLOCATION	ACO2 (NM_001098) - DNMT3B (NM_006892) rearrangement: t(20;22)(q11.21;q13.2)(chr20:g.31376690::chr22:g.41915916)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ACO2:DNMT3B}	0	NA	0	10	10	10
P-0051298-T01-IM6	SOMATIC	MED12	MED12	X	X	70334556	70340792	IGR: 4Kb before MED12(+)	Intron of MED12(+):28bp before exon 5	GRCh37	DELETION	MED12 (NM_005120) rearrangement: c.554-29:MED12_chrX:g.70334556del	PRECISE		MANUAL_OK	3to5	-	6236	NA	0	42	10	43
P-0051311-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40086924	42871971	IGR: 24Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1855:TMPRSS2_chr21:g.40086924del	PRECISE		MANUAL_OK	3to5	-	2785047	NA	0	59	10	61
P-0051333-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684190	128667777	Intron of EWSR1(+):404bp before exon 9	Intron of FLI1(+):7Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128667777::chr22:g.29684190)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	87	10	87
P-0051348-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32914304	34265791	Exon 11 of BRCA2(+)	IGR: 126Kb before RFC3(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.5812:BRCA2_chr13:g.34265791inv	PRECISE		MANUAL_OK	3to3	-	1351487	NA	0	20	10	23
P-0051348-T01-IM6	SOMATIC	BCL2L11	BCL2L11	13	2	58553124	111921739	IGR: 187Kb before LOC101926897(+)	Exon 4 of BCL2L11(+)	GRCh37	TRANSLOCATION	BCL2L11 (NM_138621) rearrangement: t(2;13)(q13;q21.1)(chr2:g.111921739::chr13:g.58553124)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	6	0	5
P-0051353-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40485910	69894661	Exon 9 of STAT3(-)	IGR: 123Kb before LOC102723505(-)	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.955:STAT3_chr17:g.69894661inv	PRECISE		MANUAL_OK	3to3	-	29408751	NA	0	5	10	5
P-0051356-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120462043	154735978	Exon 31 of NOTCH2(-)	Intron of KCNN3(-):8Kb after exon 3	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.5673:NOTCH2_chr1:g.154735978inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	34273935	NA	0	72	10	80
P-0051356-T01-IM6	SOMATIC	NKAIN3	ARID2	12	8	46245466	63337990	Exon 15 of ARID2(+)	Intron of NKAIN3(+):154Kb before exon 2	GRCh37	TRANSLOCATION	NKAIN3 (NM_173688) - ARID2 (NM_152641) rearrangement: t(8;12)(q12.3;q12)(chr8:g.63337990::chr12:g.46245466)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NKAIN3:ARID2}	0	NA	0	102	10	102
P-0051358-T01-IM6	SOMATIC	SLC35F3	FH	1	1	234199333	241661231	Intron of SLC35F3(+):158Kb after exon 2	Exon 10 of FH(-)	GRCh37	INVERSION	SLC35F3 (NM_173508) - FH (NM_000143) rearrangement: c.283+157829:SLC35F3_c.1430:FHinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SLC35F3:FH}	7461898	NA	0	23	10	25
P-0051365-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29687795	51203069	Intron of EWSR1(+):207bp after exon 10	Intron of ATF1(+):169bp before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51203069::chr22:g.29687795)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:ATF1}	0	NA	0	132	10	139
P-0051367-T01-IM6	SOMATIC	MET	MET	7	7	116419021	116433493	Intron of MET(+):10bp after exon 17	Intron of MET(+):2Kb before exon 20	GRCh37	DELETION	MET (NM_000245) rearrangement: c.3522+10_c.3799-2216del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	14472	NA	0	6	7	6
P-0051378-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2098830	2111404	Intron of TSC2(+):76bp after exon 2	Intron of TSC2(+):467bp before exon 12	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.138+76_c.1120-468del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	12574	NA	0	9	0	10
P-0051408-T01-IM6	SOMATIC	KMT2A	KMT2A	11	8	118367036	11019933	Exon 20 of KMT2A(+)	Intron of XKR6(-):38Kb after exon 1	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(8;11)(p23.1;q23.3)(chr8:g.11019933::chr11:g.118367036)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	39	10	39
P-0051409-T01-IM6	SOMATIC	MAP3K14	MAP3K14	17	16	43351025	8922125	Intron of MAP3K14(-):51bp before exon 9	Intron of PMM2(+):15Kb after exon 7	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(16;17)(p13.2;q21.31)(chr16:g.8922125::chr17:g.43351025)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	75	10	76
P-0051436-T01-IM6	SOMATIC	E4F1	TRAF7	16	16	2222420	2274815	Intron of TRAF7(+):45bp before exon 9	Intron of E4F1(+):1Kb after exon 1	GRCh37	DUPLICATION	E4F1 (NM_004424) - TRAF7 (NM_032271) rearrangement: c.157+1044:E4F1_c.659+45:TRAF7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {E4F1:TRAF7}	52395	NA	0	45	10	45
P-0051455-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55148762	55222002	Intron of EGFR(+):61Kb before exon 2	Intron of EGFR(+):157bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-61217_c.889+157del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	73240	NA	0	157	0	678
P-0051455-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268640	55272867	Intron of EGFR(+):240bp before exon 25	Intron of EGFR(+):81bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-241_c.3272-82del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4227	NA	0	167	10	752
P-0051466-T01-IM6	SOMATIC	CRHR1	H3F3B	17	17	43891196	73774680	Intron of CRHR1(+):3Kb before exon 3	Exon 4 of H3F3B(-)	GRCh37	INVERSION	CRHR1 (NM_004382) - H3F3B (NM_005324) rearrangement: c.122-2633:CRHR1_c.407:H3F3Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CRHR1:H3F3B}	29883484	NA	0	81	10	113
P-0051467-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	145513916	149440295	Intron of LARS(-):1Kb after exon 22	Intron of CSF1R(-):129bp after exon 14	GRCh37	INVERSION	CSF1R (NM_005211) rearrangement: c.1969+130:CSF1R_chr5:g.145513916inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3926379	NA	0	11	10	12
P-0051479-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78811693	78908930	Intron of RPTOR(+):28bp before exon 10	Intron of RPTOR(+):5Kb before exon 25	GRCh37	DUPLICATION	RPTOR (NM_020761) rearrangement: c.1137-29_c.2920-5366dup	PRECISE		MANUAL_OK	5to3	Duplication of 15 exons : out of frame	97237	NA	0	110	10	113
P-0051483-T01-IM6	SOMATIC	UPF1	CRTC1	19	19	18854238	18972889	Intron of CRTC1(+):402bp after exon 2	Exon 18 of UPF1(+)	GRCh37	DUPLICATION	UPF1 (NM_002911) - CRTC1 (NM_001098482) rearrangement: c.2528:UPF1_c.243+402:CRTC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {UPF1:CRTC1}	118651	NA	0	30	10	31
P-0051484-T01-IM6	SOMATIC	MGA	TP53I13	17	15	27897670	42058336	Intron of TP53I13(+):938bp before exon 4	Exon 24 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) - TP53I13 (NM_138349) rearrangement: t(15;17)(q15.1;q11.2)(chr15:g.42058336::chr17:g.27897670)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MGA:TP53I13}	0	NA	0	93	10	97
P-0051484-T01-IM6	SOMATIC	TP53	TP53	17	17	7575392	7577514	Intron of TP53(-):1Kb before exon 10	Exon 7 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.767_c.994-1359del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2122	NA	0	162	10	175
P-0051484-T01-IM6	SOMATIC	MSH3	MSH3	5	5	58942996	80063714	Intron of PDE4D(-):341Kb after exon 3	Intron of MSH3(+):37bp before exon 14	GRCh37	DELETION	MSH3 (NM_002439) rearrangement: c.1897-38:MSH3_chr5:g.58942996del	PRECISE		MANUAL_OK	3to5	-	21120718	NA	0	73	10	75
P-0051507-T01-IM6	SOMATIC	POU2F2	ERF	19	19	42631438	42752754	Intron of POU2F2(-):5Kb before exon 2	Exon 4 of ERF(-)	GRCh37	DUPLICATION	POU2F2 (NM_001207025) - ERF (NM_006494) rearrangement: c.29-4710:POU2F2_c.1510:ERFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {POU2F2:ERF}	121316	NA	0	6	10	6
P-0051550-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862623	42871766	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1650:TMPRSS2_c.18+7664:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009143	NA	0	5	8	5
P-0051569-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684917	128643608	Intron of EWSR1(+):142bp after exon 9	Intron of FLI1(+):728bp after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128643608::chr22:g.29684917)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	7	10	7
P-0051571-T01-IM6	SOMATIC	RNF43	RNF43	17	14	56437400	70241101	Intron of RNF43(-):109bp after exon 8	Promoter of SLC10A1(-):1Kb from tx start	GRCh37	TRANSLOCATION	RNF43 (NM_017763) rearrangement: t(14;17)(q24.2;q22)(chr14:g.70241101::chr17:g.56437400)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {RNF43:SLC10A1}	0	NA	0	64	10	65
P-0051571-T01-IM6	SOMATIC	GTF3C3	SF3B1	2	2	197634138	198265219	Intron of GTF3C3(-):500bp after exon 16	Intron of SF3B1(-):61bp before exon 19	GRCh37	DUPLICATION	GTF3C3 (NM_012086) - SF3B1 (NM_012433) rearrangement: c.2385+501:GTF3C3_c.2719-61:SF3B1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {GTF3C3:SF3B1}	631081	NA	0	5	5	6
P-0051585-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39883668	42878040	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+1837:TMPRSS2_c.39+63918:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994372	NA	0	18	10	18
P-0051588-T01-IM6	SOMATIC	ETV6	ETV6	12	4	12008388	1865508	Intron of ETV6(+):2Kb after exon 4	IGR: 8Kb before WHSC1(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(4;12)(p16.3;p13.2)(chr4:g.1865508::chr12:g.12008388)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	10	10
P-0051593-T01-IM6	SOMATIC	TP53	TP53	17	17	7578265	7580180	Exon 6 of TP53(-)	5-UTR of TP53(-):7Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.584:TP53_chr17:g.7580180del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1915	NA	0	39	10	43
P-0051599-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	69352129	72833952	Intron of VPS4A(+):423bp before exon 4	Exon 8 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3941:ZFHX3_chr16:g.69352129del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3481823	NA	0	12	10	15
P-0051599-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39869883	42875395	Intron of ERG(-):403bp after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4482:TMPRSS2_c.18+404:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3005512	NA	0	4	8	4
P-0051602-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16257129	16261076	Exon 11 of SPEN(+)	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.4394_c.8341inv	PRECISE		MANUAL_OK	5to5	-	3947	NA	0	4	9	4
P-0051602-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740432	1808884	Intron of TACC3(+):996bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2316:FGFR3_c.1942-997:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68452	NA	0	5	10	5
P-0051640-T01-IM6	SOMATIC	NR1H2	POLD1	19	19	50884531	50905674	Intron of NR1H2(+):691bp before exon 9	Intron of POLD1(+):36bp before exon 7	GRCh37	DELETION	NR1H2 (NM_007121) - POLD1 (NM_002691) rearrangement: c.1028-692:NR1H2_c.759-37:POLD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NR1H2:POLD1}	21143	NA	0	27	10	27
P-0051641-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151985227	152055499	Intron of KMT2C(-):14Kb before exon 7	Intron of KMT2C(-):172bp after exon 2	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.250+173_c.850-14275del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	70272	NA	0	21	10	22
P-0051643-T01-IM6	SOMATIC	ETV1	ETV1	14	7	38060389	13977115	3-UTR of FOXA1(-):180bp after coding stop	Intron of ETV1(-):2Kb before exon 7	GRCh37	TRANSLOCATION	ETV1 (NM_001163147) rearrangement: t(7;14)(p21.2;q21.1)(chr7:g.13977115::chr14:g.38060389)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	8
P-0051644-T01-IM6	SOMATIC	EI24	CHEK1	11	11	125451179	125499230	Exon 9 of EI24(+)	Intron of CHEK1(+):39bp after exon 4	GRCh37	DELETION	EI24 (NM_001007277) - CHEK1 (NM_001274) rearrangement: c.674-1063:EI24_c.354+39:CHEK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EI24:CHEK1}	48051	NA	0	17	10	29
P-0051651-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89349471	89485425	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):151Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.3479:ANKRD11_chr16:g.89485425del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	135954	NA	0	15	10	15
P-0051651-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11095794	11097667	Intron of SMARCA4(+):154bp before exon 3	Exon 5 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.223-155_c.847del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1873	NA	0	8	10	8
P-0051651-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266892	41408717	Exon 5 of CTNNB1(+)	Intron of ULK4(-):31Kb after exon 35	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.563:CTNNB1_chr3:g.41408717del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	141825	NA	0	5	10	5
P-0051651-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1907086	1919928	Intron of WHSC1(+):981bp after exon 3	Exon 5 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.760+981_c.988del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12842	NA	0	24	10	24
P-0051674-T01-IM6	SOMATIC	GPS2	GPS2	17	15	7216806	40262316	Intron of GPS2(-):18bp before exon 8	Intron of EIF2AK4(+):2Kb after exon 9	GRCh37	TRANSLOCATION	GPS2 (NM_004489) rearrangement: t(15;17)(q15.1;p13.1)(chr15:g.40262316::chr17:g.7216806)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	20	10	19
P-0051675-T01-IM6	SOMATIC	PAK7	PAK7	20	20	5951032	9524973	Intron of MCM8(+):2Kb before exon 11	Intron of PAK7(-):42bp after exon 8	GRCh37	DELETION	PAK7 (NM_177990) rearrangement: c.1869+43:PAK7_chr20:g.5951032del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	3573941	NA	0	5	0	5
P-0051716-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11940192	12028525	Intron of ETV6(+):35Kb after exon 2	Intron of ETV6(+):6Kb after exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.163+34679_c.1009+5622del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	88333	NA	0	45	10	46
P-0051724-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741317	1808760	Intron of TACC3(+):111bp before exon 11	Intron of FGFR3(+):82bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-83:FGFR3_c.1942-112:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67443	NA	0	37	10	38
P-0051755-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62292565	62293805	Intron of RTEL1(+):85bp before exon 3	Intron of RTEL1(+):21bp before exon 5	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.103-86_c.396-22del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1240	NA	0	6	10	6
P-0051755-T01-IM6	SOMATIC	PRUNE	EP300	22	1	41568489	150996870	Intron of EP300(+):13bp before exon 28	Intron of PRUNE(+):216bp before exon 4	GRCh37	TRANSLOCATION	PRUNE (NM_021222) - EP300 (NM_001429) rearrangement: t(1;22)(q21.3;q13.2)(chr1:g.150996870::chr22:g.41568489)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PRUNE:EP300}	0	NA	0	112	10	116
P-0051755-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741096	1808806	Intron of TACC3(+):332bp before exon 11	Intron of FGFR3(+):36bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-37:FGFR3_c.1942-333:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67710	NA	0	415	10	476
P-0051756-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39869941	42871205	Intron of ERG(-):345bp after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+346:ERG_c.56-1089:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERG:TMPRSS2}	3001264	NA	0	90	10	97
P-0051757-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21969624	21971049	Intron of CDKN2A(-):1Kb after exon 2	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.457+1277_c.352del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1425	NA	0	58	10	59
P-0051758-T01-IM6	SOMATIC	PTPRT	PTPRT	20	14	40731110	69102171	Intron of PTPRT(-):173bp before exon 27	IGR: 152Kb before ZFP36L1(-)	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(14;20)(q24.1;q12)(chr14:g.69102171::chr20:g.40731110)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	18
P-0051759-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113980548	128792800	Intron of PAX8(-):3Kb before exon 11	IGR: 56Kb before UGGT1(+)	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.1190-2793:PAX8_chr2:g.128792800inv	PRECISE		MANUAL_OK	3to3	-	14812252	NA	0	48	10	46
P-0051760-T01-IM6	SOMATIC	IKBKE	NAV1	1	1	201715755	206653556	Intron of NAV1(+):7Kb after exon 1	Intron of IKBKE(+):100bp after exon 12	GRCh37	DUPLICATION	IKBKE (NM_014002) - NAV1 (NM_020443) rearrangement: c.1340+100:IKBKE_c.1226+27872:NAV1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {IKBKE:NAV1}	4937801	NA	0	14	10	16
P-0050855-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187621641	187629168	Intron of FAT1(-):6Kb after exon 2	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.1814_c.3265+6076del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7527	NA	0	16	10	16
P-0051589-T01-IM6	SOMATIC	EPHA5	EPHA5	4	4	66535311	70602256	Exon 1 of EPHA5(-)	Intron of SULT1B1(-):2Kb before exon 5	GRCh37	INVERSION	EPHA5 (NM_004439) rearrangement: c.150:EPHA5_chr4:g.70602256inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4066945	NA	0	13	10	16
P-0051685-T01-IM6	SOMATIC	STK11	STK11	19	19	1216843	1220550	Intron of STK11(+):2Kb before exon 2	Intron of STK11(+):29bp before exon 5	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-1573_c.598-30del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3707	NA	0	77	0	83
P-0051687-T01-IM6	SOMATIC	INSR	INSR	19	19	7167922	17472086	Intron of INSR(-):56bp after exon 7	Intron of PLVAP(-):445bp before exon 4	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.1610+57:INSR_chr19:g.17472086inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	10304164	NA	0	5	0	5
P-0051797-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52724207	53660712	Intron of PPP2R1A(+):24bp before exon 12	5-UTR of ZNF347(-):17Kb before coding start	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.1364-25:PPP2R1A_chr19:g.53660712inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {ZNF347:PPP2R1A}	936505	NA	0	6	0	6
P-0051804-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36206446	36366974	Intron of RUNX1(-):260bp after exon 7	Intron of RUNX1(-):54Kb after exon 2	GRCh37	INVERSION	RUNX1 (NM_001754) rearrangement: c.58+54165_c.805+261inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	160528	NA	0	34	0	37
P-0051806-T01-IM6	SOMATIC	MON2	SHQ1	12	3	62884515	72873655	Intron of MON2(+):3Kb before exon 3	Exon 6 of SHQ1(-)	GRCh37	TRANSLOCATION	MON2 (NM_015026) - SHQ1 (NM_018130) rearrangement: t(3;12)(p13;q14.1)(chr3:g.72873655::chr12:g.62884515)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MON2:SHQ1}	0	NA	0	5	10	5
P-0051808-T01-IM6	SOMATIC	ABL1	ABL1	9	9	133663337	133759417	Intron of ABL1(+):66Kb before exon 2	Exon 11 of ABL1(+)	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.1740:ABL1_chr9:g.133663337del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	96080	NA	0	4	5	6
P-0051810-T01-IM6	SOMATIC	KMT2D	LRP1	12	12	49426536	57525504	Exon 39 of KMT2D(-)	Intron of LRP1(+):3Kb after exon 1	GRCh37	INVERSION	KMT2D (NM_003482) - LRP1 (NM_002332) rearrangement: c.11952:KMT2D_c.67+2690:LRP1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:LRP1}	8098968	NA	0	147	0	206
P-0051449-T02-IM6	SOMATIC	CALR	CALR	19	19	13051541	13053974	Intron of CALR(+):16bp before exon 7	Intron of CALR(+):376bp before exon 8	GRCh37	INVERSION	CALR (NM_004343) rearrangement: c.817-17_c.961-377inv	PRECISE		MANUAL_OK	5to5	-	2433	NA	0	4	10	4
P-0051449-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970948	22164033	Exon 2 of CDKN2A(-)	IGR: 161Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.410:CDKN2A_chr9:g.22164033del	PRECISE		MANUAL_OK	3to5	-	193085	NA	0	12	10	13
P-0051572-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	412867	431915	Intron of KDM5A(-):3Kb after exon 24	Intron of KDM5A(-):182bp before exon 17	GRCh37	DUPLICATION	KDM5A (NM_001042603) rearrangement: c.2276-182_c.4074+3245dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : out of frame	19048	NA	0	25	10	24
P-0051575-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1732753	1808724	Intron of TACC3(+):64bp after exon 5	Intron of FGFR3(+):63bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+63:FGFR3_c.1461+64:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	75971	NA	0	65	10	66
P-0051575-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	37236168	38147819	IGR: 28Kb before LOC100507420(-)	Intron of WHSC1L1(-):173bp after exon 17	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.3118+174:WHSC1L1_chr8:g.37236168inv	PRECISE		MANUAL_OK	5to5	-	911651	NA	0	9	10	9
P-0051575-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117803654	117869565	IGR: 25Kb before UTP23(+)	Exon 6 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.629:RAD21_chr8:g.117803654inv	PRECISE		MANUAL_OK	3to3	-	65911	NA	0	56	10	56
P-0051741-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32185057	33661882	Intron of NOTCH4(-):14bp before exon 10	Intron of ITPR3(+):400bp after exon 56	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.1625-14:NOTCH4_chr6:g.33661882del	PRECISE		MANUAL_OK	3to5	-	1476825	NA	0	8	10	8
P-0051746-T01-IM6	SOMATIC	CRLF2	CRLF2	X	X	867226	1321434	IGR: 282Kb before SHOX(+)	Intron of CRLF2(-):29bp before exon 4	GRCh37	INVERSION	CRLF2 (NM_022148) rearrangement: c.350-29:CRLF2_chrX:g.867226inv	PRECISE		MANUAL_OK	3to3	-	454208	NA	0	21	10	20
P-0051769-T01-IM6	SOMATIC	CBL	CBL	11	11	119148625	119151301	Intron of CBL(+):71bp after exon 7	Intron of CBL(+):2Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+71_c.1431+1878del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2676	NA	0	5	7	6
P-0051769-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18446863	21688551	Exon 5 of PIK3C2G(+)	Promoter of GYS2(-):571bp from tx start	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.948:PIK3C2G_chr12:g.21688551inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GYS2:PIK3C2G}	3241688	NA	0	6	10	12
P-0051773-T01-IM6	SOMATIC	FGFR2	BICC1	10	10	60394622	123242828	Intron of BICC1(+):14Kb after exon 2	Intron of FGFR2(-):383bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2301+384:FGFR2_c.237+13961:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62848206	NA	0	68	10	85
P-0051782-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48601020	48604893	Intron of SMAD4(+):2Kb before exon 11	3-UTR of SMAD4(+):31Kb after coding stop	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1309-1988:SMAD4_chr18:g.48604893del	IMPPRECISE		MANUAL_OK	3to5	-	3873	NA	0	12	0	12
P-0051803-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41275288	41281336	Exon 9 of CTNNB1(+)	3-UTR of CTNNB1(+):16Kb after coding stop	GRCh37	INVERSION	CTNNB1 (NM_001904) rearrangement: c.1454:CTNNB1_chr3:g.41281336inv	PRECISE		MANUAL_OK	3to3	-	6048	NA	0	7	10	7
P-0051839-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48571929	48573523	5-UTR of SMAD4(+):1Kb before coding start	Exon 2 of SMAD4(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.107:SMAD4_chr18:g.48571929inv	PRECISE		MANUAL_OK	5to5	-	1594	NA	0	2	3	2
P-0051840-T01-IM6	SOMATIC	MAP2K2	MAP2K2	19	19	3182837	4101072	Promoter of S1PR4(+):4Kb from tx start	Exon 6 of MAP2K2(-)	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.650:MAP2K2_chr19:g.3182837inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {S1PR4:MAP2K2}	918235	NA	0	3	7	3
P-0051840-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140486189	140487894	Intron of BRAF(-):1Kb after exon 9	Intron of BRAF(-):510bp before exon 9	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.1141-510_c.1177+1159inv	PRECISE		MANUAL_OK	3to3	-	1705	NA	0	2	10	1
P-0051845-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48602018	48604701	Intron of SMAD4(+):989bp before exon 11	Exon 12 of SMAD4(+)	GRCh37	DUPLICATION	SMAD4 (NM_005359) rearrangement: c.1309-990_c.1523dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2683	NA	0	4	8	4
P-0051855-T01-IM6	SOMATIC	TP53	TP53	17	17	7578052	7589365	Intron of TP53(-):124bp after exon 6	5-UTR of TP53(-):16Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.672+125:TP53_chr17:g.7589365inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11313	NA	0	33	10	33
P-0051858-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135780851	135783271	Intron of TSC1(-):116bp after exon 15	Intron of TSC1(-):514bp before exon 13	GRCh37	DUPLICATION	TSC1 (NM_000368) rearrangement: c.1264-514_c.1997+117dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	2420	NA	0	34	10	36
P-0051859-T01-IM6	SOMATIC	GNAQ	GNAQ	9	9	80428808	80430594	Intron of GNAQ(-):2Kb after exon 3	Exon 3 of GNAQ(-)	GRCh37	DELETION	GNAQ (NM_002072) rearrangement: c.414_c.476+1724del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1786	NA	0	8	10	25
P-0051867-T01-IM6	SOMATIC	ZRSR2	ZRSR2	X	X	15815003	15827409	Intron of ZRSR2(+):3Kb before exon 3	Exon 7 of ZRSR2(+)	GRCh37	DELETION	ZRSR2 (NM_005089) rearrangement: c.122-2992_c.525del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12406	NA	0	15	10	16
P-0051869-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	34848856	41215878	Intron of ZNHIT3(+):113bp after exon 3	Intron of BRCA1(-):12bp after exon 17	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.5152+13:BRCA1_chr17:g.34848856del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	6367022	NA	0	15	10	17
P-0051869-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148513855	148515773	Exon 12 of EZH2(-)	Intron of EZH2(-):564bp before exon 10	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.1000-564_c.1426del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1918	NA	0	8	10	7
P-0051860-T01-IM6	SOMATIC	POLE	POLE	12	12	133042315	133249856	IGR: 25Kb before FBRSL1(+)	Exon 14 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.1367:POLE_chr12:g.133042315del	PRECISE		MANUAL_OK	3to5	-	207541	NA	0	7	10	8
P-0051873-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139401199	139405219	Exon 23 of NOTCH1(-)	Exon 17 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.2626_c.3870del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4020	NA	0	25	10	26
P-0051892-T01-IM6	SOMATIC	MTOR	MTOR	1	1	10618073	11190758	Intron of PEX14(+):22Kb after exon 3	Exon 39 of MTOR(-)	GRCh37	DUPLICATION	MTOR (NM_004958) rearrangement: c.5441:MTOR_chr1:g.10618073dup	IMPPRECISE		MANUAL_OK	5to3	-	572685	NA	0	127	0	168
P-0051892-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37686961	37923655	Exon 14 of CDK12(+)	Intron of IKZF3(-):909bp before exon 7	GRCh37	DUPLICATION	CDK12 (NM_016507) rearrangement: c.3865:CDK12_chr17:g.37923655dup	PRECISE		MANUAL_OK	5to3	-	236694	NA	0	296	10	329
P-0051895-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2100410	2129074	Exon 3 of TSC2(+)	Exon 27 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.148_c.3008del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28664	NA	0	13	0	13
P-0051994-T01-IM6	SOMATIC	E2F3	E2F3	10	6	67261803	20487013	IGR: 69Kb before LINC01515(+)	Exon 5 of E2F3(+)	GRCh37	TRANSLOCATION	E2F3 (NM_001949) rearrangement: t(6;10)(p22.3;q21.3)(chr6:g.20487013::chr10:g.67261803)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	30
P-0051999-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882655	42873584	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3468:TMPRSS2_c.39+64931:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2990929	NA	0	87	10	92
P-0052001-T01-IM6	SOMATIC	APC	APC	5	5	111921551	112111225	IGR: 43Kb before LOC102467214(+)	Intron of APC(+):100bp before exon 5	GRCh37	DELETION	APC (NM_000038) rearrangement: c.423-101:APC_chr5:g.111921551del	PRECISE		MANUAL_OK	3to5	-	189674	NA	0	12	10	12
P-0017592-T04-IM6	SOMATIC	EML4	ALK	2	2	29447548	42502027	Intron of ALK(-):778bp after exon 19	Intron of EML4(+):6Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-5963:EML4_c.3172+779:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054479	NA	1	49	10	48
P-0030617-T02-IM6	SOMATIC	NTRK3	NTRK3	17	15	54517379	88483887	Intron of ANKFN1(+):308bp before exon 8	Exon 15 of NTRK3(-)	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(15;17)(q25.3;q22)(chr15:g.88483887::chr17:g.54517379)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0034798-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28588625	28590267	Exon 23 of FLT3(-)	Intron of FLT3(-):429bp before exon 21	GRCh37	INVERSION	FLT3 (NM_004119) rearrangement: c.2542-429_c.2823inv	PRECISE		MANUAL_OK	3to3	-	1642	NA	0	12	10	12
P-0038248-T06-IM6	SOMATIC	EWSR1	EWSR1	X	22	18240954	29683864	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):730bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.13)(chr22:g.29683864::chrX:g.18240954)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	182	10	146
P-0040364-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57487738	57492903	Intron of NAB2(+):357bp after exon 6	Intron of STAT6(-):42bp before exon 17	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+357:NAB2_c.1892-42:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5165	NA	0	50	10	50
P-0043007-T02-IM6	SOMATIC	KIF5B	RET	10	10	32306812	43610813	Intron of KIF5B(-):167bp after exon 23	Intron of RET(+):629bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2544+168:KIF5B_c.2136+629:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11304001	NA	0	94	10	114
P-0043247-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55180651	55222330	Intron of EGFR(+):29Kb before exon 2	Intron of EGFR(+):485bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-29328_c.889+485del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41679	NA	0	50	10	52
P-0050906-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11165926	11170934	Intron of SMARCA4(+):3Kb before exon 31	Intron of SMARCA4(+):71bp after exon 34	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.4425-3005_c.4911+71inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5008	NA	0	49	10	55
P-0051224-T01-IM6	SOMATIC	RUNX1	RUNX1	22	21	39023165	36259004	Intron of FAM227A(-):857bp before exon 9	Intron of RUNX1(-):135bp after exon 4	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(21;22)(q22.12;q13.1)(chr21:g.36259004::chr22:g.39023165)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	24	10	25
P-0051529-T02-IM6	SOMATIC	ELF3	ELF3	1	1	201974854	201982344	3-UTR of RNPEP(+):23Kb after coding stop	Exon 7 of ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.723:ELF3_chr1:g.201974854del	PRECISE		MANUAL_OK	3to5	-	7490	NA	0	90	10	97
P-0051529-T02-IM6	SOMATIC	RASA1	RASA1	5	5	86561513	86667868	Promoter of RASA1(+):3Kb from tx start	Intron of RASA1(+):66bp before exon 13	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.1699-67:RASA1_chr5:g.86561513del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	106355	NA	0	4	6	4
P-0051818-T01-IM6	SOMATIC	STK11	STK11	19	19	1207202	1218416	Exon 1 of STK11(+)	Exon 2 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.290_c.291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11214	NA	0	4	10	4
P-0051819-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16199568	16211134	Exon 2 of SPEN(+)	Intron of SPEN(+):8Kb after exon 3	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.341_c.881+7961del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11566	NA	0	2	5	2
P-0051820-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39850444	42870953	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):837bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-837:TMPRSS2_c.18+19843:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3020509	NA	0	26	10	26
P-0051894-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77051808	77054864	Exon 11 of PAK1(-)	Exon 10 of PAK1(-)	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.998_c.999del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3056	NA	0	3	7	3
P-0051894-T01-IM6	SOMATIC	CALR	CALR	19	19	13051698	13054348	Exon 7 of CALR(+)	Intron of CALR(+):2bp before exon 8	GRCh37	DELETION	CALR (NM_004343) rearrangement: c.957_c.961-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2650	NA	0	15	10	15
P-0051899-T01-IM6	SOMATIC	STK11	STK11	19	19	1199493	1226407	IGR: 6Kb before STK11(+)	Intron of STK11(+):45bp before exon 9	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.1109-46:STK11_chr19:g.1199493del	PRECISE		MANUAL_OK	3to5	-	26914	NA	0	37	10	38
P-0051908-T01-IM6	SOMATIC	TBX3	TACC1	12	8	115109963	38647047	Exon 8 of TBX3(-)	Intron of TACC1(+):710bp after exon 2	GRCh37	TRANSLOCATION	TBX3 (NM_016569) - TACC1 (NM_006283) rearrangement: t(8;12)(p11.22;q24.21)(chr8:g.38647047::chr12:g.115109963)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TBX3:TACC1}	0	NA	0	36	10	48
P-0051910-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115120794	124271972	Exon 1 of TBX3(-)	Intron of DNAH10(+):378bp before exon 10	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.212:TBX3_chr12:g.124271972del	PRECISE		MANUAL_OK	3to5	-	9151178	NA	0	7	10	7
P-0051910-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831547	42870829	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):713bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-713:TMPRSS2_c.19-14003:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3039282	NA	0	17	10	17
P-0051941-T01-IM6	SOMATIC	NBN	NBN	8	8	90816381	90996536	IGR: 46Kb before RIPK2(+)	Intron of NBN(-):216bp after exon 1	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.37+217:NBN_chr8:g.90816381inv	PRECISE		MANUAL_OK	5to5	-	180155	NA	0	15	10	18
P-0051942-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39830301	42869100	Intron of ERG(-):13Kb before exon 2	Intron of TMPRSS2(-):945bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+946:TMPRSS2_c.19-12757:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3038799	NA	0	4	7	4
P-0051972-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974733	31287893	Exon 1 of CDKN2A(-)	IGR: 899Kb before LINC01242(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3526:CDKN2A_chr9:g.31287893del	PRECISE		MANUAL_OK	3to5	-	9313160	NA	0	95	10	103
P-0051976-T01-IM6	SOMATIC	BIVM	ERCC5	13	13	103475172	103514798	Intron of BIVM-ERCC5(+):663bp after exon 5	Exon 8 of ERCC5(+)	GRCh37	DELETION	BIVM-ERCC5 (NM_001204425) - ERCC5 (NM_000123) rearrangement: c.901+663:BIVM-ERCC5_c.1299:ERCC5del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BIVM-ERCC5:ERCC5}	39626	NA	0	8	7	8
P-0051976-T01-IM6	SOMATIC	STAT5B	BIRC5	17	17	40354369	76216533	Exon 18 of STAT5B(-)	Intron of BIRC5(+):3Kb before exon 4	GRCh37	INVERSION	STAT5B (NM_012448) - BIRC5 (NM_001012271) rearrangement: c.2226:STAT5B_c.409-3013:BIRC5inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {STAT5B:BIRC5}	35862164	NA	0	13	10	15
P-0051976-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268489	55270264	Intron of EGFR(+):383bp after exon 24	Exon 27 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+383_c.3217del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1775	NA	0	60	10	212
P-0051978-T01-IM6	SOMATIC	IQCJ	SCHIP1	3	3	52598294	158959989	Intron of PBRM1(-):45bp before exon 24	Intron of IQCJ-SCHIP1(+):4Kb before exon 2	GRCh37	INVERSION	IQCJ-SCHIP1 (NM_001197113) - PBRM1 (NM_018313) rearrangement: c.10-3643:IQCJ-SCHIP1_c.3617-45:PBRM1inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {IQCJ-SCHIP1:PBRM1}	106361695	NA	0	10	0	10
P-0051979-T01-IM6	SOMATIC	EWSR1	EWSR1	22	8	29683473	115232650	Intron of EWSR1(+):350bp after exon 8	IGR: 1Mb before TRPS1(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(8;22)(q23.3;q12.2)(chr8:g.115232650::chr22:g.29683473)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	34	10	36
P-0016745-T01-IM6	SOMATIC	AXL	AXL	19	19	41723303	41737316	Promoter of AXL(+):2Kb from tx start	Intron of AXL(+):113bp after exon 6	GRCh37	DUPLICATION	AXL (NM_021913) Rearrangement : c.-1995_c.783+113dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	14013	NA	0	8	10	12
P-0039138-T02-IM6	SOMATIC	DICER1	DICER1	14	14	95596211	95597843	Intron of DICER1(-):183bp after exon 7	Intron of DICER1(-):2bp after exon 6	GRCh37	INVERSION	DICER1 (NM_030621) rearrangement: c.438+3_c.573+184inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	1632	NA	0	5	0	5
P-0039138-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1739764	1808645	Intron of TACC3(+):335bp after exon 10	Exon 17 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2258:FGFR3_c.1941+335:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68881	NA	0	5	0	5
P-0045861-T02-IM6	SOMATIC	FOXA1	FOXA1	14	14	32417400	38061034	IGR: 127Kb before ARHGAP5-AS1(-)	Exon 2 of FOXA1(-)	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.955:FOXA1_chr14:g.32417400inv	PRECISE		MANUAL_OK	5to5	-	5643634	NA	0	30	10	33
P-0045861-T02-IM6	SOMATIC	TMPRSS2	PRDM15	21	21	42860378	43238582	Exon 5 of TMPRSS2(-)	Intron of PRDM15(-):1Kb after exon 19	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) - PRDM15 (NM_022115) rearrangement: c.499:TMPRSS2_c.3358+1356:PRDM15dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMPRSS2:PRDM15}	378204	NA	0	51	10	52
P-0052060-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1801117	1886442	Exon 3 of FGFR3(+)	5-UTR of WHSC1(+):16Kb before coding start	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.246:FGFR3_chr4:g.1886442del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGFR3:WHSC1}	85325	NA	0	3	9	3
P-0029225-T02-IM6	SOMATIC	AXL	AXL	19	19	18915513	41726707	IGR: 22Kb before COMP(-)	Exon 2 of AXL(+)	GRCh37	DELETION	AXL (NM_021913) rearrangement: c.252:AXL_chr19:g.18915513del	IMPPRECISE		MANUAL_OK	3to5	-	22811194	NA	0	7	0	7
P-0051769-T02-IM6	SOMATIC	CBL	CBL	11	11	119148625	119151301	Intron of CBL(+):71bp after exon 7	Intron of CBL(+):2Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+71_c.1431+1878del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2676	NA	0	6	5	6
P-0052032-T01-IM6	SOMATIC	ERCC5	ERCC5	17	13	52001046	103524698	IGR: 101Kb before KIF2B(+)	Exon 13 of ERCC5(+)	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) rearrangement: t(13;17)(q33.1;q22)(chr13:g.103524698::chr17:g.52001046)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	333	10	544
P-0052032-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70116622	70120609	Promoter of SOX9(+):538bp from tx start	3-UTR of SOX9(+):3Kb after coding stop	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.-911_c.*81inv	PRECISE		MANUAL_OK	5to5	-	3987	NA	0	3	10	4
P-0052032-T01-IM6	SOMATIC	E2F3	E2F3	6	6	20401158	20402744	Promoter of E2F3(+):978bp from tx start	Exon 1 of E2F3(+)	GRCh37	INVERSION	E2F3 (NM_001949) rearrangement: c.281:E2F3_chr6:g.20401158inv	PRECISE		MANUAL_OK	5to5	-	1586	NA	0	22	10	39
P-0052088-T01-IM6	SOMATIC	EML4	ALK	2	2	29447586	42522876	Intron of ALK(-):740bp after exon 19	Intron of EML4(+):220bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+220:EML4_c.3172+741:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075290	NA	0	20	10	19
P-0052092-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2135325	2143167	Intron of TSC2(+):2bp after exon 36	Intron of PKD1(-):73bp before exon 38	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.4662+2:TSC2_chr16:g.2143167del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	7842	NA	0	35	10	36
P-0052092-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	12	42873895	11710254	Intron of TMPRSS2(-):4Kb before exon 2	5-UTR of LINC01252(+):7Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(12;21)(p13.2;q22.3)(chr12:g.11710254::chr21:g.42873895)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	214	10	220
P-0052095-T01-IM6	SOMATIC	INPP4A	INPP4A	14	2	82874527	99171842	IGR: 803Kb before LINC01467(-)	Intron of INPP4A(+):173bp before exon 17	GRCh37	TRANSLOCATION	INPP4A (NM_001134224) rearrangement: t(2;14)(q11.2;q31.1)(chr2:g.99171842::chr14:g.82874527)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	10
P-0025465-T03-IM6	SOMATIC	SHANK2	FGF19	11	11	69514324	70442132	Exon 3 of FGF19(-)	Intron of SHANK2(-):64Kb after exon 2	GRCh37	DELETION	SHANK2 (NM_012309) - FGF19 (NM_005117) rearrangement: c.1915+63801:SHANK2_c.357:FGF19del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SHANK2:FGF19}	927808	NA	0	16	10	17
P-0026793-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2118845	2222519	Intron of AP3D1(-):14bp before exon 15	Exon 24 of DOT1L(+)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.3351:DOT1L_chr19:g.2118845del	PRECISE		MANUAL_OK	3to5	-	103674	NA	0	2	8	2
P-0037413-T03-IM6	SOMATIC	DNMT1	DNMT1	19	8	10260354	143506167	Intron of DNMT1(-):21bp before exon 25	IGR: 39Kb before BAI1(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(8;19)(q24.3;p13.2)(chr8:g.143506167::chr19:g.10260354)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	44	10	43
P-0048532-T02-IM6	SOMATIC	NEGR1	NEGR1	1	1	72234630	72241999	Intron of NEGR1(-):7Kb after exon 3	Intron of NEGR1(-):19bp before exon 3	GRCh37	DUPLICATION	NEGR1 (NM_173808) rearrangement: c.410-19_c.535+7225dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	7369	NA	0	6	0	6
P-0051671-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433276	49434397	Exon 32 of KMT2D(-)	Exon 31 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.7156_c.8171inv	IMPPRECISE		MANUAL_OK	3to3	-	1121	NA	0	5	0	5
P-0052100-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68847058	68849299	Intron of CDH1(+):157bp before exon 9	Intron of CDH1(+):118bp before exon 10	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.1138-158_c.1321-119del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2241	NA	0	18	10	19
P-0052109-T01-IM6	SOMATIC	TSC2	TSC2	16	16	1995296	2107238	Intron of RPL3L(-):203bp after exon 9	Intron of TSC2(+):59bp after exon 9	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.848+59:TSC2_chr16:g.1995296dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	111942	NA	0	78	10	89
P-0052122-T01-IM6	SOMATIC	TMPRSS2	MGA	21	15	42851086	41968006	Intron of TMPRSS2(-):12bp after exon 7	Intron of MGA(+):6Kb after exon 2	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - MGA (NM_001164273) rearrangement: t(15;21)(q15.1;q22.3)(chr15:g.41968006::chr21:g.42851086)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TMPRSS2:MGA}	0	NA	0	12	10	16
P-0052125-T01-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48895701	79964252	Intron of TFE3(-):20bp after exon 4	Intron of ASPSCR1(+):3Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) rearrangement: t(17;X)(q25.3;p11.23)(chr17:g.79964252::chrX:g.48895701)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASPSCR1:TFE3}	0	NA	0	21	10	21
P-0052126-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36205007	36212099	5-UTR of ZBTB32(+):521bp before coding start	Exon 3 of KMT2B(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.1850:KMT2B_chr19:g.36205007del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZBTB32:KMT2B}	7092	NA	0	86	0	91
P-0052129-T01-IM6	SOMATIC	NCOA3	STK4	20	20	43668460	46265564	Intron of STK4(+):15Kb after exon 10	Intron of NCOA3(+):58bp after exon 12	GRCh37	DUPLICATION	NCOA3 (NM_181659) - STK4 (NM_006282) rearrangement: c.2376+58:NCOA3_c.1305+14689:STK4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NCOA3:STK4}	2597104	NA	0	11	10	11
P-0052129-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	46263431	46264572	Intron of NCOA3(+):492bp after exon 10	Intron of NCOA3(+):62bp before exon 12	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.1112+492_c.1505-63inv	PRECISE		MANUAL_OK	5to5	-	1141	NA	0	18	10	18
P-0052133-T01-IM6	SOMATIC	IFNGR1	IFNGR1	6	6	137522084	139333408	Exon 6 of IFNGR1(-)	IGR: 16Kb before ABRACL(+)	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement: c.795:IFNGR1_chr6:g.139333408inv	PRECISE		MANUAL_OK	5to5	-	1811324	NA	0	3	9	3
P-0052136-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3831341	4071014	Intron of CREBBP(-):34bp before exon 7	Intron of ADCY9(-):13Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.1574-34:CREBBP_chr16:g.4071014inv	PRECISE		MANUAL_OK	3to3	-	239673	NA	0	7	9	7
P-0016642-T02-IM6	SOMATIC	ATM	ATM	11	11	78443927	108124711	Intron of TENM4(-):305bp before exon 21	Exon 13 of ATM(+)	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.2069:ATM_chr11:g.78443927inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATM:TENM4}	29680784	NA	0	22	10	22
P-0021868-T03-IM6	SOMATIC	EWSR1	WT1	22	11	29683712	32416591	Intron of EWSR1(+):589bp after exon 8	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416591::chr22:g.29683712)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	126	10	124
P-0024459-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873052	42869581	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):464bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+465:TMPRSS2_c.40-55508:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2996529	NA	0	87	10	109
P-0036000-T04-IM6	SOMATIC	STK11	STK11	19	19	1192831	1220221	IGR: 13Kb before STK11(+)	Intron of STK11(+):150bp before exon 4	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.465-151:STK11_chr19:g.1192831del	PRECISE		MANUAL_OK	3to5	-	27390	NA	0	41	10	41
P-0037465-T03-IM6	SOMATIC	CREBBP	SLX4	16	16	3647884	3825170	Exon 6 of SLX4(-)	Intron of CREBBP(-):476bp before exon 12	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2159-476:CREBBP_c.1280:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	177286	NA	0	123	10	137
P-0037465-T03-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411867	139450872	Intron of NOTCH1(-):30bp before exon 9	IGR: 9Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1442-30:NOTCH1_chr9:g.139450872del	PRECISE		MANUAL_OK	3to5	-	39005	NA	0	170	10	340
P-0042571-T04-IM6	SOMATIC	EWSR1	WT1	22	11	29684166	32417586	Intron of EWSR1(+):428bp before exon 9	Intron of WT1(-):216bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417586::chr22:g.29684166)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	34	10	34
P-0050023-T02-IM6	SOMATIC	BIRC3	BIRC3	11	11	102198874	102343633	Intron of BIRC3(+):13bp after exon 5	IGR: 48Kb before MMP7(-)	GRCh37	DELETION	BIRC3 (NM_182962) rearrangement: c.1032+13:BIRC3_chr11:g.102343633del	PRECISE		MANUAL_OK	3to5	-	144759	NA	0	4	6	4
P-0051797-T02-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52724123	53660712	Intron of PPP2R1A(+):108bp before exon 12	5-UTR of ZNF347(-):17Kb before coding start	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.1364-109:PPP2R1A_chr19:g.53660712inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {ZNF347:PPP2R1A}	936589	NA	0	23	0	24
P-0052171-T01-IM6	SOMATIC	RFWD2	RFWD2	22	1	32760489	176015617	3-UTR of RFPL3S(-):7Kb after coding stop	Intron of RFWD2(-):157bp before exon 12	GRCh37	TRANSLOCATION	RFWD2 (NM_022457) rearrangement: t(1;22)(q25.2;q12.3)(chr1:g.176015617::chr22:g.32760489)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	8
P-0052171-T01-IM6	SOMATIC	TNFAIP3	TNFAIP3	7	6	5164097	138202379	3-UTR of ZNF890P(-):20Kb after coding stop	Exon 9 of TNFAIP3(+)	GRCh37	TRANSLOCATION	TNFAIP3 (NM_006290) rearrangement: t(6;7)(q23.3;p22.1)(chr6:g.138202379::chr7:g.5164097)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	10	18
P-0052175-T01-IM6	SOMATIC	GATA2	GATA2	3	3	128201476	128202838	Intron of GATA2(-):689bp before exon 5	Exon 4 of GATA2(-)	GRCh37	DELETION	GATA2 (NM_032638) rearrangement: c.882_c.1018-689del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1362	NA	0	11	10	11
P-0052194-T01-IM6	SOMATIC	MAP3K13	MAP3K13	8	3	57267754	185046919	IGR: 20Kb before SDR16C6P(-)	Intron of MAP3K13(+):43Kb after exon 2	GRCh37	TRANSLOCATION	MAP3K13 (NM_004721) rearrangement: t(3;8)(q27.2;q12.1)(chr3:g.185046919::chr8:g.57267754)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	27
P-0052217-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	5226946	5229511	Intron of PTPRS(-):1Kb before exon 17	Exon 15 of PTPRS(-)	GRCh37	DELETION	PTPRS (NM_002850) rearrangement: c.2340_c.2377-1091del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2565	NA	0	32	10	32
P-0052217-T01-IM6	SOMATIC	PPARG	PPARG	3	3	12173159	12393129	Intron of SYN2(+):9Kb before exon 3	Exon 1 of PPARG(+)	GRCh37	DUPLICATION	PPARG (NM_015869) rearrangement: c.38:PPARG_chr3:g.12173159dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PPARG:SYN2}	219970	NA	0	10	10	11
P-0052218-T01-IM6	SOMATIC	CD79B	CD79B	17	17	62009388	62012332	Intron of CD79B(-):166bp after exon 1	Promoter of CD79B(-):6Kb from tx start	GRCh37	DUPLICATION	CD79B (NM_001039933) rearrangement: c.67+167:CD79B_chr17:g.62012332dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	2944	NA	0	20	10	21
P-0052231-T01-IM6	SOMATIC	FGFR3	FGFR3	4	2	1808834	24445176	Intron of FGFR3(+):8bp before exon 18	Intron of ITSN2(-):1Kb before exon 30	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(2;4)(p23.3;p16.3)(chr2:g.24445176::chr4:g.1808834)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	41	10	42
P-0052235-T01-IM6	SOMATIC	BRAF	BRAF	11	7	40779998	140489115	5-UTR of LRRC4C(-):644Kb before coding start	Intron of BRAF(-):2Kb before exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;11)(q34;p12)(chr7:g.140489115::chr11:g.40779998)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	41	10	45
P-0052235-T01-IM6	SOMATIC	BBC3	BBC3	19	19	41704460	47731394	Exon 4 of CYP2S1(+)	Intron of BBC3(-):20bp after exon 2	GRCh37	DELETION	BBC3 (NM_001127240) rearrangement: c.377+21:BBC3_chr19:g.41704460del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	6026934	NA	0	12	10	12
P-0052237-T01-IM6	SOMATIC	KMT2D	KMT2D	12	2	49440400	57407074	Exon 15 of KMT2D(-)	IGR: 728Kb before VRK2(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(2;12)(p16.1;q13.12)(chr2:g.57407074::chr12:g.49440400)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	20
P-0052237-T01-IM6	SOMATIC	INPP4A	INPP4A	2	1	99163093	186653690	Exon 13 of INPP4A(+)	IGR: 4Kb before PACERR(+)	GRCh37	TRANSLOCATION	INPP4A (NM_001134224) rearrangement: t(1;2)(q31.1;q11.2)(chr1:g.186653690::chr2:g.99163093)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	5
P-0052246-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190708684	201160244	Intron of PMS1(+):5bp before exon 6	IGR: 10Kb before SPATS2L(+)	GRCh37	INVERSION	PMS1 (NM_000534) rearrangement: c.583-6:PMS1_chr2:g.201160244inv	PRECISE		MANUAL_OK	5to5	-	10451560	NA	0	47	10	54
P-0052249-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71916905	71941437	IGR: 11Kb before FOLR2(+)	Exon 10 of INPPL1(+)	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.1122:INPPL1_chr11:g.71916905del	PRECISE		MANUAL_OK	3to5	-	24532	NA	0	36	10	37
P-0052249-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21563067	21567759	Exon 4 of LATS2(-)	Intron of LATS2(-):2Kb before exon 3	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.343-2216_c.852del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4692	NA	0	41	10	42
P-0052272-T01-IM6	SOMATIC	NCOR1	NCOR1	17	7	15989799	44731822	Intron of NCOR1(-):43bp before exon 23	Intron of OGDH(+):2Kb before exon 11	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(7;17)(p13;p12)(chr7:g.44731822::chr17:g.15989799)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	7	0	6
P-0052272-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876052	42867101	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):596bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-596:TMPRSS2_c.40-58508:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2991049	NA	0	38	0	38
P-0052272-T01-IM6	SOMATIC	NCOR1	NCOR1	X	17	120387632	15976909	IGR: 206Kb before GLUD2(+)	Intron of NCOR1(-):26bp before exon 28	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(17;X)(p12;q24)(chr17:g.15976909::chrX:g.120387632)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	7	0	7
P-0052277-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685235	128649484	Intron of EWSR1(+):460bp after exon 9	Intron of FLI1(+):2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128649484::chr22:g.29685235)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	187	10	204
P-0052291-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99312545	99465630	Intron of IGF1R(+):61Kb after exon 2	Exon 11 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.640+61209_c.2455del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	153085	NA	0	17	10	18
P-0052291-T01-IM6	SOMATIC	PTK2	DOT1L	19	8	2222295	141713215	Exon 24 of DOT1L(+)	Intron of PTK2(-):409bp before exon 25	GRCh37	TRANSLOCATION	PTK2 (NM_005607) - DOT1L (NM_032482) rearrangement: t(8;19)(q24.3;p13.3)(chr8:g.141713215::chr19:g.2222295)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTK2:DOT1L}	0	NA	0	15	10	18
P-0000572-T01-IM3	SOMATIC	EGFR	EGFR	7	7	55108288	55222193	Intron of EGFR(+): 21Kb after exon 1	Intron of EGFR(+): 348bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII Deletion: c.88+21230_c.889+348del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	113905	NA	0	5	11	6
P-0004381-T02-IM6	SOMATIC	TSC2	TSC2	16	16	2105325	2123346	Intron of TSC2(+):77bp before exon 6	Intron of TSC2(+):362bp after exon 21	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.482-78_c.2355+362dup	PRECISE		MANUAL_OK	5to3	Duplication of 16 exons : out of frame	18021	NA	0	25	10	25
P-0004381-T02-IM6	SOMATIC	PSMA7	RTEL1	20	20	60713495	62316995	Intron of PSMA7(-):149bp before exon 5	Intron of RTEL1(+):45bp after exon 15	GRCh37	INVERSION	PSMA7 (NM_002792) - RTEL1 (NM_032957) rearrangement: c.472-149:PSMA7_c.1338+45:RTEL1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PSMA7:RTEL1}	1603500	NA	0	33	10	34
P-0006132-T03-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72786308	72832215	IGR: 30Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.4366:ZFHX3_chr16:g.72786308del	PRECISE		MANUAL_OK	3to5	-	45907	NA	0	13	10	13
P-0006429-T02-IM6	SOMATIC	FGFR3	TNIP2	4	4	1808753	2757822	Intron of FGFR3(+):89bp before exon 18	Exon 1 of TNIP2(-)	GRCh37	INVERSION	FGFR3 (NM_000142) - TNIP2 (NM_024309) fusion: c.2275-90:FGFR3_c.195:TNIP2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FGFR3:TNIP2}	949069	NA	0	139	10	139
P-0006429-T02-IM6	SOMATIC	TERT	TERT	5	5	1295209	15006113	Promoter of TERT(-):42Kb from tx start	IGR: 180Kb before MIR4637(-)	GRCh37	INVERSION	TERT (NM_198253) rearrangement : chr5:g.1295209_chr5:g.15006113inv	IMPPRECISE		MANUAL_OK	5to5	-	13710904	NA	0	108	0	128
P-0008928-T02-IM6	SOMATIC	TP53	TP53	17	17	7579323	7585201	Exon 4 of TP53(-)	5-UTR of TP53(-):12Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.364:TP53_chr17:g.7585201dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5878	NA	0	53	10	82
P-0008928-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39886574	42867844	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1339:TMPRSS2_c.39+61012:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2981270	NA	0	58	10	58
P-0010083-T01-IM5	SOMATIC	PARP12	BRAF	7	7	139759028	140491237	Intron of PARP12(-): 1Kb before exon 2	Intron of BRAF(-): 3Kb after exon 8	GRCh37	INVERSION	PARP12 (NM_022750) - BRAF (NM_004333) rearrangement: c.327-1194:PARP12_c.1140+2871;BRAFinv.	PRECISE		MANUAL_OK	3to3	-	732209	NA	0	12	13	12
P-0010811-T02-IM6	SOMATIC	PIK3C2G	GRIN2B	12	12	13945447	18467045	Intron of GRIN2B(-):39Kb before exon 3	Intron of PIK3C2G(+):47bp after exon 6	GRCh37	INVERSION	PIK3C2G (NM_004570) - GRIN2B (NM_000834) rearrangement: c.1137+47:PIK3C2G_c.412-38598:GRIN2Binv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PIK3C2G:GRIN2B}	4521598	NA	0	16	0	16
P-0010811-T02-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883146	37886758	Exon 25 of ERBB2(+)	Promoter of ERBB2(+):31Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3049:ERBB2_chr17:g.37886758del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3612	NA	0	145	10	150
P-0028098-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970910	21972202	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):995bp before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.448_c.194-995del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1292	NA	0	150	10	350
P-0033466-T03-IM6	SOMATIC	ARID1B	ARID1B	6	6	157452943	157454228	Intron of ARID1B(+):1Kb before exon 8	Exon 8 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2372-1219_c.2438del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1285	NA	0	36	10	40
P-0041584-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40027774	42870351	3-UTR of ERG(-):6Kb after coding stop	Intron of TMPRSS2(-):235bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-235:TMPRSS2_chr21:g.40027774del	IMPPRECISE		MANUAL_OK	3to5	-	2842577	NA	0	33	0	33
P-0046153-T03-IM6	SOMATIC	CDKN1B	CDKN1B	12	8	12870997	87279220	Exon 1 of CDKN1B(+)	IGR: 53Kb before SLC7A13(-)	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(8;12)(q21.3;p13.1)(chr8:g.87279220::chr12:g.12870997)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	48	10	50
P-0050471-T03-IM6	SOMATIC	NF1	NF1	17	17	29556938	29558612	Exon 22 of NF1(+)	Intron of NF1(+):478bp before exon 25	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2936_c.3198-479del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1674	NA	0	14	10	23
P-0051012-T02-IM6	SOMATIC	BAP1	BAP1	13	3	33954066	52443644	Intron of STARD13(-):60Kb after exon 5	Intron of BAP1(-):20bp before exon 3	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;13)(p21.1;q13.1)(chr3:g.52443644::chr13:g.33954066)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	16	10	18
P-0051369-T02-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8073366	8188797	Exon 4 of ERRFI1(-)	IGR: 80Kb before LOC102724539(+)	GRCh37	INVERSION	ERRFI1 (NM_018948) rearrangement: c.1293:ERRFI1_chr1:g.8188797inv	PRECISE		MANUAL_OK	5to5	-	115431	NA	0	3	7	4
P-0051912-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39848605	42870878	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):762bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-762:TMPRSS2_c.18+21682:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3022273	NA	0	31	10	32
P-0052007-T02-IM6	SOMATIC	UPF1	UPF1	19	19	18974882	18976509	Intron of UPF1(+):96bp before exon 20	Exon 22 of UPF1(+)	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: c.2776-97_c.3159del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1627	NA	0	10	10	10
P-0052121-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115112020	115122501	Exon 7 of TBX3(-)	Promoter of TBX3(-):14Kb from tx start	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.1720:TBX3_chr12:g.115122501del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10481	NA	0	8	10	8
P-0052121-T01-IM6	SOMATIC	TBX3	TBX3	12	9	115109985	14323800	Exon 8 of TBX3(-)	Intron of NFIB(-):16Kb before exon 2	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(9;12)(p22.3;q24.21)(chr9:g.14323800::chr12:g.115109985)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TBX3:NFIB}	0	NA	0	15	10	15
P-0052121-T01-IM6	SOMATIC	JAK2	CNTLN	9	9	5022261	17267360	Intron of JAK2(+):48bp after exon 3	Intron of CNTLN(+):6Kb before exon 6	GRCh37	DELETION	JAK2 (NM_004972) - CNTLN (NM_017738) rearrangement: c.226+48:JAK2_c.850-6371:CNTLNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {JAK2:CNTLN}	12245099	NA	0	2	5	4
P-0052121-T01-IM6	SOMATIC	STAG2	GALK2	X	15	123202486	49527913	Exon 24 of STAG2(+)	Intron of GALK2(+):134bp before exon 4	GRCh37	TRANSLOCATION	STAG2 (NM_001042749) - GALK2 (NM_002044) rearrangement: t(15;X)(q21.2;q25)(chr15:g.49527913::chrX:g.123202486)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAG2:GALK2}	0	NA	0	5	10	5
P-0052131-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39812936	42872211	Intron of ERG(-):4Kb after exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2095:TMPRSS2_c.236+4391:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3059275	NA	0	21	10	23
P-0052131-T01-IM6	SOMATIC	MELK	PAX5	9	9	36635354	36840564	Intron of MELK(+):2Kb after exon 10	Exon 10 of PAX5(-)	GRCh37	INVERSION	MELK (NM_014791) - PAX5 (NM_016734) rearrangement: c.834+2157:MELK_c.1169:PAX5inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MELK:PAX5}	205210	NA	0	2	10	2
P-0052145-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974714	21987198	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):7Kb after exon 1	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.193+6940_c.194-3507del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12484	NA	0	31	10	31
P-0052156-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55202800	55222082	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):237bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-7179_c.889+237del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	19282	NA	0	291	0	1285
P-0052159-T01-IM6	SOMATIC	PTEN	PTEN	10	1	89685380	114517180	Intron of PTEN(+):66bp after exon 3	3-UTR of HIPK1(+):20Kb after coding stop	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(1;10)(p13.2;q23.31)(chr1:g.114517180::chr10:g.89685380)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	38	10	37
P-0052257-T01-IM6	SOMATIC	CHURC1	FNTB	14	6	65464115	33287446	Intron of CHURC1-FNTB(+):7Kb before exon 4	Exon 6 of DAXX(-)	GRCh37	TRANSLOCATION	CHURC1-FNTB (NM_001202559) - DAXX (NM_001141970) rearrangement: t(6;14)(p21.32;q23.3)(chr6:g.33287446::chr14:g.65464115)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CHURC1-FNTB:DAXX}	0	NA	0	22	10	20
P-0052257-T01-IM6	SOMATIC	B2M	B2M	15	15	45007900	45009803	Intron of B2M(+):1bp after exon 2	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346+1:B2M_chr15:g.45009803del	IMPPRECISE		MANUAL_OK	3to5	-	1903	NA	0	22	0	25
P-0052257-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89807115	89854092	Intron of FANCA(-):96bp after exon 38	Intron of FANCA(-):3Kb before exon 15	GRCh37	DUPLICATION	FANCA (NM_000135) rearrangement: c.1360-2720_c.3828+97dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 24 exons : in frame	46977	NA	0	9	0	9
P-0052257-T01-IM6	SOMATIC	ERF	ERF	19	19	42712047	42754270	Intron of DEDD2(-):2Kb after exon 4	Intron of ERF(-):176bp before exon 3	GRCh37	INVERSION	ERF (NM_006494) rearrangement: c.258-176:ERF_chr19:g.42712047inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	42223	NA	0	5	10	5
P-0052258-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971295	22026285	Intron of CDKN2A(-):88bp before exon 2	5-UTR of CDKN2B-AS1(+):95Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-88:CDKN2A_chr9:g.22026285del	IMPPRECISE		MANUAL_OK	3to5	-	54990	NA	0	8	0	8
P-0052260-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	12	8	4221014	38146070	IGR: 137Kb before CCND2-AS1(-)	Exon 19 of WHSC1L1(-)	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) rearrangement: t(8;12)(p11.23;p13.32)(chr8:g.38146070::chr12:g.4221014)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	15
P-0052324-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740943	1808803	Intron of TACC3(+):485bp before exon 11	Intron of FGFR3(+):39bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-40:FGFR3_c.1942-486:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67860	NA	0	24	10	25
P-0052324-T01-IM6	SOMATIC	NKX3	MAP2	8	2	23538807	209817560	Exon 2 of NKX3-1(-)	IGR: 471Kb before MAP2(+)	GRCh37	TRANSLOCATION	NKX3-1 (NM_006167) rearrangement: t(2;8)(q34;p21.2)(chr2:g.209817560::chr8:g.23538807)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0052327-T01-IM6	SOMATIC	PEPD	POLD1	19	19	33892423	50917974	Intron of PEPD(-):203bp after exon 10	Intron of POLD1(+):97bp before exon 20	GRCh37	INVERSION	PEPD (NM_000285) - POLD1 (NM_002691) rearrangement: c.967+204:PEPD_c.2389-98:POLD1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PEPD:POLD1}	17025551	NA	0	52	10	55
P-0052327-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212587124	212798880	Exon 7 of ERBB4(-)	Intron of ERBB4(-):13Kb after exon 3	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.421+13275_c.877dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	211756	NA	0	61	10	63
P-0052331-T01-IM6	SOMATIC	PRKAR1A	FAM20A	17	17	66521174	66567442	Intron of PRKAR1A(+):75bp after exon 6	Intron of FAM20A(-):16Kb before exon 2	GRCh37	INVERSION	PRKAR1A (NM_212471) - FAM20A (NM_017565) rearrangement: c.549+75:PRKAR1A_c.405-15558:FAM20Ainv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PRKAR1A:FAM20A}	46268	NA	0	23	10	23
P-0052338-T01-IM6	SOMATIC	LIPH	MAP3K13	3	3	185183403	185237927	Intron of MAP3K13(+):131bp before exon 9	Intron of LIPH(-):830bp before exon 6	GRCh37	INVERSION	LIPH (NM_139248) - MAP3K13 (NM_004721) rearrangement: c.719-830:LIPH_c.1389-132:MAP3K13inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LIPH:MAP3K13}	54524	NA	0	63	10	72
P-0052346-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39899935	42869271	Intron of ERG(-):48Kb after exon 3	Intron of TMPRSS2(-):774bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+775:TMPRSS2_c.39+47651:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2969336	NA	0	10	10	10
P-0052351-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52236052	52440925	Intron of ALAS1(+):470bp before exon 4	Intron of BAP1(-):2bp before exon 8	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.581-2:BAP1_chr3:g.52236052dup	PRECISE		MANUAL_OK	5to3	-	204873	NA	0	116	10	141
P-0052351-T01-IM6	SOMATIC	TEK	TEK	9	9	27167419	27228207	Intron of TEK(+):1Kb before exon 3	Exon 22 of TEK(+)	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.365-1074_c.3204del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	60788	NA	0	91	10	101
P-0052353-T01-IM6	SOMATIC	BRCA1	BRCA1	17	14	41244079	24919458	Exon 10 of BRCA1(-)	5-UTR of LOC101927045(+):52Kb before coding start	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(14;17)(q12;q21.31)(chr14:g.24919458::chr17:g.41244079)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	23
P-0052361-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157494957	157507624	Intron of ARID1B(+):184bp before exon 11	Intron of ARID1B(+):2Kb after exon 13	GRCh37	DUPLICATION	ARID1B (NM_020732) rearrangement: c.3026-185_c.3550+2055dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	12667	NA	0	3	5	3
P-0052362-T01-IM6	SOMATIC	ATM	ATM	11	11	84400019	108129621	Intron of DLG2(-):154Kb before exon 7	Intron of ATM(+):91bp before exon 16	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.2377-92:ATM_chr11:g.84400019del	IMPPRECISE		MANUAL_OK	3to5	-	23729602	NA	0	11	0	11
P-0052362-T01-IM6	SOMATIC	MAPKAP1	MAPKAP1	9	9	128268550	128280273	Intron of MAPKAP1(-):38bp after exon 8	Intron of MAPKAP1(-):12Kb before exon 8	GRCh37	INVERSION	MAPKAP1 (NM_001006617) rearrangement: c.959-11577_c.1066+39inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11723	NA	0	93	10	100
P-0052363-T01-IM6	SOMATIC	MACF1	MTOR	1	1	11175034	39949500	Intron of MTOR(-):90bp before exon 52	Intron of MACF1(+):772bp before exon 92	GRCh37	INVERSION	MACF1 (NM_012090) - MTOR (NM_004958) rearrangement: c.15907-773:MACF1_c.7090-90:MTORinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MACF1:MTOR}	28774466	NA	0	23	10	23
P-0052363-T01-IM6	SOMATIC	CD74	ROS1	6	5	117647256	149783692	Intron of ROS1(-):130bp after exon 33	Intron of CD74(-):550bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783692::chr6:g.117647256)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	156	10	161
P-0052375-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48485783	48603058	IGR: 9Kb before ELAC1(+)	Exon 11 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1359:SMAD4_chr18:g.48485783del	PRECISE		MANUAL_OK	3to5	-	117275	NA	0	64	10	66
P-0052381-T01-IM6	SOMATIC	EP300	EP300	22	22	41536202	41557464	Exon 9 of EP300(+)	Intron of EP300(+):738bp after exon 20	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.1819_c.3671+738del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21262	NA	0	50	10	60
P-0052383-T01-IM6	SOMATIC	ETV6	ETV6	15	12	101590135	12025136	Intron of LRRK1(+):147bp after exon 23	Intron of ETV6(+):2Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;15)(p13.2;q26.3)(chr12:g.12025136::chr15:g.101590135)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	166	10	207
P-0052383-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139354634	139397029	Intron of SEC16A(-):59bp before exon 14	Intron of NOTCH1(-):89bp before exon 28	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.4992-59:SEC16A_c.5168-89:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SEC16A:NOTCH1}	42395	NA	0	26	10	26
P-0052384-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968838	22021273	Intron of CDKN2A(-):597bp before exon 3	5-UTR of CDKN2B-AS1(+):100Kb before coding start	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-597:CDKN2A_chr9:g.22021273del	PRECISE		MANUAL_OK	3to5	-	52435	NA	0	20	10	19
P-0052409-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611691	51582486	Intron of RET(+):340bp before exon 12	Intron of TIMM23B(+):150Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) rearrangement: c.618+214:NCOA4_c.2137-341:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7970795	NA	0	29	10	30
P-0052410-T01-IM6	SOMATIC	AP2A1	KMT2B	19	19	36218342	50305788	Exon 16 of KMT2B(+)	Intron of AP2A1(+):390bp after exon 15	GRCh37	DUPLICATION	AP2A1 (NM_014203) - KMT2B (NM_014727) rearrangement: c.2115-3:AP2A1_c.4121:KMT2Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AP2A1:KMT2B}	14087446	NA	0	43	10	44
P-0052412-T01-IM6	SOMATIC	AURKB	AURKB	17	9	8108352	93044723	Exon 9 of AURKB(-)	IGR: 18Kb before LINC01508(-)	GRCh37	TRANSLOCATION	AURKB (NM_004217) rearrangement: t(9;17)(q22.2;p13.1)(chr9:g.93044723::chr17:g.8108352)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0052415-T01-IM6	SOMATIC	CDH1	CDH1	16	6	68867274	33066112	Exon 16 of CDH1(+)	IGR: 14Kb before HLA-DPB2(+)	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(6;16)(p21.32;q22.1)(chr6:g.33066112::chr16:g.68867274)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	32
P-0052420-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157528106	157709959	Exon 20 of ARID1B(+)	Promoter of TMEM242(-):94bp from tx start	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.5831:ARID1B_chr6:g.157709959del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	181853	NA	0	96	10	101
P-0052423-T01-IM6	SOMATIC	STK11	STK11	19	19	1221277	1226618	Exon 6 of STK11(+)	Exon 9 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.800_c.1274del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5341	NA	0	79	10	82
P-0052428-T01-IM6	SOMATIC	DIS3	DIS3	13	7	73355948	30484921	Exon 1 of DIS3(-)	Intron of NOD1(-):835bp after exon 9	GRCh37	TRANSLOCATION	DIS3 (NM_014953) rearrangement: t(7;13)(p14.3;q22.1)(chr7:g.30484921::chr13:g.73355948)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	10	0	12
P-0052429-T01-IM6	SOMATIC	STAT5B	STAT5B	17	3	40379376	70193186	Intron of STAT5B(-):170bp after exon 3	IGR: 144Kb before LINC01212(+)	GRCh37	TRANSLOCATION	STAT5B (NM_012448) rearrangement: t(3;17)(p13;q21.2)(chr3:g.70193186::chr17:g.40379376)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	14
P-0052432-T01-IM6	SOMATIC	BRAF	BRAF	7	7	136669285	140487885	3-UTR of LOC349160(-):180Kb after coding stop	Intron of BRAF(-):501bp before exon 9	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.1141-501:BRAF_chr7:g.136669285dup	PRECISE		MANUAL_OK	5to3	-	3818600	NA	0	38	10	40
P-0052432-T01-IM6	SOMATIC	ABL1	ABL1	9	9	133431343	133730048	IGR: 21Kb before LOC100272217(-)	Intron of ABL1(+):139bp before exon 3	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.254-140:ABL1_chr9:g.133431343del	PRECISE		MANUAL_OK	3to5	-	298705	NA	0	6	6	6
P-0052471-T01-IM6	SOMATIC	HERC1	KMT2A	15	11	64053373	118360710	Intron of HERC1(-):3Kb before exon 4	Intron of KMT2A(+):108bp after exon 12	GRCh37	TRANSLOCATION	HERC1 (NM_003922) - KMT2A (NM_001197104) rearrangement: t(11;15)(q23.3;q22.31)(chr11:g.118360710::chr15:g.64053373)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {HERC1:KMT2A}	0	NA	0	6	8	6
P-0052473-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55136054	55222462	Intron of EGFR(+):49Kb after exon 1	Intron of EGFR(+):617bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+48996_c.889+617del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	86408	NA	0	10	0	11
P-0052473-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268758	55269571	Intron of EGFR(+):122bp before exon 25	Intron of EGFR(+):96bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-123_c.3162+96del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	813	NA	0	43	0	5639
P-0052486-T01-IM6	SOMATIC	PPP4R2	PPP4R2	3	1	73113191	174154035	Exon 7 of PPP4R2(+)	5-UTR of RABGAP1L(+):34Kb before coding start	GRCh37	TRANSLOCATION	PPP4R2 (NM_174907) rearrangement: t(1;3)(q25.1;p13)(chr1:g.174154035::chr3:g.73113191)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PPP4R2:RABGAP1L}	0	NA	0	8	0	8
P-0052487-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25441549	25468946	IGR: 14Kb before DNMT3A(-)	Intron of DNMT3A(-):13bp before exon 12	GRCh37	DUPLICATION	DNMT3A (NM_022552) rearrangement: c.1430-13:DNMT3A_chr2:g.25441549dup	PRECISE		MANUAL_OK	5to3	-	27397	NA	0	4	10	4
P-0052490-T01-IM6	SOMATIC	KMT2B	HIF3A	19	19	36211918	46802141	Exon 3 of KMT2B(+)	Intron of HIF3A(+):2Kb after exon 1	GRCh37	DELETION	KMT2B (NM_014727) - HIF3A (NM_152795) rearrangement: c.1669:KMT2B_c.26+1782:HIF3Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2B:HIF3A}	10590223	NA	0	112	0	124
P-0052501-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52434933	52440876	Promoter of BAP1(-):86bp from tx start	Exon 8 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.628:BAP1_chr3:g.52434933del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5943	NA	0	26	10	28
P-0052511-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914902	42874197	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4081:TMPRSS2_c.39+32684:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2959295	NA	0	7	10	8
P-0017319-T08-IM6	SOMATIC	BCL2	PTPRM	18	18	8144221	60985731	Intron of PTPRM(+):444bp after exon 14	Exon 2 of BCL2(-)	GRCh37	INVERSION	BCL2 (NM_000633) - PTPRM (NM_001105244) rearrangement: c.169:BCL2_c.2300+444:PTPRMinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BCL2:PTPRM}	52841510	NA	0	11	10	12
P-0033799-T10-IM6	SOMATIC	KMT2A	KMT2A	11	4	118355110	150937415	Intron of KMT2A(+):81bp after exon 9	IGR: 62Kb before DCLK2(+)	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(4;11)(q31.23;q23.3)(chr4:g.150937415::chr11:g.118355110)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	17	0	19
P-0033799-T10-IM6	SOMATIC	TRAP1	SLX4	16	16	3634944	3767194	Intron of SLX4(-):72bp before exon 13	Intron of TRAP1(-):227bp after exon 1	GRCh37	DELETION	TRAP1 (NM_016292) - SLX4 (NM_032444) rearrangement: c.88+228:TRAP1_c.4637-72:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRAP1:SLX4}	132250	NA	1	65	10	66
P-0033799-T10-IM6	SOMATIC	MALT1	MALT1	18	18	56402552	56433959	Exon 13 of MALT1(+)	IGR: 95Kb before MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.1594:MALT1_chr18:g.56433959del	PRECISE		MANUAL_OK	3to5	-	31407	NA	0	37	10	37
P-0033799-T10-IM6	SOMATIC	MDM2	MDM2	21	12	17817717	69233245	5-UTR of MIR99AHG(+):164Kb before coding start	Exon 11 of MDM2(+)	GRCh37	TRANSLOCATION	MDM2 (NM_002392) rearrangement: t(12;21)(q15;q21.1)(chr12:g.69233245::chr21:g.17817717)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MDM2:MIR99AHG}	0	NA	0	73	10	73
P-0034906-T03-IM6	SOMATIC	ERBB2	ERBB2	17	17	37866550	78090552	Intron of ERBB2(+):42bp before exon 7	Intron of GAA(+):214bp before exon 16	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.760-43:ERBB2_chr17:g.78090552inv	PRECISE		MANUAL_OK	5to5	-	40224002	NA	0	97	10	107
P-0035153-T03-IM6	SOMATIC	KIAA1549	BRAF	7	7	138548248	140491093	Intron of KIAA1549(-):2Kb before exon 16	Intron of BRAF(-):3Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4930-2046:KIAA1549_c.1140+3015:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1942845	NA	0	211	10	240
P-0045912-T02-IM6	SOMATIC	EML4	ALK	2	2	29446507	42545675	Intron of ALK(-):113bp before exon 20	Intron of EML4(+):1Kb after exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2154+1011:EML4_c.3173-113:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EML4:ALK}	13099168	NA	0	26	10	26
P-0045962-T03-IM6	SOMATIC	NCOR1	NCOR1	17	17	15941895	15943667	Intron of NCOR1(-):851bp after exon 44	Intron of NCOR1(-):87bp after exon 43	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.6733+88_c.6955+852del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1772	NA	0	11	10	11
P-0051760-T02-IM6	SOMATIC	IKBKE	NAV1	1	1	201715756	206653558	Intron of NAV1(+):7Kb after exon 1	Intron of IKBKE(+):102bp after exon 12	GRCh37	DUPLICATION	IKBKE (NM_014002) - NAV1 (NM_020443) rearrangement: c.1340+102:IKBKE_c.1226+27873:NAV1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {IKBKE:NAV1}	4937802	NA	0	20	0	21
P-0052110-T02-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	53724824	55143503	IGR: 4Kb before RASL11B(+)	Intron of PDGFRA(+):51bp before exon 13	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1787-52:PDGFRA_chr4:g.53724824del	PRECISE		MANUAL_OK	3to5	-	1418679	NA	0	6	10	7
P-0052516-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	71954104	72830791	Intron of IST1(+):537bp before exon 5	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.5790:ZFHX3_chr16:g.71954104del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	876687	NA	0	4	10	4
P-0052539-T01-IM6	SOMATIC	CUL3	DOCK10	2	2	225422338	225786863	Intron of CUL3(-):37bp after exon 2	Intron of DOCK10(-):5Kb before exon 3	GRCh37	DUPLICATION	CUL3 (NM_003590) - DOCK10 (NM_014689) rearrangement: c.264+38:CUL3_c.244-5362:DOCK10dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CUL3:DOCK10}	364525	NA	0	14	10	14
P-0052542-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18965785	22414804	Exon 10 of UPF1(+)	IGR: 53Kb before ZNF676(-)	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.1363:UPF1_chr19:g.22414804inv	PRECISE		MANUAL_OK	5to5	-	3449019	NA	0	3	7	3
P-0052567-T01-IM6	SOMATIC	EP300	EP300	22	22	41534021	41574275	Intron of EP300(+):227bp after exon 8	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.1760+227_c.6560del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	40254	NA	0	3	0	3
P-0052567-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135786455	135789222	Exon 11 of TSC1(-)	Intron of TSC1(-):1Kb before exon 9	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.738-1378_c.1075del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2767	NA	0	27	10	28
P-0052569-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	2	38153568	67268969	Intron of WHSC1L1(-):98bp before exon 16	IGR: 45Kb before LOC102800447(+)	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) rearrangement: t(2;8)(p14;p11.23)(chr2:g.67268969::chr8:g.38153568)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	41	10	42
P-0052582-T01-IM6	SOMATIC	AGAP3	BRAF	7	7	140485658	150835371	Intron of BRAF(-):2Kb after exon 9	Exon 12 of AGAP3(+)	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) fusion: c.1637:AGAP3_c.1177+1690:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {AGAP3:BRAF}	10349713	NA	0	101	10	100
P-0052583-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	39630495	46725923	Intron of MACF1(+):66Kb before exon 2	Intron of RAD54L(+):152bp after exon 6	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.407+152:RAD54L_chr1:g.39630495inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7095428	NA	0	15	10	15
P-0052604-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265770	41266376	Intron of CTNNB1(+):198bp after exon 2	Intron of CTNNB1(+):68bp before exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.13+198_c.242-69del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	606	NA	0	3	4	3
P-0052605-T01-IM6	SOMATIC	TSHR	TSHR	14	14	81415233	81422128	IGR: 7Kb before TSHR(+)	Exon 1 of TSHR(+)	GRCh37	INVERSION	TSHR (NM_000369) rearrangement: c.104:TSHR_chr14:g.81415233inv	PRECISE		MANUAL_OK	5to5	-	6895	NA	0	106	10	125
P-0052618-T01-IM6	SOMATIC	STK40	STK40	1	1	36820860	36822033	Exon 6 of STK40(-)	Intron of STK40(-):999bp before exon 6	GRCh37	DELETION	STK40 (NM_032017) rearrangement: c.343-999_c.517del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1173	NA	0	7	10	9
P-0052622-T01-IM6	SOMATIC	FGF4	FGF4	19	11	46460334	69588376	Intron of NOVA2(-):3Kb before exon 3	Intron of FGF4(-):123bp before exon 3	GRCh37	TRANSLOCATION	FGF4 (NM_002007) rearrangement: t(11;19)(q13.3;q13.32)(chr11:g.69588376::chr19:g.46460334)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	11	0	11
P-0052628-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63405633	63412087	3-UTR of AMER1(-):4Kb after coding stop	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.1080:AMER1_chrX:g.63405633del	PRECISE		MANUAL_OK	3to5	-	6454	NA	0	79	10	81
P-0052635-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685095	128660258	Intron of EWSR1(+):320bp after exon 9	Intron of FLI1(+):8Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128660258::chr22:g.29685095)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	144	10	151
P-0052394-T02-IM6	SOMATIC	SUZ12	SUZ12	17	11	30310084	118014563	Exon 9 of SUZ12(+)	Exon 2 of SCN4B(-)	GRCh37	TRANSLOCATION	SUZ12 (NM_015355) rearrangement: t(11;17)(q23.3;q11.2)(chr11:g.118014563::chr17:g.30310084)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	9	0	12
P-0052677-T01-IM6	SOMATIC	ATM	ATM	11	11	106503188	108124644	IGR: 42Kb before GUCY1A2(-)	Exon 13 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.2002:ATM_chr11:g.106503188del	PRECISE		MANUAL_OK	3to5	-	1621456	NA	0	48	10	48
P-0052679-T01-IM6	SOMATIC	JAK1	JAK1	1	1	65309916	65407812	Intron of JAK1(-):18bp before exon 17	5-UTR of JAK1(-):108Kb before coding start	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.2252-18:JAK1_chr1:g.65407812del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	97896	NA	0	63	10	65
P-0052718-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39838197	42860588	Intron of ERG(-):21Kb before exon 2	Intron of TMPRSS2(-):148bp before exon 5	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-20653:ERG_c.437-148:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERG:TMPRSS2}	3022391	NA	0	9	10	12
P-0052720-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39867043	42871087	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):971bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-971:TMPRSS2_c.18+3244:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004044	NA	0	16	10	18
P-0052721-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27065062	27100359	Intron of ARID1A(+):6Kb after exon 4	Exon 17 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.1920+5779_c.4071inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	35297	NA	0	34	10	34
P-0052721-T01-IM6	SOMATIC	FAT1	CACNA2D3	4	3	187628730	54186441	Exon 2 of FAT1(-)	Intron of CACNA2D3(+):29Kb after exon 2	GRCh37	TRANSLOCATION	FAT1 (NM_005245) - CACNA2D3 (NM_018398) rearrangement: t(3;4)(p21.1;q35.2)(chr3:g.54186441::chr4:g.187628730)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAT1:CACNA2D3}	0	NA	0	5	10	11
P-0009432-T03-IM6	SOMATIC	DOT1L	DOT1L	19	11	2208868	79148763	Intron of DOT1L(+):65bp before exon 12	5-UTR of TENM4(-):780Kb before coding start	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(11;19)(q14.1;p13.3)(chr11:g.79148763::chr19:g.2208868)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TENM4:DOT1L}	0	NA	0	124	10	144
P-0009432-T03-IM6	SOMATIC	PTPRS	PTPRS	19	19	3987676	5215785	Promoter of EEF2(-):12Kb from tx start	Intron of PTPRS(-):179bp before exon 27	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.4097-179:PTPRS_chr19:g.3987676inv	PRECISE		MANUAL_OK	3to3	-	1228109	NA	0	22	10	22
P-0010475-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27036040	27099045	Intron of ARID1A(+):12Kb after exon 1	Exon 13 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+12009_c.3461del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63005	NA	0	94	10	97
P-0014640-T03-IM6	SOMATIC	FAT1	FAT1	16	4	84263299	187630431	Intron of KCNG4(-):7Kb before exon 3	Exon 2 of FAT1(-)	GRCh37	TRANSLOCATION	FAT1 (NM_005245) rearrangement: t(4;16)(q35.2;q24.1)(chr4:g.187630431::chr16:g.84263299)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	32	10	46
P-0014640-T03-IM6	SOMATIC	FAT1	FAT1	4	1	187630550	103194061	Exon 2 of FAT1(-)	IGR: 148Kb before COL11A1(-)	GRCh37	TRANSLOCATION	FAT1 (NM_005245) rearrangement: t(1;4)(p21.1;q35.2)(chr1:g.103194061::chr4:g.187630550)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	37	10	51
P-0052142-T02-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11973178	12060008	Intron of MAP2K4(+):11Kb before exon 3	IGR: 75Kb before MIR744(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.219-11495:MAP2K4_chr17:g.12060008del	PRECISE		MANUAL_OK	3to5	-	86830	NA	1	112	10	121
P-0052608-T02-IM6	SOMATIC	NKX3	NKX3-1	8	8	23538244	23539120	3-UTR of NKX3-1(-):489bp after coding stop	Exon 2 of NKX3-1(-)	GRCh37	DELETION	NKX3-1 (NM_006167) rearrangement: c.319:NKX3-1_chr8:g.23538244del	PRECISE		MANUAL_OK	3to5	-	876	NA	0	18	10	18
P-0052686-T01-IM6	SOMATIC	RAD51D	RAD51D	17	3	33445448	1971582	Intron of RAD51D(-):681bp after exon 2	IGR: 169Kb before CNTN4(+)	GRCh37	TRANSLOCATION	RAD51D (NM_133629) rearrangement: t(3;17)(p26.3;q12)(chr3:g.1971582::chr17:g.33445448)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	21	10	24
P-0052688-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40104594	42870382	IGR: 6Kb before LINC00114(-)	Intron of TMPRSS2(-):266bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-266:TMPRSS2_chr21:g.40104594del	PRECISE		MANUAL_OK	3to5	-	2765788	NA	0	55	10	64
P-0052705-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	6110843	8074090	Intron of KCNAB2(+):9Kb after exon 3	Exon 4 of ERRFI1(-)	GRCh37	INVERSION	ERRFI1 (NM_018948) rearrangement: c.569:ERRFI1_chr1:g.6110843inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KCNAB2:ERRFI1}	1963247	NA	0	150	10	1212
P-0052707-T01-IM6	SOMATIC	IL7R	IL7R	5	5	28547960	35876376	IGR: 379Kb before LSP1P3(+)	Exon 8 of IL7R(+)	GRCh37	INVERSION	IL7R (NM_002185) rearrangement: c.1168:IL7R_chr5:g.28547960inv	PRECISE		MANUAL_OK	5to5	-	7328416	NA	0	11	10	13
P-0029239-T04-IM6	SOMATIC	CTCF	CTCF	16	16	67644920	68049929	Exon 3 of CTCF(+)	Promoter of LOC100131303(-):3Kb from tx start	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.185:CTCF_chr16:g.68049929dup	PRECISE		MANUAL_OK	5to3	-	405009	NA	0	37	10	39
P-0029239-T04-IM6	SOMATIC	AKT2	AKT2	19	19	40762834	43496167	Exon 3 of AKT2(-)	IGR: 16Kb before PSG11(-)	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.174:AKT2_chr19:g.43496167inv	IMPPRECISE		MANUAL_OK	5to5	-	2733333	NA	0	40	0	55
P-0042807-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55187899	55223158	Intron of EGFR(+):22Kb before exon 2	Intron of EGFR(+):364bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-22080_c.890-365del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	35259	NA	0	117	10	126
P-0042807-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55241126	55269418	Intron of EGFR(+):309bp after exon 17	Intron of EGFR(+):9bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+309_c.3115-10dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28292	NA	0	89	10	215
P-0052008-T02-IM6	SOMATIC	KEAP1	KEAP1	19	19	10602402	10614981	Exon 3 of KEAP1(-)	Promoter of KEAP1(-):18Kb from tx start	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1176:KEAP1_chr19:g.10614981del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12579	NA	0	111	10	319
P-0052564-T01-IM6	SOMATIC	JAK1	JAK1	1	1	54437720	65332772	IGR: 26Kb before LRRC42(+)	Exon 7 of JAK1(-)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.767:JAK1_chr1:g.54437720del	PRECISE		MANUAL_OK	3to5	-	10895052	NA	1	31	10	30
P-0052564-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62321977	62324733	Intron of RTEL1(+):180bp before exon 27	Intron of RTEL1(+):97bp after exon 30	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.2486-181_c.3064+97inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2756	NA	0	11	10	11
P-0052564-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39911428	39924763	Exon 15 of BCOR(-)	Intron of BCOR(-):911bp before exon 7	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.3239-911_c.5202del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13335	NA	0	5	8	5
P-0052787-T01-IM6	SOMATIC	ETV6	SGOL2	12	2	12028802	201410903	Intron of ETV6(+):6Kb after exon 5	Intron of SGOL2(+):4Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - SGOL2 (NM_152524) rearrangement: t(2;12)(q33.1;p13.2)(chr2:g.201410903::chr12:g.12028802)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ETV6:SGOL2}	0	NA	0	193	10	244
P-0052792-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63410899	63412500	Exon 2 of AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.667_c.2268del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1601	NA	0	46	10	101
P-0052793-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	14	15272118	25392430	Exon 33 of NOTCH3(-)	Intron of STXBP6(-):51Kb after exon 2	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(14;19)(q12;p13.12)(chr14:g.25392430::chr19:g.15272118)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	38	0	52
P-0052794-T01-IM6	SOMATIC	FGFR2	BAIAP2L1	10	7	123240813	98001949	Intron of FGFR2(-):1Kb before exon 18	Intron of BAIAP2L1(-):10Kb before exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - BAIAP2L1 (NM_018842) fusion: t(7;10)(q22.1;q26.13)(chr7:g.98001949::chr10:g.123240813)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:BAIAP2L1}	0	NA	0	39	10	43
P-0052797-T01-IM6	SOMATIC	CREBBP	TRAP1	16	16	3719112	3778028	Intron of TRAP1(-):3Kb after exon 10	Exon 31 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.7020:CREBBP_c.1235+2611:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:TRAP1}	58916	NA	0	10	10	10
P-0052797-T01-IM6	SOMATIC	NOTCH2	NOTCH2	6	1	52406542	120510242	Intron of TRAM2(-):6Kb before exon 2	Exon 8 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;p12.2)(chr1:g.120510242::chr6:g.52406542)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	5	9	6
P-0052799-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	83672432	87481270	IGR: 526Kb before TLE1(-)	Intron of NTRK2(+):887bp before exon 16	GRCh37	INVERSION	NTRK2 (NM_006180) rearrangement: c.1445-888:NTRK2_chr9:g.83672432inv	PRECISE		MANUAL_OK	3to3	-	3808838	NA	0	39	10	37
P-0052799-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87481302	137343067	Intron of NTRK2(+):855bp before exon 16	IGR: 45Kb before RXRA(+)	GRCh37	INVERSION	NTRK2 (NM_006180) rearrangement: c.1445-856:NTRK2_chr9:g.137343067inv	PRECISE		MANUAL_OK	5to5	-	49861765	NA	0	36	10	44
P-0052802-T01-IM6	SOMATIC	TNFAIP3	TNFAIP3	6	6	135837820	138192499	5-UTR of LINC00271(+):174Kb before coding start	Exon 2 of TNFAIP3(+)	GRCh37	INVERSION	TNFAIP3 (NM_006290) rearrangement: c.135:TNFAIP3_chr6:g.135837820inv	PRECISE		MANUAL_OK	5to5	-	2354679	NA	0	19	10	21
P-0052879-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36206637	36240113	Intron of RUNX1(-):69bp after exon 7	Intron of RUNX1(-):8Kb before exon 6	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.509-8238_c.805+70dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	33476	NA	0	5	0	5
P-0052879-T01-IM6	SOMATIC	FOXA1	FOXA1	X	14	133306025	38060608	Promoter of MIR106A(-):2Kb from tx start	Exon 2 of FOXA1(-)	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) rearrangement: t(14;X)(q21.1;q26.2)(chr14:g.38060608::chrX:g.133306025)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MIR106A:FOXA1}	0	NA	0	29	10	29
P-0052884-T01-IM6	SOMATIC	RARA	RARA	17	17	38510266	38511758	Intron of RARA(+):287bp before exon 7	Intron of RARA(+):85bp after exon 8	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.808-288_c.1171+85inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1492	NA	0	33	10	32
P-0052890-T01-IM6	SOMATIC	GCN1L1	MSI1	12	12	120593319	120806082	Intron of GCN1L1(-):76bp after exon 29	Intron of MSI1(-):6bp before exon 3	GRCh37	DUPLICATION	GCN1L1 (NM_006836) - MSI1 (NM_002442) rearrangement: c.3440+77:GCN1L1_c.101-6:MSI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GCN1L1:MSI1}	212763	NA	0	5	9	5
P-0052890-T01-IM6	SOMATIC	SYK	SYK	9	9	93622350	93624577	Intron of SYK(+):2Kb before exon 4	Exon 4 of SYK(+)	GRCh37	INVERSION	SYK (NM_003177) rearrangement: c.579-2138_c.668inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2227	NA	0	31	10	32
P-0052910-T01-IM6	SOMATIC	ASH2L	WHSC1L1	8	8	37966535	38205138	Intron of ASH2L(+):1Kb before exon 4	Exon 2 of WHSC1L1(-)	GRCh37	INVERSION	ASH2L (NM_004674) - WHSC1L1 (NM_023034) rearrangement: c.402-1362:ASH2L_c.552:WHSC1L1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASH2L:WHSC1L1}	238603	NA	0	4	8	4
P-0052917-T01-IM6	SOMATIC	CALR	CALR	19	19	13050383	51297482	Exon 3 of CALR(+)	Intron of ACPT(+):231bp before exon 9	GRCh37	INVERSION	CALR (NM_004343) rearrangement: c.335:CALR_chr19:g.51297482inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	38247099	NA	0	244	10	239
P-0052921-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44966823	44972921	Intron of KDM6A(+):42bp after exon 27	Promoter of KDM6A(+):241Kb from tx start	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.4005+42:KDM6A_chrX:g.44972921del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	6098	NA	0	29	10	31
P-0052922-T01-IM6	SOMATIC	KLF4	KLF4	X	9	41225176	110249379	Promoter of DDX3X(+):33Kb from tx start	Exon 4 of KLF4(-)	GRCh37	TRANSLOCATION	KLF4 (NM_004235) rearrangement: t(9;X)(q31.2;p11.4)(chr9:g.110249379::chrX:g.41225176)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	29	10	30
P-0052927-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246219003	246670313	Intron of SMYD3(-):126Kb before exon 6	Intron of SMYD3(-):42bp after exon 1	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.164+43_c.532-125764del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	451310	NA	0	18	10	19
P-0021648-T03-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43747699	43748430	Intron of TP53BP1(-):390bp after exon 12	Exon 12 of TP53BP1(-)	GRCh37	DELETION	TP53BP1 (NM_001141980) rearrangement: c.2376_c.2716+391del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	731	NA	0	34	10	40
P-0035161-T02-IM6	SOMATIC	CCHCR1	NOTCH4	6	6	31117440	32171746	Intron of CCHCR1(-):402bp after exon 8	Intron of NOTCH4(-):87bp before exon 20	GRCh37	DUPLICATION	CCHCR1 (NM_019052) - NOTCH4 (NM_004557) rearrangement: c.1095+403:CCHCR1_c.3119-87:NOTCH4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CCHCR1:NOTCH4}	1054306	NA	0	13	10	14
P-0052791-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11084200	11105641	5-UTR of SMARCA4(+):11Kb before coding start	Exon 9 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1557:SMARCA4_chr19:g.11084200del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21441	NA	0	6	10	6
P-0052869-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3780099	3882924	Intron of CREBBP(-):224bp before exon 31	Intron of CREBBP(-):17Kb after exon 2	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.798+17374_c.5173-224del	PRECISE		MANUAL_OK	3to5	Deletion of 28 exons : in frame	102825	NA	0	7	10	7
P-0052869-T01-IM6	SOMATIC	TP53	TP53	17	6	7574171	53161654	Intron of TP53(-):138bp before exon 10	5-UTR of ELOVL5(-):3Kb before coding start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(6;17)(p12.1;p13.1)(chr6:g.53161654::chr17:g.7574171)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ELOVL5:TP53}	0	NA	0	7	10	7
P-0052869-T01-IM6	SOMATIC	CALR	CALR	19	2	13050661	163419180	Intron of CALR(+):205bp before exon 4	Intron of KCNH7(-):26Kb before exon 3	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(2;19)(q24.2;p13.2)(chr2:g.163419180::chr19:g.13050661)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	8
P-0052874-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56491504	56492925	Intron of RNF43(-):1Kb after exon 2	Exon 2 of RNF43(-)	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.14_c.252+1183dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1421	NA	0	6	10	5
P-0052874-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39862298	42875273	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+7989:ERG_c.55+4604:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3012975	NA	0	17	10	17
P-0052875-T01-IM6	SOMATIC	PTEN	PTEN	12	10	70239379	89692692	IGR: 67Kb before RAB3IP(+)	Intron of PTEN(+):77bp before exon 5	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;12)(q23.31;q15)(chr10:g.89692692::chr12:g.70239379)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	32
P-0052875-T01-IM6	SOMATIC	WNK1	ATRX	X	12	76830013	934564	Intron of ATRX(-):190bp before exon 28	Intron of WNK1(+):2Kb before exon 3	GRCh37	TRANSLOCATION	WNK1 (NM_001184985) - ATRX (NM_000489) rearrangement: t(12;X)(p13.33;q21.1)(chr12:g.934564::chrX:g.76830013)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {WNK1:ATRX}	0	NA	0	18	10	18
P-0052875-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123210201	124337560	Exon 26 of STAG2(+)	IGR: 116Kb before LOC100129520(+)	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.2553:STAG2_chrX:g.124337560del	PRECISE		MANUAL_OK	3to5	-	1127359	NA	0	18	10	18
P-0053012-T01-IM6	SOMATIC	PDE1C	KMT2C	7	7	32019458	151842454	Intron of PDE1C(-):72Kb after exon 3	Intron of KMT2C(-):74bp before exon 54	GRCh37	DUPLICATION	PDE1C (NM_001191058) - KMT2C (NM_170606) rearrangement: c.309-98985:PDE1C_c.14032-74:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PDE1C:KMT2C}	119822996	NA	0	22	10	22
P-0053036-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21917491	21971063	IGR: 50Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.338:CDKN2A_chr9:g.21917491del	PRECISE		MANUAL_OK	3to5	-	53572	NA	0	66	10	70
P-0053040-T01-IM6	SOMATIC	GAB2	CDKN2B	11	9	78068634	22006184	Intron of GAB2(-):60Kb after exon 1	Exon 2 of CDKN2B(-)	GRCh37	TRANSLOCATION	GAB2 (NM_080491) - CDKN2B (NM_004936) rearrangement: t(9;11)(p21.3;q14.1)(chr9:g.22006184::chr11:g.78068634)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GAB2:CDKN2B}	0	NA	0	14	10	21
P-0053040-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55150491	55151959	Intron of PDGFRA(+):1Kb before exon 17	Intron of PDGFRA(+):48bp before exon 18	GRCh37	INVERSION	PDGFRA (NM_006206) rearrangement: c.2324-1047_c.2440-49inv	IMPPRECISE		MANUAL_OK	5to5	-	1468	NA	0	10	0	10
P-0043526-T03-IM6	SOMATIC	EWSR1	FLI1	22	11	29684397	128660704	Intron of EWSR1(+):197bp before exon 9	Intron of FLI1(+):9Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128660704::chr22:g.29684397)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	22	10	19
P-0052213-T02-IM6	SOMATIC	ALK	ALK	2	2	29450137	30141468	Intron of ALK(-):197bp before exon 18	Intron of ALK(-):1Kb after exon 1	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.667+1391_c.2915-197del	PRECISE		MANUAL_OK	3to5	Deletion of 16 exons : in frame	691331	NA	0	241	10	271
P-0052213-T02-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	106313584	185161212	IGR: 515Kb before LINC00882(-)	Intron of MAP3K13(+):20bp before exon 4	GRCh37	INVERSION	MAP3K13 (NM_004721) rearrangement: c.660-21:MAP3K13_chr3:g.106313584inv	PRECISE		MANUAL_OK	5to5	-	78847628	NA	0	44	10	53
P-0052838-T01-IM6	SOMATIC	EWSR1	EWSR1	22	12	29683995	57916051	Intron of EWSR1(+):599bp before exon 9	Promoter of DDIT3(-):6Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) fusion: t(12;22)(q13.3;q12.2)(chr12:g.57916051::chr22:g.29683995)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:DDIT3}	0	NA	0	37	10	37
P-0052839-T01-IM6	SOMATIC	GNAS	GNAS	20	20	57415395	57467185	Exon 1 of GNAS(+)	Intron of GNAS(+):265bp after exon 1	GRCh37	DELETION	GNAS (NM_000516) rearrangement: c.139+265:GNAS_chr20:g.57415395del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	51790	NA	0	3	10	3
P-0052852-T01-IM6	SOMATIC	NF2	NF2	22	22	30061061	30072268	Intron of NF2(+):8bp after exon 9	Intron of NF2(+):1Kb after exon 13	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.885+8_c.1446+1338del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	11207	NA	0	39	0	61
P-0028909-T03-IM6	SOMATIC	FAT1	FAT1	4	4	187546329	187549476	Intron of FAT1(-):3Kb after exon 9	Exon 9 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.4642_c.4810+2979del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3147	NA	0	14	10	27
P-0050682-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971431	22134055	Intron of CDKN2A(-):224bp before exon 2	IGR: 131Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-224:CDKN2A_chr9:g.22134055del	PRECISE		MANUAL_OK	3to5	-	162624	NA	0	15	10	15
P-0053010-T01-IM6	SOMATIC	RB1	RB1	13	5	48954088	8598697	Intron of RB1(+):100bp before exon 15	IGR: 138Kb before MIR4458(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(5;13)(p15.31;q14.2)(chr5:g.8598697::chr13:g.48954088)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	20
P-0053044-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11135242	12559044	Intron of SMARCA4(+):128bp after exon 21	IGR: 13Kb before ZNF709(-)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3081+128:SMARCA4_chr19:g.12559044del	PRECISE		MANUAL_OK	3to5	-	1423802	NA	0	11	10	11
P-0053044-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	1485281	32163489	IGR: 95Kb before MIR6720(-)	Exon 30 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.5737:NOTCH4_chr6:g.1485281inv	PRECISE		MANUAL_OK	5to5	-	30678208	NA	0	42	10	43
P-0053046-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39922280	42871329	Intron of ERG(-):25Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1213:TMPRSS2_c.39+25306:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2949049	NA	0	16	0	16
P-0053047-T01-IM6	SOMATIC	MYC	MYC	10	8	74060745	128750940	IGR: 27Kb before DDIT4(+)	Exon 2 of MYC(+)	GRCh37	TRANSLOCATION	MYC (NM_002467) rearrangement: t(8;10)(q24.21;q22.1)(chr8:g.128750940::chr10:g.74060745)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	8
P-0053050-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	43705812	46268861	3-UTR of STK4(+):111Kb after coding stop	Intron of NCOA3(+):66bp after exon 16	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.3080+66:NCOA3_chr20:g.43705812inv	PRECISE		MANUAL_OK	3to3	-	2563049	NA	0	24	10	24
P-0053061-T01-IM6	SOMATIC	SUFU	SUFU	10	10	103742800	104268884	Intron of C10orf76(-):8Kb after exon 19	Intron of SUFU(+):41bp before exon 2	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.183-42:SUFU_chr10:g.103742800del	PRECISE		MANUAL_OK	3to5	-	526084	NA	0	7	10	7
P-0053067-T01-IM6	SOMATIC	ERBB3	ERBB3	16	12	15187348	56488225	Intron of PDXDC1(+):45Kb before exon 17	Exon 15 of ERBB3(+)	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(12;16)(q13.2;p13.11)(chr12:g.56488225::chr16:g.15187348)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PDXDC1:ERBB3}	0	NA	0	78	10	128
P-0053110-T01-IM6	SOMATIC	PARVB	TCF3	22	19	44424579	1646498	Intron of PARVB(+):4Kb after exon 1	Intron of TCF3(-):72bp before exon 2	GRCh37	TRANSLOCATION	PARVB (NM_013327) - TCF3 (NM_001136139) rearrangement: t(19;22)(p13.3;q13.31)(chr19:g.1646498::chr22:g.44424579)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PARVB:TCF3}	0	NA	0	13	0	13
P-0026513-T02-IM6	SOMATIC	PDPK1	PDPK1	16	16	2645795	11661408	Exon 12 of PDPK1(+)	3-UTR of LITAF(-):20Kb after coding stop	GRCh37	DELETION	PDPK1 (NM_002613) rearrangement: c.1345:PDPK1_chr16:g.11661408del	PRECISE		MANUAL_OK	3to5	-	9015613	NA	0	45	10	51
P-0053114-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89818346	89866001	Intron of FANCA(-):199bp after exon 31	Intron of FANCA(-):11bp after exon 9	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.826+12_c.3066+200del	PRECISE		MANUAL_OK	3to5	Deletion of 22 exons : out of frame	47655	NA	0	10	10	13
P-0053114-T01-IM6	SOMATIC	DNAJB1	DNAJB1	19	19	14629100	14651972	Exon 1 of DNAJB1(-)	Intron of TECR(+):11Kb after exon 1	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: c.62:DNAJB1_chr19:g.14651972del	PRECISE		MANUAL_OK	3to5	-	22872	NA	0	16	10	29
P-0053114-T01-IM6	SOMATIC	SLC28A3 rearrangement	SLC28A3 rearrangement	9	9	87082240	87285629	IGR: 191Kb before SLC28A3(-)	5-UTR of NTRK2(+):34bp before coding start	GRCh37	DELETION	SLC28A3 rearrangement:chr9:g.87082240:NTRK2_chr9:g.87285629	PRECISE		MANUAL_OK	3to5	-	203389	NA	0	9	10	11
P-0053124-T01-IM6	SOMATIC	IKBKE	RABGAP1L	1	1	174428263	206666746	Intron of RABGAP1L(+):65Kb after exon 13	Intron of IKBKE(+):35bp after exon 20	GRCh37	DUPLICATION	IKBKE (NM_014002) - RABGAP1L (NM_014857) rearrangement: c.2045+35:IKBKE_c.1710+64980:RABGAP1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {IKBKE:RABGAP1L}	32238483	NA	0	32	10	33
P-0053128-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36216220	58830754	Exon 11 of KMT2B(+)	IGR: 8Kb before ZSCAN22(+)	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.3628:KMT2B_chr19:g.58830754del	PRECISE		MANUAL_OK	3to5	-	22614534	NA	0	7	10	7
P-0053130-T01-IM6	SOMATIC	CREBBP	CREBBP	16	12	3808896	69616473	Exon 17 of CREBBP(-)	IGR: 17Kb before CPSF6(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(12;16)(q15;p13.3)(chr12:g.69616473::chr16:g.3808896)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	42	10	54
P-0053131-T01-IM6	SOMATIC	DNMT3B	MYH7B	20	20	31374358	33571539	Exon 5 of DNMT3B(+)	Intron of MYH7B(+):955bp before exon 11	GRCh37	DELETION	DNMT3B (NM_006892) - MYH7B (NM_020884) rearrangement: c.357:DNMT3B_c.751-956:MYH7Bdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNMT3B:MYH7B}	2197181	NA	0	15	0	31
P-0019667-T02-IM6	SOMATIC	RTEL1	RTEL1	20	20	62311122	62316778	Intron of RTEL1(+):79bp before exon 13	Intron of RTEL1(+):97bp before exon 15	GRCh37	DUPLICATION	RTEL1 (NM_032957) rearrangement: c.1110-80_c.1264-98dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	5656	NA	0	65	10	65
P-0034781-T03-IM6	SOMATIC	GRIPAP1	RET	X	10	48831008	43611853	Intron of GRIPAP1(-):311bp before exon 26	Intron of RET(+):178bp before exon 12	GRCh37	TRANSLOCATION	GRIPAP1 (NM_020137) - RET (NM_020975) fusion: t(10;X)(q11.21;p11.23)(chr10:g.43611853::chrX:g.48831008)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {GRIPAP1:RET}	0	NA	0	8	10	9
P-0035085-T03-IM6	SOMATIC	EML4	ALK	2	2	29447079	42499232	Intron of ALK(-):685bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+7361:EML4_c.3173-685:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052153	NA	0	16	10	19
P-0052861-T02-IM6	SOMATIC	KIF5B	RET	10	10	32311205	43610260	Intron of KIF5B(-):20bp before exon 17	Intron of RET(+):76bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-20:KIF5B_c.2136+76:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11299055	NA	0	44	10	48
P-0052861-T02-IM6	SOMATIC	INSR	INSR	19	19	7119580	7200847	Exon 21 of INSR(-)	Intron of INSR(-):16Kb before exon 3	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.653-16199_c.3674inv	PRECISE		MANUAL_OK	3to3	-	81267	NA	0	32	10	32
P-0052969-T01-IM6	SOMATIC	SETD2	SMARCC1	3	3	47147353	47723401	Intron of SETD2(-):133bp after exon 6	Intron of SMARCC1(-):1Kb before exon 15	GRCh37	DUPLICATION	SETD2 (NM_014159) - SMARCC1 (NM_003074) rearrangement: c.4839+134:SETD2_c.1386-1403:SMARCC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SETD2:SMARCC1}	576048	NA	0	38	10	39
P-0052970-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39842017	42873941	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-3825:TMPRSS2_c.19-24473:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3031924	NA	0	103	10	107
P-0052970-T01-IM6	SOMATIC	BAP1	BAP1	21	3	41393215	52440189	Intron of DSCAM(-):8Kb before exon 33	Intron of BAP1(-):79bp after exon 9	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;21)(p21.1;q22.2)(chr3:g.52440189::chr21:g.41393215)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	50	0	55
P-0052972-T01-IM6	SOMATIC	APC	APC	5	1	112162850	114220342	Exon 12 of APC(+)	Intron of MAGI3(+):3Kb before exon 20	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(1;5)(p13.2;q22.2)(chr1:g.114220342::chr5:g.112162850)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	15
P-0052973-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37883403	37884554	Intron of ERBB2(+):144bp before exon 26	3-UTR of ERBB2(+):28Kb after coding stop	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3160-145:ERBB2_chr17:g.37884554del	PRECISE		MANUAL_OK	3to5	-	1151	NA	0	11	10	11
P-0052974-T01-IM6	SOMATIC	PALB2	PALB2	16	16	23646662	23652514	Exon 4 of PALB2(-)	5-UTR of PALB2(-):38Kb before coding start	GRCh37	INVERSION	PALB2 (NM_024675) rearrangement: c.1205:PALB2_chr16:g.23652514inv	PRECISE		MANUAL_OK	3to3	-	5852	NA	0	6	10	6
P-0052981-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18975776	18976904	Intron of UPF1(+):321bp before exon 21	Exon 23 of UPF1(+)	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: c.2858-322_c.3289del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1128	NA	0	30	10	33
P-0052982-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16259151	27252813	Exon 11 of SPEN(+)	Intron of NUDC(+):2Kb after exon 2	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.6416:SPEN_chr1:g.27252813inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	10993662	NA	0	94	10	94
P-0052983-T01-IM6	SOMATIC	HIST1H3D	HIST1H3D	11	6	89310110	26199776	5-UTR of NOX4(-):250Kb before coding start	Promoter of HIST1H3D(-):3Kb from tx start	GRCh37	TRANSLOCATION	HIST1H3D (NM_003530) rearrangement: t(6;11)(p22.2;q14.3)(chr6:g.26199776::chr11:g.89310110)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {HIST1H3D:NOX4}	0	NA	0	8	10	8
P-0052983-T01-IM6	SOMATIC	MYC	MYC	8	8	128753218	128792928	3-UTR of MYC(+):4Kb after coding stop	IGR: 15Kb before MIR1204(+)	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.*14_g.128792928del	PRECISE		MANUAL_OK	3to5	-	39710	NA	0	6	6	6
P-0052992-T01-IM6	SOMATIC	IKBKE	RBBP5	1	1	205081764	206648412	Intron of RBBP5(-):2Kb after exon 3	Intron of IKBKE(+):75bp after exon 5	GRCh37	INVERSION	IKBKE (NM_014002) - RBBP5 (NM_005057) rearrangement: c.358+75:IKBKE_c.218+2153:RBBP5inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {IKBKE:RBBP5}	1566648	NA	0	59	10	59
P-0052993-T01-IM6	SOMATIC	BRCA2	BRCA2	13	3	32929621	156770639	Intron of BRCA2(+):196bp after exon 14	IGR: 29Kb before LINC00880(-)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(3;13)(q25.31;q13.1)(chr3:g.156770639::chr13:g.32929621)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	18
P-0052993-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21965802	21968519	Promoter of CDKN2A(-):2Kb from tx start	Intron of CDKN2A(-):278bp before exon 3	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-278:CDKN2A_chr9:g.21965802del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2717	NA	0	10	10	10
P-0052994-T01-IM6	SOMATIC	FAM186A	NAB2	12	12	50772873	57488361	Intron of FAM186A(-):16Kb before exon 2	Intron of NAB2(+):33bp before exon 7	GRCh37	INVERSION	FAM186A (NM_001145475) - NAB2 (NM_005967) rearrangement: c.193-15726:FAM186A_c.1469-34:NAB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FAM186A:NAB2}	6715488	NA	0	18	10	26
P-0052995-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191912	55222444	Intron of EGFR(+):18Kb before exon 2	Intron of EGFR(+):599bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-18067_c.889+599del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	30532	NA	0	35	10	292
P-0052995-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268584	55269605	Intron of EGFR(+):296bp before exon 25	Intron of EGFR(+):130bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-297_c.3162+130del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1021	NA	0	70	10	78
P-0052998-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	114339212	151853140	IGR: 46Kb before MIR3666(+)	Exon 46 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11815:KMT2C_chr7:g.114339212del	PRECISE		MANUAL_OK	3to5	-	37513928	NA	0	7	10	8
P-0052999-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39862239	42872729	Intron of ERG(-):8Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2613:TMPRSS2_c.18+8048:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3010490	NA	0	43	10	43
P-0053002-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42836202	42866514	Promoter of TMPRSS2(-):275bp from tx start	Intron of TMPRSS2(-):9bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-9:TMPRSS2_chr21:g.42836202del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	30312	NA	0	17	10	18
P-0053031-T01-IM6	SOMATIC	BRCA1	VIPR2	17	7	41223016	158866903	Exon 15 of BRCA1(-)	Intron of VIPR2(-):16Kb before exon 5	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) - VIPR2 (NM_003382) rearrangement: t(7;17)(q36.3;q21.31)(chr7:g.158866903::chr17:g.41223016)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRCA1:VIPR2}	0	NA	0	21	10	21
P-0035831-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11123695	11151009	Exon 16 of SMARCA4(+)	Intron of SMARCA4(+):973bp before exon 30	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2345_c.4171-974del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27314	NA	0	39	10	76
P-0053168-T01-IM6	SOMATIC	STAT3	STAT3	17	17	27103150	40485936	5-UTR of FAM222B(-):18Kb before coding start	Exon 9 of STAT3(-)	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.929:STAT3_chr17:g.27103150del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAT3:FAM222B}	13382786	NA	0	32	10	41
P-0053170-T01-IM6	SOMATIC	PLCG2	LIMK2	22	16	31625396	81946475	Intron of LIMK2(+):4Kb after exon 2	Intron of PLCG2(+):154bp after exon 19	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) - LIMK2 (NM_005569) rearrangement: t(16;22)(q23.3;q12.2)(chr16:g.81946475::chr22:g.31625396)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PLCG2:LIMK2}	0	NA	0	26	10	27
P-0053172-T01-IM6	SOMATIC	NF1	NF1	17	17	29552243	29559306	Exon 17 of NF1(+)	Intron of NF1(+):99bp after exon 25	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1976_c.3314+99dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7063	NA	0	26	10	32
P-0053172-T01-IM6	SOMATIC	FAT1	FAT1	21	4	32199147	187510293	Promoter of KRTAP7-1(-):2Kb from tx start	Exon 27 of FAT1(-)	GRCh37	TRANSLOCATION	FAT1 (NM_005245) rearrangement: t(4;21)(q35.2;q22.11)(chr4:g.187510293::chr21:g.32199147)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	38
P-0053173-T01-IM6	SOMATIC	NF1	NF1	17	17	29528512	29623982	Intron of NF1(+):9bp after exon 11	Intron of NF1(+):29Kb before exon 37	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.1260+9_c.4836-28856del	PRECISE		MANUAL_OK	3to5	Deletion of 25 exons : out of frame	95470	NA	0	122	10	126
P-0053173-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48575173	48635773	Exon 3 of SMAD4(+)	IGR: 65Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.367:SMAD4_chr18:g.48635773del	PRECISE		MANUAL_OK	3to5	-	60600	NA	0	88	10	89
P-0053173-T01-IM6	SOMATIC	PRPF6	RTEL1	20	20	62321573	62623242	Intron of RTEL1(+):10bp after exon 25	Intron of PRPF6(+):2Kb before exon 4	GRCh37	DUPLICATION	PRPF6 (NM_012469) - RTEL1 (NM_032957) rearrangement: c.360-1518:PRPF6_c.2337+10:RTEL1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PRPF6:RTEL1}	301669	NA	0	70	10	72
P-0053175-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312246	43611162	Intron of KIF5B(-):282bp before exon 16	Intron of RET(+):869bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-282:KIF5B_c.2137-870:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298916	NA	0	41	10	56
P-0053185-T01-IM6	SOMATIC	STAT5A	STAT5A	17	17	40459711	40461259	Exon 16 of STAT5A(+)	Intron of STAT5A(+):135bp before exon 19	GRCh37	DELETION	STAT5A (NM_003152) rearrangement: c.1876_c.2115-136del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1548	NA	0	16	10	17
P-0053316-T01-IM6	SOMATIC	CD79B	CD79B	21	17	26466834	62009518	IGR: 254Kb before LOC339622(+)	Intron of CD79B(-):36bp after exon 1	GRCh37	TRANSLOCATION	CD79B (NM_001039933) rearrangement: t(17;21)(q23.3;q21.2)(chr17:g.62009518::chr21:g.26466834)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	26	10	27
P-0052787-T03-IM6	SOMATIC	ETV6	SGOL2	12	2	12028803	201410918	Intron of ETV6(+):6Kb after exon 5	Intron of SGOL2(+):4Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - SGOL2 (NM_152524) rearrangement: t(2;12)(q33.1;p13.2)(chr2:g.201410918::chr12:g.12028803)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ETV6:SGOL2}	0	NA	0	8	0	8
P-0052787-T03-IM6	SOMATIC	CYLD	CYLD	16	16	27115164	50785503	IGR: 37Kb before C16orf82(+)	Intron of CYLD(+):11bp before exon 4	GRCh37	INVERSION	CYLD (NM_001042355) rearrangement: c.505-12:CYLD_chr16:g.27115164inv	PRECISE		MANUAL_OK	5to5	-	23670339	NA	0	11	10	11
P-0052787-T03-IM6	SOMATIC	CDK12	CDK12	17	17	37627220	37631900	Exon 2 of CDK12(+)	Intron of CDK12(+):4Kb after exon 2	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.1135_c.1931+3884inv	PRECISE		MANUAL_OK	5to5	-	4680	NA	0	12	10	14
P-0053044-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11135242	12559044	Intron of SMARCA4(+):128bp after exon 21	IGR: 13Kb before ZNF709(-)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3081+128:SMARCA4_chr19:g.12559044del	PRECISE		MANUAL_OK	3to5	-	1423802	NA	0	47	10	50
P-0053044-T02-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	1485281	32163489	IGR: 95Kb before MIR6720(-)	Exon 30 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.5737:NOTCH4_chr6:g.1485281inv	PRECISE		MANUAL_OK	5to5	-	30678208	NA	0	97	10	139
P-0053240-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59857562	59885760	Intron of BRIP1(-):59bp after exon 13	Intron of BRIP1(-):67bp after exon 7	GRCh37	DUPLICATION	BRIP1 (NM_032043) rearrangement: c.918+68_c.1935+60dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	28198	NA	0	26	10	27
P-0053243-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55179662	55222416	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):571bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-30317_c.889+571del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	42754	NA	0	88	0	333
P-0053247-T01-IM6	SOMATIC	RAD51C	RAD51C	17	17	56772417	56776054	Exon 2 of RAD51C(+)	Intron of RAD51C(+):2Kb after exon 3	GRCh37	DUPLICATION	RAD51C (NM_058216) rearrangement: c.271_c.571+1834dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3637	NA	0	59	10	63
P-0053266-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25963724	26100961	3-UTR of ASXL2(-):1Kb after coding stop	Intron of ASXL2(-):73bp after exon 1	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.57+74:ASXL2_chr2:g.25963724del	PRECISE		MANUAL_OK	3to5	-	137237	NA	0	92	10	95
P-0053267-T01-IM6	SOMATIC	MET	MET	7	7	116412133	116417572	Intron of MET(+):90bp after exon 14	Intron of MET(+):49bp after exon 16	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.3028+90_c.3340+49dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	5439	NA	0	47	10	54
P-0053275-T01-IM6	SOMATIC	CPSF1	RECQL4	8	8	145626949	145738904	Exon 4 of CPSF1(-)	Intron of RECQL4(-):40bp before exon 14	GRCh37	DUPLICATION	CPSF1 (NM_013291) - RECQL4 (NM_004260) rearrangement: c.181:CPSF1_c.2201-40:RECQL4dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CPSF1:RECQL4}	111955	NA	0	59	0	60
P-0053276-T01-IM6	SOMATIC	PARP1	PARP1	17	1	74529593	226549627	Intron of CYGB(-):2Kb before exon 2	Intron of PARP1(-):42bp after exon 22	GRCh37	TRANSLOCATION	PARP1 (NM_001618) rearrangement: t(1;17)(q42.12;q25.1)(chr1:g.226549627::chr17:g.74529593)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	56	10	60
P-0015989-T05-IM6	SOMATIC	GLI1	GLI1	12	12	50885921	57859379	IGR: 13Kb before DIP2B(+)	Intron of GLI1(+):10bp before exon 6	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.535-11:GLI1_chr12:g.50885921inv	PRECISE		MANUAL_OK	5to5	-	6973458	NA	0	14	10	16
P-0015989-T05-IM6	SOMATIC	FMN1	NAB2	15	12	33270870	57487944	Intron of FMN1(-):9Kb before exon 4	Intron of NAB2(+):450bp before exon 7	GRCh37	TRANSLOCATION	FMN1 (NM_001103184) - NAB2 (NM_005967) rearrangement: t(12;15)(q13.3;q13.3)(chr12:g.57487944::chr15:g.33270870)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FMN1:NAB2}	0	NA	0	17	0	18
P-0028513-T02-IM6	SOMATIC	MALT1	MALT1	18	18	56363624	56805185	Exon 3 of MALT1(+)	Promoter of SEC11C(+):2Kb from tx start	GRCh37	DUPLICATION	MALT1 (NM_006785) rearrangement: c.403:MALT1_chr18:g.56805185dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC11C:MALT1}	441561	NA	0	65	10	66
P-0053307-T01-IM6	SOMATIC	CASP8	CASP8	10	2	69457520	202146612	Promoter of CTNNA3(-):2Mb from tx start	Intron of CASP8(+):3Kb before exon 8	GRCh37	TRANSLOCATION	CASP8 (NM_001080125) rearrangement: t(2;10)(q33.1;q21.3)(chr2:g.202146612::chr10:g.69457520)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	13	10	13
P-0053307-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	3	67202483	171466100	Exon 15 of RPS6KB2(+)	5-UTR of PLD1(-):145Kb before coding start	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) rearrangement: t(3;11)(q26.31;q13.2)(chr3:g.171466100::chr11:g.67202483)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	5
P-0044511-T03-IM6	SOMATIC	EP300	EP300	22	4	41545196	189258952	Intron of EP300(+):17bp after exon 13	IGR: 118Kb before LINC01060(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(4;22)(q35.2;q13.2)(chr4:g.189258952::chr22:g.41545196)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	5
P-0044511-T03-IM6	SOMATIC	BAP1	BAP1	3	3	52440674	52441235	Intron of BAP1(-):170bp after exon 8	Exon 7 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.535_c.659+171del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	561	NA	0	7	10	7
P-0044511-T03-IM6	SOMATIC	BAP1	BAP1	4	3	189260558	52441459	IGR: 116Kb before LINC01060(+)	Exon 6 of BAP1(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;4)(p21.1;q35.2)(chr3:g.52441459::chr4:g.189260558)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	14
P-0044938-T05-IM6	SOMATIC	NT5C1B	RDH14	2	2	18741053	29462719	Intron of NT5C1B-RDH14(-):4Kb before exon 11	Intron of ALK(-):23bp before exon 13	GRCh37	DUPLICATION	NT5C1B-RDH14 (NM_001199103) - ALK (NM_004304) fusion: c.1336-3979:NT5C1B-RDH14_c.2205-23:ALKdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NT5C1B-RDH14:ALK}	10721666	NA	0	16	10	16
P-0049375-T02-IM6	SOMATIC	EML4	ALK	2	2	29446732	42493037	Intron of ALK(-):338bp before exon 20	Intron of EML4(+):1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1166:EML4_c.3173-338:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046305	NA	0	51	10	51
P-0053068-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10277191	10420681	Intron of DNMT1(-):82bp after exon 10	Promoter of ZGLP1(-):5Kb from tx start	GRCh37	DUPLICATION	DNMT1 (NM_001379) rearrangement: c.843+83:DNMT1_chr19:g.10420681dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {DNMT1:ZGLP1}	143490	NA	0	57	10	57
P-0053075-T01-IM6	SOMATIC	E2F3	E2F3	6	6	20488626	20498691	Intron of E2F3(+):147bp after exon 6	IGR: 36Kb before CDKAL1(+)	GRCh37	DELETION	E2F3 (NM_001949) rearrangement: c.1135+147:E2F3_chr6:g.20498691del	PRECISE		MANUAL_OK	3to5	-	10065	NA	0	24	10	25
P-0053220-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	65377868	78923312	Intron of PITPNC1(+):4Kb after exon 1	Exon 28 of RPTOR(+)	GRCh37	INVERSION	RPTOR (NM_020761) rearrangement: c.3335:RPTOR_chr17:g.65377868inv	PRECISE		MANUAL_OK	5to5	-	13545444	NA	0	21	10	27
P-0053245-T02-IM6	SOMATIC	MDM2	MDM2	12	12	69229675	69234045	Exon 9 of MDM2(+)	3-UTR of MDM2(+):32Kb after coding stop	GRCh37	INVERSION	MDM2 (NM_002392) rearrangement: c.751:MDM2_chr12:g.69234045inv	PRECISE		MANUAL_OK	5to5	-	4370	NA	0	4	6	4
P-0053341-T01-IM6	SOMATIC	B2M	B2M	15	15	44983347	45007801	IGR: 20Kb before B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.248:B2M_chr15:g.44983347del	PRECISE		MANUAL_OK	3to5	-	24454	NA	0	37	10	37
P-0053343-T01-IM6	SOMATIC	MRE11A	MRE11A	11	11	94170357	99101479	Exon 17 of MRE11A(-)	5-UTR of CNTN5(+):325Kb before coding start	GRCh37	INVERSION	MRE11A (NM_005591) rearrangement: c.1912:MRE11A_chr11:g.99101479inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MRE11A:CNTN5}	4931122	NA	0	14	10	14
P-0053343-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186479665	186502236	IGR: 22Kb before EIF4A2(+)	Exon 2 of EIF4A2(+)	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.45:EIF4A2_chr3:g.186479665del	PRECISE		MANUAL_OK	3to5	-	22571	NA	0	11	10	13
P-0053370-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268961	56218081	Exon 25 of EGFR(+)	IGR: 36Kb before NUPR1L(-)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3027:EGFR_chr7:g.56218081del	PRECISE		MANUAL_OK	3to5	-	949120	NA	1	72	10	4699
P-0053373-T01-IM6	SOMATIC	PRAM1	STK11	19	19	1207117	8555980	Exon 1 of STK11(+)	Intron of PRAM1(-):3bp after exon 5	GRCh37	INVERSION	PRAM1 (NM_032152) - STK11 (NM_000455) rearrangement: c.1634+4:PRAM1_c.205:STK11inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PRAM1:STK11}	7348863	NA	0	41	10	42
P-0053383-T01-IM6	SOMATIC	TRAF3	ALK	14	2	103370282	29447688	Intron of TRAF3(+):516bp after exon 10	Intron of ALK(-):638bp after exon 19	GRCh37	TRANSLOCATION	TRAF3 (NM_003300) - ALK (NM_004304) fusion: t(2;14)(p23.2;q32.32)(chr2:g.29447688::chr14:g.103370282)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRAF3:ALK}	0	NA	0	55	10	55
P-0053398-T01-IM6	SOMATIC	NF2	NF2	22	22	30010172	30032773	Intron of NF2(+):10Kb after exon 1	Exon 2 of NF2(+)	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.114+10071_c.148del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22601	NA	0	6	9	6
P-0053402-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117663235	117665337	Intron of ROS1(-):327bp after exon 28	Exon 27 of ROS1(-)	GRCh37	DUPLICATION	ROS1 (NM_002944) rearrangement: c.4410_c.4669+328dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2102	NA	0	50	10	51
P-0053406-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39856865	42878668	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1209:TMPRSS2_c.18+13422:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3021803	NA	0	68	10	76
P-0053454-T01-IM6	SOMATIC	KMT2C	DNER	7	2	151945559	230572714	Exon 14 of KMT2C(-)	Intron of DNER(-):6Kb after exon 1	GRCh37	TRANSLOCATION	KMT2C (NM_170606) - DNER (NM_139072) rearrangement: t(2;7)(q36.3;q36.1)(chr2:g.230572714::chr7:g.151945559)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2C:DNER}	0	NA	0	34	10	39
P-0053458-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55109688	55223193	Intron of EGFR(+):23Kb after exon 1	Intron of EGFR(+):329bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+22630_c.890-330del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	113505	NA	0	750	10	836
P-0053529-T01-IM6	SOMATIC	CARM1	CARM1	19	17	11027448	77137490	Exon 8 of CARM1(+)	5-UTR of RBFOX3(-):51Kb before coding start	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(17;19)(q25.3;p13.2)(chr17:g.77137490::chr19:g.11027448)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RBFOX3:CARM1}	0	NA	0	11	10	19
P-0053529-T01-IM6	SOMATIC	ESR1	ESR1	6	2	152419963	189680035	Exon 9 of ESR1(+)	IGR: 82Kb before DIRC1(-)	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(2;6)(q32.2;q25.1)(chr2:g.189680035::chr6:g.152419963)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	72	10	76
P-0049305-T05-IM6	SOMATIC	ROS1	ROS1	6	6	117715402	134256989	Exon 10 of ROS1(-)	IGR: 16Kb before TBPL1(+)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.1087:ROS1_chr6:g.134256989del	PRECISE		MANUAL_OK	3to5	-	16541587	NA	0	10	10	10
P-0051958-T03-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30710417	30713439	Intron of TGFBR2(+):3Kb before exon 5	Exon 5 of TGFBR2(+)	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.530-2713_c.839del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3022	NA	0	36	10	50
P-0053065-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2103369	2110815	Exon 4 of TSC2(+)	Intron of TSC2(+):1bp after exon 11	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.252_c.1119+1dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7446	NA	0	56	10	57
P-0053239-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896065	42873661	Intron of ERG(-):52Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3545:TMPRSS2_c.39+51521:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2977596	NA	0	12	10	12
P-0053249-T01-IM6	SOMATIC	PGAP3	ERBB2	17	17	37839517	37879921	Intron of PGAP3(-):1Kb after exon 3	Intron of ERBB2(+):8bp after exon 18	GRCh37	INVERSION	PGAP3 (NM_033419) - ERBB2 (NM_004448) rearrangement: c.432+1333:PGAP3_c.2208+8:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PGAP3:ERBB2}	40404	NA	0	10	10	9
P-0053249-T01-IM6	SOMATIC	AXL	AXL	19	19	22709779	41743953	3-UTR of LOC101929124(-):972bp after coding stop	Exon 7 of AXL(+)	GRCh37	INVERSION	AXL (NM_021913) rearrangement: c.888:AXL_chr19:g.22709779inv	PRECISE		MANUAL_OK	5to5	-	19034174	NA	0	57	10	67
P-0053361-T01-IM6	SOMATIC	CNTNAP5	ERBB4	2	2	125153300	212426773	Intron of CNTNAP5(+):22Kb before exon 4	Exon 20 of ERBB4(-)	GRCh37	INVERSION	CNTNAP5 (NM_130773) - ERBB4 (NM_005235) rearrangement: c.382-21720:CNTNAP5_c.2342:ERBB4inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CNTNAP5:ERBB4}	87273473	NA	0	21	0	21
P-0053394-T01-IM6	SOMATIC	SYNE1	ESR1	6	6	152415462	152466948	Intron of ESR1(+):57bp before exon 8	Intron of SYNE1(-):258bp before exon 137	GRCh37	INVERSION	SYNE1 (NM_182961) - ESR1 (NM_001122740) rearrangement: c.24977-2048:SYNE1_c.1370-58:ESR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SYNE1:ESR1}	51486	NA	0	13	10	15
P-0053396-T01-IM6	SOMATIC	MET	MET	7	7	116411754	116418923	Intron of MET(+):46bp after exon 13	Exon 17 of MET(+)	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.2887+46_c.3434dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7169	NA	0	13	10	13
P-0053473-T01-IM6	SOMATIC	FAM46C	FAM46C	1	1	118166241	118167558	Exon 2 of FAM46C(+)	3-UTR of FAM46C(+):2Kb after coding stop	GRCh37	DELETION	FAM46C (NM_017709) rearrangement: c.751:FAM46C_chr1:g.118167558del	PRECISE		MANUAL_OK	3to5	-	1317	NA	0	14	10	14
P-0053473-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141595384	141624224	Exon 2 of AGO2(-)	Intron of AGO2(-):21Kb after exon 1	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.22+21360_c.49del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28840	NA	0	36	10	37
P-0053493-T01-IM6	SOMATIC	SGCG	FLT3	13	13	23835556	28599245	Intron of SGCG(+):11Kb after exon 4	Intron of FLT3(-):165bp before exon 18	GRCh37	INVERSION	SGCG (NM_000231) - FLT3 (NM_004119) rearrangement: c.385+10700:SGCG_c.2208-165:FLT3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SGCG:FLT3}	4763689	NA	0	10	10	10
P-0053495-T01-IM6	SOMATIC	CREBBP	TRAP1	16	16	3733472	3828634	Intron of TRAP1(-):3Kb after exon 3	Intron of CREBBP(-):66bp after exon 9	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.1941+67:CREBBP_c.471+2525:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CREBBP:TRAP1}	95162	NA	0	55	10	65
P-0041265-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56489009	56498022	Intron of ERBB3(+):31bp before exon 16	Promoter of ERBB3(+):24Kb from tx start	GRCh37	DUPLICATION	ERBB3 (NM_001982) rearrangement: c.1860-32:ERBB3_chr12:g.56498022dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	9013	NA	0	2	10	2
P-0042868-T02-IM6	SOMATIC	PTPRS	PTPRS	19	19	3619854	5231397	Intron of CACTIN(-):270bp after exon 4	Exon 14 of PTPRS(-)	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.2079:PTPRS_chr19:g.3619854inv	PRECISE		MANUAL_OK	3to3	-	1611543	NA	0	459	10	455
P-0045484-T03-IM6	SOMATIC	PIK3CB	PIK3CB	3	3	138456596	160442290	Exon 4 of PIK3CB(-)	IGR: 32Kb before PPM1L(+)	GRCh37	DELETION	PIK3CB (NM_006219) rearrangement: c.754:PIK3CB_chr3:g.160442290del	PRECISE		MANUAL_OK	3to5	-	21985694	NA	0	13	10	13
P-0053345-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37870616	37872157	Intron of ERBB2(+):922bp before exon 10	Exon 12 of ERBB2(+)	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.1149-923_c.1478inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1541	NA	0	11	10	10
P-0053524-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99324381	99460027	Intron of IGF1R(+):73Kb after exon 2	Exon 10 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.640+73045_c.2123dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	135646	NA	0	56	10	59
P-0053525-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39821701	42872712	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2596:TMPRSS2_c.19-4157:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3051011	NA	0	25	10	25
P-0053528-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156835686	156836955	Intron of NTRK1(+):1Kb before exon 4	Intron of NTRK1(+):185bp after exon 4	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.360-1016_c.428+185inv	PRECISE		MANUAL_OK	5to5	-	1269	NA	0	7	10	8
P-0053528-T01-IM6	SOMATIC	HIST1H3G	HIST1H3G	6	3	26271404	186537286	Exon 1 of HIST1H3G(-)	3-UTR of LOC102724699(-):6Kb after coding stop	GRCh37	TRANSLOCATION	HIST1H3G (NM_003534) rearrangement: t(3;6)(q27.3;p22.2)(chr3:g.186537286::chr6:g.26271404)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	13
P-0053530-T01-IM6	SOMATIC	RET	SLC4A4	10	4	43610439	72412310	Intron of RET(+):255bp after exon 11	Intron of SLC4A4(+):65bp after exon 19	GRCh37	TRANSLOCATION	RET (NM_020975) - SLC4A4 (NM_001134742) rearrangement: t(4;10)(q13.3;q11.21)(chr4:g.72412310::chr10:g.43610439)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RET:SLC4A4}	0	NA	0	37	10	38
P-0053545-T01-IM6	SOMATIC	GLI1	CPM	12	12	57859233	69264741	Intron of GLI1(+):156bp before exon 6	Intron of CPM(-):562bp before exon 5	GRCh37	INVERSION	GLI1 (NM_005269) - CPM (NM_001005502) rearrangement: c.535-157:GLI1_c.432-562:CPMinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {GLI1:CPM}	11405508	NA	0	213	10	251
P-0053547-T01-IM6	SOMATIC	ST7	MET	7	7	116339229	116781156	Exon 2 of MET(+)	Intron of ST7(+):3Kb after exon 9	GRCh37	DUPLICATION	ST7 (NM_021908) - MET (NM_000245) fusion: c.963+2570:ST7_c.91:METdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ST7:MET}	441927	NA	0	3	7	3
P-0053567-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	13133685	157522363	Intron of PHACTR1(+):27Kb before exon 6	Exon 18 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.4635:ARID1B_chr6:g.13133685inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	144388678	NA	0	21	10	23
P-0053571-T01-IM6	SOMATIC	MYC	MYC	8	8	128744608	128750799	3-UTR of CASC11(-):2Kb after coding stop	Exon 2 of MYC(+)	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.336:MYC_chr8:g.128744608del	PRECISE		MANUAL_OK	3to5	-	6191	NA	0	14	10	14
P-0000391-T03-IM6	SOMATIC	HGF	HGF	7	7	79229801	81339369	IGR: 147Kb before MAGI2-AS3(+)	Intron of HGF(-):93bp after exon 13	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.1541+94:HGF_chr7:g.79229801inv	IMPPRECISE		MANUAL_OK	5to5	-	2109568	NA	0	7	0	7
P-0004226-T04-IM6	SOMATIC	INPPL1	FCHSD2	11	11	71945806	72678691	Intron of INPPL1(+):147bp after exon 21	Intron of FCHSD2(-):16Kb after exon 8	GRCh37	INVERSION	INPPL1 (NM_001567) - FCHSD2 (NM_014824) rearrangement: c.2415+147:INPPL1_c.705+16442:FCHSD2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {INPPL1:FCHSD2}	732885	NA	0	28	10	28
P-0053627-T02-IM6	SOMATIC	TP53	TP53	17	9	7579839	5020902	Exon 2 of TP53(-)	5-UTR of JAK2(+):1Kb before coding start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(9;17)(p24.1;p13.1)(chr9:g.5020902::chr17:g.7579839)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {JAK2:TP53}	0	NA	0	195	0	195
P-0053643-T01-IM6	SOMATIC	FGFR3	PRX	19	4	40910502	1808850	Intron of PRX(-):733bp before exon 5	Exon 18 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) - PRX (NM_181882) fusion: t(4;19)(p16.3;q13.2)(chr4:g.1808850::chr19:g.40910502)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FGFR3:PRX}	0	NA	0	20	10	19
P-0053648-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115260523	115273153	3-UTR of CSDE1(-):266bp after coding stop	Exon 12 of CSDE1(-)	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.1305:CSDE1_chr1:g.115260523inv	PRECISE		MANUAL_OK	3to3	-	12630	NA	0	16	10	16
P-0053649-T01-IM6	SOMATIC	PHLDB3	CIC	19	19	42793134	44000598	Exon 7 of CIC(+)	Intron of PHLDB3(-):671bp after exon 6	GRCh37	INVERSION	PHLDB3 (NM_198850) - CIC (NM_015125) rearrangement: c.825+672:PHLDB3_c.1026:CICinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PHLDB3:CIC}	1207464	NA	0	115	10	156
P-0053678-T01-IM6	SOMATIC	NF2	NF2	22	22	30045921	30054220	Intron of NF2(+):5Kb before exon 5	Exon 7 of NF2(+)	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.448-4725_c.642inv	PRECISE		MANUAL_OK	5to5	-	8299	NA	0	49	10	64
P-0041149-T04-IM6	SOMATIC	EGFR	RAD51	15	7	40996189	55268799	Intron of RAD51(+):2Kb before exon 4	Intron of EGFR(+):81bp before exon 25	GRCh37	TRANSLOCATION	EGFR (NM_005228) - RAD51 (NM_002875) fusion: t(7;15)(p11.2;q15.1)(chr7:g.55268799::chr15:g.40996189)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EGFR:RAD51}	0	NA	0	253	10	282
P-0045112-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46285531	46289668	Intron of ARID2(+):31bp before exon 17	Intron of ARID2(+):2Kb after exon 20	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.4923-32_c.5363+2164dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	4137	NA	0	6	0	6
P-0053510-T01-IM6	SOMATIC	TP53	TP53	17	13	7573943	19795983	Exon 10 of TP53(-)	IGR: 40Kb before LOC101928697(+)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(13;17)(q12.11;p13.1)(chr13:g.19795983::chr17:g.7573943)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	5	10	20
P-0053554-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46521373	46538773	Intron of PIK3R3(-):93bp after exon 7	Intron of PIK3R3(-):4Kb after exon 3	GRCh37	DUPLICATION	PIK3R3 (NM_003629) rearrangement: c.314+4414_c.941+94dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	17400	NA	0	21	10	23
P-0053559-T01-IM6	SOMATIC	CHEK2	CHEK2	22	22	27909896	29089942	IGR: 234Kb before MN1(-)	Intron of CHEK2(-):77bp after exon 13	GRCh37	DELETION	CHEK2 (NM_007194) rearrangement: c.1461+78:CHEK2_chr22:g.27909896del	PRECISE		MANUAL_OK	3to5	-	1180046	NA	0	20	10	60
P-0053559-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151877213	153126519	Intron of KMT2C(-):2bp before exon 37	IGR: 30Kb before LINC01287(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.7150-2:KMT2C_chr7:g.153126519inv	PRECISE		MANUAL_OK	3to3	-	1249306	NA	0	11	10	11
P-0053562-T01-IM6	SOMATIC	TP53	TP53	17	17	7578687	12578079	Intron of TP53(-):133bp before exon 5	Intron of MYOCD(+):9Kb after exon 1	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.376-133:TP53_chr17:g.12578079del	PRECISE		MANUAL_OK	3to5	-	4999392	NA	0	7	10	7
P-0053582-T01-IM6	SOMATIC	SETD2	SMARCC1	3	3	47098554	47740540	Exon 15 of SETD2(-)	Intron of SMARCC1(-):2Kb after exon 11	GRCh37	DUPLICATION	SETD2 (NM_014159) - SMARCC1 (NM_003074) rearrangement: c.6720:SETD2_c.1165+2228:SMARCC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SETD2:SMARCC1}	641986	NA	0	77	10	77
P-0053584-T01-IM6	SOMATIC	BECN1	STAT3	17	17	40477014	40969262	Exon 16 of STAT3(-)	Intron of BECN1(-):976bp after exon 7	GRCh37	DELETION	BECN1 (NM_003766) - STAT3 (NM_139276) rearrangement: c.683+977:BECN1_c.1431:STAT3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BECN1:STAT3}	492248	NA	0	31	10	33
P-0053584-T01-IM6	SOMATIC	ZNF532	MALT1	18	18	56339025	56616474	Exon 1 of MALT1(+)	Intron of ZNF532(+):1Kb after exon 7	GRCh37	DUPLICATION	ZNF532 (NM_018181) - MALT1 (NM_006785) rearrangement: c.2868+1013:ZNF532_c.150:MALT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF532:MALT1}	277449	NA	0	19	10	20
P-0053584-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139382023	139412353	Promoter of C9orf163(+):4Kb from tx start	Exon 8 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1292:NOTCH1_chr9:g.139382023del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	30330	NA	0	10	10	10
P-0010079-T03-IM6	SOMATIC	CDK12	CDK12	17	17	30466708	37627526	Promoter of RHOT1(+):3Kb from tx start	Exon 2 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.1441:CDK12_chr17:g.30466708del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RHOT1:CDK12}	7160818	NA	0	5	0	5
P-0047455-T04-IM6	SOMATIC	TSC2	TSC2	16	16	2119045	2120555	Intron of TSC2(+):1Kb before exon 17	Exon 17 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1717-1412_c.1815del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1510	NA	0	9	10	10
P-0053278-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15356521	15383634	Intron of BRD4(-):948bp before exon 12	Exon 2 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.277_c.2159-948del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27113	NA	0	13	10	13
P-0053667-T01-IM6	SOMATIC	SMARCD2	CD79B	17	17	61915279	62009532	Intron of SMARCD2(-):294bp before exon 2	Intron of CD79B(-):22bp after exon 1	GRCh37	DUPLICATION	SMARCD2 (NM_001098426) - CD79B (NM_001039933) rearrangement: c.217-294:SMARCD2_c.67+23:CD79Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SMARCD2:CD79B}	94253	NA	0	3	7	3
P-0053704-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864944	42878585	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1292:TMPRSS2_c.18+5343:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013641	NA	0	12	10	12
P-0053732-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139405674	139431225	Exon 16 of NOTCH1(-)	Intron of NOTCH1(-):7Kb after exon 2	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.140+7251_c.2517del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25551	NA	0	39	10	41
P-0053736-T01-IM6	SOMATIC	EGFR	EGFR	7	7	53314839	55225406	IGR: 211Kb before POM121L12(+)	Exon 11 of EGFR(+)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.1258:EGFR_chr7:g.53314839inv	IMPPRECISE		MANUAL_OK	5to5	-	1910567	NA	0	6	0	6
P-0053739-T01-IM6	SOMATIC	RASGRP2	RELA	11	11	64498658	65429621	Intron of RASGRP2(-):992bp before exon 13	Intron of RELA(-):28bp after exon 2	GRCh37	DUPLICATION	RASGRP2 (NM_001098670) - RELA (NM_021975) rearrangement: c.1413-992:RASGRP2_c.34+29:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RASGRP2:RELA}	930963	NA	0	6	10	8
P-0053739-T01-IM6	SOMATIC	PRKAG2	KMT2C	7	7	151397793	152007332	Intron of PRKAG2(-):25Kb before exon 4	Intron of KMT2C(-):172bp before exon 6	GRCh37	DUPLICATION	PRKAG2 (NM_016203) - KMT2C (NM_170606) rearrangement: c.467-25070:PRKAG2_c.740-172:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PRKAG2:KMT2C}	609539	NA	0	13	10	13
P-0035107-T02-IM6	SOMATIC	BCL2	BCL2	18	18	60985480	61340025	Exon 2 of BCL2(-)	IGR: 18Kb before SERPINB3(-)	GRCh37	INVERSION	BCL2 (NM_000633) rearrangement: c.420:BCL2_chr18:g.61340025inv	PRECISE		MANUAL_OK	3to3	-	354545	NA	0	66	10	66
P-0051883-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968283	22119467	Intron of CDKN2A(-):42bp before exon 3	5-UTR of CDKN2B-AS1(+):2Kb before coding start	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-42:CDKN2A_chr9:g.22119467del	PRECISE		MANUAL_OK	3to5	-	151184	NA	0	48	10	49
P-0052297-T02-IM6	SOMATIC	EML4	ALK	2	2	29448255	42528220	Intron of ALK(-):71bp after exon 19	Intron of EML4(+):160bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-161:EML4_c.3172+72:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079965	NA	0	55	10	54
P-0053385-T02-IM6	SOMATIC	PBRM1	PBRM1	3	3	52663053	52710857	Intron of PBRM1(-):2bp before exon 13	Intron of PBRM1(-):2Kb after exon 3	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.236+1659_c.1302-2del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	47804	NA	0	40	10	41
P-0053586-T01-IM6	SOMATIC	NKX3	NKX3-1	8	8	20812344	23540026	IGR: 19Kb before LOC286114(+)	Intron of NKX3-1(-):90bp after exon 1	GRCh37	DELETION	NKX3-1 (NM_006167) rearrangement: c.286+91:NKX3-1_chr8:g.20812344del	PRECISE		MANUAL_OK	3to5	-	2727682	NA	0	4	5	4
P-0053702-T01-IM6	SOMATIC	NID1	KDM6A	X	1	44733151	236167132	Intron of KDM6A(+):18bp before exon 2	Intron of NID1(-):8Kb after exon 12	GRCh37	TRANSLOCATION	NID1 (NM_002508) - KDM6A (NM_021140) rearrangement: t(1;X)(q42.3;p11.3)(chr1:g.236167132::chrX:g.44733151)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NID1:KDM6A}	0	NA	0	5	10	5
P-0053704-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864944	42878585	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1292:TMPRSS2_c.18+5343:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3013641	NA	0	100	10	103
P-0053704-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	130616396	151873996	IGR: 10Kb before LINC-PINT(-)	Exon 38 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.8542:KMT2C_chr7:g.130616396inv	PRECISE		MANUAL_OK	3to3	-	21257600	NA	0	5	10	5
P-0053710-T01-IM6	SOMATIC	APC	APC	5	5	112155163	112170685	Intron of APC(+):122bp after exon 10	Exon 15 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1312+122_c.1781del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15522	NA	0	46	10	47
P-0053719-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16260845	16268246	Exon 11 of SPEN(+)	Promoter of SPEN(+):94Kb from tx start	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.8110:SPEN_chr1:g.16268246inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7401	NA	0	82	10	82
P-0053728-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38059618	38060848	3-UTR of FOXA1(-):951bp after coding stop	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1141:FOXA1_chr14:g.38059618del	PRECISE		MANUAL_OK	3to5	-	1230	NA	0	49	10	53
P-0053728-T01-IM6	SOMATIC	CDK12	CDK12	17	17	36536924	37687007	Intron of SOCS7(+):3Kb after exon 7	Exon 14 of CDK12(+)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3911:CDK12_chr17:g.36536924inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1150083	NA	0	68	10	68
P-0053728-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39833473	42869499	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):546bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+547:TMPRSS2_c.19-15929:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3036026	NA	0	97	10	99
P-0053729-T01-IM6	SOMATIC	SOS1	SOS1	2	2	39222277	39238396	Exon 20 of SOS1(-)	Intron of SOS1(-):552bp before exon 15	GRCh37	DELETION	SOS1 (NM_005633) rearrangement: c.2391-552_c.3333del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16119	NA	0	5	10	5
P-0053729-T01-IM6	SOMATIC	VEGFA	VEGFA	6	6	43739084	49431527	Intron of VEGFA(+):35bp after exon 1	5-UTR of CENPQ(+):6Kb before coding start	GRCh37	DELETION	VEGFA (NM_001171623) rearrangement: c.66+35:VEGFA_chr6:g.49431527del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {VEGFA:CENPQ}	5692443	NA	0	16	10	16
P-0053756-T01-IM6	SOMATIC	KMT2D	ADAMTS20	12	12	43764741	49433713	Intron of ADAMTS20(-):2Kb before exon 37	Exon 31 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) - ADAMTS20 (NM_025003) rearrangement: c.7840:KMT2D_c.5447-1557:ADAMTS20del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2D:ADAMTS20}	5668972	NA	0	64	10	66
P-0053759-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47044931	48952639	Exon 20 of RBM10(+)	5-UTR of WDR45(-):20Kb before coding start	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.2452:RBM10_chrX:g.48952639inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WDR45:RBM10}	1907708	NA	0	2	9	2
P-0053762-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	41147292	41385381	Intron of PTPRT(-):46Kb before exon 8	Intron of PTPRT(-):105bp before exon 6	GRCh37	DUPLICATION	PTPRT (NM_133170) rearrangement: c.685-105_c.1154-46090dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	238089	NA	0	43	0	46
P-0052166-T01-IM6	SOMATIC	RTEL1	BIRC7	20	20	61870601	62294231	Intron of BIRC7(+):16bp after exon 5	Exon 6 of RTEL1(+)	GRCh37	DUPLICATION	RTEL1 (NM_032957) - BIRC7 (NM_139317) rearrangement: c.599:RTEL1_c.649+16:BIRC7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RTEL1:BIRC7}	423630	NA	0	61	10	64
P-0053613-T02-IM6	SOMATIC	GNAS	GNAS	20	2	57485784	64415884	Exon 13 of GNAS(+)	3-UTR of LINC00309(-):17Kb after coding stop	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(2;20)(p14;q13.32)(chr2:g.64415884::chr20:g.57485784)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	14
P-0053830-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971204	21974797	Exon 2 of CDKN2A(-)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3590_c.197del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3593	NA	0	7	10	11
P-0053920-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11992390	12030613	Intron of ETV6(+):152bp after exon 3	Intron of ETV6(+):7Kb before exon 6	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.328+152_c.1010-6766dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	38223	NA	0	113	10	118
P-0053926-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39884116	42866932	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):427bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-427:TMPRSS2_c.39+63470:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2982816	NA	0	59	10	60
P-0047455-T05-IM6	SOMATIC	TSC2	TSC2	16	16	2119045	2120555	Intron of TSC2(+):1Kb before exon 17	Exon 17 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1717-1412_c.1815del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1510	NA	0	59	10	67
P-0048696-T02-IM6	SOMATIC	PMS1	PMS1	2	2	190723155	190732689	Intron of PMS1(+):3Kb after exon 9	Intron of PMS1(+):34bp after exon 11	GRCh37	DUPLICATION	PMS1 (NM_000534) rearrangement: c.1856+3301_c.2473+34dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	9534	NA	0	14	10	14
P-0053849-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864104	42870841	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):725bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-725:TMPRSS2_c.18+6183:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006737	NA	0	26	10	26
P-0053849-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187447856	187461323	Intron of BCL6(-):47bp before exon 5	5-UTR of BCL6(-):21Kb before coding start	GRCh37	DELETION	BCL6 (NM_001706) rearrangement: c.384-47:BCL6_chr3:g.187461323del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13467	NA	0	15	10	15
P-0053852-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33289936	33291251	Intron of DAXX(-):251bp before exon 2	Promoter of DAXX(-):5Kb from tx start	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.54-251:DAXX_chr6:g.33291251inv	PRECISE		MANUAL_OK	3to3	-	1315	NA	0	13	10	13
P-0052369-T02-IM6	SOMATIC	FGF4	FGF4	11	11	69567257	69588925	IGR: 21Kb before FGF4(-)	Intron of FGF4(-):30bp before exon 2	GRCh37	DUPLICATION	FGF4 (NM_002007) rearrangement: c.341-30:FGF4_chr11:g.69567257dup	PRECISE		MANUAL_OK	5to3	-	21668	NA	0	14	10	18
P-0052369-T02-IM6	SOMATIC	TP63	TP63	3	3	185353883	189585723	IGR: 8Kb before IGF2BP2(-)	Exon 7 of TP63(+)	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.984:TP63_chr3:g.185353883del	PRECISE		MANUAL_OK	3to5	-	4231840	NA	0	5	9	7
P-0053292-T02-IM6	SOMATIC	TP53	TP53	17	17	7358663	7579574	Exon 9 of CHRNB1(+)	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.113:TP53_chr17:g.7358663del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	220911	NA	0	18	10	20
P-0053693-T01-IM6	SOMATIC	TERT	TERT	5	5	1263784	1272488	Intron of TERT(-):734bp after exon 11	Intron of TERT(-):93bp before exon 7	GRCh37	DUPLICATION	TERT (NM_198253) rearrangement: c.2287-93_c.2843+735dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	8704	NA	0	6	0	10
P-0053695-T01-IM6	SOMATIC	TP63	NAALADL2	3	3	174981979	189455734	Intron of NAALADL2(+):8Kb after exon 4	Intron of TP63(+):77bp after exon 2	GRCh37	DUPLICATION	TP63 (NM_003722) - NAALADL2 (NM_207015) rearrangement: c.191+77:TP63_c.939+7660:NAALADL2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TP63:NAALADL2}	14473755	NA	0	19	10	19
P-0053786-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57862287	57864763	Intron of GLI1(+):280bp after exon 10	Exon 12 of GLI1(+)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.1308+280_c.2240inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2476	NA	0	16	10	18
P-0053928-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59924580	62297290	Exon 6 of BRIP1(-)	5-UTR of TEX2(-):71Kb before coding start	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.509:BRIP1_chr17:g.62297290inv	PRECISE		MANUAL_OK	3to3	-	2372710	NA	0	7	7	7
P-0053937-T01-IM6	SOMATIC	E2F3	ICK	6	6	20402603	52902004	Exon 1 of E2F3(+)	Intron of ICK(-):732bp after exon 4	GRCh37	INVERSION	E2F3 (NM_001949) - ICK (NM_014920) rearrangement: c.140:E2F3_c.156+733:ICKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {E2F3:ICK}	32499401	NA	0	110	10	108
P-0008846-T02-IM6	SOMATIC	NCOR1	NCOR1	17	17	13505708	15938421	Promoter of HS3ST3A1(-):107Kb from tx start	Intron of NCOR1(-):163bp before exon 45	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement : chr17:g.13505708_c.6956-163:NCORdel	PRECISE		MANUAL_OK	3to3	-	2432713	NA	0	5	10	5
P-0012824-T03-IM6	SOMATIC	WHSC1L1	EEA1	12	8	93231000	38146848	Intron of EEA1(-):4Kb before exon 11	Intron of WHSC1L1(-):62bp after exon 18	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) - EEA1 (NM_003566) rearrangement: t(8;12)(p11.23;q22)(chr8:g.38146848::chr12:g.93231000)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {WHSC1L1:EEA1}	0	NA	0	97	10	100
P-0016625-T04-IM6	SOMATIC	BAP1	BAP1	3	3	52435020	52437687	3-UTR of BAP1(-):1Kb after coding stop	Exon 13 of BAP1(-)	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1474:BAP1_chr3:g.52435020del	PRECISE		MANUAL_OK	3to5	-	2667	NA	0	99	10	100
P-0016625-T04-IM6	SOMATIC	TAP1	TAP1	6	6	32818967	32821124	Intron of TAP1(-):41bp before exon 4	Exon 1 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: c.470_c.1025-41del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2157	NA	0	109	10	111
P-0016625-T04-IM6	SOMATIC	PTPRD	PTPRD	9	9	8331767	8339135	Intron of PTPRD(-):31bp before exon 44	Intron of PTPRD(-):88bp before exon 43	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.5254-88_c.5380-31dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	7368	NA	0	12	10	12
P-0021753-T02-IM6	SOMATIC	CYLD	CYLD	16	8	50826545	122172237	Exon 15 of CYLD(+)	IGR: 399Kb before LOC101927543(+)	GRCh37	TRANSLOCATION	CYLD (NM_001042355) rearrangement: t(8;16)(q24.12;q12.1)(chr8:g.122172237::chr16:g.50826545)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	24	0	33
P-0024083-T04-IM6	SOMATIC	INHA	INHA	2	2	37386053	220440232	Promoter of EIF2AK2(-):54Kb from tx start	Exon 2 of INHA(+)	GRCh37	INVERSION	INHA (NM_002191) rearrangement: c.1085:INHA_chr2:g.37386053inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {INHA:EIF2AK2}	183054179	NA	0	69	10	70
P-0024083-T04-IM6	SOMATIC	LAMA4	ESR1	6	6	112437814	152163649	Intron of LAMA4(-):618bp before exon 36	Intron of ESR1(+):82bp before exon 3	GRCh37	INVERSION	LAMA4 (NM_001105206) - ESR1 (NM_001122740) rearrangement: c.4982-618:LAMA4_c.453-83:ESR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LAMA4:ESR1}	39725835	NA	0	31	10	31
P-0035466-T04-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18477917	18481516	Intron of PIK3C2G(+):51bp before exon 8	Intron of PIK3C2G(+):3Kb after exon 8	GRCh37	DUPLICATION	PIK3C2G (NM_004570) rearrangement: c.1209-52_c.1272+3484dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	3599	NA	0	8	6	9
P-0045811-T02-IM6	SOMATIC	NLRX1	KMT2A	11	11	118354751	119045387	Intron of KMT2A(+):146bp before exon 9	Exon 6 of NLRX1(+)	GRCh37	DUPLICATION	NLRX1 (NM_024618) - KMT2A (NM_001197104) rearrangement: c.1075:NLRX1_c.4087-147:KMT2Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NLRX1:KMT2A}	690636	NA	0	9	8	9
P-0047087-T02-IM6	SOMATIC	SUFU	PPAPDC1A	10	10	104375138	122286030	Exon 9 of SUFU(+)	Intron of PPAPDC1A(+):5Kb after exon 5	GRCh37	DELETION	SUFU (NM_016169) - PPAPDC1A (NM_001030059) rearrangement: c.1136:SUFU_c.445+5423:PPAPDC1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUFU:PPAPDC1A}	17910892	NA	0	9	10	9
P-0053694-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741278	1808911	Intron of TACC3(+):150bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2343:FGFR3_c.1942-151:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67633	NA	0	131	10	143
P-0053790-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113977008	113984669	Intron of PAX8(-):660bp after exon 11	Intron of PAX8(-):62bp after exon 10	GRCh37	DUPLICATION	PAX8 (NM_003466) rearrangement: c.1189+63_c.1276+661dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	7661	NA	0	6	5	6
P-0053860-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14222854	14628032	Intron of PRKACA(-):2Kb after exon 1	Intron of DNAJB1(-):174bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) rearrangement: c.212-174:DNAJB1_c.47-4633:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	405178	NA	0	79	10	79
P-0053862-T01-IM6	SOMATIC	PIK3R2	PIK3R2	22	19	21205376	18279285	Intron of PI4KA(-):7Kb after exon 1	Exon 14 of PIK3R2(+)	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(19;22)(p13.11;q11.21)(chr19:g.18279285::chr22:g.21205376)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	9	7
P-0053863-T01-IM6	SOMATIC	FLT1	FLT1	13	13	28847891	28913247	Intron of PAN3(+):2Kb after exon 14	Intron of FLT1(-):57bp after exon 17	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.2488+58:FLT1_chr13:g.28847891del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	65356	NA	0	4	6	4
P-0053888-T01-IM6	SOMATIC	HGF	HGF	7	7	81372163	81372744	Intron of HGF(-):505bp after exon 7	Exon 7 of HGF(-)	GRCh37	DELETION	HGF (NM_000601) rearrangement:  c.865+506_c.790del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	581	NA	0	15	10	16
P-0053901-T01-IM6	SOMATIC	STRN	ALK	2	2	29446375	37145859	Exon 20 of ALK(-)	Intron of STRN(-):3Kb before exon 3	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion: c.339-2565:STRN_c.3192:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STRN:ALK}	7699484	NA	0	41	10	46
P-0053902-T01-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29691606	46332601	Intron of EWSR1(+):622bp before exon 13	Exon 5 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46332601::chr22:g.29691606)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	NA	0	27	10	27
P-0053952-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268774	55271702	Intron of EGFR(+):106bp before exon 25	Intron of EGFR(+):1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-107_c.3272-1247del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2928	NA	0	68	10	74
P-0053957-T01-IM6	SOMATIC	CDH3	CDH1	16	16	68711901	68847281	Intron of CDH3(+):135bp before exon 4	Exon 9 of CDH1(+)	GRCh37	DELETION	CDH3 (NM_001793) - CDH1 (NM_004360) rearrangement: c.247-136:CDH3_c.1203:CDH1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDH3:CDH1}	135380	NA	0	155	10	161
P-0053960-T01-IM6	SOMATIC	GNAS	PTGIS	20	20	48181937	57428528	Intron of PTGIS(-):3Kb after exon 1	Exon 1 of GNAS(+)	GRCh37	INVERSION	GNAS (NM_016592) - PTGIS (NM_000961) rearrangement: GNAS_g.57428528C>T: PTGIS_c.74+2643G>A	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GNAS:PTGIS}	9246591	NA	0	31	0	31
P-0053993-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94926675	102811473	Exon 2 of SESN3(-)	Promoter of MMP13(-):2Kb from tx start	GRCh37	INVERSION	SESN3 (NM_144665) rearrangement: c.90:SESN3_chr11:g.102811473inv	IMPPRECISE		MANUAL_OK	3to3	-	7884798	NA	0	15	0	14
P-0053994-T01-IM6	SOMATIC	LLGL2	ERBB2	17	17	37884058	73557290	Exon 27 of ERBB2(+)	Intron of LLGL2(+):2Kb after exon 6	GRCh37	DUPLICATION	LLGL2 (NM_001031803) - ERBB2 (NM_004448) rearrangement: c.530+1799:LLGL2_c.3529:ERBB2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LLGL2:ERBB2}	35673232	NA	0	96	10	116
P-0031583-T02-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	42	10	51
P-0036294-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866085	42867521	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1016:TMPRSS2_c.18+4202:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001436	NA	0	63	10	67
P-0036721-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971013	22135542	Exon 2 of CDKN2A(-)	IGR: 133Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.388:CDKN2A_chr9:g.22135542del	IMPPRECISE		MANUAL_OK	3to5	-	164529	NA	0	94	0	100
P-0037409-T03-IM6	SOMATIC	ARID5B	KDM2B	12	10	121894267	63760134	Intron of KDM2B(-):3Kb before exon 13	Intron of ARID5B(+):54bp after exon 4	GRCh37	TRANSLOCATION	ARID5B (NM_032199) - KDM2B (NM_032590) rearrangement: t(10;12)(q21.2;q24.31)(chr10:g.63760134::chr12:g.121894267)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ARID5B:KDM2B}	0	NA	0	24	10	24
P-0053864-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15355041	15360185	Exon 13 of BRD4(-)	Intron of BRD4(-):5Kb before exon 12	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2159-4612_c.2581+1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5144	NA	0	8	10	8
P-0053894-T01-IM6	SOMATIC	TP53	TP53	17	17	7577873	7579575	Intron of TP53(-):265bp before exon 7	Exon 4 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.112_673-265del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1702	NA	0	4	0	4
P-0053910-T01-IM6	SOMATIC	EWSR1	NR4A3	22	9	29693550	102588069	Intron of EWSR1(+):266bp before exon 14	5-UTR of NR4A3(+):983bp before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - NR4A3 (NM_006981) fusion: t(9;22)(q22.33;q12.2)(chr9:g.102588069::chr22:g.29693550)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {NR4A3:EWSR1}	0	NA	0	14	10	14
P-0053940-T01-IM6	SOMATIC	CDC73	CDC73	1	1	161650180	193219806	Promoter of FCGR2B(+):17Kb from tx start	Exon 17 of CDC73(+)	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.1560:CDC73_chr1:g.161650180inv	PRECISE		MANUAL_OK	5to5	-	31569626	NA	0	27	10	39
P-0053943-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348266	380024	Intron of AXIN1(-):15bp before exon 6	Intron of AXIN1(-):15Kb before exon 3	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.879-15341_c.1255-15del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	31758	NA	0	24	10	24
P-0053946-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2129183	8294003	Exon 27 of TSC2(+)	IGR: 283Kb before TMEM114(-)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.3117:TSC2_chr16:g.8294003del	PRECISE		MANUAL_OK	3to5	-	6164820	NA	0	9	10	9
P-0053986-T01-IM6	SOMATIC	EED	EED	11	11	85961381	85964581	Exon 2 of EED(+)	Intron of EED(+):1Kb after exon 3	GRCh37	DUPLICATION	EED (NM_003797) rearrangement: c.158_c.360+1299dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3200	NA	0	12	10	12
P-0053986-T01-IM6	SOMATIC	SBF2	NTRK2	11	9	9990490	87479992	Intron of SBF2(-):398bp before exon 14	Intron of NTRK2(+):2Kb before exon 16	GRCh37	TRANSLOCATION	SBF2 (NM_030962) - NTRK2 (NM_006180) fusion: t(9;11)(q21.33;p15.4)(chr9:g.87479992::chr11:g.9990490)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SBF2:NTRK2}	0	NA	0	12	10	21
P-0054035-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971172	21992607	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):2Kb after exon 1	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.193+1531_c.229del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21435	NA	0	8	0	8
P-0054039-T01-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35871292	38548710	Intron of NFKBIA(-):26bp before exon 6	IGR: 128Kb before SSTR1(+)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.907-26:NFKBIA_chr14:g.38548710del	PRECISE		MANUAL_OK	3to5	-	2677418	NA	0	28	10	28
P-0054040-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39946095	42874257	Intron of ERG(-):1Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4141:TMPRSS2_c.39+1491:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2928162	NA	0	124	10	128
P-0012403-T04-IM6	SOMATIC	BRD4	BRD4	19	19	15241950	15364875	IGR: 16Kb before ILVBL(-)	Intron of BRD4(-):87bp after exon 11	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2158+88:BRD4_chr19:g.15241950del	PRECISE		MANUAL_OK	3to5	-	122925	NA	0	5	4	6
P-0025739-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63696495	63700095	Intron of ARID5B(+):3Kb before exon 3	Exon 3 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.277-3447_c.430del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3600	NA	0	6	10	6
P-0035768-T02-IM6	SOMATIC	KMT2D	KMT2D	12	6	49432543	238833	Exon 34 of KMT2D(-)	IGR: 53Kb before DUSP22(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(6;12)(p25.3;q13.12)(chr6:g.238833::chr12:g.49432543)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	102	10	103
P-0035768-T02-IM6	SOMATIC	NLGN3	MED12	X	X	70344932	70388518	Exon 15 of MED12(+)	Intron of NLGN3(+):585bp before exon 6	GRCh37	DUPLICATION	NLGN3 (NM_181303) - MED12 (NM_005120) rearrangement: c.1704-586:NLGN3_c.2162:MED12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NLGN3:MED12}	43586	NA	0	52	10	57
P-0053983-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140482850	140587430	Exon 10 of BRAF(-)	Intron of BRAF(-):37Kb after exon 1	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.138+36936_c.1285del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	104580	NA	0	4	9	4
P-0053991-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684445	128647321	Intron of EWSR1(+):149bp before exon 9	Intron of FLI1(+):4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128647321::chr22:g.29684445)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	107	10	114
P-0054003-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39933574	39939948	Exon 4 of BCOR(-)	5-UTR of BCOR(-):29Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.1025:BCOR_chrX:g.39939948del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6374	NA	0	58	10	59
P-0054068-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39881858	42868507	Intron of ERG(-):64Kb before exon 4	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+1539:TMPRSS2_c.40-64314:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2986649	NA	0	14	10	14
P-0054096-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21887809	21974653	IGR: 79Kb before CDKN2A-AS1(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3446:CDKN2A_chr9:g.21887809del	PRECISE		MANUAL_OK	3to5	-	86844	NA	0	30	10	35
P-0054103-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87636194	87647621	Exon 21 of NTRK2(+)	IGR: 362Kb before NTRK2(+)	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.2359:NTRK2_chr9:g.87647621del	PRECISE		MANUAL_OK	3to5	-	11427	NA	0	20	10	21
P-0054146-T01-IM6	SOMATIC	MAP2K1	MAP2K1	15	14	66679738	84540589	Exon 1 of MAP2K1(+)	IGR: 1Mb before LINC00911(+)	GRCh37	TRANSLOCATION	MAP2K1 (NM_002755) rearrangement: t(14;15)(q31.2;q22.31)(chr14:g.84540589::chr15:g.66679738)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	64	10	74
P-0054146-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861530	42870653	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):537bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-537:TMPRSS2_c.18+8757:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009123	NA	0	137	10	139
P-0054146-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151856082	151867971	Exon 44 of KMT2C(-)	Intron of KMT2C(-):377bp after exon 40	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.9453+378_c.11536del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11889	NA	0	112	10	119
P-0010860-T03-IM6	SOMATIC	CDH1	CDH1	16	16	68771105	68772116	Promoter of CDH1(+):89bp from tx start	Intron of CDH1(+):83bp before exon 2	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.-214_c.49-84del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1011	NA	0	126	0	127
P-0010860-T03-IM6	SOMATIC	TP63	TP63	3	3	189612211	190462983	Exon 14 of TP63(+)	IGR: 108Kb before GMNC(-)	GRCh37	INVERSION	TP63 (NM_003722) rearrangement: c.1963:TP63_chr3:g.190462983inv	PRECISE		MANUAL_OK	5to5	-	850772	NA	0	20	10	21
P-0030967-T03-IM6	SOMATIC	PREX2	PREX2	8	8	68908168	68942786	Intron of PREX2(+):22Kb before exon 2	Exon 6 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.142-21913_c.598dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	34618	NA	1	29	10	30
P-0039177-T02-IM6	SOMATIC	FLT3	FLT3	13	13	28268741	28622343	IGR: 73Kb before POLR1D(+)	Intron of FLT3(-):68bp after exon 9	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.1205+69:FLT3_chr13:g.28268741del	IMPPRECISE		MANUAL_OK	3to5	-	353602	NA	0	57	0	59
P-0043877-T02-IM6	SOMATIC	JAK3	JAK3	19	17	17952943	17684453	Intron of JAK3(-):181bp after exon 6	5-UTR of RAI1(+):12Kb before coding start	GRCh37	TRANSLOCATION	JAK3 (NM_000215) rearrangement: t(17;19)(p11.2;p13.11)(chr17:g.17684453::chr19:g.17952943)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {JAK3:RAI1}	0	NA	0	27	10	28
P-0047996-T02-IM6	SOMATIC	RB1	RB1	13	13	48920257	48939275	Intron of RB1(+):922bp after exon 4	Intron of RB1(+):168bp after exon 9	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.500+922_c.939+168dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	19018	NA	0	16	9	12
P-0047996-T02-IM6	SOMATIC	IGF1R	IGF1R	15	15	99377137	99454706	Intron of IGF1R(+):57Kb before exon 3	Intron of IGF1R(+):36bp after exon 7	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.641-57417_c.1589+36dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	77569	NA	0	7	0	8
P-0047996-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	212285262	212322897	Exon 25 of ERBB4(-)	Intron of ERBB4(-):27Kb before exon 21	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.2488-27072_c.3039dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	37635	NA	0	54	10	63
P-0047996-T02-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56179279	56181031	Intron of MAP3K1(+):74bp before exon 15	Intron of MAP3K1(+):378bp after exon 16	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.3667-75_c.3982+378del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1752	NA	0	8	0	68
P-0047996-T02-IM6	SOMATIC	MDC1	FLOT1	6	6	30670257	30696449	Intron of MDC1(-):72bp after exon 14	Intron of FLOT1(-):527bp before exon 13	GRCh37	DUPLICATION	MDC1 (NM_014641) - FLOT1 (NM_005803) rearrangement: c.6102+73:MDC1_c.1255-527:FLOT1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MDC1:FLOT1}	26192	NA	0	9	0	20
P-0048590-T02-IM6	SOMATIC	ARID1A	CAPZB	1	1	19761186	27093173	Intron of CAPZB(-):15Kb before exon 2	Intron of ARID1A(+):116bp after exon 10	GRCh37	INVERSION	ARID1A (NM_006015) - CAPZB (NM_001206540) rearrangement: c.2988+116:ARID1A_c.4-14942:CAPZBinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ARID1A:CAPZB}	7331987	NA	0	8	10	8
P-0048590-T02-IM6	SOMATIC	RASA1	RASA1	5	5	86670451	86672184	Intron of RASA1(+):205bp before exon 15	Intron of RASA1(+):25bp before exon 16	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.1935-206_c.2012-26del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1733	NA	0	17	10	17
P-0049560-T02-IM6	SOMATIC	DNMT3A	DTNB	2	2	25466823	25646846	Exon 16 of DNMT3A(-)	Intron of DTNB(-):4Kb after exon 14	GRCh37	DUPLICATION	DNMT3A (NM_022552) - DTNB (NM_021907) rearrangement: c.1880:DNMT3A_c.1554+3558:DTNBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3A:DTNB}	180023	NA	0	9	10	9
P-0049560-T02-IM6	SOMATIC	PTPRD	PTPRD	9	9	8341020	8520921	Intron of PTPRD(-):69bp after exon 41	Intron of PTPRD(-):355bp after exon 20	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.961+356_c.5126+70dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 21 exons : out of frame	179901	NA	0	5	0	5
P-0051006-T03-IM6	SOMATIC	RTEL1	TSHZ2	20	20	51821269	62325767	Intron of TSHZ2(+):19Kb after exon 1	Exon 31 of RTEL1(+)	GRCh37	DUPLICATION	RTEL1 (NM_032957) - TSHZ2 (NM_173485) rearrangement: c.3107:RTEL1_c.41-48769:TSHZ2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RTEL1:TSHZ2}	10504498	NA	0	10	10	11
P-0051695-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27078019	27088574	Intron of ARID1A(+):9Kb before exon 5	Intron of ARID1A(+):68bp before exon 7	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1921-9328_c.2252-69del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	10555	NA	0	129	10	129
P-0052499-T01-IM6	SOMATIC	ESR1	OPRM1	6	6	152201897	154365096	Exon 4 of ESR1(+)	Intron of OPRM1(+):33Kb after exon 1	GRCh37	DELETION	ESR1 (NM_001122740) - OPRM1 (NM_001008505) rearrangement: c.751:ESR1_c.290+4127:OPRM1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ESR1:OPRM1}	2163199	NA	0	7	10	7
P-0053401-T02-IM6	SOMATIC	TNFRSF13B	FGFR1	17	8	16853401	38273772	Intron of TNFRSF13B(-):1Kb before exon 3	Intron of FGFR1(-):194bp before exon 14	GRCh37	TRANSLOCATION	TNFRSF13B (NM_012452) - FGFR1 (NM_001174067) rearrangement: t(8;17)(p11.23;p11.2)(chr8:g.38273772::chr17:g.16853401)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TNFRSF13B:FGFR1}	0	NA	0	10	10	7
P-0053618-T02-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2479968	2491388	Promoter of LOC115110(-):1Kb from tx start	Exon 4 of TNFRSF14(+)	GRCh37	DELETION	TNFRSF14 (NM_003820) rearrangement: c.431:TNFRSF14_chr1:g.2479968del	PRECISE		MANUAL_OK	3to5	-	11420	NA	0	5	7	5
P-0053694-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1741278	1808911	Intron of TACC3(+):150bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2343:FGFR3_c.1942-151:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67633	NA	0	123	10	144
P-0054004-T01-IM6	SOMATIC	IDH1	IDH1	2	2	147851139	209103758	IGR: 507Kb before PABPC1P2(+)	Intron of IDH1(-):36bp after exon 9	GRCh37	DELETION	IDH1 (NM_005896) rearrangement: c.1154+37:IDH1_chr2:g.147851139del	PRECISE		MANUAL_OK	3to5	-	61252619	NA	0	5	6	6
P-0054015-T01-IM6	SOMATIC	POLE	POLE	12	12	133240952	133259250	Intron of POLE(-):3bp after exon 22	Intron of POLE(-):1Kb before exon 2	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.63-1385_c.2561+4inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	18298	NA	0	95	10	134
P-0054019-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148542362	148543567	Intron of EZH2(-):1Kb after exon 3	Exon 3 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.241_c.246+1200del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1205	NA	0	4	8	4
P-0054023-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39883187	42875644	Intron of ERG(-):64Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4233:TMPRSS2_c.39+64399:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2992457	NA	0	87	10	89
P-0054042-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3786878	6080195	Intron of CREBBP(-):62bp before exon 27	5-UTR of RBFOX1(+):1Mb before coding start	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.4395-62:CREBBP_chr16:g.6080195del	PRECISE		MANUAL_OK	3to5	-	2293317	NA	0	42	10	43
P-0054042-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39973227	42875257	3-UTR of ERG(-):60Kb after coding stop	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4620:TMPRSS2_chr21:g.39973227del	PRECISE		MANUAL_OK	3to5	-	2902030	NA	0	46	10	47
P-0054046-T01-IM6	SOMATIC	BRAF	GTF2IRD1	7	7	73984431	140484706	Intron of GTF2IRD1(+):10Kb after exon 22	Intron of BRAF(-):2Kb before exon 10	GRCh37	INVERSION	BRAF (NM_004333) - GTF2IRD1 (NM_005685) rearrangement: c.1178-1749:BRAF_c.2320+10446:GTF2IRD1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:GTF2IRD1}	66500275	NA	0	8	10	15
P-0054074-T01-IM6	SOMATIC	CIC	CIC	19	1	42796655	169076998	Intron of CIC(+):37bp after exon 13	Intron of ATP1B1(+):834bp after exon 1	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(1;19)(q24.2;q13.2)(chr1:g.169076998::chr19:g.42796655)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	13	10	12
P-0054074-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33793107	41304668	Exon 1 of CEBPA(-)	5-UTR of RAB4B-EGLN2(+):10Kb before coding start	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.214:CEBPA_chr19:g.41304668inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RAB4B-EGLN2:CEBPA}	7511561	NA	0	3	8	3
P-0038248-T07-IM6	SOMATIC	EWSR1	EWSR1	X	22	18240929	29683750	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):627bp after exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.13)(chr22:g.29683750::chrX:g.18240929)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	10	0	161
P-0046530-T03-IM6	SOMATIC	MAP3K14	SMURF2	17	17	43348562	62584761	Exon 10 of MAP3K14(-)	Intron of SMURF2(-):2Kb after exon 5	GRCh37	DUPLICATION	MAP3K14 (NM_003954) - SMURF2 (NM_022739) rearrangement: c.1683_c.400:MAP3K14+2441:SMURF2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MAP3K14:SMURF2}	19236199	NA	0	104	10	113
P-0046530-T03-IM6	SOMATIC	MLH1	MLH1	19	3	8765207	37038268	IGR: 43Kb before ACTL9(-)	Intron of MLH1(+):68bp after exon 2	GRCh37	TRANSLOCATION	MLH1 (NM_000249) rearrangement: t(3;19)(p22.2;p13.2)(chr3:g.37038268::chr19:g.8765207)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	27	0	29
P-0053626-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44761668	44879698	Intron of KDM6A(+):28Kb after exon 2	Intron of KDM6A(+):156bp before exon 6	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.225+28435_c.444-157del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	118030	NA	0	14	7	14
P-0053720-T02-IM6	SOMATIC	IKBKE	IKBKE	13	1	83313255	206647786	IGR: 1Mb before SLITRK1(-)	Exon 4 of IKBKE(+)	GRCh37	TRANSLOCATION	IKBKE (NM_014002) rearrangement: t(1;13)(q32.1;q31.1)(chr1:g.206647786::chr13:g.83313255)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	80	10	84
P-0053720-T02-IM6	SOMATIC	RB1	PHF11	13	13	49051260	50076268	Intron of RB1(+):230bp before exon 26	Intron of PHF11(+):5Kb before exon 2	GRCh37	DELETION	RB1 (NM_000321) - PHF11 (NM_001040443) rearrangement: c.2664-231:RB1_c.95-4503:PHF11del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RB1:PHF11}	1025008	NA	0	5	0	5
P-0054149-T01-IM6	SOMATIC	NAV2	MAP3K14	17	11	43351003	19872521	Intron of MAP3K14(-):29bp before exon 9	Intron of NAV2(+):8Kb after exon 3	GRCh37	TRANSLOCATION	NAV2 (NM_001244963) - MAP3K14 (NM_003954) fusion: t(11;17)(p15.1;q21.31)(chr11:g.19872521::chr17:g.43351003)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NAV2:MAP3K14}	0	NA	0	7	0	17
P-0054149-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61704232	61721094	Promoter of XPO1(-):836bp from tx start	Exon 12 of XPO1(-)	GRCh37	INVERSION	XPO1 (NM_003400) rearrangement: c.1180:XPO1_chr2:g.61704232inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	16862	NA	0	3	5	3
P-0054149-T01-IM6	SOMATIC	ZRSR2	ZRSR2	X	X	15808430	15809009	Promoter of ZRSR2(+):143bp from tx start	Intron of ZRSR2(+):47bp before exon 2	GRCh37	DELETION	ZRSR2 (NM_005089) rearrangement: c.42-48:ZRSR2_chrX:g.15808430del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	579	NA	0	51	0	65
P-0054150-T01-IM6	SOMATIC	SUZ12	SUZ12	17	17	30302771	52350640	Intron of SUZ12(+):39bp after exon 7	IGR: 450Kb before KIF2B(+)	GRCh37	DELETION	SUZ12 (NM_015355) rearrangement: c.823+39:SUZ12_chr17:g.52350640del	PRECISE		MANUAL_OK	3to5	-	22047869	NA	0	29	10	50
P-0054150-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31385895	31388511	Intron of DNMT3B(+):370bp before exon 15	Intron of DNMT3B(+):129bp before exon 18	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.1491-371_c.1906-130del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2616	NA	0	25	10	25
P-0054152-T01-IM6	SOMATIC	APC	APC	5	5	112163635	112173380	Exon 13 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1558_c.2089del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9745	NA	0	9	10	9
P-0054154-T01-IM6	SOMATIC	BACH1	TMPRSS2	21	21	30702897	42866728	Intron of BACH1(+):883bp after exon 4	Intron of TMPRSS2(-):223bp before exon 3	GRCh37	INVERSION	BACH1 (NM_001186) - TMPRSS2 (NM_001135099) rearrangement: c.1776+883:BACH1_c.127-223:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {BACH1:TMPRSS2}	12163831	NA	0	33	10	33
P-0054157-T01-IM6	SOMATIC	APC	APC	5	5	112170857	112660096	Exon 15 of APC(+)	Intron of MCC(-):16Kb after exon 3	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1953:APC_chr5:g.112660096del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	489239	NA	0	53	10	54
P-0054158-T01-IM6	SOMATIC	TP53	TP53	17	17	7573237	7579259	Intron of TP53(-):229bp before exon 11	Intron of TP53(-):52bp after exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.375+53_c.1101-229del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	6022	NA	0	51	10	53
P-0054159-T01-IM6	SOMATIC	EWSR1	EWSR1	22	9	29684716	102584899	Exon 9 of EWSR1(+)	5-UTR of NR4A3(+):4Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) fusion: t(9;22)(q22.33;q12.2)(chr9:g.102584899::chr22:g.29684716)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:NR4A3}	0	NA	0	8	10	12
P-0054162-T01-IM6	SOMATIC	SPOP	SPOP	17	17	47696381	47699205	Exon 5 of SPOP(-)	Intron of SPOP(-):102bp after exon 3	GRCh37	DELETION	SPOP (NM_001007228) rearrangement: c.200+103_c.442del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2824	NA	0	77	10	82
P-0054189-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55206221	55222304	Intron of EGFR(+):4Kb before exon 2	Intron of EGFR(+):459bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-3758_c.889+459del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	16083	NA	0	122	10	403
P-0054191-T01-IM6	SOMATIC	FGFR2	BICD1	12	10	32465127	123242849	Intron of BICD1(+):6Kb after exon 4	Intron of FGFR2(-):362bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - BICD1 (NM_001714) fusion: t(10;12)(q26.13;p11.21)(chr10:g.123242849::chr12:g.32465127)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICD1}	0	NA	0	69	10	79
P-0054194-T01-IM6	SOMATIC	NF1	NF1	17	17	29496850	29499761	Intron of NF1(+):58bp before exon 5	Intron of NF1(+):3Kb after exon 5	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.480-59_c.586+2746dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2911	NA	0	30	10	31
P-0053963-T02-IM6	SOMATIC	SPTBN1	ALK	2	2	29448345	54847414	Exon 19 of ALK(-)	Intron of SPTBN1(+):1Kb before exon 8	GRCh37	INVERSION	SPTBN1 (NM_003128) - ALK (NM_004304) fusion: c.764-1123:SPTBN1_c.3154:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SPTBN1:ALK}	25399069	NA	0	149	10	149
P-0024670-T02-IM6	SOMATIC	TP63	TP63	3	3	189394920	189526196	Intron of TP63(+):46Kb after exon 1	Exon 4 of TP63(+)	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.62+45554_c.460del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	131276	NA	0	31	10	31
P-0038005-T03-IM6	SOMATIC	CSDE1	CSDE1	1	1	115282343	115918560	Exon 4 of CSDE1(-)	IGR: 90Kb before NGF(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.307:CSDE1_chr1:g.115918560del	PRECISE		MANUAL_OK	3to5	-	636217	NA	0	17	10	17
P-0038005-T03-IM6	SOMATIC	ESR1	ESR1	X	6	148731239	152265637	IGR: 39Kb before MAGEA11(+)	Exon 5 of ESR1(+)	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;X)(q25.1;q28)(chr6:g.152265637::chrX:g.148731239)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	58	10	59
P-0052366-T02-IM6	SOMATIC	DNMT1	DNMT1	19	19	8609799	10283940	Intron of MYO1F(-):451bp before exon 14	Intron of DNMT1(-):90bp before exon 8	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.636-90:DNMT1_chr19:g.8609799inv	PRECISE		MANUAL_OK	3to3	-	1674141	NA	0	14	10	14
P-0052366-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11169080	13658770	Intron of SMARCA4(+):41bp after exon 31	IGR: 200Kb before CCDC130(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4533+41:SMARCA4_chr19:g.13658770del	IMPPRECISE		MANUAL_OK	3to5	-	2489690	NA	0	14	0	14
P-0052809-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29683281	39756407	Intron of EWSR1(+):158bp after exon 8	Intron of ERG(-):562bp before exon 10	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39756407::chr22:g.29683281)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	58	10	59
P-0054050-T03-IM6	SOMATIC	NUDCD3	ROS1	7	6	44523353	117645481	Intron of NUDCD3(-):1Kb after exon 2	Intron of ROS1(-):13bp after exon 34	GRCh37	TRANSLOCATION	NUDCD3 (NM_015332) - ROS1 (NM_002944) fusion: t(6;7)(q22.1;p13)(chr6:g.117645481::chr7:g.44523353)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NUDCD3:ROS1}	0	NA	0	151	10	160
P-0054214-T01-IM6	SOMATIC	CCND1	CCND1	11	9	69465854	32399624	Intron of CCND1(+):31bp before exon 5	5-UTR of ACO1(+):6Kb before coding start	GRCh37	TRANSLOCATION	CCND1 (NM_053056) rearrangement: t(9;11)(p21.1;q13.3)(chr9:g.32399624::chr11:g.69465854)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {ACO1:CCND1}	0	NA	0	47	10	47
P-0054216-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	19	3565966	18277014	IGR: 7Kb before HMG20B(+)	Exon 12 of PIK3R2(+)	GRCh37	INVERSION	PIK3R2 (NM_005027) rearrangement: c.1461:PIK3R2_chr19:g.3565966inv	PRECISE		MANUAL_OK	5to5	-	14711048	NA	0	3	7	3
P-0054218-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40540504	42874210	IGR: 7Kb before PSMG1(-)	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4094:TMPRSS2_chr21:g.40540504del	PRECISE		MANUAL_OK	3to5	-	2333706	NA	0	89	10	92
P-0054249-T01-IM6	SOMATIC	SHROOM2	ZRSR2	X	X	9862447	15836568	Exon 4 of SHROOM2(+)	Intron of ZRSR2(+):141bp before exon 9	GRCh37	DELETION	SHROOM2 (NM_001649) - ZRSR2 (NM_005089) rearrangement: c.499:SHROOM2_c.772-142:ZRSR2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SHROOM2:ZRSR2}	5974121	NA	0	15	10	15
P-0054253-T01-IM6	SOMATIC	PLEKHA7	ALK	11	2	16813809	29448396	Intron of PLEKHA7(-):1Kb before exon 20	Exon 19 of ALK(-)	GRCh37	TRANSLOCATION	PLEKHA7 (NM_175058) - ALK (NM_004304) fusion: t(2;11)(p23.2;p15.1)(chr2:g.29448396::chr11:g.16813809)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLEKHA7:ALK}	0	NA	0	74	10	76
P-0054253-T01-IM6	SOMATIC	ARID1A	ARID1A	4	1	186963188	27107244	IGR: 27Kb before TLR3(+)	Exon 20 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;4)(p36.11;q35.1)(chr1:g.27107244::chr4:g.186963188)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0054329-T01-IM6	SOMATIC	NOTCH1	AGPAT2	9	9	139391325	139573036	Exon 34 of NOTCH1(-)	Intron of AGPAT2(-):1Kb before exon 2	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - AGPAT2 (NM_006412) rearrangement: c.6866:NOTCH1_c.183-1028:AGPAT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH1:AGPAT2}	181711	NA	0	7	10	7
P-0054331-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140534668	140552202	Exon 3 of BRAF(-)	Intron of BRAF(-):2Kb before exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.139-2190_c.245del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17534	NA	0	8	10	8
P-0054334-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	33434155	34071361	Intron of RAD51D(-):655bp before exon 3	Promoter of GAS2L2(-):168bp from tx start	GRCh37	DELETION	RAD51D (NM_133629) rearrangement: c.145-655:RAD51D_chr17:g.34071361del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {GAS2L2:RAD51D}	637206	NA	0	5	0	5
P-0054336-T01-IM6	SOMATIC	CCNE1	CCNE1	19	18	30303874	19737516	Intron of CCNE1(+):1bp before exon 4	IGR: 9Kb before GATA6-AS1(-)	GRCh37	TRANSLOCATION	CCNE1 (NM_001238) rearrangement: t(18;19)(q11.2;q12)(chr18:g.19737516::chr19:g.30303874)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	18
P-0054336-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263792	41266540	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.337:CTNNB1_chr3:g.41263792del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2748	NA	0	5	3	5
P-0054336-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1351756	1953870	Intron of UVSSA(+):3Kb after exon 7	Exon 11 of WHSC1(+)	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.2049:WHSC1_chr4:g.1351756dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WHSC1:UVSSA}	602114	NA	0	4	10	4
P-0054353-T01-IM6	SOMATIC	FGFR3	CCDC149	4	4	1808701	24839121	Intron of FGFR3(+):40bp after exon 17	Intron of CCDC149(-):99bp before exon 6	GRCh37	INVERSION	FGFR3 (NM_000142) - CCDC149 (NM_001130726) fusion: c.2274+40:FGFR3_c.490-99:CCDC149inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FGFR3:CCDC149}	23030420	NA	0	180	10	180
P-0054356-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11190749	11239532	Exon 39 of MTOR(-)	Intron of MTOR(-):12Kb before exon 29	GRCh37	DUPLICATION	MTOR (NM_004958) rearrangement: c.4254-11958_c.5450dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	48783	NA	0	35	10	36
P-0054356-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89805872	90048839	Intron of FANCA(-):13bp after exon 40	5-UTR of AFG3L1P(+):14Kb before coding start	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.4010+14:FANCA_chr16:g.90048839del	PRECISE		MANUAL_OK	3to5	-	242967	NA	0	6	10	11
P-0054356-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18962994	18963842	Exon 6 of UPF1(+)	Exon 7 of UPF1(+)	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: c.861_c.1019del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	848	NA	0	11	10	12
P-0054356-T01-IM6	SOMATIC	ICOSLG	ICOSLG	21	2	45655421	111779463	Exon 4 of ICOSLG(-)	Intron of ACOXL(+):10Kb before exon 15	GRCh37	TRANSLOCATION	ICOSLG (NM_015259) rearrangement: t(2;21)(q13;q22.3)(chr2:g.111779463::chr21:g.45655421)	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	31	0	31
P-0054357-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	23595745	32893230	IGR: 125Kb before BASP1P1(-)	Exon 3 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.84:BRCA2_chr13:g.23595745inv	PRECISE		MANUAL_OK	5to5	-	9297485	NA	0	4	6	4
P-0054357-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32911492	32914597	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.3000_c.6105del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3105	NA	0	14	10	17
P-0054357-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52439941	52450493	Intron of BAP1(-):13bp before exon 10	Intron of PHF7(+):2Kb after exon 4	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.784-13:BAP1_chr3:g.52450493del	PRECISE		MANUAL_OK	3to5	-	10552	NA	0	5	10	5
P-0054358-T01-IM6	SOMATIC	HIST1H3H	HIST1H3H	6	6	27778259	27803371	Exon 1 of HIST1H3H(+)	Promoter of HIST1H2AK(-):2Kb from tx start	GRCh37	DELETION	HIST1H3H (NM_003536) rearrangement: c.408:HIST1H3H_chr6:g.27803371del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25112	NA	0	133	10	144
P-0054359-T01-IM6	SOMATIC	KNSTRN	KNSTRN	15	15	38995156	40678466	Promoter of C15orf53(+):6Kb from tx start	Intron of KNSTRN(+):96bp before exon 3	GRCh37	DELETION	KNSTRN (NM_033286) rearrangement: c.305-97:KNSTRN_chr15:g.38995156del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {C15orf53:KNSTRN}	1683310	NA	0	23	10	24
P-0054364-T01-IM6	SOMATIC	SNX8	BRAF	7	7	2295944	140488730	Intron of SNX8(-):564bp after exon 10	Intron of BRAF(-):1Kb before exon 9	GRCh37	DUPLICATION	SNX8 (NM_013321) - BRAF (NM_004333) fusion: c.1284+565:SNX8_c.1141-1346:BRAFdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SNX8:BRAF}	138192786	NA	0	3	0	5
P-0006645-T02-IM6	SOMATIC	FGFR1	HOOK3	8	8	38271259	42798201	Exon 19 of FGFR1(-)	Intron of HOOK3(+):254bp before exon 5	GRCh37	INVERSION	FGFR1 (NM_001174067) - HOOK3 (NM_032410) fusion: c.2449:FGFR1_c.268-255:HOOK3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR1:HOOK3}	4526942	NA	0	321	10	543
P-0016894-T02-IM6	SOMATIC	EZH1	EZH1	17	17	40533354	40876410	5-UTR of STAT3(-):66Kb before coding start	Exon 5 of EZH1(-)	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.279:EZH1_chr17:g.40533354del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EZH1:STAT3}	343056	NA	0	24	10	26
P-0026369-T03-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	50482415	50484996	Exon 6 of SMARCD1(+)	Intron of SMARCD1(+):623bp after exon 9	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement: c.766_c.1133+623del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2581	NA	0	53	10	57
P-0038853-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151845640	151874970	Exon 52 of KMT2C(-)	Exon 38 of KMT2C(-)	GRCh37	DUPLICATION	KMT2C(NM_170606) Rearrangement: c.7568_c.13372dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	29330	NA	0	62	10	64
P-0043745-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151949041	152012552	Exon 11 of KMT2C(-)	Intron of KMT2C(-):129bp before exon 4	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.390-129:KMT2C_chr7:g.151949041del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63511	NA	0	4	8	4
P-0047288-T04-IM6	SOMATIC	PBRM1	PBRM1	3	3	52408809	52584431	Intron of DNAH1(+):446bp before exon 45	Intron of PBRM1(-):5bp after exon 29	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.4576+6:PBRM1_chr3:g.52408809del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	175622	NA	0	13	10	14
P-0048286-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89687548	89690810	Intron of PTEN(+):2Kb after exon 3	Exon 4 of PTEN(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.209+2234_c.217inv	PRECISE		MANUAL_OK	5to5	-	3262	NA	0	6	8	6
P-0048286-T02-IM6	SOMATIC	E2F3	E2F3	17	6	14294522	20402827	IGR: 87Kb before MGC12916(+)	Exon 1 of E2F3(+)	GRCh37	TRANSLOCATION	E2F3 (NM_001949) rearrangement: t(6;17)(p22.3;p12)(chr6:g.20402827::chr17:g.14294522)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	10	0	10
P-0052291-T02-IM6	SOMATIC	IGF1R	IGF1R	15	15	99312545	99465630	Intron of IGF1R(+):61Kb after exon 2	Exon 11 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.640+61209_c.2455del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	153085	NA	0	58	10	60
P-0052291-T02-IM6	SOMATIC	PTK2	DOT1L	19	8	2222295	141713215	Exon 24 of DOT1L(+)	Intron of PTK2(-):409bp before exon 25	GRCh37	TRANSLOCATION	PTK2 (NM_005607) - DOT1L (NM_032482) rearrangement: t(8;19)(q24.3;p13.3)(chr8:g.141713215::chr19:g.2222295)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTK2:DOT1L}	0	NA	0	23	10	26
P-0053054-T01-IM6	SOMATIC	KIT	KIT	4	4	55564784	57194991	Intron of KIT(+):53bp after exon 3	3-UTR of KIAA1211(+):31Kb after coding stop	GRCh37	DELETION	KIT (NM_000222) rearrangement: c.619+53:KIT_chr4:g.57194991del	PRECISE		MANUAL_OK	3to5	-	1630207	NA	0	17	10	17
P-0054060-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39932731	39947136	Exon 4 of BCOR(-)	5-UTR of BCOR(-):36Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.1868:BCOR_chrX:g.39947136del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14405	NA	0	105	10	110
P-0054061-T01-IM6	SOMATIC	B2M	B2M	15	15	45003206	45005914	Promoter of B2M(+):478bp from tx start	Intron of B2M(+):2Kb before exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-1707:B2M_chr15:g.45003206del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2708	NA	0	5	6	5
P-0054061-T01-IM6	SOMATIC	MAPK1	MAPK1	22	22	22153502	22192544	Intron of MAPK1(-):85bp before exon 4	Intron of MAPK1(-):29Kb after exon 1	GRCh37	DELETION	MAPK1 (NM_002745) rearrangement: c.119+29068_c.493-85del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	39042	NA	0	3	10	5
P-0054115-T02-IM6	SOMATIC	NFKBIA	NFKBIA	14	14	35657876	35871428	Intron of KIAA0391(+):8Kb after exon 3	Intron of NFKBIA(-):162bp before exon 6	GRCh37	DUPLICATION	NFKBIA (NM_020529) rearrangement: c.907-162:NFKBIA_chr14:g.35657876dup	PRECISE		MANUAL_OK	5to3	-	213552	NA	0	5	10	5
P-0054115-T02-IM6	SOMATIC	ARID1B	ARID1B	6	6	157422705	157469805	Intron of ARID1B(+):9Kb before exon 7	Exon 9 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.2282-8901_c.2599inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	47100	NA	0	76	10	76
P-0054115-T02-IM6	SOMATIC	MYC	MYC	8	8	128750743	128767686	Exon 2 of MYC(+)	IGR: 19Kb before MYC(+)	GRCh37	DUPLICATION	MYC (NM_002467) rearrangement: c.280:MYC_chr8:g.128767686dup	PRECISE		MANUAL_OK	5to3	-	16943	NA	0	96	10	96
P-0054123-T02-IM6	SOMATIC	DROSHA	DROSHA	5	5	26576318	31449361	IGR: 304Kb before CDH9(-)	Intron of DROSHA(-):26bp after exon 21	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.2821+27:DROSHA_chr5:g.26576318del	PRECISE		MANUAL_OK	3to5	-	4873043	NA	0	38	10	39
P-0054123-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21965321	21970794	Promoter of CDKN2A(-):2Kb from tx start	Intron of CDKN2A(-):106bp after exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.457+107:CDKN2A_chr9:g.21965321del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	5473	NA	0	85	10	87
P-0054292-T01-IM6	SOMATIC	RAD50	RAD50	5	5	131939079	131939825	Exon 14 of RAD50(+)	Intron of RAD50(+):87bp after exon 15	GRCh37	DUPLICATION	RAD50 (NM_005732) rearrangement: c.2295_c.2524+87dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	746	NA	0	50	10	50
P-0054295-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	140647045	157150353	IGR: 121Kb before MIR3668(+)	Intron of ARID1B(+):7bp before exon 2	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.1543-8:ARID1B_chr6:g.140647045inv	PRECISE		MANUAL_OK	5to5	-	16503308	NA	0	5	10	6
P-0054303-T01-IM6	SOMATIC	DROSHA	DROSHA	5	2	31504903	58439504	Intron of DROSHA(-):161bp before exon 10	Intron of FANCL(-):8Kb before exon 6	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(2;5)(p16.1;p13.3)(chr2:g.58439504::chr5:g.31504903)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	10
P-0054307-T01-IM6	SOMATIC	TCEA3	IKBKE	1	1	23750712	206650096	Intron of TCEA3(-):345bp after exon 1	Exon 7 of IKBKE(+)	GRCh37	INVERSION	TCEA3 (NM_003196) - IKBKE (NM_014002) rearrangement: c.69+346:TCEA3_c.616:IKBKEinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TCEA3:IKBKE}	182899384	NA	0	4	10	6
P-0054307-T01-IM6	SOMATIC	CREBBP	ZSCAN10	16	16	3141530	3781866	Intron of ZSCAN10(-):10bp after exon 4	Exon 29 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - ZSCAN10 (NM_032805) rearrangement: c.4801:CREBBP_c.622+11:ZSCAN10del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:ZSCAN10}	640336	NA	0	4	10	4
P-0054311-T01-IM6	SOMATIC	POLE	POLE	12	11	133245250	2515266	Exon 18 of POLE(-)	Intron of KCNQ1(+):34Kb before exon 2	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(11;12)(p15.5;q24.33)(chr11:g.2515266::chr12:g.133245250)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	18	10	26
P-0054319-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39891646	42879266	Intron of ERG(-):56Kb after exon 3	Intron of TMPRSS2(-):610bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+611:TMPRSS2_c.39+55940:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987620	NA	0	43	10	43
P-0054319-T01-IM6	SOMATIC	AR	AR	X	X	66815829	66931424	Intron of AR(+):47Kb before exon 2	Exon 4 of AR(+)	GRCh37	DUPLICATION	AR (NM_000044) rearrangement: c.1617-47269_c.2066dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	115595	NA	0	70	10	73
P-0054323-T01-IM6	SOMATIC	EPHA5	EPHA5	4	4	66270036	66375616	Intron of EPHA5(-):55bp after exon 8	Intron of EPHA5(-):14Kb before exon 4	GRCh37	INVERSION	EPHA5 (NM_004439) rearrangement: c.911-14355_c.1790+56inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	105580	NA	0	6	0	6
P-0054325-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12020037	12092716	Intron of ETV6(+):2Kb before exon 5	IGR: 131Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-2321:ETV6_chr12:g.12092716del	PRECISE		MANUAL_OK	3to5	-	72679	NA	0	64	10	66
P-0054341-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57488021	57505195	Intron of NAB2(+):373bp before exon 7	3-UTR of STAT6(-):1bp after coding stop	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1469-374:NAB2_chr12:g.57505195inv	PRECISE		MANUAL_OK	5to5	-	17174	NA	0	29	10	30
P-0054352-T01-IM6	SOMATIC	CD74	ROS1	6	5	117649394	149783536	Intron of ROS1(-):1Kb after exon 32	Intron of CD74(-):661bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783536::chr6:g.117649394)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	73	10	74
P-0054225-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11110164	11118720	Intron of SMARCA4(+):3Kb after exon 11	Intron of SMARCA4(+):21bp after exon 14	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1812+2944_c.2123+21del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	8556	NA	0	3	5	3
P-0054225-T01-IM6	SOMATIC	FBXW7	FBXW7	4	4	153247036	153251419	Intron of FBXW7(-):121bp after exon 10	Intron of FBXW7(-):464bp after exon 7	GRCh37	DUPLICATION	FBXW7 (NM_033632) rearrangement: c.1122+465_c.1644+122dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	4383	NA	0	30	10	30
P-0010783-T02-IM6	SOMATIC	TP53	TP53	17	17	7577943	7580384	Intron of TP53(-):233bp after exon 6	5-UTR of TP53(-):7Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.672+234:TP53_chr17:g.7580384dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	2441	NA	0	15	10	20
P-0043226-T03-IM6	SOMATIC	CALR	CALR	19	19	13048710	13050103	Promoter of CALR(+):703bp from tx start	Intron of CALR(+):54bp after exon 2	GRCh37	INVERSION	CALR (NM_004343) rearrangement: c.193+54:CALR_chr19:g.13048710inv	PRECISE		MANUAL_OK	5to5	-	1393	NA	0	112	10	124
P-0049350-T02-IM6	SOMATIC	PXN	MSI1	12	12	120685181	120795011	Intron of PXN(-):18Kb after exon 1	Intron of MSI1(-):189bp before exon 9	GRCh37	DUPLICATION	PXN (NM_001080855) - MSI1 (NM_002442) rearrangement: c.13+18239:PXN_c.535-189:MSI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PXN:MSI1}	109830	NA	0	11	6	11
P-0049830-T03-IM6	SOMATIC	EWSR1	ATF1	22	12	29685150	51199670	Intron of EWSR1(+):375bp after exon 9	Intron of ATF1(+):4Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51199670::chr22:g.29685150)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	124	10	144
P-0053287-T02-IM6	SOMATIC	KMT2D	KMT2D	12	12	48469451	49428558	Intron of SENP1(-):875bp before exon 7	Intron of KMT2D(-):36bp after exon 35	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.10355+37:KMT2D_chr12:g.48469451del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KMT2D:SENP1}	959107	NA	0	24	10	26
P-0053607-T02-IM6	SOMATIC	TP53	NF1	17	17	7577448	29436090	Intron of TP53(-):50bp after exon 7	Intron of NF1(+):14Kb after exon 1	GRCh37	INVERSION	TP53 (NM_000546) - NF1 (NM_001042492) rearrangement: c.782+51:TP53_c.60+13703:NF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TP53:NF1}	21858642	NA	0	89	10	98
P-0053610-T02-IM6	SOMATIC	CD74	ROS1	6	5	117646450	149782626	Intron of ROS1(-):872bp before exon 34	Intron of CD74(-):57bp after exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782626::chr6:g.117646450)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	5	0	5
P-0053629-T02-IM6	SOMATIC	E2F3	FGD2	6	6	20404233	36990033	Intron of E2F3(+):1Kb after exon 1	Exon 13 of FGD2(+)	GRCh37	DELETION	E2F3 (NM_001949) - FGD2 (NM_173558) rearrangement: c.393+1377:E2F3_c.1345:FGD2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {E2F3:FGD2}	16585800	NA	0	19	10	19
P-0053694-T03-IM6	SOMATIC	FGFR3	TACC3	4	4	1741278	1808911	Intron of TACC3(+):150bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2343:FGFR3_c.1942-151:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67633	NA	0	23	10	23
P-0054113-T02-IM6	SOMATIC	NCOA3	NCOA3	20	20	46262925	58412750	Exon 10 of NCOA3(+)	Intron of PHACTR3(+):1Kb after exon 9	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.1098:NCOA3_chr20:g.58412750inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	12149825	NA	0	35	10	35
P-0054142-T02-IM6	SOMATIC	EZH2	EZH2	7	7	148504862	148549191	Intron of EZH2(-):64bp before exon 20	5-UTR of EZH2(-):44Kb before coding start	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.2196-64:EZH2_chr7:g.148549191del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	44329	NA	0	7	0	8
P-0054244-T01-IM6	SOMATIC	FGFR2	SORBS1	10	10	97132188	123243201	Intron of SORBS1(-):382bp before exon 18	Intron of FGFR2(-):10bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - SORBS1 (NM_001034954) fusion: c.2301+11:FGFR2_c.1738-382:SORBS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:SORBS1}	26111013	NA	0	104	10	106
P-0054263-T01-IM6	SOMATIC	EML4	ALK	2	2	29446557	42507780	Intron of ALK(-):163bp before exon 20	Intron of EML4(+):209bp before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-210:EML4_c.3173-163:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13061223	NA	0	28	10	28
P-0054264-T01-IM6	SOMATIC	MYC	MYC	8	8	128752660	128753190	Exon 3 of MYC(+)	Exon 3 of MYC(+)	GRCh37	DUPLICATION	MYC (NM_002467) rearrangement: c.821_c.1351dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	530	NA	0	117	10	121
P-0054267-T01-IM6	SOMATIC	FGFR2	FGFR2	10	2	123242177	61292438	Intron of FGFR2(-):1Kb after exon 17	Promoter of KIAA1841(+):567bp from tx start	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(2;10)(p16.1;q26.13)(chr2:g.61292438::chr10:g.123242177)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {KIAA1841:FGFR2}	0	NA	0	43	10	42
P-0054269-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72985793	72991683	Intron of ZFHX3(-):929bp before exon 3	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2362_c.2720-929del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5890	NA	0	3	6	3
P-0054280-T01-IM6	SOMATIC	SESN2	SESN2	1	1	28598974	28712374	Exon 4 of SESN2(+)	5-UTR of PHACTR4(+):22Kb before coding start	GRCh37	DUPLICATION	SESN2 (NM_031459) rearrangement: c.534:SESN2_chr1:g.28712374dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PHACTR4:SESN2}	113400	NA	0	105	10	112
P-0054281-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	9	67201315	139969367	Intron of RPS6KB2(+):150bp before exon 11	Promoter of UAP1L1(+):3Kb from tx start	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) rearrangement: t(9;11)(q34.3;q13.2)(chr9:g.139969367::chr11:g.67201315)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {UAP1L1:RPS6KB2}	0	NA	1	49	10	48
P-0054281-T01-IM6	SOMATIC	ALK	ALK	2	2	29447021	29452730	Intron of ALK(-):627bp before exon 20	Intron of ALK(-):798bp before exon 16	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.2633-798_c.3173-627del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	5709	NA	0	10	10	11
P-0054384-T01-IM6	SOMATIC	STAT3	STAT3	17	15	40498780	41147052	Intron of STAT3(-):49bp before exon 3	Intron of SPINT1(+):165bp after exon 8	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(15;17)(q15.1;q21.2)(chr15:g.41147052::chr17:g.40498780)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0054384-T01-IM6	SOMATIC	RTEL1	RTEL1	20	10	62324637	88477354	Intron of RTEL1(+):1bp after exon 30	Intron of LDB3(+):366bp before exon 10	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(10;20)(q23.2;q13.33)(chr10:g.88477354::chr20:g.62324637)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	27	10	27
P-0054388-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72827970	73060801	Exon 9 of ZFHX3(-)	5-UTR of ZFHX3(-):240Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.8611:ZFHX3_chr16:g.73060801del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	232831	NA	0	111	10	118
P-0054389-T01-IM6	SOMATIC	CIC	CIC	19	13	42794613	66120068	Exon 10 of CIC(+)	IGR: 757Kb before PCDH9(-)	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(13;19)(q21.32;q13.2)(chr13:g.66120068::chr19:g.42794613)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	10	36
P-0054389-T01-IM6	SOMATIC	FAT1	FAT1	4	4	181249290	187628729	IGR: 736Kb before LINC00290(-)	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.2253:FAT1_chr4:g.181249290del	PRECISE		MANUAL_OK	3to5	-	6379439	NA	0	6	6	6
P-0054391-T01-IM6	SOMATIC	H3F3B	MRPL38	17	17	73775133	73894960	Exon 2 of H3F3B(-)	Exon 9 of MRPL38(-)	GRCh37	DUPLICATION	H3F3B (NM_005324) - MRPL38 (NM_032478) rearrangement: c.123:H3F3B_c.1114:MRPL38dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {H3F3B:MRPL38}	119827	NA	0	95	10	99
P-0054391-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739876	1808789	Intron of TACC3(+):447bp after exon 10	Intron of FGFR3(+):53bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-54:FGFR3_c.1941+447:TACC3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68913	NA	0	133	0	156
P-0054392-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52623295	52682910	Intron of PBRM1(-):24bp before exon 19	Intron of PBRM1(-):452bp before exon 8	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.715-452_c.2780-24del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 11 exons : out of frame	59615	NA	0	6	0	6
P-0054395-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156851300	237273981	Exon 17 of NTRK1(+)	Intron of RYR2(+):68Kb after exon 1	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.2257:NTRK1_chr1:g.237273981inv	PRECISE		MANUAL_OK	5to5	-	80422681	NA	0	11	10	11
P-0054409-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94906503	94908660	Exon 10 of SESN3(-)	Intron of SESN3(-):1bp after exon 9	GRCh37	DELETION	SESN3 (NM_144665) rearrangement: c.1392+2_c.1395del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2157	NA	0	8	10	8
P-0054409-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94908801	94910878	Exon 9 of SESN3(-)	Intron of SESN3(-):4bp after exon 8	GRCh37	DELETION	SESN3 (NM_144665) rearrangement: c.1247+5_c.1253del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2077	NA	0	5	8	5
P-0054409-T01-IM6	SOMATIC	DNMT1	RAVER1	19	19	10250382	10432757	Exon 33 of DNMT1(-)	Intron of RAVER1(-):463bp before exon 7	GRCh37	DUPLICATION	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.3870:DNMT1_c.1225-463:RAVER1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT1:RAVER1}	182375	NA	0	11	10	11
P-0054415-T01-IM6	SOMATIC	MLH1	TRANK1	3	3	36940417	37053574	Intron of TRANK1(-):182bp after exon 3	Exon 8 of MLH1(+)	GRCh37	INVERSION	MLH1 (NM_000249) - TRANK1 (NM_014831) rearrangement: c.661:MLH1_c.301+183:TRANK1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MLH1:TRANK1}	113157	NA	0	3	4	3
P-0054416-T01-IM6	SOMATIC	LYN	LYN	8	8	56859023	56860500	Exon 3 of LYN(+)	Intron of LYN(+):218bp after exon 4	GRCh37	DELETION	LYN (NM_002350) rearrangement: c.149_c.284+218del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1477	NA	0	2	4	2
P-0054445-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39834004	42875935	Intron of ERG(-):16Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3942:TMPRSS2_c.19-16460:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3041931	NA	0	92	10	111
P-0054459-T01-IM6	SOMATIC	TOP1	TOP1	20	20	39672461	39742754	Intron of TOP1(+):14Kb after exon 2	Exon 15 of TOP1(+)	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: c.58+14366_c.1597inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	70293	NA	0	70	10	70
P-0054459-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971156	22104170	Exon 2 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):17Kb before coding start	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.245:CDKN2A_chr9:g.22104170inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CDKN2B-AS1:CDKN2A}	133014	NA	0	93	10	99
P-0053946-T03-IM6	SOMATIC	TSC2	TSC2	16	16	2129183	8294003	Exon 27 of TSC2(+)	IGR: 283Kb before TMEM114(-)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.3117:TSC2_chr16:g.8294003del	PRECISE		MANUAL_OK	3to5	-	6164820	NA	0	15	10	15
P-0053969-T01-IM6	SOMATIC	TRAP1	CREBBP	16	16	3755151	3807811	Intron of TRAP1(-):12Kb after exon 1	Exon 18 of CREBBP(-)	GRCh37	DUPLICATION	TRAP1 (NM_016292) - CREBBP (NM_004380) rearrangement: c.88+12271:TRAP1_c.3608:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAP1:CREBBP}	52660	NA	0	2	8	4
P-0054236-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591151	67612137	Exon 13 of PIK3R1(+)	IGR: 24Kb before PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1744:PIK3R1_chr5:g.67612137del	PRECISE		MANUAL_OK	3to5	-	20986	NA	0	28	10	28
P-0054397-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139399188	139413383	Exon 26 of NOTCH1(-)	Intron of NOTCH1(-):107bp before exon 6	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.866-107_c.4955inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	14195	NA	0	80	10	105
P-0054399-T01-IM6	SOMATIC	KMT2D	KMT2D	X	12	21014368	49438109	IGR: 378Kb before CNKSR2(+)	Intron of KMT2D(-):22bp before exon 21	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(12;X)(q13.12;p22.12)(chr12:g.49438109::chrX:g.21014368)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	92	10	93
P-0054401-T01-IM6	SOMATIC	B2M	B2M	15	15	44999558	45008521	IGR: 4Kb before B2M(+)	Intron of B2M(+):5bp before exon 3	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.347-6:B2M_chr15:g.44999558del	PRECISE		MANUAL_OK	3to5	-	8963	NA	0	6	10	6
P-0054401-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89737213	89824983	Promoter of SPATA33(+):13Kb from tx start	Intron of FANCA(-):1bp after exon 30	GRCh37	INVERSION	FANCA (NM_000135) rearrangement: c.2981+2:FANCA_chr16:g.89737213inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {FANCA:SPATA33}	87770	NA	0	36	10	38
P-0054408-T01-IM6	SOMATIC	EML4	ALK	2	2	29446902	42553032	Intron of ALK(-):508bp before exon 20	Intron of EML4(+):261bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-262:EML4_c.3173-508:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13106130	NA	0	48	10	48
P-0015914-T01-IM6	SOMATIC	MSI2	MSI2	17	17	55334155	117316023	Exon 1 of MSI2(+)	IGR: 19Kb before CD2(+)	GRCh37	TRANSLOCATION	MSI2 (NM_138962) rearrangement: t(17;17)(p13.1;q22)(chr17:g.117316023::chr17:g.55334155)	PRECISE		MANUAL_OK	3to3	-	0	NA	NA	54	10	NA
P-0019560-T01-IM6	SOMATIC	EML4	ALK	2	2	29447952	42540223	Intron of ALK(-):374bp after exon 19	Intron of EML4(+):3Kb before exon 17	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-16 with ALK exons 20-29): c.1968-2879:EML4_c.3172+375:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EML4:ALK}	13092271	NA	0	93	10	94
P-0022650-T01-IM6	SOMATIC	RB1	RB1	13	13	49035323	49038986	Intron of RB1(+):1Kb after exon 20	Intron of RB1(+):147bp before exon 22	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.2106+1354_c.2212-148del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	3663	NA	0	35	10	40
P-0004593-T04-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55153819	55155659	Intron of PDGFRA(+):111bp after exon 19	Intron of PDGFRA(+):378bp after exon 21	GRCh37	DELETION	PDGFRA (NM_006206) Rearrangement : c.2674+111_c.2880+378del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1840	NA	0	38	10	39
P-0012913-T02-IM6	SOMATIC	EML4	ALK	2	2	29446965	42479508	Intron of ALK(-):571bp before exon 20	Intron of EML4(+):4Kb before exon 3	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.209-4133:EML4_c.3173-571:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13032543	NA	0	48	10	48
P-0015985-T03-IM6	SOMATIC	CAPZA2	BRAF	7	7	116527243	140491425	Intron of CAPZA2(+):937bp before exon 2	Intron of BRAF(-):3Kb after exon 8	GRCh37	INVERSION	CAPZA2 (NM_006136) - BRAF (NM_004333) fusion: c.40-938:CAPZA2_c.1140+2683:BRAFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CAPZA2:BRAF}	23964182	NA	0	10	0	10
P-0016930-T02-IM6	SOMATIC	FLT4	FLT4	5	5	180042572	180043372	Intron of FLT4(-):794bp after exon 23	Exon 23 of FLT4(-)	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.3214_c.3219+795del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	800	NA	11	12	9	13
P-0031005-T03-IM6	SOMATIC	RICTOR	RICTOR	5	5	38950470	44977508	Exon 31 of RICTOR(-)	IGR: 168Kb before MRPS30(+)	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: c.3480:RICTOR_chr5:g.44977508del	PRECISE		MANUAL_OK	3to5	-	6027038	NA	0	28	10	28
P-0031393-T04-IM6	SOMATIC	CYB5R3	EWSR1	22	22	29687336	43030399	Intron of EWSR1(+):217bp before exon 10	Intron of CYB5R3(-):2Kb after exon 3	GRCh37	INVERSION	CYB5R3 (NM_001171660) - EWSR1 (NM_013986) rearrangement: c.252+2322:CYB5R3_c.993-218:EWSR1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CYB5R3:EWSR1}	13343063	NA	0	19	10	28
P-0035767-T04-IM6	SOMATIC	ETV6	NTRK3	15	12	88505787	12029143	Intron of NTRK3(-):22Kb before exon 15	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12029143::chr15:g.88505787)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	127	10	127
P-0040533-T02-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46508673	46511557	3-UTR of PIK3R3(-):671bp after coding stop	Intron of PIK3R3(-):32bp after exon 9	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.1187+33:PIK3R3_chr1:g.46508673del	PRECISE		MANUAL_OK	3to5	-	2884	NA	0	9	10	10
P-0040533-T02-IM6	SOMATIC	ELF3	ELF3	6	1	21341871	201982562	IGR: 144Kb before LINC00581(-)	Intron of ELF3(+):136bp after exon 7	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;6)(q32.1;p22.3)(chr1:g.201982562::chr6:g.21341871)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	18	0	15
P-0045363-T02-IM6	SOMATIC	TPM1	ALK	15	2	63358833	29446514	Intron of TPM1(+):4Kb after exon 8	Intron of ALK(-):120bp before exon 20	GRCh37	TRANSLOCATION	TPM1 (NM_001018020) - ALK (NM_004304) fusion: t(2;15)(p23.2;q22.2)(chr2:g.29446514::chr15:g.63358833)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TPM1:ALK}	0	NA	0	67	10	65
P-0045878-T02-IM6	SOMATIC	TCF3	TCF3	19	19	1412534	1611769	Intron of DAZAP1(+):5Kb after exon 1	Exon 18 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1893:TCF3_chr19:g.1412534del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	199235	NA	0	56	10	56
P-0050495-T02-IM6	SOMATIC	RYBP	RYBP	3	3	72427669	76393323	Exon 4 of RYBP(-)	IGR: 606Kb before MIR4273(+)	GRCh37	INVERSION	RYBP (NM_012234) rearrangement: c.524:RYBP_chr3:g.76393323inv	PRECISE		MANUAL_OK	3to3	-	3965654	NA	0	25	10	25
P-0050495-T02-IM6	SOMATIC	EPHA3	EPHA3	3	3	89466557	89468357	Intron of EPHA3(+):2Kb before exon 11	Exon 11 of EPHA3(+)	GRCh37	DELETION	EPHA3 (NM_005233) rearrangement: c.1889-1798_c.1891del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1800	NA	0	12	10	12
P-0052352-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1739267	1808764	Intron of TACC3(+):57bp before exon 10	Intron of FGFR3(+):78bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-79:FGFR3_c.1837-58:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69497	NA	0	79	10	82
P-0054468-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41226442	45723753	Exon 14 of BRCA1(-)	IGR: 3Kb before KPNB1(+)	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.4581:BRCA1_chr17:g.45723753inv	PRECISE		MANUAL_OK	3to3	-	4497311	NA	0	8	10	8
P-0054474-T01-IM6	SOMATIC	PTPRS	PTPRS	19	11	5223311	64731853	Intron of PTPRS(-):3bp before exon 18	5-UTR of C11orf85(-):25Kb before coding start	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(11;19)(q13.1;p13.3)(chr11:g.64731853::chr19:g.5223311)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	21	10	36
P-0054474-T01-IM6	SOMATIC	CDH1	CDH1	22	16	29025157	68847470	Intron of TTC28(-):382bp after exon 2	Intron of CDH1(+):72bp after exon 9	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(16;22)(q22.1;q12.1)(chr16:g.68847470::chr22:g.29025157)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	22	10	21
P-0054475-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29688387	32414704	Intron of EWSR1(+):89bp before exon 12	Intron of WT1(-):403bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414704::chr22:g.29688387)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	136	10	135
P-0054484-T01-IM6	SOMATIC	NCOR1	NCOR1	17	11	16004958	44543161	Exon 20 of NCOR1(-)	IGR: 44Kb before CD82(+)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(11;17)(p11.2;p11.2)(chr11:g.44543161::chr17:g.16004958)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	59	10	73
P-0054494-T01-IM6	SOMATIC	MSH6	MSH6	10	2	95336558	48032150	Intron of FFAR4(+):582bp after exon 2	Exon 6 of MSH6(+)	GRCh37	TRANSLOCATION	MSH6 (NM_000179) rearrangement: t(2;10)(p16.3;q23.33)(chr2:g.48032150::chr10:g.95336558)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	15	10	14
P-0054496-T01-IM6	SOMATIC	STAT5B	STAT5B	17	17	40346919	40354671	Promoter of GHDC(-):6Kb from tx start	Intron of STAT5B(-):103bp after exon 17	GRCh37	DELETION	STAT5B (NM_012448) rearrangement: c.2129+104:STAT5B_chr17:g.40346919del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {STAT5B:GHDC}	7752	NA	0	20	10	49
P-0054496-T01-IM6	SOMATIC	DNAJB1	DNAJB1	19	19	9132105	14629133	IGR: 72Kb before OR1M1(+)	Exon 1 of DNAJB1(-)	GRCh37	INVERSION	DNAJB1 (NM_006145) rearrangement: c.29:DNAJB1_chr19:g.9132105inv	PRECISE		MANUAL_OK	3to3	-	5497028	NA	0	3	10	5
P-0054497-T01-IM6	SOMATIC	WT1	WT1	11	11	32414234	32416530	Exon 8 of WT1(-)	Intron of WT1(-):1Kb after exon 7	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.1249+1273_c.1317del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2296	NA	0	5	10	5
P-0054497-T01-IM6	SOMATIC	SRC	SRC	20	20	6760346	36031107	3-UTR of BMP2(+):10Kb after coding stop	Intron of SRC(+):44bp before exon 13	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.1271-45:SRC_chr20:g.6760346inv	PRECISE		MANUAL_OK	5to5	-	29270761	NA	0	6	8	7
P-0054497-T01-IM6	SOMATIC	CD74	ROS1	6	5	117659373	149783252	Intron of ROS1(-):870bp before exon 31	Intron of CD74(-):377bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783252::chr6:g.117659373)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	9	0	15
P-0054503-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39976221	42871992	3-UTR of ERG(-):57Kb after coding stop	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1876:TMPRSS2_chr21:g.39976221del	PRECISE		MANUAL_OK	3to5	-	2895771	NA	0	27	10	35
P-0054506-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877018	42874701	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4585:TMPRSS2_c.40-59474:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997683	NA	0	126	10	139
P-0054521-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872057	42873849	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3733:TMPRSS2_c.40-54513:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3001792	NA	0	53	10	55
P-0054524-T01-IM6	SOMATIC	DUSP4	SEPT9	17	8	75348040	29207423	Intron of SEPT9(+):32Kb after exon 1	Exon 1 of DUSP4(-)	GRCh37	TRANSLOCATION	DUSP4 (NM_001394) - SEPT9 (NM_001113491) rearrangement: t(8;17)(p12;q25.3)(chr8:g.29207423::chr17:g.75348040)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DUSP4:SEPT9}	0	NA	0	29	0	36
P-0054527-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39842433	42868216	Intron of ERG(-):25Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1711:TMPRSS2_c.19-24889:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3025783	NA	0	26	10	27
P-0054527-T01-IM6	SOMATIC	EWSR1	EWSR1	22	18	29687984	47357718	Intron of EWSR1(+):141bp before exon 11	Intron of MYO5B(-):4Kb after exon 39	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(18;22)(q21.1;q12.2)(chr18:g.47357718::chr22:g.29687984)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	21
P-0054542-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1808100	1812983	Intron of FGFR3(+):46bp after exon 15	Promoter of FGFR3(+):18Kb from tx start	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.2030+46:FGFR3_chr4:g.1812983inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4883	NA	0	10	10	10
P-0054547-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	37894049	38064109	Intron of MIPOL1(+):2Kb after exon 13	Exon 1 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.69:FOXA1_chr14:g.37894049del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	170060	NA	0	7	10	7
P-0054554-T01-IM6	SOMATIC	NUP93	NUP93	16	13	56865735	51689720	Intron of NUP93(+):18bp before exon 11	3-UTR of LINC00371(-):57Kb after coding stop	GRCh37	TRANSLOCATION	NUP93 (NM_014669) rearrangement: t(13;16)(q14.3;q13)(chr13:g.51689720::chr16:g.56865735)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	28	10	27
P-0054554-T01-IM6	SOMATIC	TRAF7	TRAF7	16	2	2225963	51136872	Intron of TRAF7(+):9bp after exon 18	Intron of NRXN1(-):13Kb after exon 4	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(2;16)(p16.3;p13.3)(chr2:g.51136872::chr16:g.2225963)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	49	10	50
P-0054600-T01-IM6	SOMATIC	AKT1	AKT1	14	14	105242124	105242995	Exon 5 of AKT1(-)	Exon 4 of AKT1(-)	GRCh37	DELETION	AKT1 (NM_001014431) rearrangement: c.287+1_c.300del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	871	NA	0	6	0	8
P-0054645-T01-IM6	SOMATIC	TRIM4	MET	7	7	99499345	116413410	Intron of TRIM4(-):1Kb after exon 6	Intron of MET(+):1Kb after exon 14	GRCh37	INVERSION	TRIM4 (NM_033091) - MET (NM_000245) fusion: c.841+1496:TRIM4_c.3028+1367:METinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TRIM4:MET}	16914065	NA	0	62	10	110
P-0054649-T01-IM6	SOMATIC	TP53	TP53	17	17	7573152	7949707	Intron of TP53(-):144bp before exon 11	Intron of ALOX15B(+):278bp before exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1101-144:TP53_chr17:g.7949707del	IMPPRECISE		MANUAL_OK	3to5	-	376555	NA	0	30	0	30
P-0008099-T03-IM6	SOMATIC	KDM5A	KDM5A	12	12	401994	404333	Exon 27 of KDM5A(-)	Intron of KDM5A(-):405bp after exon 26	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.4455+406_c.4797inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2339	NA	0	4	10	4
P-0037834-T02-IM6	SOMATIC	ETV6	ETV6	12	12	11850121	12006543	Intron of ETV6(+):47Kb after exon 1	Intron of ETV6(+):48bp after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.33+47027_c.463+48dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	156422	NA	0	24	10	24
P-0037834-T02-IM6	SOMATIC	BRIP1	C10orf90	17	10	59878659	128177587	Exon 8 of BRIP1(-)	Intron of C10orf90(-):15Kb after exon 3	GRCh37	TRANSLOCATION	BRIP1 (NM_032043) - C10orf90 (NM_001004298) rearrangement: t(10;17)(q26.2;q23.2)(chr10:g.128177587::chr17:g.59878659)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRIP1:C10orf90}	0	NA	0	36	10	36
P-0037834-T02-IM6	SOMATIC	DNMT1	DNMT1	19	19	10267093	53065226	Exon 17 of DNMT1(-)	IGR: 8Kb before ZNF701(+)	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1325:DNMT1_chr19:g.53065226del	PRECISE		MANUAL_OK	3to5	-	42798133	NA	0	19	10	19
P-0037834-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44761938	44950141	Intron of KDM6A(+):29Kb after exon 2	Intron of KDM6A(+):32bp after exon 26	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.225+28705_c.3878+32dup	PRECISE		MANUAL_OK	5to3	Duplication of 24 exons : out of frame	188203	NA	0	42	10	44
P-0050545-T02-IM6	SOMATIC	IRS1	IRS1	2	2	227600665	227659848	3-UTR of IRS1(-):59Kb after coding stop	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) rearrangement: c.3607:IRS1_chr2:g.227600665inv	PRECISE		MANUAL_OK	3to3	-	59183	NA	0	29	10	29
P-0053877-T02-IM6	SOMATIC	HIST1H3J	HIST1H3J	12	6	123149428	27858403	IGR: 36Kb before HCAR2(-)	Exon 1 of HIST1H3J(-)	GRCh37	TRANSLOCATION	HIST1H3J (NM_003535) rearrangement: t(6;12)(p22.1;q24.31)(chr6:g.27858403::chr12:g.123149428)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	9
P-0054440-T02-IM6	SOMATIC	CD74	ROS1	6	5	117646088	149782403	Intron of ROS1(-):510bp before exon 34	Intron of CD74(-):215bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782403::chr6:g.117646088)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	5	0	5
P-0054567-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877926	42876915	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+2962:TMPRSS2_c.40-60382:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2998989	NA	0	106	10	109
P-0054569-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15300306	21587888	Intron of NOTCH3(-):67bp before exon 7	Intron of ZNF493(+):42bp before exon 2	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1037-67:NOTCH3_chr19:g.21587888del	PRECISE		MANUAL_OK	3to5	-	6287582	NA	0	75	10	92
P-0054573-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266050	41266615	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.47_c.412del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	565	NA	0	9	10	9
P-0054586-T01-IM6	SOMATIC	MPND	PIK3R2	19	19	4357196	18274011	Intron of MPND(+):53bp before exon 7	Intron of PIK3R2(+):54bp after exon 10	GRCh37	DELETION	MPND (NM_032868) - PIK3R2 (NM_005027) rearrangement: c.997-54:MPND_c.1290+54:PIK3R2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MPND:PIK3R2}	13916815	NA	0	22	10	23
P-0054594-T01-IM6	SOMATIC	CBL	CBL	11	11	119148567	119150760	Intron of CBL(+):13bp after exon 7	Intron of CBL(+):1Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+13_c.1431+1337del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2193	NA	0	5	7	5
P-0054597-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67024899	67201662	3-UTR of KDM2A(+):136Kb after coding stop	Intron of RPS6KB2(+):6bp before exon 12	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.970-7:RPS6KB2_chr11:g.67024899del	PRECISE		MANUAL_OK	3to5	-	176763	NA	0	3	4	3
P-0054597-T01-IM6	SOMATIC	IDH2	IDH2	15	15	90628618	90630343	Exon 8 of IDH2(-)	Exon 7 of IDH2(-)	GRCh37	DELETION	IDH2 (NM_002168) rearrangement: c.967+1_c.969del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1725	NA	0	4	7	4
P-0054597-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5069809	5070734	Intron of JAK2(+):115bp before exon 12	Intron of JAK2(+):682bp after exon 12	GRCh37	INVERSION	JAK2 (NM_004972) rearrangement: c.1514-116_c.1641+682inv	PRECISE		MANUAL_OK	5to5	-	925	NA	0	10	10	10
P-0054599-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	17	7519367	7983547	5-UTR of SHBG(+):14Kb before coding start	Intron of ALOX12B(-):5bp after exon 6	GRCh37	DELETION	ALOX12B (NM_001139) rearrangement: c.754+6:ALOX12B_chr17:g.7519367del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	464180	NA	0	46	10	47
P-0054599-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31023569	31024387	Exon 12 of ASXL1(+)	Exon 12 of ASXL1(+)	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.3054_c.3872inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	818	NA	0	23	10	23
P-0054615-T01-IM6	SOMATIC	ETV6	ETV6	12	5	12037145	143717098	Intron of ETV6(+):233bp before exon 6	Intron of KCTD16(+):130Kb after exon 3	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(5;12)(q31.3;p13.2)(chr5:g.143717098::chr12:g.12037145)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	42	10	41
P-0054646-T01-IM6	SOMATIC	LST1	NOTCH4	6	6	31555377	32180497	Intron of LST1(+):40bp before exon 3	Intron of NOTCH4(-):93bp before exon 17	GRCh37	INVERSION	LST1 (NM_205838) - NOTCH4 (NM_004557) rearrangement: c.19+282:LST1_c.2527-93:NOTCH4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {LST1:NOTCH4}	625120	NA	0	14	10	14
P-0054648-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30949837	31020746	Intron of ASXL1(+):3Kb after exon 1	Exon 10 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.57+3202_c.1043dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	70909	NA	0	6	10	7
P-0054648-T01-IM6	SOMATIC	CASP8	MAGI2	7	2	77901717	202151208	Intron of MAGI2(-):16Kb before exon 10	Exon 9 of CASP8(+)	GRCh37	TRANSLOCATION	CASP8 (NM_001080125) - MAGI2 (NM_012301) rearrangement: t(2;7)(q33.1;q21.11)(chr2:g.202151208::chr7:g.77901717)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CASP8:MAGI2}	0	NA	0	8	0	10
P-0025097-T03-IM6	SOMATIC	CIC	CIC	19	7	42794661	100979016	Exon 10 of CIC(+)	IGR: 22Kb before IFT22(-)	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(7;19)(q22.1;q13.2)(chr7:g.100979016::chr19:g.42794661)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	9	6
P-0025097-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39874654	42875596	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4281:TMPRSS2_c.40-57110:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000942	NA	0	108	10	110
P-0040976-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55098494	55222447	Intron of EGFR(+):11Kb after exon 1	Intron of EGFR(+):602bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+11436_c.889+602del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	123953	NA	0	5	0	5
P-0049509-T02-IM6	SOMATIC	ALK	ALK	2	2	29447272	67748566	Intron of ALK(-):878bp before exon 20	IGR: 124Kb before ETAA1(+)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3173-878:ALK_chr2:g.67748566del	PRECISE		MANUAL_OK	3to5	-	38301294	NA	0	22	10	22
P-0052865-T03-IM6	SOMATIC	ROS1	ROS1	6	6	117737289	117795212	Intron of ROS1(-):131bp after exon 3	IGR: 9Kb before DCBLD1(+)	GRCh37	DUPLICATION	ROS1 (NM_002944) rearrangement: c.228+132:ROS1_chr6:g.117795212dup	PRECISE		MANUAL_OK	5to3	-	57923	NA	0	5	5	6
P-0053434-T02-IM6	SOMATIC	PTPN11	PTPN11	12	12	109276428	112926273	5-UTR of DAO(+):2Kb before coding start	Exon 12 of PTPN11(+)	GRCh37	DELETION	PTPN11 (NM_002834) rearrangement: c.1406:PTPN11_chr12:g.109276428del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DAO:PTPN11}	3649845	NA	0	11	10	11
P-0054633-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12017759	12028726	Intron of ETV6(+):5Kb before exon 5	Intron of ETV6(+):6Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.464-4599_c.1009+5823dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	10967	NA	0	2	7	2
P-0054636-T01-IM6	SOMATIC	REL	REL	6	2	22149745	61145813	5-UTR of CASC15(+):45Kb before coding start	Intron of REL(+):72bp after exon 7	GRCh37	TRANSLOCATION	REL (NM_002908) rearrangement: t(2;6)(p16.1;p22.3)(chr2:g.61145813::chr6:g.22149745)	IMPPRECISE		MANUAL_OK	5to3	Transcript Fusion {REL:CASC15}	0	NA	0	5	0	5
P-0054636-T01-IM6	SOMATIC	EGFL7	EGFL7	9	9	139549529	139563004	IGR: 4Kb before EGFL7(+)	Intron of EGFL7(+):4bp before exon 3	GRCh37	INVERSION	EGFL7 (NM_201446) rearrangement: c.81-5:EGFL7_chr9:g.139549529inv	PRECISE		MANUAL_OK	5to5	-	13475	NA	0	92	10	125
P-0054637-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11196025	11199554	Intron of MTOR(-):2Kb before exon 37	Intron of MTOR(-):35bp after exon 35	GRCh37	DUPLICATION	MTOR (NM_004958) rearrangement: c.4998+36_c.5131-1502dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	3529	NA	0	25	10	25
P-0054637-T01-IM6	SOMATIC	EPCAM	EPCAM	2	2	47606131	47612240	Exon 6 of EPCAM(+)	Intron of EPCAM(+):64bp before exon 8	GRCh37	DUPLICATION	EPCAM (NM_002354) rearrangement: c.595_c.859-65dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6109	NA	0	72	10	75
P-0054652-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877183	42874927	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4811:TMPRSS2_c.40-59639:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997744	NA	0	44	10	44
P-0054658-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16262546	16263443	Exon 11 of SPEN(+)	Intron of SPEN(+):214bp before exon 12	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.9811_c.10027-215del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	897	NA	0	8	0	9
P-0054659-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186505807	186507967	Intron of EIF4A2(+):136bp after exon 10	Promoter of EIF4A2(+):7Kb from tx start	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.1079+136:EIF4A2_chr3:g.186507967del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2160	NA	0	6	9	6
P-0027256-T02-IM6	SOMATIC	FOXA1	FOXA1	14	8	38061006	126543709	Exon 2 of FOXA1(-)	IGR: 99Kb before TRIB1(+)	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) rearrangement: t(8;14)(q24.13;q21.1)(chr8:g.126543709::chr14:g.38061006)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	116	10	125
P-0018986-T03-IM6	SOMATIC	SRC	SRC	20	20	36026216	36122719	Exon 9 of SRC(+)	IGR: 23Kb before BLCAP(-)	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.818:SRC_chr20:g.36122719inv	IMPPRECISE		MANUAL_OK	5to5	-	96503	NA	0	50	0	62
P-0037701-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39798230	42869521	Intron of ERG(-):3Kb before exon 3	Intron of TMPRSS2(-):524bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+525:TMPRSS2_c.237-2747:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3071291	NA	0	131	0	137
P-0054669-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151853058	151864671	Exon 46 of KMT2C(-)	Intron of KMT2C(-):208bp before exon 42	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.9518-208_c.11897inv	IMPPRECISE		MANUAL_OK	3to3	-	11613	NA	0	5	0	5
P-0054671-T01-IM6	SOMATIC	CDC73	CDC73	1	1	192859096	193104395	IGR: 46Kb before LINC01032(-)	Intron of CDC73(+):125bp before exon 4	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.308-126:CDC73_chr1:g.192859096del	PRECISE		MANUAL_OK	3to5	-	245299	NA	0	12	10	13
P-0054673-T01-IM6	SOMATIC	EIF3J	B2M	15	15	44834079	45008515	Intron of EIF3J(+):4Kb after exon 2	Intron of B2M(+):11bp before exon 3	GRCh37	DELETION	EIF3J (NM_003758) - B2M (NM_004048) rearrangement: c.147+4454:EIF3J_c.347-12:B2Mdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EIF3J:B2M}	174436	NA	0	9	8	10
P-0054692-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39828714	42875604	Intron of ERG(-):11Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4273:TMPRSS2_c.19-11170:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3046890	NA	0	25	10	27
P-0054694-T01-IM6	SOMATIC	PAX8	PAX8	12	2	68397853	113987500	5-UTR of IFNG-AS1(+):17Kb before coding start	Intron of PAX8(-):3Kb before exon 10	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;12)(q13;q15)(chr2:g.113987500::chr12:g.68397853)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {IFNG-AS1:PAX8}	0	NA	0	20	10	20
P-0054694-T01-IM6	SOMATIC	ETV6	ETV6	12	9	12025343	122279686	Intron of ETV6(+):2Kb after exon 5	IGR: 351Kb before BRINP1(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(9;12)(q33.1;p13.2)(chr9:g.122279686::chr12:g.12025343)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	10	32
P-0054694-T01-IM6	SOMATIC	BLM	BLM	15	15	52920598	91308554	Intron of FAM214A(-):15Kb before exon 3	Exon 9 of BLM(+)	GRCh37	DELETION	BLM (NM_000057) rearrangement: c.2103:BLM_chr15:g.52920598del	PRECISE		MANUAL_OK	3to5	-	38387956	NA	0	6	10	6
P-0054679-T01-IM6	SOMATIC	ZFHX3	ZFHX3	17	16	46833832	72845807	IGR: 6Kb before TTLL6(-)	Exon 6 of ZFHX3(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(16;17)(q22.2;q21.32)(chr16:g.72845807::chr17:g.46833832)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	12	0	12
P-0054680-T01-IM6	SOMATIC	JAK3	JAK3	19	19	17948692	17950854	Intron of JAK3(-):48bp after exon 12	Intron of JAK3(-):184bp after exon 9	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.1254+185_c.1701+49inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2162	NA	0	49	10	54
P-0054687-T01-IM6	SOMATIC	NCOR1	NCOR1	17	1	15976821	170229099	Exon 28 of NCOR1(-)	IGR: 11Kb before LINC01142(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(1;17)(q24.2;p12)(chr1:g.170229099::chr17:g.15976821)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0054696-T01-IM6	SOMATIC	KMT2D	KMT2D	12	10	49437442	34675110	Exon 23 of KMT2D(-)	Intron of PARD3(-):2Kb before exon 8	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(10;12)(p11.21;q13.12)(chr10:g.34675110::chr12:g.49437442)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	102	10	126
P-0054697-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	28300570	29687570	Intron of PITPNB(-):6Kb after exon 3	Exon 10 of EWSR1(+)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.1009:EWSR1_chr22:g.28300570del	PRECISE		MANUAL_OK	3to5	-	1387000	NA	0	10	10	10
P-0054701-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162622141	162668096	Intron of PARK2(-):21bp after exon 4	Intron of PARK2(-):15Kb after exon 3	GRCh37	DUPLICATION	PARK2 (NM_004562) rearrangement: c.412+15461_c.534+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	45955	NA	0	6	10	6
P-0054706-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52646523	52661202	Intron of PBRM1(-):3Kb before exon 17	Intron of PBRM1(-):86bp after exon 14	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1541+87_c.1925-2552del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	14679	NA	0	13	10	13
P-0054707-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72770824	72845499	IGR: 46Kb before ZFHX3(-)	Exon 7 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3841:ZFHX3_chr16:g.72770824del	PRECISE		MANUAL_OK	3to5	-	74675	NA	0	55	10	55
P-0054707-T01-IM6	SOMATIC	STARD3	ERBB2	17	17	37818780	37872628	Intron of STARD3(+):183bp after exon 13	Exon 13 of ERBB2(+)	GRCh37	DELETION	STARD3 (NM_006804) - ERBB2 (NM_004448) fusion: c.1233+183:STARD3_c.1588:ERBB2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STARD3:ERBB2}	53848	NA	0	60	10	60
P-0054707-T01-IM6	SOMATIC	ERBB2	GRB7	17	17	37883299	37901778	Intron of ERBB2(+):43bp after exon 25	Exon 11 of GRB7(+)	GRCh37	DELETION	ERBB2 (NM_004448) - GRB7 (NM_005310) fusion: c.3159+43:ERBB2_c.1196:GRB7del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ERBB2:GRB7}	18479	NA	0	5	10	5
P-0054707-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41277842	41956837	Exon 12 of CTNNB1(+)	Intron of ULK4(-):631bp after exon 8	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.1806:CTNNB1_chr3:g.41956837del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	678995	NA	0	2	3	2
P-0054708-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486516	63557025	Intron of NAB2(+):152bp after exon 3	IGR: 20Kb before AVPR1A(-)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1091+152:NAB2_chr12:g.63557025inv	PRECISE		MANUAL_OK	5to5	-	6070509	NA	0	99	10	142
P-0054708-T01-IM6	SOMATIC	MDM2	RFX4	12	12	69229639	107035811	Exon 9 of MDM2(+)	Intron of RFX4(+):3Kb after exon 3	GRCh37	DELETION	MDM2 (NM_002392) - RFX4 (NM_001206691) rearrangement: c.715:MDM2_c.218+2641:RFX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MDM2:RFX4}	37806172	NA	0	9	10	9
P-0054708-T01-IM6	SOMATIC	PTPN11	CHST11	12	12	105076574	112892462	Intron of CHST11(+):74Kb before exon 3	Exon 5 of PTPN11(+)	GRCh37	DUPLICATION	PTPN11 (NM_002834) - CHST11 (NM_018413) rearrangement: c.620:PTPN11_c.205-74153:CHST11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PTPN11:CHST11}	7815888	NA	0	230	10	292
P-0050545-T03-IM6	SOMATIC	IRS1	IRS1	2	2	227600665	227659848	3-UTR of IRS1(-):59Kb after coding stop	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) rearrangement: c.3607:IRS1_chr2:g.227600665inv	PRECISE		MANUAL_OK	3to3	-	59183	NA	0	19	10	19
P-0054725-T01-IM6	SOMATIC	POLE	POLE	12	12	133208902	133225948	Exon 45 of POLE(-)	Exon 31 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.3949_c.6329del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17046	NA	0	43	10	43
P-0054778-T01-IM6	SOMATIC	PMS1	PMS1	2	2	190655406	190718913	5-UTR of PMS1(+):1Kb before coding start	Intron of PMS1(+):51bp before exon 9	GRCh37	INVERSION	PMS1 (NM_000534) rearrangement: c.967-52:PMS1_chr2:g.190655406inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	63507	NA	0	9	10	7
P-0054779-T01-IM6	SOMATIC	CUX2	MDM2	12	12	69230303	111694156	Intron of MDM2(+):148bp before exon 10	Intron of CUX2(+):7Kb before exon 4	GRCh37	DUPLICATION	CUX2 (NM_015267) - MDM2 (NM_002392) rearrangement: c.223-7409:CUX2_c.841-149:MDM2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CUX2:MDM2}	42463853	NA	0	18	0	18
P-0054779-T01-IM6	SOMATIC	NBN	NBN	12	8	69520693	90982551	IGR: 113Kb before CPSF6(+)	Intron of NBN(-):40bp after exon 7	GRCh37	TRANSLOCATION	NBN (NM_002485) rearrangement: t(8;12)(q21.3;q15)(chr8:g.90982551::chr12:g.69520693)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	7	0	7
P-0054784-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140478483	140486593	Intron of BRAF(-):608bp before exon 12	Intron of BRAF(-):754bp after exon 9	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.1177+755_c.1433-608inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	8110	NA	0	13	10	14
P-0054785-T01-IM6	SOMATIC	HNF1A	HNF1A	12	12	120825607	121434480	IGR: 46Kb before MSI1(-)	Exon 6 of HNF1A(+)	GRCh37	DELETION	HNF1A (NM_000545) rearrangement: c.1244:HNF1A_chr12:g.120825607del	PRECISE		MANUAL_OK	3to5	-	608873	NA	0	15	10	15
P-0054785-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39856174	42868194	Intron of ERG(-):14Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1689:TMPRSS2_c.18+14113:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3012020	NA	0	16	10	17
P-0054665-T01-IM6	SOMATIC	MAP3K14	MAP3K14	17	17	43345876	43363829	Intron of MAP3K14(-):750bp before exon 12	Exon 5 of MAP3K14(-)	GRCh37	DUPLICATION	MAP3K14 (NM_003954) rearrangement: c.1120_c.1972-750dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	17953	NA	0	75	10	85
P-0054665-T01-IM6	SOMATIC	KDR	KDR	4	4	55962378	80791482	Intron of KDR(-):17bp after exon 19	IGR: 31Kb before ANTXR2(-)	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.2728+18:KDR_chr4:g.80791482inv	PRECISE		MANUAL_OK	5to5	-	24829104	NA	0	23	10	24
P-0053877-T03-IM6	SOMATIC	HIST1H3J	HIST1H3J	12	6	123149428	27858403	IGR: 36Kb before HCAR2(-)	Exon 1 of HIST1H3J(-)	GRCh37	TRANSLOCATION	HIST1H3J (NM_003535) rearrangement: t(6;12)(p22.1;q24.31)(chr6:g.27858403::chr12:g.123149428)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	16
P-0054763-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39821622	42874788	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-4672:TMPRSS2_c.19-4078:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3053166	NA	0	6	10	6
P-0054769-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	38608838	38643742	Intron of SPRED1(+):6Kb before exon 3	Exon 7 of SPRED1(+)	GRCh37	DUPLICATION	SPRED1 (NM_152594) rearrangement: c.208-5604_c.1212dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	34904	NA	0	5	0	5
P-0054769-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	38640541	38643741	Intron of SPRED1(+):1Kb before exon 6	Exon 7 of SPRED1(+)	GRCh37	INVERSION	SPRED1 (NM_152594) rearrangement: c.583-1082_c.1211inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3200	NA	0	24	10	24
P-0002898-T06-IM6	SOMATIC	KDM5A	KDM5A	12	12	416586	432776	Intron of KDM5A(-):33bp after exon 23	Exon 15 of KDM5A(-)	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.2140_c.3930+34inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	16190	NA	0	6	8	6
P-0002898-T06-IM6	SOMATIC	AURKA	AURKA	20	2	54956623	211462757	Exon 6 of AURKA(-)	Intron of CPS1(+):1Kb before exon 15	GRCh37	TRANSLOCATION	AURKA (NM_003600) rearrangement: t(2;20)(q34;q13.2)(chr2:g.211462757::chr20:g.54956623)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0054667-T01-IM6	SOMATIC	CEP85L	ROS1	6	6	117662314	118834999	Exon 30 of ROS1(-)	Intron of CEP85L(-):2Kb before exon 6	GRCh37	DELETION	CEP85L (NM_001178035) - ROS1 (NM_002944) fusion: c.1149-2421:CEP85L_c.5063:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CEP85L:ROS1}	1172685	NA	0	39	10	40
P-0054744-T01-IM6	SOMATIC	TSHR	TSHR	14	14	81544560	81609588	Intron of TSHR(+):10Kb before exon 4	Exon 10 of TSHR(+)	GRCh37	DUPLICATION	TSHR (NM_000369) rearrangement: c.318-9738_c.1186dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	65028	NA	0	3	5	3
P-0054744-T01-IM6	SOMATIC	TP53	TP53	17	17	7573033	7575337	Intron of TP53(-):25bp before exon 11	Intron of TP53(-):1Kb before exon 10	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.994-1304_c.1101-25del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2304	NA	0	12	0	13
P-0054744-T01-IM6	SOMATIC	TERT	TERT	21	5	22152550	1295163	3-UTR of LINC00320(-):23Kb after coding stop	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;21)(p15.33;q21.1)(chr5:g.1295163::chr21:g.22152550)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	18	0	20
P-0054749-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55147585	55222350	Intron of EGFR(+):61Kb after exon 1	Intron of EGFR(+):505bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+60527_c.889+505del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	74765	NA	0	5	10	5
P-0054780-T01-IM6	SOMATIC	KMT2B	KMT2B	19	9	36212391	131327578	Exon 3 of KMT2B(+)	5-UTR of SPTAN1(+):1Kb before coding start	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(9;19)(q34.11;q13.12)(chr9:g.131327578::chr19:g.36212391)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2B:SPTAN1}	0	NA	0	5	0	5
P-0054812-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	2	42838118	205007801	Intron of TMPRSS2(-):38bp before exon 14	IGR: 206Kb before ICOS(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(2;21)(q33.3;q22.3)(chr2:g.205007801::chr21:g.42838118)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	37	10	37
P-0054814-T01-IM6	SOMATIC	HIST1H3D	HIST1H3D	6	6	26195297	26197279	Promoter of HIST1H3D(-):2Kb from tx start	Exon 2 of HIST1H3D(-)	GRCh37	INVERSION	HIST1H3D (NM_003530) rearrangement: c.200:HIST1H3D_chr6:g.26195297inv	IMPPRECISE		MANUAL_OK	3to3	-	1982	NA	0	6	0	6
P-0054815-T01-IM6	SOMATIC	ARHGEF10L	PIK3R3	1	1	17961320	46509544	Intron of ARHGEF10L(+):9bp before exon 18	Intron of PIK3R3(-):1bp before exon 10	GRCh37	INVERSION	ARHGEF10L (NM_018125) - PIK3R3 (NM_003629) rearrangement: c.1746-10:ARHGEF10L_c.1188-1:PIK3R3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ARHGEF10L:PIK3R3}	28548224	NA	0	22	10	22
P-0054816-T01-IM6	SOMATIC	MEN1	MEN1	11	11	64574471	69490711	Intron of MEN1(-):11bp after exon 6	Promoter of ORAOV1(-):10Kb from tx start	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.927+12:MEN1_chr11:g.69490711inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4916240	NA	0	5	8	5
P-0023910-T15-IM6	SOMATIC	FAT1	FAT1	4	4	29213342	187523949	IGR: 392Kb before MIR4275(+)	Intron of FAT1(-):107bp after exon 20	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.11482+108:FAT1_chr4:g.29213342inv	PRECISE		MANUAL_OK	5to5	-	158310607	NA	0	24	10	24
P-0031304-T03-IM6	SOMATIC	TET2	TET2	4	4	106195610	106196909	Intron of TET2(+):594bp before exon 11	Exon 11 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.4538-595_c.5242del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1299	NA	0	19	10	32
P-0043804-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	8533169	36212329	Intron of HNRNPM(+):488bp before exon 9	Exon 3 of KMT2B(+)	GRCh37	INVERSION	KMT2B (NM_014727) Rearrangement : c.2080:KMT2B_chr19:g.8533169 inv	PRECISE		MANUAL_OK	5to5	-	27679160	NA	0	72	10	88
P-0044573-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53243683	56088205	Intron of KDM5C(-):187bp after exon 8	IGR: 171Kb before KLF8(+)	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.1122+188:KDM5C_chrX:g.56088205inv	PRECISE		MANUAL_OK	5to5	-	2844522	NA	0	2	8	5
P-0046974-T02-IM6	SOMATIC	PIK3R2	MRI1	19	19	13880962	18274231	Intron of MRI1(+):1Kb after exon 5	Intron of PIK3R2(+):33bp after exon 11	GRCh37	DUPLICATION	PIK3R2 (NM_005027) - MRI1 (NM_001031727) rearrangement: c.1416+33:PIK3R2_c.949+1100:MRI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PIK3R2:MRI1}	4393269	NA	0	18	10	18
P-0046974-T02-IM6	SOMATIC	PLK2	PLK2	5	5	57752983	113215171	Intron of PLK2(-):24bp after exon 7	IGR: 366Kb before YTHDC2(+)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.1008+25:PLK2_chr5:g.113215171inv	PRECISE		MANUAL_OK	3to3	-	55462188	NA	0	38	10	35
P-0046974-T02-IM6	SOMATIC	NSD1	NSD1	5	5	176721402	176740468	Exon 23 of NSD1(+)	Promoter of MXD3(-):6Kb from tx start	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.7033:NSD1_chr5:g.176740468del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	19066	NA	0	13	10	29
P-0049511-T01-IM6	SOMATIC	EML4	ALK	2	2	29446991	42552703	Intron of ALK(-):597bp before exon 20	Intron of EML4(+):9bp after exon 19	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+9:EML4_c.3173-597:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13105712	NA	0	58	10	58
P-0050353-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	12	72994092	66396352	5-UTR of ZFHX3(-):173Kb before coding start	IGR: 21Kb before MIR6074(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(12;16)(q14.3;q22.2)(chr12:g.66396352::chr16:g.72994092)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	5	0	5
P-0052917-T02-IM6	SOMATIC	CALR	CALR	19	19	13050383	51297482	Exon 3 of CALR(+)	Intron of ACPT(+):231bp before exon 9	GRCh37	INVERSION	CALR (NM_004343) rearrangement: c.335:CALR_chr19:g.51297482inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	38247099	NA	0	85	10	249
P-0053984-T01-IM6	SOMATIC	NKX2	NKX2-8	14	14	36988236	37048096	Exon 2 of NKX2-1(-)	Promoter of NKX2-8(-):1Kb from tx start	GRCh37	DELETION	NKX2-1 (NM_001079668) rearrangement: c.417:NKX2-1_chr14:g.37048096del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NKX2-8:NKX2-1}	59860	NA	0	49	10	56
P-0054811-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118352612	118354270	Exon 7 of KMT2A(+)	Intron of KMT2A(+):627bp before exon 9	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.3817_c.4087-628inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1658	NA	0	17	10	27
P-0054813-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	109019097	145742762	Intron of RSPO2(-):18Kb before exon 3	Intron of RECQL4(-):35bp after exon 3	GRCh37	DELETION	RECQL4 (NM_004260) rearrangement: c.213+36:RECQL4_chr8:g.109019097del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RECQL4:RSPO2}	36723665	NA	0	52	10	53
P-0054813-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30681365	45288971	Intron of MDC1(-):59bp after exon 4	Intron of SUPT3H(-):561bp after exon 4	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.587+60:MDC1_c.101+43967:SUPT3Hinv	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MDC1:SUPT3H}	14607606	NA	0	6	0	6
P-0054732-T01-IM6	SOMATIC	CIC	CIC	19	19	42796774	48965154	Exon 14 of CIC(+)	Exon 2 of KCNJ14(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3232:CIC_chr19:g.48965154inv	PRECISE		MANUAL_OK	5to5	-	6168380	NA	0	13	10	15
P-0054834-T01-IM6	SOMATIC	NF1	NF1	17	17	27681932	29685615	IGR: 36Kb before MIR4523(+)	Exon 55 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.8088:NF1_chr17:g.27681932del	PRECISE		MANUAL_OK	3to5	-	2003683	NA	0	3	10	4
P-0054839-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141499700	141569369	IGR: 22Kb before CHRAC1(+)	Intron of AGO2(-):124bp after exon 6	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.790+125:AGO2_chr8:g.141499700:del	PRECISE		MANUAL_OK	3to5	-	69669	NA	0	8	9	8
P-0054843-T01-IM6	SOMATIC	WHSC1	NELFA	4	4	1978395	1992260	Exon 21 of WHSC1(+)	Intron of NELFA(-):664bp before exon 3	GRCh37	INVERSION	WHSC1(NM_133330) -NELFA (NM_005663) rearrangement: c.3815:WHSC1_c.416-664:NELFAinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {WHSC1:NELFA}	13865	NA	0	11	10	11
P-0054844-T01-IM6	SOMATIC	CDC73	CDC73	1	1	170817166	193181324	IGR: 87Kb before MROH9(+)	Intron of CDC73(+):94bp after exon 12	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.1066+94:CDC73_chr1:g.170817166inv	PRECISE		MANUAL_OK	3to3	-	22364158	NA	0	17	10	16
P-0054853-T01-IM6	SOMATIC	CDK12	CDK12	17	12	37650648	1896151	Intron of CDK12(+):128bp before exon 5	3-UTR of ADIPOR2(+):33Kb after coding stop	GRCh37	TRANSLOCATION	CDK12 (NM_015083) rearrangement : t(12;17)(p13.32;)q21.1(chr12:1896151::chr17:g.37650648 )	PRECISE		MANUAL_OK	5to3	-	0	NA	0	32	10	32
P-0014768-T02-IM6	SOMATIC	PGAP3	ERBB2	17	17	37841149	37881294	Intron of PGAP3(-):147bp before exon 3	Intron of ERBB2(+):7bp before exon 21	GRCh37	INVERSION	PGAP3 (NM_033419) - ERBB2 (NM_004448) rearrangement: c.280-147:PGAP3_c.2494-8:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PGAP3:ERBB2}	40145	NA	0	11	10	17
P-0017046-T01-IM6	SOMATIC	IGSF21	PIK3R3	1	1	18643832	46543287	Intron of IGSF21(+):18Kb before exon 4	Intron of PIK3R3(-):2bp before exon 3	GRCh37	INVERSION	IGSF21 (NM_032880) - PIK3R3 (NM_003629) rearrangement: c.306-17554:IGSF21_c.216-2:PIK3R3inv	PRECISE		MANUAL_OK	3to3	-	27899455	NA	NA	53	10	NA
P-0017046-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740310	1808671	Intron of TACC3(+):881bp after exon 10	Intron of FGFR3(+):10bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion (FGFR3 exons 1-17 fused in-frame with TACC3 exons 11-16): c.2274+10:FGFR3_c.1941+881:TACC3dup	PRECISE		MANUAL_OK	5to3	-	68361	NA	NA	21	10	NA
P-0017046-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	36454836	38287309	IGR: 187Kb before KCNU1(+)	Exon 4 of FGFR1(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.348:FGFR1_chr8:g.36454836inv	PRECISE		MANUAL_OK	5to5	-	1832473	NA	NA	95	10	NA
P-0021421-T01-IM6	SOMATIC	NF1	NF1	17	17	29557013	29559089	Intron of NF1(+):21bp after exon 22	Intron of NF1(+):1bp before exon 25	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.2990+21_c.3198-2del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2076	NA	0	8	10	63
P-0021421-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25967162	26047478	Exon 12 of ASXL2(-)	Intron of ASXL2(-):18Kb before exon 3	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.144-18272_c.2044del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	80316	NA	0	11	10	14
P-0028913-T03-IM6	SOMATIC	SMARCD1	GPD1	12	12	50488428	50498622	Intron of SMARCD1(+):73bp after exon 10	Intron of GPD1(+):88bp after exon 2	GRCh37	INVERSION	SMARCD1 (NM_003076) - GPD1 (NM_005276): c.1269+73:SMARCD1_c.219+88:GPD1inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	10194	NA	0	5	0	5
P-0028913-T03-IM6	SOMATIC	RBM10	RBM10	X	X	47008283	47028890	Intron of RBM10(+):1Kb after exon 2	Exon 3 of RBM10(+)	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.212+1386_c.389inv	PRECISE		MANUAL_OK	5to5	-	20607	NA	0	27	10	36
P-0032269-T01-IM6	SOMATIC	APC	APC	5	5	112175780	112196053	Exon 16 of APC(+)	Promoter of SRP19(+):831bp from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4489_chr5:g.112196053del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	20273	NA	0	49	10	52
P-0032569-T02-IM6	SOMATIC	GNAS	GNAS	20	20	55438526	57478643	IGR: 234Kb before TFAP2C(+)	Intron of GNAS(+):3bp after exon 4	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.312+3:GNAS_chr20:g.55438526inv	PRECISE		MANUAL_OK	3to3	-	2040117	NA	0	66	10	66
P-0032569-T02-IM6	SOMATIC	TRIM24	BRAF	7	7	138256539	140487936	Intron of TRIM24(+):791bp after exon 11	Intron of BRAF(-):552bp before exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.1878+791:TRIM24_c.1141-552:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2231397	NA	0	86	10	85
P-0034036-T03-IM6	SOMATIC	PARK2	PARK2	6	6	162445359	162683466	Intron of PARK2(-):30Kb after exon 5	Intron of PARK2(-):90bp after exon 3	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.412+91_c.618+29764del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	238107	NA	0	15	10	19
P-0037571-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49434833	49441057	Exon 31 of KMT2D(-)	Intron of KMT2D(-):484bp before exon 15	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.4237-484_c.6720del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6224	NA	0	4	10	4
P-0037673-T01-IM6	SOMATIC	APC	APC	22	5	29065471	112175871	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112175871::chr22:g.29065471)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	19	10	20
P-0040601-T01-IM6	SOMATIC	SPRYD3	KMT2D	12	12	49422643	53461041	Exon 45 of KMT2D(-)	Intron of SPRYD3(-):390bp after exon 8	GRCh37	DELETION	SPRYD3 (NM_032840) - KMT2D (NM_003482) rearrangement: c.901+391:SPRYD3_c.14350:KMT2Ddel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SPRYD3:KMT2D}	4038398	NA	0	37	10	37
P-0043594-T01-IM6	SOMATIC	EML4	ALK	2	2	29448381	42486142	Exon 19 of ALK(-)	Intron of EML4(+):2Kb after exon 3	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.339-2119:EML4_c.3118:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13037761	NA	0	36	10	36
P-0044143-T01-IM6	SOMATIC	APC	APC	22	5	29065511	112173427	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112173427::chr22:g.29065511)	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	31	0	31
P-0045253-T01-IM6	SOMATIC	CREBBP	TRAP1	16	16	3767400	3778762	Intron of TRAP1(-):21bp after exon 1	Exon 31 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.6286:CREBBP_c.88+22:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:TRAP1}	11362	NA	0	26	10	26
P-0045717-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46733272	60351411	Exon 10 of RAD54L(+)	IGR: 8Kb before CYP2J2(-)	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.1033:RAD54L_chr1:g.60351411inv	PRECISE		MANUAL_OK	3to3	-	13618139	NA	0	41	10	41
P-0045717-T03-IM6	SOMATIC	RAD54L	RAD54L	1	1	46733272	60351411	Exon 10 of RAD54L(+)	IGR: 8Kb before CYP2J2(-)	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.1033:RAD54L_chr1:g.60351411inv	PRECISE		MANUAL_OK	3to3	-	13618139	NA	0	102	10	102
P-0046055-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	8	7977072	144092736	Exon 13 of ALOX12B(-)	3-UTR of LOC100133669(-):7Kb after coding stop	GRCh37	TRANSLOCATION	ALOX12B (NM_001139) rearrangement: t(8;17)(q24.3;p13.1)(chr8:g.144092736::chr17:g.7977072)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0046055-T01-IM6	SOMATIC	ACTN4	CIC	19	19	39205218	42797905	Intron of ACTN4(+):17bp after exon 9	Exon 16 of CIC(+)	GRCh37	DELETION	ACTN4 (NM_004924) - CIC (NM_015125) rearrangement: c.912+17:ACTN4_c.3957:CICdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ACTN4:CIC}	3592687	NA	0	23	0	25
P-0047197-T01-IM6	SOMATIC	LATS1	LATS1	10	6	102418032	149983086	IGR: 87Kb before PAX2(+)	Exon 8 of LATS1(-)	GRCh37	TRANSLOCATION	LATS1 (NM_004690) rearrangement: t(6;10)(q25.1;q24.31)(chr6:g.149983086::chr10:g.102418032)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	32	10	32
P-0047833-T02-IM6	SOMATIC	LRBA	BRAF	7	4	140493444	151502269	Intron of BRAF(-):663bp after exon 8	Intron of LRBA(-):7Kb after exon 40	GRCh37	TRANSLOCATION	LRBA (NM_001199282) - BRAF (NM_004333) fusion: t(4;7)(q31.3;q34)(chr4:g.151502269::chr7:g.140493444)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LRBA:BRAF}	0	NA	0	128	10	134
P-0047833-T02-IM6	SOMATIC	AR	AR	X	X	66934531	66942786	Intron of AR(+):3Kb before exon 5	Exon 7 of AR(+)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-2789_c.2567del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8255	NA	0	48	10	48
P-0048063-T01-IM6	SOMATIC	TCF3	SBNO2	19	19	1153109	1650224	Intron of SBNO2(-):1Kb after exon 2	Exon 1 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) - SBNO2 (NM_014963) rearrangement: c.24:TCF3_c.93+1074:SBNO2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TCF3:SBNO2}	497115	NA	0	13	0	14
P-0048170-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	20859351	36171911	IGR: 926Kb before LOC101927797(-)	Intron of RUNX1(-):152bp before exon 8	GRCh37	INVERSION	RUNX1 (NM_001754) rearrangement: c.806-152:RUNX1_chr21:g.20859351inv	IMPPRECISE		MANUAL_OK	3to3	-	15312560	NA	0	5	0	5
P-0048658-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37615359	37618484	Promoter of CDK12(+):2Kb from tx start	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.160:CDK12_chr17:g.37615359del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3125	NA	0	8	10	8
P-0049065-T01-IM6	SOMATIC	RAD21	EIF3H	8	8	117750976	117870626	Intron of EIF3H(-):13Kb before exon 2	Exon 5 of RAD21(-)	GRCh37	DELETION	RAD21 (NM_006265) - EIF3H (NM_003756) rearrangement: c.446:RAD21_c.133-12565:EIF3Hdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RAD21:EIF3H}	119650	NA	0	9	10	9
P-0049078-T01-IM6	SOMATIC	TPM3	NTRK1	1	1	154136376	156843537	Intron of TPM3(-):6Kb before exon 7	Exon 8 of NTRK1(+)	GRCh37	INVERSION	TPM3 (NM_001278190) - NTRK1 (NM_002529)  fusion: c.395-6179:TPM3_ c.963:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPM3:NTRK1}	2707161	NA	0	5	10	6
P-0049956-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151838491	151884596	Intron of KMT2C(-):2Kb before exon 56	Intron of KMT2C(-):35bp before exon 33	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.4794-35_c.14344-1615del	PRECISE		MANUAL_OK	3to5	Deletion of 23 exons : out of frame	46105	NA	0	13	10	13
P-0050143-T01-IM6	SOMATIC	TP53	TP53	17	17	7574037	8374380	Intron of TP53(-):4bp before exon 10	Promoter of NDEL1(+):35Kb from tx start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.994-4:TP53_chr17:g.8374380del	PRECISE		MANUAL_OK	3to5	-	800343	NA	0	32	10	34
P-0050152-T01-IM6	SOMATIC	TP53	TP53	17	17	7577694	7582323	Intron of TP53(-):86bp before exon 7	5-UTR of TP53(-):9Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.673-86:TP53_chr17:g.7582323del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	4629	NA	0	15	0	22
P-0050437-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	16024449	16027067	Exon 16 of NCOR1(-)	Intron of NCOR1(-):2Kb after exon 15	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.1634+2329_c.1769inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2618	NA	0	8	9	9
P-0050437-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	8	18273183	35063141	Intron of PIK3R2(+):34bp before exon 9	IGR: 30Kb before UNC5D(+)	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(8;19)(p12;p13.11)(chr8:g.35063141::chr19:g.18273183)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0050437-T01-IM6	SOMATIC	EPHA7	EPHA7	6	6	93973852	93975022	Intron of EPHA7(-):219bp before exon 9	Intron of EPHA7(-):602bp before exon 8	GRCh37	DELETION	EPHA7 (NM_004440) rearrangement: c.1634-602_c.1743-219del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1170	NA	0	6	10	6
P-0050516-T01-IM6	SOMATIC	TP53	TP53	17	17	7576928	7579727	Intron of TP53(-):2bp before exon 9	Intron of TP53(-):6bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-6_c.920-2del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	2799	NA	0	88	10	95
P-0050574-T02-IM6	SOMATIC	AGAP3	BRAF	7	7	140493208	150823608	Intron of BRAF(-):899bp after exon 8	Intron of AGAP3(+):2Kb before exon 10	GRCh37	INVERSION	AGAP3 (NM_031946) - BRAF (NM_004333) fusion: c.1222-2059:AGAP3_c.1140+900:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGAP3:BRAF}	10330400	NA	0	67	10	66
P-0050837-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	37998541	38148152	Promoter of ASH2L(+):35Kb from tx start	Exon 17 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2959:WHSC1L1_chr8:g.37998541inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WHSC1L1:ASH2L}	149611	NA	0	22	10	27
P-0051087-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140490145	140505548	Intron of BRAF(-):3Kb before exon 9	Intron of BRAF(-):2Kb after exon 5	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.711+2212_c.1141-2761inv	PRECISE		MANUAL_OK	3to3	-	15403	NA	0	5	7	5
P-0051314-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28595385	28597557	Intron of FLT3(-):2Kb after exon 19	Exon 19 of FLT3(-)	GRCh37	INVERSION	FLT3 (NM_004119) rearrangement: c.2348_c.2418+2102inv	PRECISE		MANUAL_OK	3to3	-	2172	NA	0	82	10	82
P-0051314-T01-IM6	SOMATIC	FLT1	FLT1	21	13	14363772	29001388	IGR: 47Kb before ANKRD30BP2(+)	Exon 10 of FLT1(-)	GRCh37	TRANSLOCATION	FLT1 (NM_002019) rearrangement: t(13;21)(q12.3;q11.2)(chr13:g.29001388::chr21:g.14363772)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	27
P-0051720-T01-IM6	SOMATIC	B2M	B2M	15	15	45006214	45011485	Intron of B2M(+):1Kb before exon 2	Promoter of B2M(+):8Kb from tx start	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-1407:B2M_chr15:g.45011485del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	5271	NA	0	14	10	15
P-0051779-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12043081	57848901	Intron of MAP2K4(+):74bp before exon 10	Intron of VMP1(+):2Kb before exon 7	GRCh37	INVERSION	MAP2K4 (NM_003010) rearrangement: c.1041-75:MAP2K4_chr17:g.57848901inv	IMPPRECISE		MANUAL_OK	5to5	-	45805820	NA	0	6	0	6
P-0051780-T01-IM6	SOMATIC	NUP93	NUP93	16	16	56852515	56855248	Intron of NUP93(+):60bp before exon 6	Intron of NUP93(+):167bp before exon 7	GRCh37	DELETION	NUP93 (NM_014669) rearrangement: c.490-61_c.565-168del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2733	NA	0	7	10	8
P-0051780-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1058110	1619340	Intron of ABCA7(+):34bp before exon 37	Exon 14 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1301_c.5026-35del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	561230	NA	0	14	10	14
P-0051780-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187514549	187629330	Intron of FAT1(-):2Kb after exon 26	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.1652_c.13138+2294del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	114781	NA	0	45	10	46
P-0051805-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	20813854	59876611	IGR: 28Kb before LOC339260(+)	Exon 9 of BRIP1(-)	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.1190:BRIP1_chr17:g.20813854inv	PRECISE		MANUAL_OK	3to3	-	39062757	NA	0	38	10	53
P-0052529-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48604761	48605468	Exon 12 of SMAD4(+)	3-UTR of SMAD4(+):32Kb after coding stop	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.1583:SMAD4_chr18:g.48605468inv	PRECISE		MANUAL_OK	3to3	-	707	NA	0	52	10	52
P-0052530-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72992212	73076988	Exon 2 of ZFHX3(-)	5-UTR of ZFHX3(-):256Kb before coding start	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.1833:ZFHX3_chr16:g.73076988del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	84776	NA	0	6	10	6
P-0052848-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63532989	63586778	Exon 7 of AXIN2(-)	IGR: 45Kb before CEP112(-)	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.1905:AXIN2_chr17:g.63586778inv	PRECISE		MANUAL_OK	5to5	-	53789	NA	0	3	10	6
P-0052888-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162266890	162475033	Intron of PARK2(-):60Kb before exon 7	Intron of PARK2(-):89bp after exon 5	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.618+90_c.735-59950del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	208143	NA	0	4	7	4
P-0053072-T01-IM6	SOMATIC	TP53	TP53	20	17	57221188	7578162	IGR: 5Kb before STX16-NPEPL1(+)	Intron of TP53(-):14bp after exon 6	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.32)(chr17:g.7578162::chr20:g.57221188)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	108	10	132
P-0053129-T01-IM6	SOMATIC	EPHA5	EPHA5	4	4	66233063	74666425	Intron of EPHA5(-):11bp after exon 10	IGR: 36Kb before CXCL6(+)	GRCh37	INVERSION	EPHA5 (NM_004439) rearrangement: c.1924+12:EPHA5_chr4:g.74666425inv	PRECISE		MANUAL_OK	5to5	-	8433362	NA	1	15	10	18
P-0053138-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193077325	193119332	Promoter of GLRX2(-):12Kb from tx start	Intron of CDC73(+):101bp before exon 9	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.829-102:CDC73_chr1:g.193077325del	PRECISE		MANUAL_OK	3to5	-	42007	NA	0	21	10	21
P-0053138-T01-IM6	SOMATIC	PIM1	PIM1	6	2	37140471	201920381	Intron of PIM1(+):300bp before exon 5	5-UTR of FAM126B(-):74Kb before coding start	GRCh37	TRANSLOCATION	PIM1 (NM_002648) rearrangement: t(2;6)(q33.1;p21.2)(chr2:g.201920381::chr6:g.37140471)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	6	0	6
P-0053138-T01-IM6	SOMATIC	NBN	NBN	8	8	90843195	90947853	IGR: 71Kb before OSGIN2(+)	Intron of NBN(-):13bp before exon 16	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.2235-13:NBN_chr8:g.90843195del	PRECISE		MANUAL_OK	3to5	-	104658	NA	0	4	8	4
P-0053824-T01-IM6	SOMATIC	DCUN1D1	DCUN1D1	3	3	114138833	182681733	3-UTR of ZBTB20(-):481Kb after coding stop	Exon 3 of DCUN1D1(-)	GRCh37	INVERSION	DCUN1D1 (NM_020640) rearrangement: c.325:DCUN1D1_chr3:g.114138833inv	PRECISE		MANUAL_OK	5to5	-	68542900	NA	0	5	10	7
P-0054455-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68842738	74366311	Exon 5 of CDH1(+)	3-UTR of LOC283922(-):36Kb after coding stop	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.674:CDH1_chr16:g.74366311del	PRECISE		MANUAL_OK	3to5	-	5523573	NA	0	7	10	37
P-0037465-T04-IM6	SOMATIC	CREBBP	SLX4	16	16	3647884	3825170	Exon 6 of SLX4(-)	Intron of CREBBP(-):476bp before exon 12	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.2159-476:CREBBP_c.1280:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	177286	NA	0	74	10	77
P-0037465-T04-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411867	139450872	Intron of NOTCH1(-):30bp before exon 9	IGR: 9Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1442-30:NOTCH1_chr9:g.139450872del	PRECISE		MANUAL_OK	3to5	-	39005	NA	0	185	10	200
P-0001036-T01-IM3	SOMATIC	MKRN1	BRAF	7	7	140158415	140482250	Intron of MKRN1(-): 392bp after exon 4	Intron of BRAF(-): 571bp after exon 10	GRCh37	DUPLICATION		PRECISE		AUTO_OK	5to3	Protein fusion: in frame (MKRN1-BRAF)	323835	NA	0	6	14	9
P-0013641-T01-IM5	SOMATIC	SPOCK3	MLL	11	4	118373285	168136694	Exon 27 of MLL(+)	Intron of SPOCK3(-): 18Kb after exon 2	GRCh37	TRANSLOCATION	SPOCK3 (NM_016950) - MLL (NM_001197104) rearrangement: t(4;11)(11q23.3;4q32.3)(chr11:g.118373285::chr4:g.168136694)	PRECISE		MANUAL_OK	5to5	Protein fusion: mid-exon (SPOCK3-MLL)	0	NA	0	28	23	27
P-0013641-T01-IM5	SOMATIC	EIF3H	RAD21	8	8	117754826	117863043	Intron of EIF3H(-): 13Kb after exon 1	Intron of RAD21(-): 37bp before exon 12	GRCh37	DUPLICATION	EIF3H (NM_003756) - RAD21 (NM_006265)  rearrangement: c.132+13079:EIF3H_c.1471-37:RAD21dup	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (EIF3H-RAD21)	108217	NA	0	18	29	18
P-0054920-T01-IM6	SOMATIC	ERCC5	ERCC5	13	13	81634429	103518895	IGR: 42Kb before LINC00377(+)	Intron of ERCC5(+):86bp before exon 11	GRCh37	INVERSION	ERCC5 (NM_000123) rearrangement: c.2320-87:ERCC5_chr13:g.81634429inv	IMPPRECISE		MANUAL_OK	5to5	-	21884466	NA	0	6	0	6
P-0047678-T02-IM6	SOMATIC	TRAPPC9	CARM1	19	8	11027340	140999698	Intron of CARM1(+):31bp before exon 8	Intron of TRAPPC9(-):654bp before exon 19	GRCh37	TRANSLOCATION	TRAPPC9 (NM_031466) - CARM1 (NM_199141) -rearrangement: t(8;19)(q24.3;q13.2)(chr8:g.140999698::chr19:g.11027340)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TRAPPC9:CARM1}	0	NA	0	50	10	57
P-0047678-T02-IM6	SOMATIC	BCL2L1	BCL2L1	20	18	30309956	76377573	Exon 2 of BCL2L1(-)	IGR: 363Kb before SALL3(+)	GRCh37	TRANSLOCATION	BCL2L1 (NM_138578) rearrangement: t(18;20)(q23;q11.21)(chr18:g.76377573::chr20:g.30309956)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	104	10	106
P-0047678-T02-IM6	SOMATIC	KDM6A	KDM6A	X	12	44820478	11502836	Intron of KDM6A(+):50bp before exon 3	Promoter of PRB1(-):2Kb from tx start	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(12;X)(q13.2;p11.3)(chr12:g.11502836::chrX:g.44820478)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {PRB1:KDM6A}	0	NA	0	8	0	8
P-0054867-T01-IM6	SOMATIC	MED12	MED12	X	X	70356988	82069997	Intron of MED12(+):48bp before exon 39	IGR: 693Kb before POU3F4(+)	GRCh37	INVERSION	MED12 (NM_005120) Rearrangement : c.5552-49:MED12_chrX:g.82069997inv	IMPPRECISE		MANUAL_OK	5to5	-	11713009	NA	0	26	0	26
P-0054876-T01-IM6	SOMATIC	CTCFL	SRSF2	20	17	56094692	74733202	Intron of CTCFL(-):259bp before exon 4	Exon 1 of SRSF2(-)	GRCh37	TRANSLOCATION	CTCFL (NM_080618) - SRSF2 (NM_003016) rearrangement: t(17;20)(q25.1;q13.31)(chr17:g.74733202::chr20:g.56094692)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CTCFL:SRSF2}	0	NA	0	18	10	22
P-0054878-T01-IM6	SOMATIC	ASXL2	ASXL2	17	2	49412886	25973159	Promoter of LOC440446(+):1Kb from tx start	Exon 11 of ASXL2(-)	GRCh37	TRANSLOCATION	ASXL2 (NM_014727) rearrangement: t(2;17)(q23.3;q21.33)(chr2:g.25973159::chr17:g.49412886)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	54	10	55
P-0054891-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591119	67593136	Exon 13 of PIK3R1(+)	Intron of PIK3R1(+):103bp before exon 16	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1712_c.1986-104del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2017	NA	0	10	10	11
P-0054893-T01-IM6	SOMATIC	TOP1	TOP1	20	15	39750526	61885543	Intron of TOP1(+):96bp after exon 19	IGR: 259Kb before VPS13C(-)	GRCh37	TRANSLOCATION	TOP1 (NM_003286) rearrangement: t(15;20)(q22.2;q12)(chr15:g.61885543::chr20:g.39750526)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	19
P-0054894-T01-IM6	SOMATIC	PPM1D	PPM1D	17	17	52045118	58678236	IGR: 145Kb before KIF2B(+)	Exon 1 of PPM1D(+)	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: chr17:g.52045118_c.461:PPM1Ddel	PRECISE		MANUAL_OK	3to5	-	6633118	NA	0	41	10	42
P-0054922-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	122429103	139401787	IGR: 500Kb before BRINP1(-)	Exon 22 of NOTCH1(-)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.3613:NOTCH1_chr9:g.122429103	IMPPRECISE		MANUAL_OK	3to3	-	16972684	NA	0	35	0	41
P-0054945-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89348574	89350350	Exon 9 of ANKRD11(-)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.2600_c.4376del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1776	NA	0	5	10	5
P-0054947-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55194183	55221794	Intron of EGFR(+):16Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-15796_c.838del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27611	NA	0	382	0	2618
P-0054947-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55194392	55221792	Intron of EGFR(+):16Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-15587_c.836del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	27400	NA	2	5	10	3
P-0054947-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268434	55270412	Intron of EGFR(+):328bp after exon 24	Intron of EGFR(+):94bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+328_c.3271+94del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1978	NA	0	139	10	148
P-0026070-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3778052	3821680	Exon 31 of CREBBP(-)	Intron of CREBBP(-):693bp before exon 14	GRCh37	DUPLICATION	CREBBP (NM_001754) rearrangement: c.2464-693:CREBBP_chr16:g.3821680dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	43628	NA	0	134	10	141
P-0044386-T02-IM6	SOMATIC	RB1	RB1	13	13	40848925	49047376	IGR: 72Kb before LINC00598(-)	Intron of RB1(+):119bp before exon 24	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.2490-120:RB1_chr13:g.40848925inv	PRECISE		MANUAL_OK	5to5	-	8198451	NA	0	5	3	5
P-0121449-T03-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15290107	15410964	Intron of NOTCH3(-):14bp before exon 22	IGR: 53Kb before BRD4(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.3461-14:NOTCH3_chr19:g.15410964del	PRECISE		MANUAL_OK	3to5	-	120857	NA	0	103	10	107
P-0053385-T03-IM6	SOMATIC	PBRM1	PBRM1	3	3	52663053	52710857	Intron of PBRM1(-):2bp before exon 13	Intron of PBRM1(-):2Kb after exon 3	GRCh37	DELETION	PBRM1 (NM_018165) rearrangement: c.1206-2_c.236+1659del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	47804	NA	0	47	10	49
P-0054809-T01-IM6	SOMATIC	MSRA	DNMT3B	20	8	31388627	10035827	Intron of DNMT3B(+):13bp before exon 18	Intron of MSRA(+):30Kb before exon 2	GRCh37	TRANSLOCATION	MSRA (NM_012331) - DNMT3B (NM_175849) Rearrangement :  t (8;20) (p23.1;q11.21) (chr8:g.10035827::chr20:g.31388627)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MSRA:DNMT3B}	0	NA	0	6	10	6
P-0054873-T02-IM6	SOMATIC	SMAD4	SMAD4	18	18	48547104	48575114	IGR: 9Kb before SMAD4(+)	Exon 3 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.308:SMAD4_chr18:g.48547104del	PRECISE		MANUAL_OK	3to5	-	28010	NA	0	6	8	6
P-0054873-T02-IM6	SOMATIC	PRKAG2	KMT2C	7	7	151518712	151902382	Intron of PRKAG2(-):35Kb before exon 2	Intron of KMT2C(-):72bp before exon 25	GRCh37	DUPLICATION	PRKAG2 (NM_016203) - KMT2C (NM_170606) rearrangement: c.115-35085:PRKAG2_c.3842-72:KMT2Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PRKAG2:KMT2C}	383670	NA	0	7	10	7
P-0054874-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156834337	156835487	Intron of NTRK1(+):117bp after exon 2	Intron of NTRK1(+):896bp after exon 3	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.287+117_c.359+896del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1150	NA	0	3	6	3
P-0054879-T01-IM6	SOMATIC	B2M	B2M	15	15	45004582	45007838	Intron of B2M(+):771bp after exon 1	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048.2) rearrangement: c.67+771:B2M_c.285:B2Mdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3256	NA	0	12	10	12
P-0054879-T01-IM6	SOMATIC	MET	MET	7	7	116394304	116397566	Intron of MET(+):1Kb before exon 6	Exon 7 of MET(+)	GRCh37	DELETION	MET (NM_000245) rearrangement: c.1702-1105: MET_c.1938: METdel	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3262	NA	0	4	7	4
P-0054903-T02-IM6	SOMATIC	EPCAM	EPCAM	2	2	6953647	47604090	IGR: 15Kb before NRIR(-)	Intron of EPCAM(+):62bp before exon 5	GRCh37	DELETION	EPCAM (NM_002354) rearrangement: c.492-63:EPCAM_chr2:g.2:6953647del	PRECISE		MANUAL_OK	3to5	-	40650443	NA	0	41	10	41
P-0054909-T01-IM6	SOMATIC	FOXA1	FOXA1	14	5	38064164	159483543	Exon 1 of FOXA1(-)	Intron of TTC1(+):5Kb after exon 7	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) rearrangement: t(5;14)(q33.3;q21.1)(chr5:g.159483543::chr14:g.38064164)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	77	10	78
P-0054909-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	29963077	39575763	Intron of GAREM(-):10Kb after exon 2	Intron of PIK3C3(+):90bp before exon 8	GRCh37	DELETION	PIK3C3 (NM_002647) rearrangement: c.787-91:PIK3C3_chr18:g.29963077del	PRECISE		MANUAL_OK	3to5	-	9612686	NA	0	46	10	46
P-0054909-T01-IM6	SOMATIC	TGFBR1	TGFBR1	9	9	101893662	101900068	Intron of TGFBR1(+):1Kb before exon 3	Intron of TGFBR1(+):72bp before exon 4	GRCh37	INVERSION	TGFBR1 (NM_004612) rearrangement: c.344-1129_c.575-73inv	PRECISE		MANUAL_OK	5to5	-	6406	NA	0	10	10	11
P-0054910-T01-IM6	SOMATIC	RAF1	RAF1	3	3	12627098	176819498	Intron of RAF1(-):81bp after exon 14	5-UTR of TBL1XR1(-):76Kb before coding start	GRCh37	INVERSION	RAF1 (NM_002880) rearrangement: c.1536+82:RAF1_chr3:g.176819498inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	164192400	NA	0	10	0	10
P-0054914-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55140797	55221700	Intron of EGFR(+):54Kb after exon 1	Intron of EGFR(+):3bp before exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.88+53739_c.748-4inv	PRECISE		MANUAL_OK	5to5	-	80903	NA	0	1001	10	7489
P-0054914-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268512	55269834	Intron of EGFR(+):368bp before exon 25	Intron of EGFR(+):359bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-369_c.3162+359del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1322	NA	0	241	10	288
P-0054933-T01-IM6	SOMATIC	PLK2	PLK2	5	5	57750872	62641172	Intron of PLK2(-):24bp before exon 13	IGR: 615Kb before HTR1A(-)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.1756-24:PLK2_chr5:g.62641172inv	PRECISE		MANUAL_OK	3to3	-	4890300	NA	0	20	10	20
P-0000828-T05-IM6	SOMATIC	GTF2IRD1	BRAF	7	7	73988132	140483546	Intron of GTF2IRD1(+):14Kb after exon 22	Intron of BRAF(-):589bp before exon 10	GRCh37	INVERSION	GTF2IRD1 (NM_005685) - BRAF (NM_004333) rearrangement: c.2320+14147:GTF2IRD1_c.1178-589:BRAFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {GTF2IRD1:BRAF}	66495414	NA	0	4	0	4
P-0020236-T06-IM6	SOMATIC	KDM5A	KDM5A	12	6	427209	46159546	Intron of KDM5A(-):62bp after exon 19	IGR: 29Kb before RCAN2(-)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(6;12)(p21.1;p13.33)(chr6:g.46159546::chr12:g.427209)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	7	0	7
P-0041988-T03-IM6	SOMATIC	RAF1	RAF1	3	1	12633130	5573285	Intron of RAF1(-):76bp after exon 11	IGR: 51Kb before MIR4417(+)	GRCh37	TRANSLOCATION	RAF1 (NM_002880) rearrangement: t(1;3)(p36.31;p25.2)(chr1:g.5573285::chr3:g.12633130)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	12	10	12
P-0044759-T02-IM6	SOMATIC	TP53	TP53	17	17	7577680	7578711	Intron of TP53(-):72bp before exon 7	Intron of TP53(-):157bp before exon 5	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.376-157_c.673-72dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	1031	NA	0	29	10	36
P-0047438-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27099869	27100987	Exon 15 of ARID1A(+)	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3748_c.4269del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1118	NA	0	8	0	30
P-0047438-T02-IM6	SOMATIC	TIMM17A	ELF3	1	1	201932274	201981661	Intron of TIMM17A(+):469bp before exon 4	Intron of ELF3(+):97bp after exon 4	GRCh37	DELETION	TIMM17A (NM_006335) - ELF3 (NM_004433) rearrangement: c.191-470:TIMM17A_c.478+97:ELF3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TIMM17A:ELF3}	49387	NA	0	5	9	6
P-0047438-T02-IM6	SOMATIC	PAK1	PAK1	11	11	77047227	77203592	Exon 13 of PAK1(-)	IGR: 97Kb before AQP11(+)	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.1317:PAK1_chr11:g.77203592del	PRECISE		MANUAL_OK	3to5	-	156365	NA	0	4	10	5
P-0047752-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	118305881	118307492	Promoter of KMT2A(+):1Kb from tx start	Exon 1 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.265:KMT2A_chr11:g.118305881del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1611	NA	0	45	10	46
P-0051410-T03-IM6	SOMATIC	MDC1	MDC1	6	6	30679700	49573772	Exon 5 of MDC1(-)	Intron of RHAG(-):229bp before exon 10	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.2019:MDC1_chr6:g.49573772inv	PRECISE		MANUAL_OK	3to3	-	18894072	NA	0	10	10	10
P-0052796-T02-IM6	SOMATIC	MSH3	MSH3	5	5	78004347	80109616	IGR: 69Kb before ARSB(-)	Intron of MSH3(+):56bp after exon 20	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: c.2813+56:MSH3_chr5:g.78004347inv	PRECISE		MANUAL_OK	3to3	-	2105269	NA	0	19	10	18
P-0052796-T02-IM6	SOMATIC	MSH3	MSH3	5	5	80063848	80072060	Exon 14 of MSH3(+)	Intron of MSH3(+):483bp after exon 16	GRCh37	DUPLICATION	MSH3 (NM_002439) rearrangement: c.1993_c.2318+483dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8212	NA	0	16	10	16
P-0054905-T02-IM6	SOMATIC	IDH1	IDH1	2	2	169953288	209110118	Promoter of DHRS9(+):30Kb from tx start	Exon 5 of IDH1(-)	GRCh37	INVERSION	IDH1 (NM_005896) rearrangement: c.444:IDH1_chr2:g.166339317dup	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {DHRS9:IDH1}	39156830	NA	0	118	10	118
P-0054958-T02-IM6	SOMATIC	PAK2	BRAF	7	3	140486065	196530579	Intron of BRAF(-):1Kb after exon 9	Intron of PAK2(+):544bp after exon 4	GRCh37	TRANSLOCATION	PAK2 (NM_002577) - BRAF (NM_004333) rearrangement: t(3;7)(q29;q34)(chr3:g.196530579::chr7:g.140486065)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PAK2:BRAF}	0	NA	0	85	10	83
P-0054972-T01-IM6	SOMATIC	TP53	TP53	17	17	7168876	7576814	Promoter of CLDN7(-):6Kb from tx start	Intron of TP53(-):38bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+39:TP53_chr17:g.7168876del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TP53:CLDN7}	407938	NA	0	2	8	3
P-0054972-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39808001	42878690	Intron of ERG(-):9Kb after exon 2	Intron of TMPRSS2(-):1Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1187:TMPRSS2_c.236+9326:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3070689	NA	0	10	10	14
P-0054986-T01-IM6	SOMATIC	FUBP1	FUBP1	1	1	78430299	78438120	Intron of FUBP1(-):31bp after exon 10	Intron of FUBP1(-):2Kb before exon 2	GRCh37	DUPLICATION	FUBP1 (NM_003902) rearrangement: c.121-2421_c.837+32dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	7821	NA	0	100	10	105
P-0054986-T01-IM6	SOMATIC	IGF1R	IGF1R	15	6	99482488	19286825	Exon 18 of IGF1R(+)	IGR: 218Kb before LOC101928519(-)	GRCh37	TRANSLOCATION	IGF1R (NM_000875) rearrangement: c.3298-166:IGF1R_chr15:g.66176606inv	PRECISE		MANUAL_OK	3to5	-	0	NA	0	46	10	48
P-0054998-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115115437	115188747	Exon 5 of TBX3(-)	IGR: 81Kb before TBX3(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.889:TBX3_chr12:g.115188747del	PRECISE		MANUAL_OK	3to5	-	73310	NA	0	16	10	17
P-0055009-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39873792	42867688	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.127-1183:TMPRSS2_c.40-56248:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2993896	NA	0	32	0	33
P-0055009-T01-IM6	SOMATIC	AR	SPARC	X	5	66931564	151046748	Intron of AR(+):33bp after exon 4	Intron of SPARC(-):279bp after exon 7	GRCh37	TRANSLOCATION	AR (NM_000044) rearrangement: t(5;X)(q33.1;q12)(chr5:g.151046748::chrX:g.66931564)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	41	10	41
P-0055010-T01-IM6	SOMATIC	ATM	TANC2	17	11	61341622	108158342	Intron of TANC2(+):3Kb before exon 7	Exon 27 of ATM(+)	GRCh37	TRANSLOCATION	ATM (NM_000051) - TANC2 (NM_025185) rearrangement: t(11;17)(q22.3;q23.3)(chr11:g.108158342::chr17:g.61341622)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ATM:TANC2}	0	NA	0	5	10	5
P-0055015-T01-IM6	SOMATIC	SMARCA4	AXL	19	19	11135227	41758150	Intron of SMARCA4(+):113bp after exon 21	Intron of AXL(+):105bp before exon 15	GRCh37	DELETION	SMARCA4 (NM_003072) - AXL (NM_021913) rearrangement: c.3081+113:SMARCA4_c.1712-106:AXLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SMARCA4:AXL}	30622923	NA	0	24	10	26
P-0055059-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866010	42870783	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):667bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-667:TMPRSS2_c.40-48466:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004773	NA	0	46	10	47
P-0055062-T01-IM6	SOMATIC	GPS2	GPS2	17	10	7217313	995521	Intron of GPS2(-):6bp before exon 6	IGR: 17Kb before LOC101927762(+)	GRCh37	TRANSLOCATION	GPS2 (NM_004489) rearrangement: t(10;17)(p15.3;p13.1)(chr10:g.995521::chr17:g.7217313)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	19
P-0053737-T01-IM6	SOMATIC	HCK	LYN	20	8	30674485	56879340	Exon 10 of HCK(+)	Exon 9 of LYN(+)	GRCh37	TRANSLOCATION	HCK (NM_001172133) - LYN (NM_002350) rearrangement: t(8;20)(q12.1;q11.21)(chr8:g.56879340::chr20:g.30674485)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HCK:LYN}	0	NA	0	6	0	6
P-0053737-T01-IM6	SOMATIC	FLI1	ERG	21	11	39755655	128680564	Exon 10 of ERG(-)	Exon 9 of FLI1(+)	GRCh37	TRANSLOCATION	FLI1 (NM_002017) - ERG (NM_182918) rearrangement: t(11;21)(q24.3;q22.2)(chr11:g.128680564::chr21:g.39755655)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FLI1:ERG}	0	NA	0	6	0	8
P-0053737-T01-IM6	SOMATIC	EP300	CREBBP	22	16	41573144	3779747	Exon 31 of EP300(+)	Exon 31 of CREBBP(-)	GRCh37	TRANSLOCATION	EP300 (NM_001429) - CREBBP (NM_004380) rearrangement: t(16;22)(p13.3;q13.2)(chr16:g.3779747::chr22:g.41573144)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EP300:CREBBP}	0	NA	0	40	0	48
P-0054881-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15272548	17622439	Intron of NOTCH3(-):23bp before exon 33	5-UTR of PGLS(+):42bp before coding start	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.5914-23:NOTCH3_chr19:g.17622439inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PGLS:NOTCH3}	2349891	NA	0	10	10	10
P-0008143-T01-IM5	SOMATIC	ZNF346	FGFR4	5	5	176452019	176520497	Intron of ZNF346(+): 2Kb after exon 1	Exon 10 of FGFR4(+)	GRCh37	DELETION	ZNF346 (NM_012279) - FGFR4 (NM_213647) rearrangement : c.175+2105:ZNF346_c.1342:FGFR4del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (ZNF346-FGFR4)	68478	NA	0	17	34	17
P-0026976-T01-IM6	SOMATIC	ARID2	ARID2	12	12	42529265	46242581	Intron of GXYLT1(-):6Kb before exon 2	Intron of ARID2(+):37bp before exon 13	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: chr12:g.42529265_c.1581-38:ARID2del	PRECISE		MANUAL_OK	3to5	-	3713316	NA	0	15	10	15
P-0029844-T02-IM6	SOMATIC	FGFR1	FGFR1	15	8	63609780	38282193	IGR: 6Kb before CA12(-)	Exon 8 of FGFR1(-)	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) rearrangement: t(8;15)(p11.23;q22.2)(chr8:g.38282193::chr15:g.63609780)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	56	10	59
P-0031437-T01-IM6	SOMATIC	STK11	STK11	19	19	1221340	11593799	Intron of STK11(+):1bp after exon 6	Promoter of ELAVL3(-):32Kb from tx start	GRCh37	INVERSION	STK11 (NM_000455) Rearrangement: c.862+1:STK11_chr19:g.11593799inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {STK11:ELAVL3}	10372459	NA	0	20	10	20
P-0046583-T01-IM6	SOMATIC	CACNA1A	TP53	19	17	13578863	7578498	Intron of CACNA1A(-):13Kb before exon 2	Exon 5 of TP53(-)	GRCh37	TRANSLOCATION	CACNA1A (NM_001127222) - TP53 (NM_000546) rearrangement: t(17;19)(p13.1;p13.2)(chr17:g.7578498::chr19:g.13578863)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CACNA1A:TP53}	0	NA	0	26	10	27
P-0052745-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29688551	128670137	Exon 12 of EWSR1(+)	Intron of FLI1(+):5Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128670137::chr22:g.29688551)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	NA	0	105	10	136
P-0055086-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46724468	48974463	Intron of RAD54L(+):50bp after exon 5	IGR: 24Kb before AGBL4(-)	GRCh37	DELETION	RAD54L (NM_001142548) rearrangement: c.271+50:RAD54L_chr1:g.48974463del	IMPPRECISE		MANUAL_OK	3to5	-	2249995	NA	0	5	0	5
P-0049833-T03-IM6	SOMATIC	NF1	NF1	17	11	29490266	72189883	Exon 4 of NF1(+)	IGR: 92Kb before LINC01537(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(11;17)(q13.4;q11.2)(chr11:g.72189883::chr17:g.29490266)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	5	0	5
P-0055083-T01-IM6	SOMATIC	SMARCA4	TMEM158	19	3	11143997	45267452	Exon 26 of SMARCA4(+)	Exon 1 of TMEM158(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) - TMEM158 (NM_015444) rearrangement: t(3;19)(p21.31;p13.2)(chr3:g.45267452::chr19:g.11143997)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMARCA4:TMEM158}	0	NA	0	6	6	6
P-0054117-T02-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120465403	120602050	Intron of NOTCH2(-):2bp before exon 27	Intron of NOTCH2(-):10Kb after exon 1	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.73+9898_c.4860-2del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 25 exons : out of frame	136647	NA	0	14	0	16
P-0055038-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29683738	32416051	Intron of EWSR1(+):615bp after exon 8	Intron of WT1(-):2Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416051::chr22:g.29683738)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	122	10	120
P-0055090-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684415	32416160	Intron of EWSR1(+):179bp before exon 9	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416160::chr22:g.29684415)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	68	10	68
P-0055122-T01-IM6	SOMATIC	KCNN3	RIT1	1	1	154732151	155870462	Intron of KCNN3(-):12Kb after exon 3	Intron of RIT1(-):53bp before exon 6	GRCh37	DUPLICATION	KCNN3 (NM_002249) - RIT1 (NM_006912) rearrangement: c.1448+12300:KCNN3_c.430-53:RIT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KCNN3:RIT1}	1138311	NA	0	33	10	33
P-0055130-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70119635	70151144	Intron of SOX9(+):48bp before exon 3	IGR: 34Kb before SOX9(+)	GRCh37	DUPLICATION	SOX9 (NM_000346) rearrangement: c.686-49:SOX9_chr17:g.70151144dup	PRECISE		MANUAL_OK	5to3	-	31509	NA	0	81	10	89
P-0055130-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68992968	69009414	Intron of PREX2(+):12bp before exon 17	Exon 22 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.1786-13_c.2531dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	16446	NA	0	124	10	130
P-0055134-T01-IM6	SOMATIC	KIAA1683	JAK3	19	19	17948966	18378403	Intron of JAK3(-):94bp before exon 12	Intron of KIAA1683(-):67bp before exon 3	GRCh37	DELETION	KIAA1683 (NM_001145304) - JAK3 (NM_000215) rearrangement: c.14-67:KIAA1683_c.1570-94:JAK3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KIAA1683:JAK3}	429437	NA	0	41	10	44
P-0055138-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876085	42875130	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4747:TMPRSS2_c.40-58541:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999045	NA	0	35	10	35
P-0055139-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63771598	63829639	Intron of ARID5B(+):12Kb after exon 4	Intron of ARID5B(+):83bp after exon 8	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.733+11518_c.1199+83dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	58041	NA	0	11	10	12
P-0055139-T01-IM6	SOMATIC	NTRK2	NTRK2	9	9	87322791	87560817	Exon 7 of NTRK2(+)	Intron of NTRK2(+):3Kb before exon 18	GRCh37	DUPLICATION	NTRK2 (NM_006180) rearrangement: c.392_c.1765-2560dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	238026	NA	0	5	10	5
P-0055141-T01-IM6	SOMATIC	FLT4	FLT4	5	4	180043447	190604602	Exon 23 of FLT4(-)	IGR: 24Kb before LINC01262(+)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(4;5)(q35.2;q35.3)(chr4:g.190604602::chr5:g.180043447)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0055141-T02-IM6	SOMATIC	FLT4	FLT4	5	4	180043447	190604602	Exon 23 of FLT4(-)	IGR: 24Kb before LINC01262(+)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(4;5)(q35.2;q35.3)(chr4:g.190604602::chr5:g.180043447)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	10	9
P-0055142-T01-IM6	SOMATIC	EWSR1	EWSR1	22	12	29694574	57911300	Intron of EWSR1(+):148bp before exon 15	5-UTR of DDIT3(-):709bp before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(12;22)(q13.3;q12.2)(chr12:g.57911300::chr22:g.29694574)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:DDIT3}	0	NA	0	12	10	14
P-0055143-T01-IM6	SOMATIC	NF1	NF1	17	17	29463918	29528152	Intron of NF1(+):19Kb before exon 2	Exon 10 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.61-19083_c.1160del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	64234	NA	0	4	10	4
P-0020006-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2213848	15241142	Exon 18 of DOT1L(+)	IGR: 15Kb before ILVBL(-)	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.1660_chr19:g.15241142inv	PRECISE		MANUAL_OK	5to5	-	13027294	NA	0	11	10	13
P-0020118-T01-IM6	SOMATIC	DNMT1	RANBP3	19	19	5969582	10265341	Intron of RANBP3(-):8Kb after exon 1	Exon 20 of DNMT1(-)	GRCh37	DELETION	DNMT1 (NM_001379) - RANBP3 (NM_007322) rearrangement: c.1705:DNMT1_c.22+8490:RANBP3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNMT1:RANBP3}	4295759	NA	0	14	10	16
P-0022397-T01-IM6	SOMATIC	KMT2C	KMT2C	7	4	151878590	188268934	Exon 36 of KMT2C(-)	3-UTR of LOC339975(-):158Kb after coding stop	GRCh37	TRANSLOCATION	KMT2C (NM_170606): t(4;7)(q35.2;q36.1)(chr4:g.188268934::chr7:g.151878590)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	61	10	60
P-0022507-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28624183	29588123	Intron of FLT3(-):48bp after exon 6	IGR: 11Kb before MTUS2(+)	GRCh37	INVERSION	FLT3 (NM_004119) Rearrangement : chr13:g.29588123_c.742+49:FLT3inv	PRECISE		MANUAL_OK	5to5	-	963940	NA	0	17	10	18
P-0023415-T01-IM6	SOMATIC	ATR	ATR	6	3	10039524	142188233	IGR: 357Kb before TFAP2A(-)	Exon 38 of ATR(-)	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;6)(q23;p24.3)(chr3:g.142188233::chr6:g.10039524)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	5
P-0023560-T01-IM6	SOMATIC	AXL	AXL	19	19	35782298	41727994	Promoter of MAG(+):690bp from tx start	Intron of AXL(+):33bp after exon 4	GRCh37	INVERSION	AXL (NM_021913) Rearrangement : chr19:g.35782298_c.586+33:AXLdel	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5945696	NA	0	15	10	15
P-0023767-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49348815	49426463	5-UTR of ARF3(-):16Kb before coding start	Exon 39 of KMT2D(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: chr12:g.49348815_c.12025inv	PRECISE		MANUAL_OK	3to3	-	77648	NA	0	10	10	10
P-0023767-T01-IM6	SOMATIC	AXIN1	AXIN1	16	1	360175	10744557	Intron of AXIN1(-):106bp before exon 4	Intron of CASZ1(-):9Kb after exon 4	GRCh37	TRANSLOCATION	AXIN1 (NM_003502) rearrangement: t(1;16)(p36.22;p13.3)(chr1:g.10744557::chr16:g.360175)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	9	4
P-0024365-T01-IM6	SOMATIC	PAK7	PAK7	20	20	9561348	11058657	Exon 4 of PAK7(-)	IGR: 189Kb before LOC339593(-)	GRCh37	INVERSION	PAK7 (NM_177990) Rearrangement : c.434:PAK7_chr20:g.11058657inv	PRECISE		MANUAL_OK	3to3	-	1497309	NA	0	5	10	5
P-0024365-T01-IM6	SOMATIC	RIN2	RTEL1	20	20	19975939	62321641	Intron of RIN2(+):1Kb before exon 10	Intron of RTEL1(+):5bp before exon 26	GRCh37	DELETION	RIN2 (NM_001242581) -RTEL1 (NM_032957) Rearrangement : c.2348-1384:RIN2_c.2338-6:RTEL1	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RIN2:RTEL1}	42345702	NA	0	13	10	14
P-0024726-T01-IM6	SOMATIC	EP300	EP300	22	22	41442701	41574711	IGR: 46Kb before MIR1281(+)	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: chr22:g.41442701_c.6996:EP300del	PRECISE		MANUAL_OK	3to5	-	132010	NA	0	19	10	21
P-0024726-T01-IM6	SOMATIC	XRCC2	XRCC2	7	7	151369240	152346154	Intron of PRKAG2(-):3Kb after exon 4	Exon 3 of XRCC2(-)	GRCh37	INVERSION	XRCC2 (NM_005431) rearrangement: chr7:g.151369240_c.416:XRCC2inv	PRECISE		MANUAL_OK	3to3	-	976914	NA	0	4	10	4
P-0024740-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111574560	111883237	Intron of ACOXL(+):12Kb after exon 9	Intron of BCL2L11(+):2Kb after exon 2	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.753+11588:ACOXL_c.394+1521:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ACOXL:BCL2L11}	308677	NA	0	12	10	13
P-0025026-T01-IM6	SOMATIC	EP300	EP300	22	22	41565574	41570996	Exon 26 of EP300(+)	Intron of EP300(+):1Kb after exon 29	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.4240_c.4779+1208dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5422	NA	0	23	10	23
P-0028696-T01-IM6	SOMATIC	BBC3	CCDC9	19	19	47735775	47762651	Exon 1 of BBC3(-)	Intron of CCDC9(+):731bp after exon 3	GRCh37	INVERSION	BBC3 (NM_001127240) - CCDC9 (NM_015603) rearrangement: c.85:BBC3_c.108+731:CCDC9inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BBC3:CCDC9}	26876	NA	0	5	7	5
P-0029267-T03-IM6	SOMATIC	NTRK3	NTRK3	15	15	85411017	88576241	Intron of ALPK3(+):324bp before exon 14	Exon 14 of NTRK3(-)	GRCh37	DELETION	NTRK3 (NM_001012338) rearrangement: c.1432:NTRK3_chr15:g.85411017del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3165224	NA	0	7	10	7
P-0029267-T03-IM6	SOMATIC	ERBB2	ERBB2	17	17	37879991	43293842	Intron of ERBB2(+):78bp after exon 18	IGR: 5Kb before FMNL1(+)	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.2208+78:ERBB2_chr17:g.43293842del	IMPPRECISE		MANUAL_OK	3to5	-	5413851	NA	0	9	0	9
P-0037553-T01-IM6	SOMATIC	SETD8	SETD8	12	10	123891871	69599715	Intron of SETD8(+):168bp before exon 8	Promoter of DNAJC12(-):43Kb from tx start	GRCh37	TRANSLOCATION	SETD8 (NM_020382) rearrangement: t(10;12)(q21.3;q24.31)(chr10:g.69599715::chr12:g.123891871)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {DNAJC12:SETD8}	0	NA	0	7	10	9
P-0038649-T01-IM6	SOMATIC	PDPK1	PDPK1	16	4	2647209	163884492	Exon 13 of PDPK1(+)	IGR: 163Kb before NAF1(-)	GRCh37	TRANSLOCATION	PDPK1 (NM_002613) rearrangement: t(4,16)(q32.2;p13.3)(chr4:g.163884492::chr16:g.2647209)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	36	10	39
P-0038960-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	11089445	18762371	Intron of PRH1(-):37Kb after exon 3	Intron of PIK3C2G(+):97bp before exon 30	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.3965-98:PIK3C2G_chr12:g.11089445inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PRH1:PIK3C2G}	7672926	NA	0	27	10	27
P-0038960-T01-IM6	SOMATIC	BRD4	BRD4	19	14	15364419	75937499	Intron of BRD4(-):543bp after exon 11	3-UTR of JDP2(+):38Kb after coding stop	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(14;19)(q24.3;p13.12)(chr14:g.75937499::chr19:g.15364419)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	89	10	89
P-0039012-T01-IM6	SOMATIC	EPCAM	EPCAM	2	2	47600603	47602415	Exon 2 of EPCAM(+)	Exon 4 of EPCAM(+)	GRCh37	DUPLICATION	EPCAM (NM_002354) rearrangement: c.78_c.468dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1812	NA	0	2	5	2
P-0039685-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113986804	116993803	Intron of PAX8(-):2Kb before exon 10	IGR: 1Mb before DPP10(+)	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1088-1971:PAX8_chr2:g.116993803del	PRECISE		MANUAL_OK	3to5	-	3006999	NA	0	17	10	45
P-0039798-T01-IM6	SOMATIC	NPM1	NPM1	5	5	170818335	170822189	Exon 3 of NPM1(+)	Intron of NPM1(+):2Kb after exon 6	GRCh37	DELETION	NPM1 (NM_002520) rearrangement: c.165_c.524+2207del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3854	NA	0	17	10	17
P-0039798-T01-IM6	SOMATIC	PPP6C	PPP6C	9	9	127951209	127962827	Intron of PPP6C(-):713bp after exon 1	5-UTR of RABEPK(+):2Kb before coding start	GRCh37	DELETION	PPP6C (NM_002721) rearrangement: c.75+714:PPP6C_chr9:g.127962827del	PRECISE		MANUAL_OK	3to5	-	11618	NA	0	67	10	77
P-0044349-T01-IM6	SOMATIC	DNMT1	DNMT1	19	1	10273346	231871724	Exon 12 of DNMT1(-)	Intron of DISC1(+):14Kb before exon 3	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(1;19)(q42.2;p13.2)(chr1:g.231871724::chr19:g.10273346)	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	12	0	12
P-0044349-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	211981994	212426526	IGR: 258Kb before ERBB4(-)	Intron of ERBB4(-):101bp after exon 20	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.2487+102:ERBB4_chr2:g.211981994del	PRECISE		MANUAL_OK	3to5	-	444532	NA	0	5	5	5
P-0044349-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39923140	39926293	Exon 8 of BCOR(-)	Intron of BCOR(-):2Kb before exon 7	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.3239-2441_c.3568del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3153	NA	0	12	10	12
P-0044349-T01-IM6	SOMATIC	BTK	BTK	X	X	100617798	121586039	Intron of BTK(-):121bp before exon 6	IGR: 732Kb before GRIA3(+)	GRCh37	DELETION	BTK (NM_000061) rearrangement: c.392-121:BTK_chrX:g.121586039del	PRECISE		MANUAL_OK	3to5	-	20968241	NA	0	12	8	13
P-0044451-T01-IM6	SOMATIC	GPS2	GPS2	17	17	7214985	7216398	Promoter of GPS2(-):992bp from tx start	Exon 10 of GPS2(-)	GRCh37	DELETION	GPS2 (NM_004489) rearrangement: c.850:GPS2_chr17:g.7214985del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1413	NA	0	168	10	191
P-0045544-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176132976	176135070	Exon 4 of RFWD2(-)	Intron of RFWD2(-):2Kb before exon 4	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.566-2043_c.617del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2094	NA	0	19	10	19
P-0045544-T01-IM6	SOMATIC	ATR	ATR	3	3	132133790	142284867	Promoter of DNAJC13(+):3Kb from tx start	Intron of ATR(-):95bp after exon 3	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.292+96:ATR_chr3:g.132133790del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	10151077	NA	0	7	0	7
P-0051066-T01-IM6	SOMATIC	NOTCH3	CNTNAP3	19	9	15273297	39157237	Exon 32 of NOTCH3(-)	Intron of CNTNAP3(-):7Kb before exon 10	GRCh37	TRANSLOCATION		PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	7	10	36
P-0051633-T01-IM6	SOMATIC	CIC	CIC	19	19	34729891	42791338	IGR: 16Kb before KIAA0355(+)	Exon 3 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.398:CIC_chr19:g.34729891del	PRECISE		MANUAL_OK	3to5	-	8061447	NA	0	7	10	7
P-0055120-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99447150	99482511	Intron of IGF1R(+):4Kb after exon 5	Exon 18 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.1247+4300_c.3379del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	35361	NA	0	4	6	4
P-0029327-T03-IM6	SOMATIC	ICOSLG	ICOSLG	21	21	45514280	45658493	Intron of TRAPPC10(+):166bp after exon 20	Intron of ICOSLG(-):122bp before exon 2	GRCh37	DUPLICATION	ICOSLG (NM_015259) rearrangement: c.15-122:ICOSLG_chr21:g.45514280dup	PRECISE		MANUAL_OK	5to3	-	144213	NA	0	16	10	16
P-0055167-T01-IM6	SOMATIC	COL23A1	FLT4	5	5	177693795	180053374	Intron of COL23A1(-):512bp after exon 8	Intron of FLT4(-):109bp before exon 9	GRCh37	DUPLICATION	COL23A1 (NM_173465) - FLT4 (NM_182925) rearrangement: c.522+513:COL23A1_c.1104-109:FLT4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {COL23A1:FLT4}	2359579	NA	0	5	7	5
P-0055183-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315558	43610308	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):124bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1798:KIF5B_c.2136+124:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294750	NA	0	128	10	161
P-0055183-T02-IM6	SOMATIC	KIF5B	RET	10	10	32315558	43610308	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):124bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1798:KIF5B_c.2136+124:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294750	NA	0	193	10	265
P-0020458-T04-IM6	SOMATIC	EZR	ROS1	6	6	117646033	159191588	Intron of ROS1(-):455bp before exon 34	Intron of EZR(-):207bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+208:EZR_c.5558-455:ROS1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41545555	NA	0	28	0	28
P-0029736-T02-IM6	SOMATIC	WT1	WT1	11	11	32439064	32446427	Intron of WT1(-):58bp after exon 4	Intron of WT1(-):3Kb after exon 3	GRCh37	INVERSION	WT1 (NM_024426) rearrangement: c.872+3075_c.950+59inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7363	NA	0	2	5	2
P-0034995-T02-IM6	SOMATIC	BLM	BLM	15	15	46788278	91290926	IGR: 688Kb before SEMA6D(+)	Intron of BLM(+):206bp after exon 2	GRCh37	INVERSION	BLM (NM_000057) rearrangement: c.98+206:BLM_chr15:g.46788278inv	PRECISE		MANUAL_OK	3to3	-	44502648	NA	0	138	10	136
P-0034995-T02-IM6	SOMATIC	AURKB	AURKB	17	17	8110836	8121043	Intron of AURKB(-):52bp after exon 4	Promoter of LINC00324(-):3Kb from tx start	GRCh37	DELETION	AURKB (NM_004217) rearrangement: c.206+53:AURKB_chr17:g.8121043del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {LINC00324:AURKB}	10207	NA	0	9	10	10
P-0034995-T02-IM6	SOMATIC	GNAS	GNAS	20	6	57470717	105947016	Exon 2 of GNAS(+)	IGR: 222Kb before PREP(-)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(6;20)(q21;q13.32)(chr6:g.105947016::chr20:g.57470717)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	29	10	29
P-0034995-T02-IM6	SOMATIC	AMER1	SS18L1	X	20	63411326	60719519	Exon 2 of AMER1(-)	Intron of SS18L1(+):574bp after exon 1	GRCh37	TRANSLOCATION	AMER1 (NM_152424) - SS18L1 (NM_198935) rearrangement: t(20;X)(q13.33;q11.2)(chr20:g.60719519::chrX:g.63411326)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {AMER1:SS18L1}	0	NA	0	48	10	50
P-0052035-T03-IM6	SOMATIC	EML4	ALK	2	2	29447656	42552773	Intron of ALK(-):670bp after exon 19	Intron of EML4(+):79bp after exon 19	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2242+79:EML4_c.3172+671:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13105117	NA	0	42	10	41
P-0052035-T03-IM6	SOMATIC	XRCC2	XRCC2	7	7	151554813	152346283	Intron of PRKAG2(-):19Kb after exon 1	Exon 3 of XRCC2(-)	GRCh37	INVERSION	XRCC2 (NM_005431) rearrangement: c.287:XRCC2_chr7:g.151554813inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	791470	NA	0	42	10	44
P-0055111-T02-IM6	SOMATIC	BMPR1A	BMPR1A	12	10	52525559	88672076	IGR: 37Kb before KRT80(-)	Exon 8 of BMPR1A(+)	GRCh37	TRANSLOCATION	BMPR1A (NM_004329) rearrangement: t(10;12)(q23.2;q13.13)(chr10:g.88672076::chr12:g.52525559)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	25
P-0055111-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3690981	3900549	IGR: 12Kb before DNASE1(+)	Exon 2 of CREBBP(-)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.547:CREBBP_chr16:g.3690981inv	PRECISE		MANUAL_OK	3to3	-	209568	NA	1	70	10	69
P-0055189-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67200347	67202873	Intron of RPS6KB2(+):39bp after exon 7	3-UTR of RPS6KB2(+):7Kb after coding stop	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.616+39:RPS6KB2_chr11:g.67202873inv	IMPPRECISE		MANUAL_OK	3to3	-	2526	NA	0	11	0	11
P-0055193-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1618404	1619127	Intron of TCF3(-):705bp after exon 15	Exon 15 of TCF3(-)	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1433_c.1450+706inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	723	NA	0	6	0	6
P-0055197-T01-IM6	SOMATIC	POLE	ALPK3	15	12	85380089	133212439	Intron of ALPK3(+):2Kb before exon 4	Intron of POLE(-):38bp after exon 42	GRCh37	TRANSLOCATION	POLE (NM_006231) - ALPK3 (NM_020778) rearrangement: t(12;15)(q24.33;q25.3)(chr12:g.133212439::chr15:g.85380089)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {POLE:ALPK3}	0	NA	0	6	7	6
P-0055201-T01-IM6	SOMATIC	PDCD1	PDCD1	7	2	143148998	242795124	5-UTR of EPHA1-AS1(+):72Kb before coding start	Exon 2 of PDCD1(-)	GRCh37	TRANSLOCATION	PDCD1 (NM_005018) rearrangement: t(2;7)(q37.3;q35)(chr2:g.242795124::chr7:g.143148998)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EPHA1-AS1:PDCD1}	0	NA	0	176	10	176
P-0055202-T01-IM6	SOMATIC	FGFR2	SH3GLB1	10	1	123242019	87191292	Intron of FGFR2(-):1Kb after exon 17	Intron of SH3GLB1(+):1Kb after exon 4	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - SH3GLB1 (NM_001206651) rearrangement: t(1;10)(p22.3;q26.13)(chr1:g.87191292::chr10:g.123242019)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:SH3GLB1}	0	NA	0	16	10	18
P-0055203-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263367	41266469	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.266:CTNNB1_chr3:g.41263367del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3102	NA	0	12	10	12
P-0055207-T01-IM6	SOMATIC	SRC	SRC	20	20	36025588	36026210	Intron of SRC(+):513bp before exon 9	Exon 9 of SRC(+)	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.704-514_c.812inv	PRECISE		MANUAL_OK	5to5	-	622	NA	0	6	8	6
P-0055208-T01-IM6	SOMATIC	ESR1	ESR1	6	6	139460879	152129161	Intron of HECA(+):4Kb after exon 1	Exon 2 of ESR1(+)	GRCh37	INVERSION	ESR1 (NM_001122740) rearrangement: c.114:ESR1_chr6:g.139460879inv	PRECISE		MANUAL_OK	5to5	-	12668282	NA	0	7	10	7
P-0055213-T01-IM6	SOMATIC	ASPSCR1	TFE3	X	17	48895569	79960990	Exon 5 of TFE3(-)	Intron of ASPSCR1(+):6Kb before exon 8	GRCh37	TRANSLOCATION	ASPSCR1 (NM_001251888) - TFE3 (NM_006521) rearrangement: t(17;X)(q25.3;p11.23)(chr17:g.79960990::chrX:g.48895569)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASPSCR1:TFE3}	0	NA	0	26	10	26
P-0055215-T01-IM6	SOMATIC	FGFR2	GRID1	10	10	87794915	123323934	Intron of GRID1(-):104Kb after exon 4	Intron of FGFR2(-):81bp after exon 4	GRCh37	DELETION	FGFR2 (NM_000141) - GRID1 (NM_017551) rearrangement: c.454+82:FGFR2_c.726+103661:GRID1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGFR2:GRID1}	35529019	NA	0	7	0	7
P-0055216-T01-IM6	SOMATIC	EP300	EP300	22	22	41561868	41568714	Intron of EP300(+):734bp before exon 23	Intron of EP300(+):47bp after exon 28	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.3807-735_c.4617+47dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	6846	NA	0	4	5	4
P-0055216-T01-IM6	SOMATIC	KDR	KDR	4	4	55981101	55986026	Exon 5 of KDR(-)	Intron of KDR(-):1Kb before exon 3	GRCh37	DUPLICATION	KDR (NM_002253) rearrangement: c.162-1059_c.598dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4925	NA	0	8	10	9
P-0055224-T01-IM6	SOMATIC	EIF4A2	MMS22L	6	3	97717988	186507027	Intron of MMS22L(-):120bp before exon 7	Exon 11 of EIF4A2(+)	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) - MMS22L (NM_198468) rearrangement: t(3;6)(q27.3;q16.1)(chr3:g.186507027::chr6:g.97717988)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EIF4A2:MMS22L}	0	NA	0	12	10	12
P-0055224-T01-IM6	SOMATIC	AGO2	AGO2	8	5	141572809	7905448	Intron of AGO2(-):76bp before exon 4	IGR: 36Kb before MTRR(+)	GRCh37	TRANSLOCATION	AGO2 (NM_012154) rearrangement: t(5;8)(p15.31;q24.3)(chr5:g.7905448::chr8:g.141572809)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	26	10	27
P-0055228-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	15	11144853	70778555	Exon 28 of SMARCA4(+)	IGR: 129Kb before SALRNA3(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(15;19)(q23;p13.2)(chr15:g.70778555::chr19:g.11144853)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0055228-T01-IM6	SOMATIC	HIST1H1C	HIST1H1C	6	2	26056377	191036401	Exon 1 of HIST1H1C(-)	5-UTR of C2orf88(+):28Kb before coding start	GRCh37	TRANSLOCATION	HIST1H1C (NM_005319) rearrangement: t(2;6)(q32.2;p22.2)(chr2:g.191036401::chr6:g.26056377)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	6	7
P-0023712-T02-IM6	SOMATIC	DCUN1D1	DCUN1D1	18	3	30979666	182665457	Intron of CCDC178(-):2Kb before exon 4	Intron of DCUN1D1(-):37bp before exon 5	GRCh37	TRANSLOCATION	DCUN1D1 (NM_020640) rearrangement: t(3;18)(q26.33;q12.1)(chr3:g.182665457::chr18:g.30979666)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CCDC178:DCUN1D1}	0	NA	0	48	10	49
P-0045300-T02-IM6	SOMATIC	RAD21	RAD21	8	8	117866350	117874662	Intron of RAD21(-):133bp after exon 9	Intron of RAD21(-):483bp before exon 4	GRCh37	DUPLICATION	RAD21 (NM_006265) rearrangement: c.275-483_c.1161+134dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	8312	NA	0	7	8	8
P-0054044-T02-IM6	SOMATIC	CSF3R	CSF3R	1	1	36929195	36937914	Promoter of CSF3R(-):2Kb from tx start	Exon 8 of CSF3R(-)	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.922:CSF3R_chr1:g.36929195inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	8719	NA	0	86	10	112
P-0030397-T03-IM6	SOMATIC	WT1	EWSR1	22	11	29683503	32415425	Intron of EWSR1(+):380bp after exon 8	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32415425::chr22:g.29683503)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {WT1:EWSR1}	0	NA	0	42	10	63
P-0038248-T08-IM6	SOMATIC	EWSR1	EWSR1	X	22	18240954	29683864	Promoter of BEND2(-):60Kb from tx start	Intron of EWSR1(+):730bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p22.13)(chr22:g.29683864::chrX:g.18240954)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:BEND2}	0	NA	0	47	10	112
P-0039109-T02-IM6	SOMATIC	RET	RET	10	10	36583307	43610707	IGR: 516Kb before LINC01452(+)	Intron of RET(+):523bp after exon 11	GRCh37	DELETION	RET (NM_020975) rearrangement: c.2136+523:RET_chr10:g.36583307del	PRECISE		MANUAL_OK	3to5	-	7027400	NA	0	13	10	46
P-0039109-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1725375	1808760	Intron of TACC3(+):65bp after exon 2	Intron of FGFR3(+):82bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-83:FGFR3_c.162+65:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	83385	NA	0	152	10	163
P-0052411-T03-IM6	SOMATIC	KIAA1549	BRAF	7	7	138548498	140493530	Intron of KIAA1549(-):2Kb before exon 16	Intron of BRAF(-):577bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4930-2296:KIAA1549_c.1140+578:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1945032	NA	0	12	7	12
P-0054566-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39877343	42867035	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):530bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-530:TMPRSS2_c.40-59799:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2989692	NA	0	64	10	67
P-0055012-T02-IM6	SOMATIC	PTPRS	PTPRS	19	5	5206797	115399011	Exon 38 of PTPRS(-)	IGR: 12Kb before ARL14EPL(+)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(5;19)(q23.1;p13.3)(chr5:g.115399011::chr19:g.5206797)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	89	10	97
P-0055025-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187535431	187611707	Exon 12 of FAT1(-)	Intron of FAT1(-):16Kb after exon 2	GRCh37	DELETION	FAT1 (NM_005245) rearrangement:  c.9143_c.3265+16010del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	76276	NA	0	14	10	16
P-0055143-T03-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9840157	9927827	IGR: 7Kb before GRIN2A(-)	Intron of GRIN2A(-):134bp after exon 8	GRCh37	DELETION	GRIN2A (NM_001134407) rearrangement: g.9840157_c.1777+135del	PRECISE		MANUAL_OK	3to5	-	87670	NA	0	12	10	12
P-0055143-T03-IM6	SOMATIC	NF1	NF1	17	17	29607329	29670032	Intron of NF1(+):15Kb after exon 36	Exon 48 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4835+14972_c.7068del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	62703	NA	0	75	10	79
P-0055270-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39944377	42869553	Intron of ERG(-):3Kb after exon 3	Intron of TMPRSS2(-):492bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.126+493:TMPRSS2_c.39+3209:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2925176	NA	0	78	10	82
P-0055276-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226524	2227527	Exon 27 of DOT1L(+)	Intron of DOT1L(+):401bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.4004_c.4606+401del	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1003	NA	0	7	0	7
P-0055285-T02-IM6	SOMATIC	XPO1	USP34	2	2	61448460	61708335	Intron of USP34(-):176bp after exon 66	Exon 24 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.3054:XPO1_c.7899+177:USP34del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPO1:USP34}	259875	NA	0	18	10	19
P-0055286-T02-IM6	SOMATIC	ATR	ATR	3	3	81341430	142215294	IGR: 197Kb before GBE1(-)	Exon 34 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.5807:ATR_chr3:g.81341430del	PRECISE		MANUAL_OK	3to5	-	60873864	NA	1	2	8	4
P-0055289-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10607516	10610473	Intron of KEAP1(-):3Kb after exon 2	Exon 2 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.237_c.639+2555del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2957	NA	0	116	10	123
P-0055320-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68762435	68855940	IGR: 9Kb before CDH1(+)	Exon 12 of CDH1(+)	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.1748:CDH1_chr16:g.68762435del	PRECISE		MANUAL_OK	3to5	-	93505	NA	0	15	10	18
P-0055333-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	153139099	157528831	IGR: 67Kb before VIP(+)	Exon 20 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.6556:ARID1B_chr6:g.153139099inv	PRECISE		MANUAL_OK	3to3	-	4389732	NA	0	123	10	123
P-0055374-T01-IM6	SOMATIC	RARA	RARA	17	17	38510797	38783681	Intron of RARA(+):39bp after exon 7	Promoter of SMARCE1(-):294bp from tx start	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.1012+39:RARA_chr17:g.38783681inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {RARA:SMARCE1}	272884	NA	0	25	10	25
P-0051953-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29687604	51200433	Intron of EWSR1(+):16bp after exon 10	Intron of ATF1(+):3Kb before exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51200433::chr22:g.29687604)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:ATF1}	0	NA	0	55	10	55
P-0055363-T01-IM6	SOMATIC	CSDE1	CSDE1	6	1	51262602	115275398	IGR: 218Kb before PKHD1(-)	Exon 11 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;6)(p13.2;p12.3)(chr1:g.115275398::chr6:g.51262602)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	38	10	37
P-0055366-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86672230	86673536	Exon 16 of RASA1(+)	Intron of RASA1(+):676bp before exon 18	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2032_c.2345-677del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1306	NA	0	2	10	2
P-0055377-T01-IM6	SOMATIC	MCL1	MCL1	1	1	150550843	152047565	Exon 2 of MCL1(-)	IGR: 9Kb before TCHHL1(-)	GRCh37	INVERSION	MCL1 (NM_021960) rearrangement: c.813:MCL1_chr1:g.152047565inv	PRECISE		MANUAL_OK	5to5	-	1496722	NA	0	16	10	19
P-0055377-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52718329	52719831	Intron of PPP2R1A(+):702bp before exon 7	Exon 9 of PPP2R1A(+)	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.808-703_c.1043inv	PRECISE		MANUAL_OK	5to5	-	1502	NA	0	82	10	104
P-0019689-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	18990430	38148197	IGR: 51Kb before LOC100128993(-)	Intron of WHSC1L1(-):2bp before exon 17	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement : g.18990430_c.2916-2:WHSC1L1inv	PRECISE		MANUAL_OK	3to3	-	19157767	NA	0	12	10	11
P-0055173-T02-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72821884	72844684	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):791bp after exon 7	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3864+792_c.10291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22800	NA	0	46	10	50
P-0055173-T02-IM6	SOMATIC	STK11	STK11	19	19	1138510	1226384	Intron of SBNO2(-):9Kb after exon 4	Intron of STK11(+):68bp before exon 9	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.1109-69:STK11_chr19:g.1138510del	PRECISE		MANUAL_OK	3to5	-	87874	NA	0	38	10	38
P-0055400-T01-IM6	SOMATIC	BCOR	BCOR	X	8	39933849	27544982	Exon 4 of BCOR(-)	IGR: 14Kb before MIR3622B(-)	GRCh37	TRANSLOCATION	BCOR (NM_001123385) rearrangement: t(8;X)(p21.1;p11.4)(chr8:g.27544982::chrX:g.39933849)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0055402-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57859326	76607874	Intron of GLI1(+):63bp before exon 6	IGR: 130Kb before BBS10(-)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.535-64:GLI1_chr12:g.76607874inv	PRECISE		MANUAL_OK	5to5	-	18748548	NA	0	108	10	121
P-0055402-T01-IM6	SOMATIC	ROS1	ROS1	6	6	108025101	117706726	3-UTR of SCML4(-):1Kb after coding stop	Intron of ROS1(-):119bp after exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.2304+120:ROS1_chr6:g.108025101del	PRECISE		MANUAL_OK	3to5	-	9681625	NA	0	32	10	33
P-0055449-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36214939	36872363	Intron of KMT2B(+):31bp after exon 8	Promoter of ZFP14(-):47Kb from tx start	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.3334+31:KMT2B_chr19:g.36872363del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	657424	NA	0	2	3	2
P-0055449-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098084	178099544	Intron of NFE2L2(-):17bp before exon 3	Intron of NFE2L2(-):545bp before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-545_c.313-17del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1460	NA	0	20	10	21
P-0055458-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246083505	246091498	Intron of SMYD3(-):5Kb before exon 8	Intron of SMYD3(-):163bp before exon 7	GRCh37	DUPLICATION	SMYD3 (NM_001167740) rearrangement: c.600-163_c.703-4563dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	7993	NA	0	5	9	7
P-0055459-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59934461	59937242	Exon 4 of BRIP1(-)	Exon 3 of BRIP1(-)	GRCh37	DUPLICATION	BRIP1 (NM_032043) rearrangement: c.120_c.337dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2781	NA	0	2	9	2
P-0055459-T01-IM6	SOMATIC	PRKAR1A	PRKAR1A	17	17	66524040	66526088	Exon 8 of PRKAR1A(+)	Exon 10 of PRKAR1A(+)	GRCh37	INVERSION	PRKAR1A (NM_212471) rearrangement: c.768_c.919inv	PRECISE		MANUAL_OK	5to5	-	2048	NA	0	2	7	2
P-0055491-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42862220	42867133	Intron of TMPRSS2(-):700bp before exon 4	Intron of TMPRSS2(-):628bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-628_c.350-700del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4913	NA	0	21	10	22
P-0055493-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30675230	30677101	Exon 9 of MDC1(-)	Intron of MDC1(-):967bp before exon 8	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.2222-967_c.3015del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1871	NA	0	6	9	7
P-0055497-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	1	15303327	9651126	Exon 3 of NOTCH3(-)	Intron of TMEM201(+):2Kb after exon 1	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(1;19)(p36.22;p13.12)(chr1:g.9651126::chr19:g.15303327)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	41	10	41
P-0055498-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55174679	55222190	Intron of EGFR(+):35Kb before exon 2	Intron of EGFR(+):345bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-35300_c.889+345del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	47511	NA	0	171	10	175
P-0022387-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1741205	1808707	Intron of TACC3(+):223bp before exon 11	Intron of FGFR3(+):46bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+46:FGFR3_c.1942-224:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67502	NA	0	356	10	408
P-0043588-T03-IM6	SOMATIC	PIK3CB	PIK3CB	3	3	138402476	142307679	Intron of PIK3CB(-):43bp after exon 16	IGR: 8Kb before PLS1(+)	GRCh37	INVERSION	PIK3CB (NM_006219) rearrangement: c.2425+44:PIK3CB_chr3:g.142307679inv	PRECISE		MANUAL_OK	5to5	-	3905203	NA	0	10	10	10
P-0046178-T03-IM6	SOMATIC	BCL6	BCL6	3	3	27791931	187447757	IGR: 34Kb before EOMES(-)	Exon 5 of BCL6(-)	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.436:BCL6_chr3:g.27791931inv	PRECISE		MANUAL_OK	5to5	-	159655826	NA	0	24	10	29
P-0046178-T03-IM6	SOMATIC	EPHA3	MAP3K13	3	3	89334309	185161077	Intron of EPHA3(+):56Kb before exon 4	Intron of MAP3K13(+):155bp before exon 4	GRCh37	INVERSION	EPHA3 (NM_005233) - MAP3K13 (NM_004721) rearrangement: c.815-55757:EPHA3_c.660-156:MAP3K13inv	PRECISE		MANUAL_OK	5to5	-	95826768	NA	0	24	10	26
P-0047756-T02-IM6	SOMATIC	CDK4	CDK4	12	12	57774589	58144535	IGR: 54Kb before INHBC(+)	Exon 5 of CDK4(-)	GRCh37	DELETION	CDK4 (NM_000075) rearrangement: c.536:CDK4_chr12:g.57774589del	PRECISE		MANUAL_OK	3to5	-	369946	NA	0	80	10	84
P-0052339-T02-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	2	67202593	99734004	Exon 15 of RPS6KB2(+)	5-UTR of TSGA10(-):119Kb before coding start	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) rearrangement: t(2;11)(q11.2;q13.2)(chr2:g.99734004::chr11:g.67202593)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TSGA10:RPS6KB2}	0	NA	0	8	10	10
P-0052465-T01-IM6	SOMATIC	NF1	NF1	17	17	29546027	29550530	Exon 14 of NF1(+)	Exon 16 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1532_c.1790dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4503	NA	0	8	8	9
P-0055397-T01-IM6	SOMATIC	ERF	ERF	19	11	42754179	30272374	Intron of ERF(-):85bp before exon 3	IGR: 20Kb before FSHB(+)	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(11;19)(p14.1;q13.2)(chr11:g.30272374::chr19:g.42754179)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	10	16
P-0055461-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72991689	73119842	Exon 2 of ZFHX3(-)	IGR: 6Kb before HCCAT5(+)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2356:ZFHX3_chr16:g.73119842del	PRECISE		MANUAL_OK	3to5	-	128153	NA	0	4	10	4
P-0055462-T01-IM6	SOMATIC	CCND2	ETV6	12	12	4389859	12013636	Intron of CCND2(+):2Kb after exon 3	Intron of ETV6(+):7Kb after exon 4	GRCh37	INVERSION	CCND2 (NM_001759) - ETV6 (NM_001987) rearrangement: c.571+1774:CCND2_c.463+7141:ETV6inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7623777	NA	0	10	10	10
P-0055465-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39844438	42876359	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3518:TMPRSS2_c.18+25849:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3031921	NA	0	25	10	28
P-0052609-T03-IM6	SOMATIC	SOS1	SOS1	7	2	143641474	39239441	IGR: 9Kb before OR2F2(+)	Exon 14 of SOS1(-)	GRCh37	TRANSLOCATION	SOS1 (NM_005633) rearrangement: t(2;7)(p22.1;q35)(chr2:g.39239441::chr7:g.143641474)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	5	0	5
P-0054077-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39827435	42876255	Intron of ERG(-):10Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3622:TMPRSS2_c.19-9891:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3048820	NA	0	8	10	9
P-0054258-T02-IM6	SOMATIC	AR	F13A1	X	6	66931326	6107404	Exon 4 of AR(+)	IGR: 37Kb before F13A1(-)	GRCh37	TRANSLOCATION	AR (NM_000044) rearrangement: t(6;X)(p25.1;q12)(chr6:g.6107404::chrX:g.66931326)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	27
P-0054475-T03-IM6	SOMATIC	EWSR1	WT1	22	11	29688387	32414704	Intron of EWSR1(+):89bp before exon 12	Intron of WT1(-):403bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414704::chr22:g.29688387)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	108	10	106
P-0055099-T03-IM6	SOMATIC	KIAA1549	BRAF	7	7	138551364	140490663	Intron of KIAA1549(-):1Kb after exon 15	Intron of BRAF(-):3Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4929+1357:KIAA1549_c.1141-3279:BRAFdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1939299	NA	0	4	0	7
P-0055170-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76855130	76855669	Intron of ATRX(-):70bp after exon 24	Intron of ATRX(-):233bp after exon 23	GRCh37	DUPLICATION	ATRX (NM_000489) rearrangement: c.5697+234_c.5786+71dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	539	NA	0	78	10	79
P-0055426-T02-IM6	SOMATIC	AGO2	AGO2	12	8	112194814	141549589	3-UTR of ACAD10(+):64Kb after coding stop	Intron of AGO2(-):36bp before exon 16	GRCh37	TRANSLOCATION	AGO2 (NM_012154) rearrangement: t(8;12)(q24.3;q24.12)(chr8:g.141549589::chr12:g.112194814)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	8	10	8
P-0055519-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684024	32416169	Intron of EWSR1(+):570bp before exon 9	Intron of WT1(-):2Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416169::chr22:g.29684024)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	25	10	24
P-0055520-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118374735	129242161	Exon 27 of KMT2A(+)	IGR: 4Kb before BARX2(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.8128:KMT2A_chr11:g.129242161inv	PRECISE		MANUAL_OK	3to3	-	10867426	NA	0	4	8	4
P-0055520-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271586	124087696	Intron of FGFR1(-):45bp before exon 18	Intron of TBC1D31(+):2Kb before exon 2	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.2280-45:FGFR1_chr8:g.124087696dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	85816110	NA	0	50	10	51
P-0055525-T01-IM6	SOMATIC	MYOD1	MYOD1	11	11	9770127	17742639	Intron of SWAP70(+):506bp before exon 10	Intron of MYOD1(+):112bp after exon 2	GRCh37	INVERSION	MYOD1 (NM_002478) rearrangement: c.709+112:MYOD1_chr11:g.9770127inv	PRECISE		MANUAL_OK	5to5	-	7972512	NA	0	18	10	18
P-0055533-T01-IM6	SOMATIC	B2M	B2M	15	15	45006075	45007671	Intron of B2M(+):2Kb before exon 2	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-1546_c.118del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1596	NA	0	29	10	29
P-0055533-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139404567	139406689	Intron of NOTCH1(-):154bp before exon 18	Intron of NOTCH1(-):783bp after exon 15	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.2467+784_c.2741-154del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2122	NA	0	17	10	17
P-0055535-T01-IM6	SOMATIC	TAP1	TAP1	6	6	32820435	36136296	Intron of TAP1(-):156bp before exon 2	IGR: 28Kb before BRPF3(+)	GRCh37	INVERSION	TAP1 (NM_000593) rearrangement: c.779-156:TAP1_chr6:g.36136296inv	PRECISE		MANUAL_OK	3to3	-	3315861	NA	0	37	10	37
P-0055542-T01-IM6	SOMATIC	PALB2	PALB2	16	16	23647121	23647913	Exon 4 of PALB2(-)	Intron of PALB2(-):258bp before exon 4	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.212-258_c.746del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	792	NA	0	4	0	4
P-0055542-T01-IM6	SOMATIC	ASXL1	ASXL1	20	18	31019347	880444	Intron of ASXL1(+):38bp before exon 9	IGR: 24Kb before ADCYAP1(+)	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) rearrangement: t(18;20)(p11.32;q11.21)(chr18:g.880444::chr20:g.31019347)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	30
P-0055553-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123164518	123181440	Intron of STAG2(+):292bp before exon 5	Intron of STAG2(+):85bp after exon 9	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.124-293_c.819+85dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	16922	NA	0	3	5	3
P-0055554-T01-IM6	SOMATIC	STK11	STK11	19	19	1202837	1207067	Promoter of STK11(+):3Kb from tx start	Exon 1 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.155:STK11_chr19:g.1202837del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4230	NA	0	122	10	127
P-0055556-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968229	21971728	Exon 3 of CDKN2A(-)	Intron of CDKN2A(-):521bp before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.470:CDKN2A_c.194-521:CDKN2Adel	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3499	NA	0	9	0	9
P-0055392-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39864660	42874567	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+5627:ERG_c.56-4451:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3009907	NA	0	16	10	15
P-0001947-T03-IM6	SOMATIC	NAB2	STAT6	12	12	57487383	57493199	Intron of NAB2(+):2bp after exon 6	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+2:NAB2_c.1769:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5816	NA	0	24	10	24
P-0055434-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974493	22017674	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):103Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3286:CDKN2A_chr9:g.22017674del	PRECISE		MANUAL_OK	3to5	-	43181	NA	0	4	8	4
P-0055620-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187552642	187629158	Intron of FAT1(-):2Kb after exon 7	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.1824_c.4323+2196del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	76516	NA	0	12	10	14
P-0055620-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117663683	117882165	Exon 28 of ROS1(-)	Intron of DCBLD1(+):9Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.4549:ROS1_chr6:g.117882165del	PRECISE		MANUAL_OK	3to5	-	218482	NA	0	9	10	9
P-0055637-T01-IM6	SOMATIC	ARHGAP26	ETV6	12	5	12013736	142309261	Intron of ETV6(+):7Kb after exon 4	Intron of ARHGAP26(+):2Kb before exon 11	GRCh37	TRANSLOCATION	ARHGAP26 (NM_015071) - ETV6 (NM_001987) rearrangement: t(5;12)(q31.3;p13.2)(chr5:g.142309261::chr12:g.12013736)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARHGAP26:ETV6}	0	NA	0	23	10	23
P-0055637-T01-IM6	SOMATIC	IDH2	IDH2	22	15	41763179	90631736	Promoter of TEF(+):157bp from tx start	Intron of IDH2(-):2bp before exon 5	GRCh37	TRANSLOCATION	IDH2 (NM_002168) rearrangement: t(15;22)(q26.1;q13.2)(chr15:g.90631736::chr22:g.41763179)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	10	10	10
P-0053879-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29688409	128665052	Intron of EWSR1(+):67bp before exon 12	Intron of FLI1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128665052::chr22:g.29688409)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	110	10	112
P-0055311-T02-IM6	SOMATIC	SRSF2	SRSF2	17	11	74732435	99250545	Exon 2 of SRSF2(-)	5-UTR of CNTN5(+):176Kb before coding start	GRCh37	TRANSLOCATION	SRSF2 (NM_003016) rearrangement: t(11;17)(q22.1;q25.1)(chr11:g.99250545::chr17:g.74732435)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	20	10	20
P-0055621-T01-IM6	SOMATIC	SLAMF6	NTRK1	1	1	156836411	160468022	Intron of NTRK1(+):290bp before exon 4	Intron of SLAMF6(-):7Kb before exon 2	GRCh37	INVERSION	SLAMF6 (NM_052931) - NTRK1 (NM_002529) rearrangement: c.50-1839:SLAMF6_c.360-291:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SLAMF6:NTRK1}	3631611	NA	0	15	0	22
P-0055621-T02-IM6	SOMATIC	SLAMF6	NTRK1	1	1	156836411	160468022	Intron of NTRK1(+):290bp before exon 4	Intron of SLAMF6(-):7Kb before exon 2	GRCh37	INVERSION	SLAMF6 (NM_052931) - NTRK1 (NM_002529) rearrangement: c.50-1839:SLAMF6_c.360-291:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SLAMF6:NTRK1}	3631611	NA	0	32	0	36
P-0055685-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39928670	42872365	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2249:TMPRSS2_c.39+18916:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2943695	NA	0	179	10	185
P-0055685-T01-IM6	SOMATIC	KMT2C	INVS	9	7	103003709	151868139	Intron of INVS(+):1Kb before exon 7	Intron of KMT2C(-):209bp after exon 40	GRCh37	TRANSLOCATION	KMT2C (NM_170606) - INVS (NM_014425) rearrangement: t(7;9)(q36.1;q31.1)(chr7:g.151868139::chr9:g.103003709)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KMT2C:INVS}	0	NA	0	6	10	6
P-0055689-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27012260	27107136	IGR: 10Kb before ARID1A(+)	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.6747:ARID1A_chr1:g.27012260del	PRECISE		MANUAL_OK	3to5	-	94876	NA	0	83	10	90
P-0055689-T01-IM6	SOMATIC	RPTOR	RPTOR	17	10	78914225	115894331	Intron of RPTOR(+):70bp before exon 25	Intron of CCDC186(-):340bp after exon 10	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(10;17)(q25.3;q25.3)(chr10:g.115894331::chr17:g.78914225)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	13	0	14
P-0055690-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52440183	52440737	Intron of BAP1(-):85bp after exon 9	Intron of BAP1(-):107bp after exon 8	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.659+108_c.783+86dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	554	NA	0	59	10	61
P-0055692-T01-IM6	SOMATIC	GLI1	GLI1	12	11	57859010	65266564	Exon 5 of GLI1(+)	5-UTR of MALAT1(+):7Kb before coding start	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(11;12)(q13.1;q13.3)(chr11:g.65266564::chr12:g.57859010)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MALAT1:GLI1}	0	NA	0	118	10	125
P-0055694-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1808723	1813349	Intron of FGFR3(+):62bp after exon 17	Promoter of FGFR3(+):18Kb from tx start	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.2274+62:FGFR3_chr4:g.1813349del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4626	NA	0	57	10	58
P-0055699-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968332	22853738	Intron of CDKN2A(-):91bp before exon 3	IGR: 208Kb before LINC01239(+)	GRCh37	INVERSION	CDKN2A (NM_000077) rearrangement: c.458-91:CDKN2A_chr9:g.22853738inv	PRECISE		MANUAL_OK	3to3	-	885406	NA	0	10	10	10
P-0055703-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88505980	12024785	Intron of NTRK3(-):22Kb before exon 15	Intron of ETV6(+):2Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12024785::chr15:g.88505980)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	12	0	12
P-0055705-T01-IM6	SOMATIC	AKT3	AKT3	1	1	218326684	243716405	IGR: 110Kb before LOC101929631(+)	Intron of AKT3(-):160bp before exon 10	GRCh37	INVERSION	AKT3 (NM_005465) rearrangement: c.949-160:AKT3_chr1:g.218326684inv	PRECISE		MANUAL_OK	3to3	-	25389721	NA	0	25	10	24
P-0055707-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876892	42874865	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4749:TMPRSS2_c.40-59348:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997973	NA	0	72	10	74
P-0055712-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39834430	42875362	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4515:TMPRSS2_c.19-16886:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040932	NA	0	65	10	66
P-0055712-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67591237	138673903	Intron of PIK3R1(+):10bp before exon 14	IGR: 4Kb before PAIP2(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1746-11:PIK3R1_chr5:g.138673903inv	PRECISE		MANUAL_OK	5to5	-	71082666	NA	0	19	10	21
P-0055714-T01-IM6	SOMATIC	RB1	RB1	13	13	49026204	49034050	Intron of RB1(+):924bp before exon 18	Intron of RB1(+):81bp after exon 20	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1696-925_c.2106+81dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	7846	NA	0	35	10	37
P-0055716-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	35760606	36259283	3-UTR of SMIM11(+):9Kb after coding stop	Exon 4 of RUNX1(-)	GRCh37	DUPLICATION	RUNX1 (NM_001754) rearrangement: c.208:RUNX1_chr21:g.35760606dup	PRECISE		MANUAL_OK	5to3	-	498677	NA	0	43	10	45
P-0040913-T03-IM6	SOMATIC	BCOR	BCOR	X	5	39932187	44741094	Exon 4 of BCOR(-)	IGR: 3Kb before LOC100506674(-)	GRCh37	TRANSLOCATION	BCOR (NM_001123385) rearrangement: t(5;X)(p12;p11.4)(chr5:g.44741094::chrX:g.39932187)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	78	10	77
P-0048103-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872429	42873703	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449): c.56-3587:TMPRSS2_c.40-54885:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3001274	NA	0	48	10	51
P-0055659-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16203022	16206451	Exon 3 of SPEN(+)	Intron of SPEN(+):3Kb after exon 3	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.730_c.881+3278del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3429	NA	0	3	7	3
P-0055665-T01-IM6	SOMATIC	KIF26B	KMT2A	11	1	118344735	245596827	Exon 3 of KMT2A(+)	Intron of KIF26B(+):14Kb after exon 4	GRCh37	TRANSLOCATION	KIF26B (NM_018012) - KMT2A (NM_001197104) rearrangement: t(1;11)(q44;q23.3)(chr1:g.245596827::chr11:g.118344735)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIF26B:KMT2A}	0	NA	0	6	10	7
P-0055679-T01-IM6	SOMATIC	DNMT3A	DTNB	2	2	25458664	25784692	Exon 22 of DNMT3A(-)	Intron of DTNB(-):15Kb after exon 8	GRCh37	DUPLICATION	DNMT3A (NM_022552) - DTNB (NM_021907) rearrangement: c.2509:DNMT3A_c.876+15015:DTNBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3A:DTNB}	326028	NA	0	32	10	32
P-0055682-T01-IM6	SOMATIC	ALDH2	IFNGR1	12	6	112238291	137539706	Intron of ALDH2(+):424bp after exon 11	Intron of IFNGR1(-):673bp after exon 1	GRCh37	TRANSLOCATION	ALDH2 (NM_000690) - IFNGR1 (NM_000416) rearrangement: t(6;12)(q23.3;q24.12)(chr6:g.137539706::chr12:g.112238291)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ALDH2:IFNGR1}	0	NA	0	5	9	5
P-0055684-T01-IM6	SOMATIC	POLE	POLE	12	12	133245279	133246831	Exon 18 of POLE(-)	Intron of POLE(-):1Kb before exon 17	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.1795-1306_c.1968del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1552	NA	0	56	10	68
P-0055684-T01-IM6	SOMATIC	MAX	MAX	14	4	65568205	158745016	Intron of MAX(-):58bp after exon 2	IGR: 251Kb before LOC340017(+)	GRCh37	TRANSLOCATION	MAX (NM_002382) rearrangement: t(4;14)(q32.1;q23.3)(chr4:g.158745016::chr14:g.65568205)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	18
P-0055684-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39857163	42869269	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):776bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+777:TMPRSS2_c.18+13124:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3012106	NA	0	131	10	135
P-0055566-T02-IM6	SOMATIC	KDM6A	KDM6A	X	3	44913153	147929903	Exon 10 of KDM6A(+)	IGR: 486Kb before AGTR1(+)	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(3;X)(q24;p11.3)(chr3:g.147929903::chrX:g.44913153)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0017290-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39907178	39922078	IGR: 3Kb before BCOR(-)	Exon 9 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.4094_c.*4184del	PRECISE		MANUAL_OK	3to5	-	14900	NA	0	116	10	124
P-0025404-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39916674	39997573	Intron of BCOR(-):100bp before exon 11	5-UTR of BCOR(-):86Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.-41+38687_c.4429-100del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	80899	NA	0	10	10	10
P-0034158-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117703869	117708151	Intron of ROS1(-):610bp after exon 16	Exon 14 of ROS1(-)	GRCh37	DUPLICATION	ROS1 (NM_002944) rearrangement: c.2026_c.2496+611dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4282	NA	0	63	10	67
P-0054139-T02-IM6	SOMATIC	FGFR1	FGFR1	8	8	38274827	38331658	Exon 13 of FGFR1(-)	IGR: 37Kb before C8orf86(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.1753:FGFR1_chr8:g.38331658inv	PRECISE		MANUAL_OK	5to5	-	56831	NA	1	202	10	242
P-0054430-T02-IM6	SOMATIC	TRIM24	BRAF	7	7	138265953	140487875	Intron of TRIM24(+):488bp before exon 17	Intron of BRAF(-):491bp before exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.2719-489:TRIM24_c.1141-491:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2221922	NA	0	42	10	42
P-0033921-T04-IM6	SOMATIC	ETV6	NTRK3	15	12	88516534	12031161	Intron of NTRK3(-):33Kb before exon 15	Intron of ETV6(+):6Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12031161::chr15:g.88516534)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	104	10	100
P-0039600-T03-IM6	SOMATIC	ARID1B	ARID1B	6	3	157521882	83610636	Exon 18 of ARID1B(+)	IGR: 1Mb before LINC00971(-)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(3;6)(p12.1;q25.3)(chr3:g.83610636::chr6:g.157521882)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	116	10	117
P-0039600-T03-IM6	SOMATIC	WHSC1L1	ADAM18	8	8	38133844	39489803	Exon 23 of WHSC1L1(-)	Intron of ADAM18(+):3Kb after exon 7	GRCh37	INVERSION	WHSC1L1 (NM_023034) - ADAM18 (NM_014237) rearrangement: c.4042:WHSC1L1_c.588+2845:ADAM18inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WHSC1L1:ADAM18}	1355959	NA	0	247	10	291
P-0041976-T02-IM6	SOMATIC	RAD21	RAD21	8	8	99746563	117875463	Intron of STK3(-):15Kb after exon 4	Exon 3 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.180:RAD21_chr8:g.99746563inv	PRECISE		MANUAL_OK	3to3	-	18128900	NA	0	27	10	26
P-0041976-T02-IM6	SOMATIC	RAD21	RAD21	8	8	117874081	129438804	Exon 4 of RAD21(-)	3-UTR of LINC00824(-):138Kb after coding stop	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.373:RAD21_chr8:g.129438804inv	PRECISE		MANUAL_OK	5to5	-	11564723	NA	0	35	10	37
P-0049830-T04-IM6	SOMATIC	NBN	NBN	8	8	90952914	90990489	Intron of NBN(-):3Kb after exon 14	Exon 5 of NBN(-)	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.543_c.2184+2567del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	37575	NA	0	3	4	3
P-0055753-T01-IM6	SOMATIC	MLH1	MLH1	3	3	36988297	37053263	Promoter of TRANK1(-):120Kb from tx start	Intron of MLH1(+):47bp before exon 7	GRCh37	INVERSION	MLH1 (NM_000249) rearrangement: c.546-48:MLH1_chr3:g.36988297inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TRANK1:MLH1}	64966	NA	0	5	10	6
P-0055778-T01-IM6	SOMATIC	MET	MET	7	7	98693299	116412477	Intron of SMURF1(-):34Kb before exon 2	Intron of MET(+):434bp after exon 14	GRCh37	DELETION	MET (NM_000245) rearrangement: c.3028+434:MET_chr7:g.98693299del	PRECISE		MANUAL_OK	3to5	-	17719178	NA	0	260	10	282
P-0055752-T01-IM6	SOMATIC	NCOR1	RSPRY1	17	16	15942849	57269014	Exon 44 of NCOR1(-)	Intron of RSPRY1(+):21bp before exon 14	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - RSPRY1 (NM_133368) rearrangement: t(16;17)(q13;p12)(chr16:g.57269014::chr17:g.15942849)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NCOR1:RSPRY1}	0	NA	0	11	10	12
P-0019278-T03-IM6	SOMATIC	FGF3	FGF3	11	11	69616380	69625266	IGR: 8Kb before FGF3(-)	Exon 3 of FGF3(-)	GRCh37	DELETION	FGF3 (NM_005247) rearrangement: c.527:FGF3_chr11:g.69616380del	PRECISE		MANUAL_OK	3to5	-	8886	NA	0	4	7	4
P-0020426-T04-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11130639	11134269	Intron of SMARCA4(+):262bp after exon 18	Exon 20 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2616+262_c.2935del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3630	NA	0	61	10	61
P-0047747-T02-IM6	SOMATIC	ETV6	ETV6	12	6	12017097	16026794	Intron of ETV6(+):5Kb before exon 5	IGR: 103Kb before MYLIP(+)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(6;12)(p22.3;p13.2)(chr6:g.16026794::chr12:g.12017097)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	105	10	108
P-0047747-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3781150	3889316	Intron of CREBBP(-):42bp after exon 30	Intron of CREBBP(-):11Kb after exon 2	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.798+10982_c.5172+43dup	PRECISE		MANUAL_OK	5to3	Duplication of 28 exons : in frame	108166	NA	1	176	10	177
P-0055567-T01-IM6	SOMATIC	WHSC1L1	STAR	8	8	38005752	38139170	Exon 3 of STAR(-)	Intron of WHSC1L1(-):69bp before exon 20	GRCh37	DELETION	WHSC1L1 (NM_023034) - STAR (NM_000349) rearrangement: c.3502-69:WHSC1L1_c.272:STARdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {WHSC1L1:STAR}	133418	NA	0	3	5	3
P-0055844-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	70138924	72821326	IGR: 9Kb before PDPR(+)	Exon 10 of ZFHX3(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.10849:ZFHX3_chr16:g.70138924inv	PRECISE		MANUAL_OK	3to3	-	2682402	NA	0	13	10	15
P-0055844-T01-IM6	SOMATIC	PREX2	PREX2	17	8	20208441	68985028	Intron of SPECC1(+):894bp before exon 14	Intron of PREX2(+):223bp after exon 14	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(8;17)(q13.2;p11.2)(chr8:g.68985028::chr17:g.20208441)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	6	6	6
P-0055844-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113969494	113978196	IGR: 4Kb before PAX8(-)	Intron of PAX8(-):441bp before exon 11	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.1190-441:PAX8_chr2:g.113969494inv	PRECISE		MANUAL_OK	5to5	-	8702	NA	0	14	10	16
P-0045156-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	27021996	27023636	Promoter of ARID1A(+):525bp from tx start	Exon 1 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.742:ARID1A_chr1:g.27021996del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1640	NA	0	76	10	377
P-0052299-T04-IM6	SOMATIC	SND1	BRAF	7	7	127350630	140482935	Intron of SND1(+):3Kb after exon 9	Exon 10 of BRAF(-)	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1038+2929:SND1_c.1200:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SND1:BRAF}	13132305	NA	0	82	10	83
P-0053966-T03-IM6	SOMATIC	ALK	ALK	2	2	15238444	29447806	IGR: 69Kb before NBAS(-)	Intron of ALK(-):520bp after exon 19	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3172+521:ALK_chr2:g.15238444inv	IMPPRECISE		MANUAL_OK	5to5	-	14209362	NA	0	45	0	114
P-0055500-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21967327	22006232	5-UTR of CDKN2A-AS1(+):426bp before coding start	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.171:CDKN2B_chr9:g.21967327del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	38905	NA	0	67	10	70
P-0055816-T01-IM6	SOMATIC	MLLT1	PPP2R1A	19	19	6260034	52725341	Intron of MLLT1(-):2Kb after exon 3	Intron of PPP2R1A(+):10bp before exon 13	GRCh37	INVERSION	MLLT1 (NM_005934) - PPP2R1A (NM_014225) rearrangement: c.276+2205:MLLT1_c.1519-11:PPP2R1Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {MLLT1:PPP2R1A}	46465307	NA	0	16	10	25
P-0055865-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488325	57493514	Intron of NAB2(+):69bp before exon 7	Intron of STAT6(-):35bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-70:NAB2_c.1744+36:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5189	NA	0	150	10	150
P-0055874-T01-IM6	SOMATIC	ELL	KEAP1	19	19	10599870	18632060	Exon 5 of KEAP1(-)	Intron of ELL(-):670bp after exon 1	GRCh37	DELETION	ELL (NM_006532) - KEAP1 (NM_203500) rearrangement: c.135+671:ELL_c.1706:KEAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ELL:KEAP1}	8032190	NA	0	22	10	23
P-0055874-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15295928	21794992	Intron of NOTCH3(-):98bp before exon 15	IGR: 107Kb before ZNF429(+)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2297-98:NOTCH3_chr19:g.21794992del	PRECISE		MANUAL_OK	3to5	-	6499064	NA	0	36	10	38
P-0055884-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1740501	1808886	Intron of TACC3(+):927bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2318:FGFR3_c.1942-928:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68385	NA	0	11	10	11
P-0055947-T01-IM6	SOMATIC	FANCA	FANCA	16	2	89809224	27076318	Exon 37 of FANCA(-)	5-UTR of DPYSL5(+):45Kb before coding start	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(2;16)(p23.3;q24.3)(chr2:g.27076318::chr16:g.89809224)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	50	10	50
P-0055947-T01-IM6	SOMATIC	ERCC4	DAGLB	16	7	14016087	6486129	Intron of ERCC4(+):19bp after exon 2	Intron of DAGLB(-):394bp before exon 2	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) - DAGLB (NM_139179) rearrangement: t(7;16)(p22.1;p13.12)(chr7:g.6486129::chr16:g.14016087)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ERCC4:DAGLB}	0	NA	0	17	10	23
P-0055950-T01-IM6	SOMATIC	MET	MET	7	7	116414596	116418646	Intron of MET(+):338bp before exon 15	Intron of MET(+):183bp before exon 17	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.3029-339_c.3341-184dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	4050	NA	0	226	10	239
P-0055952-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156841915	156851445	Intron of NTRK1(+):368bp after exon 7	3-UTR of NTRK1(+):21Kb after coding stop	GRCh37	DUPLICATION	NTRK1 (NM_002529) rearrangement: c.850+368:NTRK1_chr1:g.156851445dup	PRECISE		MANUAL_OK	5to3	-	9530	NA	0	25	10	26
P-0055952-T01-IM6	SOMATIC	RFWD2	NTRK1	1	1	156851106	175937617	Intron of NTRK1(+):142bp before exon 17	Intron of RFWD2(-):18Kb after exon 18	GRCh37	INVERSION	RFWD2 (NM_022457) - NTRK1 (NM_002529) rearrangement: c.2133+18462:RFWD2_c.2206-143:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RFWD2:NTRK1}	19086511	NA	0	5	9	5
P-0011515-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42859817	42871071	Intron of TMPRSS2(-):503bp after exon 5	Intron of TMPRSS2(-):955bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-955_c.556+504inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11254	NA	0	51	10	75
P-0011515-T02-IM6	SOMATIC	FGFR1	PARP8	8	5	38285268	50080979	Intron of FGFR1(-):170bp after exon 6	Intron of PARP8(+):3Kb before exon 11	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) - PARP8 (NM_024615) rearrangement: t(5;8)(q11.1;p11.23)(chr5:g.50080979::chr8:g.38285268)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FGFR1:PARP8}	0	NA	0	46	10	47
P-0027041-T02-IM6	SOMATIC	SMARCD1	SMARCD1	12	2	50483942	191478633	Intron of SMARCD1(+):81bp before exon 8	IGR: 35Kb before NAB1(+)	GRCh37	TRANSLOCATION	SMARCD1 (NM_003076) rearrangement: t(2;12)(q32.2;q13.12)(chr2:g.191478633::chr12:g.50483942)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	57	10	57
P-0041905-T02-IM6	SOMATIC	CSF1R	CSF1R	5	5	149460764	150841228	Intron of CSF1R(-):177bp before exon 3	Intron of SLC36A1(+):2Kb before exon 3	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.50-177:CSF1R_chr5:g.150841228del	PRECISE		MANUAL_OK	3to5	-	1380464	NA	0	40	10	41
P-0046463-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871198	42874938	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4822:TMPRSS2_c.40-53654:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3003740	NA	0	7	10	8
P-0046758-T03-IM6	SOMATIC	FGFR3	FGFR3	15	4	40834741	1807488	Intron of C15orf57(-):10Kb before exon 4	Exon 13 of FGFR3(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;15)(p16.3;q15.1)(chr4:g.1807488::chr15:g.40834741)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	22	10	22
P-0046758-T03-IM6	SOMATIC	WHSC1	WHSC1	4	4	1924897	1940254	Intron of WHSC1(+):5Kb after exon 5	Exon 8 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1410+4547_c.1751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15357	NA	0	17	10	17
P-0048773-T04-IM6	SOMATIC	CREBBP	CREBBP	16	16	3807472	3872301	Intron of CREBBP(-):95bp before exon 19	Intron of CREBBP(-):12Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.799-11521_c.3610-95inv	PRECISE		MANUAL_OK	3to3	-	64829	NA	0	85	10	85
P-0051231-T03-IM6	SOMATIC	EML4	ALK	2	2	29446774	42496001	Intron of ALK(-):380bp before exon 20	Intron of EML4(+):4Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4130:EML4_c.3173-380:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13049227	NA	0	18	10	18
P-0055645-T02-IM6	SOMATIC	PAX8	PAX8	5	2	106579946	113985509	IGR: 133Kb before EFNA5(-)	Intron of PAX8(-):676bp before exon 10	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;5)(q13;q21.3)(chr2:g.113985509::chr5:g.106579946)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	67	10	68
P-0055645-T02-IM6	SOMATIC	TEK	TEK	9	9	406519	27208990	Intron of DOCK8(+):410bp before exon 28	Intron of TEK(+):128bp before exon 16	GRCh37	INVERSION	TEK (NM_000459) rearrangement: c.2576-129:TEK_chr9:g.406519inv	PRECISE		MANUAL_OK	5to5	-	26802471	NA	0	49	10	49
P-0055837-T01-IM6	SOMATIC	H3F3B	H3F3B	17	12	73774903	77945081	Exon 3 of H3F3B(-)	IGR: 280Kb before NAV3(+)	GRCh37	TRANSLOCATION	H3F3B (NM_005324) rearrangement: t(12;17)(q21.2;q25.1)(chr12:g.77945081::chr17:g.73774903)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	67	10	86
P-0055900-T01-IM6	SOMATIC	MGA	MGA	15	15	42054020	69625060	Exon 21 of MGA(+)	5-UTR of PAQR5(+):27Kb before coding start	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.7482:MGA_chr15:g.69625060inv	PRECISE		MANUAL_OK	5to5	-	27571040	NA	0	5	10	8
P-0055936-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38188990	39972903	Exon 5 of WHSC1L1(-)	IGR: 38Kb before C8orf4(+)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.1024:WHSC1L1_chr8:g.39972903inv	PRECISE		MANUAL_OK	5to5	-	1783913	NA	0	736	10	1090
P-0040730-T02-IM6	SOMATIC	KMT2A	MTMR2	11	11	95648568	118362170	Intron of MTMR2(-):8Kb after exon 1	Intron of KMT2A(+):137bp after exon 14	GRCh37	INVERSION	KMT2A (NM_001197104) - MTMR2 (NM_016156) rearrangement: c.4819+137:KMT2A_c.80+8471:MTMR2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {KMT2A:MTMR2}	22713602	NA	0	15	10	15
P-0040730-T02-IM6	SOMATIC	SDHD	SDHD	21	11	34852395	111957758	Promoter of TMEM50B(-):31Kb from tx start	Intron of SDHD(+):75bp after exon 1	GRCh37	TRANSLOCATION	SDHD (NM_003002) rearrangement: t(11;21)(q23.1;q22.11)(chr11:g.111957758::chr21:g.34852395)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	13	10	13
P-0048335-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29687603	32416936	Intron of EWSR1(+):15bp after exon 10	Intron of WT1(-):866bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416936::chr22:g.29687603)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	95	0	94
P-0055562-T02-IM6	SOMATIC	EP300	EP300	22	22	41543572	41545161	Intron of EP300(+):268bp before exon 12	Exon 13 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.2132-269_c.2361del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1589	NA	0	12	10	17
P-0055856-T01-IM6	SOMATIC	EP300	EP300	22	14	41522120	21429339	Intron of EP300(+):76bp after exon 3	IGR: 6Kb before RNASE2(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(14;22)(q11.2;q13.2)(chr14:g.21429339::chr22:g.41522120)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	27
P-0055861-T02-IM6	SOMATIC	ELF3	ELF3	1	1	201978995	201982796	Promoter of ELF3(+):694bp from tx start	Intron of ELF3(+):160bp before exon 8	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.806-161:ELF3_chr1:g.201978995del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3801	NA	0	65	10	65
P-0055906-T01-IM6	SOMATIC	MDC1	MDC1	6	3	30681017	145289336	Exon 5 of MDC1(-)	IGR: 498Kb before PLOD2(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(3;6)(q24;p21.33)(chr3:g.145289336::chr6:g.30681017)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	45	10	49
P-0055909-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57485966	57500656	Intron of NAB2(+):185bp after exon 2	Intron of STAT6(-):42bp before exon 5	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.957+185:NAB2_c.340-42:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	14690	NA	0	66	10	66
P-0055814-T01-IM6	SOMATIC	CUL3	CUL3	2	2	225338963	225349805	Exon 16 of CUL3(-)	Intron of CUL3(-):3Kb before exon 14	GRCh37	INVERSION	CUL3 (NM_003590) rearrangement: c.1843-3010_c.2306inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10842	NA	0	7	6	7
P-0055814-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55215372	55224547	Intron of EGFR(+):939bp after exon 4	Intron of EGFR(+):22bp after exon 10	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.559+939_c.1207+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	9175	NA	0	5	10	5
P-0001652-T02-IM6	SOMATIC	EWSR1	CREB3L1	22	11	29686428	46332623	Intron of EWSR1(+):1Kb before exon 10	Exon 5 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46332623::chr22:g.29686428)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	NA	0	156	10	161
P-0053170-T02-IM6	SOMATIC	PLCG2	LIMK2	22	16	31625396	81946475	Intron of LIMK2(+):4Kb after exon 2	Intron of PLCG2(+):154bp after exon 19	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) - LIMK2 (NM_005569) rearrangement: t(16;22)(q23.3;q12.2)(chr16:g.81946475::chr22:g.31625396)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PLCG2:LIMK2}	0	NA	0	6	10	6
P-0055657-T01-IM6	SOMATIC	NF1	NF1	17	17	29665005	29697535	Intron of NF1(+):37bp before exon 45	Intron of NF1(+):3Kb before exon 58	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.6705-38_c.8378-3496dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : out of frame	32530	NA	0	43	10	44
P-0055657-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	33433826	68290179	Intron of RAD51D(-):326bp before exon 3	IGR: 125Kb before KCNJ2(+)	GRCh37	INVERSION	RAD51D (NM_133629) rearrangement: c.145-326:RAD51D_chr17:g.68290179inv	IMPPRECISE		MANUAL_OK	5to5	-	34856353	NA	0	7	0	9
P-0055657-T01-IM6	SOMATIC	ZFHX3	ZFHX3	X	16	101310401	72831698	IGR: 70Kb before TCEAL2(+)	Exon 9 of ZFHX3(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(16;X)(q22.2;q22.1)(chr16:g.72831698::chrX:g.101310401)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	26	10	26
P-0055667-T02-IM6	SOMATIC	PICALM	ALK	11	2	85681391	29446386	Intron of PICALM(-):4Kb after exon 19	Exon 20 of ALK(-)	GRCh37	TRANSLOCATION	PICALM (NM_007166) - ALK (NM_004304) rearrangement: t(2;11)(p23.2;q14.2)(chr2:g.29446386::chr11:g.85681391)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PICALM:ALK}	0	NA	0	169	10	191
P-0055806-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176119514	176176006	Intron of RFWD2(-):1Kb before exon 6	Exon 1 of RFWD2(-)	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.109_c.763-1304del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	56492	NA	0	5	10	5
P-0055927-T02-IM6	SOMATIC	REL	REL	2	2	61144087	61913680	Exon 5 of REL(+)	IGR: 138Kb before FAM161A(-)	GRCh37	DELETION	REL (NM_002908) rearrangement: c.470:REL_chr2:g.61913680del	PRECISE		MANUAL_OK	3to5	-	769593	NA	0	23	10	23
P-0055975-T01-IM6	SOMATIC	FGFR2	STAT4	10	2	123240312	191936121	Intron of FGFR2(-):777bp before exon 18	Intron of STAT4(-):2Kb before exon 6	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - STAT4 (NM_001243835) rearrangement: t(2;10)(q32.3;q26.13)(chr2:g.191936121::chr10:g.123240312)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:STAT4}	0	NA	0	116	10	116
P-0055996-T01-IM6	SOMATIC	RAB35	RAB35	12	6	120536688	55882945	Exon 5 of RAB35(-)	IGR: 38Kb before COL21A1(-)	GRCh37	TRANSLOCATION	RAB35 (NM_006861) rearrangement: t(6;12)(p12.1;q24.23)(chr6:g.55882945::chr12:g.120536688)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	10	0	10
P-0055999-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151878613	151887651	Exon 36 of KMT2C(-)	Intron of KMT2C(-):3Kb before exon 32	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.4661-2719_c.6332dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9038	NA	0	8	10	8
P-0056006-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	11	11151867	36035700	Intron of SMARCA4(+):115bp before exon 30	Intron of LDLRAD3(+):22Kb before exon 2	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(11;19)(p13;p13.2)(chr11:g.36035700::chr19:g.11151867)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	42	10	44
P-0056006-T01-IM6	SOMATIC	MST1R	APEH	3	3	49716037	49928807	Intron of APEH(+):247bp before exon 12	Intron of MST1R(-):24bp after exon 16	GRCh37	INVERSION	MST1R (NM_002447) - APEH (NM_001640) rearrangement: c.3534+25:MST1R_c.1061-248:APEHinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MST1R:APEH}	212770	NA	0	222	10	245
P-0056013-T01-IM6	SOMATIC	RARA	RARA	17	17	38487688	49044082	Intron of RARA(+):40bp after exon 2	Intron of SPAG9(-):334bp before exon 29	GRCh37	DELETION	RARA (NM_000964) rearrangement: c.178+40:RARA_chr17:g.49044082del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10556394	NA	0	375	10	1628
P-0056016-T01-IM6	SOMATIC	MALT1	MALT1	18	18	56409210	56721813	Exon 14 of MALT1(+)	Promoter of OACYLP(+):19Kb from tx start	GRCh37	DUPLICATION	MALT1 (NM_006785) rearrangement: c.1717:MALT1_chr18:g.56721813dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {OACYLP:MALT1}	312603	NA	0	5	5	5
P-0027661-T02-IM6	SOMATIC	MICU1	TRAF2	10	9	74251821	139820055	Intron of MICU1(-):15Kb before exon 7	Intron of TRAF2(+):79bp before exon 11	GRCh37	TRANSLOCATION	MICU1 (NM_006077) - TRAF2 (NM_021138) rearrangement: t(9;10)(q34.3;q22.1)(chr9:g.139820055::chr10:g.74251821)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MICU1:TRAF2}	0	NA	0	17	10	17
P-0027661-T02-IM6	SOMATIC	RNF43	RNF43	17	17	56437414	56441495	Intron of RNF43(-):95bp after exon 8	Intron of RNF43(-):534bp before exon 4	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.376-534_c.952+96dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	4081	NA	0	144	10	148
P-0027661-T02-IM6	SOMATIC	CDK12	CDK12	X	17	5859460	37686273	Intron of NLGN4X(-):32Kb before exon 4	Intron of CDK12(+):583bp before exon 14	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(17;X)(q12;p22.32)(chr17:g.37686273::chrX:g.5859460)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	9	7
P-0031960-T01-IM6	SOMATIC	FGFR2	FGFR2	10	7	123255980	47633640	Intron of FGFR2(-):65bp after exon 13	IGR: 28Kb before LINC01447(+)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(7;10)(p12.3;q26.13)(chr7:g.47633640::chr10:g.123255980)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	12
P-0031960-T01-IM6	SOMATIC	INPP4B	INPP4B	4	1	143044577	214111618	Intron of INPP4B(-):9bp before exon 20	IGR: 14Kb before LINC00538(+)	GRCh37	TRANSLOCATION	INPP4B (NM_001101669) rearrangement: t(1;4)(q32.3;q31.21)(chr1:g.214111618::chr4:g.143044577)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	20
P-0033507-T02-IM6	SOMATIC	FGFR3	FGFR3	4	4	1801549	1853094	Intron of FGFR3(+):10bp after exon 4	Intron of LETM1(-):2Kb before exon 2	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.445+10:FGFR3_chr4:g.1853094del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	51545	NA	0	64	10	68
P-0036911-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	72440776	118366986	5-UTR of ARAP1(-):44Kb before coding start	Exon 20 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.5568:KMT2A_chr11:g.72440776inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ARAP1:KMT2A}	45926210	NA	0	54	10	67
P-0036911-T02-IM6	SOMATIC	BRCA1	POLN	17	4	41247704	2226690	Intron of BRCA1(-):158bp after exon 9	Intron of POLN(-):4Kb after exon 1	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) - POLN (NM_181808) rearrangement: t(4;17)(p16.3;q21.31)(chr4:g.2226690::chr17:g.41247704)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BRCA1:POLN}	0	NA	0	5	10	5
P-0047003-T02-IM6	SOMATIC	ZNF812	DNMT1	19	19	9806424	10274117	Intron of ZNF812(-):345bp after exon 3	Intron of DNMT1(-):81bp before exon 11	GRCh37	DUPLICATION	ZNF812 (NM_001199814) - DNMT1 (NM_001379) rearrangement: c.25+346:ZNF812_c.844-81:DNMT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ZNF812:DNMT1}	467693	NA	0	11	10	11
P-0049138-T02-IM6	SOMATIC	TMBIM4	KMT2C	12	7	66536216	151845234	Intron of TMBIM4(-):3Kb after exon 5	Exon 52 of KMT2C(-)	GRCh37	TRANSLOCATION	TMBIM4 (NM_016056) - KMT2C (NM_170606) rearrangement: t(7;12)(q36.1;q14.3)(chr7:g.151845234::chr12:g.66536216)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMBIM4:KMT2C}	0	NA	0	7	10	7
P-0049427-T03-IM6	SOMATIC	ALS2CR12	CASP8	2	2	202137282	202179429	Intron of CASP8(+):78bp before exon 4	Intron of ALS2CR12(-):5Kb before exon 10	GRCh37	INVERSION	ALS2CR12 (NM_001127391) - CASP8 (NM_001080125) rearrangement: c.676-5456:ALS2CR12_c.589-79:CASP8inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ALS2CR12:CASP8}	42147	NA	0	24	10	51
P-0049427-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39882929	42873689	Intron of ERG(-):65Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3573:TMPRSS2_c.39+64657:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2990760	NA	0	84	10	85
P-0055798-T02-IM6	SOMATIC	MGA	MGA	15	14	41961920	100857180	Exon 2 of MGA(+)	Intron of WDR25(+):9Kb after exon 2	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(14;15)(q32.2;q15.1)(chr14:g.100857180::chr15:g.41961920)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	16	10	16
P-0056019-T01-IM6	SOMATIC	MUC22	MDC1	6	6	30674000	30982010	Intron of MDC1(-):125bp before exon 10	Intron of MUC22(+):3Kb after exon 2	GRCh37	INVERSION	MUC22 (NM_001198815) - MDC1 (NM_014641) rearrangement: c.70+3457:MUC22_c.3085-125:MDC1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MUC22:MDC1}	308010	NA	0	9	7	4
P-0056080-T01-IM6	SOMATIC	SH2B3	SH2B3	12	12	74607087	111884636	3-UTR of LOC100507377(-):79Kb after coding stop	Exon 3 of SH2B3(+)	GRCh37	DELETION	SH2B3 (NM_005475) rearrangement: c.812:SH2B3_chr12:g.74607087del	PRECISE		MANUAL_OK	3to5	-	37277549	NA	0	10	10	10
P-0056080-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29686526	40444541	Intron of EWSR1(+):1Kb before exon 10	5-UTR of TNRC6B(+):77Kb before coding start	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.993-1028:EWSR1_chr22:g.40444541inv	PRECISE		MANUAL_OK	5to5	-	10758015	NA	0	47	10	48
P-0056082-T01-IM6	SOMATIC	CDKN2C	CDKN2C	1	1	51398881	51441309	Intron of FAF1(-):27Kb after exon 1	Promoter of CDKN2C(+):6Kb from tx start	GRCh37	DELETION	CDKN2C (NM_078626) rearrangement: c.*1367:CDKN2C_chr1:g.51398881del	PRECISE		MANUAL_OK	3to5	-	42428	NA	0	27	10	36
P-0056086-T01-IM6	SOMATIC	NUP107	MDM2	12	12	69127060	69230503	Intron of NUP107(+):171bp before exon 24	Exon 10 of MDM2(+)	GRCh37	DELETION	NUP107 (NM_020401) - MDM2 (NM_002392) rearrangement: c.2102-172:NUP107_c.892:MDM2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NUP107:MDM2}	103443	NA	0	6	0	6
P-0056214-T01-IM6	SOMATIC	NF1	NF1	17	8	29556271	67618115	Exon 21 of NF1(+)	5-UTR of C8orf44-SGK3(+):88Kb before coding start	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(8;17)(q13.1;q11.2)(chr8:g.67618115::chr17:g.29556271)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C8orf44-SGK3:NF1}	0	NA	0	14	10	21
P-0056214-T01-IM6	SOMATIC	RECQL4	RECQL4	17	8	32115106	145738388	Intron of ASIC2(-):368Kb after exon 1	Exon 16 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(8;17)(q24.3;q12)(chr8:g.145738388::chr17:g.32115106)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	21	10	24
P-0056214-T01-IM6	SOMATIC	NBN	NBN	8	8	71955243	90976669	IGR: 154Kb before EYA1(-)	Exon 8 of NBN(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.963:NBN_chr8:g.71955243inv	PRECISE		MANUAL_OK	3to3	-	19021426	NA	0	5	10	5
P-0056218-T01-IM6	SOMATIC	RB1	RB1	13	1	48942714	109385820	Exon 11 of RB1(+)	Exon 6 of AKNAD1(-)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(1;13)(p13.3;q14.2)(chr1:g.109385820::chr13:g.48942714)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	31	10	31
P-0056218-T01-IM6	SOMATIC	STAT5A	STAT5A	17	17	17662756	40452223	5-UTR of RAI1(+):34Kb before coding start	Exon 8 of STAT5A(+)	GRCh37	INVERSION	STAT5A (NM_003152) rearrangement: c.757:STAT5A_chr17:g.17662756inv	PRECISE		MANUAL_OK	5to5	-	22789467	NA	0	4	10	4
P-0056224-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	170015184	170017796	Intron of PRKCI(+):3bp after exon 16	Intron of PRKCI(+):898bp after exon 17	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.1587+3_c.1703+898del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2612	NA	0	6	0	6
P-0056226-T01-IM6	SOMATIC	SCFD2	PDGFRA	4	4	53952812	55139804	Intron of SCFD2(-):59Kb after exon 5	Exon 10 of PDGFRA(+)	GRCh37	INVERSION	SCFD2 (NM_152540) - PDGFRA (NM_006206) rearrangement: c.1561+58688:SCFD2_c.1465:PDGFRAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SCFD2:PDGFRA}	1186992	NA	0	19	10	61
P-0056227-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27023710	27091031	Exon 1 of ARID1A(+)	Intron of ARID1A(+):1Kb after exon 8	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.816_c.2732+1255dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	67321	NA	0	3	6	3
P-0056237-T01-IM6	SOMATIC	MEN1	MEN1	11	11	64557531	64571859	Intron of MAP4K2(-):100bp before exon 30	Exon 10 of MEN1(-)	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.1795:MEN1_chr11:g.64557531inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	14328	NA	0	33	10	38
P-0056237-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11132383	11133622	Intron of SMARCA4(+):17bp before exon 19	Intron of SMARCA4(+):571bp before exon 20	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2617-18_c.2860-572del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1239	NA	0	5	0	5
P-0056240-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27095929	27099219	Intron of ARID1A(+):1Kb after exon 11	Intron of ARID1A(+):83bp before exon 14	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.3198+1439_c.3540-84dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	3290	NA	0	12	10	12
P-0040350-T03-IM6	SOMATIC	TRAF7	TRAF7	16	16	2225227	4374860	Intron of TRAF7(+):74bp before exon 16	3-UTR of GLIS2-AS1(-):3Kb after coding stop	GRCh37	DELETION	TRAF7 (NM_032271) rearrangement: c.1387-75:TRAF7_chr16:g.4374860del	PRECISE		MANUAL_OK	3to5	-	2149633	NA	0	30	10	30
P-0040350-T03-IM6	SOMATIC	ERCC4	RBFOX1	16	16	7664185	14026210	Intron of RBFOX1(+):7Kb after exon 8	Intron of ERCC4(+):68bp after exon 6	GRCh37	DUPLICATION	ERCC4 (NM_005236) - RBFOX1 (NM_145891) rearrangement: c.1102+68:ERCC4_c.736+6845:RBFOX1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERCC4:RBFOX1}	6362025	NA	0	5	0	5
P-0054426-T02-IM6	SOMATIC	ELF3	ELF3	1	1	201981554	202089191	Exon 4 of ELF3(+)	Promoter of GPR37L1(+):3Kb from tx start	GRCh37	DUPLICATION	ELF3 (NM_004433) rearrangement: c.468:ELF3_chr1:g.202089191dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GPR37L1:ELF3}	107637	NA	0	45	10	45
P-0055587-T02-IM6	SOMATIC	RBM10	RBM10	X	X	47036743	47039714	Intron of RBM10(+):758bp after exon 7	Intron of RBM10(+):6bp after exon 11	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.858+758_c.1355+6del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	2971	NA	0	26	0	26
P-0056185-T01-IM6	SOMATIC	IKBKE	IKBKE	12	1	98574161	206667151	IGR: 185Kb before MIR4303(-)	Intron of IKBKE(+):101bp before exon 21	GRCh37	TRANSLOCATION	IKBKE (NM_014002) rearrangement: t(1;12)(q32.1;q23.1)(chr1:g.206667151::chr12:g.98574161)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	62	10	62
P-0056185-T01-IM6	SOMATIC	ABCC4	VEGFA	13	6	95869663	43752221	Intron of ABCC4(-):7Kb before exon 5	Intron of VEGFA(+):56bp before exon 8	GRCh37	TRANSLOCATION	ABCC4 (NM_005845) - VEGFA (NM_001171623) rearrangement: t(6;13)(p21.1;q32.1)(chr6:g.43752221::chr13:g.95869663)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ABCC4:VEGFA}	0	NA	0	58	10	66
P-0056185-T01-IM6	SOMATIC	ERCC4	ERCC4	16	11	14042125	67515536	Exon 11 of ERCC4(+)	IGR: 44Kb before FAM86C2P(-)	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) rearrangement: t(11;16)(q13.2;p13.12)(chr11:g.67515536::chr16:g.14042125)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	68
P-0056185-T01-IM6	SOMATIC	TP53	TP53	17	17	7579564	7580741	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.123:TP53_chr17:g.7580741del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1177	NA	0	220	10	245
P-0056189-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117645124	117886398	Intron of ROS1(-):370bp after exon 34	Intron of DCBLD1(+):4Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5641+371:ROS1_chr6:g.117886398del	PRECISE		MANUAL_OK	3to5	-	241274	NA	0	64	10	124
P-0056193-T01-IM6	SOMATIC	SMAD3	MAP2K1	15	15	66682902	67473621	Intron of MAP2K1(+):3Kb after exon 1	Exon 6 of SMAD3(+)	GRCh37	DUPLICATION	SMAD3 (NM_005902) - MAP2K1 (NM_002755) rearrangement: c.701:SMAD3_c.80+3137:MAP2K1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SMAD3:MAP2K1}	790719	NA	0	34	10	34
P-0056193-T01-IM6	SOMATIC	PMS2	PMS2	17	7	36949784	6048605	Intron of PIP4K2B(-):6Kb after exon 1	Intron of PMS2(-):22bp after exon 1	GRCh37	TRANSLOCATION	PMS2 (NM_000535) rearrangement: t(7;17)(p22.1;q12)(chr7:g.6048605::chr17:g.36949784)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	9	9	9
P-0056197-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212284559	212285204	Intron of ERBB4(-):606bp after exon 25	Exon 25 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.3097_c.3135+607del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	645	NA	0	56	10	58
P-0056197-T01-IM6	SOMATIC	NTRK1	NELFCD	20	1	57565762	156843148	Intron of NELFCD(+):202bp before exon 8	Intron of NTRK1(+):276bp before exon 8	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) - NELFCD (NM_198976) rearrangement: t(1;20)(q23.1;q13.32)(chr1:g.156843148::chr20:g.57565762)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NTRK1:NELFCD}	0	NA	0	35	0	36
P-0056199-T01-IM6	SOMATIC	AXL	AXL	20	19	32571995	41763256	IGR: 8Kb before RALY-AS1(-)	Intron of AXL(+):141bp before exon 19	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(19;20)(q13.2;q11.22)(chr19:g.41763256::chr20:g.32571995)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	12
P-0056322-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139400846	139419077	Intron of NOTCH1(-):132bp after exon 24	Intron of NOTCH1(-):646bp before exon 3	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.141-646_c.4014+133dup	PRECISE		MANUAL_OK	5to3	Duplication of 22 exons : out of frame	18231	NA	0	3	6	3
P-0006124-T01-IM5	SOMATIC	FANCA	FANCA	16	16	89847404	89849290	Intron of FANCA(-): 1Kb before exon 18	Exon 17 of FANCA(-)	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.1627-1039_1603del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1886	NA	0	38	50	38
P-0006124-T01-IM5	SOMATIC	None	None	21	21	36164873	36167165	Exon 6 of RUNX1(-)	Intron of RUNX1(-): 2Kb before exon 6	GRCh37	DELETION	None	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	2292	NA	0	27	64	27
P-0013934-T03-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139388760	139402699	Promoter of NOTCH1(-):135bp from tx start	Exon 20 of NOTCH1(-)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.3310:NOTCH1_chr9:g.139388760inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	13939	NA	0	235	10	294
P-0016632-T02-IM6	SOMATIC	SDHAF2	SDHAF2	11	11	61205049	61206466	Intron of SDHAF2(+):47bp before exon 2	Intron of SDHAF2(+):881bp after exon 3	GRCh37	DUPLICATION	SDHAF2 (NM_017841) rearrangement: c.37-48_c.370+881dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1417	NA	0	32	10	36
P-0031647-T02-IM6	SOMATIC	FOXA1	FOXA1	14	14	38060772	38062935	Exon 2 of FOXA1(-)	Intron of FOXA1(-):1Kb before exon 2	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.73-1019_c.1217del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2163	NA	0	62	10	67
P-0032801-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89685138	90636313	Intron of PTEN(+):131bp before exon 3	IGR: 4Kb before STAMBPL1(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.165-132:PTEN_chr10:g.90636313inv	PRECISE		MANUAL_OK	5to5	-	951175	NA	0	6	6	6
P-0032801-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39829912	42870711	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):595bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-595:TMPRSS2_c.19-12368:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040799	NA	0	57	10	59
P-0034768-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193117012	193149426	Exon 8 of CDC73(+)	Intron of CDC73(+):23Kb before exon 11	GRCh37	DUPLICATION	CDC73 (NM_024529) Rearrangement : c.745_c.973-23499dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	32414	NA	0	24	10	25
P-0034768-T01-IM6	SOMATIC	PDCD1	PDCD1	2	2	242792449	242794902	3-UTR of PDCD1(-):760bp after coding stop	Exon 2 of PDCD1(-)	GRCh37	DUPLICATION	PDCD1 (NM_005018) Rearrangement : c.307_c.*761dup	PRECISE		MANUAL_OK	5to3	-	2453	NA	0	73	10	81
P-0034768-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30672263	30677573	Exon 10 of MDC1(-)	Intron of MDC1(-):1Kb before exon 8	GRCh37	DUPLICATION	MDC1 (NM_014641) Rearrangement : c.2222-1439_c.4697dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5310	NA	0	58	10	69
P-0055380-T01-IM6	SOMATIC	RICTOR	SLC25A21	14	5	37620744	38962587	Intron of SLC25A21(-):21Kb after exon 1	Exon 18 of RICTOR(-)	GRCh37	TRANSLOCATION	RICTOR (NM_152756) - SLC25A21 (NM_030631) rearrangement: t(5;14)(p13.1;q13.3)(chr5:g.38962587::chr14:g.37620744)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RICTOR:SLC25A21}	0	NA	0	20	10	21
P-0055380-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853252	42872164	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2048:TMPRSS2_c.18+17035:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3018912	NA	0	21	10	24
P-0056010-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32914897	32986404	Exon 11 of BRCA2(+)	Intron of N4BP2L1(-):4Kb before exon 2	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.6405:BRCA2_chr13:g.32986404del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	71507	NA	0	37	10	39
P-0056095-T01-IM6	SOMATIC	PIK3C2G	GRIN2B	12	12	13958615	18440063	Intron of GRIN2B(-):52Kb before exon 3	Intron of PIK3C2G(+):200bp after exon 3	GRCh37	INVERSION	PIK3C2G (NM_004570) - GRIN2B (NM_000834) rearrangement: c.761+200:PIK3C2G_c.412-51766:GRIN2Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PIK3C2G:GRIN2B}	4481448	NA	0	9	8	9
P-0056095-T01-IM6	SOMATIC	RB1	RB1	X	13	40082011	49034065	IGR: 40Kb before LOC101927476(+)	Intron of RB1(+):96bp after exon 20	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;X)(q14.2;p11.4)(chr13:g.49034065::chrX:g.40082011)	PRECISE		MANUAL_OK	3to3	-	0	NA	1	5	4	6
P-0056099-T01-IM6	SOMATIC	HIST1H2BD	HIST1H2BD	6	6	26158610	26160195	Exon 1 of HIST1H2BD(+)	Promoter of HIST1H2BD(+):2Kb from tx start	GRCh37	DELETION	HIST1H2BD (NM_021063) rearrangement: c.213:HIST1H2BD_chr6:g.26160195del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1585	NA	0	39	10	41
P-0056100-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176047304	176103958	Intron of RFWD2(-):3Kb after exon 11	Intron of RFWD2(-):187bp after exon 8	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.968+188_c.1277+2984del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	56654	NA	0	4	5	4
P-0056103-T01-IM6	SOMATIC	CDK4	LGR5	12	12	58144393	71883350	Intron of CDK4(-):45bp after exon 5	Intron of LGR5(+):15Kb before exon 2	GRCh37	INVERSION	CDK4 (NM_000075) - LGR5 (NM_003667) rearrangement: c.632+46:CDK4_c.213-15044:LGR5inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CDK4:LGR5}	13738957	NA	0	57	10	64
P-0056103-T01-IM6	SOMATIC	DROSHA	DROSHA	12	5	75889403	31514980	Exon 4 of GLIPR1(+)	Intron of DROSHA(-):114bp after exon 7	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;12)(p13.3;q21.2)(chr5:g.31514980::chr12:g.75889403)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	66	10	67
P-0056103-T01-IM6	SOMATIC	ROS1	ROS1	6	6	113864279	117646417	IGR: 80Kb before LOC101927686(-)	Intron of ROS1(-):839bp before exon 34	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5558-839:ROS1_chr6:g.113864279inv	PRECISE		MANUAL_OK	3to3	-	3782138	NA	0	11	10	11
P-0056105-T01-IM6	SOMATIC	MDM2	NUP107	12	12	69102324	69229742	Intron of NUP107(+):693bp before exon 9	Exon 9 of MDM2(+)	GRCh37	DUPLICATION	MDM2 (NM_002392) - NUP107 (NM_020401) rearrangement: c.818:MDM2_c.730-694:NUP107dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MDM2:NUP107}	127418	NA	0	17	10	22
P-0056105-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41208656	41215810	Intron of BRCA1(-):412bp after exon 19	Intron of BRCA1(-):80bp after exon 17	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.5152+81_c.5277+413del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	7154	NA	0	75	10	77
P-0056105-T01-IM6	SOMATIC	IDH1	IDH1	2	2	209113479	209125457	Intron of IDH1(-):95bp before exon 4	IGR: 6Kb before IDH1-AS1(+)	GRCh37	DELETION	IDH1 (NM_005896) rearrangement: c.123-95:IDH1_chr2:g.209125457del	PRECISE		MANUAL_OK	3to5	-	11978	NA	0	15	10	15
P-0056108-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49426606	51176880	Exon 39 of KMT2D(-)	Intron of ATF1(+):3Kb after exon 2	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.11882:KMT2D_chr12:g.51176880del	PRECISE		MANUAL_OK	3to5	-	1750274	NA	0	73	10	74
P-0056108-T01-IM6	SOMATIC	MET	MET	7	6	116412457	32547935	Intron of MET(+):414bp after exon 14	Intron of HLA-DRB1(-):88bp after exon 5	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32547935::chr7:g.116412457)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {HLA-DRB1:MET}	0	NA	0	132	10	163
P-0056128-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11096064	11143947	Exon 3 of SMARCA4(+)	Intron of SMARCA4(+):18bp before exon 26	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.338_c.3547-19dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	47883	NA	0	8	10	8
P-0056135-T01-IM6	SOMATIC	EWSR1	NR4A3	22	9	29692908	102589553	Intron of EWSR1(+):550bp after exon 13	Intron of NR4A3(+):470bp after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986)- NR4A3 (NM_006981) rearrangement: t(9;22)(q22.33;q12.2)(chr9:g.102589553::chr22:g.29692908)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:NR4A3}	0	NA	0	8	5	7
P-0056142-T01-IM6	SOMATIC	RB1	RB1	13	13	48919416	49061160	Intron of RB1(+):81bp after exon 4	Promoter of RCBTB2(-):2Kb from tx start	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.500+81:RB1_chr13:g.49061160del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	141744	NA	0	8	0	8
P-0056301-T01-IM6	SOMATIC	FAM46C	FAM46C	8	1	114916663	118166330	IGR: 1Mb before MIR2053(+)	Exon 2 of FAM46C(+)	GRCh37	TRANSLOCATION	FAM46C (NM_017709) rearrangement: t(1;8)(p12;q23.3)(chr1:g.118166330::chr8:g.114916663)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	59	10	59
P-0056302-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68992925	68995398	Intron of PREX2(+):55bp before exon 17	Intron of PREX2(+):76bp before exon 18	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.1786-56_c.1879-77dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	2473	NA	0	5	0	5
P-0046981-T02-IM6	SOMATIC	PTPRT	PTPRT	20	20	40712676	40730809	Intron of PTPRT(-):645bp after exon 30	Exon 27 of PTPRT(-)	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.3726_c.4193+646inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	18133	NA	0	5	5	5
P-0047288-T07-IM6	SOMATIC	PBRM1	PBRM1	3	3	52408809	52584431	Intron of DNAH1(+):446bp before exon 45	Intron of PBRM1(-):5bp after exon 29	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.4576+6:PBRM1_chr3:g.52408809del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	175622	NA	0	23	10	23
P-0056333-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11093966	11107109	5-UTR of SMARCA4(+):861bp before coding start	Intron of SMARCA4(+):53bp after exon 10	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1761+53:SMARCA4_chr19:g.11093966del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13143	NA	0	5	5	5
P-0056343-T02-IM6	SOMATIC	CARM1	CARM1	19	19	7957495	11031724	5-UTR of LRRC8E(+):3Kb before coding start	Intron of CARM1(+):1bp before exon 14	GRCh37	DUPLICATION	CARM1 (NM_199141) rearrangement: c.1538-2:CARM1_chr19:g.7957495dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CARM1:LRRC8E}	3074229	NA	0	40	10	40
P-0056361-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16242894	16618835	Intron of SPEN(+):120bp after exon 6	Intron of FBXO42(-):2Kb after exon 4	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.1395+120:SPEN_chr1:g.16618835del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	375941	NA	0	15	10	15
P-0056361-T01-IM6	SOMATIC	CDK12	CDK12	17	4	37686959	74335447	Exon 14 of CDK12(+)	IGR: 12Kb before AFM(+)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(4;17)(q13.3;q12)(chr4:g.74335447::chr17:g.37686959)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	10	13
P-0056362-T01-IM6	SOMATIC	EP300	EP300	22	22	41547704	41562964	Intron of EP300(+):132bp before exon 15	Intron of EP300(+):294bp after exon 23	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.2818-133_c.3874+294inv	PRECISE		MANUAL_OK	5to5	-	15260	NA	0	3	7	3
P-0056372-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39822698	42872199	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2083:TMPRSS2_c.19-5154:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3049501	NA	0	12	10	12
P-0056377-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	54673761	55151600	IGR: 112Kb before LOC100506444(+)	Exon 17 of PDGFRA(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.2386:PDGFRA_chr4:g.54673761del	PRECISE		MANUAL_OK	3to5	-	477839	NA	0	2	4	2
P-0056378-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77047327	77048369	Exon 13 of PAK1(-)	Exon 12 of PAK1(-)	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.1216_c.1217del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1042	NA	0	3	6	3
P-0056378-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77048381	77051689	Exon 12 of PAK1(-)	Intron of PAK1(-):1bp after exon 11	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.1116+2_c.1204del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3308	NA	0	2	9	2
P-0056378-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	22	24129468	24141109	Intron of SMARCB1(+):19bp after exon 1	Intron of SMARCB1(+):2Kb before exon 4	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.93+19_c.363-2022del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	11641	NA	0	4	10	4
P-0056395-T01-IM6	SOMATIC	TRAF7	GNPTG	16	16	1404453	2222371	Intron of GNPTG(+):2Kb after exon 3	Exon 8 of TRAF7(+)	GRCh37	DUPLICATION	TRAF7 (NM_032271) - GNPTG (NM_032520) rearrangement: c.655:TRAF7_c.178+2146:GNPTGdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAF7:GNPTG}	817918	NA	0	37	10	41
P-0056397-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118376676	118378573	Exon 27 of KMT2A(+)	Intron of KMT2A(+):249bp after exon 28	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.10069_c.10835+249del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1897	NA	0	4	9	5
P-0056399-T01-IM6	SOMATIC	FGFR2	ZFAT	10	8	123240282	135564146	Intron of FGFR2(-):747bp before exon 18	Intron of ZFAT(-):13Kb after exon 12	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ZFAT (NM_020863) rearrangement: t(8;10)(q24.22;q26.13)(chr8:g.135564146::chr10:g.123240282)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:ZFAT}	0	NA	0	6	10	6
P-0056405-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33288340	71322470	Exon 4 of DAXX(-)	IGR: 46Kb before C6orf57(+)	GRCh37	INVERSION	DAXX (NM_001141970) rearrangement: c.1104:DAXX_chr6:g.71322470inv	PRECISE		MANUAL_OK	3to3	-	38034130	NA	0	47	10	46
P-0056405-T01-IM6	SOMATIC	PMS2	PMS2	7	7	6022527	61969020	Exon 12 of PMS2(-)	IGR: 783Kb before ZNF733P(-)	GRCh37	DELETION	PMS2 (NM_000535) rearrangement: c.2102:PMS2_chr7:g.61969020del	PRECISE		MANUAL_OK	3to5	-	55946493	NA	0	2	10	48
P-0045863-T02-IM6	SOMATIC	NCOA3	NCOA3	20	20	45791441	46268378	Intron of EYA2(+):6Kb before exon 11	Exon 15 of NCOA3(+)	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.2765:NCOA3_chr20:g.45791441inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	476937	NA	0	8	10	8
P-0045863-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55143392	55222429	Intron of EGFR(+):56Kb after exon 1	Intron of EGFR(+):584bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+56334_c.889+584del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	79037	NA	0	3	0	3
P-0045863-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55240902	55269419	Intron of EGFR(+):85bp after exon 17	Intron of EGFR(+):8bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+85_c.3115-9dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28517	NA	0	11	10	11
P-0045863-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268379	55271952	Intron of EGFR(+):273bp after exon 24	Intron of EGFR(+):996bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+273_c.3272-997del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3573	NA	0	4	0	4
P-0055879-T01-IM6	SOMATIC	KRT25	STAT5A	17	17	38906779	40458444	Exon 6 of KRT25(-)	Exon 14 of STAT5A(+)	GRCh37	INVERSION	KRT25 (NM_181534) - STAT5A (NM_003152) rearrangement: c.1028:KRT25_c.1659:STAT5Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KRT25:STAT5A}	1551665	NA	0	22	10	33
P-0009286-T03-IM6	SOMATIC	GMCL1	EPCAM	2	2	47604197	70074449	Exon 5 of EPCAM(+)	Intron of GMCL1(+):225bp before exon 7	GRCh37	DUPLICATION	GMCL1 (NM_178439) - EPCAM (NM_002354) rearrangement: c.759-226:GMCL1_c.536:EPCAMdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GMCL1:EPCAM}	22470252	NA	0	6	10	7
P-0009286-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39947178	42874559	Intron of ERG(-):407bp after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4443:TMPRSS2_c.39+408:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2927381	NA	0	73	10	76
P-0014506-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	43042059	78867563	Intron of C1QL1(-):3Kb after exon 1	Exon 20 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.2299:RPTOR_chr17:g.43042059del	PRECISE		MANUAL_OK	3to5	-	35825504	NA	0	76	10	81
P-0014506-T02-IM6	SOMATIC	CD74	ROS1	6	5	117650623	149782872	Intron of ROS1(-):14bp before exon 32	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782872::chr6:g.117650623)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	341	10	361
P-0056305-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52631383	52658782	Intron of PBRM1(-):6Kb after exon 18	Intron of PBRM1(-):3Kb after exon 14	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1541+2507_c.2779+6154del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	27399	NA	0	8	10	8
P-0056305-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187522579	187524056	Exon 21 of FAT1(-)	Exon 20 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.11482+1_c.11484del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1477	NA	0	3	9	3
P-0056305-T01-IM6	SOMATIC	ATRX	ATRX	X	X	73884061	76907739	IGR: 69Kb before KIAA2022(-)	Exon 15 of ATRX(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.4422:ATRX_chrX:g.73884061del	PRECISE		MANUAL_OK	3to5	-	3023678	NA	0	11	10	11
P-0056520-T01-IM6	SOMATIC	TOMM70A	RAF1	3	3	12645745	100119030	Exon 7 of RAF1(-)	Intron of TOMM70A(-):439bp after exon 1	GRCh37	DELETION	TOMM70A (NM_014820) - RAF1 (NM_002880) rearrangement: c.324+440:TOMM70A_c.724:RAF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TOMM70A:RAF1}	87473285	NA	0	58	10	61
P-0056520-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21927052	21970858	IGR: 40Kb before CDKN2A-AS1(+)	Intron of CDKN2A(-):42bp after exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.457+43:CDKN2A_chr9:g.21927052del	PRECISE		MANUAL_OK	3to5	-	43806	NA	0	179	10	201
P-0056555-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46738399	169808957	Exon 13 of RAD54L(+)	Intron of C1orf112(+):3Kb before exon 18	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.1300:RAD54L_chr1:g.169808957inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	123070558	NA	0	7	0	8
P-0056555-T01-IM6	SOMATIC	PAX8	PAX8	8	2	77247601	113983333	IGR: 71Kb before LINC01111(+)	Intron of PAX8(-):1Kb after exon 10	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;8)(q13;q21.11)(chr2:g.113983333::chr8:g.77247601)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	17	10	23
P-0056563-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212175007	212293075	IGR: 65Kb before ERBB4(-)	Intron of ERBB4(-):57bp after exon 22	GRCh37	INVERSION	ERBB4 (NM_005235) rearrangement: c.2719+58:ERBB4_chr2:g.212175007inv	IMPPRECISE		MANUAL_OK	5to5	-	118068	NA	0	43	0	46
P-0056564-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8340239	8341015	Intron of PTPRD(-):103bp after exon 42	Intron of PTPRD(-):74bp after exon 41	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.5126+75_c.5253+104del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	776	NA	0	68	10	69
P-0044006-T02-IM6	SOMATIC	ERCC2	ERCC2	19	15	45856325	66911351	Intron of ERCC2(-):15bp after exon 19	5-UTR of LINC01169(+):67Kb before coding start	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) rearrangement: t(15;19)(q22.31;q13.32)(chr15:g.66911351::chr19:g.45856325)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {ERCC2:LINC01169}	0	NA	0	8	10	8
P-0050123-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40094251	42867209	IGR: 17Kb before LINC00114(-)	Intron of TMPRSS2(-):704bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-704:TMPRSS2_chr21:g.40094251del	PRECISE		MANUAL_OK	3to5	-	2772958	NA	0	30	10	38
P-0056392-T01-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2421499	2491985	Intron of PLCH2(+):193bp after exon 10	Intron of TNFRSF14(+):77bp before exon 5	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.461-78:TNFRSF14_chr1:g.2421499inv	PRECISE		MANUAL_OK	5to5	-	70486	NA	0	19	10	20
P-0056425-T01-IM6	SOMATIC	NF1	NF1	17	17	29657472	68914013	Exon 39 of NF1(+)	IGR: 180Kb before CASC17(-)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.5768:NF1_chr17:g.68914013inv	PRECISE		MANUAL_OK	3to3	-	39256541	NA	0	17	10	17
P-0056500-T01-IM6	SOMATIC	PTPN11	PTPN11	12	4	112888102	172542014	Intron of PTPN11(+):19bp before exon 3	IGR: 193Kb before GALNTL6(+)	GRCh37	TRANSLOCATION	PTPN11 (NM_002834) rearrangement: t(4;12)(q34.1;q24.13)(chr4:g.172542014::chr12:g.112888102)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	51	10	51
P-0056502-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	63602288	118347732	IGR: 4Kb before MARK2(+)	Intron of KMT2A(+):35bp after exon 4	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.3334+35:KMT2A_chr11:g.63602288inv	PRECISE		MANUAL_OK	3to3	-	54745444	NA	0	55	10	54
P-0056432-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11142670	11144957	Intron of SMARCA4(+):1Kb after exon 25	Intron of SMARCA4(+):81bp after exon 28	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.3546+1101_c.3951+81dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	2287	NA	0	46	10	49
P-0056451-T01-IM6	SOMATIC	SDHAF2	SDHAF2	11	11	61205194	71234572	Exon 2 of SDHAF2(+)	IGR: 4Kb before KRTAP5-7(+)	GRCh37	INVERSION	SDHAF2 (NM_017841) rearrangement: c.134:SDHAF2_chr11:g.71234572inv	PRECISE		MANUAL_OK	5to5	-	10029378	NA	0	50	10	55
P-0056451-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46231391	46234116	Exon 10 of ARID2(+)	Intron of ARID2(+):837bp after exon 11	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.1231_c.1498+837del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2725	NA	0	57	10	60
P-0056533-T01-IM6	SOMATIC	DNMT1	SLC22A25	19	11	10305505	62996421	Exon 1 of DNMT1(-)	Intron of SLC22A25(-):301bp after exon 1	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) - SLC22A25 (NM_199352) rearrangement: t(11;19)(q12.3;p13.2)(chr11:g.62996421::chr19:g.10305505)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT1:SLC22A25}	0	NA	0	30	10	30
P-0056535-T01-IM6	SOMATIC	IKZF1	IKZF1	7	7	50452638	50455171	Intron of IKZF1(+):2Kb after exon 5	Intron of IKZF1(+):3bp after exon 6	GRCh37	DELETION	IKZF1 (NM_006060) rearrangement: c.593+2233_c.719+3del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2533	NA	0	5	10	5
P-0056536-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25461806	25497959	Intron of DNMT3A(-):192bp after exon 20	Intron of DNMT3A(-):3bp before exon 6	GRCh37	DUPLICATION	DNMT3A (NM_022552) rearrangement: c.493-3_c.2408+193dup	PRECISE		MANUAL_OK	5to3	Duplication of 15 exons : out of frame	36153	NA	0	52	10	55
P-0056539-T01-IM6	SOMATIC	MSH3	MSH3	5	5	75433217	79968033	Intron of SV2C(+):5Kb after exon 2	Intron of MSH3(+):29bp before exon 5	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: c.793-30:MSH3_chr5:g.75433217inv	PRECISE		MANUAL_OK	5to5	-	4534816	NA	0	5	9	6
P-0056540-T01-IM6	SOMATIC	ADCY9	AXIN1	16	16	360050	4075705	Exon 4 of AXIN1(-)	Intron of ADCY9(-):18Kb before exon 3	GRCh37	DELETION	ADCY9 (NM_001116) - AXIN1 (NM_003502) rearrangement: c.1694-18146:ADCY9_c.1039:AXIN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ADCY9:AXIN1}	3715655	NA	0	42	10	46
P-0036133-T02-IM6	SOMATIC	KMT2A	KMT2A	16	11	22942901	118392229	IGR: 117Kb before HS3ST2(+)	Intron of KMT2A(+):97bp after exon 35	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(11;16)(q23.3;p12.2)(chr11:g.118392229::chr16:g.22942901)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	7	5
P-0040826-T02-IM6	SOMATIC	BMPR1A	BMPR1A	10	10	60933282	88659740	IGR: 3Kb before PHYHIPL(+)	Intron of BMPR1A(+):43bp before exon 7	GRCh37	INVERSION	BMPR1A (NM_004329) rearrangement: c.431-44:BMPR1A_chr10:g.60933282inv	PRECISE		MANUAL_OK	3to3	-	27726458	NA	0	50	10	50
P-0040826-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39886256	42869005	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1041:TMPRSS2_c.39+61330:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2982749	NA	0	9	0	9
P-0051292-T02-IM6	SOMATIC	PAX8	PAX8	2	2	113982367	113987733	Intron of PAX8(-):2Kb after exon 10	Intron of PAX8(-):3Kb before exon 10	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1088-2900_c.1189+2365del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	5366	NA	0	29	10	30
P-0056323-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29685698	128659413	Intron of EWSR1(+):923bp after exon 9	Intron of FLI1(+):7Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128659413::chr22:g.29685698)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	49	10	52
P-0056614-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15361984	15376290	Intron of BRD4(-):3Kb after exon 11	Exon 5 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.724_c.2158+2979del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14306	NA	0	11	0	11
P-0055141-T03-IM6	SOMATIC	FLT4	FLT4	5	4	180043447	190604602	Exon 23 of FLT4(-)	IGR: 24Kb before LINC01262(+)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(4;5)(q35.2;q35.3)(chr4:g.190604602::chr5:g.180043447)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	61	10	64
P-0056609-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63851486	63852251	Exon 10 of ARID5B(+)	Exon 10 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.2264_c.3029del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	765	NA	0	19	10	20
P-0056610-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37876051	38485151	Exon 16 of ERBB2(+)	5-UTR of RARA(+):2Kb before coding start	GRCh37	DUPLICATION	ERBB2 (NM_004448) rearrangement: c.1910:ERBB2_chr17:g.38485151dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RARA:ERBB2}	609100	NA	0	14	10	14
P-0056712-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684489	128672121	Intron of EWSR1(+):105bp before exon 9	Intron of FLI1(+):3Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128672121::chr22:g.29684489)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	81	10	86
P-0034085-T02-IM6	SOMATIC	TET1	TET1	10	10	70442698	70448459	Exon 10 of TET1(+)	Intron of TET1(+):2Kb after exon 11	GRCh37	DELETION	TET1 (NM_030625) rearrangement: c.5020_c.5404+1995del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5761	NA	0	5	0	5
P-0053200-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57487609	57493032	Intron of NAB2(+):228bp after exon 6	Intron of STAT6(-):44bp after exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+228:NAB2_c.1891+45:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5423	NA	0	51	10	50
P-0054941-T01-IM6	SOMATIC	TPM3	ROS1	6	1	117644481	154132020	Intron of ROS1(-):1Kb after exon 34	Intron of TPM3(-):2Kb before exon 7	GRCh37	TRANSLOCATION	TPM3 (NM_001278191) - ROS1 (NM_002944) rearrangement: t(1;6)(q21.3;q22.1)(chr1:g.154132020::chr6:g.117644481)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TPM3:ROS1}	0	NA	0	33	10	34
P-0055056-T01-IM6	SOMATIC	DNAJB1	PRKACA	19	19	14228258	14628384	Intron of PRKACA(-):55bp after exon 1	Intron of DNAJB1(-):526bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-526:DNAJB1_c.46+56:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	400126	NA	0	12	10	12
P-0055454-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123200192	123202785	Intron of STAG2(+):13bp before exon 23	Intron of STAG2(+):279bp after exon 24	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.2185-14_c.2358+279del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2593	NA	0	55	10	58
P-0056620-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	145138800	157431496	Intron of UTRN(+):3Kb before exon 65	Intron of ARID1B(+):109bp before exon 7	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.2282-110:ARID1B_chr6:g.145138800inv	PRECISE		MANUAL_OK	5to5	-	12292696	NA	0	16	10	16
P-0056620-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151856291	152792494	Intron of KMT2C(-):134bp before exon 44	IGR: 305Kb before LINC01287(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11461-134:KMT2C_chr7:g.152792494del	PRECISE		MANUAL_OK	3to5	-	936203	NA	0	11	10	11
P-0056622-T01-IM6	SOMATIC	INPPL1	INPPL1	11	1	71946650	186259677	Intron of INPPL1(+):68bp before exon 24	3-UTR of RNU6-72P(-):21Kb after coding stop	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(1;11)(q31.1;q13.4)(chr1:g.186259677::chr11:g.71946650)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	6
P-0056622-T01-IM6	SOMATIC	ANKFN1	CDK12	17	17	37619399	54313949	Intron of CDK12(+):29bp after exon 1	Intron of ANKFN1(+):9Kb after exon 2	GRCh37	DUPLICATION	ANKFN1 (NM_153228) - CDK12 (NM_016507) rearrangement: c.62+8631:ANKFN1_c.1046+29:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ANKFN1:CDK12}	16694550	NA	0	3	7	3
P-0056622-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78865376	80536203	Intron of RPTOR(+):143bp before exon 18	Intron of FOXK2(+):4Kb before exon 5	GRCh37	INVERSION	RPTOR (NM_020761) rearrangement: c.1984-144:RPTOR_chr17:g.80536203inv	PRECISE		MANUAL_OK	5to5	-	1670827	NA	0	11	10	11
P-0056623-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71021451	71050963	Intron of FOXP1(-):254bp after exon 14	Intron of FOXP1(-):753bp before exon 9	GRCh37	DUPLICATION	FOXP1 (NM_001244814) rearrangement: c.975-753_c.1652+255dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	29512	NA	0	10	10	10
P-0056623-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38285913	38299186	Exon 5 of FGFR1(-)	Intron of FGFR1(-):12Kb before exon 4	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.191-11720_c.498dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	13273	NA	0	106	10	109
P-0056626-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	17	8	37397089	38175576	IGR: 12Kb before FBXL20(-)	Intron of WHSC1L1(-):836bp after exon 9	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) rearrangement: t(8;17)(p11.23;q12)(chr8:g.38175576::chr17:g.37397089)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0056626-T01-IM6	SOMATIC	GNAS	GNAS	20	20	37830672	57473996	IGR: 12Kb before LOC339568(-)	Exon 3 of GNAS(+)	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.213:GNAS_chr20:g.37830672inv	PRECISE		MANUAL_OK	5to5	-	19643324	NA	0	34	10	34
P-0056626-T01-IM6	SOMATIC	TFE3	TFE3	X	X	47051560	48892259	5-UTR of UBA1(+):7Kb before coding start	Intron of TFE3(-):493bp before exon 6	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.886-493:TFE3_chrX:g.47051560inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TFE3:UBA1}	1840699	NA	0	4	10	5
P-0040533-T03-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46508673	46511557	3-UTR of PIK3R3(-):671bp after coding stop	Intron of PIK3R3(-):32bp after exon 9	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.1187+33:PIK3R3_chr1:g.46508673del	PRECISE		MANUAL_OK	3to5	-	2884	NA	0	14	10	17
P-0040533-T03-IM6	SOMATIC	ELF3	ELF3	6	1	21341871	201982562	IGR: 144Kb before LINC00581(-)	Intron of ELF3(+):136bp after exon 7	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;6)(q32.1;p22.3)(chr1:g.201982562::chr6:g.21341871)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	21	0	19
P-0046580-T04-IM6	SOMATIC	ATF6	NUF2	1	1	161844547	163325067	Intron of ATF6(+):11Kb after exon 14	Intron of NUF2(+):57bp before exon 14	GRCh37	DELETION	ATF6 (NM_007348) - NUF2 (NM_031423) rearrangement: c.1719+11445:ATF6_c.1261-58:NUF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ATF6:NUF2}	1480520	NA	0	2	7	3
P-0046580-T04-IM6	SOMATIC	TMEM127	FAM178B	2	2	96930921	97581617	Exon 2 of TMEM127(-)	Intron of FAM178B(-):5Kb after exon 12	GRCh37	DUPLICATION	TMEM127 (NM_001193304) - FAM178B (NM_001122646) rearrangement: c.199:TMEM127_c.1562+5285:FAM178Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TMEM127:FAM178B}	650696	NA	0	11	10	13
P-0046580-T04-IM6	SOMATIC	WHSC1	WHSC1	4	4	1773704	1920019	IGR: 21Kb before FGFR3(+)	Exon 5 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1079:WHSC1_chr4:g.1773704del	PRECISE		MANUAL_OK	3to5	-	146315	NA	0	3	7	3
P-0055939-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40410380	42872375	IGR: 64Kb before LOC101928435(-)	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2259:TMPRSS2_chr21:g.40410380inv	IMPPRECISE		MANUAL_OK	5to5	-	2461995	NA	0	6	0	7
P-0056469-T02-IM6	SOMATIC	KMT2D	GRIN2B	12	12	13755084	49424916	Intron of GRIN2B(-):6Kb after exon 9	Intron of KMT2D(-):41bp after exon 39	GRCh37	DELETION	KMT2D (NM_003482) - GRIN2B (NM_000834) rearrangement: c.13530+42:KMT2D_c.2010+6453:GRIN2Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {KMT2D:GRIN2B}	35669832	NA	0	5	6	5
P-0056575-T01-IM6	SOMATIC	EWSR1	CREB1	22	2	29684370	208438926	Intron of EWSR1(+):224bp before exon 9	Intron of CREB1(+):1Kb before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB1 (NM_134442) fusion: t(2;22)(q33.3;q12.2)(chr2:g.208438926::chr22:g.29684370)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB1}	0	NA	0	56	10	57
P-0056719-T01-IM6	SOMATIC	SDHA	CLPTM1L	5	5	236849	1330835	Intron of SDHA(+):135bp after exon 10	Intron of CLPTM1L(-):337bp before exon 9	GRCh37	INVERSION	SDHA (NM_004168) - CLPTM1L (NM_030782) rearrangement: c.1432+135:SDHA_c.977-337:CLPTM1Linv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SDHA:CLPTM1L}	1093986	NA	0	12	10	27
P-0056722-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68842355	68848406	Exon 4 of CDH1(+)	Intron of CDH1(+):1Kb after exon 9	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement: c.416_c.1320+1008dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6051	NA	0	43	10	45
P-0056726-T01-IM6	SOMATIC	PAX5	PAX5	9	9	36923250	36948291	Intron of PAX5(-):101bp after exon 7	Intron of PAX5(-):18Kb after exon 6	GRCh37	DUPLICATION	PAX5 (NM_016734) rearrangement: c.780+18255_c.910+102dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	25041	NA	0	21	10	22
P-0056750-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50904665	50910796	Intron of POLD1(+):369bp before exon 4	Intron of POLD1(+):124bp after exon 14	GRCh37	DUPLICATION	POLD1 (NM_002691) rearrangement: c.317-370_c.1775+124dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	6131	NA	0	40	10	41
P-0035162-T05-IM6	SOMATIC	POLD1	POLD1	19	19	50904797	50905760	Intron of POLD1(+):237bp before exon 4	Exon 7 of POLD1(+)	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.317-238_c.808inv	PRECISE		MANUAL_OK	5to5	-	963	NA	0	22	10	25
P-0052359-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41226412	41226677	Exon 14 of BRCA1	Intron of BRCA1: 139bp before exon 14	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.4611_c.4485-139inv	PRECISE		MANUAL_OK	3to3	Inversion within transcript: mid-exon	265	NA	0	286	10	286
P-0052359-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117870463	117875456	Intron of RAD21(-):127bp after exon 5	Exon 3 of RAD21(-)	GRCh37	DUPLICATION	RAD21 (NM_006265) rearrangement: c.187_c.481+128dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4993	NA	0	7	10	7
P-0056177-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39908577	42869025	Intron of ERG(-):39Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1021:TMPRSS2_c.39+39009:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2960448	NA	0	3	10	4
P-0056638-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10246454	55441613	Exon 38 of DNMT1(-)	Intron of NLRP7(-):253bp after exon 9	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.4683:DNMT1_chr19:g.55441613inv	PRECISE		MANUAL_OK	3to3	-	45195159	NA	0	5	8	5
P-0056639-T01-IM6	SOMATIC	SETBP1	BRAF	18	7	42638299	140486594	Intron of SETBP1(+):5Kb before exon 6	Intron of BRAF(-):753bp after exon 9	GRCh37	TRANSLOCATION	SETBP1 (NM_015559) - BRAF (NM_004333) fusion: t(7;18)(q34;q12.3)(chr7:g.140486594::chr18:g.42638299)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SETBP1:BRAF}	0	NA	1	53	10	52
P-0056646-T01-IM6	SOMATIC	TP53	WWOX	17	16	7576828	78138812	Intron of TP53(-):24bp after exon 9	Intron of WWOX(+):4Kb before exon 2	GRCh37	TRANSLOCATION	TP53 (NM_000546) - WWOX (NM_016373) rearrangement: t(16;17)(q23.1;p13.1)(chr16:g.78138812::chr17:g.7576828)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TP53:WWOX}	0	NA	0	65	10	85
P-0056686-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39914298	42872567	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2451:TMPRSS2_c.39+33288:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2958269	NA	0	67	10	71
P-0056737-T01-IM6	SOMATIC	ROS1	ROS1	15	6	91816192	117659699	Intron of SV2B(+):4Kb after exon 8	Intron of ROS1(-):1Kb before exon 31	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;15)(q22.1;q26.1)(chr6:g.117659699::chr15:g.91816192)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	19	10	21
P-0056769-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	383679	397156	Intron of AXIN1(-):12Kb after exon 2	5-UTR of AXIN1(-):59Kb before coding start	GRCh37	INVERSION	AXIN1 (NM_003502) rearrangement: c.878+12469:AXIN1_chr16:g.397156inv	PRECISE		MANUAL_OK	3to3	-	13477	NA	0	18	10	18
P-0056770-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59472930	59820529	3-UTR of TBX2-AS1(-):4Kb after coding stop	Intron of BRIP1(-):34bp before exon 16	GRCh37	DUPLICATION	BRIP1 (NM_032043) rearrangement: c.2258-34:BRIP1_chr17:g.59472930dup	PRECISE		MANUAL_OK	5to3	-	347599	NA	0	12	10	12
P-0015646-T04-IM6	SOMATIC	ARID1A	ARID1A	1	1	27023416	43502903	Exon 1 of ARID1A(+)	IGR: 78Kb before SLC2A1-AS1(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.522:ARID1A_chr1:g.43502903inv	PRECISE		MANUAL_OK	3to3	-	16479487	NA	0	63	10	63
P-0015646-T04-IM6	SOMATIC	FAT1	FAT1	4	4	163601704	187629007	IGR: 446Kb before NAF1(-)	Exon 2 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.1975:FAT1_chr4:g.163601704inv	PRECISE		MANUAL_OK	3to3	-	24027303	NA	0	43	10	43
P-0024340-T04-IM6	SOMATIC	NSD1	NSD1	5	5	176673820	177824879	Intron of NSD1(+):23bp after exon 10	Intron of COL23A1(-):91Kb before exon 3	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.4497+23:NSD1_chr5:g.177824879del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1151059	NA	0	45	10	45
P-0024340-T04-IM6	SOMATIC	KMT2C	KMT2C	7	7	151880323	152488340	Intron of KMT2C(-):82bp before exon 35	Intron of ACTR3B(+):8Kb after exon 2	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.5083-82:KMT2C_chr7:g.152488340del	PRECISE		MANUAL_OK	3to5	-	608017	NA	0	4	6	5
P-0056842-T01-IM6	SOMATIC	PTEN	PTEN	14	10	74421170	89624338	Intron of COQ6(+):898bp after exon 2	Intron of PTEN(+):33bp after exon 1	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;14)(q23.31;q24.3)(chr10:g.89624338::chr14:g.74421170)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	96	10	104
P-0056842-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39928395	42871428	Intron of ERG(-):19Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1312:TMPRSS2_c.39+19191:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2943033	NA	0	101	10	106
P-0056849-T01-IM6	SOMATIC	NSD1	NSD1	5	5	168968619	176638244	IGR: 42Kb before SPDL1(+)	Exon 5 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.2844:NSD1_chr5:g.168968619del	PRECISE		MANUAL_OK	3to5	-	7669625	NA	0	34	10	36
P-0056851-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5042669	5111564	Intron of JAK2(+):2Kb before exon 5	Intron of JAK2(+):11Kb before exon 23	GRCh37	DUPLICATION	JAK2 (NM_004972) rearrangement: c.351-1734_c.3060-11440dup	PRECISE		MANUAL_OK	5to3	Duplication of 18 exons : in frame	68895	NA	0	6	8	6
P-0056854-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2113152	2116756	Intron of TSC2(+):98bp after exon 14	Intron of TSC2(+):1Kb after exon 16	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1443+98_c.1716+1120del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	3604	NA	0	7	0	7
P-0056854-T01-IM6	SOMATIC	TOP1	TOP1	20	20	38343636	39744025	IGR: 289Kb before LINC01370(+)	Exon 16 of TOP1(+)	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.1653:TOP1_chr20:g.38343636del	IMPPRECISE		MANUAL_OK	3to5	-	1400389	NA	0	6	0	6
P-0007565-T02-IM6	SOMATIC	BAD	RPS6KA4	11	11	64038183	64128886	Intron of BAD(-):374bp before exon 3	Intron of RPS6KA4(+):54bp before exon 6	GRCh37	INVERSION	BAD (NM_032989) - RPS6KA4 (NM_003942) rearrangement: c.379-374:BAD_c.571-55:RPS6KA4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BAD:RPS6KA4}	90703	NA	0	27	10	34
P-0012873-T02-IM6	SOMATIC	EML4	ALK	2	2	29446439	42524887	Intron of ALK(-):45bp before exon 20	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2231:EML4_c.3173-45:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078448	NA	0	208	10	206
P-0023023-T04-IM6	SOMATIC	FAT1	FAT1	4	4	187500064	187524752	IGR: 9Kb before FAT1(-)	Exon 19 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.10928:FAT1_chr4:g.187500064del	PRECISE		MANUAL_OK	3to5	-	24688	NA	0	9	10	14
P-0023746-T02-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974749	22278766	Exon 1 of CDKN2A(-)	IGR: 168Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3542:CDKN2A_chr9:g.22278766del	PRECISE		MANUAL_OK	3to5	-	304017	NA	0	45	10	48
P-0030967-T04-IM6	SOMATIC	PREX2	PREX2	8	8	68908168	68942786	Intron of PREX2(+):22Kb before exon 2	Exon 6 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.142-21913_c.598dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	34618	NA	0	18	10	30
P-0030967-T04-IM6	SOMATIC	JAK2	JAK2	9	9	5076341	5111285	Intron of JAK2(+):1Kb before exon 15	Intron of JAK2(+):12Kb before exon 23	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.1865-1112_c.3060-11719del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	34944	NA	0	2	5	3
P-0032808-T02-IM6	SOMATIC	MSH2	MSH2	11	2	601500	47630597	Intron of PHRF1(+):73bp before exon 10	Intron of MSH2(+):56bp after exon 1	GRCh37	TRANSLOCATION	MSH2 (NM_000251) rearrangement: t(2;11)(p21;p15.5)(chr2:g.47630597::chr11:g.601500)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	54	10	55
P-0032808-T02-IM6	SOMATIC	RECQL4	RECQL4	12	8	113495287	145741889	Promoter of DTX1(+):374bp from tx start	Exon 5 of RECQL4(-)	GRCh37	TRANSLOCATION	RECQL4 (NM_004260) rearrangement: t(8;12)(q24.3;q24.13)(chr8:g.145741889::chr12:g.113495287)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	106	10	116
P-0032808-T02-IM6	SOMATIC	NCOA3	EYA2	20	20	45784826	46264899	Intron of EYA2(+):13Kb before exon 11	Exon 12 of NCOA3(+)	GRCh37	DUPLICATION	NCOA3 (NM_181659) - EYA2 (NM_005244) rearrangement: c.1769:NCOA3_c.979-12961:EYA2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOA3:EYA2}	480073	NA	0	24	10	26
P-0032808-T02-IM6	SOMATIC	INPP4B	INPP4B	4	4	143094955	143384539	Exon 16 of INPP4B(-)	5-UTR of INPP4B(-):435Kb before coding start	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.1189:INPP4B_chr4:g.143384539del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	289584	NA	0	59	10	60
P-0040386-T01-IM6	SOMATIC	TSC1	TSC1	10	9	120090828	135797351	Intron of FAM204A(-):4Kb after exon 5	Exon 7 of TSC1(-)	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(9;10)(q34.13;q26.11)(chr9:g.135797351::chr10:g.120090828)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	7	10	9
P-0040386-T01-IM6	SOMATIC	ABL1	ABL1	9	9	133747447	133759809	Intron of ABL1(+):68bp before exon 5	Exon 11 of ABL1(+)	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.823-69_c.2132del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12362	NA	0	11	10	11
P-0042807-T03-IM6	SOMATIC	EGFR	EGFR	7	7	55187899	55223158	Intron of EGFR(+):22Kb before exon 2	Intron of EGFR(+):364bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-22080_c.890-365del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	35259	NA	0	10	10	12
P-0043656-T02-IM6	SOMATIC	RAD51B	RAD51B	14	14	68319058	68878470	Intron of RAD51B(+):13Kb before exon 5	Intron of RAD51B(+):226bp after exon 9	GRCh37	DUPLICATION	RAD51B (NM_133509) rearrangement: c.316-12662_c.957+226dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	559412	NA	0	4	5	4
P-0043656-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55219075	63980427	Intron of EGFR(+):20bp after exon 5	3-UTR of ZNF680(-):1Kb after coding stop	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.628+20:EGFR_chr7:g.63980427del	PRECISE		MANUAL_OK	3to5	-	8761352	NA	0	4	7	4
P-0044970-T02-IM6	SOMATIC	NF1	NF1	17	17	29479599	29508858	Intron of NF1(+):3Kb before exon 2	Intron of NF1(+):55bp after exon 7	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.61-3402_c.730+55inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	29259	NA	0	80	10	79
P-0044970-T02-IM6	SOMATIC	KMT2B	KMT2B	19	17	36210844	7218376	Exon 3 of KMT2B(+)	5-UTR of GPS2(-):2Kb before coding start	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(17;19)(p13.1;q13.12)(chr17:g.7218376::chr19:g.36210844)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KMT2B:GPS2}	0	NA	0	334	10	333
P-0048102-T05-IM6	SOMATIC	STRN	ALK	2	2	29447056	37140460	Intron of ALK(-):662bp before exon 20	Intron of STRN(-):3Kb after exon 3	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion: c.412+2761:STRN_c.3173-662:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {STRN:ALK}	7693404	NA	0	9	10	9
P-0050357-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11096965	11105279	Exon 4 of SMARCA4(+)	Intron of SMARCA4(+):224bp before exon 9	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.456_c.1420-225del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8314	NA	0	33	10	34
P-0052152-T02-IM6	SOMATIC	KMT2B	KMT2B	19	19	36223271	56340770	Exon 28 of KMT2B(+)	5-UTR of NLRP11(-):44Kb before coding start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.5821:KMT2B_chr19:g.56340770inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NLRP11:KMT2B}	20117499	NA	0	8	10	9
P-0052448-T02-IM6	SOMATIC	STAT5B	STAT5B	17	17	40354939	46524723	Intron of STAT5B(-):113bp before exon 17	5-UTR of LOC101927166(+):19Kb before coding start	GRCh37	DELETION	STAT5B (NM_012448) rearrangement: c.2078-113:STAT5B_chr17:g.46524723del	PRECISE		MANUAL_OK	3to5	-	6169784	NA	1	23	10	38
P-0052448-T03-IM6	SOMATIC	STAT5B	STAT5B	17	17	40354939	46524723	Intron of STAT5B(-):113bp before exon 17	5-UTR of LOC101927166(+):19Kb before coding start	GRCh37	DELETION	STAT5B (NM_012448) rearrangement: c.2078-113:STAT5B_chr17:g.46524723del	PRECISE		MANUAL_OK	3to5	-	6169784	NA	1	68	10	98
P-0053409-T03-IM6	SOMATIC	RPTOR	RPTOR	17	17	78761432	78811634	Intron of RPTOR(+):4Kb before exon 7	Intron of RPTOR(+):87bp before exon 10	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.831-3818_c.1137-88del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	50202	NA	0	7	10	7
P-0054241-T02-IM6	SOMATIC	RFWD2	RFWD2	1	1	175102716	176175963	Intron of TNN(+):2Kb before exon 16	Exon 1 of RFWD2(-)	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.152:RFWD2_chr1:g.175102716del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1073247	NA	0	37	10	38
P-0055297-T02-IM6	SOMATIC	KMT2B	ZNF507	19	19	32860204	36210839	Intron of ZNF507(+):9Kb after exon 4	Exon 3 of KMT2B(+)	GRCh37	DUPLICATION	KMT2B (NM_014727) - ZNF507 (NM_014910) rearrangement: c.590:KMT2B_c.2360+8680:ZNF507dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2B:ZNF507}	3350635	NA	0	120	10	135
P-0055297-T02-IM6	SOMATIC	CIC	CIC	19	19	41149495	42798874	IGR: 22Kb before NUMBL(-)	Exon 19 of CIC(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.4446:CIC_chr19:g.41149495inv	PRECISE		MANUAL_OK	3to3	-	1649379	NA	0	112	10	113
P-0055696-T01-IM6	SOMATIC	RIT1	RIT1	1	1	155874782	162473262	Intron of RIT1(-):187bp before exon 4	Intron of UHMK1(+):281bp before exon 4	GRCh37	DELETION	RIT1 (NM_006912) rearrangement: c.164-187:RIT1_chr1:g.162473262del	PRECISE		MANUAL_OK	3to5	-	6598480	NA	0	5	10	5
P-0056146-T03-IM6	SOMATIC	PTEN	PTEN	10	10	89648337	89692692	Intron of PTEN(+):5Kb before exon 2	Intron of PTEN(+):77bp before exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-5445_c.254-78del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	44355	NA	0	10	0	11
P-0056185-T02-IM6	SOMATIC	IKBKE	IKBKE	12	1	98574161	206667151	IGR: 185Kb before MIR4303(-)	Intron of IKBKE(+):101bp before exon 21	GRCh37	TRANSLOCATION	IKBKE (NM_014002) rearrangement: t(1;12)(q32.1;q23.1)(chr1:g.206667151::chr12:g.98574161)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	10	27
P-0056185-T02-IM6	SOMATIC	ABCC4	VEGFA	13	6	95869663	43752221	Intron of ABCC4(-):7Kb before exon 5	Intron of VEGFA(+):56bp before exon 8	GRCh37	TRANSLOCATION	ABCC4 (NM_005845) - VEGFA (NM_001171623) rearrangement: t(6;13)(p21.1;q32.1)(chr6:g.43752221::chr13:g.95869663)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ABCC4:VEGFA}	0	NA	0	34	10	40
P-0056185-T02-IM6	SOMATIC	TP53	TP53	17	17	7579564	7580741	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.123:TP53_chr17:g.7580741del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1177	NA	0	107	10	119
P-0056185-T02-IM6	SOMATIC	SUZ12	SUZ12	17	17	30293216	30294935	Intron of SUZ12(+):1bp after exon 5	Intron of SUZ12(+):2Kb after exon 5	GRCh37	INVERSION	SUZ12 (NM_015355) rearrangement: c.505+1_c.505+1720inv	PRECISE		MANUAL_OK	5to5	-	1719	NA	0	3	10	10
P-0056250-T02-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120496682	120497961	Intron of NOTCH2(-):371bp before exon 14	Intron of NOTCH2(-):106bp before exon 13	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.2027-106_c.2220-371inv	PRECISE		MANUAL_OK	3to3	-	1279	NA	0	4	5	4
P-0056296-T02-IM6	SOMATIC	ELF3	ELF3	1	1	201980873	201982613	Intron of ELF3(+):211bp before exon 3	Intron of ELF3(+):187bp after exon 7	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.164-212_c.805+187del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	1740	NA	0	5	0	5
P-0056509-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29685275	128648407	Intron of EWSR1(+):500bp after exon 9	Intron of FLI1(+):3Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128648407::chr22:g.29685275)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	107	10	108
P-0056667-T02-IM6	SOMATIC	AXIN2	AXIN2	17	17	63530054	65771907	Exon 10 of AXIN2(-)	IGR: 35Kb before SNORA38B(+)	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.2381:AXIN2_chr17:g.65771907inv	PRECISE		MANUAL_OK	5to5	-	2241853	NA	0	91	10	108
P-0056667-T02-IM6	SOMATIC	MAP3K14	MAP3K14	20	17	19463571	43345217	Intron of SLC24A3(+):33Kb before exon 3	Intron of MAP3K14(-):91bp before exon 12	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;20)(q21.31;p11.23)(chr17:g.43345217::chr20:g.19463571)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	28	10	28
P-0056701-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39929766	42867533	Intron of ERG(-):18Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1028:TMPRSS2_c.39+17820:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2937767	NA	0	5	0	5
P-0056701-T01-IM6	SOMATIC	DPP6	SMO	7	7	128852146	154572557	Exon 12 of SMO(+)	Intron of DPP6(+):8Kb after exon 10	GRCh37	DUPLICATION	DPP6 (NM_130797) - SMO (NM_005631) rearrangement: c.509+7905:DPP6_c.2218:SMOdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DPP6:SMO}	25720411	NA	0	11	10	11
P-0056785-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117644150	117886108	Intron of ROS1(-):1Kb after exon 34	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5641+1345:ROS1_chr6:g.117886108del	PRECISE		MANUAL_OK	3to5	-	241958	NA	0	6	10	6
P-0056798-T02-IM6	SOMATIC	CDK8	CDK8	13	13	26904421	26975655	Intron of CDK8(+):7Kb before exon 2	Exon 12 of CDK8(+)	GRCh37	INVERSION	CDK8 (NM_001260) rearrangement: c.129-7283_c.1163inv	PRECISE		MANUAL_OK	5to5	-	71234	NA	0	54	10	65
P-0056800-T02-IM6	SOMATIC	SPEN	SPEN	1	1	16217714	16256775	Intron of SPEN(+):15Kb after exon 3	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) rearrangement: c.881+14541_c.4040dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	39061	NA	0	23	10	25
P-0056834-T01-IM6	SOMATIC	ARID2	ARID2	12	11	46205376	122584841	Intron of ARID2(+):42bp after exon 4	Intron of UBASH3B(+):58Kb after exon 1	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(11;12)(q24.1;q12)(chr11:g.122584841::chr12:g.46205376)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	18	10	19
P-0056834-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486007	113664214	Intron of NAB2(+):223bp before exon 3	Intron of TPCN1(+):318bp before exon 3	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.958-224:NAB2_chr12:g.113664214inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	56178207	NA	0	26	10	26
P-0056837-T01-IM6	SOMATIC	SPEN	SPEN	2	1	205830780	16200953	Intron of PARD3B(+):734bp after exon 3	Intron of SPEN(+):1Kb after exon 2	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;2)(p36.13;q33.3)(chr1:g.16200953::chr2:g.205830780)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	6	0	6
P-0056838-T01-IM6	SOMATIC	ASXL1	ASXL1	20	11	31023236	99782038	Exon 12 of ASXL1(+)	Intron of CNTN5(+):5Kb before exon 7	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) rearrangement: t(11;20)(q22.1;q11.21)(chr11:g.99782038::chr20:g.31023236)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	86	10	95
P-0056838-T01-IM6	SOMATIC	NPM1	RANBP17	5	5	170706349	170833503	Intron of RANBP17(+):13Kb after exon 25	Intron of NPM1(+):1Kb after exon 9	GRCh37	DUPLICATION	NPM1 (NM_002520) - RANBP17 (NM_022897) rearrangement: c.771+1096:NPM1_c.2943+13498:RANBP17dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NPM1:RANBP17}	127154	NA	0	13	0	13
P-0056863-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42848614	43299676	Intron of TMPRSS2(-):67bp before exon 8	Promoter of PRDM15(-):81Kb from tx start	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.795-67:TMPRSS2_chr21:g.43299676del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {PRDM15:TMPRSS2}	451062	NA	0	16	10	16
P-0056867-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	38621898	38641730	Intron of SPRED1(+):5Kb after exon 4	Intron of SPRED1(+):6bp after exon 6	GRCh37	DUPLICATION	SPRED1 (NM_152594) rearrangement: c.423+4888_c.684+6dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	19832	NA	0	57	10	60
P-0056867-T01-IM6	SOMATIC	EFCAB6	FANCA	22	16	44100147	89877547	Intron of EFCAB6(-):7Kb after exon 10	Intron of FANCA(-):68bp before exon 4	GRCh37	TRANSLOCATION	EFCAB6 (NM_022785) - FANCA (NM_000135) rearrangement: t(16;22)(q24.3;q13.2)(chr16:g.89877547::chr22:g.44100147)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EFCAB6:FANCA}	0	NA	0	5	0	5
P-0056867-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151836487	151838326	Intron of KMT2C(-):143bp before exon 57	Intron of KMT2C(-):1Kb before exon 56	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.14344-1450_c.14461-143del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1839	NA	0	11	10	10
P-0056869-T01-IM6	SOMATIC	EPHA7	EPHA7	6	6	93967213	125283749	Exon 12 of EPHA7(-)	Exon 1 of RNF217(+)	GRCh37	DELETION	EPHA7 (NM_004440) rearrangement: c.2139:EPHA7_chr6:g.125283749del	PRECISE		MANUAL_OK	3to5	-	31316536	NA	0	5	10	5
P-0056870-T01-IM6	SOMATIC	NCOA4	RET	10	10	43610337	51582404	Intron of RET(+):153bp after exon 11	Intron of TIMM23B(+):150Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.618+132:NCOA4_c.2136+153:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7972067	NA	0	62	10	64
P-0056896-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52483011	52719135	5-UTR of ZNF350(-):15Kb before coding start	Exon 7 of PPP2R1A(+)	GRCh37	DELETION	PPP2R1A (NM_014225) rearrangement: c.911:PPP2R1A_chr19:g.52483011del	PRECISE		MANUAL_OK	3to5	-	236124	NA	0	4	5	4
P-0056900-T01-IM6	SOMATIC	FLT4	FLT4	5	1	180030274	56069669	Exon 30 of FLT4(-)	IGR: 378Kb before MIR4422(+)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(1;5)(p32.3;q35.3)(chr1:g.56069669::chr5:g.180030274)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	16	0	16
P-0056904-T02-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11984813	11985664	Exon 3 of MAP2K4(+)	Intron of MAP2K4(+):817bp after exon 3	GRCh37	INVERSION	MAP2K4 (NM_003010) rearrangement: c.359_c.393+817inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	851	NA	0	39	10	47
P-0056939-T01-IM6	SOMATIC	ASXL2	STK40	2	1	26022167	36816949	Intron of ASXL2(-):86bp after exon 4	Intron of STK40(-):3Kb before exon 8	GRCh37	TRANSLOCATION	ASXL2 (NM_018263) - STK40 (NM_032017) rearrangement: t(1;2)(p34.3;p23.3)(chr1:g.36816949::chr2:g.26022167)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ASXL2:STK40}	0	NA	0	39	10	39
P-0056943-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39917013	42866635	Intron of ERG(-):31Kb after exon 3	Intron of TMPRSS2(-):130bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-130:TMPRSS2_c.39+30573:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2949622	NA	0	26	10	27
P-0056951-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151569151	151896468	Intron of PRKAG2(-):4Kb after exon 1	Exon 27 of KMT2C(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.4169:KMT2C_chr7:g.151569151inv	PRECISE		MANUAL_OK	3to3	-	327317	NA	0	95	10	94
P-0056952-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138537156	140493821	Intron of KIAA1549(-):141bp before exon 17	Intron of BRAF(-):286bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5248-141:KIAA1549_c.1140+287:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1956665	NA	0	25	10	26
P-0056955-T01-IM6	SOMATIC	NF1	NF1	17	17	29548811	29654728	Intron of NF1(+):56bp before exon 15	Exon 38 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1642-57_c.5480dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	105917	NA	0	6	0	6
P-0056956-T01-IM6	SOMATIC	POLD1	POLD1	22	19	30919430	50921187	Promoter of SEC14L6(-):1Kb from tx start	Exon 27 of POLD1(+)	GRCh37	TRANSLOCATION	POLD1 (NM_002691) rearrangement: t(19;22)(q13.33;q12.2)(chr19:g.50921187::chr22:g.30919430)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	36	10	39
P-0056956-T01-IM6	SOMATIC	CD79A	CD79A	22	19	49650697	42381449	IGR: 157Kb before C22orf34(-)	Exon 1 of CD79A(+)	GRCh37	TRANSLOCATION	CD79A (NM_001783) rearrangement: t(19;22)(q13.2;q13.33)(chr19:g.42381449::chr22:g.49650697)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	9	6
P-0056993-T01-IM6	SOMATIC	SPATA6	ELF3	1	1	48877922	201983042	Intron of SPATA6(-):662bp before exon 5	Exon 8 of ELF3(+)	GRCh37	INVERSION	SPATA6 (NM_019073) - ELF3 (NM_004433) rearrangement: c.281-662:SPATA6_c.891:ELF3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SPATA6:ELF3}	153105120	NA	0	5	9	6
P-0057005-T01-IM6	SOMATIC	FGFR2	KIAA1598	10	10	118710760	123239901	Intron of KIAA1598(-):659bp after exon 6	Intron of FGFR2(-):366bp before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) - KIAA1598 (NM_001127211) fusion: c.2302-366:FGFR2_c.534+660:KIAA1598del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:KIAA1598}	4529141	NA	0	262	0	275
P-0057010-T01-IM6	SOMATIC	ALK	ALK	9	2	8209607	29448346	IGR: 105Kb before PTPRD(-)	Exon 19 of ALK(-)	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(2;9)(p23.2;p24.1)(chr2:g.29448346::chr9:g.8209607)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	164	10	164
P-0057013-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162683626	162832223	Exon 3 of PARK2(-)	Intron of PARK2(-):32Kb after exon 2	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.171+32119_c.343del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	148597	NA	0	36	10	37
P-0057018-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56173488	56177959	Intron of MAP3K1(+):1Kb before exon 11	Exon 14 of MAP3K1(+)	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.1966-1319_c.2932del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4471	NA	0	24	10	27
P-0057021-T01-IM6	SOMATIC	PTPRT	PTPRT	20	13	40748688	106968685	Intron of PTPRT(-):77bp before exon 21	IGR: 60Kb before LINC00460(+)	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(13;20)(q33.2;q12)(chr13:g.106968685::chr20:g.40748688)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	6	0	6
P-0057026-T01-IM6	SOMATIC	BTK	BTK	X	X	87960713	100610770	IGR: 42Kb before CPXCR1(+)	Intron of BTK(-):269bp after exon 15	GRCh37	DELETION	BTK (NM_000061) rearrangement: c.1566+270:BTK_chrX:g.87960713del	PRECISE		MANUAL_OK	3to5	-	12650057	NA	0	13	10	13
P-0057027-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63486594	63529976	IGR: 38Kb before AXIN2(-)	Intron of AXIN2(-):53bp after exon 10	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.2405+54:AXIN2_chr17:g.63486594inv	PRECISE		MANUAL_OK	5to5	-	43382	NA	0	7	10	11
P-0057045-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	122881463	123242134	IGR: 271Kb before WDR11(+)	Intron of FGFR2(-):1Kb after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2301+1078:FGFR2_chr10:g.122881463del	IMPPRECISE		MANUAL_OK	3to5	-	360671	NA	0	42	0	43
P-0057048-T01-IM6	SOMATIC	FOXP1	FOXP1	8	3	26183020	71090364	Intron of PPP2R2A(+):13Kb before exon 3	Intron of FOXP1(-):114bp after exon 7	GRCh37	TRANSLOCATION	FOXP1 (NM_001244814) rearrangement: t(3;8)(p13;p21.2)(chr3:g.71090364::chr8:g.26183020)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FOXP1:PPP2R2A}	0	NA	0	20	10	20
P-0057103-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31358791	31384490	5-UTR of DNMT3B(+):9Kb before coding start	Intron of DNMT3B(+):105bp before exon 13	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.1298-106:DNMT3B_chr20:g.31358791del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	25699	NA	0	5	10	6
P-0057103-T01-IM6	SOMATIC	WWTR1	WWTR1	4	3	139694127	149238661	IGR: 243Kb before CCRN4L(+)	Exon 7 of WWTR1(-)	GRCh37	TRANSLOCATION	WWTR1 (NM_001168280) rearrangement: t(3;4)(q25.1;q31.1)(chr3:g.149238661::chr4:g.139694127)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0057103-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176721871	176770618	Exon 23 of NSD1(+)	Intron of LMAN2(-):5Kb before exon 3	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.7502:NSD1_chr5:g.176770618del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	48747	NA	0	18	10	20
P-0057114-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120462085	120466442	Exon 31 of NOTCH2(-)	Exon 26 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.4677_c.5631inv	PRECISE		MANUAL_OK	3to3	-	4357	NA	0	53	10	53
P-0057114-T01-IM6	SOMATIC	POLD1	POLD1	19	1	50918915	7395199	Intron of POLD1(+):65bp before exon 22	Intron of CAMTA1(+):86Kb after exon 5	GRCh37	TRANSLOCATION	POLD1 (NM_002691) rearrangement: t(1;19)(p36.23;q13.33)(chr1:g.7395199::chr19:g.50918915)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	2	5	0	9
P-0057124-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39573230	39750634	Intron of PIK3C3(+):3bp before exon 7	IGR: 16Kb before LINC00907(+)	GRCh37	INVERSION	PIK3C3 (NM_002647) rearrangement: c.715-4:PIK3C3_chr18:g.39750634inv	PRECISE		MANUAL_OK	5to5	-	177404	NA	0	21	10	21
P-0057126-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39988093	42877786	3-UTR of ERG(-):46Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2091:TMPRSS2_c.-149-31224:ERGdel	PRECISE		MANUAL_OK	3to5	-	2889693	NA	0	80	10	88
P-0057129-T01-IM6	SOMATIC	EWSR1	DDIT3	22	12	29683979	57911798	Intron of EWSR1(+):615bp before exon 9	5-UTR of DDIT3(-):1Kb before coding start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - DDIT3 (NM_001195054) rearrangement: t(12;22)(q13.3;q12.2)(chr12:g.57911798::chr22:g.29683979)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:DDIT3}	0	NA	0	6	9	6
P-0057140-T01-IM6	SOMATIC	MET	CNTNAP2	7	7	116414116	147521398	Intron of MET(+):818bp before exon 15	Intron of CNTNAP2(+):79Kb before exon 14	GRCh37	DELETION	MET (NM_000245) - CNTNAP2 (NM_014141) rearrangement: c.3029-819:MET_c.2099-79259:CNTNAP2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MET:CNTNAP2}	31107282	NA	0	22	10	24
P-0057144-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27023905	27035121	Exon 1 of ARID1A(+)	Intron of ARID1A(+):11Kb after exon 1	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1011_c.1137+11090del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11216	NA	0	3	10	3
P-0057162-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55141273	61062283	Intron of PDGFRA(+):133bp after exon 12	IGR: 1Mb before LPHN3(+)	GRCh37	INVERSION	PDGFRA (NM_006206) rearrangement: c.1786+133:PDGFRA_chr4:g.61062283inv	PRECISE		MANUAL_OK	3to3	-	5921010	NA	0	3	8	3
P-0057162-T01-IM6	SOMATIC	HIST1H3E	HIST1H3E	6	6	26175455	26225628	IGR: 9Kb before HIST1H2BE(+)	Exon 1 of HIST1H3E(+)	GRCh37	DELETION	HIST1H3E (NM_003532) rearrangement: c.246:HIST1H3E_chr6:g.26175455del	PRECISE		MANUAL_OK	3to5	-	50173	NA	0	7	6	7
P-0057167-T01-IM6	SOMATIC	EZR	ROS1	6	6	117646567	159191788	Intron of ROS1(-):819bp after exon 33	Intron of EZR(-):7bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+8:EZR_c.5557+820:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41545221	NA	0	4	9	4
P-0057178-T01-IM6	SOMATIC	PAK1	FBXO33	14	11	39887684	77051566	Intron of FBXO33(-):13Kb after exon 1	Intron of PAK1(-):124bp after exon 11	GRCh37	TRANSLOCATION	PAK1 (NM_002576) - FBXO33 (NM_203301) rearrangement: t(11;14)(q13.5;q21.1)(chr11:g.77051566::chr14:g.39887684)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PAK1:FBXO33}	0	NA	0	6	10	6
P-0057181-T01-IM6	SOMATIC	RB1	RB1	13	13	48941724	48951326	Exon 10 of RB1(+)	Intron of RB1(+):156bp after exon 13	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1034_c.1332+156dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9602	NA	0	6	10	6
P-0057197-T01-IM6	SOMATIC	FYN	FYN	12	6	13206754	112029271	Intron of KIAA1467(+):2Kb before exon 2	Intron of FYN(-):48bp before exon 3	GRCh37	TRANSLOCATION	FYN (NM_153047) rearrangement: t(6;12)(q21;p13.1)(chr6:g.112029271::chr12:g.13206754)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	23	10	32
P-0057197-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55186993	55222990	Intron of EGFR(+):23Kb before exon 2	Intron of EGFR(+):532bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-22986_c.890-533del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	35997	NA	0	255	10	258
P-0057209-T01-IM6	SOMATIC	JAK3	FAM129C	19	19	17647745	17946723	Intron of FAM129C(+):439bp before exon 6	Intron of JAK3(-):9bp after exon 14	GRCh37	INVERSION	JAK3 (NM_000215) - FAM129C (NM_173544) rearrangement: c.1914+10:JAK3_c.521-440:FAM129Cinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {JAK3:FAM129C}	298978	NA	0	29	10	40
P-0057228-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	170001257	170002345	Intron of PRKCI(+):991bp before exon 12	Exon 12 of PRKCI(+)	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.1068-992_c.1164del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1088	NA	0	2	8	2
P-0057229-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	120462056	120487142	Exon 31 of NOTCH2(-)	Intron of NOTCH2(-):3Kb before exon 18	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.2753-2765_c.5660del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	25086	NA	0	32	10	34
P-0057229-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118369185	118378519	Exon 22 of KMT2A(+)	Intron of KMT2A(+):195bp after exon 28	GRCh37	DUPLICATION	KMT2A (NM_001197104) rearrangement: c.5903_c.10835+195dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9334	NA	0	13	10	14
P-0057229-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148507450	148547352	Exon 17 of EZH2(-)	5-UTR of EZH2(-):43Kb before coding start	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.2004:EZH2_chr7:g.148547352del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	39902	NA	0	6	10	6
P-0057230-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875044	42872796	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449): c.56-2680:TMPRSS2_c.40-57500:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997752	NA	0	5	9	5
P-0057270-T01-IM6	SOMATIC	FGFR2	FGFR2	12	10	11728978	123241739	IGR: 28Kb before LINC01252(+)	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;12)(q26.13;p13.2)(chr10:g.123241739::chr12:g.11728978)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	31
P-0057272-T01-IM6	SOMATIC	DOT1L	DOT1L	19	9	2225328	71859852	Intron of DOT1L(+):58bp before exon 26	Intron of TJP2(+):2Kb before exon 18	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(9;19)(q21.11;p13.3)(chr9:g.71859852::chr19:g.2225328)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	62	10	70
P-0057274-T01-IM6	SOMATIC	MRPS9	SOX9	17	2	70120375	105709278	Exon 3 of SOX9(+)	Intron of MRPS9(+):251bp after exon 8	GRCh37	TRANSLOCATION	MRPS9 (NM_182640) - SOX9 (NM_000346) rearrangement: t(2;17)(q12.1;q24.3)(chr2:g.105709278::chr17:g.70120375)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MRPS9:SOX9}	0	NA	0	105	10	117
P-0057275-T01-IM6	SOMATIC	RAD51	RAD51	15	15	41001183	41001965	Intron of RAD51(+):39bp before exon 5	Intron of RAD51(+):651bp after exon 5	GRCh37	INVERSION	RAD51 (NM_002875) rearrangement: c.344-40_c.435+651inv	PRECISE		MANUAL_OK	5to5	-	782	NA	0	25	10	26
P-0057277-T01-IM6	SOMATIC	FGFR2	SRRT	10	7	123242651	100475766	Intron of FGFR2(-):560bp after exon 17	Intron of SRRT(+):2Kb after exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - SRRT (NM_015908) fusion: t(7;10)(q22.1;q26.13)(chr7:g.100475766::chr10:g.123242651)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FGFR2:SRRT}	0	NA	0	59	10	65
P-0042701-T03-IM6	SOMATIC	NF1	NF1	17	17	29490476	29583029	Intron of NF1(+):82bp after exon 4	Intron of NF1(+):2Kb before exon 32	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.479+82_c.4174-2333del	PRECISE		MANUAL_OK	3to5	Deletion of 27 exons : out of frame	92553	NA	0	67	10	68
P-0046580-T03-IM6	SOMATIC	ATF6	NUF2	1	1	161844547	163325067	Intron of ATF6(+):11Kb after exon 14	Intron of NUF2(+):57bp before exon 14	GRCh37	DELETION	ATF6 (NM_007348) - NUF2 (NM_031423) rearrangement: c.1719+11445:ATF6_c.1261-58:NUF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ATF6:NUF2}	1480520	NA	0	29	10	29
P-0046580-T03-IM6	SOMATIC	FGFR3	TACC3	4	4	1741430	1808716	Exon 11 of TACC3(+)	Intron of FGFR3(+):55bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+55:FGFR3_c.1943:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67286	NA	0	11	10	11
P-0046757-T04-IM6	SOMATIC	DNMT1	DNMT1	19	19	10244496	18537515	Intron of DNMT1(-):119bp before exon 40	Intron of SSBP4(+):645bp before exon 2	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4817-119:DNMT1_chr19:g.18537515del	PRECISE		MANUAL_OK	3to5	-	8293019	NA	0	63	10	68
P-0055667-T04-IM6	SOMATIC	PICALM	ALK	11	2	85681391	29446386	Intron of PICALM(-):4Kb after exon 19	Exon 20 of ALK(-)	GRCh37	TRANSLOCATION	PICALM (NM_007166) - ALK (NM_004304) fusion: t(2;11)(p23.2;q14.2)(chr2:g.29446386::chr11:g.85681391)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PICALM:ALK}	0	NA	0	149	10	163
P-0056812-T02-IM6	SOMATIC	MOB3B	TEK	9	9	27168587	27388069	Exon 3 of TEK(+)	Intron of MOB3B(-):29Kb before exon 3	GRCh37	INVERSION	MOB3B (NM_024761) - TEK (NM_000459) rearrangement: c.419-28835:MOB3B_c.459:TEKinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MOB3B:TEK}	219482	NA	0	18	10	24
P-0057262-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61729474	61774697	Intron of XPO1(-):29bp before exon 5	IGR: 70Kb before XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.302-29:XPO1_chr2:g.61774697del	PRECISE		MANUAL_OK	3to5	-	45223	NA	0	6	10	12
P-0057262-T01-IM6	SOMATIC	RAC1	RAC1	9	7	118082958	6431625	5-UTR of DEC1(+):56Kb before coding start	Exon 3 of RAC1(+)	GRCh37	TRANSLOCATION	RAC1 (NM_018890) rearrangement: t(7;9)(p22.1;q33.1)(chr7:g.6431625::chr9:g.118082958)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	47	10	61
P-0057263-T01-IM6	SOMATIC	BTK	BTK	X	X	100629523	111729311	Exon 3 of BTK(-)	IGR: 145Kb before LHFPL1(-)	GRCh37	INVERSION	BTK (NM_000061) rearrangement: c.240+1:BTK_chrX:g.111729311inv	PRECISE		MANUAL_OK	5to5	-	11099788	NA	0	39	10	45
P-0057266-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	29195100	40112996	Intron of DUSP4(-):172bp before exon 4	IGR: 102Kb before C8orf4(+)	GRCh37	INVERSION	DUSP4 (NM_001394) rearrangement: c.800-172:DUSP4_chr8:g.40112996inv	PRECISE		MANUAL_OK	3to3	-	10917896	NA	0	10	10	9
P-0057288-T01-IM6	SOMATIC	SPOP	SPOP	17	17	47679264	79004608	Exon 9 of SPOP(-)	3-UTR of BAIAP2-AS1(-):4Kb after coding stop	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: c.943:SPOP_chr17:g.79004608inv	PRECISE		MANUAL_OK	3to3	-	31325344	NA	0	16	10	16
P-0057341-T01-IM6	SOMATIC	CDK12	SPON1	17	11	37682247	14149386	Exon 13 of CDK12(+)	Intron of SPON1(+):8Kb before exon 6	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - SPON1 (NM_006108) rearrangement: t(11;17)(p15.2;q12)(chr11:g.14149386::chr17:g.37682247)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDK12:SPON1}	0	NA	0	19	10	19
P-0057341-T01-IM6	SOMATIC	CDC27	RARA	17	17	38506060	45254151	Exon 4 of RARA(+)	Intron of CDC27(-):5Kb after exon 2	GRCh37	INVERSION	CDC27 (NM_001114091) - RARA (NM_000964) rearrangement: c.104-4721:CDC27_c.352:RARAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CDC27:RARA}	6748091	NA	0	77	10	93
P-0057344-T01-IM6	SOMATIC	TP53	TP53	17	5	7577351	144882386	Intron of TP53(-):147bp after exon 7	IGR: 254Kb before PRELID2(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(5;17)(q32;p13.1)(chr5:g.144882386::chr17:g.7577351)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	31
P-0057346-T01-IM6	SOMATIC	DOT1L	DOT1L	19	3	2191319	49588929	Intron of DOT1L(+):80bp after exon 5	3-UTR of BSN-AS2(-):3Kb after coding stop	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(3;19)(p21.31;p13.3)(chr3:g.49588929::chr19:g.2191319)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0057348-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	9407228	10600493	Exon 5 of ZNF699(-)	Exon 4 of KEAP1(-)	GRCh37	INVERSION	KEAP1 (NM_203500) rearrangement: c.1362:KEAP1_chr19:g.9407228inv	PRECISE		MANUAL_OK	3to3	-	1193265	NA	0	119	10	117
P-0057349-T01-IM6	SOMATIC	SDHA	SDHA	5	5	218528	129657516	Exon 1 of SDHA(+)	IGR: 417Kb before CHSY3(+)	GRCh37	DELETION	SDHA (NM_004168) rearrangement: c.58:SDHA_chr5:g.129657516del	PRECISE		MANUAL_OK	3to5	-	129438988	NA	3	149	10	181
P-0024335-T04-IM6	SOMATIC	CRKL	CRKL	22	6	21280428	148822191	Intron of CRKL(+):8Kb before exon 2	Intron of SASH1(+):13Kb before exon 9	GRCh37	TRANSLOCATION	CRKL (NM_005207) rearrangement: t(6;22)(q24.3;q11.21)(chr6:g.148822191::chr22:g.21280428)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	44	10	45
P-0031560-T07-IM6	SOMATIC	FGFR4	NSD1	5	5	176523632	176568265	Exon 16 of FGFR4(+)	Intron of NSD1(+):5Kb after exon 2	GRCh37	INVERSION	FGFR4 (NM_213647) - NSD1 (NM_022455) rearrangement: c.2043:FGFR4_c.927+5234:NSD1inv	IMPPRECISE		MANUAL_OK	5to5	-	44633	NA	0	42	0	54
P-0042766-T03-IM6	SOMATIC	CDK12	CDK12	17	17	37665974	52590815	Exon 7 of CDK12(+)	IGR: 387Kb before TOM1L1(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.2626:CDK12_chr17:g.52590815del	IMPPRECISE		MANUAL_OK	3to5	-	14924841	NA	1	6	0	163
P-0055607-T02-IM6	SOMATIC	ALK	SOS1	2	2	29446585	39344711	Intron of ALK(-):191bp before exon 20	Intron of SOS1(-):3Kb after exon 1	GRCh37	INVERSION	ALK (NM_004304) - SOS1 (NM_005633) rearrangement: c.3173-191:ALK_c.87+2766:SOS1inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	9898126	NA	0	119	10	134
P-0034891-T02-IM6	SOMATIC	EPHA7	EPHA7	6	6	93967990	94626122	Exon 11 of EPHA7(-)	IGR: 209Kb before TSG1(+)	GRCh37	INVERSION	EPHA7 (NM_004440) rearrangement: c.1937:EPHA7_chr6:g.94626122inv	PRECISE		MANUAL_OK	5to5	-	658132	NA	0	10	10	10
P-0056414-T02-IM6	SOMATIC	APC	APC	5	5	112176277	112194773	Exon 16 of APC(+)	Promoter of SRP19(+):2Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4986:APC_chr5:g.112194773del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {APC:SRP19}	18496	NA	0	18	10	21
P-0057072-T02-IM6	SOMATIC	KIF5B	RET	10	10	32314848	43611106	Intron of KIF5B(-):3Kb after exon 15	Intron of RET(+):922bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2508:KIF5B_c.2136+922:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296258	NA	0	48	10	54
P-0057238-T02-IM6	SOMATIC	INHBA	INHBA	7	7	41738160	41739659	Intron of INHBA(-):1Kb after exon 2	Exon 2 of INHBA(-)	GRCh37	DELETION	INHBA (NM_002192) rearrangement: c.314_c.388+1425del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1499	NA	0	44	10	44
P-0057487-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178097436	178103295	Intron of NFE2L2(-):125bp before exon 4	Intron of NFE2L2(-):4Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-4296_c.403-125del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	5859	NA	0	15	10	15
P-0057488-T01-IM6	SOMATIC	PIK3C2G	GYS2	12	12	18715707	21711244	Exon 26 of PIK3C2G(+)	Exon 11 of GYS2(-)	GRCh37	INVERSION	PIK3C2G (NM_004570) - GYS2 (NM_021957) rearrangement: c.3538:PIK3C2G_c.1312:GYS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PIK3C2G:GYS2}	2995537	NA	0	31	10	31
P-0057508-T01-IM6	SOMATIC	EGFR	EGFR	7	2	55233043	10446064	Exon 15 of EGFR(+)	5-UTR of HPCAL1(+):114Kb before coding start	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(2;7)(p25.1;p11.2)(chr2:g.10446064::chr7:g.55233043)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EGFR:HPCAL1}	0	NA	0	6	10	6
P-0057509-T01-IM6	SOMATIC	GCN1L1	MSI1	12	12	120607397	120785340	Intron of GCN1L1(-):575bp after exon 15	Intron of MSI1(-):23bp before exon 12	GRCh37	DUPLICATION	GCN1L1 (NM_006836) - MSI1 (NM_002442) rearrangement: c.1519+576:GCN1L1_c.791-23:MSI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {GCN1L1:MSI1}	177943	NA	0	12	10	21
P-0057509-T01-IM6	SOMATIC	TSC2	TSC2	16	1	2104442	1935158	Intron of TSC2(+):1bp after exon 5	5-UTR of CFAP74(-):48Kb before coding start	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(1;16)(p36.33;p13.3)(chr1:g.1935158::chr16:g.2104442)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	17
P-0057511-T01-IM6	SOMATIC	KDM5C	KDM5C	X	15	53222442	27094323	Exon 26 of KDM5C(-)	IGR: 18Kb before GABRA5(+)	GRCh37	TRANSLOCATION	KDM5C (NM_004187) rearrangement: t(15;X)(q12;p11.22)(chr15:g.27094323::chrX:g.53222442)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	24	0	24
P-0057512-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55208588	55222466	Intron of EGFR(+):1Kb before exon 2	Intron of EGFR(+):621bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-1391_c.889+621del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	13878	NA	0	52	10	55
P-0057512-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268402	55272040	Intron of EGFR(+):296bp after exon 24	Intron of EGFR(+):908bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+296_c.3272-909del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3638	NA	0	129	0	3232
P-0021104-T02-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43753449	43769979	Intron of TP53BP1(-):4Kb before exon 12	Intron of TP53BP1(-):22bp before exon 8	GRCh37	DUPLICATION	TP53BP1 (NM_001141980) rearrangement: c.789-22_c.1390-4033dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	16530	NA	0	4	10	4
P-0021104-T02-IM6	SOMATIC	TCF3	TCF3	19	19	1632294	1716204	Intron of TCF3(-):36bp after exon 3	IGR: 37Kb before ONECUT3(+)	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.219+37:TCF3_chr19:g.1716204inv	PRECISE		MANUAL_OK	5to5	-	83910	NA	0	16	10	16
P-0021104-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872989	42866560	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):55bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449 rearrangement: c.127-55:TMPRSS2_c.40-55445:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2993571	NA	0	91	10	93
P-0037710-T02-IM6	SOMATIC	NOTCH2	NOTCH2	5	1	148798999	120465295	5-UTR of MIR143HG(+):13Kb before coding start	Exon 27 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;5)(p12;q32)(chr1:g.120465295::chr5:g.148798999)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MIR143HG:NOTCH2}	0	NA	0	18	10	17
P-0052021-T02-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89348527	89352169	Exon 9 of ANKRD11(-)	Intron of ANKRD11(-):112bp before exon 9	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.893-112_c.4423del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3642	NA	0	2	10	2
P-0052021-T02-IM6	SOMATIC	ICOSLG	ICOSLG	21	4	45655154	3087022	Exon 4 of ICOSLG(-)	Intron of HTT(+):2Kb before exon 2	GRCh37	TRANSLOCATION	ICOSLG (NM_015259) rearrangement: t(4;21)(p16.3;q22.3)(chr4:g.3087022::chr21:g.45655154)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	5	10	5
P-0057256-T02-IM6	SOMATIC	PPM1D	PPM1D	17	12	58734356	4098825	Intron of PPM1D(+):154bp after exon 5	IGR: 181Kb before PARP11(-)	GRCh37	TRANSLOCATION	PPM1D (NM_003620) rearrangement: t(12;17)(p13.32;q23.2)(chr12:g.4098825::chr17:g.58734356)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0057493-T01-IM6	SOMATIC	SPEN	SPEN	1	1	16198146	16200647	Intron of SPEN(+):1Kb before exon 2	Intron of SPEN(+):1Kb after exon 2	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.84-1165_c.404+1016del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2501	NA	0	3	6	3
P-0044229-T02-IM6	SOMATIC	PAK1	PAK1	11	9	77034415	68420965	Intron of PAK1(-):10bp before exon 15	IGR: 7Kb before LOC642236(-)	GRCh37	TRANSLOCATION	PAK1 (NM_002576) rearrangement: t(9;11)(q13;q13.5)(chr9:g.68420965::chr11:g.77034415)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	5	0	5
P-0047450-T02-IM6	SOMATIC	POLE	POLE	12	12	133220124	133291622	Exon 34 of POLE(-)	Exon 2 of PGAM5(+)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.4313:POLE_chr12:g.133291622del	PRECISE		MANUAL_OK	3to5	-	71498	NA	0	9	10	9
P-0047450-T02-IM6	SOMATIC	RPTOR	RPTOR	17	17	78935320	78937037	Intron of RPTOR(+):40bp after exon 31	Intron of RPTOR(+):180bp after exon 33	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.3692+40_c.3939+180del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1717	NA	0	19	10	20
P-0049792-T01-IM6	SOMATIC	MGA	PRMT1	19	15	50185521	42005523	Intron of PRMT1(+):5bp after exon 4	Exon 9 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) - PRMT1 (NM_001536) rearrangement: t(15;19)(q15.1;q13.33)(chr15:g.42005523::chr19:g.50185521)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MGA:PRMT1}	0	NA	0	6	10	7
P-0057369-T01-IM6	SOMATIC	SLX4	MGRN1	16	16	3644545	4738720	Exon 10 of SLX4(-)	Intron of MGRN1(+):76bp before exon 17	GRCh37	INVERSION	SLX4 (NM_032444) - MGRN1 (NM_015246) rearrangement: c.2069:SLX4_c.1619-77:MGRN1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SLX4:MGRN1}	1094175	NA	0	23	10	30
P-0057573-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	143712847	151879364	IGR: 12Kb before OR6B1(+)	Exon 36 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.5581:KMT2C_chr7:g.143712847del	PRECISE		MANUAL_OK	3to5	-	8166517	NA	0	31	10	46
P-0007687-T06-IM6	SOMATIC	NTRK1	NTRK1	1	1	156830871	218470640	Exon 1 of NTRK1(+)	Intron of RRP15(+):5Kb before exon 2	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.145:NTRK1_chr1:g.218470640inv	PRECISE		MANUAL_OK	5to5	-	61639769	NA	0	92	10	122
P-0007687-T06-IM6	SOMATIC	SMYD3	SMYD3	1	1	246078874	246142589	Exon 8 of SMYD3(-)	Intron of SMYD3(-):49Kb before exon 6	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.532-49350_c.771del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63715	NA	0	110	10	116
P-0034039-T02-IM6	SOMATIC	LMO1	LMO1	11	11	8251887	8282798	Exon 2 of LMO1(-)	Intron of LMO1(-):2Kb after exon 1	GRCh37	INVERSION	LMO1 (NM_002315) rearrangement: c.25+2087_c.190inv	PRECISE		MANUAL_OK	3to3	-	30911	NA	0	129	10	129
P-0057442-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831409	42866507	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):2bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-2:TMPRSS2_c.19-13865:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035098	NA	0	249	10	263
P-0057457-T01-IM6	SOMATIC	PTEN	C10orf76	10	10	89624356	103624930	Intron of PTEN(+):51bp after exon 1	Intron of C10orf76(-):15Kb before exon 25	GRCh37	INVERSION	PTEN (NM_000314) - C10orf76 (NM_024541) rearrangement: c.79+51:PTEN_c.1861-15281:C10orf76inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PTEN:C10orf76}	14000574	NA	0	14	0	22
P-0057463-T01-IM6	SOMATIC	NF2	NF2	22	22	30031680	30032861	Intron of NF2(+):1Kb before exon 2	Exon 2 of NF2(+)	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.115-1060_c.236del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1181	NA	0	11	10	11
P-0021896-T02-IM6	SOMATIC	PRKAR1A	PRKAR1A	17	17	66525130	66526059	Exon 9 of PRKAR1A(+)	Intron of PRKAR1A(+):1bp before exon 10	GRCh37	DELETION	PRKAR1A (NM_212471) rearrangement: c.889_c.892-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	929	NA	0	3	6	4
P-0023306-T02-IM6	SOMATIC	RAD51D	RAD51D	17	17	26566613	33434049	IGR: 8Kb before PPY2(+)	Intron of RAD51D(-):549bp before exon 3	GRCh37	DELETION	RAD51D (NM_133629) rearrangement: c.145-549:RAD51D_chr17:g.26566613del	PRECISE		MANUAL_OK	3to5	-	6867436	NA	0	27	10	27
P-0041118-T05-IM6	SOMATIC	CD74	ROS1	6	5	117647425	149782265	Exon 33 of ROS1(-)	Intron of CD74(-):77bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782265::chr6:g.117647425)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	8	0	8
P-0041118-T06-IM6	SOMATIC	CD74	ROS1	6	5	117647425	149782265	Exon 33 of ROS1(-)	Intron of CD74(-):77bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782265::chr6:g.117647425)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	NA	0	4	3	8
P-0046449-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55268956	55501188	Exon 25 of EGFR(+)	3-UTR of LANCL2(+):67Kb after coding stop	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.3022:EGFR_chr7:g.55501188inv	PRECISE		MANUAL_OK	3to3	-	232232	NA	0	16	10	16
P-0052295-T02-IM6	SOMATIC	PTCH1	PTCH1	9	9	98240352	115045675	Exon 9 of PTCH1(-)	Intron of PTBP3(-):7Kb before exon 4	GRCh37	INVERSION	PTCH1 (NM_000264) rearrangement: c.1332:PTCH1_chr9:g.115045675inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	16805323	NA	0	7	0	11
P-0052617-T02-IM6	SOMATIC	BCOR	BCOR	X	X	39917077	39932770	Intron of BCOR(-):503bp before exon 11	Exon 4 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.1829_c.4429-503del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15693	NA	0	19	10	19
P-0054569-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15300306	21587888	Intron of NOTCH3(-):67bp before exon 7	Intron of ZNF493(+):42bp before exon 2	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1037-67:NOTCH3_chr19:g.21587888del	PRECISE		MANUAL_OK	3to5	-	6287582	NA	0	87	10	149
P-0055378-T03-IM6	SOMATIC	BRCA1	BRCA1	17	17	41232067	41244514	Intron of BRCA1(-):2Kb after exon 12	Exon 10 of BRCA1(-)	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.3034_c.4357+2354inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12447	NA	0	60	10	68
P-0056280-T02-IM6	SOMATIC	FUBP1	FUBP1	1	1	78414983	78420938	Exon 19 of FUBP1(-)	Intron of FUBP1(-):1bp after exon 18	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.1780+2_c.1783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5955	NA	0	5	10	5
P-0056652-T02-IM6	SOMATIC	CD47	MET	7	3	116414583	107771293	Intron of MET(+):351bp before exon 15	Intron of CD47(-):476bp before exon 8	GRCh37	TRANSLOCATION	CD47 (NM_001777) - MET (NM_000245) fusion: t(3;7)(q13.12;q31.2)(chr3:g.107771293::chr7:g.116414583)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD47:MET}	0	NA	0	7	0	8
P-0057434-T02-IM6	SOMATIC	KDM5C	KDM5C	X	X	53221616	53222597	3-UTR of KDM5C(-):532bp after coding stop	Intron of KDM5C(-):21bp after exon 25	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.4317+22:KDM5C_chrX:g.53221616inv	PRECISE		MANUAL_OK	5to5	-	981	NA	0	126	10	160
P-0057447-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39858400	42874176	Intron of ERG(-):12Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4060:TMPRSS2_c.18+11887:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015776	NA	0	77	10	82
P-0057450-T01-IM6	SOMATIC	HSF5	RNF43	17	17	56435904	56534817	Exon 9 of RNF43(-)	Intron of HSF5(-):1Kb after exon 5	GRCh37	DELETION	HSF5 (NM_001080439) - RNF43 (NM_017763) rearrangement: c.1720+1312:HSF5_c.1233:RNF43del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HSF5:RNF43}	98913	NA	0	88	10	105
P-0057451-T01-IM6	SOMATIC	EZH1	EZH1	20	17	4136851	40858039	5-UTR of SMOX(+):19Kb before coding start	Exon 16 of EZH1(-)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(17;20)(q21.2;p13)(chr17:g.40858039::chr20:g.4136851)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	139	10	203
P-0057453-T01-IM6	SOMATIC	ERCC2	ERCC2	19	19	17064615	45871974	Intron of CPAMD8(-):2Kb before exon 20	Exon 5 of ERCC2(-)	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.274:ERCC2_chr19:g.17064615inv	PRECISE		MANUAL_OK	3to3	-	28807359	NA	0	46	10	46
P-0057456-T01-IM6	SOMATIC	CCND2	NDUFA9	12	12	4387984	4772925	Exon 3 of CCND2(+)	Intron of NDUFA9(+):1Kb after exon 6	GRCh37	DELETION	CCND2 (NM_001759) - NDUFA9 (NM_005002) rearrangement: c.470:CCND2_c.655+1124:NDUFA9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CCND2:NDUFA9}	384941	NA	0	169	10	450
P-0057527-T01-IM6	SOMATIC	NOTCH2	NOTCH2	16	1	80945124	120493502	IGR: 65Kb before CMC2(-)	Intron of NOTCH2(-):42bp before exon 15	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;16)(p12;q23.2)(chr1:g.120493502::chr16:g.80945124)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	59	10	59
P-0057528-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486788	57502421	Intron of NAB2(+):37bp after exon 4	3-UTR of STAT6(-):3Kb after coding stop	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1143+37:NAB2_chr12:c.-21-339:STAT6inv	PRECISE		MANUAL_OK	5to5	-	15633	NA	0	138	10	178
P-0057532-T01-IM6	SOMATIC	IGF1	IGF1	12	12	81836578	102869309	Intron of PPFIA2(-):3Kb before exon 6	Intron of IGF1(-):111bp after exon 2	GRCh37	INVERSION	IGF1 (NM_001111285) rearrangement: c.220+112:IGF1_chr12:g.81836578inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	21032731	NA	0	3	9	4
P-0057534-T01-IM6	SOMATIC	RFWD2	RFWD2	3	1	53397801	176104053	IGR: 80Kb before DCP1A(-)	Intron of RFWD2(-):92bp after exon 8	GRCh37	TRANSLOCATION	RFWD2 (NM_022457) rearrangement: t(1;3)(q25.2;p21.1)(chr1:g.176104053::chr3:g.53397801)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	6	0	6
P-0057535-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39867837	42875242	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4635:TMPRSS2_c.18+2450:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007405	NA	0	19	10	20
P-0057551-T01-IM6	SOMATIC	KATNA1	LATS1	6	6	149946519	150001720	Intron of KATNA1(-):2Kb before exon 4	Intron of LATS1(-):127bp before exon 5	GRCh37	DUPLICATION	KATNA1 (NM_007044) - LATS1 (NM_004690) rearrangement: c.321-2100:KATNA1_c.2011-127:LATS1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KATNA1:LATS1}	55201	NA	0	6	9	6
P-0057553-T01-IM6	SOMATIC	SESN2	SESN2	1	1	28599468	79020210	Intron of SESN2(+):164bp after exon 5	IGR: 63Kb before PTGFR(+)	GRCh37	INVERSION	SESN2 (NM_031459) rearrangement: c.750+164:SESN2_chr1:g.79020210inv	PRECISE		MANUAL_OK	3to3	-	50420742	NA	0	15	10	19
P-0057555-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3788096	3795100	Intron of CREBBP(-):463bp after exon 26	Intron of CREBBP(-):138bp before exon 23	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.3915-138_c.4394+464del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	7004	NA	0	2	7	3
P-0057557-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27088666	27093963	Exon 7 of ARID1A(+)	Intron of ARID1A(+):317bp before exon 11	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2275_c.2989-318del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5297	NA	0	4	10	4
P-0057598-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162614294	162864336	Intron of PARK2(-):8Kb after exon 4	Intron of PARK2(-):5bp after exon 2	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.171+6_c.534+7869del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	250042	NA	0	26	10	26
P-0057628-T01-IM6	SOMATIC	CDK8	MYO10	13	5	26828881	16676447	Exon 1 of CDK8(+)	Intron of MYO10(-):184bp before exon 34	GRCh37	TRANSLOCATION	CDK8 (NM_001260) - MYO10 (NM_012334) rearrangement: t(5;13)(p15.1;q12.13)(chr5:g.16676447::chr13:g.26828881)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CDK8:MYO10}	0	NA	0	314	10	317
P-0057632-T01-IM6	SOMATIC	KDM5A	KDM5A	12	12	419187	423179	Intron of KDM5A(-):57bp before exon 22	Intron of KDM5A(-):819bp before exon 20	GRCh37	DELETION	KDM5A (NM_001042603) rearrangement: c.2898-819_c.3217-57del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3992	NA	0	7	10	7
P-0057632-T01-IM6	SOMATIC	GREM1	GREM1	15	10	33023075	54692440	Exon 2 of GREM1(+)	IGR: 167Kb before MBL2(-)	GRCh37	TRANSLOCATION	GREM1 (NM_013372) rearrangement: t(10;15)(q21.1;q13.3)(chr10:g.54692440::chr15:g.33023075)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	14	10	14
P-0057635-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72557104	72845467	3-UTR of LINC01572(-):142Kb after coding stop	Intron of ZFHX3(-):8bp after exon 7	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3864+9:ZFHX3_chr16:g.72557104del	PRECISE		MANUAL_OK	3to5	-	288363	NA	0	8	10	8
P-0057653-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48601293	48604507	Intron of SMAD4(+):2Kb before exon 11	Intron of SMAD4(+):118bp before exon 12	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1309-1715_c.1448-119del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3214	NA	0	25	10	26
P-0057662-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117647129	117650153	Intron of ROS1(-):257bp after exon 33	Intron of ROS1(-):338bp after exon 32	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5366+339_c.5557+258inv	PRECISE		MANUAL_OK	3to3	-	3024	NA	0	2	6	1
P-0121604-T01-IM6	SOMATIC	BRD4	NOTCH3	19	19	15297469	15350154	Intron of NOTCH3(-):219bp after exon 12	Intron of BRD4(-):48bp after exon 17	GRCh37	DELETION	BRD4 (NM_058243) - NOTCH3 (NM_000435) rearrangement: c.3576+49:BRD4_c.1951+220:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BRD4:NOTCH3}	52685	NA	0	6	10	9
P-0057669-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688565	128673876	Exon 12 of EWSR1(+)	Intron of FLI1(+):1Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128673876::chr22:g.29688565)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	NA	0	89	10	105
P-0057670-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39859763	42879559	Intron of ERG(-):11Kb after exon 1	Intron of TMPRSS2(-):317bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+318:TMPRSS2_c.18+10524:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019796	NA	0	13	10	13
P-0024692-T02-IM6	SOMATIC	PREX2	PREX2	8	8	69063885	69069594	Intron of PREX2(+):5Kb after exon 34	Exon 35 of PREX2(+)	GRCh37	DELETION	PREX2 (NM_024870) rearrangement: c.4231+5298_c.4269del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5709	NA	0	13	10	13
P-0056693-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683723	128654385	Intron of EWSR1(+):600bp after exon 8	Intron of FLI1(+):2Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128654385::chr22:g.29683723)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	67	10	71
P-0057377-T02-IM6	SOMATIC	WHSC1	WHSC1	4	4	1959696	1962223	Exon 16 of WHSC1(+)	Intron of WHSC1(+):538bp before exon 18	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.2918_c.3256-539dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2527	NA	0	5	8	5
P-0057419-T02-IM6	SOMATIC	NF1	NF1	17	6	29554663	66423388	Intron of NF1(+):39bp after exon 20	IGR: 74Kb before SLC25A51P1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(6;17)(q12;q11.2)(chr6:g.66423388::chr17:g.29554663)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	33	10	38
P-0057556-T01-IM6	SOMATIC	PIK3CA	PIK3CA	3	3	178805729	178917485	IGR: 13Kb before LOC101928739(-)	Exon 3 of PIK3CA(+)	GRCh37	DELETION	PIK3CA (NM_006218) rearrangement: c.360:PIK3CA_chr3:g.178805729del	PRECISE		MANUAL_OK	3to5	-	111756	NA	0	4	6	5
P-0057601-T01-IM6	SOMATIC	RSPO3	TNFAIP3	6	6	127448640	138199647	Intron of RSPO3(+):8Kb after exon 1	Exon 7 of TNFAIP3(+)	GRCh37	DELETION	RSPO3 (NM_032784) - TNFAIP3 (NM_006290) rearrangement: c.97+8206:RSPO3_c.1065:TNFAIP3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RSPO3:TNFAIP3}	10751007	NA	0	417	10	545
P-0057601-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55231515	55232972	Exon 14 of EGFR(+)	Exon 15 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1721_c.1723-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1457	NA	0	4	7	4
P-0057603-T01-IM6	SOMATIC	NF1	NF1	17	17	25917426	29562646	Intron of KSR1(+):410bp before exon 7	Exon 28 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.3726:NF1_chr17:g.25917426inv	PRECISE		MANUAL_OK	5to5	-	3645220	NA	0	10	10	11
P-0057603-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39620057	39629710	Intron of PIK3C3(+):583bp before exon 19	Intron of PIK3C3(+):141bp after exon 21	GRCh37	DUPLICATION	PIK3C3 (NM_002647) rearrangement: c.2039-584_c.2263+141dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	9653	NA	0	23	10	23
P-0057603-T01-IM6	SOMATIC	RRAS	BCL2L12	19	19	50139895	50175813	Exon 4 of RRAS(-)	Intron of BCL2L12(+):1Kb before exon 4	GRCh37	INVERSION	RRAS (NM_006270) - BCL2L12 (NM_138639) rearrangement: c.434:RRAS_c.955-1142:BCL2L12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RRAS:BCL2L12}	35918	NA	0	140	10	200
P-0057608-T01-IM6	SOMATIC	NF1	NF1	17	17	29663378	29674068	Exon 41 of NF1(+)	Intron of NF1(+):2Kb before exon 49	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.6034_c.7190-2070dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10690	NA	0	49	10	77
P-0057611-T01-IM6	SOMATIC	TP53	TP53	17	17	7573323	7576439	Intron of TP53(-):315bp before exon 11	Intron of TP53(-):413bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+414_c.1101-315del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3116	NA	0	3	10	4
P-0057613-T01-IM6	SOMATIC	GUCY1A2	FGF19	11	11	69515714	106567065	Intron of FGF19(-):1Kb before exon 3	Intron of GUCY1A2(-):9Kb before exon 8	GRCh37	DELETION	GUCY1A2 (NM_000855) - FGF19 (NM_005117) rearrangement: c.1992-8583:GUCY1A2_c.337-1370:FGF19del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {GUCY1A2:FGF19}	37051351	NA	0	5	0	9
P-0057614-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111534152	111883171	Intron of ACOXL(+):8Kb after exon 2	Intron of BCL2L11(+):1Kb after exon 2	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.75+8111:ACOXL_c.394+1455:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ACOXL:BCL2L11}	349019	NA	0	5	5	5
P-0057719-T01-IM6	SOMATIC	RFWD2	RFWD2	6	1	155087557	175996708	Intron of SCAF8(+):8Kb before exon 4	Exon 15 of RFWD2(-)	GRCh37	TRANSLOCATION	RFWD2 (NM_022457) rearrangement: t(1;6)(q25.1;q25.2)(chr1:g.175996708::chr6:g.155087557)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	21	10	20
P-0057725-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27056155	27191159	Exon 2 of ARID1A(+)	Promoter of SFN(+):2Kb from tx start	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1151:ARID1A_chr1:g.27191159del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:SFN}	135004	NA	0	5	10	5
P-0057725-T01-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	66701390	185165559	IGR: 272Kb before LRIG1(-)	Intron of MAP3K13(+):17bp before exon 5	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.852-18:MAP3K13_chr3:g.66701390del	PRECISE		MANUAL_OK	3to5	-	118464169	NA	0	19	10	19
P-0057726-T01-IM6	SOMATIC	BIRC3	BIRC3	11	5	102201988	150268435	Intron of BIRC3(+):16bp after exon 7	IGR: 6Kb before ZNF300(-)	GRCh37	TRANSLOCATION	BIRC3 (NM_182962) rearrangement: t(5;11)(q33.1;q22.2)(chr5:g.150268435::chr11:g.102201988)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	27
P-0057731-T01-IM6	SOMATIC	FOXO1	FOXO1	13	13	41134031	41138307	Exon 2 of FOXO1(-)	Intron of FOXO1(-):3Kb before exon 2	GRCh37	DELETION	FOXO1 (NM_002015) rearrangement: c.631-3310_c.1597del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4276	NA	0	95	10	102
P-0057731-T01-IM6	SOMATIC	ENOSF1	YES1	18	18	706828	724775	Intron of ENOSF1(-):250bp before exon 2	Intron of YES1(-):143bp before exon 12	GRCh37	DUPLICATION	ENOSF1 (NM_017512) - YES1 (NM_005433) rearrangement: c.85-250:ENOSF1_c.1424-143:YES1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ENOSF1:YES1}	17947	NA	0	3	9	3
P-0057731-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151850302	151853082	Intron of KMT2C(-):263bp before exon 49	Exon 46 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.11873_c.12277-263del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2780	NA	0	53	10	56
P-0057735-T01-IM6	SOMATIC	CCDC6	RET	10	10	43611887	61665755	Intron of RET(+):144bp before exon 12	Intron of CCDC6(-):124bp after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+125:CCDC6_c.2137-145:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18053868	NA	0	60	10	79
P-0057742-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2073082	2216750	3-UTR of MOB3A(-):311bp after coding stop	Exon 20 of DOT1L(+)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.2394:DOT1L_chr19:g.2073082del	PRECISE		MANUAL_OK	3to5	-	143668	NA	0	33	10	33
P-0057743-T01-IM6	SOMATIC	RAD21	RAD21	8	8	117866604	118086446	Exon 9 of RAD21(-)	5-UTR of SLC30A8(+):73Kb before coding start	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.1041:RAD21_chr8:g.118086446del	PRECISE		MANUAL_OK	3to5	-	219842	NA	0	11	9	11
P-0057746-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123241998	123996508	Intron of FGFR2(-):1Kb after exon 17	Intron of TACC2(+):401bp before exon 14	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2301+1214:FGFR2_c.8128-402:TACC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:TACC2}	754510	NA	0	37	10	41
P-0057757-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39826159	42871050	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):934bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-934:TMPRSS2_c.19-8615:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3044891	NA	0	11	10	12
P-0057758-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	59092673	67200976	IGR: 39Kb before OR5AN1(+)	Intron of RPS6KB2(+):58bp after exon 10	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.906+58:RPS6KB2_chr11:g.59092673inv	PRECISE		MANUAL_OK	3to3	-	8108303	NA	0	397	10	396
P-0057766-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683237	128652221	Intron of EWSR1(+):114bp after exon 8	Intron of FLI1(+):303bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128652221::chr22:g.29683237)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	7	10	7
P-0057767-T01-IM6	SOMATIC	LRFN2	TAP1	6	6	32821499	40397687	Exon 1 of TAP1(-)	Intron of LRFN2(-):2Kb after exon 2	GRCh37	DELETION	LRFN2 (NM_020737) - TAP1 (NM_000593) rearrangement: c.1400+1766:LRFN2_c.95:TAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LRFN2:TAP1}	7576188	NA	0	68	10	70
P-0037474-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2121556	2131830	Exon 18 of TSC2(+)	Intron of TSC2(+):31bp after exon 31	GRCh37	DUPLICATION	TSC2 (NM_000548) Rearrangement : c.1885_c.3814+31dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10274	NA	0	186	10	208
P-0057452-T01-IM6	SOMATIC	WT1	WT1	11	11	32434363	32456536	Intron of WT1(-):4Kb after exon 5	Exon 1 of WT1(-)	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.356_c.1001+3673del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22173	NA	0	8	10	8
P-0057760-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39872881	42871840	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449 rearrangement: c.56-1724:TMPRSS2_chr21:c.40-55337del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2998959	NA	0	100	10	102
P-0057760-T01-IM6	SOMATIC	RYBP	RYBP	3	3	72427728	72623084	Exon 4 of RYBP(-)	IGR: 175Kb before SHQ1(-)	GRCh37	DELETION	RYBP (NM_012234) rearrangement: c.465:RYBP_chr3:g.72623084del	PRECISE		MANUAL_OK	3to5	-	195356	NA	0	103	10	106
P-0057762-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180055934	180074235	Exon 8 of FLT4(-)	Intron of FLT4(-):2Kb after exon 1	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.58+2253_c.1051del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18301	NA	0	5	9	6
P-0007705-T02-IM6	SOMATIC	EML4	ALK	2	2	29447417	42528485	Intron of ALK(-):909bp after exon 19	Exon 13 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1594:EML4_c.3172+910:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13081068	NA	0	87	10	77
P-0057746-T02-IM6	SOMATIC	FGFR2	TACC2	10	10	123241998	123996508	Intron of FGFR2(-):1Kb after exon 17	Intron of TACC2(+):401bp before exon 14	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2301+1214:FGFR2_c.8128-402:TACC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:TACC2}	754510	NA	0	9	10	9
P-0057746-T02-IM6	SOMATIC	PRKD1	PRKD1	14	14	30103267	30103792	Intron of PRKD1(-):356bp after exon 8	Intron of PRKD1(-):45bp before exon 8	GRCh37	INVERSION	PRKD1 (NM_002742) rearrangement: c.1191-45_c.1314+357inv	PRECISE		MANUAL_OK	3to3	-	525	NA	0	10	10	10
P-0057880-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268281	55271092	Intron of EGFR(+):175bp after exon 24	Intron of EGFR(+):774bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+175_c.3271+774del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2811	NA	0	210	10	238
P-0057880-T01-IM6	SOMATIC	EGFR	LANCL2	7	7	55268871	55450796	Intron of EGFR(+):9bp before exon 25	Intron of LANCL2(+):9Kb before exon 2	GRCh37	DELETION	EGFR (NM_005228) - LANCL2 (NM_018697) fusion: c.2947-10:EGFR_c.205-8690:LANCL2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EGFR:LANCL2}	181925	NA	0	4	0	4
P-0057892-T01-IM6	SOMATIC	NCOA3	EYA2	20	20	45812671	46256621	Intron of EYA2(+):632bp after exon 13	Intron of NCOA3(+):44bp before exon 8	GRCh37	DUPLICATION	NCOA3 (NM_181659) - EYA2 (NM_005244) rearrangement: c.722-45:NCOA3_c.1536+632:EYA2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NCOA3:EYA2}	443950	NA	0	10	9	10
P-0057895-T01-IM6	SOMATIC	CD74	CD74	5	5	149785692	149796111	Intron of CD74(-):129bp after exon 4	IGR: 15Kb before CD74(-)	GRCh37	DUPLICATION	CD74 (NM_001025159) rearrangement: c.441+130:CD74_chr5:g.149796111dup	PRECISE		MANUAL_OK	5to3	-	10419	NA	0	33	10	34
P-0057896-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27088126	27095868	Intron of ARID1A(+):162bp after exon 6	Intron of ARID1A(+):1Kb after exon 11	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2251+162_c.3198+1378del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	7742	NA	0	13	0	12
P-0057894-T01-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	50480092	50515786	Exon 2 of SMARCD1(+)	Promoter of COX14(+):10Kb from tx start	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement: c.326:SMARCD1_chr12:g.50515786del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCD1:COX14}	35694	NA	0	12	10	13
P-0057240-T02-IM6	SOMATIC	KEAP1	KRI1	19	19	10610304	10670014	Exon 2 of KEAP1(-)	Intron of KRI1(-):20bp after exon 12	GRCh37	DUPLICATION	KEAP1 (NM_203500) - KRI1 (NM_023008) rearrangement: c.406:KEAP1_c.1212+21:KRI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KEAP1:KRI1}	59710	NA	0	33	10	49
P-0057770-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487467	57493547	Intron of NAB2(+):86bp after exon 6	Intron of STAT6(-):2bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+86:NAB2_c.1744+3:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	6080	NA	0	27	10	27
P-0057776-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	33428037	33435735	Exon 7 of RAD51D(-)	Intron of RAD51D(-):2Kb before exon 3	GRCh37	DELETION	RAD51D (NM_133629) rearrangement: c.145-2235_c.586del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7698	NA	0	3	4	3
P-0015370-T03-IM6	SOMATIC	TP53	TP53	17	17	7574462	7577951	Intron of TP53(-):429bp before exon 10	Intron of TP53(-):225bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+226_c.994-429del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	3489	NA	0	8	4	11
P-0016733-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39823695	42873910	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3794:TMPRSS2_c.19-6151:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3050215	NA	0	64	10	67
P-0021007-T02-IM6	SOMATIC	PRKCI	PRKCI	3	3	169993100	172116321	Intron of PRKCI(+):25bp after exon 8	3-UTR of FNDC3B(+):286Kb after coding stop	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.705+25:PRKCI_chr3:g.172116321del	PRECISE		MANUAL_OK	3to5	-	2123221	NA	0	56	10	62
P-0049711-T02-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21803196	22008880	Intron of MTAP(+):416bp after exon 1	Exon 1 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.73:CDKN2B_chr9:g.21803196del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	205684	NA	0	27	10	28
P-0050150-T02-IM6	SOMATIC	KDM5A	KDM5A	12	12	476841	493271	Intron of KDM5A(-):2Kb before exon 4	Exon 3 of KDM5A(-)	GRCh37	DUPLICATION	KDM5A (NM_001042603) rearrangement: c.292_c.367-1571dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	16430	NA	0	33	10	34
P-0054563-T02-IM6	SOMATIC	DIS3	DIS3	13	1	73352381	208901063	Exon 3 of DIS3(-)	IGR: 701Kb before MIR205HG(+)	GRCh37	TRANSLOCATION	DIS3 (NM_014953) rearrangement: t(1;13)(q32.2;q22.1)(chr1:g.208901063::chr13:g.73352381)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	39
P-0057061-T02-IM6	SOMATIC	KMT2D	KMT2D	12	9	49444233	22045386	Exon 11 of KMT2D(-)	5-UTR of CDKN2B-AS1(+):76Kb before coding start	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(9;12)(p21.3;q13.12)(chr9:g.22045386::chr12:g.49444233)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:CDKN2B-AS1}	0	NA	0	39	10	45
P-0057140-T04-IM6	SOMATIC	MET	CNTNAP2	7	7	116414116	147521398	Intron of MET(+):818bp before exon 15	Intron of CNTNAP2(+):79Kb before exon 14	GRCh37	DELETION	MET (NM_000245) - CNTNAP2 (NM_014141) rearrangement: c.3029-819:MET_c.2099-79259:CNTNAP2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {MET:CNTNAP2}	31107282	NA	0	75	10	83
P-0057426-T02-IM6	SOMATIC	MEN1	MEN1	11	11	64574627	64642409	Intron of MEN1(-):23bp after exon 5	Intron of EHD1(-):419bp before exon 2	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.839+24:MEN1_chr11:g.64642409inv	PRECISE		MANUAL_OK	3to3	-	67782	NA	0	9	10	9
P-0057798-T01-IM6	SOMATIC	TP53	TP53	17	17	7572933	7576463	Exon 11 of TP53(-)	Intron of TP53(-):389bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+390_c.1176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3530	NA	0	4	10	4
P-0057799-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	5	18273112	117172752	Exon 8 of PIK3R2(+)	5-UTR of LOC102467224(+):429Kb before coding start	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(5;19)(q23.1;p13.11)(chr5:g.117172752::chr19:g.18273112)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LOC102467224:PIK3R2}	0	NA	0	17	10	17
P-0057802-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151856003	151946372	Exon 44 of KMT2C(-)	Intron of KMT2C(-):588bp after exon 13	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.1813+589_c.11615dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	90369	NA	0	19	10	23
P-0057814-T01-IM6	SOMATIC	SMARCD1	CERS5	12	12	50480039	50527199	Exon 2 of SMARCD1(+)	Intron of CERS5(-):1Kb after exon 9	GRCh37	INVERSION	SMARCD1 (NM_003076) - CERS5 (NM_147190) rearrangement: c.273:SMARCD1_c.1029+1130:CERS5inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SMARCD1:CERS5}	47160	NA	0	6	10	6
P-0057840-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63848621	63852389	Intron of ARID5B(+):2Kb before exon 10	Exon 10 of ARID5B(+)	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.1399-2000_c.3167del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3768	NA	0	12	0	12
P-0057841-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266114	41266682	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.111_c.479del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	568	NA	0	28	0	31
P-0057842-T01-IM6	SOMATIC	ERG	ERG	21	21	39763725	44343009	Intron of ERG(-):88bp before exon 8	IGR: 30Kb before NDUFV3(+)	GRCh37	DELETION	ERG (NM_182918) rearrangement: c.815-88:ERG_chr21:g.44343009del	PRECISE		MANUAL_OK	3to5	-	4579284	NA	0	9	10	9
P-0057842-T01-IM6	SOMATIC	SYK	SYK	9	9	93606437	96116053	Exon 2 of SYK(+)	IGR: 36Kb before C9orf129(-)	GRCh37	INVERSION	SYK (NM_003177) rearrangement: c.257:SYK_chr9:g.96116053inv	PRECISE		MANUAL_OK	5to5	-	2509616	NA	0	37	10	45
P-0057844-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	1981390	2185855	Promoter of CSNK1G2(+):40Kb from tx start	Exon 3 of DOT1L(+)	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.127:DOT1L_chr19:g.1981390del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CSNK1G2:DOT1L}	204465	NA	0	8	10	8
P-0057944-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098790	178118963	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):10Kb after exon 1	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.45+10297_c.255del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	20173	NA	0	63	10	66
P-0057962-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63444242	63530092	IGR: 80Kb before AXIN2(-)	Exon 10 of AXIN2(-)	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.2343:AXIN2_chr17:g.63444242del	PRECISE		MANUAL_OK	3to5	-	85850	NA	0	17	10	17
P-0057963-T01-IM6	SOMATIC	RTEL1	RTEL1	20	7	62325729	49273178	Exon 31 of RTEL1(+)	IGR: 309Kb before CDC14C(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(7;20)(p12.2;q13.33)(chr7:g.49273178::chr20:g.62325729)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	72	10	73
P-0057966-T01-IM6	SOMATIC	NF2	NF2	22	8	30064396	64475537	Exon 10 of NF2(+)	IGR: 97Kb before LOC102724612(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(8;22)(q12.3;q12.2)(chr8:g.64475537::chr22:g.30064396)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	32
P-0057981-T01-IM6	SOMATIC	TMPRSS2	KRTAP10	21	21	42843843	45994683	Exon 10 of TMPRSS2(-)	Exon 1 of KRTAP10-4(+)	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - KRTAP10-4 (NM_198687) rearrangement: c.1076:TMPRSS2_c.1048:KRTAP10-4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TMPRSS2:KRTAP10-4}	3150840	NA	0	5	10	5
P-0057984-T01-IM6	SOMATIC	ADCY8	NBN	8	8	90982718	132036985	Exon 7 of NBN(-)	Intron of ADCY8(-):15Kb after exon 1	GRCh37	DELETION	ADCY8 (NM_001115) - NBN (NM_002485) rearrangement: c.960+14635:ADCY8_c.770:NBNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ADCY8:NBN}	41054267	NA	0	22	10	23
P-0057991-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67236102	67591133	IGR: 250Kb before LOC102467655(+)	Exon 13 of PIK3R1(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1726:PIK3R1_chr5:g.67236102inv	PRECISE		MANUAL_OK	3to3	-	355031	NA	0	16	10	16
P-0057993-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57485633	62540420	Exon 2 of NAB2(+)	5-UTR of FAM19A2(-):436Kb before coding start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.809:NAB2_chr12:g.62540420inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAM19A2:NAB2}	5054787	NA	0	12	10	12
P-0057996-T01-IM6	SOMATIC	RXRA	RXRA	9	9	137323098	137325927	Intron of RXRA(+):652bp before exon 8	Intron of RXRA(+):20bp before exon 9	GRCh37	DELETION	RXRA (NM_002957) rearrangement: c.1044-653_c.1136-21del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2829	NA	0	10	10	10
P-0057999-T01-IM6	SOMATIC	USP10	RAF1	16	3	84768336	12641786	Intron of USP10(+):1Kb after exon 2	Intron of RAF1(-):8bp before exon 9	GRCh37	TRANSLOCATION	USP10 (NM_005153) - RAF1 (NM_002880) rearrangement: t(3;16)(p25.2;q24.1)(chr3:g.12641786::chr16:g.84768336)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {USP10:RAF1}	0	NA	0	167	10	166
P-0058000-T01-IM6	SOMATIC	PHOX2B	PHOX2B	4	4	41750397	42164985	Exon 1 of PHOX2B(-)	IGR: 52Kb before BEND4(-)	GRCh37	INVERSION	PHOX2B (NM_003924) rearrangement: c.231:PHOX2B_chr4:g.42164985inv	PRECISE		MANUAL_OK	5to5	-	414588	NA	0	14	10	19
P-0058014-T01-IM6	SOMATIC	CD79A	CD79A	19	10	42384888	20802838	Intron of CD79A(+):45bp before exon 5	IGR: 38Kb before MIR4675(+)	GRCh37	TRANSLOCATION	CD79A (NM_001783) rearrangement: t(10;19)(p12.31;q13.2)(chr10:g.20802838::chr19:g.42384888)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	6	0	6
P-0058016-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89684746	89685408	Intron of PTEN(+):523bp before exon 3	Intron of PTEN(+):94bp after exon 3	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.165-524_c.209+94dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	662	NA	0	5	0	5
P-0058031-T01-IM6	SOMATIC	FGFR2	WAC	10	10	28878314	123243180	Intron of WAC(+):350bp before exon 5	Intron of FGFR2(-):31bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - WAC (NM_016628) fusion: c.2301+32:FGFR2_c.382-351:WACinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:WAC}	94364866	NA	0	44	10	48
P-0048454-T02-IM6	SOMATIC	BRD4	BRD4	19	19	15368247	15383895	Intron of BRD4(-):263bp before exon 8	Exon 2 of BRD4(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.16_c.1342-263del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	15648	NA	0	6	10	6
P-0056490-T01-IM6	SOMATIC	TET1	TET1	10	10	13930716	70360607	Intron of FRMD4A(-):30Kb before exon 3	Intron of TET1(+):130bp before exon 3	GRCh37	DELETION	TET1 (NM_030625) rearrangement: c.1915-131:TET1_chr10:g.13930716del	PRECISE		MANUAL_OK	3to5	-	56429891	NA	0	24	10	24
P-0057388-T02-IM6	SOMATIC	PIK3R2	PIK3R2	19	19	18279802	20295084	Intron of PIK3R2(+):94bp before exon 16	Intron of ZNF486(+):80bp before exon 2	GRCh37	INVERSION	PIK3R2 (NM_005027) rearrangement: c.1980-95:PIK3R2_chr19:g.20295084inv	PRECISE		MANUAL_OK	5to5	-	2015282	NA	0	11	10	13
P-0057391-T02-IM6	SOMATIC	EML4	ALK	2	2	29447092	42504972	Intron of ALK(-):698bp before exon 20	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3018:EML4_c.3173-698:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13057880	NA	0	38	10	53
P-0057592-T02-IM6	SOMATIC	RB1	RB1	13	2	49034036	228691510	Intron of RB1(+):67bp after exon 20	IGR: 13Kb before CCL20(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(2;13)(q36.3;q14.2)(chr2:g.228691510::chr13:g.49034036)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	49	10	50
P-0057592-T02-IM6	SOMATIC	AKT2	AKT2	19	19	40741200	40748753	Exon 12 of AKT2(-)	Intron of AKT2(-):159bp before exon 5	GRCh37	DUPLICATION	AKT2 (NM_001626) rearrangement: c.288-159_c.1233dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7553	NA	0	6	0	6
P-0057691-T02-IM6	SOMATIC	CREB1	EWSR1	22	2	29683481	208439768	Intron of EWSR1(+):358bp after exon 8	Intron of CREB1(+):227bp before exon 7	GRCh37	TRANSLOCATION	CREB1 (NM_134442) - EWSR1 (NM_013986) rearrangement: t(2;22)(q33.3;q12.2)(chr2:g.208439768::chr22:g.29683481)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CREB1:EWSR1}	0	NA	0	111	10	113
P-0057741-T01-IM6	SOMATIC	EP300	EP300	22	22	41573235	41574532	Exon 31 of EP300(+)	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.5520_c.6817del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1297	NA	0	17	10	17
P-0057786-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488244	57492884	Intron of NAB2(+):150bp before exon 7	Intron of STAT6(-):23bp before exon 17	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-151:NAB2_c.1892-23:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	4640	NA	0	61	10	61
P-0057791-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113852607	113982983	IGR: 23Kb before IL1F10(+)	Intron of PAX8(-):2Kb after exon 10	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.1189+1749:PAX8_chr2:g.113852607inv	PRECISE		MANUAL_OK	5to5	-	130376	NA	0	38	10	49
P-0057791-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113983214	114030967	Intron of PAX8(-):2Kb after exon 10	Intron of PAX8(-):5Kb after exon 2	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.25+4980_c.1189+1518del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	47753	NA	0	23	10	23
P-0057791-T01-IM6	SOMATIC	PAX8	PAX8	8	2	65450039	113979796	IGR: 37Kb before LOC401463(-)	Intron of PAX8(-):2Kb before exon 11	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;8)(q13;q12.3)(chr2:g.113979796::chr8:g.65450039)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	80	10	83
P-0057793-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39864374	42871271	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1155:TMPRSS2_c.18+5913:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006897	NA	0	75	10	78
P-0057818-T01-IM6	SOMATIC	MAPT	BRCA1	17	17	41234445	44041307	Exon 12 of BRCA1(-)	Intron of MAPT(+):1Kb after exon 2	GRCh37	INVERSION	MAPT (NM_001123066) - BRCA1 (NM_007294) rearrangement: c.133+1471:MAPT_c.4333:BRCA1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MAPT:BRCA1}	2806862	NA	0	9	10	9
P-0057831-T01-IM6	SOMATIC	FANCA	FANCA	16	7	89805673	127943538	Exon 41 of FANCA(-)	3-UTR of MGC27345(-):4Kb after coding stop	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(7;16)(q32.1;q24.3)(chr7:g.127943538::chr16:g.89805673)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	30	10	30
P-0057856-T02-IM6	SOMATIC	SPEN	SPEN	1	1	10958462	16258482	IGR: 48Kb before C1orf127(-)	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.5747:SPEN_chr1:g.10958462inv	PRECISE		MANUAL_OK	5to5	-	5300020	NA	0	13	10	14
P-0057856-T02-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	103542227	106524467	Intron of RELN(-):15Kb after exon 2	Intron of PIK3CG(+):132bp before exon 9	GRCh37	DELETION	PIK3CG (NM_002649) rearrangement: c.2761-133:PIK3CG_chr7:g.103542227del	PRECISE		MANUAL_OK	3to5	-	2982240	NA	0	5	7	5
P-0057931-T01-IM6	SOMATIC	STAT5A	PPM1E	17	17	40441540	56852032	Exon 3 of STAT5A(+)	Intron of PPM1E(+):18Kb after exon 1	GRCh37	DELETION	STAT5A (NM_003152) - PPM1E (NM_014906) rearrangement: c.111:STAT5A_c.464+18210:PPM1Edel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAT5A:PPM1E}	16410492	NA	0	47	10	48
P-0057932-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55199650	55223188	Intron of EGFR(+):10Kb before exon 2	Intron of EGFR(+):334bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-10329_c.890-335del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	23538	NA	0	40	10	1073
P-0057935-T01-IM6	SOMATIC	CDC73	CDC73	1	1	161815082	193172761	Intron of ATF6(+):1Kb before exon 10	Intron of CDC73(+):163bp before exon 11	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.973-164:CDC73_chr1:g.161815082inv	PRECISE		MANUAL_OK	5to5	-	31357679	NA	0	5	5	5
P-0057971-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348058	352105	Exon 6 of AXIN1(-)	Intron of AXIN1(-):2Kb after exon 5	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.1254+2199_c.1448del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4047	NA	0	37	10	39
P-0057971-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11096046	11168055	Exon 3 of SMARCA4(+)	Intron of SMARCA4(+):875bp before exon 31	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.320_c.4425-876del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	72009	NA	1	26	10	27
P-0057971-T01-IM6	SOMATIC	BCL6	BCL6	3	3	168192322	187446872	5-UTR of EGFEM1P(+):356Kb before coding start	Exon 5 of BCL6(-)	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.1321:BCL6_chr3:g.168192322inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BCL6:EGFEM1P}	19254550	NA	0	20	10	22
P-0057974-T01-IM6	SOMATIC	TFE3	TFE3	X	1	48895679	35647157	Intron of TFE3(-):40bp before exon 5	Promoter of SFPQ(-):2Kb from tx start	GRCh37	TRANSLOCATION	TFE3 (NM_006521) rearrangement: t(1;X)(p34.3;p11.23)(chr1:g.35647157::chrX:g.48895679)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SFPQ:TFE3}	0	NA	0	7	10	7
P-0057977-T01-IM6	SOMATIC	GNAS	GNAS	20	1	57485836	243281571	Exon 13 of GNAS(+)	IGR: 6Kb before CEP170(-)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(1;20)(q43;q13.32)(chr1:g.243281571::chr20:g.57485836)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	41
P-0057977-T01-IM6	SOMATIC	TAP2	TAP2	6	6	32429089	32796819	IGR: 21Kb before HLA-DRA(+)	Intron of TAP2(-):357bp after exon 11	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: c.1932+358:TAP2_chr6:g.32429089inv	IMPPRECISE		MANUAL_OK	3to3	-	367730	NA	0	5	0	5
P-0058045-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	339614	341646	Intron of AXIN1(-):7bp before exon 10	Intron of AXIN1(-):349bp before exon 9	GRCh37	INVERSION	AXIN1 (NM_003502) rearrangement: c.2187-349_c.2295-7inv	PRECISE		MANUAL_OK	3to3	-	2032	NA	0	26	10	25
P-0058045-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68942810	68947199	Exon 6 of PREX2(+)	Intron of PREX2(+):3Kb before exon 7	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.622_c.706-3195inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4389	NA	0	4	10	4
P-0058046-T01-IM6	SOMATIC	CUL3	CUL3	7	2	103643204	225371789	IGR: 124Kb before ORC5(-)	Intron of CUL3(-):69bp before exon 7	GRCh37	TRANSLOCATION	CUL3 (NM_003590) rearrangement: t(2;7)(q36.2;q22.1)(chr2:g.225371789::chr7:g.103643204)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	10	0	10
P-0058079-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141572768	141593925	Intron of AGO2(-):35bp before exon 4	Intron of AGO2(-):1Kb after exon 2	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.215+1293_c.337-35del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	21157	NA	0	88	10	94
P-0058102-T01-IM6	SOMATIC	SMARCA4	LDLR	19	19	11132350	11221920	Intron of SMARCA4(+):50bp before exon 19	Intron of LDLR(+):269bp before exon 8	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.2617-51:SMARCA4_c.1061-270:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SMARCA4:LDLR}	89570	NA	0	163	10	172
P-0058109-T01-IM6	SOMATIC	MEF2B	MEF2B	19	10	19259935	119324985	Intron of MEF2B(-):99bp after exon 3	IGR: 23Kb before EMX2(+)	GRCh37	TRANSLOCATION	MEF2B (NM_001145785) rearrangement: t(10;19)(q26.11;p13.11)(chr10:g.119324985::chr19:g.19259935)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	25
P-0058110-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89810016	89858417	Intron of FANCA(-):670bp before exon 37	Exon 13 of FANCA(-)	GRCh37	INVERSION	FANCA (NM_000135) rearrangement: c.1143_c.3627-670inv	PRECISE		MANUAL_OK	3to3	-	48401	NA	0	13	10	13
P-0058151-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21892826	21994282	IGR: 74Kb before CDKN2A-AS1(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.49:CDKN2A_chr9:g.21892826del	PRECISE		MANUAL_OK	3to5	-	101456	NA	0	15	10	15
P-0058153-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3652245	3904446	Exon 4 of SLX4(-)	Intron of CREBBP(-):3Kb before exon 2	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.86-3436:CREBBP_c.824:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	252201	NA	0	4	7	4
P-0058160-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21968315	21972432	Intron of CDKN2A(-):74bp before exon 3	Intron of CDKN2A(-):1Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-74:CDKN2A_c.194-1225:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	4117	NA	0	73	10	80
P-0058164-T01-IM6	SOMATIC	TTC28	APC	22	5	29065471	112175467	Intron of TTC28(-):10Kb after exon 1	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	TTC28 (NM_001145418) - APC (NM_000038) rearrangement: t(5;22)(q22.2;q12.1)(chr5:g.112175467::chr22:g.29065471)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TTC28:APC}	0	NA	0	46	10	64
P-0057845-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39987775	42873646	3-UTR of ERG(-):46Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-3530:TMPRSS2_chr21:g.39987775del	PRECISE		MANUAL_OK	3to5	-	2885871	NA	0	14	10	15
P-0001766-T04-IM6	SOMATIC	RAF1	RAF1	11	3	131028668	12629166	IGR: 212Kb before NTM(+)	Intron of RAF1(-):30bp before exon 13	GRCh37	TRANSLOCATION	RAF1 (NM_002880) rearrangement: t(3;11)(p25.2;q25)(chr3:g.12629166::chr11:g.131028668)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	23	10	23
P-0001766-T04-IM6	SOMATIC	MET	MET	19	7	55761961	116414849	5-UTR of PPP6R1(-):20Kb before coding start	Intron of MET(+):85bp before exon 15	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(7;19)(q31.2;q13.42)(chr7:g.116414849::chr19:g.55761961)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MET:PPP6R1}	0	NA	0	104	10	103
P-0001766-T04-IM6	SOMATIC	EML4	ALK	2	2	29448767	42476789	Intron of ALK(-):336bp before exon 19	Intron of EML4(+):4Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+3962:EML4_c.3068-336:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13028022	NA	0	713	10	710
P-0015961-T07-IM6	SOMATIC	EML4	ALK	2	2	29446526	42501324	Intron of ALK(-):132bp before exon 20	Intron of EML4(+):7Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-6666:EML4_c.3173-132:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13054798	NA	0	23	10	21
P-0026308-T03-IM6	SOMATIC	RAD50	RAD50	5	5	131976740	131984834	Intron of RAD50(+):243bp after exon 24	IGR: 9Kb before IL13(+)	GRCh37	INVERSION	RAD50 (NM_005732) rearrangement: c.3752+243:RAD50_chr5:g.131984834inv	PRECISE		MANUAL_OK	3to3	-	8094	NA	0	6	10	6
P-0029177-T02-IM6	SOMATIC	ERBB4	ERBB4	2	2	212426624	213056673	Intron of ERBB4(-):3bp after exon 20	Intron of ERBB4(-):67Kb before exon 2	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.83-67045_c.2487+4dup	PRECISE		MANUAL_OK	5to3	Duplication of 19 exons : out of frame	630049	NA	0	33	10	35
P-0045809-T06-IM6	SOMATIC	SUFU	SUFU	10	3	104389884	85786435	Exon 12 of SUFU(+)	Intron of CADM2(+):65Kb before exon 2	GRCh37	TRANSLOCATION	SUFU (NM_016169) rearrangement: t(3;10)(p12.1;q24.32)(chr3:g.85786435::chr10:g.104389884)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	29	10	38
P-0045809-T06-IM6	SOMATIC	RET	FBXL7	10	5	43622323	15556734	Intron of RET(+):153bp after exon 19	Intron of FBXL7(+):56Kb after exon 1	GRCh37	TRANSLOCATION	RET (NM_020975) - FBXL7 (NM_012304) fusion: t(5;10)(p15.1;q11.21)(chr5:g.15556734::chr10:g.43622323)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RET:FBXL7}	0	NA	0	17	10	18
P-0046022-T02-IM6	SOMATIC	MST1	MST1	3	2	49724485	107873749	Exon 6 of MST1(-)	IGR: 444Kb before ST6GAL2(-)	GRCh37	TRANSLOCATION	MST1 (NM_020998) rearrangement: t(2;3)(q12.3;p21.31)(chr2:g.107873749::chr3:g.49724485)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	9
P-0046090-T02-IM6	SOMATIC	EWSR1	EWSR1	22	22	29692202	29695064	Intron of EWSR1(+):26bp before exon 13	Intron of EWSR1(+):159bp before exon 16	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.1180-27_c.1596-160dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	2862	NA	0	334	0	343
P-0050287-T02-IM6	SOMATIC	RTEL1	RTEL1	20	15	62294305	35739770	Intron of RTEL1(+):63bp after exon 6	Intron of DPH6(-):3Kb after exon 5	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(15;20)(q14;q13.33)(chr15:g.35739770::chr20:g.62294305)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RTEL1:DPH6}	0	NA	0	166	0	165
P-0053553-T02-IM6	SOMATIC	PTEN	PTEN	10	10	89624254	89752263	Exon 1 of PTEN(+)	IGR: 129Kb before PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.28:PTEN_chr10:g.89752263del	PRECISE		MANUAL_OK	3to5	-	128009	NA	0	16	10	41
P-0055303-T02-IM6	SOMATIC	WHSC1L1	ANK1	8	8	38175444	41625556	Intron of WHSC1L1(-):968bp after exon 9	Intron of ANK1(-):10Kb before exon 2	GRCh37	DUPLICATION	WHSC1L1 (NM_023034) - ANK1 (NM_001142446) rearrangement: c.1855+969:WHSC1L1_c.127-9901:ANK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {WHSC1L1:ANK1}	3450112	NA	0	60	10	62
P-0055303-T02-IM6	SOMATIC	FGFR1	TACC1	8	8	38274883	38604425	Exon 13 of FGFR1(-)	5-UTR of TACC1(+):73Kb before coding start	GRCh37	INVERSION	FGFR1 (NM_001174067) - TACC1 (NM_001146216.2) fusion: c.1697:FGFR1_c.-425+18236:TACC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR1:TACC1}	329542	NA	0	49	10	56
P-0055621-T05-IM6	SOMATIC	SLAMF6	NTRK1	1	1	156836411	160468020	Intron of NTRK1(+):290bp before exon 4	Intron of SLAMF6(-):7Kb before exon 2	GRCh37	INVERSION	SLAMF6 (NM_052931) - NTRK1 (NM_002529) fusion: c.50-1837:SLAMF6_c.360-291:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SLAMF6:NTRK1}	3631609	NA	0	36	0	50
P-0056418-T03-IM6	SOMATIC	AGO2	AGO2	8	8	141549457	141553057	Exon 16 of AGO2(-)	Intron of AGO2(-):1Kb after exon 14	GRCh37	INVERSION	AGO2 (NM_012154) rearrangement: c.1839+1255_c.2131inv	PRECISE		MANUAL_OK	3to3	-	3600	NA	0	9	10	10
P-0057378-T02-IM6	SOMATIC	NT5DC2	BAP1	3	3	52439483	52565730	Intron of BAP1(-):173bp before exon 11	Intron of NT5DC2(-):2Kb before exon 2	GRCh37	DELETION	NT5DC2 (NM_001134231) - BAP1 (NM_004656) rearrangement: c.232+1792:NT5DC2_c.932-173:BAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {NT5DC2:BAP1}	126247	NA	0	13	10	15
P-0057427-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46122759	46123791	Promoter of ARID2(+):860bp from tx start	Intron of ARID2(+):35bp before exon 2	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.93-36:ARID2_chr12:g.46122759del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1032	NA	0	88	0	89
P-0057427-T02-IM6	SOMATIC	MTOR	MTOR	13	1	35860916	11182279	Intron of NBEA(+):4Kb before exon 35	Intron of MTOR(-):96bp before exon 48	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;13)(p36.22;q13.3)(chr1:g.11182279::chr13:g.35860916)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	62	10	65
P-0057435-T02-IM6	SOMATIC	ETV6	ETV6	12	1	12013251	237547858	Intron of ETV6(+):7Kb after exon 4	Intron of RYR2(+):3Kb before exon 9	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(1;12)(q43;p13.2)(chr1:g.237547858::chr12:g.12013251)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	55	10	59
P-0057586-T02-IM6	SOMATIC	MPL	TRIT1	1	1	40332830	43812392	Intron of TRIT1(-):10Kb before exon 2	Intron of MPL(+):70bp before exon 8	GRCh37	INVERSION	MPL (NM_005373) - TRIT1 (NM_017646) rearrangement: c.1166-71:MPL_c.175-9741:TRIT1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MPL:TRIT1}	3479562	NA	0	2	5	2
P-0057586-T02-IM6	SOMATIC	JAK1	JAK1	1	1	65252220	65325726	Intron of RAVER2(+):3Kb before exon 5	Intron of JAK1(-):61bp after exon 9	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.1334+62:JAK1_chr1:g.65252220del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	73506	NA	0	6	0	6
P-0057586-T02-IM6	SOMATIC	MALT1	MALT1	18	18	56402511	56435191	Exon 13 of MALT1(+)	IGR: 95Kb before ZNF532(+)	GRCh37	INVERSION	MALT1 (NM_006785) rearrangement: c.1553:MALT1_chr18:g.56435191inv	PRECISE		MANUAL_OK	3to3	-	32680	NA	0	2	9	2
P-0057586-T02-IM6	SOMATIC	LATS1	LATS1	6	6	128505468	150005042	Intron of PTPRK(-):108bp after exon 7	Exon 4 of LATS1(-)	GRCh37	INVERSION	LATS1 (NM_004690) rearrangement: c.1183:LATS1_chr6:g.128505468inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	21499574	NA	0	11	10	13
P-0057588-T02-IM6	SOMATIC	DROSHA	DROSHA	5	5	31401596	31404334	Exon 35 of DROSHA(-)	Intron of DROSHA(-):1Kb after exon 34	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.3994+1450_c.4068del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2738	NA	0	11	10	11
P-0057821-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	18	39623727	64146397	Exon 20 of PIK3C3(+)	IGR: 22Kb before CDH19(-)	GRCh37	DELETION	PIK3C3 (NM_002647) rearrangement: c.2134:PIK3C3_chr18:g.64146397del	PRECISE		MANUAL_OK	3to5	-	24522670	NA	0	7	10	9
P-0057873-T02-IM6	SOMATIC	ARID1A	ARID1A	1	1	10954702	27057585	IGR: 52Kb before C1orf127(-)	Intron of ARID1A(+):57bp before exon 3	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.1351-58:ARID1A_chr1:g.10954702inv	PRECISE		MANUAL_OK	5to5	-	16102883	NA	0	24	10	28
P-0057913-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684319	32417901	Intron of EWSR1(+):275bp before exon 9	Exon 7 of WT1(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417901::chr22:g.29684319)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:WT1}	0	NA	0	194	10	188
P-0057977-T02-IM6	SOMATIC	KDM5A	KDM5A	12	12	440894	458012	Intron of KDM5A(-):90bp after exon 13	Intron of KDM5A(-):2Kb after exon 10	GRCh37	DUPLICATION	KDM5A (NM_001042603) rearrangement: c.1308+1775_c.1773+91dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	17118	NA	0	18	10	26
P-0057977-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139393662	139409851	Exon 32 of NOTCH1(-)	Exon 12 of NOTCH1(-)	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.1905_c.5984dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	16189	NA	0	9	10	9
P-0057977-T02-IM6	SOMATIC	KDM6A	KDM6A	X	X	44926879	44929379	Intron of KDM6A(+):2Kb before exon 17	Exon 17 of KDM6A(+)	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.1924-1945_c.2479dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2500	NA	0	3	8	4
P-0058086-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11135194	11150253	Intron of SMARCA4(+):80bp after exon 21	Intron of SMARCA4(+):2Kb before exon 30	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3081+80_c.4171-1730del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	15059	NA	0	84	10	85
P-0058106-T01-IM6	SOMATIC	PRDM14	PRDM14	19	8	57449641	70981400	IGR: 97Kb before MIMT1(+)	Exon 2 of PRDM14(-)	GRCh37	TRANSLOCATION	PRDM14 (NM_024504) rearrangement: t(8;19)(q13.3;q13.43)(chr8:g.70981400::chr19:g.57449641)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	89	10	111
P-0058155-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53223647	53241775	Exon 23 of KDM5C(-)	Intron of KDM5C(-):687bp before exon 9	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.1123-687_c.3712del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18128	NA	0	3	6	3
P-0058175-T01-IM6	SOMATIC	SMAD2	SMAD2	18	10	45368221	18407452	Exon 11 of SMAD2(-)	IGR: 22Kb before CACNB2(+)	GRCh37	TRANSLOCATION	SMAD2 (NM_001003652) rearrangement: t(10;18)(p12.33;q21.1)(chr10:g.18407452::chr18:g.45368221)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	6
P-0058186-T01-IM6	SOMATIC	CHEK2	CHEK2	22	22	29121121	29123951	Intron of CHEK2(-):9bp before exon 4	Intron of CHEK2(-):3Kb before exon 3	GRCh37	DELETION	CHEK2 (NM_007194) rearrangement: c.320-2596_c.445-9del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2830	NA	0	22	10	22
P-0058200-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854724	42870336	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):220bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-220:TMPRSS2_c.18+15563:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015612	NA	0	177	10	191
P-0058202-T01-IM6	SOMATIC	YAP1	YAP1	11	11	101984998	102005745	Exon 2 of YAP1(+)	Intron of YAP1(+):21Kb after exon 2	GRCh37	INVERSION	YAP1 (NM_001130145) rearrangement: c.445_c.572+20620inv	PRECISE		MANUAL_OK	5to5	-	20747	NA	0	37	10	43
P-0058204-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89719196	89724959	Intron of PTEN(+):1Kb after exon 7	Intron of PTEN(+):84bp before exon 9	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.801+1420_c.1027-85del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	5763	NA	0	8	10	17
P-0058214-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39817601	42868322	Intron of ERG(-):57bp before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1724:TMPRSS2_c.19-57:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3050721	NA	0	22	10	24
P-0058226-T01-IM6	SOMATIC	IKBKE	THBS3	1	1	155166925	206648064	Exon 20 of THBS3(-)	Intron of IKBKE(+):143bp before exon 5	GRCh37	INVERSION	IKBKE (NM_014002) - THBS3 (NM_007112) rearrangement: c.229-144:IKBKE_c.2579:THBS3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {IKBKE:THBS3}	51481139	NA	0	3	10	3
P-0058226-T01-IM6	SOMATIC	ETV6	ETV6	12	3	12015345	131718373	Intron of ETV6(+):7Kb before exon 5	Intron of CPNE4(-):38Kb after exon 2	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(3;12)(q22.1;p13.2)(chr3:g.131718373::chr12:g.12015345)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	9	10	9
P-0058226-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3416990	3807858	IGR: 4Kb before MTRNR2L4(-)	Exon 18 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.3561:CREBBP_chr16:g.3416990del	PRECISE		MANUAL_OK	3to5	-	390868	NA	0	47	10	112
P-0058245-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	350078	62311298	IGR: 11Kb before TRIB3(+)	Exon 13 of RTEL1(+)	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.1206:RTEL1_chr20:g.350078inv	PRECISE		MANUAL_OK	3to3	-	61961220	NA	0	2	5	2
P-0058250-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	8	11141805	34982057	Intron of SMARCA4(+):236bp after exon 25	IGR: 111Kb before UNC5D(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(8;19)(p12;p13.2)(chr8:g.34982057::chr19:g.11141805)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	17	10	17
P-0058250-T01-IM6	SOMATIC	KIAA1755	TOP1	20	20	36884494	39728767	Intron of KIAA1755(-):4Kb after exon 1	Exon 12 of TOP1(+)	GRCh37	INVERSION	KIAA1755 (NM_001029864) - TOP1 (NM_003286) rearrangement: c.3+4406:KIAA1755_c.1047:TOP1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIAA1755:TOP1}	2844273	NA	0	16	10	19
P-0058265-T01-IM6	SOMATIC	NF1	NF1	17	6	29663815	62017257	Exon 42 of NF1(+)	IGR: 267Kb before MTRNR2L9(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(6;17)(q11.1;q11.2)(chr6:g.62017257::chr17:g.29663815)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	14
P-0058275-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55100800	55223089	Intron of EGFR(+):14Kb after exon 1	Intron of EGFR(+):433bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+13742_c.890-434del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	122289	NA	0	14	0	90
P-0058280-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061136	38071465	Exon 2 of FOXA1(-)	IGR: 13Kb before FOXA1(-)	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.853:FOXA1_chr14:g.38071465inv	PRECISE		MANUAL_OK	5to5	-	10329	NA	0	3	10	3
P-0058318-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43609857	43748359	IGR: 10Kb before LCMT2(-)	Exon 12 of TP53BP1(-)	GRCh37	DELETION	TP53BP1 (NM_001141980) rearrangement: c.2447:TP53BP1_chr15:g.43609857del	IMPPRECISE		MANUAL_OK	3to5	-	138502	NA	0	5	0	5
P-0058319-T01-IM6	SOMATIC	EZH2	CNTNAP2	7	7	147306108	148510925	Intron of CNTNAP2(+):30Kb before exon 13	Intron of EZH2(-):125bp after exon 15	GRCh37	INVERSION	EZH2 (NM_004456) - CNTNAP2 (NM_014141) rearrangement: c.1851+126:EZH2_c.1898-30090:CNTNAP2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {EZH2:CNTNAP2}	1204817	NA	0	8	9	8
P-0058321-T01-IM6	SOMATIC	IGF2	IGF2	11	11	1659608	2156734	IGR: 9Kb before KRTAP5-5(+)	Exon 3 of IGF2(-)	GRCh37	DELETION	IGF2 (NM_001127598) rearrangement: c.188:IGF2_chr11:g.1659608del	PRECISE		MANUAL_OK	3to5	-	497126	NA	0	25	10	27
P-0058323-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72212122	72992988	IGR: 59Kb before PMFBP1(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.1057:ZFHX3_chr16:g.72212122del	IMPPRECISE		MANUAL_OK	3to5	-	780866	NA	0	6	0	6
P-0058331-T01-IM6	SOMATIC	DCUN1D1	MCCC1	3	3	182683262	182753489	Intron of DCUN1D1(-):62bp after exon 2	Intron of MCCC1(-):2Kb after exon 11	GRCh37	DUPLICATION	DCUN1D1 (NM_020640) - MCCC1 (NM_020166) rearrangement: c.220+63:DCUN1D1_c.1594+1517:MCCC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DCUN1D1:MCCC1}	70227	NA	0	57	10	62
P-0058338-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38059235	38060896	3-UTR of FOXA1(-):1Kb after coding stop	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1093:FOXA1_chr14:g.38059235del	PRECISE		MANUAL_OK	3to5	-	1661	NA	0	5	8	5
P-0058339-T01-IM6	SOMATIC	FGFR2	PAH	12	10	103294473	123240026	Intron of PAH(-):6Kb before exon 3	Intron of FGFR2(-):491bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - PAH (NM_000277) fusion: t(10;12)(q26.13;q23.2)(chr10:g.123240026::chr12:g.103294473)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:PAH}	0	NA	0	82	10	84
P-0058343-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138555248	140482139	Intron of KIAA1549(-):654bp after exon 13	Intron of BRAF(-):646bp before exon 11	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4551+655:KIAA1549_c.1315-646:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1926891	NA	0	4	8	5
P-0058345-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	1	42874777	142626964	Intron of TMPRSS2(-):5Kb before exon 2	IGR: 70Kb before ANKRD20A12P(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q21.1;q22.3)(chr1:g.142626964::chr21:g.42874777)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	47	10	59
P-0058349-T01-IM6	SOMATIC	CELF5	DOT1L	19	19	2210517	3254330	Intron of DOT1L(+):8bp after exon 13	Intron of CELF5(+):3Kb after exon 2	GRCh37	DUPLICATION	CELF5 (NM_021938) - DOT1L (NM_032482) rearrangement: c.342+3265:CELF5_c.1116+8:DOT1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CELF5:DOT1L}	1043813	NA	0	125	10	132
P-0058350-T01-IM6	SOMATIC	NF1	NF1	17	17	29576938	29587618	Intron of NF1(+):801bp after exon 30	Intron of NF1(+):85bp after exon 34	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4110+801_c.4577+85dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	10680	NA	0	24	0	25
P-0058352-T01-IM6	SOMATIC	ATM	ATM	11	11	108184120	108186712	Intron of ATM(+):895bp after exon 40	Intron of ATM(+):25bp before exon 42	GRCh37	DUPLICATION	ATM (NM_000051) rearrangement: c.6006+895_c.6096-26dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2592	NA	0	32	10	34
P-0058352-T01-IM6	SOMATIC	BRCA1	MPP2	17	17	41242884	41966631	Intron of BRCA1(-):76bp after exon 11	Intron of MPP2(-):6Kb before exon 3	GRCh37	DUPLICATION	BRCA1 (NM_007294) - MPP2 (NM_005374) rearrangement: c.4185+77:BRCA1_c.151-5908:MPP2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {BRCA1:MPP2}	723747	NA	0	9	10	9
P-0058352-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	19	18278012	18279861	Exon 13 of PIK3R2(+)	Intron of PIK3R2(+):35bp before exon 16	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement: c.1632_c.1980-36del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1849	NA	0	85	10	89
P-0058368-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	115280550	115282109	Intron of CSDE1(-):33bp after exon 5	Intron of CSDE1(-):203bp after exon 4	GRCh37	DUPLICATION	CSDE1 (NM_001242891) rearrangement: c.337+204_c.447+34dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1559	NA	0	2	10	2
P-0058368-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	18739845	42873170	IGR: 71Kb before LINC01549(+)	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DUPLICATION	TMPRSS2 (NM_001135099) rearrangement: c.56-3054:TMPRSS2_chr21:g.18739845dup	PRECISE		MANUAL_OK	5to3	-	24133325	NA	0	4	10	4
P-0058370-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56435825	56451469	Exon 9 of RNF43(-)	Intron of RNF43(-):3Kb before exon 3	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.253-3075_c.1312dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15644	NA	2	57	10	56
P-0058370-T01-IM6	SOMATIC	FYN	FYN	6	6	112021420	112030824	Intron of FYN(-):547bp before exon 6	Intron of FYN(-):2Kb before exon 3	GRCh37	DELETION	FYN (NM_153047) rearrangement: c.345-1601_c.698-547del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	9404	NA	1	45	10	47
P-0058375-T01-IM6	SOMATIC	EGFR	TNRC18	7	7	5378824	55269897	Intron of TNRC18(-):6Kb before exon 19	Intron of EGFR(+):312bp before exon 27	GRCh37	INVERSION	EGFR (NM_005228) - TNRC18 (NM_001080495) fusion: c.3163-313:EGFR_c.5720-6144:TNRC18inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EGFR:TNRC18}	49891073	NA	0	7	9	7
P-0058378-T01-IM6	SOMATIC	POLE	YAP1	12	11	133254154	101988548	Intron of POLE(-):9bp after exon 7	Intron of YAP1(+):3Kb after exon 2	GRCh37	TRANSLOCATION	POLE (NM_006231) - YAP1 (NM_001130145) rearrangement: t(11;12)(q22.1;q24.33)(chr11:g.101988548::chr12:g.133254154)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {POLE:YAP1}	0	NA	0	12	10	13
P-0058383-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	53223118	53372588	Intron of KDM5C(-):85bp before exon 24	IGR: 28Kb before SMC1A(-)	GRCh37	DELETION	KDM5C (NM_004187) rearrangement: c.4039-85:KDM5C_chrX:g.53372588del	PRECISE		MANUAL_OK	3to5	-	149470	NA	0	21	10	21
P-0058400-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55191952	55223402	Intron of EGFR(+):18Kb before exon 2	Intron of EGFR(+):120bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-18027_c.890-121del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	31450	NA	0	125	0	554
P-0058422-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57486802	57511088	Intron of NAB2(+):43bp before exon 5	IGR: 11Kb before LRP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1144-44:NAB2_chr12:g.57511088inv	PRECISE		MANUAL_OK	3to3	-	24286	NA	0	257	10	254
P-0055969-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683823	128674720	Intron of EWSR1(+):700bp after exon 8	Intron of FLI1(+):540bp before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128674720::chr22:g.29683823)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	27	10	29
P-0058386-T01-IM6	SOMATIC	SETD2	SETD2	3	3	32249937	47164600	IGR: 30Kb before CMTM8(+)	Exon 3 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.1526:SETD2_chr3:g.32249937del	PRECISE		MANUAL_OK	3to5	-	14914663	NA	0	107	10	123
P-0058389-T01-IM6	SOMATIC	ARID2	ARID2	12	12	46244711	46262733	Exon 15 of ARID2(+)	Intron of ARID2(+):8Kb after exon 16	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.2805_c.4922+8001dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	18022	NA	0	21	0	21
P-0058405-T01-IM6	SOMATIC	KIT	KIT	18	4	65647739	55604660	IGR: 464Kb before LOC643542(+)	Exon 21 of KIT(+)	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(4;18)(q12;q22.1)(chr4:g.55604660::chr18:g.65647739)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	13	10	15
P-0058408-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88492156	12035760	Intron of NTRK3(-):8Kb before exon 15	Intron of ETV6(+):2Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12035760::chr15:g.88492156)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	84	10	83
P-0043220-T01-IM6	SOMATIC	SLX4	SLX4	16	8	3639778	51449271	Exon 12 of SLX4(-)	Exon 11 of SNTG1(+)	GRCh37	TRANSLOCATION	SLX4 (NM_032444) rearrangement: t(8;16)(q11.21;p13.3)(chr8:g.51449271::chr16:g.3639778)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	32	10	32
P-0055363-T02-IM6	SOMATIC	CSDE1	CSDE1	6	1	51262602	115275398	IGR: 218Kb before PKHD1(-)	Exon 11 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;6)(p13.2;p12.3)(chr1:g.115275398::chr6:g.51262602)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	31	10	31
P-0058467-T01-IM6	SOMATIC	LATS2	LATS2	13	13	21549301	99685209	Exon 8 of LATS2(-)	Intron of DOCK9(-):53Kb after exon 1	GRCh37	INVERSION	LATS2 (NM_014572) rearrangement: c.2975:LATS2_chr13:g.99685209inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	78135908	NA	0	85	10	107
P-0058467-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1615204	2608073	Intron of TCF3(-):480bp after exon 16	5-UTR of GNG7(-):93Kb before coding start	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1586+481:TCF3_chr19:g.2608073inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	992869	NA	0	7	9	7
P-0058538-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37617869	37619294	5-UTR of CDK12(+):455bp before coding start	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.970:CDK12_chr17:g.37617869del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1425	NA	0	21	10	22
P-0058541-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25976517	26096524	Intron of ASXL2(-):9bp before exon 10	Intron of ASXL2(-):5Kb after exon 1	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.57+4511_c.1037-9del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	120007	NA	0	8	10	8
P-0028484-T01-IM6	SOMATIC	TP53	TP53	17	17	7579636	78615290	Intron of TP53(-):46bp before exon 4	Intron of RPTOR(+):2Kb before exon 3	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.266-2238:RPTOR_c.97-46:TP53inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RPTOR:TP53}	71035654	NA	0	5	0	5
P-0028484-T02-IM6	SOMATIC	RPTOR	TP53	17	17	7579634	78615296	Intron of TP53(-):44bp before exon 4	Intron of RPTOR(+):2Kb before exon 3	GRCh37	INVERSION	RPTOR (NM_020761) - TP53 (NM_000546) rearrangement: c.266-2232:RPTOR_c.97-44:TP53inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RPTOR:TP53}	71035662	NA	0	52	10	51
P-0028484-T02-IM6	SOMATIC	SCAF4	EGFR	21	7	33094864	55214145	Intron of SCAF4(-):9Kb after exon 1	Intron of EGFR(+):153bp before exon 4	GRCh37	TRANSLOCATION	SCAF4 (NM_020706) - EGFR (NM_005228) fusion: t(7;21)(p11.2;q22.11)(chr7:g.55214145::chr21:g.33094864)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SCAF4:EGFR}	0	NA	0	8	10	8
P-0034675-T02-IM7	SOMATIC	SESN3	SESN3	11	11	94906995	94908845	Intron of SESN3(-):490bp before exon 10	Intron of SESN3(-):39bp before exon 9	GRCh37	DUPLICATION	SESN3 (NM_144665) rearrangement: c.1248-39_c.1393-490dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1850	NA	0	5	0	5
P-0051716-T02-IM6	SOMATIC	ETV6	ETV6	12	12	11940192	12028525	Intron of ETV6(+):35Kb after exon 2	Intron of ETV6(+):6Kb after exon 5	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.163+34679_c.1009+5622del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	88333	NA	0	47	10	49
P-0058090-T02-IM7	SOMATIC	RET	RET	10	10	43572446	43598098	Promoter of RET(+):70bp from tx start	Intron of RET(+):21bp after exon 3	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.625+21:RET_chr10:g.43572446inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	25652	NA	0	16	10	16
P-0058354-T01-IM6	SOMATIC	U2AF1	U2AF1	21	21	44494723	44515528	5-UTR of CBS(-):21Kb before coding start	Intron of U2AF1(-):19bp after exon 5	GRCh37	DELETION	U2AF1 (NM_006758) rearrangement: c.348+20:U2AF1_chr21:g.44494723del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {U2AF1:CBS}	20805	NA	0	62	10	66
P-0058455-T01-IM6	SOMATIC	CHAF1B	TMPRSS2	21	21	37769408	42873246	Intron of CHAF1B(+):304bp before exon 6	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	INVERSION	CHAF1B (NM_005441) - TMPRSS2 (NM_001135099) rearrangement: c.482-305:CHAF1B_c.56-3130:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CHAF1B:TMPRSS2}	5103838	NA	0	45	10	45
P-0058456-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42853272	42873735	Intron of TMPRSS2(-):743bp before exon 6	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-3619_c.557-743inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	20463	NA	0	42	10	69
P-0058457-T01-IM6	SOMATIC	PIK3C3	TMEM241	18	18	20945317	39637821	Intron of TMEM241(-):280bp after exon 11	Intron of PIK3C3(+):25bp before exon 22	GRCh37	INVERSION	PIK3C3 (NM_002647) - TMEM241 (NM_032933) rearrangement: c.2264-26:PIK3C3_c.601+281:TMEM241inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PIK3C3:TMEM241}	18692504	NA	0	3	7	3
P-0058458-T01-IM6	SOMATIC	TCF7L2	VTI1A	10	10	114407239	114925461	Intron of VTI1A(+):21Kb before exon 6	Exon 14 of TCF7L2(+)	GRCh37	DUPLICATION	TCF7L2 (NM_001146274) - VTI1A (NM_145206) rearrangement: c.1539:TCF7L2_c.428-20738:VTI1Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TCF7L2:VTI1A}	518222	NA	0	30	10	32
P-0058477-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178097912	178102331	Intron of NFE2L2(-):65bp after exon 3	Intron of NFE2L2(-):3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-3332_c.402+66del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4419	NA	0	4	6	4
P-0058477-T01-IM7	SOMATIC	SOX2	SOX2	3	3	181430765	181716431	Exon 1 of SOX2(+)	5-UTR of LINC01206(+):12Kb before coding start	GRCh37	DUPLICATION	SOX2 (NM_003106) rearrangement: c.617:SOX2_chr3:g.181716431dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LINC01206:SOX2}	285666	NA	0	17	10	17
P-0058480-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15297684	15416217	Intron of NOTCH3(-):4bp after exon 12	IGR: 48Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1951+5:NOTCH3_chr19:g.15416217del	PRECISE		MANUAL_OK	3to5	-	118533	NA	0	8	10	8
P-0058518-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72357591	72845716	3-UTR of LINC01572(-):341Kb after coding stop	Intron of ZFHX3(-):40bp before exon 7	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3664-40:ZFHX3_chr16:g.72357591del	PRECISE		MANUAL_OK	3to5	-	488125	NA	0	9	10	11
P-0058524-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62321685	62332302	Exon 26 of RTEL1(+)	Intron of ARFRP1(-):248bp before exon 6	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.2376:RTEL1_chr20:g.62332302del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	10617	NA	0	101	10	104
P-0058526-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28546931	28597510	IGR: 5Kb before URAD(-)	Exon 19 of FLT3(-)	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.2395:FLT3_chr13:g.28546931del	PRECISE		MANUAL_OK	3to5	-	50579	NA	0	72	10	180
P-0004747-T04-IM7	SOMATIC	CD74	ROS1	6	5	117649107	149782562	Intron of ROS1(-):1Kb after exon 32	Intron of CD74(-):121bp after exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782562::chr6:g.117649107)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	78	10	78
P-0055121-T01-IM7	SOMATIC	SH2B3	ATXN2	12	12	111856484	111917898	Exon 2 of SH2B3(+)	Intron of ATXN2(-):5Kb after exon 18	GRCh37	INVERSION	SH2B3 (NM_005475) - ATXN2 (NM_002973) rearrangement: c.535:SH2B3_c.2998+5177:ATXN2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SH2B3:ATXN2}	61414	NA	0	3	8	3
P-0057593-T02-IM7	SOMATIC	LYN	COL25A1	8	4	56879468	109927525	Intron of LYN(+):12bp after exon 9	Intron of COL25A1(-):4Kb after exon 5	GRCh37	TRANSLOCATION	LYN (NM_002350) - COL25A1 (NM_198721) rearrangement: t(4;8)(q25;q12.1)(chr4:g.109927525::chr8:g.56879468)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {LYN:COL25A1}	0	NA	0	33	10	33
P-0058066-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21700632	21994215	IGR: 102Kb before MTAP(+)	Exon 1 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.116:CDKN2A_chr9:g.21700632del	PRECISE		MANUAL_OK	3to5	-	293583	NA	0	9	10	9
P-0058577-T01-IM7	SOMATIC	RPS6KA4	RPS6KA4	11	11	64138200	64141697	Intron of RPS6KA4(+):2bp after exon 16	Promoter of RPS6KA4(+):15Kb from tx start	GRCh37	DELETION	RPS6KA4 (NM_003942) rearrangement: c.2121+2:RPS6KA4_chr11:g.64141697del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3497	NA	0	10	10	16
P-0058579-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739140	1809028	Intron of TACC3(+):85bp after exon 9	3-UTR of FGFR3(+):13Kb after coding stop	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) rearrangement: c.*39:FGFR3_c.1836+85:TACC3dup	PRECISE		MANUAL_OK	5to3	-	69888	NA	0	181	10	232
P-0058582-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29684343	32414909	Intron of EWSR1(+):251bp before exon 9	Intron of WT1(-):608bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414909::chr22:g.29684343)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	27	10	27
P-0058584-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138544222	140491493	Intron of KIAA1549(-):2Kb after exon 16	Intron of BRAF(-):3Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5247+1663:KIAA1549_c.1140+2615:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1947271	NA	0	10	9	10
P-0022156-T03-IM7	SOMATIC	RAD54L	RAD54L	1	1	46731125	46733204	Intron of RAD54L(+):2Kb before exon 10	Exon 10 of RAD54L(+)	GRCh37	DELETION	RAD54L (NM_001142548) rearrangement: c.892-2006_c.965del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2079	NA	0	25	0	27
P-0022156-T03-IM7	SOMATIC	BRCA2	BRCA2	13	13	32910992	32942344	Exon 11 of BRCA2(+)	Intron of BRCA2(+):2Kb before exon 19	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.2500_c.8332-2195del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31352	NA	0	14	10	15
P-0022156-T03-IM7	SOMATIC	POLD1	POLD1	19	19	50915471	50919026	Intron of POLD1(+):1Kb before exon 18	Exon 22 of POLD1(+)	GRCh37	DELETION	POLD1 (NM_002691) rearrangement: c.2155-1212_c.2763del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3555	NA	0	3	7	3
P-0033623-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29687617	32415265	Intron of EWSR1(+):29bp after exon 10	Intron of WT1(-):964bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415265::chr22:g.29687617)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	97	10	96
P-0058302-T02-IM7	SOMATIC	PGR	PGR	17	11	78334094	100912822	Intron of RNF213(+):88bp after exon 38	Exon 7 of PGR(-)	GRCh37	TRANSLOCATION	PGR (NM_000926) rearrangement: t(11;17)(q22.1;q25.3)(chr11:g.100912822::chr17:g.78334094)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	103	10	106
P-0058302-T02-IM7	SOMATIC	ROS1	GRIK2	6	6	102466208	117622188	Intron of GRIK2(+):17Kb before exon 14	Exon 42 of ROS1(-)	GRCh37	INVERSION	ROS1 (NM_002944) - GRIK2 (NM_021956) fusion: c.6682:ROS1_c.2086-17008:GRIK2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ROS1:GRIK2}	15155980	NA	0	341	10	420
P-0058612-T02-IM7	SOMATIC	JUN	JUN	1	1	59171392	59247946	IGR: 51Kb before MYSM1(-)	Exon 1 of JUN(-)	GRCh37	INVERSION	JUN (NM_002228) rearrangement: c.797:JUN_chr1:g.59171392inv	PRECISE		MANUAL_OK	5to5	-	76554	NA	0	41	10	46
P-0058636-T01-IM7	SOMATIC	EP300	EP300	22	22	41537035	41554562	Intron of EP300(+):16bp before exon 10	Intron of EP300(+):58bp after exon 19	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.1879-17_c.3590+58dup	PRECISE		MANUAL_OK	5to3	Duplication of 10 exons : out of frame	17527	NA	0	43	10	45
P-0058652-T01-IM7	SOMATIC	DNAJB1	DNAJB1	19	19	14228967	14627943	Promoter of PRKACA(-):26Kb from tx start	Intron of DNAJB1(-):85bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) rearrangement: c.212-85:DNAJB1_chr19:g.14228967del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {DNAJB1:PRKACA}	398976	NA	0	38	10	38
P-0058655-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47032721	47199868	Intron of RBM10(+):125bp after exon 5	IGR: 30Kb before ZNF157(+)	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.697+125:RBM10_chrX:g.47199868inv	PRECISE		MANUAL_OK	3to3	-	167147	NA	0	28	10	35
P-0058659-T01-IM7	SOMATIC	HORMAD2	TP53BP1	22	15	30546933	43738897	Intron of HORMAD2(+):25Kb before exon 11	Intron of TP53BP1(-):109bp before exon 14	GRCh37	TRANSLOCATION	HORMAD2 (NM_152510) - TP53BP1 (NM_001141980) rearrangement: t(15;22)(q15.3;q12.2)(chr15:g.43738897::chr22:g.30546933)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HORMAD2:TP53BP1}	0	NA	0	28	10	28
P-0058671-T01-IM7	SOMATIC	ARID2	ARID2	12	12	43930425	46254707	Intron of ADAMTS20(-):4Kb before exon 3	Exon 16 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.4897:ARID2_chr12:g.43930425del	PRECISE		MANUAL_OK	3to5	-	2324282	NA	0	95	10	100
P-0058671-T01-IM7	SOMATIC	AXL	AXL	19	19	40265100	41727959	Promoter of LEUTX(+):2Kb from tx start	Exon 4 of AXL(+)	GRCh37	DUPLICATION	AXL (NM_021913) rearrangement: c.584:AXL_chr19:g.40265100dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AXL:LEUTX}	1462859	NA	0	91	10	93
P-0058687-T01-IM7	SOMATIC	RBM5	ERCC2	19	3	45868293	50134296	Intron of ERCC2(-):6bp after exon 6	Intron of RBM5(+):3Kb after exon 4	GRCh37	TRANSLOCATION	RBM5 (NM_005778) - ERCC2 (NM_000400) rearrangement: t(3;19)(p21.31;q13.32)(chr3:g.50134296::chr19:g.45868293)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBM5:ERCC2}	0	NA	0	32	10	32
P-0058761-T01-IM7	SOMATIC	NF1	NF1	17	17	29640273	29654613	Intron of NF1(+):13Kb before exon 36	Exon 37 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4836-12565_c.5365del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14340	NA	0	16	10	26
P-0058778-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99456319	99459689	Exon 8 of IGF1R(+)	Intron of IGF1R(+):211bp before exon 10	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.1636_c.1997-212del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3370	NA	0	19	10	21
P-0057442-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831409	42866507	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):2bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-2:TMPRSS2_c.19-13865:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035098	NA	0	9	10	9
P-0057442-T02-IM7	SOMATIC	HES1	HES1	3	3	193853709	193858251	Promoter of HES1(+):221bp from tx start	Promoter of HES1(+):4Kb from tx start	GRCh37	DELETION	HES1 (NM_005524) rearrangement: c.-461_c.*2229del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4542	NA	0	12	10	12
P-0058234-T02-IM7	SOMATIC	EML4	ALK	2	2	29447241	42506830	Intron of ALK(-):847bp before exon 20	Intron of EML4(+):1Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1160:EML4_c.3173-847:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13059589	NA	0	4	10	5
P-0058415-T01-IM7	SOMATIC	FAT1	FAT1	4	4	83050317	187513843	IGR: 224Kb before HNRNPD(-)	Intron of FAT1(-):3Kb after exon 26	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.13138+3000:FAT1_chr4:g.83050317del	PRECISE		MANUAL_OK	3to5	-	104463526	NA	0	18	10	19
P-0058670-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	15989712	16121856	Exon 23 of NCOR1(-)	Promoter of NCOR1(-):188Kb from tx start	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.3061:NCOR1_chr17:g.16121856del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	132144	NA	0	33	10	34
P-0058670-T01-IM7	SOMATIC	EZH2	EZH2	7	7	148466190	148511829	Intron of CUL1(+):1Kb after exon 9	Intron of EZH2(-):176bp after exon 14	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.1672+177:EZH2_chr7:g.148466190del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	45639	NA	0	7	4	7
P-0058670-T01-IM7	SOMATIC	ARAF	ARAF	X	X	47422427	47482969	Exon 2 of ARAF(+)	Promoter of CFP(-):642bp from tx start	GRCh37	INVERSION	ARAF (NM_001654) rearrangement: c.61:ARAF_chrX:g.47482969inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CFP:ARAF}	60542	NA	0	13	10	16
P-0058695-T01-IM7	SOMATIC	STK11	STK11	19	17	1226583	47032098	Exon 9 of STK11(+)	IGR: 4Kb before GIP(-)	GRCh37	TRANSLOCATION	STK11 (NM_000455) rearrangement: t(17;19)(q21.32;p13.3)(chr17:g.47032098::chr19:g.1226583)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	13	10	13
P-0058704-T01-IM7	SOMATIC	TSC1	TSC1	9	9	135782704	135898525	Exon 13 of TSC1(-)	IGR: 8Kb before GTF3C5(+)	GRCh37	DELETION	TSC1 (NM_000368) rearrangement: c.1317:TSC1_chr9:g.135898525del	PRECISE		MANUAL_OK	3to5	-	115821	NA	0	53	10	54
P-0058705-T01-IM7	SOMATIC	DIS3	DIS3	13	13	73335460	73337131	Intron of DIS3(-):40bp after exon 19	Intron of DIS3(-):457bp after exon 16	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement: c.2127+458_c.2670+41inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1671	NA	0	16	10	16
P-0058705-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2132426	31838220	Intron of TSC2(+):10bp before exon 32	IGR: 47Kb before ZNF267(+)	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.3815-11:TSC2_chr16:g.31838220inv	IMPPRECISE		MANUAL_OK	5to5	-	29705794	NA	0	5	0	9
P-0058732-T01-IM7	SOMATIC	RAD54L	PDXDC1	16	1	15085317	46743573	Intron of PDXDC1(+):6Kb before exon 2	Exon 18 of RAD54L(+)	GRCh37	TRANSLOCATION	RAD54L (NM_001142548) - PDXDC1 (NM_015027) rearrangement: t(1;16)(p34.1;p13.11)(chr1:g.46743573::chr16:g.15085317)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAD54L:PDXDC1}	0	NA	0	17	10	34
P-0058742-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52588970	52694683	Intron of PBRM1(-):75bp before exon 27	Intron of PBRM1(-):1Kb after exon 5	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.528+1466_c.4133-75del	PRECISE		MANUAL_OK	3to5	Deletion of 21 exons : out of frame	105713	NA	0	4	5	4
P-0058775-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41263335	41266289	5-UTR of CTNNB1(+):2Kb before coding start	Intron of CTNNB1(+):45bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.241+45:CTNNB1_chr3:g.41263335del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2954	NA	0	5	10	5
P-0058804-T01-IM7	SOMATIC	INSR	INSR	19	12	7162986	63579024	Intron of INSR(-):56bp after exon 9	IGR: 42Kb before AVPR1A(-)	GRCh37	TRANSLOCATION	INSR (NM_000208) rearrangement: t(12;19)(q14.2;p13.2)(chr12:g.63579024::chr19:g.7162986)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	25
P-0058815-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2126675	2131648	Intron of TSC2(+):89bp after exon 25	Exon 31 of TSC2(+)	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.2837+89_c.3663dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4973	NA	0	21	10	21
P-0058817-T01-IM7	SOMATIC	RIT1	RIT1	1	1	155880261	155885441	Exon 3 of RIT1(-)	Intron of KIAA0907(-):222bp after exon 13	GRCh37	INVERSION	RIT1 (NM_006912) rearrangement: c.143:RIT1_chr1:g.155885441inv	PRECISE		MANUAL_OK	3to3	-	5180	NA	0	28	10	27
P-0058817-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3675308	3843117	IGR: 28Kb before DNASE1(+)	Intron of CREBBP(-):269bp after exon 4	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.1216+270:CREBBP_chr16:g.3675308inv	PRECISE		MANUAL_OK	5to5	-	167809	NA	0	8	5	8
P-0058818-T01-IM7	SOMATIC	SMARCA4	LDLR	19	19	11134394	11211963	Intron of SMARCA4(+):87bp after exon 20	Intron of LDLR(+):942bp after exon 2	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.2973+87:SMARCA4_c.190+942:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SMARCA4:LDLR}	77569	NA	0	67	10	68
P-0058818-T01-IM7	SOMATIC	TPD52	RAD21	8	8	80957774	117878867	Intron of TPD52(-):3Kb before exon 5	Exon 2 of RAD21(-)	GRCh37	DUPLICATION	TPD52 (NM_001025252) - RAD21 (NM_006265) rearrangement: c.507-2871:TPD52_c.102:RAD21dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TPD52:RAD21}	36921093	NA	0	5	5	5
P-0058820-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48590391	48593265	Intron of SMAD4(+):1Kb before exon 9	Intron of SMAD4(+):123bp before exon 10	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.956-1402_c.1140-124inv	PRECISE		MANUAL_OK	5to5	-	2874	NA	1	58	10	58
P-0058822-T01-IM7	SOMATIC	TP53	TP53	17	17	7579495	7581266	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.192:TP53_chr17:g.7581266del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1771	NA	0	104	10	226
P-0008332-T02-IM6	SOMATIC	EML4	ALK	2	2	29446913	42523484	Intron of ALK(-):519bp before exon 20	Intron of EML4(+):828bp after exon 12	GRCh37	DUPLICATION	EML4 (NM_001145076) - ALK (NM_004304) fusion:  c.1315+828:EML4_c.3173-519:ALKdup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	13076571	NA	0	86	10	87
P-0009261-T06-IM6	SOMATIC	TOP1	PLCG1	20	20	39742680	39799024	Exon 15 of TOP1(+)	Intron of PLCG1(+):115bp after exon 24	GRCh37	DELETION	TOP1 (NM_003286) - PLCG1 (NM_002660) rearrangement: c.1523:TOP1_c.2808+115:PLCG1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TOP1:PLCG1}	56344	NA	0	27	10	27
P-0018155-T04-IM7	SOMATIC	RELA	RELA	11	11	65430241	107028753	Intron of RELA(-):55bp after exon 1	IGR: 168Kb before CWF19L2(-)	GRCh37	INVERSION	RELA (NM_021975) rearrangement: c.7+56:RELA_chr11:g.107028753inv	PRECISE		MANUAL_OK	5to5	-	41598512	NA	0	21	10	32
P-0028513-T03-IM7	SOMATIC	MALT1	MALT1	18	18	56363624	56805185	Exon 3 of MALT1(+)	Promoter of SEC11C(+):2Kb from tx start	GRCh37	DUPLICATION	MALT1 (NM_006785) rearrangement: c.403:MALT1_chr18:g.56805185dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC11C:MALT1}	441561	NA	0	112	10	115
P-0030151-T03-IM7	SOMATIC	DOT1L	DOT1L	19	19	2206951	2214035	Intron of DOT1L(+):155bp after exon 10	Intron of DOT1L(+):50bp after exon 18	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.856+155_c.1797+50inv	PRECISE		MANUAL_OK	5to5	-	7084	NA	0	18	10	24
P-0037338-T03-IM6	SOMATIC	DEPDC7	SMARCB1	22	11	24133955	33040227	Exon 2 of SMARCB1(+)	Intron of DEPDC7(+):2Kb after exon 1	GRCh37	TRANSLOCATION	DEPDC7 (NM_001077242) - SMARCB1 (NM_003073) rearrangement: t(11;22)(p13;q11.23)(chr11:g.33040227::chr22:g.24133955)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DEPDC7:SMARCB1}	0	NA	0	65	0	67
P-0037338-T03-IM6	SOMATIC	YES1	ADRBK2	22	18	26044355	742960	Intron of ADRBK2(+):4Kb after exon 3	Exon 8 of YES1(-)	GRCh37	TRANSLOCATION	YES1 (NM_005433) - ADRBK2 (NM_005160) rearrangement: t(18;22)(p11.32;q12.1)(chr18:g.742960::chr22:g.26044355)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {YES1:ADRBK2}	0	NA	0	113	0	141
P-0041118-T07-IM7	SOMATIC	ROS1	CD74	6	5	117648241	149782213	Intron of ROS1(-):664bp before exon 33	Intron of CD74(-):25bp before exon 8	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - CD74 (NM_001025159) rearrangement: t(5;6)(q32;q22.1)(chr5:g.149782213::chr6:g.117648241)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ROS1:CD74}	0	NA	0	6	7	6
P-0050757-T02-IM7	SOMATIC	CTDSP2	HNF1A	12	12	58222712	121438718	Intron of CTDSP2(-):518bp after exon 2	Intron of HNF1A(+):149bp before exon 10	GRCh37	INVERSION	CTDSP2 (NM_005730) - HNF1A (NM_000545) rearrangement: c.213+519:CTDSP2_c.1769-150:HNF1Ainv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CTDSP2:HNF1A}	63216006	NA	0	7	0	7
P-0050757-T02-IM7	SOMATIC	FGFR3	TACC3	4	4	1733009	1808660	Exon 6 of TACC3(+)	Exon 17 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2273:FGFR3_c.1572:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	75651	NA	0	8	10	8
P-0054050-T05-IM7	SOMATIC	NUDCD3	ROS1	7	6	44523353	117645481	Intron of NUDCD3(-):1Kb after exon 2	Intron of ROS1(-):13bp after exon 34	GRCh37	TRANSLOCATION	NUDCD3 (NM_015332) - ROS1 (NM_002944) fusion: t(6;7)(q22.1;p13)(chr6:g.117645481::chr7:g.44523353)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NUDCD3:ROS1}	0	NA	0	17	10	18
P-0056097-T01-IM6	SOMATIC	CDC42	CDC42	1	1	22405179	22451486	Intron of CDC42(+):103bp after exon 2	Intron of WNT4(-):3Kb before exon 3	GRCh37	DELETION	CDC42 (NM_001791) rearrangement: c.105+103:CDC42_chr1:g.22451486del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	46307	NA	0	2	8	3
P-0056097-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36228893	36232316	Intron of KMT2B(+):50bp after exon 35	Promoter of KMT2B(+):23Kb from tx start	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.7742+50:KMT2B_chr19:g.36232316del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3423	NA	0	11	10	14
P-0056097-T01-IM6	SOMATIC	TFG	ALK	3	2	100456163	29447896	Intron of TFG(+):603bp after exon 6	Intron of ALK(-):430bp after exon 19	GRCh37	TRANSLOCATION	TFG (NM_001195478) - ALK (NM_004304) rearrangement: t(2;3)(p23.2;q12.2)(chr2:g.29447896::chr3:g.100456163)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TFG:ALK}	0	NA	0	25	10	23
P-0057229-T02-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	67200405	67910084	Intron of RPS6KB2(+):17bp before exon 8	IGR: 12Kb before SUV420H1(-)	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.617-18:RPS6KB2_chr11:g.67910084del	PRECISE		MANUAL_OK	3to5	-	709679	NA	0	59	10	102
P-0057247-T02-IM7	SOMATIC	FGFR2	PRDX3	10	10	120937980	123242894	Intron of PRDX3(-):286bp after exon 1	Intron of FGFR2(-):317bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) - PRDX3 (NM_006793) fusion: c.2301+318:FGFR2_c.36+287:PRDX3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:PRDX3}	2304914	NA	0	24	0	66
P-0057247-T02-IM7	SOMATIC	STAG2	STAG2	X	X	123223571	123224898	Intron of STAG2(+):853bp before exon 31	Intron of STAG2(+):84bp after exon 32	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.3278-854_c.3578+84dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1327	NA	0	11	0	11
P-0058416-T01-IM7	SOMATIC	MSI2	MSI2	17	3	55335114	88742946	Intron of MSI2(+):206bp after exon 3	IGR: 414Kb before EPHA3(+)	GRCh37	TRANSLOCATION	MSI2 (NM_138962) rearrangement: t(3;17)(p11.1;q22)(chr3:g.88742946::chr17:g.55335114)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	13
P-0058419-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	206661142	206665147	Intron of IKBKE(+):108bp before exon 16	Intron of IKBKE(+):65bp after exon 18	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement: c.1617-109_c.1835+65inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4005	NA	0	23	10	23
P-0058768-T01-IM7	SOMATIC	ROS1	ROS1	20	6	43955067	117646105	3-UTR of SDC4(-):836bp after coding stop	Intron of ROS1(-):527bp before exon 34	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;20)(q22.1;q13.12)(chr6:g.117646105::chr20:g.43955067)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	15
P-0058771-T01-IM7	SOMATIC	PPP1R10	MDC1	6	6	30570167	30674070	Exon 19 of PPP1R10(-)	Intron of MDC1(-):195bp before exon 10	GRCh37	DUPLICATION	PPP1R10 (NM_002714) - MDC1 (NM_014641) rearrangement: c.2259:PPP1R10_c.3085-195:MDC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PPP1R10:MDC1}	103903	NA	0	22	10	22
P-0058845-T01-IM7	SOMATIC	CTNNB1	LIN9	3	1	41268955	226439005	Intron of CTNNB1(+):112bp after exon 7	Intron of LIN9(-):385bp before exon 11	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) - LIN9 (NM_173083) rearrangement: t(1;3)(q42.12;p22.1)(chr1:g.226439005::chr3:g.41268955)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CTNNB1:LIN9}	0	NA	0	19	10	31
P-0058847-T01-IM7	SOMATIC	LRP1	NAB2	12	12	57486722	57575759	Exon 4 of NAB2(+)	Intron of LRP1(+):685bp after exon 34	GRCh37	DUPLICATION	LRP1 (NM_002332) - NAB2 (NM_005967) rearrangement: c.5662+685:LRP1_c.1114:NAB2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LRP1:NAB2}	89037	NA	0	10	0	10
P-0058848-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55204571	55223455	Intron of EGFR(+):5Kb before exon 2	Intron of EGFR(+):67bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-5408_c.890-68del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	18884	NA	0	94	0	651
P-0058848-T01-IM7	SOMATIC	TRAF2	CACNA1B	9	9	139815831	141001344	Intron of TRAF2(+):164bp after exon 9	Intron of CACNA1B(+):1Kb after exon 38	GRCh37	DELETION	TRAF2 (NM_021138) - CACNA1B (NM_000718) rearrangement: c.1138+164:TRAF2_c.5428+1085:CACNA1Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRAF2:CACNA1B}	1185513	NA	0	8	10	8
P-0058856-T01-IM7	SOMATIC	CAMK1D	GATA3	10	10	8115921	12447861	Exon 6 of GATA3(+)	Intron of CAMK1D(+):56Kb after exon 1	GRCh37	DUPLICATION	CAMK1D (NM_153498) - GATA3 (NM_002051) rearrangement: c.92+55952:CAMK1D_c.1267:GATA3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CAMK1D:GATA3}	4331940	NA	0	29	10	31
P-0058859-T01-IM7	SOMATIC	SUZ12	SUZ12	17	17	28067931	30322580	Intron of SSH2(-):38Kb before exon 3	Intron of SUZ12(+):2bp before exon 14	GRCh37	DELETION	SUZ12 (NM_015355) rearrangement: c.1596-3:SUZ12_chr17:g.28067931del	PRECISE		MANUAL_OK	3to5	-	2254649	NA	0	13	10	14
P-0058859-T01-IM7	SOMATIC	STK11	STK11	19	19	1218957	1220178	Intron of STK11(+):365bp before exon 3	Intron of STK11(+):193bp before exon 4	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.375-366_c.465-194del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1221	NA	0	8	9	8
P-0058867-T01-IM7	SOMATIC	CD74	NRG1	8	5	32565439	149783529	Intron of NRG1(+):20Kb before exon 6	Intron of CD74(-):654bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783529::chr8:g.32565439)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD74:NRG1}	0	NA	0	19	10	25
P-0058869-T01-IM7	SOMATIC	PPARG	PPARG	3	3	12173300	12458524	Intron of SYN2(+):9Kb before exon 3	Exon 6 of PPARG(+)	GRCh37	INVERSION	PPARG (NM_015869) rearrangement: c.1141:PPARG_chr3:g.12173300inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	285224	NA	0	5	0	5
P-0035163-T02-IM7	SOMATIC	CD274	CD274	14	9	23624005	5467052	Intron of SLC7A8(-):10Kb after exon 3	Intron of CD274(+):223bp after exon 6	GRCh37	TRANSLOCATION	CD274 (NM_014143) rearrangement: t(9;14)(p24.1;q11.2)(chr9:g.5467052::chr14:g.23624005)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	65	10	65
P-0040320-T04-IM7	SOMATIC	CD79A	CD79A	19	19	42383743	45051809	Intron of CD79A(+):20bp after exon 3	3-UTR of CEACAM22P(-):8Kb after coding stop	GRCh37	DELETION	CD79A (NM_001783) rearrangement: c.498+20:CD79A_chr19:g.45051809del	IMPPRECISE		MANUAL_OK	3to5	-	2668066	NA	0	20	0	21
P-0055733-T02-IM7	SOMATIC	EWSR1	ERG	22	21	29684335	39771400	Intron of EWSR1(+):259bp before exon 9	Intron of ERG(-):1Kb after exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39771400::chr22:g.29684335)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	NA	0	9	9	9
P-0058293-T02-IM7	SOMATIC	TP53	TP53	17	17	7579152	7590879	Intron of TP53(-):159bp after exon 4	Promoter of TP53(-):19Kb from tx start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.375+160:TP53_chr17:g.7590879del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	11727	NA	0	7	10	7
P-0058599-T02-IM7	SOMATIC	EML4	ALK	2	2	29446415	42527036	Intron of ALK(-):21bp before exon 20	Intron of EML4(+):1Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1345:EML4_c.3173-21:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080621	NA	0	51	10	57
P-0058621-T02-IM7	SOMATIC	ERCC3	ERCC3	2	2	128015349	133139299	Intron of ERCC3(-):46bp before exon 15	IGR: 35Kb before GPR39(+)	GRCh37	INVERSION	ERCC3 (NM_000122) rearrangement: c.2218-46:ERCC3_chr2:g.133139299inv	PRECISE		MANUAL_OK	3to3	-	5123950	NA	0	4	5	4
P-0058909-T01-IM7	SOMATIC	CARM1	CARM1	19	19	9478752	11022801	5-UTR of ZNF559-ZNF177(+):10Kb before coding start	Intron of CARM1(+):58bp before exon 5	GRCh37	INVERSION	CARM1 (NM_199141) rearrangement: c.559-59:CARM1_chr19:g.9478752inv	PRECISE		MANUAL_OK	5to5	-	1544049	NA	0	11	10	13
P-0058951-T01-IM7	SOMATIC	AKAP9	MET	7	7	91720368	116412334	Intron of AKAP9(+):2Kb after exon 38	Intron of MET(+):291bp after exon 14	GRCh37	DELETION	AKAP9 (NM_005751) - MET (NM_000245) fusion: c.9358+1525:AKAP9_c.3028+291:METdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AKAP9:MET}	24691966	NA	0	55	10	56
P-0058957-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39804701	42871565	Intron of ERG(-):9Kb before exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1449:TMPRSS2_c.237-9218:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3066864	NA	0	60	10	62
P-0058971-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55179130	55222529	Intron of EGFR(+):31Kb before exon 2	Intron of EGFR(+):684bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-30849_c.889+684del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	43399	NA	0	321	0	3763
P-0058975-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52637516	52653772	Intron of PBRM1(-):20bp after exon 18	Intron of PBRM1(-):2Kb before exon 15	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1542-2218_c.2779+21del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	16256	NA	0	7	10	7
P-0010497-T01-IM5	SOMATIC	EP300	EP300	22	22	41537169	41694128	Exon 10 of EP300(+)	IGR: 3Kb before ZC3H7B(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement : c.1996:EP300_chr22:g.41694128del	PRECISE		MANUAL_OK	3to5	-	156959	NA	0	6	13	6
P-0014908-T01-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64043012	64137082	Intron of BAD(-): 4Kb before exon 2	Exon 13 of RPS6KA4(+)	GRCh37	DUPLICATION	RPS6KA4 (NM_003942) Rearrangement : c.188-3737:BAD_ c.1593:RPS6KA4dup	PRECISE		MANUAL_OK	5to3	Antisense fusion	94070	NA	0	29	81	29
P-0045909-T02-IM6	SOMATIC	ASXL2	ASXL2	2	2	25966354	26031019	Exon 12 of ASXL2(-)	Intron of ASXL2(-):2Kb before exon 3	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.144-1813_c.2852del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	64665	NA	0	40	10	42
P-0049078-T04-IM6	SOMATIC	TPM3	NTRK1	1	1	154136376	156843537	Intron of TPM3(-):6Kb before exon 7	Exon 8 of NTRK1(+)	GRCh37	INVERSION	TPM3 (NM_001278190) - NTRK1 (NM_002529)  fusion: c.395-6179:TPM3_ c.963:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPM3:NTRK1}	2707161	NA	0	68	10	88
P-0051577-T02-IM7	SOMATIC	NKX3	KCNU1	8	8	23539154	36918959	Intron of NKX3-1(-):2bp before exon 2	IGR: 277Kb before KCNU1(+)	GRCh37	DELETION	NKX3-1 (NM_006167) rearrangement: c.287-2:NKX3-1_chr8:g.36918959del	PRECISE		MANUAL_OK	3to5	-	13379805	NA	0	7	10	7
P-0058539-T01-IM6	SOMATIC	FGFR2	FOXP1	10	3	123239434	71113500	Exon 18 of FGFR2(-)	Intron of FOXP1(-):11Kb before exon 4	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - FOXP1 (NM_001244814) fusion: t(3;10)(p13;q26.13)(chr3:g.71113500::chr10:g.123239434)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR2:FOXP1}	0	NA	0	35	10	35
P-0058806-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41265691	41266292	Intron of CTNNB1(+):119bp after exon 2	Intron of CTNNB1(+):48bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.13+119_c.241+48del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	601	NA	0	43	0	47
P-0058807-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	140672710	149509432	IGR: 9Kb before SLC25A2(-)	Exon 10 of PDGFRB(-)	GRCh37	INVERSION	PDGFRB (NM_002609) rearrangement: c.1467:PDGFRB_chr5:g.140672710inv	PRECISE		MANUAL_OK	5to5	-	8836722	NA	0	12	10	13
P-0058807-T01-IM7	SOMATIC	KDM5C	KDM5C	X	12	53225912	39668232	Exon 19 of KDM5C(-)	IGR: 19Kb before KIF21A(-)	GRCh37	TRANSLOCATION	KDM5C (NM_004187) rearrangement: t(12;X)(q12;p11.22)(chr12:g.39668232::chrX:g.53225912)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	35	10	36
P-0058855-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8461135	8507584	Intron of PTPRD(-):564bp before exon 33	Intron of PTPRD(-):150bp before exon 22	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.1544-150_c.3715-564dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	46449	NA	0	53	10	57
P-0058858-T01-IM7	SOMATIC	BZRAP1	RNF43	17	17	56388391	56492903	Exon 19 of BZRAP1(-)	Exon 2 of RNF43(-)	GRCh37	DUPLICATION	BZRAP1 (NM_004758) - RNF43 (NM_017763) rearrangement: c.3265:BZRAP1_c.36:RNF43dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BZRAP1:RNF43}	104512	NA	0	5	10	6
P-0017163-T02-IM7	SOMATIC	EWSR1	EWSR1	22	22	29684422	29782804	Intron of EWSR1(+):172bp before exon 9	5-UTR of AP1B1(-):58Kb before coding start	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.812-173:EWSR1_chr22:g.29782804dup	PRECISE		MANUAL_OK	5to3	-	98382	NA	0	82	10	111
P-0030527-T03-IM7	SOMATIC	IRS2	IRS2	13	13	110436946	110437925	Exon 1 of IRS2(-)	Exon 1 of IRS2(-)	GRCh37	INVERSION	IRS2 (NM_003749) rearrangement: c.476_c.1455inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	979	NA	0	17	0	17
P-0030527-T03-IM7	SOMATIC	JAK3	JAK3	19	19	17950568	17951572	Intron of JAK3(-):96bp before exon 10	Intron of JAK3(-):422bp before exon 9	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.1143-422_c.1255-96inv	PRECISE		MANUAL_OK	3to3	-	1004	NA	0	11	10	11
P-0033800-T01-IM6	SOMATIC	SPEN	DDI2	1	1	15966805	16255727	Intron of DDI2(+):2Kb after exon 5	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - DDI2 (NM_032341) rearrangement: c.2992:SPEN_c.760+1876:DDI2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:DDI2}	288922	NA	0	5	10	6
P-0050757-T03-IM7	SOMATIC	CTDSP2	HNF1A	12	12	58222712	121438683	Intron of CTDSP2(-):518bp after exon 2	Intron of HNF1A(+):184bp before exon 10	GRCh37	INVERSION	CTDSP2 (NM_005730) - HNF1A (NM_000545) rearrangement: c.213+519:CTDSP2_c.1769-185:HNF1Ainv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CTDSP2:HNF1A}	63215971	NA	0	6	0	6
P-0050757-T03-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15284547	15297640	Intron of NOTCH3(-):331bp after exon 25	Intron of NOTCH3(-):48bp after exon 12	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1951+49_c.4736+332del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	13093	NA	0	5	0	7
P-0055362-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	3922745	10251832	Intron of ATCAY(+):2Kb before exon 13	Exon 30 of DNMT1(-)	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.3295:DNMT1_chr19:g.3922745del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	6329087	NA	0	37	10	38
P-0055362-T01-IM6	SOMATIC	PTPRS	PPAN	19	19	5231516	10222151	Exon 14 of PTPRS(-)	Intron of PPAN-P2RY11(+):391bp after exon 12	GRCh37	INVERSION	PTPRS (NM_002850) - PPAN-P2RY11 (NM_001040664) rearrangement: c.1960:PTPRS_c.1279+453:PPAN-P2RY11inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PTPRS:PPAN-P2RY11}	4990635	NA	0	30	10	36
P-0055899-T01-IM6	SOMATIC	CYLD	CYLD	16	11	50788297	91448261	Exon 5 of CYLD(+)	IGR: 637Kb before FAT3(+)	GRCh37	TRANSLOCATION	CYLD (NM_001042355) rearrangement: t(11;16)(q14.3;q12.1)(chr11:g.91448261::chr16:g.50788297)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	99	10	130
P-0056931-T01-IM6	SOMATIC	EP300	EP300	22	14	41523538	75454051	Exon 4 of EP300(+)	IGR: 16Kb before EIF2B2(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(14;22)(q24.3;q13.2)(chr14:g.75454051::chr22:g.41523538)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	86	10	124
P-0056931-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52695718	52696241	Intron of PBRM1(-):430bp after exon 5	Exon 5 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.436_c.528+431del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	523	NA	0	4	5	4
P-0058481-T01-IM7	SOMATIC	RTEL1	RTEL1	20	20	62312567	62317014	Intron of RTEL1(+):495bp after exon 14	Intron of RTEL1(+):64bp after exon 15	GRCh37	DUPLICATION	RTEL1 (NM_032957) rearrangement: c.1263+495_c.1338+64dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	4447	NA	0	23	10	23
P-0058643-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	3	22008800	100468469	Exon 1 of CDKN2B(-)	3-UTR of ABI3BP(-):869bp after coding stop	GRCh37	TRANSLOCATION	CDKN2B (NM_004936) rearrangement: t(3;9)(q12.2;p21.3)(chr3:g.100468469::chr9:g.22008800)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	14	10	14
P-0058800-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89709882	89711897	Intron of PTEN(+):2Kb before exon 6	Exon 6 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.493-1993_c.515del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2015	NA	0	16	10	20
P-0058992-T01-IM7	SOMATIC	AURKA	AURKA	20	6	54945217	68142795	Exon 9 of AURKA(-)	IGR: 622Kb before LOC102723883(+)	GRCh37	TRANSLOCATION	AURKA (NM_003600) rearrangement: t(6;20)(q12;q13.2)(chr6:g.68142795::chr20:g.54945217)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	14	0	20
P-0058997-T01-IM7	SOMATIC	NBN	NBN	8	8	90983501	110691020	Exon 6 of NBN(-)	5-UTR of SYBU(-):104Kb before coding start	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.602:NBN_chr8:g.110691020inv	PRECISE		MANUAL_OK	3to3	-	19707519	NA	0	9	10	9
P-0059001-T01-IM7	SOMATIC	PICALM	INSR	19	11	7152734	85765921	Intron of INSR(-):2bp after exon 10	Intron of PICALM(-):14Kb after exon 1	GRCh37	TRANSLOCATION	PICALM (NM_007166) - INSR (NM_000208) rearrangement: t(11;19)(q14.2;p13.2)(chr11:g.85765921::chr19:g.7152734)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PICALM:INSR}	0	NA	0	323	10	374
P-0059001-T01-IM7	SOMATIC	DNM2	NOTCH3	19	19	10836470	15300018	Intron of DNM2(+):7Kb after exon 1	Intron of NOTCH3(-):33bp before exon 8	GRCh37	INVERSION	DNM2 (NM_001005361) - NOTCH3 (NM_000435) rearrangement: c.161+7391:DNM2_c.1193-33:NOTCH3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {DNM2:NOTCH3}	4463548	NA	0	328	10	702
P-0059001-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	35857380	36259395	5-UTR of KCNE1(-):36Kb before coding start	Intron of RUNX1(-):2bp before exon 4	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.98-2:RUNX1_chr21:g.35857380del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {RUNX1:KCNE1}	402015	NA	0	7	10	7
P-0059002-T01-IM7	SOMATIC	OSBPL7	BRAF	17	7	45890381	140491530	Intron of OSBPL7(-):250bp after exon 16	Intron of BRAF(-):3Kb after exon 8	GRCh37	TRANSLOCATION	OSBPL7 (NM_145798) - BRAF (NM_004333) fusion: t(7;17)(q34;q21.32)(chr7:g.140491530::chr17:g.45890381)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {OSBPL7:BRAF}	0	NA	0	53	10	56
P-0059032-T01-IM7	SOMATIC	PLOD3	EGFR	7	7	55179084	100849726	Intron of EGFR(+):31Kb before exon 2	Intron of PLOD3(-):9bp before exon 19	GRCh37	INVERSION	PLOD3 (NM_001084) - EGFR (NM_005228) fusion: c.2062-9:PLOD3_c.89-30895:EGFRinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PLOD3:EGFR}	45670642	NA	0	5	0	5
P-0059037-T01-IM7	SOMATIC	DNMT3B	DNMT3B	20	20	31379431	52482301	Exon 8 of DNMT3B(+)	IGR: 9Kb before SUMO1P1(-)	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.838:DNMT3B_chr20:g.52482301inv	PRECISE		MANUAL_OK	5to5	-	21102870	NA	0	12	10	15
P-0059038-T01-IM7	SOMATIC	BBC3	SAE1	19	19	47679193	47731717	Intron of SAE1(+):6Kb after exon 6	Intron of BBC3(-):14bp before exon 2	GRCh37	INVERSION	BBC3 (NM_001127240) - SAE1 (NM_005500) rearrangement: c.89-14:BBC3_c.733+6013:SAE1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BBC3:SAE1}	52524	NA	0	35	10	47
P-0059038-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55124965	55221896	Intron of EGFR(+):38Kb after exon 1	Intron of EGFR(+):51bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+37907_c.889+51del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	96931	NA	0	98	0	561
P-0059047-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12013221	12032597	Intron of MAP2K4(+):470bp before exon 6	Exon 9 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.634-471_c.1033del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19376	NA	0	25	10	26
P-0059050-T01-IM7	SOMATIC	NTRK3	NTRK3	15	6	88727697	139618694	Intron of NTRK3(-):167bp before exon 4	IGR: 57Kb before TXLNB(-)	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(6;15)(q24.1;q25.3)(chr6:g.139618694::chr15:g.88727697)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	10
P-0059053-T01-IM7	SOMATIC	NTRK1	NTRK1	1	1	156841914	156909586	Intron of NTRK1(+):367bp after exon 7	Exon 36 of ARHGEF11(-)	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.850+367:NTRK1_chr1:g.156909586del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	67672	NA	0	8	10	8
P-0059053-T01-IM7	SOMATIC	INPPL1	INPPL1	11	11	71731802	71944017	Intron of NUMA1(-):447bp after exon 8	Exon 16 of INPPL1(+)	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.1950:INPPL1_chr11:g.71731802del	PRECISE		MANUAL_OK	3to5	-	212215	NA	0	27	10	41
P-0059054-T01-IM7	SOMATIC	ATM	ATM	11	11	108205850	108206919	Intron of ATM(+):14bp after exon 55	Intron of ATM(+):231bp after exon 56	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.8151+14_c.8268+231del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1069	NA	0	8	10	13
P-0059049-T01-IM7	SOMATIC	RAD52	RAD52	12	12	1036420	1510113	Exon 6 of RAD52(-)	Intron of ERC1(+):7Kb before exon 16	GRCh37	DELETION	RAD52 (NM_134424) rearrangement: c.358:RAD52_chr12:g.1510113del	PRECISE		MANUAL_OK	3to5	-	473693	NA	0	28	10	55
P-0059049-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2097931	2099365	Promoter of TSC2(+):58bp from tx start	Intron of TSC2(+):611bp after exon 2	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.138+611:TSC2_chr16:g.2097931del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1434	NA	0	56	10	63
P-0057389-T02-IM7	SOMATIC	RNF43	RNF43	17	17	56437796	56444359	Intron of RNF43(-):184bp before exon 8	Intron of RNF43(-):3Kb before exon 4	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.376-3398_c.850-184del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	6563	NA	0	49	10	56
P-0057389-T02-IM7	SOMATIC	TERT	TERT	5	5	1296388	1297735	Promoter of TERT(-):43Kb from tx start	Promoter of TERT(-):44Kb from tx start	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-2631_c.-1284del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1347	NA	0	131	0	142
P-0059111-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39728883	39729849	Exon 12 of TOP1(+)	Exon 13 of TOP1(+)	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.1163_c.1164del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	966	NA	0	5	10	5
P-0059111-T01-IM7	SOMATIC	RASA1	RASA1	5	5	86633743	86637192	Intron of RASA1(+):47bp before exon 5	Intron of RASA1(+):54bp after exon 6	GRCh37	INVERSION	RASA1 (NM_002890) rearrangement: c.900-48_c.1049+54inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3449	NA	0	4	8	4
P-0059113-T01-IM7	SOMATIC	TSC2	EML3	16	11	2135083	62373324	Intron of TSC2(+):56bp after exon 35	Intron of EML3(-):2bp after exon 14	GRCh37	TRANSLOCATION	TSC2 (NM_000548) - EML3 (NM_153265) rearrangement: t(11;16)(q12.3;p13.3)(chr11:g.62373324::chr16:g.2135083)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TSC2:EML3}	0	NA	0	21	10	21
P-0059113-T01-IM7	SOMATIC	TSPAN16	SMARCA4	19	19	11098510	11420462	Exon 6 of SMARCA4(+)	Intron of TSPAN16(+):2Kb before exon 5	GRCh37	DUPLICATION	TSPAN16 (NM_012466) - SMARCA4 (NM_003072) rearrangement: c.604-2353:TSPAN16_c.1028:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TSPAN16:SMARCA4}	321952	NA	0	40	10	40
P-0059117-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57488448	57501066	Exon 7 of NAB2(+)	Exon 4 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1522:NAB2_c.287:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	12618	NA	0	119	10	119
P-0059133-T01-IM7	SOMATIC	TERT	TERT	5	5	1296054	9307661	Promoter of TERT(-):43Kb from tx start	Intron of SEMA5A(-):11Kb after exon 5	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-950:TERT_c.270+10823:SEMA5Adel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SEMA5A:TERT}	8011607	NA	0	53	10	56
P-0059139-T01-IM7	SOMATIC	EML4	NTRK1	2	1	42473987	156844256	Intron of EML4(+):1Kb after exon 2	Intron of NTRK1(+):64bp after exon 9	GRCh37	TRANSLOCATION	EML4 (NM_019063) - NTRK1 (NM_002529) fusion: t(1;2)(q23.1;p21)(chr1:g.156844256::chr2:g.42473987)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EML4:NTRK1}	0	NA	0	122	10	123
P-0059142-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	122998289	123240809	IGR: 240Kb before FGFR2(-)	Intron of FGFR2(-):1Kb before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2302-1274:FGFR2_chr10:g.122998289inv	PRECISE		MANUAL_OK	5to5	-	242520	NA	0	14	10	17
P-0059142-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21931120	22007220	IGR: 36Kb before CDKN2A-AS1(+)	Intron of CDKN2B(-):974bp before exon 2	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.157-974:CDKN2B_chr9:g.21931120del	PRECISE		MANUAL_OK	3to5	-	76100	NA	0	5	8	5
P-0059143-T01-IM7	SOMATIC	EWSR1	FLI1	22	11	29684654	128660670	Exon 9 of EWSR1(+)	Intron of FLI1(+):9Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128660670::chr22:g.29684654)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	NA	0	19	10	21
P-0059163-T01-IM7	SOMATIC	LIN9	PARP1	1	1	226487209	226556167	Intron of LIN9(-):2Kb after exon 2	Intron of PARP1(-):145bp before exon 16	GRCh37	DUPLICATION	LIN9 (NM_173083) - PARP1 (NM_001618) rearrangement: c.112+1665:LIN9_c.2155-145:PARP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LIN9:PARP1}	68958	NA	0	7	9	10
P-0059163-T01-IM7	SOMATIC	XPO1	XPO1	2	2	61742774	61753559	Intron of XPO1(-):7Kb after exon 4	Exon 3 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.224_c.301+6972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10785	NA	0	52	10	97
P-0059163-T01-IM7	SOMATIC	TSC1	TSC1	9	1	135779292	56602679	Intron of TSC1(-):88bp before exon 17	IGR: 358Kb before PPAP2B(-)	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(1;9)(p32.2;q34.13)(chr1:g.56602679::chr9:g.135779292)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	46	10	34
P-0059172-T01-IM7	SOMATIC	MET	MET	7	6	116414437	32547148	Intron of MET(+):497bp before exon 15	Intron of HLA-DRB1(-):267bp before exon 6	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32547148::chr7:g.116414437)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {HLA-DRB1:MET}	0	NA	0	26	10	26
P-0057563-T01-IM7	SOMATIC	GATA3	GATA3	10	10	8105912	8144572	Intron of GATA3(+):46bp before exon 4	IGR: 48Kb before GATA3(+)	GRCh37	DUPLICATION	GATA3 (NM_002051) rearrangement: c.779-47:GATA3_chr10:g.8144572dup	PRECISE		MANUAL_OK	5to3	-	38660	NA	0	22	10	25
P-0057563-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71015020	71429666	Intron of FOXP1(-):20bp after exon 16	5-UTR of FOXP1(-):421Kb before coding start	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1889+21:FOXP1_chr3:g.71429666del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	414646	NA	0	8	10	8
P-0059070-T01-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	67202581	87591758	Exon 15 of RPS6KB2(+)	IGR: 255Kb before RAB38(-)	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.1390:RPS6KB2_chr11:g.87591758inv	PRECISE		MANUAL_OK	3to3	-	20389177	NA	0	46	10	46
P-0059074-T01-IM7	SOMATIC	TBX3	ARID1A	12	1	115118676	27098883	Intron of TBX3(-):7bp after exon 2	Intron of ARID1A(+):107bp before exon 13	GRCh37	TRANSLOCATION	TBX3 (NM_016569) - ARID1A (NM_006015) rearrangement: t(1;12)(p36.11;q24.21)(chr1:g.27098883::chr12:g.115118676)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TBX3:ARID1A}	0	NA	0	98	10	108
P-0059077-T01-IM7	SOMATIC	PDCD1LG2	PDCD1LG2	9	9	5549208	5631509	Intron of PDCD1LG2(+):126bp before exon 4	Intron of RIC1(+):2Kb after exon 1	GRCh37	INVERSION	PDCD1LG2 (NM_025239) rearrangement: c.362-127:PDCD1LG2_chr9:g.5631509inv	PRECISE		MANUAL_OK	5to5	-	82301	NA	0	5	10	5
P-0059077-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8413457	8449884	Intron of PTPRD(-):9Kb before exon 36	Intron of PTPRD(-):47bp before exon 34	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.3876-47_c.4087-8797inv	PRECISE		MANUAL_OK	3to3	-	36427	NA	0	26	10	26
P-0059078-T01-IM7	SOMATIC	FLT3	FLT3	13	13	28590801	28592606	Intron of FLT3(-):963bp before exon 21	Exon 20 of FLT3(-)	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.2539_c.2542-963del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1805	NA	0	52	10	54
P-0059078-T01-IM7	SOMATIC	RB1	RB1	16	13	11077813	48937218	Intron of CLEC16A(+):965bp after exon 9	Intron of RB1(+):125bp after exon 8	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;16)(q14.2;p13.13)(chr13:g.48937218::chr16:g.11077813)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	24	10	21
P-0059191-T01-IM7	SOMATIC	POLE	POLE	12	10	133253931	12239955	Intron of POLE(-):17bp after exon 8	Intron of CDC123(+):748bp before exon 2	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(10;12)(p13;q24.33)(chr10:g.12239955::chr12:g.133253931)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	37	10	37
P-0059191-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39868045	42861642	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):122bp before exon 4	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+2242:ERG_c.350-122:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERG:TMPRSS2}	2993597	NA	0	11	8	12
P-0059195-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1737407	1808841	Intron of TACC3(+):50bp before exon 8	Intron of FGFR3(+):1bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-2:FGFR3_c.1645-51:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71434	NA	0	15	10	15
P-0059206-T01-IM7	SOMATIC	INSR	GALP	19	19	7142948	56689080	Exon 12 of INSR(-)	Intron of GALP(+):516bp after exon 2	GRCh37	INVERSION	INSR (NM_000208) - GALP (NM_033106) rearrangement: c.2421:INSR_c.87+516:GALPinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {INSR:GALP}	49546132	NA	0	17	10	20
P-0059208-T01-IM7	SOMATIC	STAT3	STAT3	17	17	40475343	67237645	Exon 19 of STAT3(-)	5-UTR of ABCA10(-):93Kb before coding start	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.1683:STAT3_chr17:g.67237645dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STAT3:ABCA10}	26762302	NA	0	5	10	5
P-0059208-T01-IM7	SOMATIC	TMPRSS2	DYRK1A	21	21	38874981	42867955	Intron of DYRK1A(+):3Kb before exon 9	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - DYRK1A (NM_001396) rearrangement: c.127-1450:TMPRSS2_c.1240-2605:DYRK1Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TMPRSS2:DYRK1A}	3992974	NA	0	50	10	53
P-0059222-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55179752	55222163	Intron of EGFR(+):30Kb before exon 2	Intron of EGFR(+):318bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-30227_c.889+318del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	42411	NA	0	172	10	180
P-0059222-T01-IM7	SOMATIC	GBAS	EGFR	7	7	55233046	56033111	Exon 15 of EGFR(+)	Intron of GBAS(+):717bp after exon 1	GRCh37	DUPLICATION	GBAS (NM_001483) - EGFR (NM_005228) fusion: c.92+717:GBAS_c.1796:EGFRdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GBAS:EGFR}	800065	NA	0	15	10	15
P-0059227-T01-IM7	SOMATIC	AXL	AXL	19	19	41738913	41744266	Intron of AXL(+):2Kb after exon 6	Intron of AXL(+):108bp before exon 8	GRCh37	DUPLICATION	AXL (NM_021913) rearrangement: c.783+1710_c.995-109dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	5353	NA	0	6	10	5
P-0059229-T01-IM7	SOMATIC	CIC	CIC	19	19	42787029	42795257	Promoter of CIC(+):2Kb from tx start	Exon 10 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.2337:CIC_chr19:g.42787029del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8228	NA	0	11	10	11
P-0059230-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67591473	67599611	Intron of PIK3R1(+):157bp after exon 14	Promoter of PIK3R1(+):88Kb from tx start	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1814+157:PIK3R1_chr5:g.67599611del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	8138	NA	0	41	10	48
P-0059337-T01-IM7	SOMATIC	PDGFRA	PDGFRA	4	4	55140080	61469771	Intron of PDGFRA(+):183bp after exon 10	IGR: 893Kb before LPHN3(+)	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.1558+183:PDGFRA_chr4:g.61469771del	PRECISE		MANUAL_OK	3to5	-	6329691	NA	0	10	10	10
P-0033884-T03-IM7	SOMATIC	STK11	STK11	19	19	1220496	1222339	Exon 4 of STK11(+)	Intron of STK11(+):334bp after exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.589_c.920+334del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1843	NA	0	106	10	115
P-0055640-T02-IM7	SOMATIC	SOX17	SOX17	8	8	55370805	128299009	Exon 1 of SOX17(+)	5-UTR of CASC21(+):106Kb before coding start	GRCh37	DELETION	SOX17 (NM_022454) rearrangement: c.107:SOX17_chr8:g.128299009del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SOX17:CASC21}	72928204	NA	0	7	10	11
P-0056466-T02-IM7	SOMATIC	RUNX1	RUNX1	21	21	36164794	36439105	Exon 9 of RUNX1(-)	IGR: 29Kb before RUNX1-IT1(-)	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.1081:RUNX1_chr21:g.36439105del	IMPPRECISE		MANUAL_OK	3to5	-	274311	NA	0	6	0	6
P-0056466-T02-IM7	SOMATIC	KDM6A	KDM6A	X	X	44731976	44733078	Promoter of KDM6A(+):444bp from tx start	Intron of KDM6A(+):91bp before exon 2	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.162-92:KDM6A_chrX:g.44731976del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	1102	NA	0	85	0	86
P-0059084-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72822020	72825998	Exon 10 of ZFHX3(-)	Intron of ZFHX3(-):1Kb after exon 9	GRCh37	DUPLICATION	ZFHX3 (NM_006885) rearrangement: c.9427+1156_c.10155dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3978	NA	0	7	10	7
P-0059084-T01-IM7	SOMATIC	RAD21	RAD21	8	8	117878860	117896062	Exon 2 of RAD21(-)	IGR: 9Kb before MIR3610(-)	GRCh37	DELETION	RAD21 (NM_006265) rearrangement: c.109:RAD21_chr8:g.117896062del	PRECISE		MANUAL_OK	3to5	-	17202	NA	0	10	10	10
P-0059084-T01-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141183930	141561500	Intron of TRAPPC9(-):48Kb after exon 17	Exon 11 of AGO2(-)	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.2850+47628:TRAPPC9_c.1305:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRAPPC9:AGO2}	377570	NA	0	19	10	18
P-0059087-T01-IM7	SOMATIC	ARAF	ARAF	X	X	47429019	47432497	Exon 13 of ARAF(+)	Promoter of ARAF(+):12Kb from tx start	GRCh37	DELETION	ARAF (NM_001654) rearrangement: c.1382:ARAF_chrX:g.47432497del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3478	NA	0	31	10	31
P-0059109-T01-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	111885997	111887670	Intron of BCL2L11(+):4Kb after exon 2	Intron of BCL2L11(+):6Kb after exon 2	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+4281_c.394+5954del	PRECISE		MANUAL_OK	3to5	Deletion within intron	1673	NA	0	50	10	55
P-0059154-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098786	178104765	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):6Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-5766_c.259del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5979	NA	0	36	10	36
P-0059155-T01-IM7	SOMATIC	FAM20A	MAP3K14	17	17	43347858	66586229	Exon 11 of MAP3K14(-)	Intron of FAM20A(-):10Kb after exon 1	GRCh37	DELETION	FAM20A (NM_017565) - MAP3K14 (NM_003954) rearrangement: c.404+10175:FAM20A_c.1893:MAP3K14del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FAM20A:MAP3K14}	23238371	NA	0	17	10	17
P-0059159-T01-IM7	SOMATIC	PAK7	PAK7	20	20	8945049	9538171	IGR: 105Kb before PLCB4(+)	Intron of PAK7(-):83bp after exon 7	GRCh37	DELETION	PAK7 (NM_177990) rearrangement: c.1743+84:PAK7_chr20:g.8945049del	PRECISE		MANUAL_OK	3to5	-	593122	NA	0	10	10	12
P-0059268-T01-IM7	SOMATIC	INPPL1	INPPL1	11	1	71939931	46247429	Intron of INPPL1(+):40bp after exon 4	IGR: 22Kb before MAST2(+)	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(1;11)(p34.1;q13.4)(chr1:g.46247429::chr11:g.71939931)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	69	10	69
P-0059268-T01-IM7	SOMATIC	TET2	TET2	4	4	106068572	106196271	5-UTR of TET2(+):87Kb before coding start	Exon 11 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.4604:TET2_chr4:g.106068572del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	127699	NA	0	3	10	3
P-0059294-T01-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4099399	11755636	Exon 7 of MAP2K2(-)	IGR: 29Kb before ZNF833P(+)	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.719:MAP2K2_chr19:g.11755636inv	PRECISE		MANUAL_OK	3to3	-	7656237	NA	0	100	10	125
P-0059296-T01-IM7	SOMATIC	FGFR2	BAIAP2L1	10	7	123242027	98029133	Intron of FGFR2(-):1Kb after exon 17	Intron of BAIAP2L1(-):980bp after exon 1	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - BAIAP2L1 (NM_018842) fusion: t(7;10)(q22.1;q26.13)(chr7:g.98029133::chr10:g.123242027)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:BAIAP2L1}	0	NA	0	68	10	69
P-0059302-T01-IM7	SOMATIC	DNMT1	PLD3	19	19	10251491	40878152	Exon 31 of DNMT1(-)	Intron of PLD3(+):372bp after exon 9	GRCh37	INVERSION	DNMT1 (NM_001379) - PLD3 (NM_012268) rearrangement: c.3441:DNMT1_c.879+372:PLD3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DNMT1:PLD3}	30626661	NA	0	68	10	71
P-0059302-T01-IM7	SOMATIC	CARM1	CARM1	19	19	11018814	11022853	Exon 3 of CARM1(+)	Intron of CARM1(+):6bp before exon 5	GRCh37	DUPLICATION	CARM1 (NM_199141) rearrangement: c.446_c.559-7dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4039	NA	0	38	10	40
P-0059302-T01-IM7	SOMATIC	AR	AR	X	X	66936208	66942714	Intron of AR(+):1Kb before exon 5	Exon 7 of AR(+)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-1112_c.2495del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6506	NA	0	41	10	41
P-0059310-T01-IM7	SOMATIC	CDK8	CDK8	13	13	26954857	26959280	Intron of CDK8(+):2Kb before exon 5	Intron of CDK8(+):67bp before exon 6	GRCh37	DELETION	CDK8 (NM_001260) rearrangement: c.457-2094_c.515-68del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4423	NA	0	27	10	28
P-0059310-T01-IM7	SOMATIC	TP53BP1	TP53BP1	15	15	29265487	43720113	5-UTR of APBA2(+):81Kb before coding start	Intron of TP53BP1(-):100bp after exon 18	GRCh37	DELETION	TP53BP1 (NM_001141980) rearrangement: c.3828+101:TP53BP1_chr15:g.29265487del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	14454626	NA	0	8	0	8
P-0059312-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67576230	86496283	Intron of PIK3R1(+):125bp before exon 6	5-UTR of LOC101929380(+):48Kb before coding start	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.635-126:PIK3R1_chr5:g.86496283inv	PRECISE		MANUAL_OK	5to5	-	18920053	NA	0	3	10	6
P-0059314-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39868193	42869587	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):458bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+459:TMPRSS2_c.18+2094:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001394	NA	0	75	10	79
P-0059314-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44889202	44910760	Intron of KDM6A(+):5Kb before exon 7	Intron of KDM6A(+):193bp before exon 9	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.565-4974_c.655-194del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	21558	NA	0	72	10	73
P-0059326-T01-IM7	SOMATIC	CEBPA	CHRNA7	19	15	33793149	32332693	Exon 1 of CEBPA(-)	Intron of CHRNA7(+):9Kb after exon 2	GRCh37	TRANSLOCATION	CEBPA (NM_004364) - CHRNA7 (NM_001190455) rearrangement: t(15;19)(q13.3;q13.11)(chr15:g.32332693::chr19:g.33793149)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CEBPA:CHRNA7}	0	NA	0	8	10	8
P-0059326-T01-IM7	SOMATIC	JAK3	AP1M1	19	19	16336985	17953236	Intron of AP1M1(+):246bp before exon 7	Exon 6 of JAK3(-)	GRCh37	INVERSION	JAK3 (NM_000215) - AP1M1 (NM_001130524) rearrangement: c.750:JAK3_c.583-247:AP1M1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {JAK3:AP1M1}	1616251	NA	0	14	10	18
P-0049664-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31374384	31374980	Exon 5 of DNMT3B(+)	Intron of DNMT3B(+):55bp before exon 6	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.383_c.433-56del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	596	NA	0	113	10	116
P-0059068-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29684320	32417538	Intron of EWSR1(+):274bp before exon 9	Intron of WT1(-):264bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417538::chr22:g.29684320)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	54	10	54
P-0015360-T04-IM7	SOMATIC	SLX4	SLX4	16	16	3644706	3949882	Intron of SLX4(-):106bp before exon 10	IGR: 48Kb before LOC102724927(-)	GRCh37	DELETION	SLX4 (NM_032444) rearrangement: c.2014-106:SLX4_chr16:g.3949882del	PRECISE		MANUAL_OK	3to5	-	305176	NA	0	18	10	18
P-0041155-T02-IM7	SOMATIC	NOTCH3	NOTCH3	X	19	40945611	15281895	5-UTR of USP9X(+):37Kb before coding start	Intron of NOTCH3(-):259bp before exon 26	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(19;X)(p13.12;p11.4)(chr19:g.15281895::chrX:g.40945611)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {USP9X:NOTCH3}	0	NA	0	74	10	73
P-0043184-T02-IM7	SOMATIC	SEC16A	NOTCH1	9	9	139362217	139397404	Intron of SEC16A(-):649bp after exon 5	Intron of NOTCH1(-):229bp after exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3802+650:SEC16A_c.5167+230:NOTCH1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SEC16A:NOTCH1}	35187	NA	0	77	0	80
P-0056583-T02-IM7	SOMATIC	BCL2L11	ACOXL	2	2	111691480	111884843	Intron of ACOXL(+):261bp after exon 12	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	DUPLICATION	BCL2L11 (NM_138621) - ACOXL (NM_001142807) rearrangement: c.394+3127:BCL2L11_c.1059+261:ACOXLdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCL2L11:ACOXL}	193363	NA	0	32	10	32
P-0058677-T02-IM7	SOMATIC	FGFR1	FGFR1	8	8	38271219	38276280	Exon 19 of FGFR1(-)	Intron of FGFR1(-):389bp before exon 11	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.1378-389_c.2489dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5061	NA	0	85	10	89
P-0059099-T02-IM7	SOMATIC	EWSR1	EWSR1	22	7	29689043	98842992	Intron of EWSR1(+):448bp after exon 12	IGR: 28Kb before MYH16(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(7;22)(q22.1;q12.2)(chr7:g.98842992::chr22:g.29689043)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	24	0	27
P-0059125-T01-IM7	SOMATIC	PAX8	PAX8	2	2	113983141	115825184	Intron of PAX8(-):2Kb after exon 10	Intron of DPP10(+):3Kb after exon 1	GRCh37	INVERSION	PAX8 (NM_003466) rearrangement: c.1189+1591:PAX8_chr2:g.115825184inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAX8:DPP10}	1842043	NA	0	9	10	13
P-0059127-T01-IM7	SOMATIC	MTOR	MTOR	1	1	11193443	112842439	Intron of MTOR(-):189bp before exon 38	IGR: 96Kb before CTTNBP2NL(+)	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.5247-189:MTOR_chr1:g.112842439inv	PRECISE		MANUAL_OK	3to3	-	101648996	NA	0	17	10	17
P-0059323-T01-IM7	SOMATIC	FLCN	FLCN	17	5	17124874	171253108	Exon 8 of FLCN(-)	IGR: 35Kb before FBXW11(-)	GRCh37	TRANSLOCATION	FLCN (NM_144997) rearrangement: t(5;17)(q35.1;p11.2)(chr5:g.171253108::chr17:g.17124874)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	32	0	42
P-0059358-T01-IM7	SOMATIC	FAT1	FAT1	4	4	153705513	187520970	5-UTR of ARFIP1(+):45Kb before coding start	Intron of FAT1(-):81bp after exon 22	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.12103+82:FAT1_chr4:g.153705513inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {FAT1:ARFIP1}	33815457	NA	0	42	10	44
P-0059376-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32913538	76644327	Exon 11 of BRCA2(+)	IGR: 193Kb before LMO7DN-IT1(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.5046:BRCA2_chr13:g.76644327inv	PRECISE		MANUAL_OK	3to3	-	43730789	NA	0	38	10	38
P-0059379-T01-IM7	SOMATIC	BAP1	BAP1	3	3	51979345	52442699	Intron of PARP3(+):105bp after exon 6	Intron of BAP1(-):77bp before exon 4	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.123-77:BAP1_chr3:g.51979345dup	PRECISE		MANUAL_OK	5to3	-	463354	NA	0	24	10	24
P-0059408-T01-IM7	SOMATIC	PREX2	PREX2	8	8	68989764	69053456	Intron of PREX2(+):60bp after exon 15	Intron of PREX2(+):3Kb after exon 33	GRCh37	DELETION	PREX2 (NM_024870) rearrangement: c.1642+60_c.4087+2704del	PRECISE		MANUAL_OK	3to5	Deletion of 18 exons : in frame	63692	NA	0	33	10	33
P-0029409-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	212615413	212860363	Exon 5 of ERBB4(-)	Intron of ERBB4(-):48Kb before exon 3	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.573_c.235-48022del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	244950	NA	0	13	10	13
P-0059361-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39869320	42874877	Intron of ERG(-):966bp after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4761:TMPRSS2_c.18+967:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3005557	NA	0	18	10	18
P-0059407-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41248820	41266631	5-UTR of CTNNB1(+):17Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DUPLICATION	CTNNB1 (NM_001904) rearrangement: c.428:CTNNB1_chr3:g.41248820dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	17811	NA	0	42	10	43
P-0059442-T01-IM7	SOMATIC	MAP3K14	MAP3K14	18	17	65595072	43344127	IGR: 411Kb before LOC643542(+)	Intron of MAP3K14(-):79bp before exon 14	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;18)(q21.31;q22.1)(chr17:g.43344127::chr18:g.65595072)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	45	10	45
P-0059443-T01-IM7	SOMATIC	ZRSR2	ZRSR2	X	2	15808580	186012111	5-UTR of ZRSR2(+):38bp before coding start	IGR: 549Kb before ZNF804A(+)	GRCh37	TRANSLOCATION	ZRSR2 (NM_005089) rearrangement: t(2;X)(q31.2;p22.2)(chr2:g.186012111::chrX:g.15808580)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	10	10	14
P-0037088-T02-IM7	SOMATIC	PPM1D	PPM1D	17	17	58677871	61625260	Exon 1 of PPM1D(+)	3-UTR of KCNH6(+):24Kb after coding stop	GRCh37	INVERSION	PPM1D (NM_003620) rearrangement: c.96:PPM1D_chr17:g.61625260inv	PRECISE		MANUAL_OK	5to5	-	2947389	NA	0	26	10	31
P-0058932-T02-IM7	SOMATIC	AKT1	AKT1	14	1	105237032	47586060	Intron of AKT1(-):49bp after exon 13	Promoter of CYP4Z1(+):53Kb from tx start	GRCh37	TRANSLOCATION	AKT1 (NM_001014431) rearrangement: t(1;14)(p33;q32.33)(chr1:g.47586060::chr14:g.105237032)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	5	10	5
P-0059009-T02-IM7	SOMATIC	BMPR1A	BMPR1A	15	10	57827984	88679164	Intron of CGNL1(+):4Kb after exon 15	Exon 10 of BMPR1A(+)	GRCh37	TRANSLOCATION	BMPR1A (NM_004329) rearrangement: t(10;15)(q23.2;q21.3)(chr10:g.88679164::chr15:g.57827984)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	23	10	26
P-0059257-T02-IM7	SOMATIC	EML4	ALK	2	2	29448210	42507008	Intron of ALK(-):116bp after exon 19	Intron of EML4(+):981bp before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-982:EML4_c.3172+117:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058798	NA	0	34	10	37
P-0059287-T01-IM7	SOMATIC	CDC73	CDC73	1	1	193181288	193298315	Intron of CDC73(+):58bp after exon 12	5-UTR of LINC01031(+):37Kb before coding start	GRCh37	INVERSION	CDC73 (NM_024529) rearrangement: c.1066+58:CDC73_chr1:g.193298315inv	PRECISE		MANUAL_OK	5to5	-	117027	NA	0	21	10	21
P-0059293-T01-IM7	SOMATIC	DGKH	FH	13	1	42830159	241667341	5-UTR of DGKH(+):557bp before coding start	Exon 7 of FH(-)	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241667341::chr13:g.42830159)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FH:DGKH}	0	NA	0	13	0	17
P-0059449-T01-IM7	SOMATIC	LATS2	LATS2	13	13	21504151	21562727	IGR: 9Kb before LINC00367(-)	Exon 4 of LATS2(-)	GRCh37	INVERSION	LATS2 (NM_014572) rearrangement: c.1192:LATS2_chr13:g.21504151inv	PRECISE		MANUAL_OK	5to5	-	58576	NA	0	38	10	45
P-0059450-T01-IM7	SOMATIC	NOTCH1	NOTCH1	17	9	78350349	139401050	Intron of RNF213(+):6bp after exon 52	Exon 24 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;17)(q34.3;q25.3)(chr9:g.139401050::chr17:g.78350349)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	42	10	42
P-0059456-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55119168	55221911	Intron of EGFR(+):32Kb after exon 1	Intron of EGFR(+):66bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+32110_c.889+66del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	102743	NA	0	91	10	99
P-0059492-T01-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101135054	101867650	Intron of GABBR2(-):1Kb before exon 12	Intron of TGFBR1(+):66bp after exon 1	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.97+66:TGFBR1_chr9:g.101135054del	PRECISE		MANUAL_OK	3to5	-	732596	NA	0	61	10	63
P-0059499-T01-IM7	SOMATIC	WT1	WT1	11	11	32417763	32418818	Intron of WT1(-):39bp after exon 7	Intron of WT1(-):865bp before exon 7	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.1099-865_c.1249+40del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1055	NA	0	5	4	5
P-0059499-T01-IM7	SOMATIC	RSF1	PAK1	11	11	77047327	77506656	Exon 13 of PAK1(-)	Intron of RSF1(-):25Kb after exon 1	GRCh37	DELETION	RSF1 (NM_016578) - PAK1 (NM_002576) rearrangement: c.187+24918:RSF1_c.1217:PAK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RSF1:PAK1}	459329	NA	0	19	10	19
P-0059506-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187530993	187531872	Exon 15 of FAT1(-)	Intron of FAT1(-):667bp after exon 14	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.9853+668_c.10030del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	879	NA	0	7	0	9
P-0057852-T02-IM7	SOMATIC	NUP93	NUP93	17	16	81076421	56875766	IGR: 39Kb before METRNL(+)	Intron of NUP93(+):21bp after exon 21	GRCh37	TRANSLOCATION	NUP93 (NM_014669) rearrangement: t(16;17)(q13;q25.3)(chr16:g.56875766::chr17:g.81076421)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0058396-T01-IM7	SOMATIC	MGA	MGA	15	15	42005528	42021785	Exon 9 of MGA(+)	Intron of MGA(+):238bp after exon 11	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.3264_c.3843+238del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16257	NA	0	77	10	81
P-0059129-T01-IM7	SOMATIC	KLF5	KLF5	13	13	62401491	73633598	IGR: 176Kb before LINC00358(-)	Exon 1 of KLF5(+)	GRCh37	DELETION	KLF5 (NM_001730) rearrangement: c.133:KLF5_chr13:g.62401491del	PRECISE		MANUAL_OK	3to5	-	11232107	NA	0	18	10	18
P-0059129-T01-IM7	SOMATIC	CALR	CALR	19	19	13051617	28782455	Exon 7 of CALR(+)	IGR: 144Kb before LOC100420587(-)	GRCh37	DELETION	CALR (NM_004343) rearrangement: c.876:CALR_chr19:g.28782455del	PRECISE		MANUAL_OK	3to5	-	15730838	NA	0	14	10	15
P-0059131-T01-IM7	SOMATIC	C17orf99	BRCA1	17	17	41201086	76146865	Intron of BRCA1(-):51bp after exon 21	Intron of C17orf99(+):4Kb after exon 2	GRCh37	INVERSION	C17orf99 (NM_001163075) - BRCA1 (NM_007294) rearrangement: c.70+3873:C17orf99_c.5406+52:BRCA1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {C17orf99:BRCA1}	34945779	NA	0	4	8	4
P-0059131-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11166051	11169500	Intron of SMARCA4(+):3Kb before exon 32	Exon 33 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4425-2880_c.4570del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3449	NA	0	14	10	18
P-0059311-T01-IM7	SOMATIC	PPM1D	PTPRT	20	17	41400156	58712038	Exon 5 of PTPRT(-)	Intron of PPM1D(+):700bp after exon 3	GRCh37	TRANSLOCATION	PPM1D (NM_003620) - PTPRT (NM_133170) rearrangement: t(17;20)(q23.2;q12)(chr17:g.58712038::chr20:g.41400156)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PPM1D:PTPRT}	0	NA	0	49	10	49
P-0059311-T01-IM7	SOMATIC	RECQL4	RECQL4	8	8	145742441	145744114	Exon 4 of RECQL4(-)	Promoter of RECQL4(-):7Kb from tx start	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.347:RECQL4_chr8:g.145744114inv	PRECISE		MANUAL_OK	3to3	-	1673	NA	0	9	10	9
P-0059458-T01-IM7	SOMATIC	NF1	NF1	17	11	29662014	46305554	Exon 39 of NF1(+)	Intron of CREB3L1(+):6Kb after exon 1	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(11;17)(p11.2;q11.2)(chr11:g.46305554::chr17:g.29662014)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	62	10	76
P-0059459-T01-IM7	SOMATIC	POLE	POLE	12	12	132024231	133257792	IGR: 171Kb before SFSWAP(+)	Exon 2 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.136:POLE_chr12:g.132024231inv	PRECISE		MANUAL_OK	3to3	-	1233561	NA	0	5	10	5
P-0059476-T01-IM7	SOMATIC	AGO2	TRAPPC9	8	8	141423516	141561581	Intron of TRAPPC9(-):8Kb before exon 6	Intron of AGO2(-):46bp before exon 11	GRCh37	DELETION	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.1270-46:AGO2_c.1181-7719:TRAPPC9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {AGO2:TRAPPC9}	138065	NA	0	2	6	2
P-0059476-T01-IM7	SOMATIC	LATS1	LATS1	9	6	38116563	150016247	IGR: 201Kb before SHB(-)	Exon 3 of LATS1(-)	GRCh37	TRANSLOCATION	LATS1 (NM_004690) rearrangement: t(6;9)(q25.1;p13.2)(chr6:g.150016247::chr9:g.38116563)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	14
P-0059477-T01-IM7	SOMATIC	NOTCH4	MIPOL1	14	6	37817599	32184824	Intron of MIPOL1(+):21Kb before exon 12	Exon 11 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) - MIPOL1 (NM_138731) rearrangement: t(6;14)(p21.32;q21.1)(chr6:g.32184824::chr14:g.37817599)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH4:MIPOL1}	0	NA	0	12	0	13
P-0059478-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098175	178113217	Intron of NFE2L2(-):108bp before exon 3	Intron of NFE2L2(-):14Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-14218_c.313-108del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	15042	NA	0	3	10	4
P-0059481-T01-IM7	SOMATIC	ERCC2	ERCC2	19	19	40537978	45868242	3-UTR of ZNF780B(-):2Kb after coding stop	Intron of ERCC2(-):30bp before exon 7	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.478-30:ERCC2_chr19:g.40537978inv	PRECISE		MANUAL_OK	5to5	-	5330264	NA	0	12	10	16
P-0059497-T01-IM7	SOMATIC	JAK2	JAK2	9	9	3581358	5078380	IGR: 87Kb before RFX3-AS1(+)	Exon 16 of JAK2(+)	GRCh37	INVERSION	JAK2 (NM_004972) rearrangement: c.2067:JAK2_chr9:g.3581358inv	PRECISE		MANUAL_OK	5to5	-	1497022	NA	0	19	10	28
P-0059570-T01-IM7	SOMATIC	NSD1	NSD1	5	1	176638689	178964504	Exon 5 of NSD1(+)	IGR: 31Kb before FAM20B(+)	GRCh37	TRANSLOCATION	NSD1 (NM_022455) rearrangement: t(1;5)(q25.2;q35.3)(chr1:g.178964504::chr5:g.176638689)	PRECISE		MANUAL_OK	5to5	-	0	NA	2	37	10	38
P-0059576-T01-IM7	SOMATIC	PLK2	PLK2	5	5	57751283	171266587	Intron of PLK2(-):42bp before exon 12	IGR: 22Kb before FBXW11(-)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.1626-42:PLK2_chr5:g.171266587inv	PRECISE		MANUAL_OK	3to3	-	113515304	NA	0	2	7	3
P-0059578-T01-IM7	SOMATIC	VMP1	CDK12	17	17	37618564	57844246	Exon 1 of CDK12(+)	Intron of VMP1(+):2Kb after exon 6	GRCh37	DUPLICATION	VMP1 (NM_030938) - CDK12 (NM_016507) rearrangement: c.582+1747:VMP1_c.240:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {VMP1:CDK12}	20225682	NA	0	57	10	61
P-0059586-T01-IM7	SOMATIC	KLF5	KLF5	13	13	37715044	73636443	IGR: 38Kb before CSNK1A1L(-)	Exon 2 of KLF5(+)	GRCh37	DELETION	KLF5 (NM_001730) rearrangement: c.706:KLF5_chr13:g.37715044del	PRECISE		MANUAL_OK	3to5	-	35921399	NA	0	13	10	30
P-0020065-T02-IM7	SOMATIC	SRC	SRC	20	20	36025986	36481250	Intron of SRC(+):115bp before exon 9	Intron of CTNNBL1(+):7Kb before exon 14	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.704-116:SRC_chr20:g.36481250inv	PRECISE		MANUAL_OK	5to5	-	455264	NA	0	14	10	14
P-0039872-T02-IM7	SOMATIC	ERCC4	ERCC4	16	16	8969556	14020414	IGR: 16Kb before USP7(-)	Intron of ERCC4(+):3bp before exon 3	GRCh37	DELETION	ERCC4 (NM_005236) rearrangement: c.389-4:ERCC4_chr16:g.8969556del	PRECISE		MANUAL_OK	3to5	-	5050858	NA	0	51	10	57
P-0041452-T01-IM7	SOMATIC	ODF3L2	JAK3	19	19	469256	17955080	Intron of ODF3L2(-):1Kb before exon 3	Exon 2 of JAK3(-)	GRCh37	DUPLICATION	ODF3L2 (NM_182577) - JAK3 (NM_000215) rearrangement: c.236-1494:ODF3L2_c.147:JAK3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ODF3L2:JAK3}	17485824	NA	0	5	10	5
P-0056928-T02-IM7	SOMATIC	IGF1R	IGF1R	15	15	99231176	99250942	Intron of IGF1R(+):20Kb before exon 2	Exon 2 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.95-19615_c.246dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	19766	NA	0	34	10	36
P-0059163-T02-IM7	SOMATIC	AXIN2	AXIN2	17	17	63537609	63552097	Exon 4 of AXIN2(-)	Intron of AXIN2(-):2Kb after exon 2	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.815+1827_c.1023del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14488	NA	0	33	0	220
P-0059163-T02-IM7	SOMATIC	XPO1	XPO1	2	2	61742774	61753559	Intron of XPO1(-):7Kb after exon 4	Exon 3 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.224_c.301+6972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10785	NA	0	65	10	189
P-0059163-T02-IM7	SOMATIC	TSC1	TSC1	9	1	135779292	56602679	Intron of TSC1(-):88bp before exon 17	IGR: 358Kb before PPAP2B(-)	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(1;9)(p32.2;q34.13)(chr1:g.56602679::chr9:g.135779292)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	67	10	54
P-0059423-T01-IM7	SOMATIC	ASXL1	ASXL1	20	20	30952952	31022770	Intron of ASXL1(+):1Kb before exon 2	Exon 12 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.58-1235_c.2255dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	69818	NA	0	47	10	50
P-0059425-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39836774	42874735	Intron of ERG(-):19Kb before exon 2	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4619:TMPRSS2_c.19-19230:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3037961	NA	0	92	10	114
P-0059430-T01-IM7	SOMATIC	TRAF7	TRAF7	16	3	2213998	37240278	Exon 2 of TRAF7(+)	IGR: 44Kb before GOLGA4(+)	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(3;16)(p22.2;p13.3)(chr3:g.37240278::chr16:g.2213998)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	15	10	15
P-0059432-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29684306	32416958	Intron of EWSR1(+):288bp before exon 9	Intron of WT1(-):844bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416958::chr22:g.29684306)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	23	0	22
P-0059433-T01-IM7	SOMATIC	NSD1	NSD1	5	5	53093315	176719156	IGR: 87Kb before ARL15(-)	Exon 22 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.6460:NSD1_chr5:g.53093315del	PRECISE		MANUAL_OK	3to5	-	123625841	NA	0	8	9	8
P-0059435-T01-IM7	SOMATIC	DGKH	FH	13	1	42830525	241661272	5-UTR of DGKH(+):191bp before coding start	Intron of FH(-):2bp before exon 10	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241661272::chr13:g.42830525)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {DGKH:FH}	0	NA	0	9	9	11
P-0059595-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831258	42866993	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):488bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-488:TMPRSS2_c.19-13714:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3035735	NA	0	10	10	11
P-0059599-T01-IM7	SOMATIC	TP53	TP53	17	17	7578308	7599987	Intron of TP53(-):19bp before exon 6	Intron of WRAP53(+):4Kb before exon 5	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.560-19:TP53_chr17:g.7599987del	PRECISE		MANUAL_OK	3to5	-	21679	NA	0	13	10	13
P-0059614-T01-IM7	SOMATIC	KMT2B	KMT2B	19	11	36221336	30062222	Exon 24 of KMT2B(+)	IGR: 31Kb before KCNA4(-)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(11;19)(p14.1;q13.12)(chr11:g.30062222::chr19:g.36221336)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	13
P-0059614-T01-IM7	SOMATIC	INSR	INSR	19	19	7109871	7117413	Promoter of INSR(-):2Kb from tx start	Exon 22 of INSR(-)	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.3803:INSR_chr19:g.7109871inv	PRECISE		MANUAL_OK	3to3	-	7542	NA	0	17	10	17
P-0059630-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27042493	27099100	Intron of ARID1A(+):14Kb before exon 2	Exon 13 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1138-13649_c.3516del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	56607	NA	0	4	9	4
P-0059631-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	156379918	157527573	IGR: 663Kb before NOX3(-)	Exon 20 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.5298:ARID1B_chr6:g.156379918inv	PRECISE		MANUAL_OK	5to5	-	1147655	NA	0	53	10	57
P-0059631-T01-IM7	SOMATIC	TEK	TEK	9	9	27209157	27210968	Exon 16 of TEK(+)	Intron of TEK(+):2Kb before exon 17	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.2614_c.2687-1737del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1811	NA	0	15	10	16
P-0016733-T04-IM7	SOMATIC	TMPRSS2	ERG	21	21	39823695	42873910	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3794:TMPRSS2_c.19-6151:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3050215	NA	0	89	10	93
P-0057749-T02-IM7	SOMATIC	BRIP1	BRIP1	17	17	59937296	59940390	Intron of BRIP1(-):28bp before exon 3	5-UTR of BRIP1(-):180Kb before coding start	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.94-28:BRIP1_chr17:g.59940390del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3094	NA	0	29	10	30
P-0058763-T01-IM7	SOMATIC	NCOA3	CDH22	20	20	44867856	46265624	Intron of CDH22(-):2Kb after exon 3	Intron of NCOA3(+):118bp after exon 12	GRCh37	INVERSION	NCOA3 (NM_181659) - CDH22 (NM_021248) rearrangement: c.2376+118:NCOA3_c.550+1746:CDH22inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NCOA3:CDH22}	1397768	NA	0	10	10	10
P-0059597-T01-IM7	SOMATIC	EZH2	EZH2	7	7	121995185	148529855	Intron of CADPS2(-):6Kb after exon 27	Intron of EZH2(-):13bp before exon 4	GRCh37	INVERSION	EZH2 (NM_004456) rearrangement: c.247-13:EZH2_chr7:g.121995185inv	PRECISE		MANUAL_OK	3to3	-	26534670	NA	0	2	5	2
P-0059625-T01-IM7	SOMATIC	GALM	BCL2L11	2	2	38911879	111921618	Intron of GALM(+):3Kb after exon 3	Intron of BCL2L11(+):91bp before exon 4	GRCh37	DELETION	GALM (NM_138801) - BCL2L11 (NM_138621) rearrangement: c.552+3251:GALM_c.499-92:BCL2L11del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GALM:BCL2L11}	73009739	NA	0	8	0	9
P-0059625-T01-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141436570	141566539	Intron of TRAPPC9(-):143bp after exon 5	Intron of AGO2(-):154bp before exon 9	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.1180+144:TRAPPC9_c.1027-154:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TRAPPC9:AGO2}	129969	NA	0	7	10	7
P-0059627-T01-IM7	SOMATIC	GLI1	MKL1	22	12	40830111	57862125	Intron of MKL1(-):1Kb after exon 5	Intron of GLI1(+):118bp after exon 10	GRCh37	TRANSLOCATION	GLI1 (NM_005269) - MKL1 (NM_020831) rearrangement: t(12;22)(q13.3;q13.1)(chr12:g.57862125::chr22:g.40830111)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {GLI1:MKL1}	0	NA	0	30	10	30
P-0059628-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39915317	42874796	Intron of ERG(-):32Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4680:TMPRSS2_c.39+32269:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2959479	NA	0	31	10	32
P-0059643-T01-IM7	SOMATIC	TRAPPC3	STK40	1	1	36604074	36821147	Intron of TRAPPC3(-):495bp before exon 4	Intron of STK40(-):113bp before exon 6	GRCh37	DUPLICATION	TRAPPC3 (NM_014408) - STK40 (NM_032017) rearrangement: c.241-495:TRAPPC3_c.343-113:STK40dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TRAPPC3:STK40}	217073	NA	0	5	0	5
P-0059643-T01-IM7	SOMATIC	RIT1	RIT1	1	1	155873976	156202507	Intron of RIT1(-):125bp after exon 5	Intron of PMF1-BGLAP(+):4Kb before exon 2	GRCh37	DUPLICATION	RIT1 (NM_006912) rearrangement: c.429+126:RIT1_chr1:g.156202507dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	328531	NA	0	52	10	52
P-0059644-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55241484	55269846	Intron of EGFR(+):129bp before exon 18	Intron of EGFR(+):363bp before exon 27	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-130_c.3163-364dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	28362	NA	0	35	10	35
P-0059719-T01-IM7	SOMATIC	TP53	TP53	17	17	7579493	9861802	Exon 4 of TP53(-)	Intron of GAS7(-):716bp after exon 1	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.194:TP53_chr17:g.9861802inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2282309	NA	0	50	10	60
P-0059719-T01-IM7	SOMATIC	ERBB2	PPP1R1B	17	17	37791781	37871609	Intron of PPP1R1B(+):78bp before exon 6	Exon 10 of ERBB2(+)	GRCh37	DUPLICATION	ERBB2 (NM_004448) - PPP1R1B (NM_032192) rearrangement: c.1219:ERBB2_c.446-79:PPP1R1Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB2:PPP1R1B}	79828	NA	0	63	10	64
P-0059462-T02-IM7	SOMATIC	RB1	RB1	13	13	48916722	48943716	Intron of RB1(+):12bp before exon 3	Intron of RB1(+):976bp after exon 11	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.265-13_c.1127+976dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : out of frame	26994	NA	0	77	10	78
P-0059625-T02-IM7	SOMATIC	GALM	BCL2L11	2	2	38911877	111921484	Intron of GALM(+):3Kb after exon 3	Intron of BCL2L11(+):225bp before exon 4	GRCh37	DELETION	GALM (NM_138801) - BCL2L11 (NM_138621) rearrangement: c.552+3249:GALM_c.499-226:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GALM:BCL2L11}	73009607	NA	0	7	10	8
P-0059625-T02-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141436570	141566539	Intron of TRAPPC9(-):143bp after exon 5	Intron of AGO2(-):154bp before exon 9	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.1180+144:TRAPPC9_c.1027-154:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TRAPPC9:AGO2}	129969	NA	0	38	10	38
P-0059650-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8389551	9458047	Intron of PTPRD(-):144bp before exon 37	5-UTR of PTPRD(-):1Mb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4211-144:PTPRD_chr9:g.9458047del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1068496	NA	0	7	10	8
P-0059651-T01-IM7	SOMATIC	WWTR1	WWTR1	3	3	149238883	178036890	Intron of WWTR1(-):107bp before exon 7	IGR: 100Kb before LINC01014(+)	GRCh37	DELETION	WWTR1 (NM_001168280) rearrangement: c.1019-107:WWTR1_chr3:g.178036890del	IMPPRECISE		MANUAL_OK	3to5	-	28798007	NA	0	6	0	6
P-0059658-T01-IM7	SOMATIC	TP53	AP3D1	19	17	2116988	7578543	Intron of AP3D1(-):232bp after exon 16	Exon 5 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) - AP3D1 (NM_003938) rearrangement: t(17;19)(p13.1;p13.3)(chr17:g.7578543::chr19:g.2116988)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TP53:AP3D1}	0	NA	0	64	10	64
P-0059659-T01-IM7	SOMATIC	NF1	NF1	17	17	29661605	29662159	Intron of NF1(+):250bp before exon 39	Intron of NF1(+):110bp after exon 39	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5813-251_c.6006+110del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	554	NA	0	21	0	27
P-0059660-T01-IM7	SOMATIC	NF1	NF1	17	17	29533287	29559126	Exon 12 of NF1(+)	Exon 25 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1290_c.3233dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	25839	NA	0	5	0	5
P-0059660-T01-IM7	SOMATIC	ALK	ALK	2	2	27603440	30143459	5-UTR of ZNF513(-):3Kb before coding start	Exon 1 of ALK(-)	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.67:ALK_chr2:g.27603440dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF513:ALK}	2540019	NA	0	3	10	3
P-0059661-T01-IM7	SOMATIC	MFSD6	ETV1	7	2	13946303	191344968	Intron of ETV1(-):79bp before exon 10	Intron of MFSD6(+):8Kb before exon 5	GRCh37	TRANSLOCATION	MFSD6 (NM_017694) - ETV1 (NM_001163147) rearrangement: t(2;7)(q32.2;p21.2)(chr2:g.191344968::chr7:g.13946303)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MFSD6:ETV1}	0	NA	0	41	10	41
P-0059665-T01-IM7	SOMATIC	DNAJB1	PRKACA	19	19	14222812	14628031	Intron of PRKACA(-):2Kb after exon 1	Intron of DNAJB1(-):173bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-173:DNAJB1_c.47-4591:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	405219	NA	0	11	10	10
P-0059669-T01-IM7	SOMATIC	FGFR2	POC1B	12	10	89857934	123242798	Intron of POC1B(-):3Kb after exon 8	Intron of FGFR2(-):413bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - POC1B (NM_001199777.2) fusion: t(10;12)(q26.13;q21.33)(chr10:g.123242798::chr12:g.89857934)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:POC1B}	0	NA	0	57	10	55
P-0059676-T01-IM7	SOMATIC	CTCF	CTCF	16	5	67646049	139945456	Intron of CTCF(+):25bp after exon 4	5-UTR of SLC35A4(+):1Kb before coding start	GRCh37	TRANSLOCATION	CTCF (NM_006565) rearrangement: t(5;16)(q31.3;q22.1)(chr5:g.139945456::chr16:g.67646049)	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {CTCF:SLC35A4}	0	NA	0	7	0	8
P-0059678-T01-IM7	SOMATIC	TP53	TP53	17	3	7576503	55393069	Intron of TP53(-):349bp after exon 9	IGR: 107Kb before WNT5A(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(3;17)(p14.3;p13.1)(chr3:g.55393069::chr17:g.7576503)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0059678-T01-IM7	SOMATIC	SRSF2	SRSF2	17	8	74732996	81002240	Exon 1 of SRSF2(-)	Intron of TPD52(-):25Kb before exon 2	GRCh37	TRANSLOCATION	SRSF2 (NM_003016) rearrangement: t(8;17)(q21.13;q25.1)(chr8:g.81002240::chr17:g.74732996)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SRSF2:TPD52}	0	NA	0	24	10	23
P-0059708-T01-IM7	SOMATIC	AXIN1	AXIN1	16	16	292863	396835	5-UTR of ITFG3(+):12Kb before coding start	Exon 2 of AXIN1(-)	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.191:AXIN1_chr16:g.292863del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	103972	NA	0	14	10	15
P-0059710-T01-IM7	SOMATIC	IFNGR1	IFNGR1	6	6	137521103	137530707	Intron of IFNGR1(-):914bp after exon 6	Intron of IFNGR1(-):2Kb before exon 2	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement: c.86-2493_c.861+915inv	PRECISE		MANUAL_OK	3to3	-	9604	NA	0	7	10	8
P-0059756-T01-IM7	SOMATIC	SLC13A3	ERBB4	20	2	45265989	212537951	Intron of SLC13A3(-):14Kb after exon 1	Exon 14 of ERBB4(-)	GRCh37	TRANSLOCATION	SLC13A3 (NM_022829) - ERBB4 (NM_005235) rearrangement: t(2;20)(q34;q13.12)(chr2:g.212537951::chr20:g.45265989)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC13A3:ERBB4}	0	NA	0	22	10	24
P-0017913-T02-IM7	SOMATIC	BRD4	BRD4	19	19	15347094	15350152	Promoter of BRD4(-):1Kb from tx start	Intron of BRD4(-):50bp after exon 17	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.3576+51:BRD4_chr19:g.15347094del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3058	NA	0	81	10	85
P-0045253-T02-IM7	SOMATIC	CREBBP	TRAP1	16	16	3767400	3778762	Intron of TRAP1(-):21bp after exon 1	Exon 31 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.6286:CREBBP_c.88+22:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:TRAP1}	11362	NA	0	4	10	4
P-0059796-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39899208	42872204	Intron of ERG(-):48Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2088:TMPRSS2_c.39+48378:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2972996	NA	0	7	8	7
P-0059809-T01-IM7	SOMATIC	RB1	RB1	13	13	48986137	49047561	Intron of RB1(+):31Kb after exon 17	Intron of RB1(+):35bp after exon 24	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1695+30558_c.2520+35dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : in frame	61424	NA	0	33	10	34
P-0059811-T01-IM7	SOMATIC	ELF3	ELF3	1	1	201980625	201983029	Intron of ELF3(+):198bp after exon 2	Exon 8 of ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.163+198_c.878del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2404	NA	0	12	10	12
P-0059811-T01-IM7	SOMATIC	PAPSS2	PTEN	10	10	89495949	89724996	Intron of PAPSS2(+):5Kb before exon 9	Intron of PTEN(+):47bp before exon 9	GRCh37	DELETION	PAPSS2 (NM_001015880) - PTEN (NM_000314) rearrangement: c.1087-5043:PAPSS2_c.1027-48:PTENdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PAPSS2:PTEN}	229047	NA	0	16	10	22
P-0059812-T01-IM7	SOMATIC	WHSC1	WHSC1	4	4	1890749	1920222	5-UTR of WHSC1(+):12Kb before coding start	Exon 5 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1282:WHSC1_chr4:g.1890749del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29473	NA	0	6	10	10
P-0059814-T01-IM7	SOMATIC	CCND1	FGF19	11	11	69460331	69514229	Intron of CCND1(+):2Kb after exon 3	Exon 3 of FGF19(-)	GRCh37	INVERSION	CCND1 (NM_053056) - FGF19 (NM_005117) rearrangement: c.574+1572:CCND1_c.452:FGF19inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CCND1:FGF19}	53898	NA	0	44	10	46
P-0056529-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5258083	5266250	Exon 8 of PTPRS(-)	Intron of PTPRS(-):1Kb before exon 5	GRCh37	DUPLICATION	PTPRS (NM_002850) rearrangement: c.380-1043_c.651dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8167	NA	0	30	10	34
P-0057492-T01-IM7	SOMATIC	JAK1	JAK1	1	1	65335347	65411771	Intron of JAK1(-):190bp before exon 6	5-UTR of JAK1(-):112Kb before coding start	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.484-190:JAK1_chr1:g.65411771del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	76424	NA	0	7	9	7
P-0059763-T01-IM7	SOMATIC	KIT	KIT	4	4	53118723	55598584	IGR: 201Kb before SPATA18(+)	Intron of KIT(+):420bp after exon 16	GRCh37	INVERSION	KIT (NM_000222) rearrangement: c.2361+420:KIT_chr4:g.53118723inv	IMPPRECISE		MANUAL_OK	5to5	-	2479861	NA	0	6	0	6
P-0059765-T01-IM7	SOMATIC	AKT3	AKT3	1	1	243794712	243801125	Intron of AKT3(-):6Kb after exon 5	Intron of AKT3(-):81bp before exon 5	GRCh37	DUPLICATION	AKT3 (NM_005465) rearrangement: c.430-81_c.561+6201dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	6413	NA	0	14	10	19
P-0059765-T01-IM7	SOMATIC	BLM	BLM	15	15	91298336	91335355	Intron of BLM(+):168bp after exon 5	Intron of BLM(+):1Kb after exon 15	GRCh37	DELETION	BLM (NM_000057) rearrangement: c.1087+168_c.3019+1281del	PRECISE		MANUAL_OK	3to5	Deletion of 10 exons : in frame	37019	NA	0	8	10	8
P-0059765-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	2	149501713	17099200	Intron of PDGFRB(-):110bp before exon 16	IGR: 368Kb before FAM49A(-)	GRCh37	TRANSLOCATION	PDGFRB (NM_002609) rearrangement: t(2;5)(p24.2;q32)(chr2:g.17099200::chr5:g.149501713)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	17	10	17
P-0059583-T01-IM7	SOMATIC	BRD4	BRD4	19	19	15366307	15418696	Exon 10 of BRD4(-)	IGR: 46Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.1848:BRD4_chr19:g.15418696del	PRECISE		MANUAL_OK	3to5	-	52389	NA	0	29	10	30
P-0059583-T01-IM7	SOMATIC	PARP1	PARP1	2	1	135698286	226549170	Intron of CCNT2(+):2Kb after exon 4	Exon 23 of PARP1(-)	GRCh37	TRANSLOCATION	PARP1 (NM_001618) rearrangement: t(1;2)(q42.12;q21.3)(chr1:g.226549170::chr2:g.135698286)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	22
P-0059583-T01-IM7	SOMATIC	XPO1	USP34	2	2	61690716	61719307	Intron of USP34(-):7Kb after exon 1	Exon 16 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.1750:XPO1_c.43+7069:USP34del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPO1:USP34}	28591	NA	0	11	10	11
P-0059585-T01-IM7	SOMATIC	RAD21	RAD21	8	8	117873202	117874086	Intron of RAD21(-):877bp after exon 4	Exon 4 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.368_c.374+878inv	PRECISE		MANUAL_OK	3to3	-	884	NA	0	20	10	20
P-0059589-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89624389	113443160	Intron of PTEN(+):84bp after exon 1	IGR: 466Kb before GPAM(-)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.79+84:PTEN_chr10:g.113443160inv	PRECISE		MANUAL_OK	3to3	-	23818771	NA	0	39	10	43
P-0059589-T01-IM7	SOMATIC	BCL2	BCL2	18	18	60850115	75824176	Intron of BCL2(-):54Kb before exon 3	IGR: 141Kb before LINC01029(-)	GRCh37	DELETION	BCL2 (NM_000633) rearrangement: c.586-54123:BCL2_chr18:g.75824176del	PRECISE		MANUAL_OK	3to5	-	14974061	NA	0	12	10	13
P-0039202-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29688434	128670148	Intron of EWSR1(+):42bp before exon 12	Intron of FLI1(+):5Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128670148::chr22:g.29688434)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	54	10	54
P-0049640-T03-IM7	SOMATIC	CD74	ROS1	6	5	117650417	149782214	Intron of ROS1(-):74bp after exon 32	Intron of CD74(-):26bp before exon 8	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782214::chr6:g.117650417)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	14	10	14
P-0058933-T02-IM7	SOMATIC	ROS1	ROS1	6	2	117652974	112378450	Intron of ROS1(-):2Kb before exon 32	IGR: 147Kb before ANAPC1(-)	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(2;6)(q13;q22.1)(chr2:g.112378450::chr6:g.117652974)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	6	7
P-0059481-T02-IM7	SOMATIC	ERCC2	ERCC2	19	19	40537978	45868242	3-UTR of ZNF780B(-):2Kb after coding stop	Intron of ERCC2(-):30bp before exon 7	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.478-30:ERCC2_chr19:g.40537978inv	PRECISE		MANUAL_OK	5to5	-	5330264	NA	0	30	10	36
P-0059518-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29684466	128671917	Intron of EWSR1(+):128bp before exon 9	Intron of FLI1(+):3Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128671917::chr22:g.29684466)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	14	10	14
P-0059533-T02-IM7	SOMATIC	BBC3	BBC3	19	19	47551999	47731786	Promoter of NPAS1(+):28Kb from tx start	Intron of BBC3(-):83bp before exon 2	GRCh37	INVERSION	BBC3 (NM_001127240) rearrangement: c.89-83:BBC3_chr19:g.47551999inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NPAS1:BBC3}	179787	NA	0	143	10	143
P-0059567-T02-IM7	SOMATIC	TP53	TP53	17	13	7583462	106678193	5-UTR of TP53(-):11Kb before coding start	IGR: 319Kb before LINC00343(+)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(13;17)(q33.2;p13.1)(chr13:g.106678193::chr17:g.7583462)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	38	0	56
P-0059760-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	1	18577194	26010210	Intron of PIK3C2G(+):221bp after exon 17	Intron of MAN1C1(+):3Kb before exon 2	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement: t(1;12)(p36.11;p12.3)(chr1:g.26010210::chr12:g.18577194)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	8	10	7
P-0059760-T01-IM7	SOMATIC	LMF1	TRAF7	16	16	1013919	2225698	Intron of LMF1(-):7Kb after exon 1	Intron of TRAF7(+):75bp after exon 17	GRCh37	INVERSION	LMF1 (NM_022773) - TRAF7 (NM_032271) rearrangement: c.193+6869:LMF1_c.1626+75:TRAF7inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {LMF1:TRAF7}	1211779	NA	0	26	10	27
P-0059769-T01-IM7	SOMATIC	BLM	BLM	15	15	91290704	97576342	Exon 2 of BLM(+)	IGR: 250Kb before SPATA8(+)	GRCh37	INVERSION	BLM (NM_000057) rearrangement: c.82:BLM_chr15:g.97576342inv	IMPPRECISE		MANUAL_OK	5to5	-	6285638	NA	0	5	0	5
P-0059769-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39913759	42874733	Intron of ERG(-):34Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4617:TMPRSS2_c.39+33827:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2960974	NA	0	10	10	10
P-0059773-T01-IM7	SOMATIC	SCN4A	CD79B	17	17	62006833	62043886	Exon 5 of CD79B(-)	Exon 7 of SCN4A(-)	GRCh37	DELETION	SCN4A (NM_000334) - CD79B (NM_001039933) rearrangement: c.1055:SCN4A_c.555:CD79Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SCN4A:CD79B}	37053	NA	0	30	10	30
P-0059773-T01-IM7	SOMATIC	EZH2	ZNF777	7	7	148507378	149135068	Intron of EZH2(-):46bp after exon 17	Intron of ZNF777(-):1Kb before exon 5	GRCh37	DUPLICATION	EZH2 (NM_004456) - ZNF777 (NM_015694) rearrangement: c.2029+47:EZH2_c.1088-1151:ZNF777dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EZH2:ZNF777}	627690	NA	0	22	0	24
P-0059774-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15285380	15422604	Intron of NOTCH3(-):169bp before exon 25	IGR: 42Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4404-169:NOTCH3_chr19:g.15422604del	PRECISE		MANUAL_OK	3to5	-	137224	NA	0	8	4	8
P-0059871-T01-IM7	SOMATIC	MAP2K4	DNAH9	17	17	11644066	12016741	Intron of DNAH9(+):1Kb before exon 30	Intron of MAP2K4(+):64bp after exon 7	GRCh37	DUPLICATION	MAP2K4 (NM_003010) - DNAH9 (NM_001372) rearrangement: c.813+64:MAP2K4_c.5973-1426:DNAH9dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MAP2K4:DNAH9}	372675	NA	0	21	10	22
P-0059883-T01-IM7	SOMATIC	SLX4	SLX4	16	16	3640348	3642760	Exon 12 of SLX4(-)	Exon 11 of SLX4(-)	GRCh37	DELETION	SLX4 (NM_032444) rearrangement: c.2267_c.3291del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2412	NA	0	2	7	2
P-0059883-T01-IM7	SOMATIC	TCF3	TCF3	19	19	1620993	10419343	Exon 12 of TCF3(-)	Exon 1 of ZGLP1(-)	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1067:TCF3_chr19:g.10419343inv	PRECISE		MANUAL_OK	3to3	-	8798350	NA	0	3	10	2
P-0059884-T01-IM7	SOMATIC	PPP1CB	ALK	2	2	28980750	29447441	Intron of PPP1CB(+):6Kb after exon 2	Intron of ALK(-):885bp after exon 19	GRCh37	INVERSION	PPP1CB (NM_206876) - ALK (NM_004304) fusion: c.52+5708:PPP1CB_c.3172+886:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PPP1CB:ALK}	466691	NA	0	18	10	18
P-0059884-T01-IM7	SOMATIC	ERBB4	ERBB4	2	2	212290056	212566917	Intron of ERBB4(-):1Kb before exon 23	Intron of ERBB4(-):26bp before exon 12	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.1290-26_c.2720-1030del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : out of frame	276861	NA	0	5	10	5
P-0059884-T01-IM7	SOMATIC	GATA1	GATA1	X	X	9306947	48650322	IGR: 124Kb before TBL1X(+)	Exon 3 of GATA1(+)	GRCh37	INVERSION	GATA1 (NM_002049) rearrangement: c.292:GATA1_chrX:g.9306947inv	PRECISE		MANUAL_OK	5to5	-	39343375	NA	0	29	10	32
P-0059884-T01-IM7	SOMATIC	RBM10	RBM10	X	X	39469360	47044645	IGR: 243Kb before LINC01282(-)	Intron of RBM10(+):42bp after exon 18	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.2295+42:RBM10_chrX:g.39469360inv	PRECISE		MANUAL_OK	3to3	-	7575285	NA	0	13	10	13
P-0059894-T01-IM7	SOMATIC	RB1	RB1	13	13	49054117	49102989	Intron of RB1(+):16bp before exon 27	5-UTR of RCBTB2(-):39Kb before coding start	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.2714-17:RB1_chr13:g.49102989inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {RB1:RCBTB2}	48872	NA	0	16	10	16
P-0059894-T01-IM7	SOMATIC	NF2	ZNRF3	22	22	29446596	30041809	Exon 8 of ZNRF3(+)	Intron of NF2(+):4Kb after exon 4	GRCh37	DUPLICATION	NF2 (NM_000268) - ZNRF3 (NM_001206998) rearrangement: c.447+3535:NF2_c.2427:ZNRF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NF2:ZNRF3}	595213	NA	0	91	10	93
P-0059904-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	11273193	15291853	Promoter of KANK2(-):2Kb from tx start	Exon 18 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2913:NOTCH3_chr19:g.11273193del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH3:KANK2}	4018660	NA	0	54	10	55
P-0059905-T01-IM7	SOMATIC	ATXN7	ATXN7	3	3	63915253	63975706	Intron of ATXN7(+):16Kb after exon 3	Intron of ATXN7(+):145bp before exon 9	GRCh37	DELETION	ATXN7 (NM_000333) Rearrangement: c.394+16352_1362-146del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	60453	NA	0	3	9	3
P-0059906-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	4	11121089	187653934	Exon 15 of SMARCA4(+)	IGR: 145Kb before FAT1(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(4;19)(q35.2;p13.2)(chr4:g.187653934::chr19:g.11121089)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	28	10	28
P-0021850-T02-IM7	SOMATIC	TRAF7	ZNF598	16	16	2048272	2221298	Exon 14 of ZNF598(-)	Exon 6 of TRAF7(+)	GRCh37	INVERSION	TRAF7 (NM_032271) - ZNF598 (NM_178167) rearrangement: c.382:TRAF7_c.2678:ZNF598inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRAF7:ZNF598}	173026	NA	0	62	10	65
P-0021850-T02-IM7	SOMATIC	ARID1A	ERF	19	1	42753711	27095215	Exon 4 of ERF(-)	Intron of ARID1A(+):725bp after exon 11	GRCh37	TRANSLOCATION	ARID1A (NM_006015) - ERF (NM_006494) rearrangement: t(1;19)(p36.11;q13.2)(chr1:g.27095215::chr19:g.42753711)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID1A:ERF}	0	NA	0	69	10	68
P-0021850-T02-IM7	SOMATIC	ZNF296	AKT2	19	19	40741923	45578693	Exon 11 of AKT2(-)	Intron of ZNF296(-):277bp after exon 2	GRCh37	DELETION	ZNF296 (NM_145288) - AKT2 (NM_001626) rearrangement: c.448+278:ZNF296_c.1049:AKT2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZNF296:AKT2}	4836770	NA	0	7	10	7
P-0021850-T02-IM7	SOMATIC	GINS1	EP300	22	20	41560007	25423402	Intron of EP300(+):49bp before exon 22	Intron of GINS1(+):990bp after exon 6	GRCh37	TRANSLOCATION	GINS1 (NM_021067) - EP300 (NM_001429) rearrangement: t(20;22)(p11.21;q13.2)(chr20:g.25423402::chr22:g.41560007)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GINS1:EP300}	0	NA	0	7	9	7
P-0052976-T02-IM7	SOMATIC	TNS3	EGFR	7	7	47411244	55222307	Intron of TNS3(-):2Kb before exon 17	Intron of EGFR(+):462bp after exon 7	GRCh37	INVERSION	TNS3 (NM_022748) - EGFR (NM_005228) fusion: c.1025-2026:TNS3_c.889+462:EGFRinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TNS3:EGFR}	7811063	NA	0	87	0	115
P-0058670-T02-IM7	SOMATIC	DIP2C	POLE	12	10	133249079	678876	Intron of POLE(-):133bp after exon 15	Intron of DIP2C(-):57Kb after exon 1	GRCh37	TRANSLOCATION	DIP2C (NM_014974) - POLE (NM_006231) rearrangement: t(10;12)(p15.3;q24.33)(chr10:g.678876::chr12:g.133249079)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {DIP2C:POLE}	0	NA	0	15	8	15
P-0058670-T02-IM7	SOMATIC	NCOR1	NCOR1	17	17	15989712	16121856	Exon 23 of NCOR1(-)	Promoter of NCOR1(-):188Kb from tx start	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.3061:NCOR1_chr17:g.16121856del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	132144	NA	0	30	10	30
P-0058824-T02-IM7	SOMATIC	NF1	NF1	17	17	2030216	29683452	Intron of SMG6(-):41Kb before exon 14	Intron of NF1(+):25bp before exon 51	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7616-26:NF1_chr17:g.2030216del	PRECISE		MANUAL_OK	3to5	-	27653236	NA	0	52	10	53
P-0058938-T02-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50484347	57745718	Exon 9 of SMARCD1(+)	IGR: 83Kb before INHBC(+)	GRCh37	INVERSION	SMARCD1 (NM_003076) rearrangement: c.1107:SMARCD1_chr12:g.57745718inv	PRECISE		MANUAL_OK	5to5	-	7261371	NA	0	280	10	464
P-0059897-T01-IM7	SOMATIC	TP53	TP53	17	17	7590006	7591499	5-UTR of TP53(-):17Kb before coding start	Promoter of TP53(-):20Kb from tx start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-833_c.-29+689_del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1493	NA	0	6	10	6
P-0059963-T01-IM7	SOMATIC	CD74	CD74	5	5	54406039	149784684	3-UTR of GZMA(+):8Kb after coding stop	Exon 5 of CD74(-)	GRCh37	INVERSION	CD74 (NM_001025159) rearrangement: c.501:CD74_chr5:g.54406039inv	PRECISE		MANUAL_OK	5to5	-	95378645	NA	0	96	10	136
P-0059993-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157520023	161489584	Exon 17 of ARID1B(+)	Intron of MAP3K4(+):1Kb after exon 4	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.4092:ARID1B_chr6:g.161489584inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3969561	NA	0	47	10	47
P-0059996-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32910835	32945658	Exon 11 of BRCA2(+)	Intron of BRCA2(+):421bp after exon 20	GRCh37	DUPLICATION	BRCA2 (NM_000059) rearrangement: c.2343_c.8632+421dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	34823	NA	0	12	10	12
P-0060002-T01-IM7	SOMATIC	PIK3R2	PIK3R2	19	19	18271825	40785162	Intron of PIK3R2(+):38bp before exon 5	5-UTR of AKT2(-):45Kb before coding start	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement: c.467-39:PIK3R2_chr19:g.40785162del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	22513337	NA	0	48	10	51
P-0060014-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46119983	46123823	3-UTR of LINC00938(-):2Kb after coding stop	Intron of ARID2(+):3bp before exon 2	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.93-4:ARID2_chr12:g.46119983del	PRECISE		MANUAL_OK	3to5	-	3840	NA	0	49	10	51
P-0060014-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	15970187	15971227	Intron of NCOR1(-):1Kb after exon 32	Exon 32 of NCOR1(-)	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.4722_c.4741+1021del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1040	NA	0	57	0	62
P-0060021-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46170892	46298776	Intron of ARID2(+):34Kb before exon 4	Exon 21 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.285-34309_c.5423del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	127884	NA	0	10	10	10
P-0060055-T01-IM7	SOMATIC	RB1	RB1	13	13	49023195	49039256	Intron of RB1(+):4Kb before exon 18	Intron of RB1(+):9bp after exon 22	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1696-3934_c.2325+9dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	16061	NA	0	6	10	6
P-0060061-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47012888	47041632	Intron of RBM10(+):6Kb after exon 2	Exon 17 of RBM10(+)	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.212+5991_c.2052del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28744	NA	0	8	10	9
P-0060063-T01-IM7	SOMATIC	PTEN	PTEN	11	10	67359838	89681239	IGR: 9Kb before GSTP1(+)	Intron of PTEN(+):4Kb before exon 3	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;11)(q23.31;q13.2)(chr10:g.89681239::chr11:g.67359838)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	5	5
P-0060064-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48581377	51908806	Intron of SMAD4(+):14bp after exon 5	Promoter of C18orf54(+):25Kb from tx start	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.667+14:SMAD4_chr18:g.51908806del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SMAD4:C18orf54}	3327429	NA	0	52	10	52
P-0057387-T02-IM7	SOMATIC	EGFL7	EGFL7	9	9	139555554	139564718	5-UTR of EGFL7(+):12Kb before coding start	Exon 6 of EGFL7(+)	GRCh37	DELETION	EGFL7 (NM_201446) rearrangement: c.507:EGFL7_chr9:g.139555554del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9164	NA	0	25	10	25
P-0060027-T01-IM7	SOMATIC	FLT4	FLT4	5	5	179839423	180043891	IGR: 82Kb before CNOT6(+)	Intron of FLT4(-):8bp after exon 22	GRCh37	DELETION	FLT4 (NM_182925) rearrangement: c.3096+9:FLT4_chr5:g.179839423del	PRECISE		MANUAL_OK	3to5	-	204468	NA	0	6	10	6
P-0060027-T01-IM7	SOMATIC	NBN	NBN	8	8	90990609	91596943	Intron of NBN(-):58bp before exon 5	IGR: 8Kb before LINC01030(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.481-58:NBN_chr8:g.91596943inv	PRECISE		MANUAL_OK	3to3	-	606334	NA	0	5	9	5
P-0060028-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39817492	42870301	Exon 2 of ERG(-)	Intron of TMPRSS2(-):185bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-185:TMPRSS2_c.71:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3052809	NA	0	133	10	147
P-0060030-T01-IM7	SOMATIC	RB1	RB1	13	13	48920305	48923205	Intron of RB1(+):970bp after exon 4	Intron of RB1(+):46bp after exon 6	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.500+970_c.607+46dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	2900	NA	0	58	10	60
P-0060035-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	34483647	67586486	IGR: 173Kb before RAI14(+)	Intron of PIK3R1(+):2Kb before exon 8	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.917-1601:PIK3R1_chr5:g.34483647del	PRECISE		MANUAL_OK	3to5	-	33102839	NA	0	26	10	26
P-0060039-T01-IM7	SOMATIC	ZNF766	PPP2R1A	19	19	52716319	52780210	Exon 6 of PPP2R1A(+)	Intron of ZNF766(+):5Kb before exon 2	GRCh37	DUPLICATION	ZNF766 (NM_001010851) - PPP2R1A (NM_014225) rearrangement: c.19-5154:ZNF766_c.763:PPP2R1Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF766:PPP2R1A}	63891	NA	0	6	10	6
P-0060041-T01-IM7	SOMATIC	NAB2	NAB2	12	12	57485782	80798624	Intron of NAB2(+):1bp after exon 2	IGR: 40Kb before PTPRQ(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.957+1:NAB2_chr12:g.80798624inv	PRECISE		MANUAL_OK	3to3	-	23312842	NA	0	267	10	264
P-0060042-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18515563	18800677	Intron of PIK3C2G(+):9Kb before exon 12	Intron of PIK3C2G(+):132bp before exon 32	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.1626-8551_c.4186-133inv	PRECISE		MANUAL_OK	5to5	-	285114	NA	0	38	10	39
P-0060045-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27096649	27101401	Intron of ARID1A(+):960bp before exon 12	Exon 18 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3199-961_c.4683del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4752	NA	0	117	10	127
P-0060046-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971045	22115421	Exon 2 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):6Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.356:CDKN2A_chr9:g.22115421del	PRECISE		MANUAL_OK	3to5	-	144376	NA	0	57	10	58
P-0060111-T01-IM7	SOMATIC	CDK12	IKZF3	17	17	37682742	38000460	Intron of CDK12(+):173bp after exon 13	Intron of IKZF3(-):12Kb before exon 2	GRCh37	INVERSION	CDK12 (NM_016507) - IKZF3 (NM_012481) rearrangement: c.3760+173:CDK12_c.8-12056:IKZF3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CDK12:IKZF3}	317718	NA	0	7	5	7
P-0060111-T01-IM7	SOMATIC	STK11	STK11	19	19	1220182	1221725	Intron of STK11(+):189bp before exon 4	Intron of STK11(+):222bp before exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.465-190_c.863-223del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1543	NA	0	8	10	8
P-0060113-T01-IM7	SOMATIC	UPF1	UPF1	19	19	18960787	19252063	Intron of UPF1(+):96bp before exon 4	Promoter of TMEM161A(-):22Kb from tx start	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.462-97:UPF1_chr19:g.19252063inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TMEM161A:UPF1}	291276	NA	0	8	9	9
P-0060113-T01-IM7	SOMATIC	U2AF1	U2AF1	21	21	44519462	44521457	Intron of U2AF1(-):1Kb after exon 3	Intron of U2AF1(-):828bp before exon 3	GRCh37	DELETION	U2AF1 (NM_006758) rearrangement: c.133-828_c.199+1101del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1995	NA	0	12	10	12
P-0032111-T02-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	66096458	67202043	IGR: 3Kb before RIN1(-)	Intron of RPS6KB2(+):9bp before exon 14	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.1156-10:RPS6KB2_chr11:g.66096458inv	IMPPRECISE		MANUAL_OK	5to5	-	1105585	NA	0	295	0	466
P-0058619-T02-IM7	SOMATIC	AR	XRCC6P5	X	X	66909386	98113136	Intron of AR(+):3Kb after exon 3	IGR: 603Kb before XRCC6P5(-)	GRCh37	INVERSION	AR (NM_000044) rearrangement: c.1885+3418:AR_chrX:g.98113136inv	PRECISE		MANUAL_OK	3to3	-	31203750	NA	0	13	10	13
P-0059834-T02-IM7	SOMATIC	NF1	NF1	17	17	29605275	29667496	Intron of NF1(+):13Kb after exon 35	Intron of NF1(+):26bp before exon 46	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.4835+12918_c.6922-27inv	PRECISE		MANUAL_OK	5to5	-	62221	NA	0	24	10	27
P-0060015-T01-IM7	SOMATIC	IGFBP4	CDK12	17	17	37687228	38604113	Exon 14 of CDK12(+)	Intron of IGFBP4(+):4Kb after exon 1	GRCh37	DUPLICATION	IGFBP4 (NM_001552) - CDK12 (NM_016507) rearrangement: c.349+3777:IGFBP4_c.4132:CDK12dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IGFBP4:CDK12}	916885	NA	0	8	0	13
P-0060016-T01-IM7	SOMATIC	PBRM1	DEPTOR	8	3	120994421	52695598	Intron of DEPTOR(+):17Kb after exon 4	Intron of PBRM1(-):550bp after exon 5	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) - DEPTOR (NM_022783) rearrangement: t(3;8)(p21.1;q24.12)(chr3:g.52695598::chr8:g.120994421)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PBRM1:DEPTOR}	0	NA	0	11	10	13
P-0060148-T01-IM7	SOMATIC	EML4	ALK	2	2	29447757	42525256	Intron of ALK(-):569bp after exon 19	Intron of EML4(+):3Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2600:EML4_c.3172+570:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077499	NA	0	43	10	42
P-0060169-T01-IM7	SOMATIC	JAK3	JAK3	19	19	17946915	28900439	Intron of JAK3(-):55bp before exon 14	IGR: 26Kb before LOC100420587(-)	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.1787-55:JAK3_chr19:g.28900439inv	PRECISE		MANUAL_OK	5to5	-	10953524	NA	0	86	10	104
P-0060170-T01-IM7	SOMATIC	BCL6	NPHP3	3	3	132437539	187442915	Intron of NPHP3(-):298bp after exon 3	Intron of BCL6(-):49bp before exon 9	GRCh37	DELETION	BCL6 (NM_001706) - NPHP3 (NM_153240) rearrangement: c.1840-49:BCL6_c.670+299:NPHP3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BCL6:NPHP3}	55005376	NA	0	8	0	8
P-0009307-T02-IM7	SOMATIC	DNMT1	DNMT1	19	19	9570600	10265406	IGR: 6Kb before ZNF560(-)	Exon 20 of DNMT1(-)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.1640:DNMT1_chr19:g.9570600inv	PRECISE		MANUAL_OK	5to5	-	694806	NA	0	12	10	16
P-0009307-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55240897	55269403	Intron of EGFR(+):80bp after exon 17	Intron of EGFR(+):24bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2061+80_c.3115-25dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28506	NA	0	12	10	13
P-0048335-T03-IM7	SOMATIC	EWSR1	WT1	22	11	29687605	32416936	Intron of EWSR1(+):17bp after exon 10	Intron of WT1(-):866bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416936::chr22:g.29687605)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	94	0	94
P-0050374-T01-IM7	SOMATIC	POT1	POT1	7	7	124498477	124537224	Intron of POT1(-):533bp after exon 9	Exon 5 of POT1(-)	GRCh37	DELETION	POT1 (NM_015450) rearrangement: c.702+534_c.4del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	38747	NA	0	18	10	18
P-0052363-T02-IM7	SOMATIC	MACF1	MTOR	1	1	11175034	39949500	Intron of MTOR(-):90bp before exon 52	Intron of MACF1(+):772bp before exon 92	GRCh37	INVERSION	MACF1 (NM_012090) - MTOR (NM_004958) rearrangement: c.15907-773:MACF1_c.7090-90:MTORinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MACF1:MTOR}	28774466	NA	0	14	10	14
P-0052363-T02-IM7	SOMATIC	CD74	ROS1	6	5	117647256	149783700	Intron of ROS1(-):130bp after exon 33	Intron of CD74(-):542bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783700::chr6:g.117647256)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	18	0	19
P-0057588-T03-IM7	SOMATIC	DROSHA	DROSHA	5	5	31401596	31404334	Exon 35 of DROSHA(-)	Intron of DROSHA(-):1Kb after exon 34	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.3994+1450_c.4068del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2738	NA	0	16	10	16
P-0059248-T02-IM7	SOMATIC	FGFR2	BICC1	10	10	60455647	123239301	Intron of BICC1(+):6Kb before exon 3	3-UTR of FGFR2(-):69bp after coding stop	GRCh37	INVERSION	FGFR2 (NM_000141) -BICC1(NM_001080512)rearrangement : c.*70:FGFR2_c.238-6187:BICC1inv	PRECISE		MANUAL_OK	5to5	-	62783654	NA	1	62	10	75
P-0059248-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63851788	78095915	Exon 10 of ARID5B(+)	Intron of C10orf11(+):12Kb after exon 5	GRCh37	INVERSION	ARID5B (NM_032199) rearrangement: c.2566:ARID5B_chr10:g.78095915inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	14244127	NA	0	19	10	19
P-0059468-T02-IM7	SOMATIC	KDM5C	KDM5C	X	X	53221886	53223532	3-UTR of KDM5C(-):262bp after coding stop	Exon 23 of KDM5C(-)	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.3827:KDM5C_chrX:g.53221886inv	PRECISE		MANUAL_OK	5to5	-	1646	NA	0	43	10	62
P-0059985-T01-IM7	SOMATIC	GNB1	GNB1	1	1	1738154	203571493	Intron of GNB1(-):177bp before exon 6	IGR: 24Kb before ATP2B4(+)	GRCh37	INVERSION	GNB1 (NM_002074) rearrangement: c.204-177:GNB1_chr1:g.203571493inv	PRECISE		MANUAL_OK	3to3	-	201833339	NA	0	5	8	3
P-0059985-T01-IM7	SOMATIC	MED12	MED12	X	X	70356629	70361089	Intron of MED12(+):99bp before exon 38	Exon 43 of MED12(+)	GRCh37	DUPLICATION	MED12 (NM_005120) rearrangement: c.5401-100_c.6277dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4460	NA	0	11	10	12
P-0060076-T02-IM7	SOMATIC	RECQL	RECQL	12	12	21625944	21628781	Intron of RECQL(-):540bp after exon 12	Intron of RECQL(-):23bp before exon 9	GRCh37	DUPLICATION	RECQL (NM_032941) rearrangement: c.950-23_c.1447+541dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	2837	NA	0	5	10	5
P-0060161-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935300	42877348	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2529:TMPRSS2_c.39+12286:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2942048	NA	0	25	0	26
P-0060195-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12043198	12145758	Exon 10 of MAP2K4(+)	IGR: 161Kb before MIR744(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.1083:MAP2K4_chr17:g.12145758del	PRECISE		MANUAL_OK	3to5	-	102560	NA	0	20	10	20
P-0060197-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120457573	120458970	3-UTR of NOTCH2(-):355bp after coding stop	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.6375:NOTCH2_chr1:g.120457573inv	PRECISE		MANUAL_OK	5to5	-	1397	NA	0	49	10	62
P-0060204-T01-IM7	SOMATIC	STAT3	STAT3	17	3	40483618	172151230	Intron of STAT3(-):69bp before exon 11	IGR: 10Kb before GHSR(-)	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(3;17)(q26.31;q21.2)(chr3:g.172151230::chr17:g.40483618)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	146	10	152
P-0060207-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39868977	42871230	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1114:TMPRSS2_c.18+1310:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3002253	NA	0	25	10	27
P-0060208-T01-IM7	SOMATIC	DNMT3A	DNMT3A	2	2	25464544	26981011	Exon 17 of DNMT3A(-)	IGR: 6Kb before SLC35F6(+)	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c.1969:DNMT3A_chr2:g.26981011del	PRECISE		MANUAL_OK	3to5	-	1516467	NA	0	4	10	4
P-0060209-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42838823	42839675	Intron of TMPRSS2(-):743bp before exon 14	Exon 13 of TMPRSS2(-)	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.1564_c.1579-743inv	PRECISE		MANUAL_OK	3to3	-	852	NA	0	42	10	42
P-0060240-T01-IM7	SOMATIC	RALGAPA2	CDKN2A	20	9	20679574	21968736	Intron of RALGAPA2(-):13Kb after exon 1	Exon 3 of CDKN2A(-)	GRCh37	TRANSLOCATION	RALGAPA2 (NM_020343) - CDKN2A (NM_000077) rearrangement: t(9;20)(p21.3;p11.23)(chr9:g.21968736::chr20:g.20679574)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RALGAPA2:CDKN2A}	0	NA	0	31	10	29
P-0060242-T01-IM7	SOMATIC	NOTCH4	NOTCH4	10	6	124117658	32163295	IGR: 16Kb before PLEKHA1(+)	Exon 30 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;10)(p21.32;q26.13)(chr6:g.32163295::chr10:g.124117658)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	25	10	26
P-0060245-T01-IM7	SOMATIC	FGFR2	BICC1	10	10	60554478	123239377	Intron of BICC1(+):1Kb after exon 9	Exon 18 of FGFR2(-)	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2460:FGFR2_c.1179+1103:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR2:BICC1}	62684899	NA	0	74	10	105
P-0060249-T01-IM7	SOMATIC	SH2B3	SH2B3	12	12	62868506	111860851	Intron of MON2(+):7Kb after exon 1	Intron of SH2B3(+):4Kb after exon 2	GRCh37	INVERSION	SH2B3 (NM_005475) rearrangement: c.732+4170:SH2B3_chr12:g.62868506inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	48992345	NA	0	9	10	9
P-0060249-T01-IM7	SOMATIC	ZNF93	NOTCH3	19	19	15300191	20020964	Exon 7 of NOTCH3(-)	Intron of ZNF93(+):5Kb before exon 2	GRCh37	INVERSION	ZNF93 (NM_031218) - NOTCH3 (NM_000435) rearrangement: c.4-5125:ZNF93_c.1085:NOTCH3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ZNF93:NOTCH3}	4720773	NA	0	49	10	48
P-0060249-T01-IM7	SOMATIC	BRD4	BRD4	19	6	15378181	120477681	Intron of BRD4(-):45bp after exon 4	IGR: 704Kb before LOC285762(-)	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(6;19)(q22.31;p13.12)(chr6:g.120477681::chr19:g.15378181)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	22
P-0060253-T01-IM7	SOMATIC	MED12	MED12	X	X	70355052	70361330	Exon 36 of MED12(+)	Intron of MED12(+):110bp after exon 43	GRCh37	DUPLICATION	MED12 (NM_005120) rearrangement: c.4974_c.6408+110dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6278	NA	0	45	10	45
P-0060260-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89626726	89720594	Intron of PTEN(+):2Kb after exon 1	Intron of PTEN(+):56bp before exon 8	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.79+2421_c.802-57del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	93868	NA	0	9	10	11
P-0060260-T01-IM7	SOMATIC	ESR1	ESR1	6	6	151963457	152265362	IGR: 48Kb before ESR1(+)	Exon 5 of ESR1(+)	GRCh37	DELETION	ESR1 (NM_001122740) rearrangement: c.815:ESR1_chr6:g.151963457del	PRECISE		MANUAL_OK	3to5	-	301905	NA	0	40	10	42
P-0041967-T02-IM7	SOMATIC	EML4	ALK	2	2	29448147	42523103	Intron of ALK(-):179bp after exon 19	Intron of EML4(+):447bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+447:EML4_c.3172+180:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13074956	NA	0	58	10	55
P-0060283-T01-IM7	SOMATIC	PCBP3	CREBBP	21	16	47334255	3827655	Intron of PCBP3(+):3Kb before exon 8	Exon 11 of CREBBP(-)	GRCh37	TRANSLOCATION	PCBP3 (NM_020528) - CREBBP (NM_004380) rearrangement: t(16;21)(p13.3;q22.3)(chr16:g.3827655::chr21:g.47334255)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PCBP3:CREBBP}	0	NA	0	32	10	32
P-0060231-T01-IM7	SOMATIC	CCNE1	CCNE1	19	19	30311714	33688750	Exon 7 of CCNE1(+)	Intron of LRP3(+):1Kb after exon 2	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.568:CCNE1_chr19:g.33688750inv	PRECISE		MANUAL_OK	5to5	-	3377036	NA	0	17	10	19
P-0060231-T01-IM7	SOMATIC	RICTOR	RICTOR	5	3	38953451	55789118	Intron of RICTOR(-):111bp after exon 28	Intron of ERC2(-):20Kb before exon 14	GRCh37	TRANSLOCATION	RICTOR (NM_152756) rearrangement: t(3;5)(p14.3;p13.1)(chr3:g.55789118::chr5:g.38953451)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	6	10	6
P-0060231-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139086788	139403259	Promoter of LHX3(-):1Kb from tx start	Intron of NOTCH1(-):62bp after exon 19	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.3171+63:NOTCH1_chr9:g.139086788del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NOTCH1:LHX3}	316471	NA	0	28	10	28
P-0060235-T01-IM7	SOMATIC	POLE	POLE	12	12	133225490	133227982	Intron of POLE(-):24bp after exon 32	Intron of POLE(-):2Kb before exon 30	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.3583-1507_c.4149+25del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2492	NA	0	4	10	4
P-0060134-T01-IM7	SOMATIC	SPEN	IL23R	1	1	16203146	67680474	Exon 3 of SPEN(+)	Intron of IL23R(+):5Kb before exon 7	GRCh37	DELETION	SPEN (NM_015001) - IL23R (NM_144701) rearrangement: c.854:SPEN_c.799-4783:IL23Rdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SPEN:IL23R}	51477328	NA	0	10	10	12
P-0060134-T01-IM7	SOMATIC	KMT2B	ACPT	19	19	36224616	51294806	Intron of KMT2B(+):29bp after exon 29	Intron of ACPT(+):106bp before exon 4	GRCh37	DELETION	KMT2B (NM_014727) - ACPT (NM_033068) rearrangement: c.7049+29:KMT2B_c.304-107:ACPTdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KMT2B:ACPT}	15070190	NA	0	30	10	31
P-0013793-T02-IM7	SOMATIC	NAB2	NAB2	12	12	57486630	72000885	Intron of NAB2(+):69bp before exon 4	Promoter of ZFC3H1(-):2Kb from tx start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1092-70:NAB2_chr12:g.72000885inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NAB2:ZFC3H1}	14514255	60	0	119	10	118
P-0013793-T02-IM7	SOMATIC	ATRX	ATRX	X	X	76871966	83516375	Intron of ATRX(-):114bp after exon 22	IGR: 57Kb before HDX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.5566+115:ATRX_chrX:g.83516375inv	PRECISE		MANUAL_OK	5to5	-	6644409	60	0	8	10	8
P-0029539-T02-IM7	SOMATIC	RRAS	RRAS	19	5	50139900	12569365	Exon 4 of RRAS(-)	IGR: 6Kb before LINC01194(+)	GRCh37	TRANSLOCATION	RRAS (NM_006270) rearrangement: t(5;19)(p15.2;q13.33)(chr5:g.12569365::chr19:g.50139900)	PRECISE		MANUAL_OK	3to5	-	0	60	0	23	10	23
P-0031415-T02-IM7	SOMATIC	FLCN	COPS3	17	17	17124640	17166517	Intron of FLCN(-):210bp after exon 8	Intron of COPS3(-):1Kb before exon 7	GRCh37	DUPLICATION	FLCN (NM_144997) - COPS3 (NM_003653) rearrangement: c.871+211:FLCN_c.622-1097:COPS3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FLCN:COPS3}	41877	NA	0	51	10	62
P-0034694-T03-IM7	SOMATIC	APC	APC	5	5	20611790	112179293	IGR: 848Kb before GUSBP1(+)	Exon 16 of APC(+)	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.8002:APC_chr5:g.20611790inv	PRECISE		MANUAL_OK	5to5	-	91567503	60	0	41	10	47
P-0059938-T02-IM7	SOMATIC	RB1	ERCC5	13	13	48879154	103518282	Intron of RB1(+):969bp after exon 1	Intron of ERCC5(+):21bp after exon 9	GRCh37	INVERSION	RB1 (NM_000321) - ERCC5 (NM_000123) rearrangement: c.137+969:RB1_c.2199+21:ERCC5inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	54639128	NA	0	111	10	111
P-0059938-T03-IM7	SOMATIC	RB1	ERCC5	13	13	48879154	103518282	Intron of RB1(+):969bp after exon 1	Intron of ERCC5(+):21bp after exon 9	GRCh37	INVERSION	RB1 (NM_000321) - ERCC5 (NM_000123) rearrangement: c.137+969:RB1_c.2199+21:ERCC5inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	54639128	NA	0	161	10	161
P-0059938-T03-IM7	SOMATIC	DPP10	PAX8	2	2	113993039	116477243	Exon 9 of PAX8(-)	Intron of DPP10(+):8Kb before exon 8	GRCh37	INVERSION	DPP10 (NM_001178034) - PAX8 (NM_003466) rearrangement: c.589-8149:DPP10_c.1019:PAX8inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {DPP10:PAX8}	2484204	NA	0	9	10	8
P-0059971-T01-IM7	SOMATIC	ETV6	ETV6	12	12	11894135	12010850	Intron of ETV6(+):11Kb before exon 2	Intron of ETV6(+):4Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.34-11249_c.463+4355dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	116715	NA	0	82	0	89
P-0059971-T01-IM7	SOMATIC	STAT3	STAT3	17	17	40481105	40490834	Intron of STAT3(-):322bp after exon 14	Intron of STAT3(-):4bp before exon 6	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.469-4_c.1281+323dup	PRECISE		MANUAL_OK	5to3	Duplication of 9 exons : in frame	9729	NA	0	58	10	59
P-0060177-T02-IM7	SOMATIC	FGFR2	FGFR2	10	10	123043518	123240667	IGR: 194Kb before FGFR2(-)	Intron of FGFR2(-):1Kb before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-1132:FGFR2_chr10:g.123043518del	PRECISE		MANUAL_OK	3to5	-	197149	NA	0	79	10	81
P-0060261-T01-IM7	SOMATIC	B2M	B2M	15	15	44979979	45007725	IGR: 22Kb before PATL2(-)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.172:B2M_chr15:g.44979979del	PRECISE		MANUAL_OK	3to5	-	27746	22	0	4	10	10
P-0060261-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11120768	11150097	Intron of SMARCA4(+):288bp before exon 15	Intron of SMARCA4(+):36bp before exon 30	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2124-289_c.4171-1886del	PRECISE		MANUAL_OK	3to5	Deletion of 15 exons : out of frame	29329	40	0	15	10	17
P-0060263-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47675336	62488800	Intron of MSH2(+):3Kb after exon 8	IGR: 56Kb before MIR5192(+)	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.1386+2540:MSH2_chr2:g.62488800inv	PRECISE		MANUAL_OK	3to3	-	14813464	60	0	25	10	25
P-0060263-T01-IM7	SOMATIC	NF2	NF2	22	2	30051490	73594692	Intron of NF2(+):92bp before exon 6	IGR: 18Kb before ALMS1(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(2;22)(p13.1;q12.2)(chr2:g.73594692::chr22:g.30051490)	PRECISE		MANUAL_OK	5to5	-	0	60	0	27	10	28
P-0060290-T02-IM7	SOMATIC	VTCN1	VTCN1	1	1	117752871	117761617	Intron of VTCN1(-):574bp after exon 1	IGR: 75Kb before VTCN1(-)	GRCh37	DELETION	VTCN1 (NM_024626) rearrangement: c.32+575:VTCN1_chr1:g.117761617del	PRECISE		MANUAL_OK	3to5	-	8746	NA	0	3	10	8
P-0060290-T02-IM7	SOMATIC	TBX3	TBX3	12	12	76342689	115112267	IGR: 77Kb before PHLDA1(-)	Exon 7 of TBX3(-)	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.1473:TBX3_chr12:g.76342689inv	PRECISE		MANUAL_OK	3to3	-	38769578	NA	0	18	10	18
P-0060297-T01-IM7	SOMATIC	MEN1	MEN1	17	11	64292489	64573788	IGR: 6Kb before PRKCA(+)	Exon 7 of MEN1(-)	GRCh37	TRANSLOCATION	MEN1 (NM_000244) rearrangement: t(11;17)(q13.1;q24.2)(chr11:g.64573788::chr17:g.64292489)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	57	10	59
P-0060301-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48573549	48680242	Exon 2 of SMAD4(+)	IGR: 21Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.133:SMAD4_chr18:g.48680242del	PRECISE		MANUAL_OK	3to5	-	106693	NA	0	27	10	26
P-0058935-T02-IM7	SOMATIC	CD74	NRG1	8	5	32574604	149783327	Intron of NRG1(+):11Kb before exon 6	Intron of CD74(-):452bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) fusion: t(5;8)(q32;p12)(chr5:g.149783327::chr8:g.32574604)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD74:NRG1}	0	NA	0	11	10	11
P-0059970-T01-IM7	SOMATIC	UPF1	UPF1	19	19	18946631	18957139	Intron of UPF1(+):3Kb after exon 1	Intron of UPF1(+):211bp after exon 2	GRCh37	DUPLICATION	UPF1 (NM_002911) rearrangement: c.231+3382_c.371+211dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	10508	NA	0	33	10	34
P-0050573-T02-IM7	SOMATIC	BLM	BLM	15	8	91354475	129297841	Exon 21 of BLM(+)	IGR: 120Kb before LINC00824(-)	GRCh37	TRANSLOCATION	BLM (NM_000057) rearrangement: t(8;15)(q24.21;q26.1)(chr8:g.129297841::chr15:g.91354475)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	35	10	37
P-0050573-T02-IM7	SOMATIC	ATR	ATR	3	3	142272339	142507912	Intron of ATR(-):99bp before exon 13	Intron of TRPC1(+):2Kb before exon 7	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.2634-99:ATR_chr3:g.142507912del	IMPPRECISE		MANUAL_OK	3to5	-	235573	NA	0	9	0	8
P-0060392-T01-IM7	SOMATIC	YAP1	YAP1	11	8	101982030	28938823	Intron of YAP1(+):130bp after exon 1	Intron of KIF13B(-):6Kb before exon 38	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(8;11)(p12;q22.1)(chr8:g.28938823::chr11:g.101982030)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	69	10	70
P-0060392-T01-IM7	SOMATIC	FOXO1	FOXO1	13	1	41134934	233059025	Exon 2 of FOXO1(-)	IGR: 27Kb before NTPCR(+)	GRCh37	TRANSLOCATION	FOXO1 (NM_002015) rearrangement: t(1;13)(q42.2;q14.11)(chr1:g.233059025::chr13:g.41134934)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	89	10	94
P-0060392-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38273349	40346239	Intron of FGFR1(-):38bp after exon 14	IGR: 42Kb before ZMAT4(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.1947+39:FGFR1_chr8:g.40346239inv	PRECISE		MANUAL_OK	3to3	-	2072890	NA	0	20	10	23
P-0060394-T01-IM7	SOMATIC	PDSS2	FYN	6	6	107517927	112024127	Intron of PDSS2(-):3Kb before exon 7	Exon 5 of FYN(-)	GRCh37	DUPLICATION	PDSS2 (NM_020381) - FYN (NM_153047) rearrangement: c.1009-2869:PDSS2_c.658:FYNdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PDSS2:FYN}	4506200	NA	0	22	10	22
P-0060410-T01-IM7	SOMATIC	PKD1L1	APC	7	5	47865157	112175789	Intron of PKD1L1(-):2Kb after exon 45	Exon 16 of APC(+)	GRCh37	TRANSLOCATION	PKD1L1 (NM_138295) - APC (NM_000038) rearrangement: t(5;7)(q22.2;p12.3)(chr5:g.112175789::chr7:g.47865157)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PKD1L1:APC}	0	NA	0	44	10	56
P-0060082-T02-IM7	SOMATIC	NAB2	NAB2	12	12	57486992	66271867	Intron of NAB2(+):14bp after exon 5	Intron of HMGA2(+):40Kb after exon 3	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1276+14:NAB2_chr12:g.66271867inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8784875	NA	0	38	10	38
P-0060406-T01-IM7	SOMATIC	PRKCI	PRKCI	3	3	168083253	170009781	5-UTR of EGFEM1P(+):465Kb before coding start	Intron of PRKCI(+):52bp after exon 13	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: c.1291+52:PRKCI_chr3:g.168083253inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1926528	NA	0	8	0	8
P-0060408-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39841878	42876301	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3576:TMPRSS2_c.19-24334:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3034423	NA	0	44	10	46
P-0001652-T01-IM3	SOMATIC	EWSR1	CREB3L1	22	11	29686428	46332622	Exon 9 of EWSR1(+)	Exon 5 of CREB3L1(+)	GRCh37	TRANSLOCATION		PRECISE		AUTO_OK	3to5	Protein fusion: mid-exon (EWSR1-CREB3L1)	0	NA	0	5	9	0
P-0004901-T01-IM5	SOMATIC	CCDC6	RET	10	10	43611729	61653032	Intron of RET(+): 303bp before exon 12	Intron of CCDC6(-): 13Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) reciprocal fusion (CCDC6 exon1 with RET exons 12-20) : :CCDC6_:RETinv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (CCDC6-RET)	18041303	NA	0	102	115	144
P-0008030-T01-IM5	SOMATIC	EWSR1	FLI1	22	11	29685491	128647136	Intron of EWSR1(+): 716bp after exon 7	Intron of FLI1(+): 4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 with FLI1 exons 5-9): t(11;22)(11q24.3;q12.2)(chr11:g.128647136::chr22:g.29685491)	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (EWSR1-FLI1)	0	NA	0	31	18	30
P-0008099-T02-IM6	SOMATIC	KDM5A	KDM5A	12	12	401994	404333	Exon 27 of KDM5A(-)	Intron of KDM5A(-):405bp after exon 26	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement : c.4455+404_4798inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2339	NA	0	57	10	63
P-0009877-T04-IM7	SOMATIC	BRAF	BRAF	7	7	140482249	140549721	Intron of BRAF(-):571bp after exon 10	Intron of BRAF(-):189bp after exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.240+190_c.1314+572del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	67472	NA	0	51	10	52
P-0011048-T03-IM7	SOMATIC	ETV6	PPIL2	22	12	22041885	12038844	Intron of PPIL2(+):46bp before exon 13	Intron of ETV6(+):15bp before exon 7	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - PPIL2 (NM_014337) rearrangement: t(12;22)(p13.2;q11.21)(chr12:g.12038844::chr22:g.22041885)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ETV6:PPIL2}	0	NA	0	13	10	13
P-0013060-T02-IM6	SOMATIC	KIAA1244	TNFAIP3	6	6	138197106	138525055	Intron of TNFAIP3(+):26bp before exon 5	Intron of KIAA1244(+):3Kb before exon 3	GRCh37	DUPLICATION	KIAA1244 (NM_020340) - TNFAIP3 (NM_006290) rearrangement: c.138-3124:KIAA1244_c.635-27:TNFAIP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KIAA1244:TNFAIP3}	327949	NA	0	19	10	19
P-0014595-T01-IM6	SOMATIC	RB1	RB1	17	13	7541457	48916736	IGR: 5Kb after SHBG(+)	Exon 3 of RB1(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;17)(q14.2;q13.1)(chr13:g.48916736::chr17:g.7541457)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	36	14	35
P-0014595-T01-IM6	SOMATIC	MITF	MITF	3	3	69988253	69991517	Exon 4 of MITF(+)	Intron of MITF(+): 1Kb after exon 5	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.587_c.762+1035inv	PRECISE		MANUAL_OK	3to3	Antisense fusion	3264	NA	0	6	19	6
P-0015058-T03-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861753	42870567	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):451bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-451:TMPRSS2_c.18+8534:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008814	NA	0	173	10	178
P-0015058-T03-IM6	SOMATIC	CENPE	FAM175A	4	4	84390340	104032264	Intron of FAM175A(-):36bp before exon 6	Intron of CENPE(-):96bp before exon 45	GRCh37	DELETION	CENPE (NM_001813) - FAM175A (NM_139076) rearrangement: c.7541-96:CENPE_c.477-36:FAM175Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CENPE:FAM175A}	19641924	NA	0	52	10	61
P-0016837-T02-IM6	SOMATIC	STAT3	STAT3	17	17	40498620	80750701	Exon 3 of STAT3(-)	Intron of TBCD(+):5Kb before exon 8	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.240:STAT3_chr17:g.80750701del	PRECISE		MANUAL_OK	3to5	-	40252081	NA	0	4	8	4
P-0016886-T01-IM6	SOMATIC	SETD2	GNB4	3	3	47139459	179162435	Exon 9 of SETD2(-)	5-UTR of GNB4(-):43Kb before coding start	GRCh37	DUPLICATION	SETD2 (NM_014159) - GNB4 (NM_021629) Rearrangement : c.5128:SETD2_c.-43+6699:GNB4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SETD2:GNB4}	132022976	NA	0	25	10	27
P-0021000-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63525528	63533095	3-UTR of AXIN2(-):565bp after coding stop	Exon 7 of AXIN2(-)	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.*566_c.1799del	PRECISE		MANUAL_OK	3to5	-	7567	NA	0	3	5	3
P-0021836-T01-IM6	SOMATIC	DOT1L	DOT1L	19	3	2226633	53080073	Exon 27 of DOT1L(+)	5-UTR of SFMBT1(-):141Kb before coding start	GRCh37	TRANSLOCATION	DOT1L (NM_032482) Rearrangement : t(3,19)(p21.1,p13.3)(chr3:g.53080073::chr19:g.2226633)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	30	10	37
P-0025095-T01-IM6	SOMATIC	EML4	ALK	2	2	29447321	42553016	Intron of ALK(-):927bp before exon 20	Intron of EML4(+):277bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-20 fused to ALK exons 20 -29): c.2243-278:EML4_c.3173-927:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13105695	NA	0	49	10	49
P-0025396-T02-IM6	SOMATIC	KSR1	NF1	17	17	25912019	29557697	Intron of KSR1(+):2Kb after exon 5	Intron of NF1(+):162bp before exon 24	GRCh37	DELETION	KSR1 (NM_014238) - NF1 (NM_001042492) rearrangement: c.570-664:KSR1_c.3114-163:NF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KSR1:NF1}	3645678	NA	0	14	10	17
P-0025396-T02-IM6	SOMATIC	NF1	NF1	17	3	29559104	69238320	Exon 25 of NF1(+)	Intron of FRMD4B(-):726bp after exon 18	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(3;17)(p14.1;q11.2)(chr3:g.69238320::chr17:g.29559104)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FRMD4B:NF1}	0	NA	0	18	10	37
P-0027293-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39894658	42870542	Intron of ERG(-):53Kb after exon 3	Intron of TMPRSS2(-):426bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-426:TMPRSS2_c.39+52928:ERGinv	PRECISE		MANUAL_OK	3to3	-	2975884	NA	0	47	10	46
P-0031217-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11097106	11139926	Exon 4 of SMARCA4(+)	Intron of SMARCA4(+):1Kb after exon 24	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.597_c.3382+1300del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	42820	NA	0	18	10	20
P-0031217-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	12995615	15296440	3-UTR of KLF1(-):83bp after coding stop	Exon 13 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2002:NOTCH3_chr19:g.12995615del	PRECISE		MANUAL_OK	3to5	-	2300825	NA	0	146	10	160
P-0031217-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15375708	15386105	Intron of BRD4(-):131bp before exon 6	5-UTR of BRD4(-):37Kb before coding start	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.850-131:BRD4_chr19:g.15386105del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	10397	NA	0	12	10	12
P-0031439-T02-IM6	SOMATIC	TRIM33	CSDE1	1	1	114975180	115273042	Intron of TRIM33(-):1Kb after exon 5	Exon 13 of CSDE1(-)	GRCh37	DUPLICATION	TRIM33 (NM_015906) -  CSDE1 (NM_001242891) rearrangement: c.1040+105:TRIM33_c.1331:CSDE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRIM33:CSDE1}	297862	NA	0	8	10	30
P-0032299-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55122038	55223163	Intron of EGFR(+):35Kb after exon 1	Intron of EGFR(+):359bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+34980_c.890-360del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	101125	NA	0	61	0	385
P-0032339-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488938	57495349	3-UTR of NAB2(+):6Kb after coding stop	Intron of STAT6(-):723bp after exon 13	GRCh37	INVERSION	NAB2(NM_005967) - STAT6(NM_003153) Rearrangement: c.*434:NAB2_c.1512+724:STAT6inv	PRECISE		MANUAL_OK	5to5	-	6411	NA	0	51	10	108
P-0032339-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11071791	11118488	5-UTR of SMARCA4(+):23Kb before coding start	Intron of SMARCA4(+):89bp before exon 14	GRCh37	DELETION	SMARCA4(NM_003072) Rearrangement: c.-89_c.2002-30del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	46697	NA	0	21	10	21
P-0032352-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39849794	42869632	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):413bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exons 1-2 fused with ERG exons 2-10): c.126+414:TMPRSS2_c.18+20493:ERG	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3019838	NA	0	50	10	51
P-0033856-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70120494	70485069	Exon 3 of SOX9(+)	3-UTR of LINC00673(-):104Kb after coding stop	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: c.1496:SOX9_chr17:g.70485069del	PRECISE		MANUAL_OK	3to5	-	364575	NA	0	5	8	5
P-0033879-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67200869	67203156	Exon 10 of RPS6KB2(+)	Promoter of RPS6KB2(+):7Kb from tx start	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.857_c.*516del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2287	NA	0	8	10	8
P-0037022-T01-IM6	SOMATIC	HRAS	HRAS	11	9	533931	124685061	Exon 3 of HRAS(-)	Intron of TTLL11(-):51Kb after exon 6	GRCh37	TRANSLOCATION	HRAS (NM_001130442) rearrangement: t(9;11)(q33.2;p15.5)(chr9:g.124685061::chr11:g.533931)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	6
P-0037022-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887929	42872219	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2103:TMPRSS2_c.39+59657:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2984290	NA	0	52	10	54
P-0037022-T01-IM6	SOMATIC	LACE1	ROS1	6	6	108749238	117660863	Intron of LACE1(+):19Kb before exon 8	Intron of ROS1(-):1Kb after exon 30	GRCh37	INVERSION	LACE1 (NM_145315) - ROS1 (NM_002944) rearrangement: c.808-19179:LACE1_c.5079+1435:ROS1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {LACE1:ROS1}	8911625	NA	0	3	10	4
P-0037028-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67333415	67457554	IGR: 25Kb before SMAD3(+)	Intron of SMAD3(+):36bp before exon 3	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.401-37:SMAD3_chr15:g.67333415del	PRECISE		MANUAL_OK	3to5	-	124139	NA	0	72	10	74
P-0037032-T01-IM6	SOMATIC	APC	APC	5	5	112178049	112179982	Exon 16 of APC(+)	3-UTR of APC(+):89Kb after coding stop	GRCh37	INVERSION	APC (NM_000038) rearrangement: c.6758_c.*159del	PRECISE		MANUAL_OK	5to5	-	1933	NA	0	3	10	3
P-0037105-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162394398	162454146	Exon 6 of PARK2(-)	Intron of PARK2(-):21Kb after exon 5	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.618+20977_c.670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	59748	NA	0	17	10	18
P-0037120-T01-IM6	SOMATIC	DROSHA	DROSHA	8	5	97865366	31485128	Intron of CPQ(+):18Kb after exon 3	Intron of DROSHA(-):59bp before exon 14	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;8)(p13.3;q22.1)(chr5:g.31485128::chr8:g.97865366)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	42	10	45
P-0037167-T01-IM6	SOMATIC	ERBB2	CDK12	17	17	37673710	37881361	Exon 10 of CDK12(+)	Exon 21 of ERBB2(+)	GRCh37	DUPLICATION	ERBB2 (NM_004448) - CDK12 (NM_016507) rearrangement: c.2553:ERBB2_c.2864:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB2:CDK12}	207651	NA	0	93	10	98
P-0037241-T01-IM6	SOMATIC	RRAS	KCNU1	19	8	50138888	36722354	Exon 6 of RRAS(-)	Intron of KCNU1(+):315bp after exon 19	GRCh37	TRANSLOCATION	RRAS (NM_006270) - KCNU1 (NM_001031836) rearrangement: t(8;19)(p11.23)(q.13.33)(chr8:g.36722354::chr19:g.50138888)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RRAS:KCNU1}	0	NA	0	6	10	6
P-0037307-T01-IM6	SOMATIC	ARID2	TWF1	12	12	44194847	46285828	Intron of TWF1(-):514bp before exon 4	Exon 18 of ARID2(+)	GRCh37	INVERSION	ARID2 (NM_152641) - TWF1 (NM_001242397) rearrangement: c.5096:ARID2_c.283-514:TWF1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ARID2:TWF1}	2090981	NA	0	55	10	55
P-0037317-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37882206	41543982	Intron of ERBB2(+):100bp after exon 23	IGR: 17Kb before DHX8(+)	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.2872+100:ERBB2_chr17:g.41543982inv	PRECISE		MANUAL_OK	3to3	-	3661776	NA	0	6	10	7
P-0037344-T01-IM6	SOMATIC	CSF1R	SDR9C7	12	5	57323670	149460302	Intron of SDR9C7(-):333bp before exon 3	Intron of CSF1R(-):27bp after exon 3	GRCh37	TRANSLOCATION	CSF1R (NM_005211) - SDR9C7 (NM_148897) rearrangement: t(5;12)(q32;q13.3)(chr5:g.149460302::chr12:g.57323670)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CSF1R:SDR9C7}	0	NA	0	52	10	53
P-0037389-T01-IM6	SOMATIC	GLI1	GLI1	12	12	47430985	57864277	IGR: 39Kb before AMIGO2(-)	Exon 12 of GLI1(+)	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: c.1754:GLI1_chr12:g.47430985del	PRECISE		MANUAL_OK	3to5	-	10433292	NA	0	50	10	53
P-0037392-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2124120	2126245	Intron of TSC2(+):80bp before exon 22	Intron of TSC2(+):74bp after exon 24	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.2356-81_c.2742+74del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2125	NA	0	22	10	24
P-0037409-T01-IM6	SOMATIC	ARID5B	KDM2B	12	10	121894267	63760134	Intron of KDM2B(-):3Kb before exon 13	Intron of ARID5B(+):54bp after exon 4	GRCh37	TRANSLOCATION	ARID5B (NM_032199) - KDM2B (NM_032590) rearrangement: t(10;12)(q21.2;q24.31)(chr10:g.63760134::chr12:g.121894267)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ARID5B:KDM2B}	0	NA	0	38	10	37
P-0037409-T01-IM6	SOMATIC	DOT1L	DOT1L	22	19	37994256	2217933	IGR: 10Kb before GGA1(+)	Intron of DOT1L(+):16bp after exon 22	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(19;22)(p13.3;q13.1)(chr19:g.2217933::chr22:g.37994256)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	5	0	5
P-0037409-T01-IM6	SOMATIC	ST7	MET	7	7	116414364	116739162	Intron of MET(+):570bp before exon 15	Intron of ST7(+):653bp before exon 2	GRCh37	DUPLICATION	ST7 (NM_021908) - MET (NM_000245) rearrangement: c.152-654:ST7_c.3029-571:METdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ST7:MET}	324798	NA	0	6	10	7
P-0037461-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31021336	31472710	Exon 11 of ASXL1(+)	IGR: 65Kb before MAPRE1(+)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.1335:ASXL1_chr20:g.31472710del	PRECISE		MANUAL_OK	3to5	-	451374	NA	0	85	10	90
P-0037461-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148410813	148526848	5-UTR of CUL1(+):16Kb before coding start	Exon 5 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.456:EZH2_chr7:g.148410813del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	116035	NA	0	9	10	9
P-0037461-T01-IM6	SOMATIC	APOOL	ATRX	X	X	76953261	84293671	Intron of ATRX(-):138bp before exon 4	Intron of APOOL(+):8Kb before exon 2	GRCh37	INVERSION	APOOL (NM_198450) - ATRX (NM_000489) rearrangement: c.16-7781:APOOL_c.190-138:ATRXinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {APOOL:ATRX}	7340410	NA	0	20	10	20
P-0037574-T01-IM6	SOMATIC	FGFR2	CTNNA3	10	10	68009575	123240911	Intron of CTNNA3(-):31Kb after exon 13	Intron of FGFR2(-):1Kb before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) - CTNNA3 (NM_013266) fusion: c.2302-1376:FGFR2_c.1884+30653:CTNNA3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:CTNNA3}	55231336	NA	0	69	10	104
P-0037664-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42857943	42870416	Intron of TMPRSS2(-):2Kb after exon 5	Intron of TMPRSS2(-):300bp before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-300_c.556+2378inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12473	NA	0	74	10	80
P-0038308-T03-IM6	SOMATIC	C11orf95	RELA	11	11	63532131	65430055	Intron of C11orf95(-):61bp before exon 4	Intron of RELA(-):241bp after exon 1	GRCh37	DUPLICATION	C11orf95 (NM_001144936) - RELA (NM_021975) fusion: c.1025-61:C11orf95_c.7+242:RELAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {C11orf95:RELA}	1897924	NA	0	6	10	6
P-0039149-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77066903	77093836	Intron of PAK1(-):16bp before exon 7	Intron of PAK1(-):3Kb before exon 3	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.191-2797_c.598-16del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	26933	NA	0	9	10	14
P-0039149-T01-IM6	SOMATIC	POLE	POLE	12	1	133248890	145089130	Exon 16 of POLE(-)	Intron of NBPF20(+):224Kb before exon 54	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(1;12)(q21.1;q24.33)(chr1:g.145089130::chr12:g.133248890)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	68	10	71
P-0039149-T01-IM6	SOMATIC	SPEN	SPEN	17	1	74507875	16202815	IGR: 16Kb before CYGB(-)	Exon 3 of SPEN(+)	GRCh37	TRANSLOCATION	SPEN (NM_015001) rearrangement: t(1;17)(p36.13;q25.1)(chr1:g.16202815::chr17:g.74507875)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	50	10	49
P-0039725-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	37538799	38187313	IGR: 15Kb before ZNF703(+)	Exon 6 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.1164:WHSC1L1_chr8:g.37538799inv	PRECISE		MANUAL_OK	5to5	-	648514	NA	0	30	10	33
P-0039734-T01-IM6	SOMATIC	NF1	NF1	17	17	29428704	29527990	Intron of NF1(+):6Kb after exon 1	Intron of NF1(+):64bp before exon 10	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.60+6317_c.1063-65del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : in frame	99286	NA	0	30	10	38
P-0040109-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201980433	202018196	Intron of ELF3(+):6bp after exon 2	IGR: 39Kb before ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.163+6:ELF3_chr1:g.202018196del	PRECISE		MANUAL_OK	3to5	-	37763	NA	0	9	10	9
P-0040148-T01-IM6	SOMATIC	INPPL1	INPPL1	11	5	71943629	144556499	Intron of INPPL1(+):40bp before exon 15	IGR: 579Kb before PRELID2(-)	GRCh37	TRANSLOCATION	INPPL1 (NM_001567) rearrangement: t(5;11)(q32;q13.4)(chr5:g.144556499::chr11:g.71943629)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	15	10	15
P-0040180-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39818937	42873885	Intron of ERG(-):1Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3769:TMPRSS2_c.19-1393:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3054948	NA	0	3	10	4
P-0040259-T01-IM6	SOMATIC	DIS3	DIS3	13	13	73347814	75899289	Intron of DIS3(-):7bp after exon 8	Intron of TBC1D4(-):752bp before exon 11	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement: c.1239+8:DIS3_chr13:g.75899289inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2551475	NA	0	8	10	8
P-0040328-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32879719	32907145	Intron of ZAR1L(-):2Kb before exon 4	Exon 10 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.1530:BRCA2_chr13:g.32879719del	PRECISE		MANUAL_OK	3to5	-	27426	NA	0	34	10	37
P-0040547-T01-IM6	SOMATIC	TP53	TP53	17	17	7579433	7581355	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.254:TP53_chr17:g.7581355del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1922	NA	0	2	5	3
P-0040547-T01-IM6	SOMATIC	IQSEC1	TP63	3	3	12957774	189612267	Intron of IQSEC1(-):541bp before exon 7	Exon 14 of TP63(+)	GRCh37	INVERSION	IQSEC1 (NM_001134382) - TP63 (NM_003722) rearrangement: c.2021-541:IQSEC1_c.2019:TP63inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IQSEC1:TP63}	176654493	NA	0	6	10	6
P-0040561-T02-IM6	SOMATIC	SETD2	PHF7	3	3	47165816	52456223	Exon 3 of SETD2(-)	Intron of PHF7(+):14bp before exon 9	GRCh37	INVERSION	SETD2 (NM_014159) - PHF7 (NM_016483) rearrangement: c.310:SETD2_c.681-15:PHF7inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SETD2:PHF7}	5290407	NA	0	51	10	61
P-0040638-T01-IM6	SOMATIC	FGF19	CELF4	18	11	34838353	69514323	Intron of CELF4(-):4Kb before exon 11	Exon 3 of FGF19(-)	GRCh37	TRANSLOCATION	FGF19 (NM_005117) - CELF4 (NM_020180) rearrangement: t(11;18)(q13.3;q12.2)(chr11:g.69514323::chr18:g.34838353)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FGF19:CELF4}	0	NA	0	18	10	19
P-0040757-T01-IM6	SOMATIC	MGA	MGA	15	15	42050112	43267081	Intron of MGA(+):75bp after exon 19	Intron of UBR1(-):2Kb after exon 39	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.7191+75:MGA_chr15:g.43267081del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	1216969	NA	0	12	0	13
P-0040788-T01-IM6	SOMATIC	VPS9D1	FANCA	16	16	89774405	89836792	Intron of VPS9D1(-):43bp before exon 15	Intron of FANCA(-):125bp before exon 25	GRCh37	DUPLICATION	VPS9D1 (NM_004913) - FANCA (NM_000135) rearrangement: c.1803-43:VPS9D1_c.2223-125:FANCAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {VPS9D1:FANCA}	62387	NA	0	14	10	14
P-0040815-T01-IM6	SOMATIC	CDK4	DCC	18	12	50434781	58145295	Intron of DCC(+):2Kb after exon 3	Exon 2 of CDK4(-)	GRCh37	TRANSLOCATION	CDK4 (NM_000075) - DCC (NM_005215) rearrangement: t(12;18)(q14.1;q21.2)(chr12:g.58145295::chr18:g.50434781)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CDK4:DCC}	0	NA	0	18	10	16
P-0040985-T01-IM6	SOMATIC	NOTCH2	NOTCH2	6	1	64352374	120497534	5-UTR of PHF3(+):38Kb before coding start	Intron of NOTCH2(-):128bp after exon 13	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q12)(chr1:g.120497534::chr6:g.64352374)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {NOTCH2:PHF3}	0	NA	0	11	10	12
P-0041051-T02-IM7	SOMATIC	CRKL	LZTR1	22	22	21284047	21350041	Intron of CRKL(+):4Kb before exon 2	Exon 17 of LZTR1(+)	GRCh37	DELETION	CRKL (NM_005207) - LZTR1 (NM_006767) rearrangement: c.312-4020:CRKL_c.1949:LZTR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CRKL:LZTR1}	65994	NA	0	18	10	18
P-0041149-T01-IM6	SOMATIC	EGFR	RAD51	15	7	40996189	55268799	Intron of RAD51(+):2Kb before exon 4	Intron of EGFR(+):81bp before exon 25	GRCh37	TRANSLOCATION	EGFR (NM_005228) - RAD51 (NM_002875) fusion: t(7;15)(p11.2;q15.1)(chr7:g.55268799::chr15:g.40996189)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EGFR:RAD51}	0	NA	0	16	10	16
P-0041211-T01-IM6	SOMATIC	TSC1	TSC1	14	9	59220977	135787874	IGR: 74Kb before LINC01500(+)	Intron of TSC1(-):30bp before exon 9	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(9;14)(q34.13;q23.1)(chr9:g.135787874::chr14:g.59220977)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	9	0	9
P-0041308-T02-IM6	SOMATIC	RRBP1	BRAF	20	7	17634546	140485917	Intron of RRBP1(-):5Kb after exon 3	Intron of BRAF(-):1Kb after exon 9	GRCh37	TRANSLOCATION	RRBP1 (NM_004587) - BRAF (NM_004333) fusion: t(7;20)(q34;p12.1)(chr7:g.140485917::chr20:g.17634546)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RRBP1:BRAF}	0	NA	0	49	10	49
P-0041340-T01-IM6	SOMATIC	MTOR	SRGAP1	12	1	64490142	11187637	Intron of SRGAP1(+):878bp before exon 15	Intron of MTOR(-):43bp after exon 44	GRCh37	TRANSLOCATION	MTOR (NM_004958) - SRGAP1 (NM_020762) rearrangement: t(1;12)(p36.22;q14.2)(chr1:g.11187637::chr12:g.64490142)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MTOR:SRGAP1}	0	NA	0	29	10	34
P-0041340-T01-IM6	SOMATIC	CALCRL	MTOR	2	1	188226364	11188552	Intron of CALCRL(-):886bp before exon 9	Exon 42 of MTOR(-)	GRCh37	TRANSLOCATION	CALCRL (NM_005795) - MTOR (NM_004958) rearrangement: t(1;2)(p36.22;q32.1)(chr1:g.11188552::chr2:g.188226364)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CALCRL:MTOR}	0	NA	0	24	10	24
P-0041372-T01-IM6	SOMATIC	HIVEP3	BRD4	19	1	15378399	41995508	Intron of BRD4(-):37bp before exon 4	Intron of HIVEP3(-):5Kb before exon 6	GRCh37	TRANSLOCATION	HIVEP3 (NM_001127714) - BRD4 (NM_058243) rearrangement: t(1;19)(p34.2;p13.12)(chr1:g.41995508::chr19:g.15378399)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {HIVEP3:BRD4}	0	NA	0	21	0	21
P-0041386-T01-IM6	SOMATIC	TAP2	TAP2	6	6	27423075	32796607	Intron of ZNF184(-):2Kb after exon 5	Intron of TAP2(-):569bp after exon 11	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: c.1932+570:TAP2_chr6:g.27423075inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	5373532	NA	0	6	0	6
P-0041461-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39854544	42868395	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1651:TMPRSS2_c.18+15743:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3013851	NA	0	34	10	35
P-0041464-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151860286	151867977	Exon 43 of KMT2C(-)	Intron of KMT2C(-):371bp after exon 40	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.9453+372_c.10376del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7691	NA	0	18	10	19
P-0041472-T01-IM6	SOMATIC	URI1	KMT2B	19	19	30447985	36212749	Intron of URI1(+):14Kb before exon 2	Intron of KMT2B(+):43bp after exon 3	GRCh37	DELETION	URI1 (NM_003796) - KMT2B (NM_014727) rearrangement: c.118-14115:URI1_c.2457+43:KMT2Bdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {URI1:KMT2B}	5764764	NA	0	99	10	109
P-0041555-T02-IM6	SOMATIC	COLCA2	CREBBP	16	11	3827613	111170924	Exon 11 of CREBBP(-)	Intron of COLCA2(+):327bp before exon 2	GRCh37	TRANSLOCATION	COLCA2 (NM_001271458) - CREBBP (NM_004380) rearrangement: t(11;16)(q23.1;p13.3)(chr11:g.111170924::chr16:g.3827613)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {COLCA2:CREBBP}	0	NA	0	45	10	44
P-0041602-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39940597	42875730	Intron of ERG(-):7Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4147:TMPRSS2_c.39+6989:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2935133	NA	0	87	10	88
P-0041616-T01-IM6	SOMATIC	ERI3	PARP1	1	1	44703420	226549185	Intron of ERI3(-):10Kb after exon 7	Exon 23 of PARP1(-)	GRCh37	DUPLICATION	ERI3 (NM_024066) - PARP1 (NM_001618) rearrangement: c.931+10191:ERI3_c.3021:PARP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERI3:PARP1}	181845765	NA	0	20	10	21
P-0041643-T01-IM6	SOMATIC	NF1	NF1	17	17	29476465	29486192	Intron of NF1(+):7Kb before exon 2	Intron of NF1(+):81bp after exon 3	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.61-6536_c.288+81dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	9727	NA	0	5	0	5
P-0041698-T01-IM6	SOMATIC	RAB11FIP4	NF1	17	17	29677281	29842022	Exon 50 of NF1(+)	Intron of RAB11FIP4(+):3Kb before exon 4	GRCh37	DUPLICATION	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) rearrangement: c.337-2647:RAB11FIP4_c.7402:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAB11FIP4:NF1}	164741	NA	0	7	10	7
P-0041702-T01-IM6	SOMATIC	RGS11	AXIN1	16	16	323738	341292	Intron of RGS11(-):21bp after exon 7	Exon 9 of AXIN1(-)	GRCh37	DUPLICATION	RGS11 (NM_183337) - AXIN1 (NM_003502) rearrangement: c.506+22:RGS11_c.2192:AXIN1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RGS11:AXIN1}	17554	NA	0	5	0	5
P-0041879-T01-IM6	SOMATIC	CCND1	CCND1	11	9	69465665	21814425	Intron of CCND1(+):220bp before exon 5	Intron of MTAP(+):1Kb before exon 2	GRCh37	TRANSLOCATION	CCND1 (NM_053056) rearrangement: t(9;11)(p21.3;q13.3)(chr9:g.21814425::chr11:g.69465665)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	20
P-0041879-T01-IM6	SOMATIC	ALK	ALK	2	2	29425097	29451671	Intron of ALK(-):5Kb before exon 27	Intron of ALK(-):78bp after exon 16	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.2815+79_c.3939-4555del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 10 exons : out of frame	26574	NA	0	14	0	14
P-0041882-T01-IM6	SOMATIC	SPPL2B	DOT1L	19	19	2227932	2346308	Intron of DOT1L(+):806bp after exon 27	Intron of SPPL2B(+):980bp after exon 13	GRCh37	DUPLICATION	SPPL2B (NM_152988) - DOT1L (NM_032482) rearrangement: c.1353+980:SPPL2B_c.4606+806:DOT1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SPPL2B:DOT1L}	118376	NA	0	6	10	6
P-0041957-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39964163	42878060	3-UTR of ERG(-):70Kb after coding stop	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+1817:TMPRSS2_chr21:g.39964163del	PRECISE		MANUAL_OK	3to5	-	2913897	NA	0	32	10	32
P-0042018-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48575887	48589541	Intron of SMAD4(+):193bp after exon 4	Intron of SMAD4(+):2Kb before exon 9	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.454+193_c.956-2252del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	13654	NA	0	9	8	8
P-0042082-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69030881	69031685	Intron of PREX2(+):2bp after exon 27	Exon 28 of PREX2(+)	GRCh37	DELETION	PREX2 (NM_024870) rearrangement: c.3421+2_c.3440del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	804	NA	0	2	5	2
P-0042148-T01-IM6	SOMATIC	MED16	TCF3	19	19	885139	1619499	Intron of MED16(-):131bp before exon 6	Intron of TCF3(-):26bp before exon 14	GRCh37	DUPLICATION	MED16 (NM_005481) - TCF3 (NM_001136139) rearrangement: c.880-131:MED16_c.1168-26:TCF3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MED16:TCF3}	734360	NA	0	99	10	105
P-0042148-T01-IM6	SOMATIC	XPO7	RAD54L	8	1	21784560	46726127	Intron of XPO7(+):7Kb after exon 1	Intron of RAD54L(+):86bp before exon 7	GRCh37	TRANSLOCATION	XPO7 (NM_015024) - RAD54L (NM_001142548) rearrangement: t(1;8)(p34.1;p21.3)(chr1:g.46726127::chr8:g.21784560)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {XPO7:RAD54L}	0	NA	0	11	0	11
P-0042270-T01-IM6	SOMATIC	ANKRD36	NTRK1	2	1	97835462	156844593	Intron of ANKRD36(+):2Kb after exon 22	Intron of NTRK1(+):104bp before exon 11	GRCh37	TRANSLOCATION	ANKRD36 (NM_001164315) - NTRK1 (NM_002529) fusion: t(1;2)(q23.1;q11.2)(chr1:g.156844593::chr2:g.97835462)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ANKRD36:NTRK1}	0	NA	0	5	10	6
P-0042342-T01-IM6	SOMATIC	XPO1	USP34	2	2	61551572	61708244	Intron of USP34(-):937bp after exon 21	Intron of XPO1(-):75bp after exon 24	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.3069+76:XPO1_c.3013+938:USP34del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {XPO1:USP34}	156672	NA	0	5	10	5
P-0042513-T01-IM6	SOMATIC	RB1	RB1	13	13	48916743	49033778	Exon 3 of RB1(+)	Intron of RB1(+):45bp before exon 20	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.273_c.1961-46del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	117035	NA	0	15	10	16
P-0042513-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2114315	2127967	Exon 15 of TSC2(+)	Intron of TSC2(+):240bp after exon 26	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.1486_c.2966+240dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	13652	NA	0	128	10	133
P-0042610-T01-IM6	SOMATIC	CBFB	CDH3	16	16	67063310	68679384	Exon 1 of CBFB(+)	Intron of CDH3(+):57bp after exon 1	GRCh37	INVERSION	CBFB (NM_022845) - CDH3 (NM_001793) rearrangement: c.4:CBFB_c.45+57:CDH3inv	PRECISE		MANUAL_OK	5to5	-	1616074	NA	0	2	10	4
P-0042696-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68846712	68857573	Intron of CDH1(+):503bp before exon 9	Intron of CDH1(+):44bp after exon 13	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement: c.1138-504_c.2164+44dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	10861	NA	0	8	10	8
P-0042807-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55152366	55223277	Intron of EGFR(+):58Kb before exon 2	Intron of EGFR(+):245bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-57613_c.890-246del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	70911	NA	0	171	0	700
P-0042814-T01-IM6	SOMATIC	NF2	NF2	22	22	30003449	30054459	Intron of NF2(+):3Kb after exon 1	Intron of NF2(+):206bp after exon 7	GRCh37	DUPLICATION	NF2 (NM_000268) rearrangement: c.114+3348_c.675+206dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	51010	NA	0	21	10	22
P-0042883-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68535342	68878190	Intron of RAD51B(+):181Kb after exon 7	Exon 9 of RAD51B(+)	GRCh37	DUPLICATION	RAD51B (NM_133509) rearrangement: c.756+181421_c.903dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	342848	NA	0	25	10	25
P-0042895-T01-IM6	SOMATIC	SOS1	SOS1	2	1	39234250	231240657	Exon 16 of SOS1(-)	IGR: 58Kb before TRIM67(+)	GRCh37	TRANSLOCATION	SOS1 (NM_005633) rearrangement: t(1;2)(q42.2;p22.1)(chr1:g.231240657::chr2:g.39234250)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	24	10	24
P-0042971-T01-IM6	SOMATIC	PTEN	PTEN	10	10	9509369	89624240	IGR: 192Kb before LINC00709(+)	Exon 1 of PTEN(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.14:PTEN_chr10:g.9509369inv	PRECISE		MANUAL_OK	5to5	-	80114871	NA	0	5	10	5
P-0042971-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40014900	42874211	3-UTR of ERG(-):19Kb after coding stop	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4095:TMPRSS2_chr21:g.40014900del	PRECISE		MANUAL_OK	3to5	-	2859311	NA	0	86	10	91
P-0042974-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	1	15296585	81334562	Intron of NOTCH3(-):95bp before exon 13	IGR: 228Kb before LOC101927412(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(1;19)(p31.1;p13.12)(chr1:g.81334562::chr19:g.15296585)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	17	10	17
P-0042986-T01-IM6	SOMATIC	DOT1L	DOT1L	19	8	2229723	3679668	Intron of DOT1L(+):60bp before exon 28	Intron of CSMD1(-):68Kb before exon 6	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(8;19)(p23.2;p13.3)(chr8:g.3679668::chr19:g.2229723)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	105	10	113
P-0042986-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52253450	52438732	Promoter of TLR9(-):2Kb from tx start	Intron of BAP1(-):130bp before exon 12	GRCh37	DUPLICATION	BAP1 (NM_004656) rearrangement: c.1117-130:BAP1_chr3:g.52253450dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TLR9:BAP1}	185282	NA	0	23	10	23
P-0042986-T01-IM6	SOMATIC	INPP4B	INPP4B	4	4	143030379	143033795	Intron of INPP4B(-):1Kb before exon 23	Exon 22 of INPP4B(-)	GRCh37	DELETION	INPP4B (NM_001101669) rearrangement: c.2176_c.2277-1036del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3416	NA	0	24	10	26
P-0043158-T01-IM6	SOMATIC	TP53	TP53	17	17	1926474	7576832	Intron of RTN4RL1(-):2Kb after exon 1	Intron of TP53(-):20bp after exon 9	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+21:TP53_chr17:g.1926474inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5650358	NA	0	59	10	70
P-0043159-T01-IM6	SOMATIC	VTCN1	VTCN1	1	1	117693177	117695927	Intron of VTCN1(-):3Kb after exon 4	Exon 4 of VTCN1(-)	GRCh37	DELETION	VTCN1 (NM_024626) rearrangement: c.510_c.724+2536del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2750	NA	0	10	8	10
P-0043184-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139362217	139397404	Intron of SEC16A(-):649bp after exon 5	Intron of NOTCH1(-):229bp after exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3802+650:SEC16A_c.5167+230:NOTCH1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SEC16A:NOTCH1}	35187	NA	0	16	0	17
P-0043226-T01-IM6	SOMATIC	GATA3	GATA3	10	10	8115312	8115916	Intron of GATA3(+):389bp before exon 6	Exon 6 of GATA3(+)	GRCh37	DUPLICATION	GATA3 (NM_002051) rearrangement: c.1048-390_c.1262dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	604	NA	0	65	10	70
P-0043364-T04-IM7	SOMATIC	DICER1	DICER1	14	14	95582031	95594496	Exon 11 of DICER1(-)	Intron of DICER1(-):1Kb after exon 6	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.734+1313_c.1880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12465	NA	0	16	10	19
P-0043364-T04-IM7	SOMATIC	TRAF7	TRAF7	17	16	74479057	2222466	5-UTR of RHBDF2(-):11Kb before coding start	Exon 9 of TRAF7(+)	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(16;17)(p13.3;q25.1)(chr16:g.2222466::chr17:g.74479057)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRAF7:RHBDF2}	0	NA	0	134	10	137
P-0043364-T04-IM7	SOMATIC	STAT3	STAT3	17	17	40489779	55799452	Intron of STAT3(-):1bp after exon 7	IGR: 22Kb before CCDC182(-)	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.645+2:STAT3_chr17:g.55799452inv	PRECISE		MANUAL_OK	5to5	-	15309673	NA	0	30	10	43
P-0043489-T01-IM6	SOMATIC	BRIP1	BRIP1	20	17	55040117	59886002	IGR: 4Kb before RTFDC1(+)	Exon 7 of BRIP1(-)	GRCh37	TRANSLOCATION	BRIP1 (NM_032043) rearrangement: t(17;20)(q23.2;q13.31)(chr17:g.59886002::chr20:g.55040117)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	88	10	90
P-0043489-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870177	42868685	Intron of ERG(-):109bp after exon 1	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.126+1361:TMPRSS2_c.18+110:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2998508	NA	0	66	10	70
P-0043532-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38170867	38176320	Intron of WHSC1L1(-):1Kb after exon 12	Intron of WHSC1L1(-):92bp after exon 9	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.1855+93_c.2242+1298del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	5453	NA	0	16	10	19
P-0043579-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57488047	57493454	Intron of NAB2(+):347bp before exon 7	Intron of STAT6(-):95bp after exon 15	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-348:NAB2_c.1744+96:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5407	NA	0	31	10	30
P-0043587-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3785702	3786833	Intron of CREBBP(-):334bp after exon 28	Intron of CREBBP(-):17bp before exon 27	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.4395-17_c.4728+335dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1131	NA	0	35	10	40
P-0043587-T01-IM6	SOMATIC	NF1	NF1	17	17	29453735	29486207	Intron of NF1(+):29Kb before exon 2	Intron of NF1(+):96bp after exon 3	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.61-29266_c.288+96dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	32472	NA	0	8	10	8
P-0043591-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	119442122	157495228	5-UTR of FAM184A(-):161Kb before coding start	Exon 11 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.3112:ARID1B_chr6:g.119442122del	PRECISE		MANUAL_OK	3to5	-	38053106	NA	0	26	10	28
P-0043789-T01-IM6	SOMATIC	NF1	NF1	17	17	29474694	29553758	Intron of NF1(+):8Kb before exon 2	Intron of NF1(+):56bp after exon 18	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.61-8307_c.2251+56dup	PRECISE		MANUAL_OK	5to3	Duplication of 17 exons : out of frame	79064	NA	0	48	10	72
P-0043789-T01-IM6	SOMATIC	EP300	EP300	22	22	41520394	41573513	Intron of EP300(+):1Kb before exon 3	Exon 31 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.730-1474_c.5798dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	53119	NA	0	3	7	3
P-0043929-T01-IM6	SOMATIC	ERF	DNAJC4	19	11	42752786	64001339	Exon 4 of ERF(-)	Intron of DNAJC4(+):26bp before exon 6	GRCh37	TRANSLOCATION	ERF (NM_006494) - DNAJC4 (NM_005528) rearrangement: t(11;19)(q13.1;q13.2)(chr11:g.64001339::chr19:g.42752786)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ERF:DNAJC4}	0	NA	0	54	10	65
P-0043935-T01-IM6	SOMATIC	PIK3R1	PIK3R1	5	5	67582402	67589616	Intron of PIK3R1(+):6Kb after exon 7	Exon 11 of PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.916+5568_c.1379del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7214	NA	0	27	10	27
P-0044150-T01-IM6	SOMATIC	CACNA1A	CARM1	19	19	10982427	13328179	Exon 1 of CARM1(+)	Intron of CACNA1A(-):3Kb before exon 39	GRCh37	INVERSION	CACNA1A (NM_001127222) - CARM1 (NM_199141) rearrangement: c.5732-2757:CACNA1A_c.49:CARM1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CACNA1A:CARM1}	2345752	NA	0	22	10	30
P-0044204-T01-IM6	SOMATIC	WHSC1	WHSC1	4	1	1978453	153840676	Intron of WHSC1(+):47bp after exon 21	5-UTR of GATAD2B(-):58Kb before coding start	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) rearrangement: t(1;4)(q21.3;p16.3)(chr1:g.153840676::chr4:g.1978453)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {WHSC1:GATAD2B}	0	NA	0	6	8	6
P-0044221-T01-IM6	SOMATIC	PDLIM2	SOX9	17	8	70119636	22440631	Intron of SOX9(+):47bp before exon 3	Intron of PDLIM2(+):2Kb after exon 3	GRCh37	TRANSLOCATION	PDLIM2 (NM_021630) - SOX9 (NM_000346) rearrangement: t(8;17)(p21.3;q24.3)(chr8:g.22440631::chr17:g.70119636)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PDLIM2:SOX9}	0	NA	0	99	10	99
P-0044288-T01-IM6	SOMATIC	TMPRSS2	MPP5	21	14	42869498	67791033	Intron of TMPRSS2(-):547bp after exon 2	Intron of MPP5(+):504bp after exon 14	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - MPP5 (NM_022474) rearrangement: t(14;21)(q23.3;q22.3)(chr14:g.67791033::chr21:g.42869498)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TMPRSS2:MPP5}	0	NA	0	201	10	251
P-0044288-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866826	42875413	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4464:TMPRSS2_c.18+3461:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008587	NA	0	132	10	141
P-0044305-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2226588	2227991	Exon 27 of DOT1L(+)	Intron of DOT1L(+):865bp after exon 27	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.4068_c.4606+865del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1403	NA	0	37	10	40
P-0044373-T01-IM6	SOMATIC	TCF3	TCF3	19	19	1618414	1619123	Intron of TCF3(-):695bp after exon 15	Exon 15 of TCF3(-)	GRCh37	INVERSION	TCF3 (NM_001136139) rearrangement: c.1437_c.1450+696inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	709	NA	0	5	0	5
P-0044418-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	4645778	11096798	5-UTR of TNFAIP8L1(+):6Kb before coding start	Intron of SMARCA4(+):66bp before exon 4	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.356-67:SMARCA4_chr19:g.4645778del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TNFAIP8L1:SMARCA4}	6451020	NA	0	57	10	61
P-0044465-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646909	149783638	Intron of ROS1(-):477bp after exon 33	Intron of CD74(-):604bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783638::chr6:g.117646909)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	81	10	81
P-0044507-T01-IM6	SOMATIC	MTR	BAP1	3	1	52439840	237031148	Exon 10 of BAP1(-)	Intron of MTR(+):4Kb after exon 22	GRCh37	TRANSLOCATION	MTR (NM_000254) - BAP1 (NM_004656) rearrangement: t(1;3)(q43;p21.1)(chr1:g.237031148::chr3:g.52439840)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MTR:BAP1}	0	NA	0	87	10	86
P-0044659-T01-IM6	SOMATIC	FAM172A	NPM1	5	5	93018937	170827157	Intron of FAM172A(-):62Kb before exon 9	Exon 7 of NPM1(+)	GRCh37	INVERSION	FAM172A (NM_032042) - NPM1 (NM_002520) rearrangement: c.1109-62102:FAM172A_c.525:NPM1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAM172A:NPM1}	77808220	NA	0	2	9	2
P-0044764-T01-IM6	SOMATIC	CENPE	IGF1R	15	4	99467155	104084685	Exon 12 of IGF1R(+)	Exon 17 of CENPE(-)	GRCh37	TRANSLOCATION	CENPE (NM_001813) - IGF1R (NM_000875) rearrangement: t(4;15)(q24;q26.3)(chr4:g.104084685::chr15:g.99467155)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CENPE:IGF1R}	0	NA	0	21	10	21
P-0044764-T01-IM6	SOMATIC	PALB2	PALB2	16	6	23646987	88953847	Exon 4 of PALB2(-)	IGR: 104Kb before CNR1(-)	GRCh37	TRANSLOCATION	PALB2 (NM_024675) rearrangement: t(6;16)(q15;p12.2)(chr6:g.88953847::chr16:g.23646987)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	80	10	90
P-0044764-T01-IM6	SOMATIC	HIST1H3C	ARHGEF9	X	6	62989539	26045776	Intron of ARHGEF9(-):15Kb after exon 1	Exon 1 of HIST1H3C(+)	GRCh37	TRANSLOCATION	HIST1H3C (NM_003531) - ARHGEF9 (NM_001173479) rearrangement: t(6;X)(p22.2;q11.1)(chr6:g.26045776::chrX:g.62989539)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {HIST1H3C:ARHGEF9}	0	NA	0	20	10	20
P-0044824-T01-IM6	SOMATIC	KDR	KDR	4	4	55980834	78666042	Intron of KDR(-):206bp after exon 5	Intron of CNOT6L(-):13bp before exon 7	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.658+207:KDR_chr4:g.78666042inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	22685208	NA	0	16	10	15
P-0044905-T01-IM6	SOMATIC	TSC2	HAGH	16	16	1876548	2126293	Intron of HAGH(-):164bp after exon 1	Intron of TSC2(+):122bp after exon 24	GRCh37	INVERSION	TSC2 (NM_000548) - HAGH (NM_005326) rearrangement: c.2742+122:TSC2_c.76+165:HAGHinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {TSC2:HAGH}	249745	NA	0	3	10	3
P-0044905-T01-IM6	SOMATIC	RAB11FIP4	NF1	17	17	29585474	29729515	Exon 32 of NF1(+)	Intron of RAB11FIP4(+):10Kb after exon 1	GRCh37	DUPLICATION	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) rearrangement: c.159+10486:RAB11FIP4_c.4286:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAB11FIP4:NF1}	144041	NA	0	6	10	15
P-0044999-T01-IM6	SOMATIC	IDUA	LATS1	6	4	149983308	981090	Exon 8 of LATS1(-)	Intron of IDUA(+):60bp after exon 1	GRCh37	TRANSLOCATION	IDUA (NM_000203) - LATS1 (NM_004690) rearrangement: t(4;6)(p16.3;q25.1)(chr4:g.981090::chr6:g.149983308)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {IDUA:LATS1}	0	NA	0	22	10	22
P-0045013-T01-IM6	SOMATIC	PIK3C3	PIK3C3	18	2	39570511	156527970	Exon 6 of PIK3C3(+)	IGR: 349Kb before LOC101929378(-)	GRCh37	TRANSLOCATION	PIK3C3 (NM_002647) rearrangement: t(2;18)(q24.1;q12.3)(chr2:g.156527970::chr18:g.39570511)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0045222-T01-IM6	SOMATIC	EML4	ALK	2	2	29447488	42553264	Intron of ALK(-):838bp after exon 19	Intron of EML4(+):29bp before exon 20	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2243-30:EML4_c.3172+839:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13105776	NA	0	24	10	24
P-0047119-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37554870	37619006	Intron of FBXL20(-):3Kb after exon 1	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.682:CDK12_chr17:g.37554870del	PRECISE		MANUAL_OK	3to5	-	64136	NA	0	24	10	134
P-0048791-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39840878	42871318	Intron of ERG(-):23Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-23334:ERG_c.56-1202:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3030440	NA	0	7	10	11
P-0052265-T01-IM6	SOMATIC	FAT1	FAT1	4	4	187627516	187630400	Intron of FAT1(-):200bp after exon 2	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.582_c.3265+201del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2884	NA	0	7	8	7
P-0053193-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29684193	29695205	Intron of EWSR1(+):401bp before exon 9	Intron of EWSR1(+):18bp before exon 16	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.812-402_c.1596-19del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	11012	NA	0	25	10	27
P-0053193-T01-IM6	SOMATIC	CTNNB1	CTNNB1	7	3	108361344	41279349	IGR: 151Kb before DNAJB9(+)	Intron of CTNNB1(+):157bp before exon 14	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) rearrangement: t(3;7)(p22.1;q31.1)(chr3:g.41279349::chr7:g.108361344)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	11	10	11
P-0054325-T02-IM7	SOMATIC	ETV6	ETV6	12	12	12020037	12092716	Intron of ETV6(+):2Kb before exon 5	IGR: 131Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-2321:ETV6_chr12:g.12092716del	PRECISE		MANUAL_OK	3to5	-	72679	NA	0	47	10	49
P-0056417-T03-IM7	SOMATIC	ARID2	ARID2	12	12	46231650	53855191	Intron of ARID2(+):160bp after exon 10	Intron of PCBP2(+):264bp after exon 7	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.1330+160:ARID2_chr12:g.53855191inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	7623541	NA	0	6	8	6
P-0057132-T02-IM7	SOMATIC	FGFR2	FGFR2	10	10	123055030	123241120	IGR: 183Kb before FGFR2(-)	Intron of FGFR2(-):2Kb before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-1585:FGFR2_chr10:g.123055030del	PRECISE		MANUAL_OK	3to5	-	186090	NA	0	15	10	15
P-0059038-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55142117	55223516	Intron of EGFR(+):55Kb after exon 1	Intron of EGFR(+):6bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+55059_c.890-7del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	81399	NA	0	14	10	82
P-0059038-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55268466	55272813	Intron of EGFR(+):360bp after exon 24	Intron of EGFR(+):135bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+360_c.3272-136del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4347	NA	0	11	0	74
P-0060084-T02-IM7	SOMATIC	STAT3	STAT3	17	17	39131715	40478135	Promoter of KRT40(-):2Kb from tx start	Exon 15 of STAT3(-)	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.1364:STAT3_chr17:g.39131715del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAT3:KRT40}	1346420	NA	0	4	6	4
P-0060174-T02-IM7	SOMATIC	EZH2	EZH2	7	7	148407086	148544185	5-UTR of CUL1(+):20Kb before coding start	Intron of EZH2(-):88bp after exon 2	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.117+89:EZH2_chr7:g.148407086del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	137099	NA	0	3	7	4
P-0060215-T02-IM7	SOMATIC	FLT1	FLT1	13	13	28971072	98985718	Intron of FLT1(-):24bp after exon 12	Intron of FARP1(+):10Kb before exon 3	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.1660+25:FLT1_chr13:g.98985718del	PRECISE		MANUAL_OK	3to5	-	70014646	NA	0	15	10	15
P-0060415-T01-IM7	SOMATIC	PIK3CB	PIK3CB	3	3	138384069	138435644	Intron of PIK3CB(-):24bp before exon 18	Intron of PIK3CB(-):2Kb before exon 7	GRCh37	DELETION	PIK3CB (NM_006219) rearrangement: c.1051-2083_c.2505-24del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : out of frame	51575	NA	0	33	10	33
P-0060464-T02-IM7	SOMATIC	CSDE1	CSDE1	16	1	77576507	115280620	IGR: 180Kb before NUDT7(+)	Exon 5 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;16)(p13.2;q23.1)(chr1:g.115280620::chr16:g.77576507)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	18	10	20
P-0060480-T01-IM7	SOMATIC	SESN3	GRIA4	11	11	94910789	105690389	Intron of SESN3(-):93bp after exon 8	Intron of GRIA4(+):42Kb before exon 4	GRCh37	INVERSION	SESN3 (NM_144665) - GRIA4 (NM_000829) rearrangement: c.1247+94:SESN3_c.488-42361:GRIA4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SESN3:GRIA4}	10779600	NA	0	10	10	10
P-0060482-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11152174	11179101	Exon 31 of SMARCA4(+)	IGR: 21Kb before LDLR(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4362:SMARCA4_chr19:g.11179101del	PRECISE		MANUAL_OK	3to5	-	26927	NA	0	10	7	10
P-0060483-T01-IM7	SOMATIC	TP53	TP53	17	17	7529040	7572950	5-UTR of SHBG(+):5Kb before coding start	Exon 11 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1159:TP53_chr17:g.7529040del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	43910	NA	0	48	10	51
P-0060502-T01-IM7	SOMATIC	SLX4	TRAP1	16	16	3656685	3711704	Exon 3 of SLX4(-)	Intron of TRAP1(-):283bp after exon 15	GRCh37	DUPLICATION	SLX4 (NM_032444) - TRAP1 (NM_016292) rearrangement: c.550:SLX4_c.1940+284:TRAP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLX4:TRAP1}	55019	NA	0	2	6	2
P-0060504-T01-IM7	SOMATIC	USP8	USP8	15	15	50786319	101818180	Exon 16 of USP8(+)	Promoter of VIMP(-):6Kb from tx start	GRCh37	INVERSION	USP8 (NM_005154) rearrangement: c.2500:USP8_chr15:g.101818180inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {USP8:VIMP}	51031861	NA	0	31	10	31
P-0060504-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872608	42872552	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2436:TMPRSS2_chr21:g.39872608del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2999944	NA	0	48	10	49
P-0060505-T01-IM7	SOMATIC	TP53	TP53	17	3	7576580	163746408	Intron of TP53(-):272bp after exon 9	IGR: 685Kb before LINC01324(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(3;17)(q26.1;p13.1)(chr3:g.163746408::chr17:g.7576580)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	37
P-0060513-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30671409	102831978	Exon 10 of MDC1(-)	IGR: 985Kb before GRIK2(+)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.5551:MDC1_chr6:g.102831978inv	PRECISE		MANUAL_OK	3to3	-	72160569	NA	0	11	10	11
P-0060522-T01-IM7	SOMATIC	CD74	NRG1	8	5	32570123	149783541	Intron of NRG1(+):15Kb before exon 6	Intron of CD74(-):666bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - NRG1 (NM_013956) rearrangement: t(5;8)(q32;p12)(chr5:g.149783541::chr8:g.32570123)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD74:NRG1}	0	NA	0	66	10	75
P-0060531-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	246518185	246544150	Intron of SMYD3(-):147bp after exon 2	Intron of SMYD3(-):26Kb before exon 2	GRCh37	DUPLICATION	SMYD3 (NM_001167740) rearrangement: c.165-25754_c.228+148dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	25965	NA	0	5	9	5
P-0060531-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99443112	99456470	Intron of IGF1R(+):262bp after exon 5	Exon 8 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.1247+262_c.1787dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	13358	NA	0	14	10	14
P-0060531-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99456192	99457849	Intron of IGF1R(+):80bp before exon 8	Intron of IGF1R(+):1Kb after exon 8	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.1590-81_c.1828+1338dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1657	NA	0	4	10	5
P-0060531-T01-IM7	SOMATIC	NSD1	NSD1	5	5	176678718	176684402	Intron of NSD1(+):12bp before exon 12	Intron of NSD1(+):250bp after exon 13	GRCh37	DUPLICATION	NSD1 (NM_022455) rearrangement: c.4642-13_c.4966+250dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	5684	NA	0	12	10	14
P-0060533-T01-IM7	SOMATIC	EP300	EP300	22	22	41531793	41535237	Intron of EP300(+):23bp before exon 7	Intron of EP300(+):906bp before exon 9	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.1529-24_c.1761-907del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3444	NA	0	4	6	4
P-0060542-T01-IM7	SOMATIC	KIF5B	RET	10	10	32313034	43611582	Intron of KIF5B(-):1Kb before exon 16	Intron of RET(+):449bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1070:KIF5B_c.2137-450:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298548	NA	0	9	10	10
P-0060545-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56160786	56164548	Intron of MAP3K1(+):25bp after exon 4	Intron of MAP3K1(+):3Kb after exon 6	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.1035+25_c.1301+2744del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3762	NA	0	29	10	30
P-0060546-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89689727	89692948	Intron of PTEN(+):1Kb before exon 4	Exon 5 of PTEN(+)	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.210-1076_c.432dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3221	NA	0	19	10	43
P-0060551-T01-IM7	SOMATIC	SMARCB1	SMARCB1	22	1	24143638	14836184	Intron of SMARCB1(+):370bp after exon 4	IGR: 89Kb before KAZN(+)	GRCh37	TRANSLOCATION	SMARCB1 (NM_003073) rearrangement: t(1;22)(p36.21;q11.23)(chr1:g.14836184::chr22:g.24143638)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	10
P-0060561-T01-IM7	SOMATIC	BARD1	BARD1	2	2	215637709	215645984	Intron of BARD1(-):4Kb before exon 5	Exon 4 of BARD1(-)	GRCh37	DELETION	BARD1 (NM_000465) rearrangement: c.614_c.1315-3673del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8275	NA	0	9	8	9
P-0060626-T01-IM7	SOMATIC	NBN	NBN	8	8	87467991	90967700	Intron of WWP1(+):2Kb before exon 22	Exon 10 of NBN(-)	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.1208:NBN_chr8:g.87467991del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3499709	NA	0	32	10	32
P-0060627-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974606	21981189	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-9982_c.194-3399del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6583	NA	0	18	10	19
P-0060627-T01-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101904956	101906860	Exon 5 of TGFBR1(+)	Intron of TGFBR1(+):153bp before exon 6	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.944_c.974-154del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1904	NA	0	19	10	19
P-0000505-T02-IM6	SOMATIC	FOXA1	FOXA1	14	14	38061289	40011548	Exon 2 of FOXA1(-)	IGR: 146Kb before FBXO33(-)	GRCh37	DUPLICATION	FOXA1 (NM_004496) Rearrangement : c.700:FOXA1_chr14:g.40011548dup	IMPPRECISE		MANUAL_OK	5to3	-	1950259	NA	0	98	0	103
P-0006847-T02-IM6	SOMATIC	PGR	PGR	11	11	58736059	100999334	3-UTR of LOC283194(-):90Kb after coding stop	Exon 1 of PGR(-)	GRCh37	INVERSION	PGR (NM_000926) Rearrangement  : chr11:g.58736059_c.468:PGRinv	PRECISE		MANUAL_OK	5to5	-	42263275	NA	0	68	10	86
P-0008099-T01-IM5	SOMATIC	KDM5A	KDM5A	12	12	401993	404335	Exon 27 of KDM5A(-)	Intron of KDM5A(-): 404bp after exon 26	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement : c.4455+404_4798inv	PRECISE		MANUAL_OK	5to5	Antisense fusion	2342	NA	0	42	60	40
P-0008404-T02-IM5	SOMATIC	MSH2	MSH2	2	2	47683571	47693673	Intron of MSH2(+): 7Kb before exon 9	Intron of MSH2(+): 124bp before exon 10	GRCh37	DELETION	MSH2 (NM_00025) rearrangement: c.1387-6599_c.1511-124del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	10102	NA	0	13	21	11
P-0012008-T01-IM5	SOMATIC	SDC4	ROS1	20	6	43964016	117652119	Intron of SDC4(-): 406bp after exon 2	Intron of ROS1(-): 2Kb before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) reciprocal fusion (SDC4 exons 1-2 with ROS1 exons 32-43): t(6;20) (q22.1; q13.12) (chr6:g.117652119::chr20:g.43964016 )	PRECISE		MANUAL_OK	5to3	Protein fusion: in frame (SDC4-ROS1)	0	NA	0	16	6	12
P-0013580-T01-IM5	SOMATIC	EGFR	EGFR	7	7	55156820	55223380	Intron of EGFR(+): 53Kb before exon 2	Intron of EGFR(+): 143bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-53159_c.890-143del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons: in frame	66560	NA	0	102	226	929
P-0017558-T02-IM7	SOMATIC	ARHGEF11	NTRK1	1	1	156845502	157013603	Intron of NTRK1(+):44bp after exon 12	Intron of ARHGEF11(-):487bp after exon 1	GRCh37	INVERSION	ARHGEF11 (NM_198236) - NTRK1 (NM_002529) fusion: c.32+488:ARHGEF11_c.1501+44:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ARHGEF11:NTRK1}	168101	NA	0	7	0	7
P-0020245-T02-IM7	SOMATIC	APC	APC	5	5	112175312	112176877	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4021_c.5586del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1565	NA	0	150	10	159
P-0020450-T03-IM6	SOMATIC	ALK	ALK	2	2	29448185	123228344	Intron of ALK(-):141bp after exon 19	IGR: 715Kb before TSN(+)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3172+142:ALK_chr2:g.123228344del	PRECISE		MANUAL_OK	3to5	-	93780159	NA	0	22	10	22
P-0020450-T03-IM6	SOMATIC	TSPAN5	EIF4E	4	4	99467555	99809198	Intron of TSPAN5(-):39Kb before exon 2	Intron of EIF4E(-):95bp before exon 4	GRCh37	DUPLICATION	TSPAN5 (NM_005723) - EIF4E (NM_001130678) Rearrangement : c.82-38676:TSPAN5_c.282-95:EIF4Edup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TSPAN5:EIF4E}	341643	NA	0	8	10	8
P-0020798-T02-IM6	SOMATIC	PIK3CG	PIK3CG	15	7	20021877	106513169	IGR: 466Kb before CHEK2P2(+)	Exon 4 of PIK3CG(+)	GRCh37	TRANSLOCATION	PIK3CG (NM_002649) rearrangement: t(7;15)(q22.3;q11.1)(chr7:g.106513169::chr15:g.20021877)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	9
P-0020798-T02-IM6	SOMATIC	ROS1	ROS1	6	6	117625241	117642463	Intron of ROS1(-):3Kb before exon 42	Exon 35 of ROS1(-)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.6570-2941_c.5736del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17222	NA	0	12	10	13
P-0021532-T01-IM6	SOMATIC	ALK	1311del	2	2	29456486	29457873	Exon 14 of ALK(-)	Intron of ALK(-):1Kb before exon 14	GRCh37	DELETION	ALK (NM_004304) rearrangement c.2432_c.2356-1311del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1387	NA	0	31	10	31
P-0021729-T01-IM6	SOMATIC	PAX8	PAX8	5	2	138655995	113978757	Intron of MATR3(+):805bp after exon 8	Intron of PAX8(-):1Kb before exon 11	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2,5)(q14.1,q31.2)(chr2:g.113978757::chr5:g.138655995)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	52	10	53
P-0021729-T01-IM6	SOMATIC	MED12	MED12	X	11	70339451	64634642	Intron of MED12(+):84bp before exon 3	Intron of EHD1(-):7Kb before exon 3	GRCh37	TRANSLOCATION	MED12 (NM_005120) rearrangement: (X,11)(q13.1, q13.1)(chrX:g.70339451::chr11:g.64634642)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	19	10	19
P-0022097-T02-IM6	SOMATIC	CIC	CIC	19	19	42738021	42794526	Intron of GSK3A(-):483bp after exon 6	Exon 10 of CIC(+)	GRCh37	DELETION	CIC (NM_015125) Rearrangement: c.1606:CIC_chr19:g.42738021del	IMPPRECISE		MANUAL_OK	3to5	-	56505	NA	0	5	0	5
P-0025458-T02-IM6	SOMATIC	MYOD1	DNAJC24	11	11	17741497	31432191	Exon 1 of MYOD1(+)	Intron of DNAJC24(+):4Kb before exon 3	GRCh37	DELETION	MYOD1 (NM_002478) - DNAJC24 (NM_181706) Rearrangement: c.168_MYOD1:c.112-4167_DNAJC24del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MYOD1:DNAJC24}	13690694	NA	0	15	10	16
P-0026158-T01-IM6	SOMATIC	MAD1L1	BRAF	7	7	2030039	140491749	Intron of MAD1L1(-):10Kb before exon 15	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	MAD1L1 (NM_001013837) - BRAF (NM_004333) Rearrangement : c.1417-9863_c.1140+2359dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MAD1L1:BRAF}	138461710	NA	0	107	10	122
P-0026455-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646566	149783651	Intron of ROS1(-):820bp after exon 33	Intron of CD74(-):591bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused to ROS1 exons 34-43): t(5;6)(q32;q22.1)(chr5:g.149783651::chr6:g.117646566)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	50	10	52
P-0026772-T02-IM6	SOMATIC	TBX3	TBX3	20	12	34639453	115111961	Promoter of LINC00657(-):6Kb from tx start	Intron of TBX3(-):8bp after exon 7	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(12;20)(q24.21;q11.23)(chr12:g.115111961::chr20:g.34639453)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TBX3:LINC00657}	0	NA	0	113	10	116
P-0028546-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	115569925	120508174	Promoter of TSHB(+):3Kb from tx start	Exon 10 of NOTCH2(-)	GRCh37	DUPLICATION	NOTCH2 (NM_024408) rearrangement: c.1583:NOTCH2_chr1:g.115569925dup	PRECISE		MANUAL_OK	5to3	-	4938249	NA	0	9	10	11
P-0029995-T01-IM6	SOMATIC	YAP1	YAP1	X	11	48896011	101983134	Intron of TFE3(-):44bp before exon 4	Intron of YAP1(+):1Kb after exon 1	GRCh37	TRANSLOCATION	YAP1 - (NM_001130145) - TFE3 (NM_006521) Fusion (YAP1 exon1 with TFE3 exon4) :  t(X;11)(q22.1;p11.23)(chrX:g.48896011::chr11:g.101983134)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {YAP1:TFE3}	0	NA	0	69	10	69
P-0030121-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86564694	86599940	Exon 1 of RASA1(+)	Intron of RASA1(+):27Kb before exon 2	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.426_c.540-27225del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	35246	NA	0	17	10	17
P-0030979-T02-IM6	SOMATIC	CREBBP	CREBBP	16	16	3790539	3885675	Exon 24 of CREBBP(-)	Intron of CREBBP(-):15Kb after exon 2	GRCh37	DELETION	CREBBP(NM_004380) Rearrangement: c.798+14623_c.3994del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	95136	NA	0	60	10	86
P-0032256-T01-IM6	SOMATIC	OXCT1	MAP3K1	5	5	41850660	56181774	Intron of OXCT1(-):379bp before exon 5	Exon 17 of MAP3K1(+)	GRCh37	INVERSION	OXCT1 (NM_00043) - MAP3K1 (NM_005921) Rearrangement : c.415-379:OXCT1_c.3998:MAP3K1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {OXCT1:MAP3K1}	14331114	NA	0	33	10	37
P-0032339-T02-IM6	SOMATIC	NAB2	STAT6	12	12	57488938	57495349	3-UTR of NAB2(+):6Kb after coding stop	Intron of STAT6(-):723bp after exon 13	GRCh37	INVERSION	NAB2(NM_005967) - STAT6(NM_003153) Rearrangement: c.*434:NAB2_c.1512+724:STAT6inv	PRECISE		MANUAL_OK	5to5	-	6411	NA	0	12	10	19
P-0032339-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11071793	11118548	5-UTR of SMARCA4(+):23Kb before coding start	Intron of SMARCA4(+):29bp before exon 14	GRCh37	DELETION	SMARCA4(NM_003072) Rearrangement: c.-89_c.2002-30del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	46755	NA	0	11	0	11
P-0034268-T01-IM6	SOMATIC	CBL	CBL	11	11	104728227	119103375	IGR: 28Kb before CASP12(-)	Exon 2 of CBL(+)	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.413:CBL_chr11:g.104728227del	PRECISE		MANUAL_OK	3to5	-	14375148	NA	0	13	10	13
P-0034268-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139347276	139403372	Intron of SEC16A(-):603bp after exon 22	Exon 19 of NOTCH1(-)	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.6159+604:SEC16A_c.3121:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	56096	NA	0	14	10	15
P-0035767-T06-IM7	SOMATIC	ETV6	NTRK3	15	12	88505787	12029143	Intron of NTRK3(-):22Kb before exon 15	Intron of ETV6(+):6Kb after exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12029143::chr15:g.88505787)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	133	10	132
P-0035825-T01-IM6	SOMATIC	TP53	TP53	17	11	7578421	48110744	Exon 5 of TP53(-)	Intron of PTPRJ(+):21Kb before exon 2	GRCh37	TRANSLOCATION	TP53 (NM_000546) Rearrangement : t(11,17)(p11.2,p13.1)(chr11:g.48110744::chr17:g.7578421)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	47	10	48
P-0036092-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316218	43610413	Intron of KIF5B(-):1Kb after exon 15	Intron of RET(+):229bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion (KIF5B exons 1-15 fused to RET exons 12-20): c.1725+1138:KIF5B_c.2136+229:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294195	NA	1	181	10	225
P-0036826-T01-IM6	SOMATIC	AURKA	FAM114A2	20	5	54945351	153381607	Exon 9 of AURKA(-)	Intron of FAM114A2(-):203bp after exon 11	GRCh37	TRANSLOCATION	AURKA (NM_003600) - FAM114A2 (NM_018691) rearrangement: t(5;20)(q33.2;q13.2)(chr5:g.153381607::chr20:g.54945351)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AURKA:FAM114A2}	0	NA	0	16	10	18
P-0036826-T01-IM6	SOMATIC	TMPRSS2	ZCCHC6	21	9	42869032	88940236	Intron of TMPRSS2(-):1Kb after exon 2	Intron of ZCCHC6(-):12bp after exon 12	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ZCCHC6 (NM_024617) rearrangement: t(9;21)(q21.33;q22.3)(chr9:g.88940236::chr21:g.42869032)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	17	10	21
P-0037021-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42868723	43538595	Intron of TMPRSS2(-):1Kb after exon 2	Intron of UMODL1(+):625bp before exon 15	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+1323:TMPRSS2_chr21:g.43538595del	PRECISE		MANUAL_OK	3to5	-	669872	NA	0	30	10	31
P-0037088-T01-IM6	SOMATIC	FAM83B	NOTCH4	6	6	32187450	54754439	Exon 8 of NOTCH4(-)	Intron of FAM83B(+):19Kb after exon 2	GRCh37	INVERSION	FAM83B (NM_001010872) -NOTCH4(NM_004557) Rearrangement : c.444+18951:FAM83B_c.1429:NOTCH4inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {FAM83B:NOTCH4}	22566989	NA	0	5	0	5
P-0037151-T01-IM6	SOMATIC	MAPK3	MAPK3	16	16	30128466	30130544	Intron of MAPK3(-):8bp after exon 6	Intron of MAPK3(-):685bp before exon 3	GRCh37	DUPLICATION	MAPK3 (NM_002746) Rearrangement : c.354-685_c.907+9dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	2078	NA	0	3	3	3
P-0037151-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39835707	42876100	Intron of ERG(-):18Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (TMPRSS2 exon1 with ERG exon2): c.55+3777:TMPRSS2_c.40-18163::ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3040393	NA	0	56	10	62
P-0037162-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89259466	89261591	Exon 3 of EPHA3(+)	Intron of EPHA3(+):2Kb after exon 3	GRCh37	INVERSION	EPHA3 (NM_005233) Rearrangement : c.610_c.814+1921inv	PRECISE		MANUAL_OK	5to5	-	2125	NA	0	14	10	17
P-0037171-T01-IM6	SOMATIC	ABL1	ABL1	9	9	133517056	133748253	IGR: 15Kb before MIR6856(+)	Exon 6 of ABL1(+)	GRCh37	INVERSION	ABL1 (NM_005157) rearrangement: c.914:ABL1_chr9:g.133517056inv	PRECISE		MANUAL_OK	5to5	-	231197	NA	0	15	10	19
P-0037177-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39826705	42871794	Intron of ERG(-):9Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1678:TMPRSS2_c.19-9161:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3045089	NA	0	56	10	57
P-0037198-T01-IM6	SOMATIC	PARP1	NVL	1	1	224483604	226564624	Intron of NVL(-):598bp after exon 9	Intron of PARP1(-):184bp after exon 13	GRCh37	DELETION	PARP1 (NM_001618) - NVL (NM_002533) rearrangement: c.1941+185:PARP1_c.1180+599:NVLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PARP1:NVL}	2081020	NA	0	12	10	13
P-0037198-T01-IM6	SOMATIC	UPF1	ATAT1	19	6	18971862	30606726	Intron of UPF1(+):71bp after exon 17	Intron of ATAT1(+):1Kb before exon 7	GRCh37	TRANSLOCATION	UPF1 (NM_002911) - ATAT1 (NM_001031722) rearrangement: t(6;19)(p21.33;p13.11)(chr6:g.30606726::chr19:g.18971862)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {UPF1:ATAT1}	0	NA	0	61	10	68
P-0037268-T01-IM6	SOMATIC	RET	RET	10	10	43148631	43597761	IGR: 20Kb before LINC01518(-)	Intron of RET(+):28bp before exon 3	GRCh37	DELETION	RET (NM_020975) rearrangement: c.338-29_chr10:g.43148631del	PRECISE		MANUAL_OK	3to5	-	449130	NA	0	9	9	9
P-0037268-T01-IM6	SOMATIC	RASA1	RASA1	5	5	86060945	86670012	IGR: 18Kb before LOC100505878(+)	Exon 14 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: chr5:g.86060945_c.1809del	PRECISE		MANUAL_OK	3to5	-	609067	NA	0	66	10	69
P-0037373-T01-IM6	SOMATIC	MTOR	KAZN	1	1	11259231	15343833	Intron of MTOR(-):83bp after exon 28	Intron of KAZN(+):17Kb before exon 3	GRCh37	INVERSION	MTOR (NM_004958) - KAZN (NM_201628) rearrangement: c.4253+84:MTOR_c.419-17412:KAZNinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MTOR:KAZN}	4084602	NA	0	6	0	6
P-0037373-T01-IM6	SOMATIC	PPP1R18	MDC1	6	6	30651258	30673130	Intron of PPP1R18(-):926bp after exon 2	Exon 10 of MDC1(-)	GRCh37	DUPLICATION	PPP1R18 (NM_001134870) - MDC1 (NM_014641) rearrangement: c.1611+927:PPP1R18_c.3830:MDC1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PPP1R18:MDC1}	21872	NA	1	80	10	88
P-0037375-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32891464	32910532	Intron of BRCA2(+):800bp after exon 2	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.67+800_c.2040del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19068	NA	0	37	10	40
P-0037529-T01-IM6	SOMATIC	BCL2L1	BCL2L1	20	20	30268980	30309648	Intron of BCL2L1(-):15Kb before exon 3	Exon 2 of BCL2L1(-)	GRCh37	INVERSION	BCL2L1 (NM_138578) rearrangement: c.374_c.565-15091:inv	PRECISE		MANUAL_OK	3to3	-	40668	NA	0	114	10	114
P-0037691-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871604	42871198	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_182918) Fusion (TMPRSS2 exon1 fused with ERG exon1): c.56-1082:TMPRSS2_c.-1300:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2999594	NA	0	90	0	93
P-0037751-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941388	42872642	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG(NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon 4 - 10) : c.56-2526:TMPRSS2_c.39+6198:ERG del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2931254	NA	1	113	10	163
P-0037751-T01-IM6	SOMATIC	ST7	MET	7	7	116399527	116756324	Exon 10 of MET(+)	Intron of ST7(+):3Kb before exon 3	GRCh37	DUPLICATION	ST7 (NM_021908) - MET (NM_000245) Rearrangement: c.235-3291:ST7_c.2347:METdel	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ST7:MET}	356797	NA	0	51	10	52
P-0039290-T01-IM6	SOMATIC	NF1	NF1	17	17	29676181	29688320	Exon 49 of NF1(+)	Intron of NF1(+):599bp after exon 57	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.7233_c.8377+599dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	12139	NA	0	16	10	17
P-0039513-T01-IM6	SOMATIC	WHSC1	WASF3	13	4	27230973	1941497	Intron of WASF3(+):8Kb before exon 4	Exon 9 of WHSC1(+)	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) - WASF3 (NM_006646) rearrangement: t(4;13)(p16.3;q12.13)(chr4:g.1941497::chr13:g.27230973)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WHSC1:WASF3}	0	NA	0	13	10	13
P-0039702-T01-IM6	SOMATIC	TP63	TP63	17	3	76788637	189586502	IGR: 4Kb before USP36(-)	Exon 8 of TP63(+)	GRCh37	TRANSLOCATION	TP63 (NM_003722) rearrangement: t(3;17)(q28;q25.3)(chr3:g.189586502::chr17:g.76788637)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	6
P-0039706-T01-IM6	SOMATIC	RPS6KA4	RPS6KA4	11	11	64132309	64136956	Intron of RPS6KA4(+):463bp before exon 9	Exon 13 of RPS6KA4(+)	GRCh37	INVERSION	RPS6KA4 (NM_003942) rearrangement: c.907-464_c.1467inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4647	NA	0	11	10	11
P-0039706-T01-IM6	SOMATIC	INSR	INSR	19	19	7267365	7275266	Exon 2 of INSR(-)	Intron of INSR(-):7Kb before exon 2	GRCh37	DELETION	INSR (NM_000208) rearrangement: c.101-7359_c.643del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7901	NA	0	18	10	18
P-0039706-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176631218	176632947	Exon 4 of NSD1(+)	Intron of NSD1(+):2Kb after exon 4	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.1161_c.1236+1654del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1729	NA	0	50	10	116
P-0039720-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8073158	8075533	3-UTR of ERRFI1(-):111bp after coding stop	Intron of ERRFI1(-):21bp after exon 2	GRCh37	DELETION	ERRFI1 (NM_018948) rearrangement: c.125+22:ERRFI1_chr1:g.8073158del	PRECISE		MANUAL_OK	3to5	-	2375	NA	0	77	10	115
P-0039794-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55108237	55223147	Intron of EGFR(+):21Kb after exon 1	Intron of EGFR(+):375bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+21179_c.890-376del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	114910	NA	0	19	10	20
P-0039794-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44850222	44921942	Intron of KDM6A(+):16Kb after exon 4	Exon 15 of KDM6A(+)	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.384+16262_c.1476dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	71720	NA	0	25	10	25
P-0039932-T01-IM6	SOMATIC	CREBBP	CREBBP	19	16	15859804	3781315	IGR: 8Kb before OR10H3(+)	Exon 30 of CREBBP(-)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(16;19)(p13.3;p13.12)(chr16:g.3781315::chr19:g.15859804)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	170	10	187
P-0040085-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46243406	46244543	Exon 14 of ARID2(+)	Exon 15 of ARID2(+)	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.1759_c.2637inv	PRECISE		MANUAL_OK	5to5	-	1137	NA	0	2	7	2
P-0040268-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15282534	15291967	Intron of NOTCH3(-):898bp before exon 26	Exon 18 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2799_c.4737-898del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9433	NA	0	5	9	5
P-0040442-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685161	128673571	Intron of EWSR1(+):386bp after exon 9	Intron of FLI1(+):2Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128673571::chr22:g.29685161)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	156	10	171
P-0040647-T01-IM6	SOMATIC	STK11	STK11	19	19	1205106	1218369	Promoter of STK11(+):691bp from tx start	Intron of STK11(+):46bp before exon 2	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-47:STK11_chr19:g.1205106del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13263	NA	0	42	10	43
P-0040647-T01-IM6	SOMATIC	CD74	CD74	5	5	149783047	150023108	Intron of CD74(-):172bp before exon 7	Intron of SYNPO(+):4Kb before exon 3	GRCh37	DUPLICATION	CD74 (NM_001025159) rearrangement: c.626-172:CD74_chr5:g.150023108dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	240061	NA	0	32	10	34
P-0040698-T01-IM6	SOMATIC	PIK3R3	MEGF6	1	1	3415201	46512290	Intron of MEGF6(-):60bp after exon 25	Exon 8 of PIK3R3(-)	GRCh37	DELETION	PIK3R3 (NM_003629) - MEGF6 (NM_001409) rearrangement: c.949:PIK3R3_c.3223+61:MEGF6del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PIK3R3:MEGF6}	43097089	NA	0	7	0	7
P-0040698-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11186824	47367819	Exon 46 of MTOR(-)	Promoter of CYP4Z2P(-):59Kb from tx start	GRCh37	INVERSION	MTOR (NM_004958) rearrangement: c.6381:MTOR_chr1:g.47367819inv	PRECISE		MANUAL_OK	3to3	-	36180995	NA	0	15	10	17
P-0040700-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981513	201983936	Exon 4 of ELF3(+)	Intron of ELF3(+):400bp before exon 9	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.427_c.1002-401inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2423	NA	0	2	10	4
P-0040725-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48566953	48584741	5-UTR of SMAD4(+):6Kb before coding start	Exon 7 of SMAD4(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.819:SMAD4_chr18:g.48566953inv	PRECISE		MANUAL_OK	5to5	-	17788	NA	0	4	7	4
P-0040725-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	4	15298887	87214736	Intron of NOTCH3(-):82bp before exon 10	5-UTR of MAPK10(-):276Kb before coding start	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(4;19)(q21.3;p13.12)(chr4:g.87214736::chr19:g.15298887)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MAPK10:NOTCH3}	0	NA	0	9	10	9
P-0040725-T01-IM6	SOMATIC	PGR	PGR	21	11	42365359	100920710	IGR: 148Kb before LINC00323(-)	Exon 6 of PGR(-)	GRCh37	TRANSLOCATION	PGR (NM_000926) rearrangement: t(11;21)(q22.1;q22.2)(chr11:g.100920710::chr21:g.42365359)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0040725-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	2	24133878	239860155	Intron of SMARCB1(+):64bp before exon 2	IGR: 19Kb before FLJ43879(-)	GRCh37	TRANSLOCATION	SMARCB1 (NM_003073) rearrangement: t(2;22)(q37.3;q11.23)(chr2:g.239860155::chr22:g.24133878)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	9	8	9
P-0040755-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156836140	157625604	Intron of NTRK1(+):561bp before exon 4	IGR: 22Kb before FCRL3(-)	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.360-562:NTRK1_chr1:g.157625604del	PRECISE		MANUAL_OK	3to5	-	789464	NA	0	118	10	206
P-0040755-T01-IM6	SOMATIC	NF1	NF1	17	3	29664297	125890858	Intron of NF1(+):88bp before exon 43	Intron of ALDH1L1(-):9Kb after exon 1	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(3;17)(q21.3;q11.2)(chr3:g.125890858::chr17:g.29664297)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	41	10	41
P-0040783-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59757201	59858382	3-UTR of BRIP1(-):3Kb after coding stop	Intron of BRIP1(-):16bp before exon 12	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.1629-16:BRIP1_chr17:g.59757201inv	PRECISE		MANUAL_OK	3to3	-	101181	NA	0	9	10	9
P-0040834-T01-IM6	SOMATIC	STAT3	STAT3	21	17	31721063	40485875	Promoter of KRTAP23-1(-):347bp from tx start	Intron of STAT3(-):33bp after exon 9	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(17;21)(q21.2;q22.11)(chr17:g.40485875::chr21:g.31721063)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {KRTAP23-1:STAT3}	0	NA	0	19	10	20
P-0040834-T01-IM6	SOMATIC	RUNX1	RUNX1	21	21	36265254	38804697	Exon 3 of RUNX1(-)	Intron of DYRK1A(+):12Kb after exon 1	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.65:RUNX1_chr21:g.38804697del	PRECISE		MANUAL_OK	3to5	-	2539443	NA	0	37	10	37
P-0040834-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40357633	42869222	IGR: 11Kb before LOC101928435(-)	Intron of TMPRSS2(-):823bp after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.126+824:TMPRSS2_chr21:g.40357633inv	PRECISE		MANUAL_OK	5to5	-	2511589	NA	0	42	10	44
P-0040834-T01-IM6	SOMATIC	RUNX1	RUNX1	21	6	36259248	102047418	Exon 4 of RUNX1(-)	Intron of GRIK2(+):22Kb before exon 2	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) rearrangement: t(6;21)(q16.3;q22.12)(chr6:g.102047418::chr21:g.36259248)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	35	10	36
P-0040854-T01-IM6	SOMATIC	SLC25A21	FOXA1	14	14	37550053	38061992	Intron of SLC25A21(-):91Kb after exon 1	Intron of FOXA1(-):76bp before exon 2	GRCh37	DUPLICATION	SLC25A21 (NM_030631) - FOXA1 (NM_004496) rearrangement: c.70+91433:SLC25A21_c.73-76:FOXA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SLC25A21:FOXA1}	511939	NA	0	63	10	65
P-0041181-T01-IM6	SOMATIC	PTPRZ1	BRAF	7	7	121677193	140492428	Intron of PTPRZ1(+):457bp after exon 18	Intron of BRAF(-):2Kb after exon 8	GRCh37	INVERSION	PTPRZ1 (NM_002851) - BRAF (NM_004333) fusion: c.5367+457:PTPRZ1_c.1140+1680:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PTPRZ1:BRAF}	18815235	NA	0	3	7	5
P-0041412-T01-IM6	SOMATIC	CDK12	CDK12	17	17	37667993	37687100	Intron of CDK12(+):110bp after exon 8	Exon 14 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.2768+110_c.4004del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19107	NA	0	7	10	7
P-0041420-T01-IM6	SOMATIC	MTUS2	BRCA2	13	13	29930033	32937544	Intron of MTUS2(+):3Kb before exon 6	Exon 18 of BRCA2(+)	GRCh37	DELETION	MTUS2 (NM_001033602) - BRCA2 (NM_000059) rearrangement: c.2936-3366:MTUS2_c.8205:BRCA2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MTUS2:BRCA2}	3007511	NA	0	25	10	25
P-0041420-T01-IM6	SOMATIC	ATR	ATR	3	3	142241682	142242828	Exon 23 of ATR(-)	Intron of ATR(-):6bp after exon 22	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.4152+7_c.4154del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1146	NA	0	2	7	2
P-0041510-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148430050	148543507	Intron of CUL1(+):3Kb after exon 2	Intron of EZH2(-):54bp after exon 3	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.246+55:EZH2_chr7:g.148430050del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	113457	NA	0	47	10	48
P-0041549-T01-IM6	SOMATIC	NF1	NF1	17	17	7263421	29508314	Promoter of TMEM95(+):5Kb from tx start	Intron of NF1(+):125bp before exon 6	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.587-126:NF1_chr17:g.7263421del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMEM95:NF1}	22244893	NA	0	8	10	12
P-0041549-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853771	42867111	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):606bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-606:TMPRSS2_c.18+16516:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3013340	NA	0	40	10	41
P-0041573-T01-IM6	SOMATIC	IDH2	IDH2	15	15	74624615	90633626	Intron of CCDC33(+):404bp before exon 16	Intron of IDH2(-):84bp after exon 3	GRCh37	DELETION	IDH2 (NM_002168) rearrangement: c.373+85:IDH2_chr15:g.74624615del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	16009011	NA	0	50	10	53
P-0041839-T01-IM6	SOMATIC	KMT2D	KMT2D	17	12	27777355	49445795	5-UTR of TAOK1(+):1Kb before coding start	Exon 10 of KMT2D(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(12;17)(q13.12;q11.2)(chr12:g.49445795::chr17:g.27777355)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	127	10	136
P-0041839-T01-IM6	SOMATIC	EZH1	IFT122	17	3	40855707	129159579	Intron of EZH1(-):50bp after exon 19	Intron of IFT122(+):365bp after exon 1	GRCh37	TRANSLOCATION	EZH1 (NM_001991) - IFT122 (NM_052989) rearrangement: t(3;17)(q21.3;q21.2)(chr3:g.129159579::chr17:g.40855707)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {EZH1:IFT122}	0	NA	0	87	10	95
P-0041839-T01-IM6	SOMATIC	FGFR3	FGFR3	17	4	38218905	1808156	5-UTR of THRA(+):12Kb before coding start	Intron of FGFR3(+):102bp after exon 15	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;17)(p16.3;q21.1)(chr4:g.1808156::chr17:g.38218905)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	8	10	8
P-0041945-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868451	42867165	Intron of ERG(-):2Kb after exon 1	Intron of TMPRSS2(-):660bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-660:TMPRSS2_c.18+1836:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2998714	NA	0	8	10	8
P-0042021-T01-IM6	SOMATIC	SYK	SYK	9	9	20928485	93606385	Intron of FOCAD(+):871bp before exon 29	Exon 2 of SYK(+)	GRCh37	INVERSION	SYK (NM_003177) rearrangement: c.205:SYK_chr9:g.20928485inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	72677900	NA	0	26	10	26
P-0042084-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	38056065	38061177	Promoter of FOXA1(-):3Kb from tx start	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.812:FOXA1_chr14:g.38056065del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5112	NA	0	8	10	12
P-0042119-T01-IM6	SOMATIC	H3F3C	H3F3C	12	12	6876051	31945012	Intron of PTMS(+):135bp after exon 1	Exon 1 of H3F3C(-)	GRCh37	DELETION	H3F3C (NM_001013699) rearrangement: c.89:H3F3C_chr12:g.6876051del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	25068961	NA	0	21	10	22
P-0042119-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12026331	31516226	Intron of ETV6(+):3Kb after exon 5	IGR: 19Kb before DENND5B(-)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.1009+3428:ETV6_chr12:g.31516226inv	PRECISE		MANUAL_OK	3to3	-	19489895	NA	0	1001	10	1187
P-0042119-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18435326	49201810	Exon 2 of PIK3C2G(+)	IGR: 6Kb before CACNB3(+)	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.311:PIK3C2G_chr12:g.49201810del	PRECISE		MANUAL_OK	3to5	-	30766484	NA	0	40	10	41
P-0042119-T01-IM6	SOMATIC	NTHL1	NTHL1	20	16	1215450	2093709	Intron of RAD21L1(+):615bp after exon 5	Exon 4 of NTHL1(-)	GRCh37	TRANSLOCATION	NTHL1 (NM_002528) rearrangement: t(16;20)(p13.3;p13)(chr16:g.2093709::chr20:g.1215450)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	51	10	51
P-0042122-T01-IM6	SOMATIC	CHEK1	CHEK1	11	11	125511935	125514304	Intron of CHEK1(+):2Kb before exon 9	Intron of CHEK1(+):102bp before exon 11	GRCh37	DELETION	CHEK1 (NM_001274) rearrangement: c.815-1752_c.1102-103del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2369	NA	0	3	10	3
P-0042157-T01-IM6	SOMATIC	TRAF7	TRAF7	17	16	75302737	2223406	Intron of SEPT9(+):485bp before exon 2	Intron of TRAF7(+):6bp after exon 10	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(16;17)(p13.3;q25.3)(chr16:g.2223406::chr17:g.75302737)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	8	0	7
P-0042157-T01-IM6	SOMATIC	NCOR1	TANC2	17	17	16056654	61468322	Exon 7 of NCOR1(-)	Intron of TANC2(+):1Kb after exon 15	GRCh37	INVERSION	NCOR1 (NM_006311) - TANC2 (NM_025185) rearrangement: c.788:NCOR1_c.2829+1417:TANC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NCOR1:TANC2}	45411668	NA	0	36	10	41
P-0042157-T01-IM6	SOMATIC	SPOP	SPOP	17	17	47696841	47707025	Intron of SPOP(-):94bp before exon 4	5-UTR of SPOP(-):29Kb before coding start	GRCh37	DELETION	SPOP (NM_001007228) rearrangement: c.201-94:SPOP_chr17:g.47707025del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	10184	NA	0	10	10	11
P-0042218-T01-IM6	SOMATIC	ATR	ATR	3	3	142023210	142275223	Promoter of XRN1(-):2Kb from tx start	Intron of ATR(-):1bp after exon 9	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.2078+2:ATR_chr3:g.142023210del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ATR:XRN1}	252013	NA	0	7	10	9
P-0042310-T01-IM6	SOMATIC	SMAD3	SMAD3	15	15	67482838	67506410	Exon 9 of SMAD3(+)	Intron of AAGAB(-):5Kb before exon 6	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.1242:SMAD3_chr15:g.67506410del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	23572	NA	0	79	10	81
P-0042588-T01-IM6	SOMATIC	ARID1A	ARID1A	15	1	78248444	27107174	IGR: 37Kb before LOC91450(-)	Exon 20 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;15)(p36.11;q24.3)(chr1:g.27107174::chr15:g.78248444)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	46	10	50
P-0042656-T01-IM6	SOMATIC	ERCC2	ERCC2	19	19	45861032	45903488	Intron of ERCC2(-):75bp before exon 13	5-UTR of PPP1R13L(-):20Kb before coding start	GRCh37	DELETION	ERCC2 (NM_000400) rearrangement: c.1238-75:ERCC2_chr19:g.45903488del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {PPP1R13L:ERCC2}	42456	NA	0	5	10	5
P-0042656-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148415342	148523596	5-UTR of CUL1(+):12Kb before coding start	Exon 8 of EZH2(-)	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.857:EZH2_chr7:g.148415342del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	108254	NA	0	21	10	21
P-0042823-T01-IM6	SOMATIC	MSI2	MSI2	17	2	55339568	83485930	Intron of MSI2(+):15bp after exon 5	IGR: 402Kb before LOC1720(+)	GRCh37	TRANSLOCATION	MSI2 (NM_138962) rearrangement: t(2;17)(p11.2;q22)(chr2:g.83485930::chr17:g.55339568)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	5
P-0042847-T01-IM6	SOMATIC	EWSR1	SYNRG	22	17	29694784	35924312	Exon 15 of EWSR1(+)	Intron of SYNRG(-):3Kb before exon 11	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - SYNRG (NM_007247) rearrangement: t(17;22)(q12;q12.2)(chr17:g.35924312::chr22:g.29694784)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:SYNRG}	0	NA	4	185	10	178
P-0042965-T01-IM6	SOMATIC	TPR	NTRK1	1	1	156843703	186318824	Exon 8 of NTRK1(+)	Intron of TPR(-):530bp after exon 21	GRCh37	INVERSION	TPR (NM_003292) - NTRK1 (NM_002529) fusion: c.2776+531:TPR_c.1129:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPR:NTRK1}	29475121	NA	0	101	10	127
P-0043039-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56438444	56439937	Intron of RNF43(-):139bp before exon 7	Exon 6 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.655_c.688-139del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1493	NA	0	176	10	195
P-0043090-T01-IM6	SOMATIC	RECQL4	CSMD3	8	8	114138459	145739383	Intron of CSMD3(-):27Kb before exon 5	Exon 12 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) - CSMD3 (NM_198123) rearrangement: c.1987:RECQL4_c.710-27267:CSMD3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RECQL4:CSMD3}	31600924	NA	0	4	10	4
P-0043122-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72983376	72984621	Intron of ZFHX3(-):991bp after exon 3	Exon 3 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.2963_c.3216+992del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1245	NA	0	53	10	54
P-0043160-T01-IM6	SOMATIC	RCBTB2	RB1	13	13	49037897	49088096	Exon 21 of RB1(+)	Intron of RCBTB2(-):1Kb before exon 7	GRCh37	INVERSION	RCBTB2 (NM_001268) - RB1 (NM_000321) rearrangement: c.350-1065:RCBTB2_c.2137:RB1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RCBTB2:RB1}	50199	NA	0	46	10	53
P-0043201-T01-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185146820	185150753	Exon 2 of MAP3K13(+)	Intron of MAP3K13(+):4Kb after exon 2	GRCh37	INVERSION	MAP3K13 (NM_004721) rearrangement: c.451_c.475+3909inv	PRECISE		MANUAL_OK	5to5	-	3933	NA	0	16	10	18
P-0043226-T02-IM6	SOMATIC	TCF3	TCF3	19	19	1625706	1627357	Exon 6 of TCF3(-)	Exon 5 of TCF3(-)	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.366+1_c.368del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1651	NA	0	9	10	12
P-0043233-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30673162	30704580	Exon 10 of MDC1(-)	Intron of FLOT1(-):3Kb after exon 8	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.3798:MDC1_chr6:g.30704580inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	31418	NA	0	6	10	17
P-0043237-T01-IM6	SOMATIC	PGR	PGR	11	11	100908756	100909919	3-UTR of PGR(-):1Kb after coding stop	Exon 8 of PGR(-)	GRCh37	INVERSION	PGR (NM_000926) rearrangement: c.2730:PGR_chr11:g.100908756inv	PRECISE		MANUAL_OK	5to5	-	1163	NA	0	2	5	2
P-0043415-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	116498477	118391528	IGR: 120Kb before BUD13(-)	Exon 34 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.11441:KMT2A_chr11:g.116498477del	PRECISE		MANUAL_OK	3to5	-	1893051	NA	0	91	10	97
P-0043670-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	37866212	37917906	Intron of ERBB2(+):78bp after exon 5	3-UTR of IKZF3(-):4Kb after coding stop	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.643+78:ERBB2_chr17:g.37917906del	PRECISE		MANUAL_OK	3to5	-	51694	NA	0	9	10	10
P-0043727-T01-IM6	SOMATIC	CSDE1	FAM46C	1	1	115275654	118166200	Intron of CSDE1(-):217bp before exon 11	Exon 2 of FAM46C(+)	GRCh37	DELETION	CSDE1 (NM_001242891) - FAM46C (NM_017709) rearrangement: c.976-217:CSDE1_c.710:FAM46Cdel	PRECISE		MANUAL_OK	3to5	-	2890546	NA	0	40	10	42
P-0043904-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39807153	42870229	Intron of ERG(-):10Kb after exon 2	Intron of TMPRSS2(-):113bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-113:TMPRSS2_c.236+10174:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3063076	NA	0	8	0	8
P-0043950-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18968546	18975168	Intron of UPF1(+):204bp after exon 15	Intron of UPF1(+):108bp after exon 20	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.2182+204_c.2857+108inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	6622	NA	0	13	10	11
P-0044025-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15976884	16003261	Intron of NCOR1(-):1bp before exon 28	Intron of NCOR1(-):1Kb after exon 20	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.2690+1303_c.3671-1del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	26377	NA	0	29	10	28
P-0044084-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77030392	77051671	Promoter of PAK1(-):3Kb from tx start	Intron of PAK1(-):19bp after exon 11	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.1116+20:PAK1_chr11:g.77030392del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	21279	NA	0	16	10	19
P-0044166-T01-IM6	SOMATIC	PIK3CD	PIK3CD	1	1	9744256	9784172	5-UTR of PIK3CD(+):26Kb before coding start	Intron of PIK3CD(+):22bp after exon 21	GRCh37	DUPLICATION	PIK3CD (NM_005026) rearrangement: c.2718+22:PIK3CD_chr1:g.9744256dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	39916	NA	0	27	10	29
P-0044166-T01-IM6	SOMATIC	EIF4E	SHROOM3	4	4	77699401	99807448	Intron of SHROOM3(+):560bp before exon 11	Intron of EIF4E(-):781bp after exon 5	GRCh37	INVERSION	EIF4E (NM_001130678) - SHROOM3 (NM_020859) rearrangement: c.459+782:EIF4E_c.5623-561:SHROOM3inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {EIF4E:SHROOM3}	22108047	NA	0	6	0	8
P-0044224-T01-IM6	SOMATIC	EPCAM	EPCAM	2	2	47596767	47615051	Intron of EPCAM(+):47bp after exon 1	Promoter of EPCAM(+):19Kb from tx start	GRCh37	DELETION	EPCAM (NM_002354) rearrangement: c.76+47:EPCAM_chr2:g.47615051del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	18284	NA	0	71	10	79
P-0044224-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47636848	47641357	Intron of MSH2(+):384bp before exon 3	Intron of MSH2(+):50bp before exon 5	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.367-385_c.793-51del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4509	NA	0	5	0	5
P-0044255-T01-IM6	SOMATIC	NF1	NF1	17	17	29541389	29587575	Intron of NF1(+):79bp before exon 13	Intron of NF1(+):42bp after exon 34	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1393-80_c.4577+42dup	PRECISE		MANUAL_OK	5to3	Duplication of 22 exons : out of frame	46186	NA	0	8	10	12
P-0044255-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	8770811	10292729	IGR: 37Kb before ACTL9(-)	Exon 2 of DNMT1(-)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.105:DNMT1_chr19:g.8770811inv	PRECISE		MANUAL_OK	3to3	-	1521918	NA	0	7	7	8
P-0044255-T01-IM6	SOMATIC	KDR	KDR	4	4	55978673	55979521	Intron of KDR(-):797bp after exon 7	Exon 7 of KDR(-)	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.926_c.976+798inv	PRECISE		MANUAL_OK	3to3	-	848	NA	0	17	10	17
P-0044270-T02-IM6	SOMATIC	KIAA1549	BRAF	7	7	138544325	140491645	Intron of KIAA1549(-):2Kb after exon 16	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5247+1560:KIAA1549_c.1140+2463:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1947320	NA	0	10	10	9
P-0044325-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	117628118	118348706	Intron of DSCAML1(-):19Kb after exon 3	Exon 5 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.3359:KMT2A_chr11:g.117628118del	PRECISE		MANUAL_OK	3to5	-	720588	NA	0	55	10	55
P-0044366-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123241387	125122504	Intron of FGFR2(-):2Kb after exon 17	IGR: 209Kb before BUB3(+)	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2301+1825:FGFR2_chr10:g.125122504del	PRECISE		MANUAL_OK	3to5	-	1881117	NA	0	14	10	15
P-0044366-T01-IM6	SOMATIC	RECQL4	CYHR1	8	8	145682112	145738009	Intron of CYHR1(-):3Kb before exon 3	Intron of RECQL4(-):15bp after exon 17	GRCh37	DELETION	RECQL4 (NM_004260) - CYHR1 (NM_138496) rearrangement: c.2885+16:RECQL4_c.247-3269:CYHR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RECQL4:CYHR1}	55897	NA	0	5	7	5
P-0044372-T01-IM6	SOMATIC	SHOC2	SHOC2	19	10	57517645	112764201	IGR: 114Kb before USP29(+)	Intron of SHOC2(+):162bp before exon 5	GRCh37	TRANSLOCATION	SHOC2 (NM_007373) rearrangement: t(10;19)(q25.2;q13.43)(chr10:g.112764201::chr19:g.57517645)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	10	6
P-0044600-T01-IM6	SOMATIC	TET1	TET1	10	10	70401001	70450693	Intron of TET1(+):3Kb before exon 4	Exon 12 of TET1(+)	GRCh37	DUPLICATION	TET1 (NM_030625) rearrangement: c.1969-3454_c.5533dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	49692	NA	0	33	10	39
P-0044609-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94917737	95181943	Exon 6 of SESN3(-)	IGR: 219Kb before LOC100129203(+)	GRCh37	DELETION	SESN3 (NM_144665) rearrangement: c.784:SESN3_chr11:g.95181943del	PRECISE		MANUAL_OK	3to5	-	264206	NA	0	31	10	33
P-0044609-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1810024	1920049	3-UTR of FGFR3(+):14Kb after coding stop	Exon 5 of WHSC1(+)	GRCh37	DUPLICATION	WHSC1 (NM_001042424) rearrangement: c.1109:WHSC1_chr4:g.1810024dup	PRECISE		MANUAL_OK	5to3	-	110025	NA	0	9	10	9
P-0044647-T01-IM6	SOMATIC	NF1	NF1	17	17	29495497	29508753	Intron of NF1(+):1Kb before exon 5	Exon 7 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.480-1412_c.680inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	13256	NA	0	7	10	6
P-0044647-T01-IM6	SOMATIC	NF1	NF1	17	2	29546080	63115460	Exon 14 of NF1(+)	Intron of EHBP1(+):14Kb after exon 10	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(2;17)(p15;q11.2)(chr2:g.63115460::chr17:g.29546080)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	58	10	58
P-0044784-T01-IM6	SOMATIC	STAG2	STAG2	X	X	123184207	123200365	Intron of STAG2(+):48bp after exon 11	Intron of STAG2(+):79bp after exon 23	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1017+48_c.2265+79del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	16158	NA	0	4	5	4
P-0044856-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30713383	30808859	Exon 5 of TGFBR2(+)	Intron of GADL1(-):11Kb after exon 14	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.783:TGFBR2_chr3:g.30808859del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	95476	NA	0	8	7	8
P-0044955-T01-IM6	SOMATIC	POLE	POLE	12	12	128462756	133256174	3-UTR of LINC00508(-):6Kb after coding stop	Exon 6 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.487:POLE_chr12:g.128462756inv	PRECISE		MANUAL_OK	3to3	-	4793418	NA	0	166	10	166
P-0045046-T01-IM6	SOMATIC	STK11	STK11	X	19	155259729	1207210	Promoter of DDX11L16(-):4Kb from tx start	Intron of STK11(+):8bp after exon 1	GRCh37	TRANSLOCATION	STK11 (NM_000455) rearrangement: t(19;X)(p13.3;q28)(chr19:g.1207210::chrX:g.155259729)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {STK11:DDX11L16}	0	NA	0	28	0	59
P-0045227-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684323	128647321	Intron of EWSR1(+):271bp before exon 9	Intron of FLI1(+):4Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128647321::chr22:g.29684323)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	101	10	105
P-0045257-T02-IM6	SOMATIC	PAX5	PAX5	9	9	36990725	37006344	Intron of PAX5(-):12Kb after exon 5	Intron of PAX5(-):125bp after exon 4	GRCh37	DELETION	PAX5 (NM_016734) rearrangement: c.475+126_c.604+11920del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	15619	NA	0	6	8	6
P-0046149-T02-IM7	SOMATIC	FLCN	FLCN	17	17	13224293	17127270	IGR: 175Kb before HS3ST3A1(-)	Exon 6 of FLCN(-)	GRCh37	INVERSION	FLCN (NM_144997) rearrangement: c.584:FLCN_chr17:g.13224293inv	PRECISE		MANUAL_OK	5to5	-	3902977	NA	0	7	10	8
P-0047286-T01-IM6	SOMATIC	KMT2D	ACSS3	12	12	49421690	81534084	Exon 47 of KMT2D(-)	Intron of ACSS3(+):1Kb after exon 4	GRCh37	INVERSION	KMT2D (NM_003482) - ACSS3 (NM_024560) rearrangement: c.14539:KMT2D_c.780+1040:ACSS3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:ACSS3}	32112394	NA	0	41	10	41
P-0048889-T03-IM7	SOMATIC	MDM2	MDM2	12	12	69222480	69404188	Intron of MDM2(+):70bp before exon 8	IGR: 159Kb before CPM(-)	GRCh37	INVERSION	MDM2 (NM_002392) rearrangement: c.524-71:MDM2_chr12:g.69404188inv	PRECISE		MANUAL_OK	5to5	-	181708	NA	0	25	10	25
P-0048889-T03-IM7	SOMATIC	NTRK3	NTRK3	15	15	88420297	90427016	Exon 20 of NTRK3(-)	Intron of C15orf38-AP3S2(-):5Kb after exon 7	GRCh37	INVERSION	NTRK3 (NM_001012338) rearrangement: c.2389:NTRK3_chr15:g.90427016inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2006719	NA	0	10	10	14
P-0050976-T01-IM6	SOMATIC	TP53	TP53	17	17	7577003	7579626	Intron of TP53(-):15bp after exon 8	Intron of TP53(-):36bp before exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.97-36_c.919+16del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	2623	NA	0	105	10	117
P-0051485-T01-IM6	SOMATIC	MSI2	MSI2	17	17	48325187	55752227	IGR: 24Kb before TMEM92(+)	Intron of MSI2(+):105bp before exon 12	GRCh37	DELETION	MSI2 (NM_138962) rearrangement: c.791-106:MSI2_chr17:g.48325187del	IMPPRECISE		MANUAL_OK	3to5	-	7427040	NA	0	11	0	11
P-0051731-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39757915	39934361	IGR: 153Kb before BCOR(-)	Exon 4 of BCOR(-)	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.238:BCOR_chrX:g.39757915del	PRECISE		MANUAL_OK	3to5	-	176446	NA	0	4	8	4
P-0051781-T03-IM6	SOMATIC	CCDC6	RET	10	10	43610377	61651178	Intron of RET(+):193bp after exon 11	Intron of CCDC6(-):15Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+14702:CCDC6_c.2136+193:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18040801	NA	0	34	10	37
P-0052568-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89700429	89717704	Intron of PTEN(+):7Kb after exon 5	Exon 7 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.492+7421_c.729del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17275	NA	0	15	10	17
P-0052853-T04-IM7	SOMATIC	EZH1	EZH1	17	17	40862139	41197388	Intron of EZH1(-):184bp before exon 13	3-UTR of BRCA1(-):306bp after coding stop	GRCh37	INVERSION	EZH1 (NM_001991) rearrangement: c.1402-184:EZH1_chr17:g.41197388inv	PRECISE		MANUAL_OK	3to3	-	335249	NA	0	6	8	6
P-0059699-T03-IM7	SOMATIC	EML4	ALK	2	2	29447467	42526391	Intron of ALK(-):859bp after exon 19	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1990:EML4_c.3172+860:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078924	NA	0	40	10	40
P-0059867-T02-IM7	SOMATIC	BRAF	BRAF	7	7	140489123	140538271	Intron of BRAF(-):2Kb before exon 9	Intron of BRAF(-):4Kb before exon 3	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.241-3599_c.1141-1739del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	49148	NA	0	18	10	18
P-0059913-T01-IM7	SOMATIC	KIF5B	RET	10	10	32314915	43610108	Intron of KIF5B(-):2Kb after exon 15	Exon 11 of RET(+)	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2441:KIF5B_c.2060:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:RET}	11295193	NA	0	12	10	16
P-0059913-T01-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50484117	54293971	Exon 8 of SMARCD1(+)	IGR: 35Kb before HOXC13-AS(-)	GRCh37	INVERSION	SMARCD1 (NM_003076) rearrangement: c.967:SMARCD1_chr12:g.54293971inv	PRECISE		MANUAL_OK	5to5	-	3809854	NA	0	3	7	3
P-0059915-T01-IM7	SOMATIC	DNMT1	DNMT1	19	13	10246454	98401067	Exon 38 of DNMT1(-)	IGR: 205Kb before IPO5(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(13;19)(q32.2;p13.2)(chr13:g.98401067::chr19:g.10246454)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	21
P-0059917-T01-IM7	SOMATIC	ACVR1	ACVR1	2	2	32059634	158630845	IGR: 33Kb before MEMO1(-)	Intron of ACVR1(-):146bp before exon 6	GRCh37	INVERSION	ACVR1 (NM_001111067) rearrangement: c.544-146:ACVR1_chr2:g.32059634inv	PRECISE		MANUAL_OK	3to3	-	126571211	NA	0	13	10	14
P-0059930-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12011179	75421408	Intron of ETV6(+):5Kb after exon 4	IGR: 12Kb before KCNC2(-)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+4684:ETV6_chr12:g.75421408del	PRECISE		MANUAL_OK	3to5	-	63410229	NA	0	10	9	11
P-0059932-T01-IM7	SOMATIC	NF1	NF1	17	17	29579894	29582995	Intron of NF1(+):4Kb after exon 30	Intron of NF1(+):2Kb before exon 31	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4111-62_c.4174-2367dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within intron	3101	NA	0	7	0	7
P-0059934-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882213	42875622	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4255:TMPRSS2_c.40-64669:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993409	NA	0	54	10	55
P-0059938-T01-IM7	SOMATIC	RB1	ERCC5	13	13	48879154	103518282	Intron of RB1(+):969bp after exon 1	Intron of ERCC5(+):21bp after exon 9	GRCh37	INVERSION	RB1 (NM_000321) - ERCC5 (NM_000123) rearrangement: c.137+969:RB1_c.2199+21:ERCC5inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	54639128	NA	0	137	10	137
P-0059946-T01-IM7	SOMATIC	DNAJB1	DNAJB1	19	19	14628506	15720966	Intron of DNAJB1(-):444bp after exon 1	IGR: 5Kb before CYP4F8(+)	GRCh37	INVERSION	DNAJB1 (NM_006145) rearrangement: c.211+445:DNAJB1_chr19:g.15720966inv	PRECISE		MANUAL_OK	5to5	-	1092460	NA	0	49	10	51
P-0059952-T01-IM7	SOMATIC	ROS1	ROS1	14	6	59221074	117647596	IGR: 74Kb before LINC01500(+)	Intron of ROS1(-):19bp before exon 33	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;14)(q22.1;q23.1)(chr6:g.117647596::chr14:g.59221074)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	10	0	11
P-0059952-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89335116	89587340	Intron of ANKRD11(-):45bp before exon 13	Intron of SPG7(+):3Kb before exon 4	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.7807-45:ANKRD11_chr16:g.89587340del	PRECISE		MANUAL_OK	3to5	-	252224	NA	0	7	10	7
P-0059953-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	893013	5231239	5-UTR of MED16(-):25Kb before coding start	Intron of PTPRS(-):81bp after exon 14	GRCh37	DELETION	PTPRS (NM_002850) rearrangement: c.2155+82:PTPRS_chr19:g.893013del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {PTPRS:MED16}	4338226	NA	0	7	0	7
P-0059956-T01-IM7	SOMATIC	MAPK1	MAPK1	22	22	22161945	22164646	Intron of MAPK1(-):7bp after exon 2	Intron of MAPK1(-):3Kb before exon 2	GRCh37	DELETION	MAPK1 (NM_002745) rearrangement: c.120-2511_c.302+8del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2701	NA	0	8	10	8
P-0060595-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21973716	29737251	Intron of CDKN2A(-):3Kb before exon 2	IGR: 652Kb before LINC01242(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-2509:CDKN2A_chr9:g.29737251del	PRECISE		MANUAL_OK	3to5	-	7763535	NA	0	33	10	36
P-0060600-T01-IM7	SOMATIC	TBX3	TBX3	12	12	115112542	116235237	Exon 7 of TBX3(-)	IGR: 161Kb before MED13L(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.1198:TBX3_chr12:g.116235237del	IMPPRECISE		MANUAL_OK	3to5	-	1122695	NA	0	60	0	64
P-0060615-T01-IM7	SOMATIC	TMPRSS2	ETV4	21	17	42867024	41642479	Intron of TMPRSS2(-):519bp before exon 3	IGR: 37Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV4 (NM_001261437) rearrangement: t(17;21)(q21.31;q22.3)(chr17:g.41642479::chr21:g.42867024)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	24	10	24
P-0060619-T01-IM7	SOMATIC	ZNF365	ARID5B	10	10	63700022	64174968	Exon 3 of ARID5B(+)	Intron of ZNF365(+):27Kb after exon 3	GRCh37	DUPLICATION	ZNF365 (NM_199451) - ARID5B (NM_032199) rearrangement: c.924+26633:ZNF365_c.357:ARID5Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF365:ARID5B}	474946	NA	0	5	10	10
P-0052625-T03-IM7	SOMATIC	PTPRT	PTPRT	20	17	41306417	4359134	Intron of PTPRT(-):88bp after exon 7	Intron of SPNS3(+):3Kb after exon 8	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(17;20)(p13.2;q12)(chr17:g.4359134::chr20:g.41306417)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	32	10	32
P-0060393-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32911082	32912412	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.2590_c.3920del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1330	NA	0	20	10	20
P-0033615-T03-IM7	SOMATIC	GNAS	CREM	20	10	57479028	35491448	Intron of GNAS(+):182bp after exon 5	Intron of CREM(+):1Kb after exon 2	GRCh37	TRANSLOCATION	GNAS (NM_000516) - CREM (NM_181571) rearrangement: t(10;20)(p11.21;q13.32)(chr10:g.35491448::chr20:g.57479028)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {GNAS:CREM}	0	NA	0	22	10	22
P-0036181-T06-IM7	SOMATIC	HCFC1	ETV6	X	12	153221893	11905373	Intron of HCFC1(-):31bp before exon 16	Intron of ETV6(+):10bp before exon 2	GRCh37	TRANSLOCATION	HCFC1 (NM_005334) - ETV6 (NM_001987) rearrangement: t(12;X)(p13.2;q28)(chr12:g.11905373::chrX:g.153221893)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {HCFC1:ETV6}	0	NA	0	11	0	11
P-0057819-T02-IM7	SOMATIC	SPEN	SPEN	1	1	16236570	16260777	Intron of SPEN(+):594bp after exon 4	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.1042+594_c.8042del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	24207	NA	0	9	10	27
P-0059972-T01-IM7	SOMATIC	ALB	LARP6	15	4	71076314	74272626	IGR: 48Kb before LARP6(-)	Intron of ALB(+):148bp after exon 3	GRCh37	TRANSLOCATION	ALB (NM_000477) - LARP6 (NM_018357) rearrangement: t(4;15)(q13.3;q23)(chr4:g.74272626::chr15:g.71076314)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	30	10	31
P-0060293-T02-IM7	SOMATIC	PKM	PKM	15	15	50764096	72499254	Intron of USP8(+):104bp after exon 8	Intron of PKM(-):33bp before exon 8	GRCh37	DELETION	PKM (NM_001206796) rearrangement: g.50764096_c.1210-33del.	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	21735158	NA	0	12	0	12
P-0060347-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29685134	128648014	Intron of EWSR1(+):359bp after exon 9	Intron of FLI1(+):4Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128648014::chr22:g.29685134)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	45	10	45
P-0060580-T01-IM7	SOMATIC	CTR9	CTR9	11	11	10795769	11516996	Intron of CTR9(+):53bp after exon 22	Intron of GALNT18(-):47Kb before exon 2	GRCh37	INVERSION	CTR9 (NM_014633) rearrangement: c.2885+53_g.11516996inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CTR9:GALNT18}	721227	NA	0	18	10	18
P-0060582-T01-IM7	SOMATIC	FGFR2	CCDC73	11	10	32747346	123241248	Intron of CCDC73(-):8Kb before exon 3	Intron of FGFR2(-):2Kb before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - CCDC73 (NM_001008391) fusion: t(10;11)(q26.13;p13)(chr10:g.123241248::chr11:g.32747346)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:CCDC73}	0	NA	0	22	0	22
P-0060587-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865372	42874839	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4723:TMPRSS2_c.18+4915:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009467	NA	1	35	10	37
P-0060590-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974784	21978437	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):7Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-7230_c.194-3577del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3653	NA	0	36	10	40
P-0060610-T01-IM7	SOMATIC	RTEL1	RTEL1	20	20	62313805	62317137	Intron of RTEL1(+):2Kb after exon 14	Intron of RTEL1(+):6bp before exon 16	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.1263+1733_c.1339-7inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3332	NA	0	12	10	15
P-0060612-T01-IM7	SOMATIC	KEAP1	KEAP1	19	19	10591373	10600041	IGR: 5Kb before KEAP1(-)	Exon 5 of KEAP1(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1535:KEAP1_chr19:g.10591373del	PRECISE		MANUAL_OK	3to5	-	8668	NA	0	27	10	27
P-0060653-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935118	42879091	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):785bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+786:TMPRSS2_c.39+12468:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2943973	NA	0	93	10	95
P-0060655-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39851784	42869305	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):740bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+741:TMPRSS2_c.18+18503:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3017521	NA	0	23	10	23
P-0060661-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140450590	140494789	Intron of BRAF(-):1Kb before exon 16	Intron of BRAF(-):522bp before exon 8	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.981-522_c.1861-1372del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	44199	NA	0	13	10	13
P-0060665-T01-IM7	SOMATIC	CCND1	CCND1	11	2	69456099	118614279	Exon 1 of CCND1(+)	IGR: 42Kb before DDX18(+)	GRCh37	TRANSLOCATION	CCND1 (NM_053056) rearrangement: t(2;11)(q14.1;q13.3)(chr2:g.118614279::chr11:g.69456099)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	5
P-0060671-T01-IM7	SOMATIC	RAD54L	RAD54L	1	1	46729456	46740339	Intron of RAD54L(+):2Kb after exon 9	Exon 17 of RAD54L(+)	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.891+2399_c.1819inv	PRECISE		MANUAL_OK	5to5	-	10883	NA	0	58	10	69
P-0060673-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39870977	42874673	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4557:TMPRSS2_chr21:g.39870977del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3003696	NA	0	13	10	13
P-0060675-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39956960	42869447	3-UTR of ERG(-):77Kb after coding stop	Intron of TMPRSS2(-):598bp after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.126+599:TMPRSS2_chr21:g.39956960inv	PRECISE		MANUAL_OK	3to3	-	2912487	NA	0	3	6	3
P-0060675-T01-IM7	SOMATIC	IKZF1	IKZF1	7	7	50352898	50358715	5-UTR of IKZF1(+):6Kb before coding start	Intron of IKZF1(+):18bp after exon 2	GRCh37	INVERSION	IKZF1 (NM_006060) rearrangement: c.-14-5746_c.40+18inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5817	NA	0	6	10	6
P-0060714-T01-IM7	SOMATIC	JAK2	JAK2	9	9	4737022	5089544	Intron of AK3(-):4Kb after exon 1	Intron of JAK2(+):129bp before exon 20	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.2572-130:JAK2_chr9:g.4737022del	PRECISE		MANUAL_OK	3to5	-	352522	NA	0	6	10	6
P-0060714-T01-IM7	SOMATIC	PIK3R2	PIK3R2	19	19	18271721	18273082	Intron of PIK3R2(+):7bp before exon 4	Exon 8 of PIK3R2(+)	GRCh37	DELETION	PIK3R2 (NM_005027) rearrangement: c.416-8_c.972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1361	NA	0	18	10	20
P-0060714-T01-IM7	SOMATIC	EP300	EP300	22	22	41564541	41571894	Exon 24 of EP300(+)	Intron of EP300(+):356bp before exon 30	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.3963_c.4780-357dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7353	NA	0	9	10	10
P-0060714-T01-IM7	SOMATIC	USP8	USP8	15	15	46264877	50786150	IGR: 338Kb before SQRDL(+)	Intron of USP8(+):116bp before exon 16	GRCh37	INVERSION	USP8 (NM_005154) rearrangement: g.46264877_c.2448-117inv.	PRECISE		MANUAL_OK	5to5	-	4521273	NA	0	16	10	16
P-0060714-T01-IM7	SOMATIC	CD274	CD274	9	7	5466371	52543172	Intron of CD274(+):398bp before exon 6	IGR: 560Kb before POM121L12(+)	GRCh37	TRANSLOCATION	CD274 (NM_014143) rearrangement: t(7;9)(p12.1;p24.1)(chr7:g.52543172::chr9:g.5466371)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	62	10	61
P-0060717-T01-IM7	SOMATIC	GPS2	GPS2	17	17	7217441	7283565	Exon 5 of GPS2(-)	Promoter of TNK1(+):727bp from tx start	GRCh37	DELETION	GPS2 (NM_004489) rearrangement: c.355:GPS2_chr17:g.7283565del	PRECISE		MANUAL_OK	3to5	-	66124	NA	0	22	10	25
P-0000675-T04-IM7	SOMATIC	TMPRSS2	ERG	21	21	39860227	42870248	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):132bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-132:TMPRSS2_c.18+10060:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3010021	NA	0	146	10	151
P-0000675-T04-IM7	SOMATIC	NOTCH2	NOTCH2	8	1	97316895	120458336	Intron of PTDSS1(+):486bp after exon 7	Exon 34 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;8)(p12;q22.1)(chr1:g.120458336::chr8:g.97316895)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	263	0	307
P-0013379-T02-IM7	SOMATIC	NAB2	NAB2	19	12	31230276	57486174	IGR: 367Kb before ZNF536(+)	Intron of NAB2(+):56bp before exon 3	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;19)(q13.3;q12)(chr12:g.57486174::chr19:g.31230276)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	66	10	85
P-0016627-T05-IM7	SOMATIC	GLI1	GLI1	12	1	57857810	188655289	Exon 3 of GLI1(+)	IGR: 1Mb before BRINP3(-)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(1;12)(q31.1;q13.3)(chr1:g.188655289::chr12:g.57857810)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	105	10	105
P-0016627-T05-IM7	SOMATIC	GLI1	GLI1	12	12	52217795	57864084	5-UTR of FIGNL2(-):4Kb before coding start	Intron of GLI1(+):15bp before exon 12	GRCh37	DELETION	GLI1 (NM_005269) rearrangement: c.1577-16:GLI1_chr12:g.52217795del	PRECISE		MANUAL_OK	3to5	-	5646289	NA	0	104	10	107
P-0016627-T05-IM7	SOMATIC	PTPRD	PTPRD	9	7	8517959	62328179	Exon 21 of PTPRD(-)	IGR: 423Kb before ZNF733P(-)	GRCh37	TRANSLOCATION	PTPRD (NM_002839) rearrangement: t(7;9)(q11.21;p24.1)(chr7:g.62328179::chr9:g.8517959)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	34	10	34
P-0032111-T03-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	66096453	67202046	IGR: 3Kb before RIN1(-)	Intron of RPS6KB2(+):6bp before exon 14	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.1156-7:RPS6KB2_chr11:g.66096453inv	PRECISE		MANUAL_OK	5to5	-	1105593	NA	0	22	10	42
P-0032111-T03-IM7	SOMATIC	REL	REL	2	2	61122513	61149056	Intron of REL(+):833bp after exon 3	Exon 11 of REL(+)	GRCh37	DELETION	REL (NM_002908) rearrangement: c.302+833_c.1246del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	26543	NA	0	4	10	4
P-0032111-T04-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	66096453	67202046	IGR: 3Kb before RIN1(-)	Intron of RPS6KB2(+):6bp before exon 14	GRCh37	INVERSION	RPS6KB2 (NM_003952) rearrangement: c.1156-7:RPS6KB2_chr11:g.66096453inv	PRECISE		MANUAL_OK	5to5	-	1105593	NA	0	8	10	15
P-0041506-T02-IM7	SOMATIC	ESR1	CCDC170	6	6	151922856	152129136	Intron of CCDC170(+):5Kb after exon 9	Exon 2 of ESR1(+)	GRCh37	DUPLICATION	ESR1 (NM_001122740) - CCDC170 (NM_025059) rearrangement: c.89:ESR1_NM_025059.3:c.1710+5144:cCDC170dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ESR1:CCDC170}	206280	NA	0	7	10	7
P-0042110-T02-IM7	SOMATIC	INPPL1	FAT3	11	11	71939487	92457383	Exon 3 of INPPL1(+)	Intron of FAT3(+):27Kb after exon 3	GRCh37	DELETION	INPPL1 (NM_001567) - FAT3 (NM_001008781) rearrangement: c.342:INPPL1_c.3669+26772:FAT3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {INPPL1:FAT3}	20517896	NA	0	6	9	9
P-0054381-T02-IM7	SOMATIC	NTRK1	NTRK1	1	1	154137975	156845184	Intron of TPM3(-):5Kb after exon 6	Intron of NTRK1(+):127bp before exon 12	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1355-128:NTRK1_chr1:g.154137975inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NTRK1:TPM3}	2707209	NA	0	44	10	43
P-0058881-T02-IM7	SOMATIC	MGA	MGA	15	15	42058191	42425466	Intron of MGA(+):10bp before exon 24	IGR: 8Kb before PLA2G4F(-)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.7922-11:MGA_chr15:g.42425466inv	PRECISE		MANUAL_OK	5to5	-	367275	NA	0	24	10	24
P-0058939-T02-IM7	SOMATIC	MSH2	MSH2	2	2	47662359	215170312	Intron of MSH2(+):5Kb after exon 7	Intron of SPAG16(+):105Kb before exon 16	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.1276+5279:MSH2_chr2:g.215170312inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	167507953	NA	0	17	10	17
P-0059067-T02-IM7	SOMATIC	WT1	EWSR1	22	11	29684537	32426133	Intron of EWSR1(+):57bp before exon 9	Intron of WT1(-):5Kb before exon 6	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32426133::chr22:g.29684537)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {WT1:EWSR1}	0	NA	0	56	10	78
P-0059238-T02-IM7	SOMATIC	FGFR2	WAC	10	10	28901530	123242066	Intron of WAC(+):679bp after exon 10	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - WAC (NM_016628) fusion: c.2301+1146:FGFR2_c.1437+679:WACinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:WAC}	94340536	NA	0	40	10	42
P-0059791-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39908871	42867678	Intron of ERG(-):39Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1173:TMPRSS2_c.39+38715:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2958807	NA	0	71	10	72
P-0060342-T02-IM7	SOMATIC	CSDE1	CSDE1	1	1	115263337	115266503	Exon 18 of CSDE1(-)	Exon 17 of CSDE1(-)	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.2011+1_c.2013del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3166	NA	0	4	8	4
P-0060407-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864188	42872597	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2481:TMPRSS2_c.18+6099:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008409	NA	0	29	10	30
P-0060461-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29683178	32417553	Intron of EWSR1(+):55bp after exon 8	Intron of WT1(-):249bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417553::chr22:g.29683178)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	99	10	109
P-0060581-T01-IM7	SOMATIC	CDKN2B	CDKN2A	9	9	21968384	22008168	Intron of CDKN2A(-):143bp before exon 3	Intron of CDKN2B(-):628bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) - CDKN2A (NM_000077) rearrangement: c.156+629:CDKN2B_c.458-143:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CDKN2B:CDKN2A}	39784	NA	0	5	9	5
P-0060676-T01-IM7	SOMATIC	PARP1	NUP210L	1	1	154083076	226595348	Intron of NUP210L(-):6Kb before exon 13	Intron of PARP1(-):162bp after exon 1	GRCh37	DELETION	PARP1 (NM_001618) - NUP210L (NM_207308) rearrangement: c.120+163:PARP1_c.1621-6390:NUP210Ldel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PARP1:NUP210L}	72512272	NA	0	20	10	20
P-0060676-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	187826862	246078944	IGR: 765Kb before LINC01036(+)	Intron of SMYD3(-):2bp before exon 8	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.703-2:SMYD3_chr1:g.187826862del	PRECISE		MANUAL_OK	3to5	-	58252082	NA	0	16	10	18
P-0060676-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39846686	42867913	Intron of ERG(-):24Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1408:TMPRSS2_c.18+23601:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3021227	NA	0	34	10	36
P-0060677-T01-IM7	SOMATIC	RAB35	RAB35	12	12	120541845	120561034	Intron of RAB35(-):92bp before exon 3	IGR: 4Kb before GCN1L1(-)	GRCh37	INVERSION	RAB35 (NM_006861) rearrangement: c.104-92:RAB35_chr12:g.120561034inv	PRECISE		MANUAL_OK	3to3	-	19189	NA	0	5	10	5
P-0060681-T01-IM7	SOMATIC	RPS6KB2	RPS6KB2	11	11	67201533	69858847	Intron of RPS6KB2(+):5bp after exon 11	IGR: 43Kb before LOC101928443(-)	GRCh37	DELETION	RPS6KB2 (NM_003952) rearrangement: c.969+5:RPS6KB2_chr11:g.69858847del	PRECISE		MANUAL_OK	3to5	-	2657314	NA	0	8	10	9
P-0060684-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42854578	42867024	Intron of TMPRSS2(-):2Kb before exon 6	Intron of TMPRSS2(-):519bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.127-519_c.557-2049inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	12446	NA	0	31	10	32
P-0060793-T01-IM7	SOMATIC	BRD4	NOTCH3	19	19	15289884	15381401	Exon 22 of NOTCH3(-)	Intron of BRD4(-):2Kb before exon 3	GRCh37	DELETION	BRD4 (NM_058243) - NOTCH3 (NM_000435) rearrangement: c.286-1548:BRD4_c.3670:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BRD4:NOTCH3}	91517	NA	0	101	10	106
P-0060793-T01-IM7	SOMATIC	PRCC	TFE3	X	1	48896824	156745885	Exon 3 of TFE3(-)	Intron of PRCC(+):6Kb before exon 2	GRCh37	TRANSLOCATION	PRCC (NM_005973) - TFE3 (NM_006521) rearrangement: t(1;X)(q23.1;p11.23)(chr1:g.156745885::chrX:g.48896824)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRCC:TFE3}	0	NA	0	57	10	55
P-0060794-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55190048	55222533	Intron of EGFR(+):20Kb before exon 2	Intron of EGFR(+):688bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-19931_c.889+688del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	32485	NA	0	74	10	122
P-0060794-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55195682	55222535	Intron of EGFR(+):14Kb before exon 2	Intron of EGFR(+):690bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-14297_c.889+690del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	26853	NA	0	149	0	240
P-0060794-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55200975	55221917	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):72bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-9004_c.889+72del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20942	NA	0	113	10	118
P-0060794-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55203305	55223171	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):351bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-6674_c.890-352del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	19866	NA	0	169	0	273
P-0060794-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268990	55870039	Exon 25 of EGFR(+)	Intron of SEPT14(-):3Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.3056:EGFR_chr7:g.55870039inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:SEPT14}	601049	NA	0	210	10	440
P-0060795-T01-IM7	SOMATIC	DDR2	DUSP27	1	1	162731548	167086603	Intron of DDR2(+):304bp after exon 9	Exon 3 of DUSP27(+)	GRCh37	DELETION	DDR2 (NM_006182) - DUSP27 (NM_001080426) rearrangement: c.1099+304:DDR2_c.244:DUSP27del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DDR2:DUSP27}	4355055	NA	0	11	7	10
P-0060804-T01-IM7	SOMATIC	DNMT3A	DNMT3A	3	2	156854481	25458438	IGR: 11Kb before CCNL1(-)	Intron of DNMT3A(-):137bp after exon 22	GRCh37	TRANSLOCATION	DNMT3A (NM_022552) rearrangement: t(2;3)(p23.3;q25.31)(chr2:g.25458438::chr3:g.156854481)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	43	10	45
P-0060805-T01-IM7	SOMATIC	BRD4	BRD4	19	19	13699020	15349704	IGR: 160Kb before CCDC130(+)	Exon 19 of BRD4(-)	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.3870:BRD4_chr19:g.13699020inv	PRECISE		MANUAL_OK	5to5	-	1650684	NA	0	4	8	4
P-0060805-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15284578	15341231	Intron of NOTCH3(-):300bp after exon 25	Intron of EPHX3(-):541bp after exon 4	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.4736+301:NOTCH3_chr19:g.15341231inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	56653	NA	0	6	10	7
P-0060805-T01-IM7	SOMATIC	GAB1	GAB1	4	4	144318625	144361458	Intron of GAB1(+):18Kb before exon 2	Exon 6 of GAB1(+)	GRCh37	DELETION	GAB1 (NM_207123) rearrangement: c.73-18005_c.1508del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	42833	NA	0	3	8	3
P-0060806-T01-IM7	SOMATIC	CCND1	CCND1	12	11	69739592	69457699	Promoter of LYZ(+):3Kb from tx start	Intron of CCND1(+):99bp before exon 2	GRCh37	TRANSLOCATION	CCND1 (NM_053056) rearrangement: t(11;12)(q13.3;q15)(chr11:g.69457699::chr12:g.69739592)	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {LYZ:CCND1}	0	NA	0	24	0	5
P-0060807-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	15973653	16003052	Exon 31 of NCOR1(-)	Intron of NCOR1(-):1Kb before exon 21	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.2691-1242_c.4339del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29399	NA	0	59	10	59
P-0060807-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42870977	43222194	Intron of TMPRSS2(-):861bp before exon 2	Intron of PRDM15(-):312bp before exon 25	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-861:TMPRSS2_chr21:g.43222194inv	PRECISE		MANUAL_OK	3to3	-	351217	NA	0	140	10	140
P-0060809-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3828815	3895451	Exon 9 of CREBBP(-)	Intron of CREBBP(-):5Kb after exon 2	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.798+4847_c.1827del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	66636	NA	0	3	6	3
P-0060817-T01-IM7	SOMATIC	BAP1	BAP1	3	2	52441531	222464424	Intron of BAP1(-):55bp before exon 6	IGR: 182Kb before EPHA4(-)	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(2;3)(q36.1;p21.1)(chr2:g.222464424::chr3:g.52441531)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	26	10	26
P-0060823-T01-IM7	SOMATIC	PGBD5	PGBD5	1	1	230472848	230625972	Intron of PGBD5(-):5bp after exon 4	IGR: 152Kb before COG2(+)	GRCh37	DELETION	PGBD5 (NM_001258311.1) rearrangement: c.1075+6_chr1:g.230625972del	PRECISE		MANUAL_OK	3to5	-	153124	NA	0	29	10	32
P-0060824-T01-IM7	SOMATIC	TSC1	AK8	9	9	135688693	135778141	Intron of AK8(-):1Kb after exon 10	Exon 18 of TSC1(-)	GRCh37	DELETION	TSC1 (NM_000368) - AK8 (NM_152572) rearrangement: c.2242:TSC1_c.979+1332:AK8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TSC1:AK8}	89448	NA	0	30	10	34
P-0060828-T01-IM7	SOMATIC	MPL	MPL	1	1	40927229	43804051	Intron of ZFP69B(+):863bp before exon 5	Intron of MPL(+):149bp after exon 2	GRCh37	DUPLICATION	MPL (NM_005373) rearrangement: c.212+149:MPL_chr1:g.40927229dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MPL:ZFP69B}	2876822	NA	0	20	10	25
P-0060828-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10265433	46639788	Exon 20 of DNMT1(-)	IGR: 11Kb before IGFL2(+)	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.1613:DNMT1_chr19:g.46639788inv	PRECISE		MANUAL_OK	3to3	-	36374355	NA	0	6	10	6
P-0060830-T01-IM7	SOMATIC	AXIN2	AXIN2	17	17	63527607	63534433	Intron of AXIN2(-):1Kb before exon 11	Exon 5 of AXIN2(-)	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.1088_c.2406-1387del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6826	NA	0	10	10	10
P-0060831-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739843	1808827	Intron of TACC3(+):414bp after exon 10	Intron of FGFR3(+):15bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-16:FGFR3_c.1941+414:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68984	NA	0	50	10	51
P-0060843-T01-IM7	SOMATIC	BRIP1	KCNH5	17	14	59761103	63397642	Exon 20 of BRIP1(-)	Intron of KCNH5(-):19Kb after exon 7	GRCh37	TRANSLOCATION	BRIP1 (NM_032043) - KCNH5 (NM_139318) rearrangement: t(14;17)(q23.2;q23.2)(chr14:g.63397642::chr17:g.59761103)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRIP1:KCNH5}	0	NA	0	6	0	6
P-0060845-T01-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101904647	101905611	Intron of TGFBR1(+):170bp before exon 5	Intron of TGFBR1(+):626bp after exon 5	GRCh37	INVERSION	TGFBR1 (NM_004612) rearrangement: c.806-171_c.973+626inv	PRECISE		MANUAL_OK	5to5	-	964	NA	0	10	10	10
P-0060847-T01-IM7	SOMATIC	MDC1	RREB1	6	6	7224681	30679857	Intron of RREB1(+):2Kb before exon 9	Exon 5 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) - RREB1 (NM_001003699) rearrangement: c.1862:MDC1_c.708-2019:RREB1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MDC1:RREB1}	23455176	NA	0	2	10	2
P-0060849-T01-IM7	SOMATIC	TET2	TET2	4	4	106153884	106158049	5-UTR of TET2(+):1Kb before coding start	Exon 3 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.2950:TET2_chr4:g.106153884del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4165	NA	0	34	10	34
P-0060859-T01-IM7	SOMATIC	ARID5B	ARID5B	10	10	63851388	63872376	Exon 10 of ARID5B(+)	IGR: 63Kb before ARID5B(+)	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.2166:ARID5B_chr10:g.63872376dup	PRECISE		MANUAL_OK	5to3	-	20988	NA	0	5	7	5
P-0060859-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55227577	55234656	Intron of EGFR(+):254bp before exon 12	Intron of EGFR(+):2Kb after exon 15	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.1299-255_c.1880+1526dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : in frame	7079	NA	0	5	10	11
P-0060865-T01-IM7	SOMATIC	PLK2	PDE4D	5	5	57754264	58429052	Exon 4 of PLK2(-)	Intron of PDE4D(-):47Kb after exon 7	GRCh37	DUPLICATION	PLK2 (NM_006622) - PDE4D (NM_001104631) rearrangement: c.587:PLK2_c.808+47369:PDE4Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLK2:PDE4D}	674788	NA	0	5	7	5
P-0060870-T01-IM7	SOMATIC	ETV6	AEBP2	12	12	12025073	19623670	Intron of ETV6(+):2Kb after exon 5	Intron of AEBP2(+):3Kb before exon 3	GRCh37	DELETION	ETV6 (NM_001987) - AEBP2 (NM_001114176) rearrangement: c.1009+2170:ETV6_c.880-2512:AEBP2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ETV6:AEBP2}	7598597	NA	0	6	0	6
P-0060877-T01-IM7	SOMATIC	POLE	POLE	12	12	133245154	133302023	Intron of POLE(-):66bp after exon 18	Promoter of PGAM5(+):15Kb from tx start	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.2027-66:POLE_chr12:g.133302023del	PRECISE		MANUAL_OK	3to5	-	56869	NA	0	5	9	5
P-0060877-T01-IM7	SOMATIC	LOC102467146	FH	16	1	79754421	241661260	Promoter of LOC102467146(-):787bp from tx start	Exon 10 of FH(-)	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;16)(q43;q23.2)(chr1:g.241661260::chr16:g.79754421)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LOC102467146:FH}	0	NA	0	21	10	24
P-0060879-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1741188	1808945	Intron of TACC3(+):240bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2377:FGFR3_c.1942-241:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67757	NA	0	91	10	97
P-0060890-T01-IM7	SOMATIC	MITF	MITF	3	3	69987487	70697089	Intron of MITF(+):287bp after exon 2	IGR: 307Kb before FOXP1(-)	GRCh37	DELETION	MITF (NM_198159) rearrangement: c.582+287:MITF_chr3:g.70697089del	PRECISE		MANUAL_OK	3to5	-	709602	NA	0	16	10	16
P-0060891-T01-IM7	SOMATIC	NOTCH4	NOTCH4	11	6	43398700	32189035	Intron of TTC17(+):2Kb before exon 2	Exon 4 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;11)(p21.32;p12)(chr6:g.32189035::chr11:g.43398700)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	19	10	26
P-0060891-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89350673	89360416	Exon 9 of ANKRD11(-)	Intron of ANKRD11(-):3Kb before exon 5	GRCh37	DUPLICATION	ANKRD11 (NM_013275) rearrangement: c.227-2825_c.2277dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9743	NA	0	18	10	18
P-0060891-T01-IM7	SOMATIC	PLCG2	PLCG2	16	9	81892836	107130219	Intron of PLCG2(+):68bp after exon 5	IGR: 136Kb before OR13F1(+)	GRCh37	TRANSLOCATION	PLCG2 (NM_002661) rearrangement: t(9;16)(q31.1;q23.3)(chr9:g.107130219::chr16:g.81892836)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	71	10	74
P-0060891-T01-IM7	SOMATIC	NOTCH4	NOTCH4	8	6	107362830	32190829	5-UTR of OXR1(+):9Kb before coding start	Exon 2 of NOTCH4(-)	GRCh37	TRANSLOCATION	NOTCH4 (NM_004557) rearrangement: t(6;8)(p21.32;q23.1)(chr6:g.32190829::chr8:g.107362830)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	34	10	35
P-0060891-T01-IM7	SOMATIC	PPARG	PPARG	9	3	97124378	12475550	Promoter of LOC100132077(+):30Kb from tx start	Exon 7 of PPARG(+)	GRCh37	TRANSLOCATION	PPARG (NM_015869) rearrangement: t(3;9)(p25.2;q22.32)(chr3:g.12475550::chr9:g.97124378)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LOC100132077:PPARG}	0	NA	0	12	10	16
P-0060903-T01-IM7	SOMATIC	BCL2L1	BCL2L1	20	20	30253888	30309457	Exon 3 of BCL2L1(-)	Exon 2 of BCL2L1(-)	GRCh37	DELETION	BCL2L1 (NM_138578) rearrangement: c.564+1_c.566del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	55569	NA	0	14	10	14
P-0060907-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	19	42876201	51385322	Intron of TMPRSS2(-):4Kb after exon 1	Promoter of KLK2(+):9Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.33;q22.3)(chr19:g.51385322::chr21:g.42876201)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	44	10	44
P-0060913-T01-IM7	SOMATIC	ITGAM	CREBBP	16	16	3818034	31329271	Intron of CREBBP(-):124bp before exon 16	Intron of ITGAM(+):3Kb before exon 15	GRCh37	INVERSION	ITGAM (NM_001145808) - CREBBP (NM_004380) rearrangement: c.1711-3291:ITGAM_c.3061-124:CREBBPinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ITGAM:CREBBP}	27511237	NA	0	12	0	12
P-0060913-T01-IM7	SOMATIC	MET	MET	7	7	77134059	116403079	IGR: 33Kb before PTPN12(+)	Intron of MET(+):24bp before exon 11	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2365-25:MET_chr7:g.77134059del	PRECISE		MANUAL_OK	3to5	-	39269020	NA	0	58	10	58
P-0060914-T01-IM7	SOMATIC	KDR	KDR	7	4	133604504	55980952	Intron of EXOC4(+):2Kb after exon 13	Intron of KDR(-):88bp after exon 5	GRCh37	TRANSLOCATION	KDR (NM_002253) rearrangement: t(4;7)(q12;q33)(chr4:g.55980952::chr7:g.133604504)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	32	10	32
P-0060918-T01-IM7	SOMATIC	WHSC1	WHSC1	4	4	1901176	1902946	5-UTR of WHSC1(+):1Kb before coding start	Exon 2 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.565:WHSC1_chr4:g.1901176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1770	NA	0	10	10	10
P-0049278-T01-IM7	SOMATIC	PIK3R1	PIK3R1	17	5	54888975	67591941	Intron of C17orf67(-):3Kb after exon 6	Intron of PIK3R1(+):57bp before exon 15	GRCh37	TRANSLOCATION	PIK3R1 (NM_181523) rearrangement: t(5;17)(q13.1;q22)(chr5:g.67591941::chr17:g.54888975)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	23
P-0049278-T01-IM7	SOMATIC	MALT1	MALT1	18	18	55822125	56415026	Intron of NEDD4L(+):11Kb before exon 2	Exon 17 of MALT1(+)	GRCh37	INVERSION	MALT1 (NM_006785) rearrangement: c.2427:MALT1_chr18:g.55822125inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	592901	NA	0	35	10	34
P-0060765-T02-IM7	SOMATIC	NCOA4	RET	10	10	43611844	51584168	Intron of RET(+):187bp before exon 12	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.2137-188:RET_c.763-448NCOA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7972324	NA	0	64	10	68
P-0060860-T01-IM7	SOMATIC	NF1	NF1	17	17	29487656	34850557	Intron of NF1(+):2Kb after exon 3	Intron of ZNHIT3(+):707bp after exon 4	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.288+1545:NF1_chr17:g.34850557inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5362901	NA	0	11	10	11
P-0060860-T01-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4123753	4160504	Intron of MAP2K2(-):27bp after exon 1	Intron of CREB3L3(+):725bp after exon 4	GRCh37	DELETION	MAP2K2 (NM_030662) rearrangement: c.92+28:MAP2K2_chr19:g.4160504del	PRECISE		MANUAL_OK	3to5	-	36751	NA	0	20	10	23
P-0060881-T02-IM7	SOMATIC	MGA	MGA	15	15	42054558	42187662	Exon 22 of MGA(+)	Promoter of SPTBN5(-):47Kb from tx start	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.7742:MGA_chr15:g.42187662del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	133104	NA	0	13	10	14
P-0060881-T02-IM7	SOMATIC	PLK2	PLK2	5	5	57751216	155190178	Exon 12 of PLK2(-)	IGR: 564Kb before SGCD(+)	GRCh37	INVERSION	PLK2 (NM_006622) rearrangement: c.1651:PLK2_chr5:g.155190178inv	PRECISE		MANUAL_OK	3to3	-	97438962	NA	0	13	10	13
P-0060931-T01-IM7	SOMATIC	BRCA1	GPATCH8	17	17	41256836	42490488	Intron of BRCA1(-):48bp after exon 5	Intron of GPATCH8(-):7Kb before exon 7	GRCh37	DUPLICATION	BRCA1 (NM_007294) - GPATCH8 (NM_001002909) rearrangement: c.301+49:BRCA1_c.493-7069:GPATCH8dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BRCA1:GPATCH8}	1233652	NA	0	22	10	22
P-0060976-T01-IM7	SOMATIC	TP53	TP53	17	1	7579349	223218404	Exon 4 of TP53(-)	IGR: 64Kb before TLR5(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(1;17)(q41;p13.1)(chr1:g.223218404::chr17:g.7579349)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	32	10	39
P-0060704-T02-IM7	SOMATIC	PMS2	PMS2	7	7	6017844	6786203	Intron of PMS2(-):382bp after exon 13	5-UTR of PMS2CL(+):5Kb before coding start	GRCh37	INVERSION	PMS2 (NM_000535) rearrangement: c.2275+383:PMS2_chr7:g.6786203inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PMS2CL:PMS2}	768359	NA	2	5	10	24
P-0060748-T02-IM7	SOMATIC	KIF5B	RET	10	10	32314268	43611527	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):504bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2304:KIF5B_c.2137-505:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297259	NA	0	30	10	32
P-0060960-T01-IM7	SOMATIC	KMT2B	KMT2B	19	19	36214754	58006166	Exon 8 of KMT2B(+)	Promoter of ZNF419(+):7Kb from tx start	GRCh37	DELETION	KMT2B (NM_014727) rearrangement: c.3180:KMT2B_chr19:g.58006166del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2B:ZNF419}	21791412	NA	0	8	10	9
P-0060968-T01-IM7	SOMATIC	SDHA	SDHA	5	5	251746	4948860	Intron of SDHA(+):163bp after exon 13	IGR: 86Kb before LINC01020(+)	GRCh37	DUPLICATION	SDHA (NM_004168) rearrangement: c.1794+163:SDHA_chr5:g.4948860dup	PRECISE		MANUAL_OK	5to3	-	4697114	NA	0	5	10	16
P-0042157-T06-IM7	SOMATIC	DNAJC17	SMARCE1	17	15	38788427	41082474	Intron of SMARCE1(-):19bp after exon 8	Intron of DNAJC17(-):10Kb before exon 2	GRCh37	TRANSLOCATION	DNAJC17 (NM_018163) - SMARCE1 (NM_003079) rearrangement: t(15;17)(p15.1;q21.2)(chr15:g.41082474 ::chr17:g.38788427 )	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJC17:SMARCE1}	0	NA	0	23	0	25
P-0042157-T06-IM7	SOMATIC	STK11	STK11	19	19	1129738	1220988	Intron of SBNO2(-):2Kb before exon 5	Intron of STK11(+):223bp before exon 6	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.735-224:STK11_chr19:g.1129738del	PRECISE		MANUAL_OK	3to5	-	91250	NA	0	21	10	21
P-0042157-T06-IM7	SOMATIC	FGFR3	TACC3	4	4	1740506	1808855	Intron of TACC3(+):922bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2287:FGFR3_c.1942-923:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68349	NA	0	241	10	269
P-0035162-T07-IM7	SOMATIC	POLD1	POLD1	19	19	50904797	50905760	Intron of POLD1(+):237bp before exon 4	Exon 7 of POLD1(+)	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.317-238_c.808inv	PRECISE		MANUAL_OK	5to5	-	963	NA	0	6	10	6
P-0035812-T03-IM7	SOMATIC	RCAN1	RUNX1	21	21	35914262	36165019	Intron of RCAN1(-):18Kb before exon 2	Intron of RUNX1(-):112bp before exon 9	GRCh37	DUPLICATION	RCAN1 (NM_004414) - RUNX1 (NM_001754) rearrangement: c.253-18254:RCAN1_c.968-112:RUNX1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RCAN1:RUNX1}	250757	NA	0	54	10	56
P-0035812-T03-IM7	SOMATIC	DROSHA	ADAMTS12	5	5	31472068	33530930	Intron of DROSHA(-):101bp after exon 16	Intron of ADAMTS12(-):3Kb before exon 24	GRCh37	DUPLICATION	DROSHA (NM_013235) - ADAMTS12 (NM_030955) rearrangement: c.2241+102:DROSHA_c.4607-3459:ADAMTS12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DROSHA:ADAMTS12}	2058862	NA	0	57	10	58
P-0038824-T02-IM7	SOMATIC	DDR2	DDR2	1	1	162741436	162742143	Intron of DDR2(+):377bp before exon 13	Intron of DDR2(+):106bp after exon 13	GRCh37	DUPLICATION	DDR2 (NM_006182) rearrangement: c.1505-378_c.1728+106dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	707	NA	0	101	10	104
P-0039980-T03-IM7	SOMATIC	TFE3	TFE3	X	X	48894338	73121591	Intron of TFE3(-):1Kb after exon 5	IGR: 43Kb before JPX(+)	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.885+1197:TFE3_chrX:g.73121591inv	IMPPRECISE		MANUAL_OK	5to5	-	24227253	NA	0	14	0	15
P-0046176-T02-IM7	SOMATIC	PTP4A1	PTP4A1	6	6	57503766	64288706	Intron of PRIM2(+):5Kb after exon 13	Intron of PTP4A1(+):96bp before exon 4	GRCh37	INVERSION	PTP4A1 (NM_003463) rearrangement: c.199-97:PTP4A1_chr6:g.57503766inv	PRECISE		MANUAL_OK	5to5	-	6784940	NA	0	32	10	51
P-0046176-T02-IM7	SOMATIC	ARID1B	ARID1B	6	6	62086050	157522402	IGR: 198Kb before MTRNR2L9(+)	Exon 18 of ARID1B(+)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.4674:ARID1B_chr6:g.62086050inv	PRECISE		MANUAL_OK	5to5	-	95436352	NA	0	28	10	104
P-0050988-T03-IM7	SOMATIC	KEAP1	KEAP1	19	19	10600442	53113817	Exon 4 of KEAP1(-)	Promoter of ZNF83(-):2Kb from tx start	GRCh37	DUPLICATION	KEAP1 (NM_203500) rearrangement: c.1413:KEAP1_chr19:g.53113817dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KEAP1:ZNF83}	42513375	NA	0	15	10	15
P-0058883-T02-IM7	SOMATIC	NOTCH2	NOTCH2	X	1	27225332	120510244	IGR: 253Kb before SMEK3P(-)	Exon 8 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;X)(p12;p21.3)(chr1:g.120510244::chrX:g.27225332)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	8	7
P-0058925-T02-IM7	SOMATIC	NOTCH2	NOTCH2	4	1	57364313	120480571	Intron of SRP72(+):2Kb before exon 18	Exon 20 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q12)(chr1:g.120480571::chr4:g.57364313)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	5
P-0059013-T02-IM7	SOMATIC	PRKD1	PRKD1	14	14	23924047	30068259	IGR: 15Kb before NGDN(+)	Exon 15 of PRKD1(-)	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.2140:PRKD1_chr14:g.23924047del	PRECISE		MANUAL_OK	3to5	-	6144212	NA	0	15	10	15
P-0059781-T02-IM7	SOMATIC	E2F3	E2F3	6	6	16100317	20402648	IGR: 29Kb before MYLIP(+)	Exon 1 of E2F3(+)	GRCh37	DELETION	E2F3 (NM_001949) rearrangement: c.185:E2F3_chr6:g.16100317del	PRECISE		MANUAL_OK	3to5	-	4302331	NA	0	25	10	26
P-0059855-T02-IM7	SOMATIC	PTEN	PTEN	10	10	89653000	89653787	Intron of PTEN(+):781bp before exon 2	Exon 2 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-782_c.85del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	787	NA	93	52	8	7
P-0059855-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865680	42877029	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+2848:TMPRSS2_c.18+4607:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3011349	NA	0	14	10	15
P-0060905-T01-IM7	SOMATIC	RB1	RB1	13	13	43707025	48953798	5-UTR of LINC00400(+):27Kb before coding start	Intron of RB1(+):12bp after exon 14	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1389+12:RB1_chr13:g.43707025inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5246773	NA	0	59	10	59
P-0060905-T01-IM7	SOMATIC	TOP1	TOP1	20	20	33774692	39706154	IGR: 15Kb before PROCR(+)	Intron of TOP1(+):67bp before exon 5	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.280-68:TOP1_chr20:g.33774692del	PRECISE		MANUAL_OK	3to5	-	5931462	NA	0	36	10	38
P-0060947-T01-IM7	SOMATIC	SETD2	SETD2	X	3	153387238	47059310	IGR: 22Kb before OPN1LW(+)	Intron of SETD2(-):81bp before exon 20	GRCh37	TRANSLOCATION	SETD2 (NM_014159) rearrangement: t(3;X)(p21.31;q28)(chr3:g.47059310::chrX:g.153387238)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	39	10	39
P-0060948-T01-IM7	SOMATIC	FGF3	FGF3	18	11	2531360	69627567	IGR: 6Kb before METTL4(-)	Intron of FGF3(-):2Kb before exon 3	GRCh37	TRANSLOCATION	FGF3 (NM_005247) rearrangement: t(11;18)(q13.3;p11.32)(chr11:g.69627567::chr18:g.2531360)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	27	10	27
P-0060948-T01-IM7	SOMATIC	DDR2	DDR2	4	1	14973900	162689020	3-UTR of CPEB2-AS1(-):30Kb after coding stop	Intron of DDR2(+):85bp after exon 3	GRCh37	TRANSLOCATION	DDR2 (NM_006182) rearrangement: t(1;4)(q23.3;p15.33)(chr1:g.162689020::chr4:g.14973900)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	16	0	16
P-0060951-T01-IM7	SOMATIC	KDM5A	KDM5A	12	12	427387	429504	Exon 19 of KDM5A(-)	Intron of KDM5A(-):656bp after exon 18	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.2541+657_c.2782inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2117	NA	0	69	10	86
P-0060953-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52604889	52620682	Intron of PBRM1(-):6Kb after exon 23	Exon 21 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.3071_c.3616+5668dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15793	NA	0	9	0	9
P-0060956-T01-IM7	SOMATIC	JUN	JUN	1	1	59247880	60381054	Exon 1 of JUN(-)	Intron of CYP2J2(-):555bp after exon 2	GRCh37	INVERSION	JUN (NM_002228) rearrangement: c.863:JUN_chr1:g.60381054inv	PRECISE		MANUAL_OK	3to3	-	1133174	NA	0	2	6	2
P-0061045-T01-IM7	SOMATIC	TERT	TERT	5	5	1295576	44223972	Promoter of TERT(-):42Kb from tx start	IGR: 81Kb before FGF10(-)	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-472:TERT_chr5:g.44223972inv	PRECISE		MANUAL_OK	3to3	-	42928396	NA	0	59	10	59
P-0061049-T01-IM7	SOMATIC	NBN	NBN	8	8	71332456	90955515	IGR: 51Kb before LOC101926892(+)	Exon 14 of NBN(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.2150:NBN_chr8:g.71332456inv	PRECISE		MANUAL_OK	5to5	-	19623059	NA	0	5	8	5
P-0061063-T02-IM7	SOMATIC	TP53	TP53	17	17	7576390	7577044	Intron of TP53(-):462bp after exon 9	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.894_c.993+463del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	654	NA	0	11	10	13
P-0061160-T01-IM7	SOMATIC	SPRED1	SPRED1	15	15	38591731	40064132	Exon 2 of SPRED1(+)	Intron of FSIP1(-):1Kb before exon 3	GRCh37	DELETION	SPRED1 (NM_152594) rearrangement: c.190:SPRED1_chr15:g.40064132del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1472401	NA	0	2	7	2
P-0061160-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	15964864	16285442	Exon 37 of NCOR1(-)	Exon 2 of UBB(+)	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.5732:NCOR1_chr17:g.16285442del	PRECISE		MANUAL_OK	3to5	-	320578	NA	0	3	10	9
P-0061160-T01-IM7	SOMATIC	ERF	ERF	19	7	42759142	142989101	Exon 1 of ERF(-)	Intron of CASP2(+):291bp before exon 3	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(7;19)(q34;q13.2)(chr7:g.142989101::chr19:g.42759142)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	26	10	28
P-0061160-T01-IM7	SOMATIC	NBN	NBN	8	8	90767600	90990380	3-UTR of LOC101929709(-):2Kb after coding stop	Intron of NBN(-):67bp after exon 5	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.584+68:NBN_chr8:g.90767600del	PRECISE		MANUAL_OK	3to5	-	222780	NA	0	9	10	9
P-0061164-T01-IM7	SOMATIC	EWSR1	CREB3L1	22	11	29687784	46332230	Intron of EWSR1(+):196bp after exon 10	Intron of CREB3L1(+):352bp before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46332230::chr22:g.29687784)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB3L1}	0	NA	0	30	10	30
P-0061165-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39805215	42875509	Intron of ERG(-):10Kb before exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4368:TMPRSS2_c.237-9732:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3070294	NA	0	33	10	35
P-0061227-T01-IM7	SOMATIC	RAD51B	RAD51B	14	14	53726304	68290609	IGR: 106Kb before LOC101927620(+)	Intron of RAD51B(+):265bp after exon 2	GRCh37	INVERSION	RAD51B (NM_133509) rearrangement: c.84+265:RAD51B_chr14:g.53726304inv	PRECISE		MANUAL_OK	3to3	-	14564305	NA	0	15	10	12
P-0061229-T01-IM7	SOMATIC	IRS2	IRS2	13	1	110435012	163460888	Exon 1 of IRS2(-)	IGR: 70Kb before LOC100422212(-)	GRCh37	TRANSLOCATION	IRS2 (NM_003749) rearrangement: t(1;13)(q23.3;q34)(chr1:g.163460888::chr13:g.110435012)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	167	10	179
P-0016031-T02-IM7	SOMATIC	POLE	POLE	20	12	16628486	133209351	IGR: 82Kb before SNRPB2(+)	Exon 44 of POLE(-)	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(12;20)(q24.33;p12.1)(chr12:g.133209351::chr20:g.16628486)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	58	10	64
P-0016031-T02-IM7	SOMATIC	TERT	TERT	X	5	6997700	1295519	Intron of HDHD1(-):2Kb before exon 3	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;X)(q15.33;p22.31)(chr5:g.1295519::chrX:g.6997700)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {HDHD1:TERT}	0	NA	0	104	10	108
P-0028963-T01-IM7	SOMATIC	ERBB4	ERBB4	2	2	212251642	212290315	Exon 27 of ERBB4(-)	Intron of ERBB4(-):1Kb before exon 23	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.2720-1289_c.3417dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	38673	NA	0	40	10	48
P-0032683-T02-IM7	SOMATIC	EML4	ALK	2	2	29447763	42526259	Intron of ALK(-):563bp after exon 19	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2122:EML4_c.3172+564:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078496	NA	0	61	10	60
P-0058014-T02-IM7	SOMATIC	FGFR1	LETM2	8	8	38263879	38273543	Intron of LETM2(+):584bp before exon 9	Exon 14 of FGFR1(-)	GRCh37	INVERSION	FGFR1 (NM_001174067) - LETM2 (NM_001199659) rearrangement: c.1792:FGFR1_c.1078-585:LETM2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FGFR1:LETM2}	9664	NA	0	11	10	17
P-0058179-T02-IM7	SOMATIC	GATA3	GATA3	10	2	8111498	213909241	Exon 5 of GATA3(+)	Intron of IKZF2(-):5Kb after exon 5	GRCh37	TRANSLOCATION	GATA3 (NM_002051) rearrangement: t(2;10)(q34;p14)(chr2:g.213909241::chr10:g.8111498)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	7
P-0060495-T01-IM7	SOMATIC	RB1	RB1	13	13	48878260	48885691	Intron of RB1(+):75bp after exon 1	Intron of RB1(+):4Kb after exon 2	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.137+75_c.264+4149del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	7431	NA	0	11	0	11
P-0060881-T03-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098949	178102327	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-3328_c.96del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3378	NA	0	53	10	59
P-0061063-T01-IM7	SOMATIC	TP53	TP53	17	17	7576390	7577044	Intron of TP53(-):462bp after exon 9	Exon 8 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.894_c.993+463del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	654	NA	0	80	10	101
P-0061066-T01-IM7	SOMATIC	TP53	TP53	17	17	7578256	7586666	Exon 6 of TP53(-)	5-UTR of TP53(-):14Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.593:TP53_chr17:g.7586666del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8410	NA	0	80	10	105
P-0061128-T01-IM7	SOMATIC	EP300	EP300	22	22	41556648	41559881	Exon 20 of EP300(+)	Intron of EP300(+):175bp before exon 22	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3593_c.3729-176del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3233	NA	0	50	10	52
P-0061144-T01-IM7	SOMATIC	FLT1	FLT1	13	13	28901645	28932852	Exon 20 of FLT1(-)	Intron of FLT1(-):1Kb before exon 15	GRCh37	INVERSION	FLT1 (NM_002019) rearrangement: c.2117-1030_c.2750inv	PRECISE		MANUAL_OK	3to3	-	31207	NA	0	22	10	22
P-0061147-T01-IM7	SOMATIC	ERBB2	ERBB2	17	17	37698853	37883441	IGR: 61Kb before NEUROD2(-)	Intron of ERBB2(+):106bp before exon 26	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3160-107:ERBB2_chr17:g.37698853del	PRECISE		MANUAL_OK	3to5	-	184588	NA	0	3	10	4
P-0061148-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47020709	47038744	Intron of RBM10(+):8Kb before exon 3	Exon 9 of RBM10(+)	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.213-8005_c.946del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18035	NA	0	28	10	27
P-0061206-T01-IM7	SOMATIC	TP53	TP53	17	17	7576659	7588578	Intron of TP53(-):193bp after exon 9	5-UTR of TP53(-):16Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.993+194:TP53_chr17:g.7588578dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	11919	NA	0	79	10	88
P-0061211-T01-IM7	SOMATIC	PTP4A1	PTP4A1	6	1	64288888	102233770	Exon 4 of PTP4A1(+)	IGR: 34Kb before OLFM3(-)	GRCh37	TRANSLOCATION	PTP4A1 (NM_003463) rearrangement: t(1;6)(p21.1;q12)(chr1:g.102233770::chr6:g.64288888)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	29	10	29
P-0061213-T01-IM7	SOMATIC	PGR	PGR	11	11	100920704	100942830	Exon 6 of PGR(-)	Intron of PGR(-):9Kb before exon 4	GRCh37	DELETION	PGR (NM_000926) rearrangement: c.1907-9347_c.2444del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22126	NA	0	7	10	10
P-0059521-T02-IM7	SOMATIC	CYLD	CYLD	16	16	50820680	50821731	Intron of CYLD(+):85bp before exon 12	Exon 13 of CYLD(+)	GRCh37	INVERSION	CYLD (NM_001042355) rearrangement: c.1941-86_c.2067inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1051	NA	0	11	10	13
P-0059521-T02-IM7	SOMATIC	TP53	TP53	17	1	7578099	205197351	Intron of TP53(-):77bp after exon 6	5-UTR of TMCC2(+):341bp before coding start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(1;17)(q32.1;p13.1)(chr1:g.205197351::chr17:g.7578099)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {TMCC2:TP53}	0	NA	0	11	10	11
P-0060520-T01-IM7	SOMATIC	CDKN1B	CDKN1B	12	12	12870986	12874616	Exon 1 of CDKN1B(+)	3-UTR of CDKN1B(+):4Kb after coding stop	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.213:CDKN1B_chr12:g.12874616del	PRECISE		MANUAL_OK	3to5	-	3630	NA	0	60	10	64
P-0060520-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39844157	42875063	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4814:TMPRSS2_c.18+26130:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3030906	NA	0	56	10	61
P-0060556-T01-IM7	SOMATIC	CREBBP	CREBBP	16	9	3820900	102162748	Exon 14 of CREBBP(-)	IGR: 45Kb before NAMA(-)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(9;16)(q22.33;p13.3)(chr9:g.102162748::chr16:g.3820900)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	10	41
P-0060556-T01-IM7	SOMATIC	NOTCH1	NOTCH1	19	9	34296033	139395287	Intron of KCTD15(+):2Kb before exon 5	Exon 31 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;19)(q34.3;q13.11)(chr9:g.139395287::chr19:g.34296033)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	35	10	34
P-0061153-T01-IM7	SOMATIC	ARID1A	S100PBP	1	1	27106826	33308668	Exon 20 of ARID1A(+)	Intron of S100PBP(+):10Kb before exon 6	GRCh37	DELETION	ARID1A (NM_006015) - S100PBP (NM_022753) rearrangement: c.6437:ARID1A_c.1025-10012:S100PBPdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:S100PBP}	6201842	NA	0	5	10	5
P-0061153-T01-IM7	SOMATIC	NEGR1	NEGR1	1	1	71873122	71876983	3-UTR of NEGR1(-):6bp after coding stop	Intron of NEGR1(-):4Kb before exon 7	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.941-3730:NEGR1_chr1:g.71873122del	PRECISE		MANUAL_OK	3to5	-	3861	NA	0	10	10	10
P-0061256-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39829778	42873557	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3441:TMPRSS2_c.19-12234:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3043779	NA	0	34	10	36
P-0061264-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	30297812	42868819	Promoter of LTN1(-):3Kb from tx start	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.126+1227:TMPRSS2_chr21:g.30297812inv	IMPPRECISE		MANUAL_OK	3to3	-	12571007	NA	0	6	0	6
P-0061264-T01-IM7	SOMATIC	AR	AR	X	X	66936959	66943403	Intron of AR(+):360bp before exon 5	Intron of AR(+):124bp before exon 8	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-361_c.2608-125del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	6444	NA	0	5	0	5
P-0061265-T01-IM7	SOMATIC	ETV6	NTRK3	15	12	88554122	12033175	Intron of NTRK3(-):22Kb after exon 14	Intron of ETV6(+):4Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12033175::chr15:g.88554122)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	38	10	37
P-0061267-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89692849	89710770	Exon 5 of PTEN(+)	Intron of PTEN(+):1Kb before exon 6	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.333_c.493-1105del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17921	NA	0	15	0	18
P-0061268-T01-IM7	SOMATIC	C2CD2	TMPRSS2	21	21	42867076	43366377	Intron of TMPRSS2(-):571bp before exon 3	Intron of C2CD2(-):4Kb before exon 2	GRCh37	DELETION	C2CD2 (NM_015500) - TMPRSS2 (NM_001135099) rearrangement: c.280-4023:C2CD2_c.127-571:TMPRSS2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {C2CD2:TMPRSS2}	499301	NA	0	4	6	4
P-0060872-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39876850	42873713	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-59306:ERG_c.56-3597:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2996863	NA	0	69	10	70
P-0005813-T07-IM7	SOMATIC	NF1	NF1	17	17	29676862	29687515	Intron of NF1(+):338bp before exon 49	Exon 56 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.7322-339_c.8171inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	10653	NA	0	4	5	4
P-0023957-T04-IM7	SOMATIC	BRCA2	BRCA2	13	13	32912007	32916293	Exon 11 of BRCA2(+)	Intron of BRCA2(+):960bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.3515_c.6841+960del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4286	NA	0	15	0	108
P-0030387-T02-IM7	SOMATIC	NKX2	NKX2-1	14	14	36987343	36989667	Intron of NKX2-1(-):118bp before exon 3	Promoter of NKX2-1(-):4Kb from tx start	GRCh37	DELETION	NKX2-1 (NM_001079668) rearrangement: c.464-118:NKX2-1_chr14:g.36989667del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2324	NA	0	12	10	13
P-0031710-T02-IM7	SOMATIC	MPL	FAF1	1	1	43815119	51229991	Intron of MPL(+):89bp after exon 10	Intron of FAF1(-):20Kb before exon 5	GRCh37	INVERSION	MPL (NM_005373) - FAF1 (NM_007051) rearrangement: c.1565+89:MPL_c.368-19544:FAF1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MPL:FAF1}	7414872	NA	0	9	10	9
P-0031710-T02-IM7	SOMATIC	LDLR	SMARCA4	19	19	11136045	11202508	Intron of SMARCA4(+):52bp before exon 22	Intron of LDLR(+):2Kb after exon 1	GRCh37	DUPLICATION	LDLR (NM_000527) - SMARCA4 (NM_003072) rearrangement: c.67+2217:LDLR_c.3082-53:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LDLR:SMARCA4}	66463	NA	0	36	10	36
P-0060326-T02-IM7	SOMATIC	KDR	KDR	4	1	55971883	175275018	Intron of KDR(-):115bp after exon 12	IGR: 17Kb before TNR(-)	GRCh37	TRANSLOCATION	KDR (NM_002253) rearrangement: t(1;4)(q25.1;q12)(chr1:g.175275018::chr4:g.55971883)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	16	10	17
P-0061060-T01-IM7	SOMATIC	NF2	NF2	22	22	30069610	45191055	Intron of NF2(+):135bp after exon 12	Intron of ARHGAP8(+):7Kb before exon 3	GRCh37	INVERSION	NF2 (NM_000268) rearrangement: c.1340+135:NF2_chr22:g.45191055inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15121445	NA	0	34	10	34
P-0061197-T01-IM7	SOMATIC	BRIP1	BRIP1	17	17	59853605	59864806	Intron of BRIP1(-):156bp after exon 14	Intron of BRIP1(-):3Kb before exon 11	GRCh37	INVERSION	BRIP1 (NM_032043) rearrangement: c.1474-3021_c.2097+157inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11201	NA	0	55	10	56
P-0061205-T01-IM7	SOMATIC	ERBB2	ERBB2	17	17	37883640	37886063	Exon 26 of ERBB2(+)	Promoter of ERBB2(+):30Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3252:ERBB2_chr17:g.37886063del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2423	NA	0	3	4	3
P-0061243-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55190095	55223322	Intron of EGFR(+):20Kb before exon 2	Intron of EGFR(+):200bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-19884_c.890-201del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	33227	NA	0	179	10	973
P-0061243-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268918	55271314	Exon 25 of EGFR(+)	Intron of EGFR(+):996bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2984_c.3271+996del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2396	NA	0	17	10	17
P-0061245-T01-IM7	SOMATIC	EGFR	SEPT14	7	7	55268815	55869978	Intron of EGFR(+):65bp before exon 25	Intron of SEPT14(-):3Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) rearrangement: c.2947-66:EGFR_c.1119+2973:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	601163	NA	0	130	10	375
P-0016244-T03-IM7	SOMATIC	BRD4	BRD4	21	19	25706468	15350666	IGR: 30Kb before LOC101927869(-)	Intron of BRD4(-):34bp before exon 16	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(19;21)(p13.12;q21.2)(chr19:g.15350666::chr21:g.25706468)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	50	10	50
P-0019303-T05-IM7	SOMATIC	STAT5B	STAT5B	17	17	37367870	40359544	3-UTR of STAC2(-):674bp after coding stop	Intron of STAT5B(-):31bp after exon 16	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement: c.2077+32:STAT5B_chr17:g.37367870inv	PRECISE		MANUAL_OK	5to5	-	2991674	NA	0	16	10	16
P-0035844-T03-IM7	SOMATIC	KIAA1549	BRAF	7	7	138567532	140493285	Intron of KIAA1549(-):1Kb before exon 11	Intron of BRAF(-):822bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4033-1202:KIAA1549_c.1140+823:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1925753	NA	0	48	10	49
P-0059857-T02-IM7	SOMATIC	CCDC6	RET	10	10	43611615	61604308	Intron of RET(+):416bp before exon 12	Intron of CCDC6(-):8Kb after exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.453+8003:CCDC6_c.2137-417:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	17992693	NA	0	97	10	104
P-0060656-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39848625	42876652	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3225:TMPRSS2_c.18+21662:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3028027	NA	0	93	10	99
P-0061142-T02-IM7	SOMATIC	C11orf88	SDHD	11	11	111386986	111965502	Intron of C11orf88(+):151bp after exon 3	Intron of SDHD(+):26bp before exon 4	GRCh37	DELETION	C11orf88 (NM_207430) - SDHD (NM_003002) rearrangement: c.339+151:C11orf88_c.315-27:SDHDdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {C11orf88:SDHD}	578516	NA	0	5	10	6
P-0061179-T01-IM7	SOMATIC	MSH3	TERT	5	5	1295691	80126471	Promoter of TERT(-):42Kb from tx start	Intron of MSH3(+):17Kb after exon 20	GRCh37	INVERSION	MSH3 (NM_002439)  - TERT (NM_198253) rearrangement: c.2813+16911:MSH3_c.-587:TERTinv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MSH3:TERT}	78830780	NA	0	103	10	103
P-0061179-T02-IM7	SOMATIC	MSH3	TERT	5	5	1295691	80126471	Promoter of TERT(-):42Kb from tx start	Intron of MSH3(+):17Kb after exon 20	GRCh37	INVERSION	MSH3 (NM_002439)  - TERT (NM_198253) rearrangement: c.2813+16911:MSH3_c.-587:TERTinv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MSH3:TERT}	78830780	NA	0	12	10	12
P-0061181-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21973735	21975325	Intron of CDKN2A(-):3Kb before exon 2	Intron of CDKN2A(-):4Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-4118_c.194-2528del	PRECISE		MANUAL_OK	3to5	Deletion within intron	1590	NA	0	20	10	22
P-0061328-T01-IM7	SOMATIC	TERT	FBXL7	5	5	1295342	15925952	Promoter of TERT(-):42Kb from tx start	Intron of FBXL7(+):2Kb before exon 3	GRCh37	DELETION	TERT (NM_198253) - FBXL7 (NM_012304) rearrangement: c.-238_c.128-2047del	PRECISE		MANUAL_OK	3to5	-	14630610	NA	0	57	10	60
P-0061330-T01-IM7	SOMATIC	MSH6	MSH6	4	2	35178140	48028292	IGR: 889Kb before ARAP2(-)	Exon 4 of MSH6(+)	GRCh37	TRANSLOCATION	MSH6 (NM_000179) rearrangement: t(2;4)(p16.3;p15.1)(chr2:g.48028292::chr4:g.35178140)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	15	10	15
P-0061331-T01-IM7	SOMATIC	KIF5B	RET	10	10	32311471	43610884	Intron of KIF5B(-):286bp before exon 17	Intron of RET(+):700bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1915-286:KIF5B_c.2136+700:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11299413	NA	0	20	10	20
P-0061336-T01-IM7	SOMATIC	BRIP1	MED13	17	17	59885960	60093015	Exon 7 of BRIP1(-)	Intron of MED13(-):4Kb before exon 9	GRCh37	DUPLICATION	BRIP1 (NM_032043) - MED13 (NM_005121) rearrangement: c.786:BRIP1_c.1284-4421:MED13dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRIP1:MED13}	207055	NA	0	70	10	75
P-0061336-T01-IM7	SOMATIC	RAD54L	RAD54L	7	1	73916892	46743770	5-UTR of GTF2IRD1(+):6Kb before coding start	Exon 19 of RAD54L(+)	GRCh37	TRANSLOCATION	RAD54L (NM_001142548) rearrangement: t(1;7)(p34.1;q11.23)(chr1:g.46743770::chr7:g.73916892)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GTF2IRD1:RAD54L}	0	NA	0	66	10	70
P-0061336-T01-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141456214	141559516	Intron of TRAPPC9(-):5Kb after exon 2	Intron of AGO2(-):119bp before exon 12	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.878+4675:TRAPPC9_c.1404-119:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TRAPPC9:AGO2}	103302	NA	0	28	10	29
P-0061352-T01-IM7	SOMATIC	FBXL17	APC	5	5	107525089	112111254	Intron of FBXL17(-):3Kb before exon 6	Intron of APC(+):71bp before exon 5	GRCh37	INVERSION	FBXL17 (NM_001163315) - APC (NM_000038) rearrangement: c.1615-3141:FBXL17_c.423-72:APCinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FBXL17:APC}	4586165	NA	0	7	10	7
P-0060952-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47636258	47643303	Intron of MSH2(+):564bp after exon 2	Intron of MSH2(+):131bp before exon 6	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.366+564_c.943-132del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	7045	NA	1	11	0	10
P-0061363-T01-IM7	SOMATIC	TMPRSS2	ETV5	21	3	42871463	185809171	Intron of TMPRSS2(-):1Kb before exon 2	Intron of ETV5(-):10Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV5 (NM_004454) fusion: t(3;21)(q27.2;q22.3)(chr3:g.185809171::chr21:g.42871463)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV5}	0	NA	0	81	10	81
P-0055449-T02-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098084	178099544	Intron of NFE2L2(-):17bp before exon 3	Intron of NFE2L2(-):545bp before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-545_c.313-17del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1460	NA	0	104	10	114
P-0056090-T02-IM7	SOMATIC	EWSR1	EWSR1	22	2	29683544	219850953	Intron of EWSR1(+):421bp after exon 8	Promoter of FEV(-):5Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(2;22)(q35;q12.2)(chr2:g.219850953::chr22:g.29683544)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:FEV}	0	NA	0	48	10	48
P-0061102-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39968040	42873584	3-UTR of ERG(-):66Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-3468:TMPRSS2_chr21:g.39968040del	PRECISE		MANUAL_OK	3to5	-	2905544	NA	0	15	10	15
P-0061390-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	123240792	123914054	Intron of FGFR2(-):1Kb before exon 18	Intron of TACC2(+):22Kb after exon 6	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-1257:FGFR2_chr10:g.123914054del	PRECISE		MANUAL_OK	3to5	-	673262	NA	0	13	10	13
P-0061394-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5218745	5229552	Intron of PTPRS(-):52bp after exon 24	Exon 15 of PTPRS(-)	GRCh37	DUPLICATION	PTPRS (NM_002850) rearrangement: c.2299_c.3935+53dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10807	NA	0	5	10	5
P-0061461-T01-IM7	SOMATIC	PDGFRA	PDGFRA	10	4	38213836	55143661	IGR: 25Kb before ZNF25(-)	Intron of PDGFRA(+):2bp after exon 13	GRCh37	TRANSLOCATION	PDGFRA (NM_006206) rearrangement: t(4;10)(q12;p11.1)(chr4:g.55143661::chr10:g.38213836)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	13	10	19
P-0061462-T01-IM7	SOMATIC	STK11	STK11	19	17	1221275	33451024	Exon 6 of STK11(+)	Intron of FNDC8(+):2Kb after exon 1	GRCh37	TRANSLOCATION	STK11 (NM_000455) rearrangement: t(17;19)(q12;p13.3)(chr17:g.33451024::chr19:g.1221275)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	47	10	52
P-0061467-T01-IM7	SOMATIC	AXIN1	AXIN1	16	16	329635	341125	Promoter of ARHGDIG(+):970bp from tx start	Intron of AXIN1(-):64bp after exon 9	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.2294+65:AXIN1_chr16:g.329635del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	11490	NA	0	16	10	17
P-0061467-T01-IM7	SOMATIC	STK11	STK11	19	19	1205775	1218362	Promoter of STK11(+):22bp from tx start	Intron of STK11(+):53bp before exon 2	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-54:STK11_chr19:g.1205775del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	12587	NA	0	22	10	22
P-0061473-T01-IM7	SOMATIC	WWTR1	WWTR1	3	3	149250476	149374867	Intron of WWTR1(-):5Kb before exon 5	Exon 2 of WWTR1(-)	GRCh37	INVERSION	WWTR1 (NM_001168280) rearrangement: c.227_c.772-4720inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	124391	NA	0	39	10	46
P-0034290-T02-IM7	SOMATIC	CEBPA	VPS13B	19	8	33792359	100382401	Exon 1 of CEBPA(-)	Intron of VPS13B(+):14Kb before exon 20	GRCh37	TRANSLOCATION	CEBPA (NM_004364) - VPS13B (NM_152564) rearrangement: t(8;19)(q22.2;q13.11)(chr8:g.100382401::chr19:g.33792359)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CEBPA:VPS13B}	0	NA	0	10	10	12
P-0034290-T02-IM7	SOMATIC	TRIP13	TRIP13	5	5	911935	1053557	Intron of TRIP13(+):22bp before exon 10	Exon 23 of SLC12A7(-)	GRCh37	DELETION	TRIP13 (NM_004237) rearrangement: c.867-23:TRIP13_chr5:g.1053557inv	PRECISE		MANUAL_OK	3to5	Antisense Fusion	141622	NA	0	9	10	9
P-0042261-T11-IM7	SOMATIC	PPP6C	PPP6C	9	9	127109808	127922948	Intron of NEK6(+):179bp before exon 10	Intron of PPP6C(-):171bp after exon 3	GRCh37	DELETION	PPP6C (NM_002721) rearrangement: c.237+172:PPP6C_chr9:g.127109808del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	813140	NA	0	16	10	16
P-0042857-T02-IM7	SOMATIC	ERBB2	ANKFN1	17	17	37876261	54352894	Intron of ERBB2(+):174bp after exon 16	Intron of ANKFN1(+):48Kb after exon 2	GRCh37	DELETION	ERBB2 (NM_004448) - ANKFN1 (NM_153228) rearrangement: c.1946+174:ERBB2_c.62+47576:ANKFN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ERBB2:ANKFN1}	16476633	NA	0	51	10	53
P-0042857-T02-IM7	SOMATIC	CDK12	CDK12	17	6	37649074	19614941	Exon 4 of CDK12(+)	IGR: 223Kb before ID4(+)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(6;17)(p22.3;q12)(chr6:g.19614941::chr17:g.37649074)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	20	10	20
P-0046209-T05-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72829177	72830180	Exon 9 of ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.6401_c.7404del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1003	NA	0	5	0	8
P-0046209-T05-IM7	SOMATIC	DNMT1	DNMT1	19	19	10261658	10262840	Intron of DNMT1(-):415bp after exon 23	Intron of DNMT1(-):317bp before exon 22	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1972-317_c.2217+416del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1182	NA	0	5	0	5
P-0056466-T03-IM7	SOMATIC	KDM6A	KDM6A	X	X	44731890	44733088	Promoter of KDM6A(+):530bp from tx start	Intron of KDM6A(+):81bp before exon 2	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.162-82:KDM6A_chrX:g.44731890del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1198	NA	0	25	10	25
P-0058230-T02-IM7	SOMATIC	NTRK3	DOT1L	19	15	2227604	88683244	Intron of DOT1L(+):478bp after exon 27	Intron of NTRK3(-):2Kb before exon 7	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) - DOT1L (NM_032482) rearrangement: t(15;19)(q25.3;p13.3)(chr15:g.88683244::chr19:g.2227604)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NTRK3:DOT1L}	0	NA	0	7	10	7
P-0060764-T02-IM7	SOMATIC	EWSR1	ETV4	22	17	29688484	41608244	Exon 12 of EWSR1(+)	Intron of ETV4(-):695bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ETV4 (NM_001986) fusion: t(17;22)(q21.31;q12.2)(chr17:g.41608244::chr22:g.29688484)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:ETV4}	0	NA	0	73	10	73
P-0061193-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46121099	46125044	Promoter of ARID2(+):3Kb from tx start	Exon 3 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.231:ARID2_chr12:g.46121099del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3945	NA	0	15	10	15
P-0061297-T02-IM7	SOMATIC	EML4	ALK	2	2	29448375	42523587	Exon 19 of ALK(-)	Intron of EML4(+):931bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+931:EML4_c.3124:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13075212	NA	0	2	5	2
P-0061406-T01-IM7	SOMATIC	RXRA	RFT1	9	3	137218506	53137425	Intron of RXRA(+):1bp after exon 1	Intron of RFT1(-):543bp after exon 10	GRCh37	TRANSLOCATION	RXRA (NM_002957) - RFT1 (NM_052859) rearrangement: t(3;9)(p21.1;q34.2)(chr3:g.53137425::chr9:g.137218506)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RXRA:RFT1}	0	NA	0	14	10	14
P-0061408-T01-IM7	SOMATIC	PRDM14	PRDM14	8	5	70980530	36986189	Exon 4 of PRDM14(-)	Exon 10 of NIPBL(+)	GRCh37	TRANSLOCATION	PRDM14 (NM_024504) rearrangement: t(5;8)(p13.2;q13.3)(chr5:g.36986189::chr8:g.70980530)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	5	9	4
P-0061420-T01-IM7	SOMATIC	IKBKE	IKBKE	1	1	74658969	206649854	5-UTR of LRRIQ3(-):166Kb before coding start	Intron of IKBKE(+):149bp after exon 6	GRCh37	DELETION	IKBKE (NM_014002) rearrangement: c.540+149:IKBKE_chr1:g.74658969del	PRECISE		MANUAL_OK	3to5	-	131990885	NA	0	8	10	9
P-0061420-T01-IM7	SOMATIC	DNMT1	RAVER1	19	19	10246782	10428287	Intron of DNMT1(-):14bp after exon 37	Intron of RAVER1(-):11bp before exon 13	GRCh37	DUPLICATION	DNMT1 (NM_001379) - RAVER1 (NM_133452) rearrangement: c.4608+15:DNMT1_c.2125-11:RAVER1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {DNMT1:RAVER1}	181505	NA	0	37	10	37
P-0061422-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865641	42867004	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):499bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-499:TMPRSS2_c.18+4646:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001363	NA	0	35	10	38
P-0061481-T01-IM7	SOMATIC	CARM1	DNM2	19	19	10891462	11015859	Intron of DNM2(+):2Kb before exon 6	Intron of CARM1(+):107bp after exon 2	GRCh37	DUPLICATION	CARM1 (NM_199141) - DNM2 (NM_001005361) rearrangement: c.346+107:CARM1_c.689-2174:DNM2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CARM1:DNM2}	124397	NA	0	13	10	14
P-0061481-T01-IM7	SOMATIC	DNMT3B	DNMT3B	20	15	31388526	40602907	Intron of DNMT3B(+):114bp before exon 18	Promoter of PLCB2(-):23Kb from tx start	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(15;20)(q15.1;q11.21)(chr15:g.40602907::chr20:g.31388526)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0061487-T01-IM7	SOMATIC	EPHA3	MAPK6	15	3	52346878	89391152	Intron of MAPK6(+):4Kb before exon 4	Exon 5 of EPHA3(+)	GRCh37	TRANSLOCATION	EPHA3 (NM_005233) - MAPK6 (NM_002748) rearrangement: t(3;15)(p11.1;q21.2)(chr3:g.89391152::chr15:g.52346878)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EPHA3:MAPK6}	0	NA	0	32	10	35
P-0061490-T01-IM7	SOMATIC	PMS2	PMS2	7	7	6029777	6718700	Intron of PMS2(-):191bp before exon 10	IGR: 9Kb before ZNF12(-)	GRCh37	DELETION	PMS2 (NM_000535) rearrangement: c.989-191:PMS2_chr7:g.6718700del	PRECISE		MANUAL_OK	3to5	-	688923	NA	0	3	10	4
P-0061507-T01-IM7	SOMATIC	NF1	NF1	17	17	29663394	33151892	Exon 40 of NF1(+)	IGR: 103Kb before CCT6B(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.6050:NF1_chr17:g.33151892del	PRECISE		MANUAL_OK	3to5	-	3488498	NA	0	12	10	13
P-0061513-T01-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	111881639	241357404	Exon 2 of BCL2L11(+)	IGR: 18Kb before GPC1(+)	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.317:BCL2L11_chr2:g.241357404del	PRECISE		MANUAL_OK	3to5	-	129475765	NA	0	36	10	38
P-0061520-T01-IM7	SOMATIC	GNAS	GNAS	20	20	2632568	57484795	Promoter of NOP56(+):609bp from tx start	Exon 10 of GNAS(+)	GRCh37	DELETION	GNAS (NM_000516) rearrangement: c.775:GNAS_chr20:g.2632568del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOP56:GNAS}	54852227	NA	0	20	10	24
P-0061526-T01-IM7	SOMATIC	DOT1L	DOT1L	19	9	2217622	130367147	Intron of DOT1L(+):148bp before exon 22	IGR: 7Kb before STXBP1(+)	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(9;19)(q34.11;p13.3)(chr9:g.130367147::chr19:g.2217622)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	9
P-0061526-T01-IM7	SOMATIC	FGFR4	FGFR4	5	4	176519604	43485219	Intron of FGFR4(+):42bp before exon 8	IGR: 590Kb before GRXCR1(+)	GRCh37	TRANSLOCATION	FGFR4 (NM_213647) rearrangement: t(4;5)(p13;q35.2)(chr4:g.43485219::chr5:g.176519604)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	10
P-0061562-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872497	42867077	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):572bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-572:TMPRSS2_chr21:g.39872497del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2994580	NA	0	19	10	19
P-0061562-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71008361	71023840	3-UTR of FOXP1(-):36bp after coding stop	Intron of FOXP1(-):2Kb before exon 14	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1531-2013:FOXP1_chr3:g.71008361del	PRECISE		MANUAL_OK	3to5	-	15479	NA	0	7	10	7
P-0061575-T01-IM7	SOMATIC	ERCC4	ERCC4	16	12	14014175	26447220	Exon 1 of ERCC4(+)	IGR: 41Kb before ITPR2(-)	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) rearrangement: t(12;16)(p12.1;p13.12)(chr12:g.26447220::chr16:g.14014175)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	36	10	35
P-0061575-T01-IM7	SOMATIC	SUZ12	SUZ12	17	12	30321133	18950318	Intron of SUZ12(+):106bp after exon 12	IGR: 59Kb before CAPZA3(+)	GRCh37	TRANSLOCATION	SUZ12 (NM_015355) rearrangement: t(12;17)(p12.3;q11.2)(chr12:g.18950318::chr17:g.30321133)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0061582-T01-IM7	SOMATIC	OSBP2	SMO	22	7	31210894	128851610	Intron of OSBP2(+):56Kb before exon 3	Exon 11 of SMO(+)	GRCh37	TRANSLOCATION	OSBP2 (NM_030758) - SMO (NM_005631) rearrangement: t(7;22)(q32.1;q12.2)(chr7:g.128851610::chr22:g.31210894)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {OSBP2:SMO}	0	NA	0	14	10	14
P-0061582-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139413037	139448549	Intron of NOTCH1(-):5bp after exon 6	IGR: 6Kb before LINC01573(+)	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.1099+6:NOTCH1_chr9:g.139448549inv	PRECISE		MANUAL_OK	5to5	-	35512	NA	0	19	10	25
P-0061584-T01-IM7	SOMATIC	INHA	INHA	14	2	58048857	220437240	Intron of SLC35F4(-):706bp before exon 4	Exon 1 of INHA(+)	GRCh37	TRANSLOCATION	INHA (NM_002191) rearrangement: t(2;14)(q35;q22.3)(chr2:g.220437240::chr14:g.58048857)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	41	10	41
P-0061591-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68835877	68843166	Intron of CDH1(+):81bp after exon 3	Intron of CDH1(+):415bp after exon 5	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.387+81_c.687+415del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	7289	NA	0	64	10	80
P-0061595-T01-IM7	SOMATIC	RB1	RB1	13	13	48878291	48909489	Intron of RB1(+):106bp after exon 1	Intron of RB1(+):7Kb before exon 3	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.137+106_c.265-7246del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	31198	NA	0	8	9	8
P-0061595-T01-IM7	SOMATIC	B2M	B2M	15	15	45007900	45009803	Intron of B2M(+):1bp after exon 2	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346+1:B2M_chr15:g.45009803del	IMPPRECISE		MANUAL_OK	3to5	-	1903	NA	0	6	0	6
P-0061595-T01-IM7	SOMATIC	ERF	ERF	19	11	42752674	47905824	Exon 4 of ERF(-)	IGR: 96Kb before PTPRJ(+)	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(11;19)(p11.2;q13.2)(chr11:g.47905824::chr19:g.42752674)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	26	10	29
P-0061596-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27105122	27106239	Intron of ARID1A(+):391bp before exon 20	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.5125-392_c.5850del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1117	NA	0	77	10	83
P-0061603-T01-IM7	SOMATIC	MSI2	MSI2	17	17	50205703	55704592	Intron of CA10(-):29Kb after exon 1	Exon 10 of MSI2(+)	GRCh37	DELETION	MSI2 (NM_138962) rearrangement: c.655:MSI2_chr17:g.50205703del	PRECISE		MANUAL_OK	3to5	-	5498889	NA	0	15	10	15
P-0061614-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157384141	157522195	Intron of ARID1B(+):22Kb before exon 6	Exon 18 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2038-21655_c.4467del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	138054	NA	0	48	10	53
P-0061622-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48592566	48593497	Intron of SMAD4(+):590bp after exon 9	Exon 10 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1139+590_c.1248del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	931	NA	0	6	0	6
P-0061622-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42870930	42883008	Intron of TMPRSS2(-):814bp before exon 2	Promoter of TMPRSS2(-):47Kb from tx start	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-814:TMPRSS2_chr21:g.42883008del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	12078	NA	0	16	10	21
P-0061625-T01-IM7	SOMATIC	TCF3	TCF3	19	19	1547601	1615626	IGR: 7Kb before MEX3D(-)	Intron of TCF3(-):58bp after exon 16	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1586+59:TCF3_chr19:g.1547601del	IMPPRECISE		MANUAL_OK	3to5	-	68025	NA	0	14	0	14
P-0004735-T02-IM6	SOMATIC	ROS1	ROS1	6	2	117654060	45653008	Intron of ROS1(-):3Kb before exon 32	Intron of SRBD1(-):6Kb before exon 17	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(2;6)(p21;q22.1)(chr2:g.45653008::chr6:g.117654060)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	14	9	14
P-0005428-T02-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	3	42874722	186488282	Intron of TMPRSS2(-):5Kb before exon 2	IGR: 13Kb before EIF4A2(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) Rearrangement : t(3;21)(q27.3;q22.3)(chr3:g.186488282::chr21:g.42874720)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	30	10	43
P-0006532-T01-IM5	SOMATIC	SMO	AHCYL2	7	7	128846510	128909626	Intron of SMO(+): 82bp after exon 6	Intron of AHCYL2(+): 44Kb after exon 1	GRCh37	DELETION	SMO (NM_005631) - AHCYL2 (NM_015328) rearrangement : c.1264+82:SMO_c.363+44346:AHCYL2del	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (SMO-AHCYL2)	63116	NA	0	12	20	11
P-0014026-T01-IM5	SOMATIC	APC	REEP5	5	5	112175655	112230071	Exon 16 of APC(+)	Intron of REEP5(-): 7Kb before exon 4	GRCh37	DELETION	APC(NM_000038) - REEP5(NM_005669)  rearrangement: c.4364:APC_c.352-7191:REEP5del	PRECISE		MANUAL_OK	3to5	Antisense fusion	54416	NA	0	86	103	84
P-0015673-T02-IM6	SOMATIC	TMPRSS2	ERG	21	21	39851634	42868022	Intron of ERG(-):19Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.127-1517:TMPRSS2_c.18+18653:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3016388	NA	0	8	10	8
P-0017479-T02-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9865765	9892220	Intron of GRIN2A(-):3Kb before exon 12	Exon 11 of GRIN2A(-)	GRCh37	DUPLICATION	GRIN2A (NM_001134407) Rearrangement: c.2270_c.2357-2819dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	26455	NA	0	58	10	59
P-0019448-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29687109	51190862	Intron of EWSR1(+):444bp before exon 10	Intron of ATF1(+):1Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion (EWSR1 exons 1-9 fused to ATF1 exons 4-7): t(12;22)(q13.12;q12.2)(chr12:g.51190862::chr22:g.9687109)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	39	10	40
P-0021977-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57488822	58436839	3-UTR of NAB2(+):6Kb after coding stop	IGR: 101Kb before XRCC6BP1(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.*318_chr12:g.58436839inv	PRECISE		MANUAL_OK	3to3	-	948017	NA	0	35	10	35
P-0024513-T01-IM6	SOMATIC	APC	APC	5	5	112102978	113610357	Exon 4 of APC(+)	IGR: 88Kb before KCNN2(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.313:APC_chr5:g.113610357del	PRECISE		MANUAL_OK	3to5	-	1507379	NA	0	5	10	5
P-0024634-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15302967	15335283	Exon 4 of NOTCH3(-)	Promoter of EPHX3(-):2Kb from tx start	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.483:NOTCH3_chr19:g.15335283inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	32316	NA	0	215	10	313
P-0029239-T03-IM6	SOMATIC	CTCF	CTCF	16	16	67644920	68049929	Exon 3 of CTCF(+)	Promoter of LOC100131303(-):3Kb from tx start	GRCh37	DUPLICATION	CTCF (NM_006565) rearrangement: c.185:CTCF_chr16:g.68049929dup	PRECISE		MANUAL_OK	5to3	-	405009	NA	0	3	10	3
P-0029239-T03-IM6	SOMATIC	AKT2	AKT2	19	19	40762835	43496167	Exon 3 of AKT2(-)	IGR: 16Kb before PSG11(-)	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.173:AKT2_chr19:g.43496167inv	IMPPRECISE		MANUAL_OK	5to5	-	2733332	NA	0	8	0	9
P-0029336-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32907285	51658908	Exon 10 of BRCA2(+)	3-UTR of LINC00371(-):87Kb after coding stop	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.1670_chr13:g.51658908	PRECISE		MANUAL_OK	3to3	-	18751623	NA	0	38	10	38
P-0029585-T01-IM6	SOMATIC	CREBBP	CREBBP	16	16	3619041	3842003	3-UTR of NLRC3(-):8Kb after coding stop	Exon 5 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.1309:CREBBP_chr16:g.3619041del	PRECISE		MANUAL_OK	3to5	-	222962	NA	0	9	8	9
P-0032092-T01-IM6	SOMATIC	TRAIP	MST1R	3	3	49883958	49936227	Intron of TRAIP(-):999bp after exon 3	Intron of MST1R(-):72bp after exon 3	GRCh37	DUPLICATION	TRAIP (NM_005879) - MST1R (NM_002447) rearrangement: c.240+1000:TRAIP_c.1548+73:MST1Rdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TRAIP:MST1R}	52269	NA	0	5	6	5
P-0032097-T01-IM6	SOMATIC	RB1	RB1	13	13	48878237	55149784	Intron of RB1(+):52bp after exon 1	IGR: 264Kb before MIR1297(-)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.137+52:RB1_chr13:g.55149784inv	PRECISE		MANUAL_OK	3to3	-	6271547	NA	1	84	10	83
P-0032097-T01-IM6	SOMATIC	DICER1	DLGAP5	14	14	55654343	95590827	Intron of DLGAP5(-):1Kb after exon 2	Exon 10 of DICER1(-)	GRCh37	DELETION	DICER1 (NM_030621) - DLGAP5 (NM_014750) rearrangement: c.1082:DICER1_c.238+1317:DLGAP5del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DICER1:DLGAP5}	39936484	NA	0	77	0	106
P-0032336-T01-IM6	SOMATIC	EP300	EP300	22	16	41574417	30001065	Exon 31 of EP300(+)	Exon 17 of TAOK2(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) Rearrangement: t(16;22)(p11.2;q13.2)(chr16:g.30001065::chr22:g.41574417)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	90	10	101
P-0032336-T01-IM6	SOMATIC	HIST1H3D	HIST1H3E	6	6	26197072	26227720	Exon 2 of HIST1H3D(-)	Promoter of HIST1H3E(+):2Kb from tx start	GRCh37	DELETION	HIST1H3D(NM_003530) - HIST1H3E(NM_003532) Rearrangement: c.407:HIST1H3D_c.*1927:HIST1H3Edel	PRECISE		MANUAL_OK	3to5	-	30648	NA	0	4	10	4
P-0032342-T01-IM6	SOMATIC	DROSHA	DROSHA	5	5	30226624	31422898	IGR: 846Kb before LOC101929681(-)	Exon 28 of DROSHA(-)	GRCh37	INVERSION	DROSHA(NM_013235) Rearrangement: c.3415:DROSHA_chr5:g.30226624inv	PRECISE		MANUAL_OK	5to5	-	1196274	NA	0	65	10	93
P-0032342-T01-IM6	SOMATIC	PDCD1LG2	PTPRD	9	9	5557764	10225278	Intron of PDCD1LG2(+):12bp after exon 5	5-UTR of PTPRD(-):2Mb before coding start	GRCh37	DELETION	PDCD1LG2(NM_025239) - PTPRD(NM_002839) Rearrangement: c.766+12:PDCD1LG2_c.-545+115685:PTPRDdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4667514	NA	0	80	10	87
P-0032474-T01-IM6	SOMATIC	GLI1	TP53	17	12	7585528	57865144	5-UTR of TP53(-):13Kb before coding start	Exon 12 of GLI1(+)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) - TP53 (NM_000546) Rearrangement : t(12;17)(p32.1;q12)(chr12:g.57865144::chr17:g.7585528)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GLI1:TP53}	0	NA	0	183	10	199
P-0033710-T01-IM6	SOMATIC	JAK1	JAK1	1	1	65300897	69521361	Intron of JAK1(-):181bp after exon 24	IGR: 559Kb before DEPDC1-AS1(+)	GRCh37	INVERSION	JAK1 (NM_002227) rearrangement: c.3369+182:JAK1_chr1:g.69521361inv	PRECISE		MANUAL_OK	5to5	-	4220464	NA	0	6	10	6
P-0034184-T01-IM6	SOMATIC	TECR	PIK3R2	19	19	14644609	18276951	Intron of TECR(+):4Kb after exon 1	Intron of PIK3R2(+):18bp before exon 12	GRCh37	INVERSION	TECR (NM_138501) - PIK3R2 (NM_005027) rearrangement: c.15+4086:TECR_c.1417-19:PIK3R2inv	PRECISE		MANUAL_OK	5to5	-	3632342	NA	0	29	10	34
P-0034184-T01-IM6	SOMATIC	ATP8A1	KDR	4	4	42627386	55987391	Intron of ATP8A1(-):244bp after exon 3	Intron of KDR(-):34bp before exon 2	GRCh37	DUPLICATION	ATP8A1 (NM_006095) - KDR (NM_002253) rearrangement: c.264+245:ATP8A1_c.68-34:KDRdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ATP8A1:KDR}	13360005	NA	0	71	0	80
P-0035162-T08-IM7	SOMATIC	POLD1	POLD1	19	19	50904797	50905760	Intron of POLD1(+):237bp before exon 4	Exon 7 of POLD1(+)	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.317-238_c.808inv	PRECISE		MANUAL_OK	5to5	-	963	NA	0	20	10	26
P-0036358-T01-IM6	SOMATIC	FGFR2	TACC2	10	10	123239743	123975434	Intron of FGFR2(-):208bp before exon 18	Intron of TACC2(+):468bp after exon 9	GRCh37	INVERSION	FGFR2 (NM_000141) - TACC2 (NM_206862) fusion: c.2302-208:FGFR2_c.7344+468:TACC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:TACC2}	735691	NA	0	23	10	29
P-0037044-T01-IM6	SOMATIC	NTRK3	NTRK3	15	3	88476548	192212899	Intron of NTRK3(-):133bp before exon 16	Intron of FGF12(-):135Kb before exon 3	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(3;15)(q28;q25.3)(chr3:g.192212899::chr15:g.88476548)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	37	10	42
P-0037044-T01-IM6	SOMATIC	CARD11	CARD11	15	7	95532040	2983615	IGR: 133Kb before LOC440311(+)	Intron of CARD11(-):230bp after exon 5	GRCh37	TRANSLOCATION	CARD11 (NM_032415) rearrangement: t(7;15)(p22.2;q26.2)(chr7:g.2983615::chr15:g.95532040)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0037044-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	15978905	26701849	Exon 27 of NCOR1(-)	Intron of SARM1(+):2Kb after exon 2	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.3613:NCOR1_chr17:g.26701849del	PRECISE		MANUAL_OK	3to5	-	10722944	NA	0	49	10	51
P-0037087-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	11	67199275	67201883	Intron of RPS6KB2(+):289bp after exon 5	Exon 13 of RPS6KB2(+)	GRCh37	DELETION	RPS6KB2 (NM_003952) Rearrangement : c.457+289_c.1083del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2608	NA	0	22	10	22
P-0037087-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	30948425	30956976	Intron of ASXL1(+):2Kb after exon 1	Intron of ASXL1(+):50bp after exon 3	GRCh37	DUPLICATION	ASXL1 (NM_015338) Rearrangement: c.57+1790_c.252+50dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	8551	NA	0	8	0	8
P-0037097-T01-IM6	SOMATIC	CCND1	GAB2	11	11	69457831	78123968	Exon 2 of CCND1(+)	Intron of GAB2(-):5Kb after exon 1	GRCh37	INVERSION	CCND1 (NM_053056) - GAB2 (NM_080491) rearrangement: c.231:CCND1_c.75+4724:GAB2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CCND1:GAB2}	8666137	NA	0	5	10	5
P-0037097-T01-IM6	SOMATIC	RECQL	PIK3C2G	12	12	18752563	21639314	Intron of PIK3C2G(+):5Kb after exon 29	Intron of RECQL(-):98bp after exon 6	GRCh37	INVERSION	RECQL (NM_032941) - PIK3C2G (NM_004570) rearrangement: c.501+99:RECQL_c.3964+5060:PIK3C2Ginv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RECQL:PIK3C2G}	2886751	NA	0	7	10	7
P-0037102-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	115426290	123240551	Promoter of NRAP(-):78Kb from tx start	Intron of FGFR2(-):1Kb before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-1016:FGFR2_chr10:g.115426290del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FGFR2:NRAP}	7814261	NA	0	41	10	43
P-0037126-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739309	1808878	Intron of TACC3(+):15bp before exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2310:FGFR3_c.1837-16:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69569	NA	0	20	10	21
P-0037160-T01-IM6	SOMATIC	KRAS	KRAS	12	12	25362792	25374734	3-UTR of KRAS(-):6Kb after coding stop	Intron of KRAS(-):4Kb after exon 4	GRCh37	DUPLICATION	KRAS (NM_033360) Rearrangement: c.450+3814_c.*58dup	PRECISE		MANUAL_OK	5to3	-	11942	NA	0	7	10	7
P-0037175-T01-IM6	SOMATIC	GDPD1	SPOP	17	17	47696463	57328812	Exon 5 of SPOP(-)	Intron of GDPD1(+):3Kb after exon 4	GRCh37	INVERSION	GDPD1 (NM_1825690) - SPOP (NM_001007228) rearrangement: c.367+2666:GDPD1_c.360:SPOPinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GDPD1:SPOP}	9632349	NA	0	18	10	20
P-0037180-T01-IM6	SOMATIC	PLEKHA7	RPS6KA4	11	11	16948616	64128995	Intron of PLEKHA7(-):56Kb before exon 4	Exon 6 of RPS6KA4(+)	GRCh37	INVERSION	PLEKHA7 (NM_175058) - RPS6KA4 (NM_003942) rearrangement: c.222-55887:PLEKHA7_c.625:RPS6KA4inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PLEKHA7:RPS6KA4}	47180379	NA	0	6	0	7
P-0037180-T01-IM6	SOMATIC	PARK2	PARK2	6	6	162683713	162856726	Exon 3 of PARK2(-)	Intron of PARK2(-):8Kb after exon 2	GRCh37	DELETION	PARK2 (NM_004562) rearrangement: c.171+7616_c.256del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	173013	NA	0	20	10	20
P-0037180-T01-IM6	SOMATIC	RECQL4	CPSF1	8	8	145626911	145738498	Exon 4 of CPSF1(-)	Exon 16 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) - CPSF1 (NM_013291) rearrangement: c.2487:RECQL4_c.219:CPSF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RECQL4:CPSF1}	111587	NA	0	45	10	46
P-0037182-T02-IM6	SOMATIC	EWSR1	EWSR1	22	5	29683808	150468147	Intron of EWSR1(+):685bp after exon 8	Promoter of TNIP1(-):59Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) Rearrangement : t(5;22)(q32.1;q12.2)(chr5:g.150468147::chr22:g.29683808)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	173	10	184
P-0037224-T01-IM6	SOMATIC	None	None	19	2	13051147	20918446	Exon 5 of CALR(+)	Intron of C2orf43(-):17Kb before exon 6	GRCh37	TRANSLOCATION	None	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	38	10	39
P-0037253-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	38975633	49952642	Intron of RICTOR(-):5bp after exon 10	IGR: 9Kb before PARP8(+)	GRCh37	DELETION	RICTOR (NM_152756) rearrangement: c.889+6:RICTOR_chr5:g.49952642del	PRECISE		MANUAL_OK	3to5	-	10977009	NA	0	13	10	13
P-0037257-T01-IM6	SOMATIC	RRAS	RRAS	19	19	50143298	50572777	Exon 1 of RRAS(-)	Promoter of FLJ26850(+):19Kb from tx start	GRCh37	DELETION	RRAS (NM_006270) rearrangement: c.58:RRAS_chr19:g.50572777del	IMPPRECISE		MANUAL_OK	3to5	-	429479	NA	0	5	0	5
P-0037263-T01-IM6	SOMATIC	DICER1	DICER1	15	14	35039509	95572446	IGR: 5Kb before GJD2(-)	Exon 20 of DICER1(-)	GRCh37	TRANSLOCATION	DICER1 (NM_030621) rearrangement: t(14;15)(q32.13;q14)(chr14:g.95572446::chr15:g.35039509)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	25	10	24
P-0037283-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39823481	42872457	Intron of ERG(-):6Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon 1 fused to ERG exons 2-10): c.56-2450:TMPRSS2_c.19-5937:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3048976	NA	0	15	10	17
P-0037384-T01-IM6	SOMATIC	MEI1	EP300	22	22	41564555	42122327	Exon 24 of EP300(+)	Intron of MEI1(+):2Kb after exon 7	GRCh37	DUPLICATION	MEI1 (NM_152513) - EP300 (NM_001429) rearrangement: c.864+2250:MEI1_c.3977:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MEI1:EP300}	557772	NA	0	75	10	77
P-0037545-T01-IM6	SOMATIC	PPP6C	PPP6C	10	9	111892246	127951728	Intron of ADD3(+):837bp before exon 14	Intron of PPP6C(-):194bp after exon 1	GRCh37	TRANSLOCATION	PPP6C (NM_002721) rearrangement: t(9;10)(q33.3;q25.3)(chr9:g.127951728::chr10:g.111892246)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	8	10	8
P-0037545-T01-IM6	SOMATIC	EYA1	WHSC1L1	8	8	38205068	72205772	Exon 2 of WHSC1L1(-)	Intron of EYA1(-):6Kb after exon 9	GRCh37	DELETION	EYA1 (NM_172058) - WHSC1L1 (NM_023034) rearrangement: c.826+5510:EYA1_c.622:WHSC1L1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EYA1:WHSC1L1}	34000704	NA	0	38	10	46
P-0037548-T01-IM6	SOMATIC	BCOR	BCOR	X	8	39930104	66508332	Intron of BCOR(-):121bp after exon 6	IGR: 6Kb before ARMC1(-)	GRCh37	TRANSLOCATION	BCOR (NM_001123385) rearrangement: t(X;8)(p11.4;q13.1)(chrX:g.39930104::chr8:g.66508332)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	21	10	22
P-0037834-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10267093	53065226	Exon 17 of DNMT1(-)	IGR: 8Kb before ZNF701(+)	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1325:DNMT1_chr19:g.53065226del	PRECISE		MANUAL_OK	3to5	-	42798133	NA	0	5	10	5
P-0037834-T01-IM6	SOMATIC	NPAS1	BBC3	19	19	47535039	47727316	Intron of NPAS1(+):496bp before exon 3	Intron of BBC3(-):2Kb before exon 4	GRCh37	INVERSION	NPAS1 (NM_002517) - BBC3 (NM_001127240) rearrangement: c.359-497:NPAS1_c.569-2141:BBC3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NPAS1:BBC3}	192277	NA	0	21	10	24
P-0037834-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44761938	44950141	Intron of KDM6A(+):29Kb after exon 2	Intron of KDM6A(+):32bp after exon 26	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.225+28705_c.3878+32dup	PRECISE		MANUAL_OK	5to3	Duplication of 24 exons : out of frame	188203	NA	0	57	10	57
P-0037960-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39911122	42868304	Intron of ERG(-):36Kb after exon 3	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1742:TMPRSS2_c.39+36464:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2957182	NA	0	70	10	73
P-0038005-T02-IM6	SOMATIC	ESR1	ESR1	X	6	148731239	152265637	IGR: 39Kb before MAGEA11(+)	Exon 5 of ESR1(+)	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;X)(q25.1;q28)(chr6:g.152265637::chrX:g.148731239)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	27	10	27
P-0039051-T01-IM6	SOMATIC	EXOC4	SMO	7	7	128845093	133355786	Exon 3 of SMO(+)	Intron of EXOC4(+):41Kb after exon 10	GRCh37	DUPLICATION	EXOC4 (NM_021807) - SMO (NM_005631) rearrangement: c.1514+40892:EXOC4_c.587:SMOdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EXOC4:SMO}	4510693	NA	0	77	10	83
P-0039753-T01-IM6	SOMATIC	GLI1	GLI1	12	12	57864649	59094643	Exon 12 of GLI1(+)	3-UTR of LOC101927653(-):81Kb after coding stop	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.2126:GLI1_chr12:g.59094643inv	PRECISE		MANUAL_OK	3to3	-	1229994	NA	0	77	10	75
P-0039753-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39887474	42871357	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1241:TMPRSS2_c.39+60112:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2983883	NA	0	49	10	51
P-0039784-T01-IM6	SOMATIC	MTOR	MTOR	1	1	11273047	11275257	Intron of MTOR(-):82bp before exon 22	Intron of MTOR(-):947bp after exon 20	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.3117+948_c.3286-82del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2210	NA	0	7	9	7
P-0039804-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	88907146	89521592	IGR: 250Kb before EPHA3(+)	Intron of EPHA3(+):21bp before exon 16	GRCh37	INVERSION	EPHA3 (NM_005233) rearrangement: c.2691-22:EPHA3_chr3:g.88907146inv	PRECISE		MANUAL_OK	5to5	-	614446	NA	0	50	10	68
P-0039940-T01-IM6	SOMATIC	RB1	RB1	16	13	80085839	49030320	IGR: 104Kb before LOC102724084(-)	Intron of RB1(+):19bp before exon 19	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;16)(q14.2;q23.2)(chr13:g.49030320::chr16:g.80085839)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	48	10	52
P-0040083-T01-IM6	SOMATIC	TTYH2	SOX9	17	17	70118690	72255415	Intron of SOX9(+):169bp before exon 2	Intron of TTYH2(+):852bp before exon 14	GRCh37	DUPLICATION	TTYH2 (NM_032646) - SOX9 (NM_000346) rearrangement: c.1525-853:TTYH2_c.432-170:SOX9dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TTYH2:SOX9}	2136725	NA	0	4	9	4
P-0040096-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	2	31390331	65685798	Intron of DNMT3B(+):55bp after exon 20	IGR: 148Kb before SPRED2(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(2;20)(p14;q11.21)(chr2:g.65685798::chr20:g.31390331)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	27	10	27
P-0040119-T01-IM6	SOMATIC	KMT2D	TUBA1B	12	12	49444074	49522663	Exon 11 of KMT2D(-)	Exon 4 of TUBA1B(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) - TUBA1B (NM_006082) rearrangement: c.3297:KMT2D_c.434:TUBA1Bdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2D:TUBA1B}	78589	NA	0	5	0	46
P-0040209-T02-IM6	SOMATIC	RARA	BCAS3	17	17	38498048	59128074	Intron of RARA(+):7Kb before exon 3	Intron of BCAS3(+):10Kb after exon 20	GRCh37	DELETION	RARA (NM_000964) - BCAS3 (NM_001099432) rearrangement: c.179-6520:RARA_c.2074+9821:BCAS3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RARA:BCAS3}	20630026	NA	0	4	10	4
P-0040282-T01-IM6	SOMATIC	NF2	NF2	22	4	30070754	99913084	Intron of NF2(+):70bp before exon 13	IGR: 4Kb before METAP1(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(4;22)(q23;q12.2)(chr4:g.99913084::chr22:g.30070754)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	40	10	40
P-0040347-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15354242	15358241	Exon 14 of BRD4(-)	Intron of BRD4(-):3Kb before exon 12	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2159-2668_c.2638del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3999	NA	0	26	10	29
P-0040355-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88497191	12036111	Intron of NTRK3(-):13Kb before exon 15	Intron of ETV6(+):1Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12036111::chr15:g.88497191)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	84	10	81
P-0040442-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29685161	128673571	Intron of EWSR1(+):386bp after exon 9	Intron of FLI1(+):2Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128673571::chr22:g.29685161)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	127	10	138
P-0040611-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941733	42867713	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1208:TMPRSS2_c.39+5853:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2925980	NA	0	36	10	37
P-0040803-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151857621	152008941	Intron of KMT2C(-):1Kb before exon 44	Exon 5 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.681_c.11461-1464del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	151320	NA	0	32	10	35
P-0040817-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411788	139456931	Exon 9 of NOTCH1(-)	IGR: 15Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1491:NOTCH1_chr9:g.139456931del	IMPPRECISE		MANUAL_OK	3to5	-	45143	NA	0	35	0	39
P-0041523-T01-IM6	SOMATIC	RTEL1	CPQ	20	8	62292750	98069745	Exon 3 of RTEL1(+)	Intron of CPQ(+):8Kb before exon 7	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) - CPQ (NM_016134.3) rearrangement: t(8;20)(q22.1;q13.33)(chr8:g.98069745::chr20:g.62292750)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RTEL1:CPQ}	0	NA	0	175	10	183
P-0041523-T01-IM6	SOMATIC	NBN	NBN	8	8	90958162	140599814	Intron of NBN(-):205bp after exon 13	IGR: 13Kb before KCNK9(-)	GRCh37	INVERSION	NBN (NM_002485) rearrangement: c.2070+206:NBN_chr8:g.140599814inv	PRECISE		MANUAL_OK	5to5	-	49641652	NA	0	18	9	17
P-0041538-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52637640	52667914	Exon 18 of PBRM1(-)	Intron of PBRM1(-):703bp after exon 12	GRCh37	INVERSION	PBRM1 (NM_018313) rearrangement: c.1301+704_c.2676inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	30274	NA	0	53	10	58
P-0041541-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157229474	157521711	Intron of ARID1B(+):7Kb after exon 4	Intron of ARID1B(+):127bp before exon 18	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.1926+6815_c.4111-128del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 13 exons : in frame	292237	NA	0	5	0	5
P-0041618-T01-IM6	SOMATIC	APC	APC	5	5	112141369	112154865	Intron of APC(+):4Kb after exon 8	Exon 10 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.834+4289_c.1136del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13496	NA	0	26	10	79
P-0041626-T01-IM6	SOMATIC	FGF3	FGF3	11	11	69627474	74177470	Intron of FGF3(-):2Kb before exon 3	5-UTR of KCNE3(-):9Kb before coding start	GRCh37	INVERSION	FGF3 (NM_005247) rearrangement: c.325-2006:FGF3_chr11:g.74177470inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4549996	NA	0	379	10	541
P-0041649-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55168668	55222497	Intron of EGFR(+):41Kb before exon 2	Intron of EGFR(+):652bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-41311_c.889+652del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	53829	NA	0	70	0	460
P-0041649-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268568	55272146	Intron of EGFR(+):312bp before exon 25	Intron of EGFR(+):802bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-313_c.3272-803del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3578	NA	0	7	0	7
P-0041947-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176707652	176727814	Exon 18 of NSD1(+)	Promoter of NSD1(+):167Kb from tx start	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.5709:NSD1_chr5:g.176727814del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	20162	NA	0	7	10	7
P-0042014-T01-IM6	SOMATIC	TPM3	NTRK1	1	1	154137062	156845289	Intron of TPM3(-):6Kb after exon 6	Intron of NTRK1(+):22bp before exon 12	GRCh37	INVERSION	TPM3 (NM_001278190) - NTRK1 (NM_002529)  rearrangement: c.601+5814:TPM3_ c.1355-23:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2708227	NA	0	154	10	180
P-0042120-T01-IM6	SOMATIC	CSF1R	CSF1R	5	5	55036856	149459564	Intron of DDX4(+):2Kb after exon 2	Intron of CSF1R(-):50bp after exon 4	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.592+51:CSF1R_chr5:g.55036856del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	94422708	NA	0	2	4	2
P-0042120-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44904621	44938362	Intron of KDM6A(+):6Kb before exon 9	Intron of KDM6A(+):28bp before exon 20	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.655-6333_c.2939-29del	PRECISE		MANUAL_OK	3to5	Deletion of 11 exons : out of frame	33741	NA	0	7	8	7
P-0042152-T01-IM6	SOMATIC	TSHR	TSHR	14	3	81574993	88275067	Intron of TSHR(+):197bp after exon 8	IGR: 76Kb before C3orf38(+)	GRCh37	TRANSLOCATION	TSHR (NM_000369) rearrangement: t(3;14)(p11.1;q31.1)(chr3:g.88275067::chr14:g.81574993)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	12	10	10
P-0042152-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63534434	63545521	Exon 5 of AXIN2(-)	Intron of AXIN2(-):116bp after exon 3	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.956+117_c.1087del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11087	NA	0	14	10	15
P-0042152-T01-IM6	SOMATIC	PRDM14	PRDM14	8	8	70979851	70980771	Intron of PRDM14(-):613bp after exon 4	Intron of PRDM14(-):4bp before exon 3	GRCh37	INVERSION	PRDM14 (NM_024504) rearrangement: c.701-4_c.912+614inv	PRECISE		MANUAL_OK	3to3	-	920	NA	0	2	4	2
P-0042233-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27016394	27023588	IGR: 6Kb before ARID1A(+)	Exon 1 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.694:ARID1A_chr1:g.27016394del	PRECISE		MANUAL_OK	3to5	-	7194	NA	0	5	10	5
P-0042340-T01-IM6	SOMATIC	ASAP3	ID3	1	1	23801844	23885787	Intron of ASAP3(-):9Kb after exon 1	Exon 1 of ID3(-)	GRCh37	DUPLICATION	ASAP3 (NM_017707) - ID3 (NM_002167) rearrangement: c.129+8654:ASAP3_c.131:ID3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ASAP3:ID3}	83943	NA	0	3	7	3
P-0042341-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39880122	42874194	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4078:TMPRSS2_c.40-62578:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994072	NA	0	46	10	47
P-0042358-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	26904763	27088706	IGR: 24Kb before MIR1976(+)	Exon 7 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2315:ARID1A_chr1:g.26904763del	PRECISE		MANUAL_OK	3to5	-	183943	NA	0	31	10	31
P-0042583-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	39962828	42869922	3-UTR of ERG(-):71Kb after coding stop	Intron of TMPRSS2(-):123bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.126+124:TMPRSS2_chr21:g.39962828del	PRECISE		MANUAL_OK	3to5	-	2907094	NA	0	37	10	40
P-0042595-T03-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970952	21972291	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):1Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.406_c.194-1084del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1339	NA	0	13	10	14
P-0042647-T01-IM6	SOMATIC	NOTCH3	ZNF30	19	19	15288360	35423155	Exon 24 of NOTCH3(-)	Intron of ZNF30(+):258bp after exon 3	GRCh37	INVERSION	NOTCH3 (NM_000435) - ZNF30 (NM_001099437) rearrangement: c.4379:NOTCH3_c.160+258:ZNF30inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH3:ZNF30}	20134795	NA	0	32	10	49
P-0042662-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348237	356692	Exon 6 of AXIN1(-)	Intron of AXIN1(-):2Kb before exon 5	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.1117-2251_c.1269del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8455	NA	0	12	10	13
P-0042680-T01-IM6	SOMATIC	TMPRSS2	GCOM1	21	15	42877616	57940741	Intron of TMPRSS2(-):2Kb after exon 1	Intron of GCOM1(+):9Kb after exon 10	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - GCOM1 (NM_001018090) rearrangement: t(15;21)(q21.3;q22.3)(chr15:g.57940741::chr21:g.42877616)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TMPRSS2:GCOM1}	0	NA	0	48	10	58
P-0042795-T02-IM6	SOMATIC	MED12	MED12	X	11	70361631	117477894	Intron of MED12(+):101bp before exon 44	Intron of DSCAML1(-):75Kb before exon 4	GRCh37	TRANSLOCATION	MED12 (NM_005120) rearrangement: t(11;X)(q23.3;q13.1)(chr11:g.117477894::chrX:g.70361631)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	36	10	35
P-0042880-T01-IM6	SOMATIC	RET	RET	10	10	43611020	51588973	Intron of RET(+):836bp after exon 11	Intron of TIMM23B(+):144Kb before exon 7	GRCh37	DELETION	RET (NM_020975) rearrangement: c.2136+836:RET_chr10:g.51588973del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RET:TIMM23B}	7977953	NA	0	58	10	60
P-0042913-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684449	128664632	Intron of EWSR1(+):145bp before exon 9	Intron of FLI1(+):11Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128664632::chr22:g.29684449)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	23	10	21
P-0042960-T01-IM6	SOMATIC	MALT1	ETV4	18	17	56367894	41612825	Intron of MALT1(+):71bp after exon 4	Intron of ETV4(-):968bp after exon 5	GRCh37	TRANSLOCATION	MALT1 (NM_006785) - ETV4 (NM_001986) rearrangement: t(17;18)(q21.31;q21.32)(chr17:g.41612825::chr18:g.56367894)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MALT1:ETV4}	0	NA	0	8	10	13
P-0042985-T01-IM6	SOMATIC	CNTRL	CDKN2B	9	9	22008250	123878592	Intron of CDKN2B(-):546bp after exon 1	Intron of CNTRL(+):1Kb after exon 9	GRCh37	INVERSION	CNTRL (NM_007018) - CDKN2B (NM_004936) rearrangement: c.1455+1114:CNTRL_c.156+547:CDKN2Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CNTRL:CDKN2B}	101870342	NA	0	7	9	7
P-0043128-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39699662	39916653	IGR: 211Kb before BCOR(-)	Intron of BCOR(-):79bp before exon 11	GRCh37	DUPLICATION	BCOR (NM_001123385) rearrangement: c.4429-79:BCOR_chrX:g.39699662dup	PRECISE		MANUAL_OK	5to3	-	216991	NA	0	15	10	15
P-0043135-T01-IM6	SOMATIC	ALK	ALK	2	2	29431701	29449865	Intron of ALK(-):950bp after exon 25	Exon 18 of ALK(-)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.2990_c.3836+951del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18164	NA	0	4	7	4
P-0043326-T01-IM6	SOMATIC	CDK12	SNF8	17	17	37683411	47012127	Intron of CDK12(+):842bp after exon 13	Intron of SNF8(-):1Kb after exon 5	GRCh37	INVERSION	CDK12 (NM_016507) - SNF8 (NM_007241) rearrangement: c.3760+842:CDK12_c.422+1405:SNF8inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CDK12:SNF8}	9328716	NA	0	4	6	4
P-0043336-T01-IM6	SOMATIC	TET1	TET1	10	1	70360699	9933952	Intron of TET1(+):38bp before exon 3	5-UTR of CTNNBIP1(-):23Kb before coding start	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(1;10)(p36.22;q21.3)(chr1:g.9933952::chr10:g.70360699)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	58	10	57
P-0043336-T01-IM6	SOMATIC	ALK	ALK	2	1	29450227	205559556	Intron of ALK(-):212bp after exon 17	Intron of MFSD4(+):2Kb before exon 7	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(1;2)(q32.1;p23.2)(chr1:g.205559556::chr2:g.29450227)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	165	10	178
P-0043336-T01-IM6	SOMATIC	SRC	SRC	20	20	36024939	36135046	Intron of SRC(+):225bp after exon 8	IGR: 11Kb before BLCAP(-)	GRCh37	DELETION	SRC (NM_198291) rearrangement: c.703+225:SRC_chr20:g.36135046del	PRECISE		MANUAL_OK	3to5	-	110107	NA	0	13	7	14
P-0043336-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39831828	42875193	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+4684:TMPRSS2_c.19-14284:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3043365	NA	0	165	10	171
P-0043340-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21791116	21993953	IGR: 12Kb before MTAP(+)	Intron of CDKN2A(-):184bp after exon 1	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.193+185:CDKN2A_chr9:g.21791116del	PRECISE		MANUAL_OK	3to5	-	202837	NA	0	28	10	30
P-0043372-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138550517	140487523	Intron of KIAA1549(-):2Kb after exon 15	Intron of BRAF(-):139bp before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4929+2204:KIAA1549_c.1141-139:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1937006	NA	0	31	10	36
P-0043427-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41263802	41266552	5-UTR of CTNNB1(+):2Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.349:CTNNB1_chr3:g.41263802del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2750	NA	0	22	10	23
P-0043427-T01-IM6	SOMATIC	DUSP4	DUSP4	8	8	29202294	29207704	Intron of DUSP4(-):5Kb before exon 2	Exon 1 of DUSP4(-)	GRCh37	DELETION	DUSP4 (NM_001394) rearrangement: c.92_c.434-4534del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5410	NA	0	153	10	157
P-0043661-T01-IM6	SOMATIC	TGFBR2	TGFBR2	3	3	30713871	30716745	Exon 5 of TGFBR2(+)	Intron of TGFBR2(+):1Kb after exon 6	GRCh37	DELETION	TGFBR2 (NM_001024847) rearrangement: c.1271_c.1471+1007del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2874	NA	0	24	10	24
P-0043914-T01-IM6	SOMATIC	JAK1	JAK1	1	1	65331240	65349002	Intron of JAK1(-):585bp before exon 8	Exon 3 of JAK1(-)	GRCh37	INVERSION	JAK1 (NM_002227) rearrangement: c.163_c.991-585inv	PRECISE		MANUAL_OK	3to3	-	17762	NA	0	3	10	3
P-0043914-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186504952	195046321	Exon 8 of EIF4A2(+)	Intron of ACAP2(-):1Kb after exon 9	GRCh37	DUPLICATION	EIF4A2 (NM_001967) rearrangement: c.808:EIF4A2_chr3:g.195046321dup	PRECISE		MANUAL_OK	5to3	-	8541369	NA	0	24	10	25
P-0043914-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152163642	152175566	Intron of ESR1(+):89bp before exon 3	Intron of ESR1(+):12Kb after exon 3	GRCh37	INVERSION	ESR1 (NM_001122740) rearrangement: c.453-90_c.643+11644inv	PRECISE		MANUAL_OK	5to5	-	11924	NA	0	16	10	16
P-0044185-T01-IM6	SOMATIC	IDH1	IDH1	2	2	209108237	209116629	Exon 6 of IDH1(-)	5-UTR of IDH1(-):15Kb before coding start	GRCh37	DUPLICATION	IDH1 (NM_005896) rearrangement: c.612:IDH1_chr2:g.209116629dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8392	NA	0	2	5	2
P-0044185-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	29683702	29687559	Intron of EWSR1(+):579bp after exon 8	Exon 10 of EWSR1(+)	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.811+579_c.998del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3857	NA	0	6	10	6
P-0044212-T01-IM6	SOMATIC	NF1	NF1	17	17	29355827	29663633	IGR: 53Kb before DPRXP4(+)	Intron of NF1(+):19bp before exon 42	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.6148-20:NF1_chr17:g.29355827del	PRECISE		MANUAL_OK	3to5	-	307806	NA	0	15	10	16
P-0044219-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	27323508	38205259	Intron of CHRNA2(-):1Kb after exon 5	Exon 2 of WHSC1L1(-)	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.431:WHSC1L1_chr8:g.27323508inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10881751	NA	0	88	10	125
P-0044247-T01-IM6	SOMATIC	EWSR1	ATF1	22	12	29684238	51205619	Intron of EWSR1(+):356bp before exon 9	Intron of ATF1(+):2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51205619::chr22:g.29684238)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	40	10	43
P-0044333-T01-IM6	SOMATIC	NOTCH1	GNL3	9	3	139397753	52723317	Exon 27 of NOTCH1(-)	Intron of GNL3(+):95bp after exon 6	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - GNL3 (NM_014366) rearrangement: t(3;9)(p21.1;q34.3)(chr3:g.52723317::chr9:g.139397753)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH1:GNL3}	0	NA	0	8	9	9
P-0044376-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39896184	42874740	Intron of ERG(-):51Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-4624:TMPRSS2_c.39+51402:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2978556	NA	0	80	10	86
P-0044397-T01-IM6	SOMATIC	KIAA1324L	NOTCH2	7	1	86589695	120465401	Intron of KIAA1324L(-):5Kb after exon 2	Exon 27 of NOTCH2(-)	GRCh37	TRANSLOCATION	KIAA1324L (NM_001142749) - NOTCH2 (NM_024408) rearrangement: t(1;7)(p12;q21.12)(chr1:g.120465401::chr7:g.86589695)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIAA1324L:NOTCH2}	0	NA	0	99	0	253
P-0044467-T01-IM6	SOMATIC	SCP2	NTRK1	1	1	53495722	156844773	Intron of SCP2(+):2Kb after exon 12	Exon 11 of NTRK1(+)	GRCh37	DELETION	SCP2 (NM_002979) - NTRK1 (NM_002529) fusion: c.1338+1979:SCP2_c.1327:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SCP2:NTRK1}	103349051	NA	0	107	10	613
P-0044589-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12018568	12023853	Intron of ETV6(+):4Kb before exon 5	Intron of ETV6(+):950bp after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.464-3790_c.1009+950dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	5285	NA	0	113	10	115
P-0044598-T01-IM6	SOMATIC	PLD6	FLCN	17	17	17109041	17124718	Intron of PLD6(-):132bp after exon 1	Intron of FLCN(-):132bp after exon 8	GRCh37	DUPLICATION	PLD6 (NM_178836) - FLCN (NM_144997) rearrangement: c.427+133:PLD6_c.871+133:FLCNdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PLD6:FLCN}	15677	NA	0	25	10	26
P-0044751-T01-IM6	SOMATIC	DNMT1	IL27RA	19	19	10270267	14156124	Intron of DNMT1(-):66bp after exon 16	Intron of IL27RA(+):841bp before exon 7	GRCh37	INVERSION	DNMT1 (NM_001379) - IL27RA (NM_004843) rearrangement: c.1232+67:DNMT1_c.769-842:IL27RAinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {DNMT1:IL27RA}	3885857	NA	0	40	10	48
P-0044768-T01-IM6	SOMATIC	RNF145	FGFR2	10	5	123243127	158598146	Intron of FGFR2(-):84bp after exon 17	Intron of RNF145(-):1Kb before exon 7	GRCh37	TRANSLOCATION	RNF145 (NM_144726) - FGFR2 (NM_000141) rearrangement: t(5;10)(q33.3;q26.13)(chr5:g.158598146::chr10:g.123243127)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RNF145:FGFR2}	0	NA	1	105	10	110
P-0044768-T01-IM6	SOMATIC	FGFR2	DIABLO	12	10	122708063	123243152	Intron of DIABLO(-):995bp after exon 3	Intron of FGFR2(-):59bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - DIABLO (NM_019887) fusion: t(10;12)(q26.13;q24.31)(chr10:g.123243152::chr12:g.122708063)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:DIABLO}	0	NA	5	334	10	377
P-0044793-T01-IM6	SOMATIC	ERBB2	ERBB2	17	17	27068786	37882944	Intron of NEK8(+):190bp before exon 15	Intron of ERBB2(+):32bp after exon 24	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.2970+32:ERBB2_chr17:g.27068786inv	PRECISE		MANUAL_OK	5to5	-	10814158	NA	0	6	10	6
P-0044907-T01-IM6	SOMATIC	MET	MET	7	7	116339401	116388855	Exon 2 of MET(+)	Intron of MET(+):7Kb before exon 6	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.263_c.1702-6554dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	49454	NA	0	3	10	4
P-0044907-T01-IM6	SOMATIC	MED12	NLGN3	X	X	70345011	70383406	Intron of MED12(+):15bp after exon 15	Intron of NLGN3(+):586bp before exon 4	GRCh37	DELETION	MED12 (NM_005120) - NLGN3 (NM_181303) rearrangement: c.2226+15:MED12_c.728-587:NLGN3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MED12:NLGN3}	38395	NA	0	92	10	101
P-0044915-T01-IM6	SOMATIC	JAK1	JAK1	1	1	65300344	67621368	Intron of JAK1(-):4bp before exon 25	IGR: 11Kb before IL23R(+)	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.3370-4:JAK1_chr1:g.67621368del	PRECISE		MANUAL_OK	3to5	-	2321024	NA	0	6	10	6
P-0044922-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63390875	63412681	IGR: 14Kb before AMER1(-)	Exon 2 of AMER1(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.486:AMER1_chrX:g.63390875del	PRECISE		MANUAL_OK	3to5	-	21806	NA	0	10	10	11
P-0045358-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39799430	42873613	Intron of ERG(-):4Kb before exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3497:TMPRSS2_c.237-3947:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3074183	NA	0	95	10	98
P-0045546-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39875013	42870517	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):401bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-401:TMPRSS2_c.40-57469:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2995504	NA	0	30	10	32
P-0045722-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683765	128679847	Intron of EWSR1(+):642bp after exon 8	Intron of FLI1(+):506bp before exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128679847::chr22:g.29683765)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	141	10	150
P-0046449-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55200066	55222262	Intron of EGFR(+):10Kb before exon 2	Intron of EGFR(+):417bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-9913_c.889+417del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	22196	NA	0	54	10	54
P-0047087-T01-IM6	SOMATIC	SUFU	PPAPDC1A	10	10	104375138	122286030	Exon 9 of SUFU(+)	Intron of PPAPDC1A(+):5Kb after exon 5	GRCh37	DELETION	SUFU (NM_016169) - PPAPDC1A (NM_001030059) rearrangement: c.1136:SUFU_c.445+5423:PPAPDC1Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUFU:PPAPDC1A}	17910892	NA	0	14	10	14
P-0049133-T02-IM6	SOMATIC	FGFR2	BICC1	10	10	60410540	123242098	Intron of BICC1(+):30Kb after exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2301+1114:FGFR2_c.237+29879:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62831558	NA	0	48	10	54
P-0050679-T02-IM6	SOMATIC	CSDE1	CSDE1	4	1	126732643	115260796	IGR: 304Kb before MIR2054(+)	Exon 21 of CSDE1(-)	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;4)(p13.2;q28.1)(chr1:g.115260796::chr4:g.126732643)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	18
P-0050679-T02-IM6	SOMATIC	CADPS	EGFR	7	3	55241099	62537410	Intron of EGFR(+):282bp after exon 17	Intron of CADPS(-):2Kb before exon 11	GRCh37	TRANSLOCATION	CADPS (NM_003716) - EGFR (NM_005228) fusion: t(3;7)(p14.2;p11.2)(chr3:g.62537410::chr7:g.55241099)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CADPS:EGFR}	0	NA	0	10	10	14
P-0054542-T04-IM7	SOMATIC	FGFR3	FGFR3	4	4	1808100	1812983	Intron of FGFR3(+):46bp after exon 15	Promoter of FGFR3(+):18Kb from tx start	GRCh37	INVERSION	FGFR3 (NM_000142) rearrangement: c.2030+46:FGFR3_chr4:g.1812983inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	4883	NA	0	3	10	3
P-0054542-T04-IM7	SOMATIC	ROS1	ROS1	6	6	117645121	117646188	Intron of ROS1(-):373bp after exon 34	Intron of ROS1(-):610bp before exon 34	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5558-610_c.5641+374inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1067	NA	0	2	10	2
P-0061500-T01-IM7	SOMATIC	NUP93	NUP93	16	16	56870565	56873064	Exon 17 of NUP93(+)	Intron of NUP93(+):83bp after exon 19	GRCh37	DELETION	NUP93 (NM_014669) rearrangement: c.1835_c.2136+83del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2499	NA	0	3	0	3
P-0061501-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67581858	67588101	Intron of PIK3R1(+):5Kb after exon 7	Exon 8 of PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.916+5024_c.931del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6243	NA	0	30	10	30
P-0061501-T01-IM7	SOMATIC	LRRC16A	ATRX	X	6	76937818	25282741	Exon 9 of ATRX(-)	Intron of LRRC16A(+):2Kb before exon 2	GRCh37	TRANSLOCATION	LRRC16A (NM_017640) - ATRX (NM_000489) rearrangement: t(6;X)(p22.2;q21.1)(chr6:g.25282741::chrX:g.76937818)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LRRC16A:ATRX}	0	NA	0	39	10	38
P-0003279-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1740279	1808708	Intron of TACC3(+):850bp after exon 10	Intron of FGFR3(+):47bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) rearrangement: c.2274+47:FGFR3_c.1941+850:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68429	NA	0	4	5	4
P-0004841-T01-IM5	SOMATIC	ARID2	ARID2	12	12	46125053	46126136	Exon 3 of ARID2(+)	Intron of ARID2(+): 1Kb after exon 3	GRCh37	DELETION	ARID2(NM_152641) Rearrangement :  c.240_284+1039del	PRECISE		MANUAL_OK	3to5	Deletion within transcript: mid-exon	1083	NA	0	6	9	6
P-0005596-T01-IM5	SOMATIC	TMPRSS2	ERG	21	21	39826323	42872344	Intron of ERG(-): 9Kb before exon 4	Intron of TMPRSS2(-): 2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion (TMPRSS2 exon1 with ERG exons 2-10): c.56-2228:TMPRSS2_c.19-8779:ERGdel	PRECISE		MANUAL_OK	3to5	Protein fusion: out of frame (TMPRSS2-ERG)	3046021	NA	0	102	72	130
P-0011252-T01-IM5	SOMATIC	PTEN	PTEN	10	10	89720962	90177234	Intron of PTEN(+): 87bp after exon 8	Intron of RNLS(-): 55Kb before exon 5	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.1026+87:PTEN_chr10:g.90177234del	PRECISE		MANUAL_OK	3to5	Antisense fusion	456272	NA	0	17	21	12
P-0017272-T01-IM6	SOMATIC	MGA	MGA	15	15	28511764	42058540	Intron of HERC2(-):644bp before exon 13	Exon 24 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: chr15:g.28511764_c.8260:MGAdel	PRECISE		MANUAL_OK	3to5	-	13546776	NA	0	41	10	43
P-0018669-T01-IM6	SOMATIC	ARHGAP40	TOP1	20	20	37253954	39709668	Intron of ARHGAP40(+):2Kb before exon 3	Intron of TOP1(+):136bp before exon 7	GRCh37	DELETION	ARHGAP40 (NM_001164431) - TOP1 (NM_003286) rearrangement: c.338-1687:ARHGAP40_c.432-137:TOP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ARHGAP40:TOP1}	2455714	NA	0	12	10	12
P-0020088-T01-IM6	SOMATIC	CIC	CIC	19	19	42796797	48885780	Exon 14 of CIC(+)	Promoter of KDELR1(-):46bp from tx start	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3255:CIC_chr19:g.48885780inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:KDELR1}	6088983	NA	0	45	10	45
P-0020450-T01-IM6	SOMATIC	ALK	ALK	2	2	29448185	123228344	Intron of ALK(-):141bp after exon 19	IGR: 715Kb before TSN(+)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3172+142:ALK_chr2:g.123228344del	PRECISE		MANUAL_OK	3to5	-	93780159	NA	0	17	10	17
P-0021318-T01-IM6	SOMATIC	TP53	TP53	17	17	7572407	7573997	3-UTR of TP53(-):519bp after coding stop	Exon 10 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.*520_c.1030del	PRECISE		MANUAL_OK	3to5	-	1590	NA	0	43	10	46
P-0021532-T02-IM6	SOMATIC	ALK	1311del	2	2	29456486	29457873	Exon 14 of ALK(-)	Intron of ALK(-):1Kb before exon 14	GRCh37	DELETION	ALK (NM_004304) rearrangement c.2432_c.2356-1311del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1387	NA	0	46	10	49
P-0024150-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	112942553	113053952	Exon 15 of PTPN11(+)	IGR: 176Kb before RPH3A(+)	GRCh37	INVERSION	PTPN11 (NM_002834) rearrangement: c.1767_chr12:g.113053952inv	PRECISE		MANUAL_OK	5to5	-	111399	NA	0	2	9	3
P-0024634-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15302967	15335283	Exon 4 of NOTCH3(-)	Promoter of EPHX3(-):2Kb from tx start	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.483:NOTCH3_chr19:g.15335283inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	32316	NA	0	118	10	169
P-0024831-T01-IM6	SOMATIC	TFE3	TFE3	X	X	45846839	48892468	IGR: 139Kb before LOC401585(-)	Intron of TFE3(-):702bp before exon 6	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.886-702:TFE3_chrX:g.45846839inv	PRECISE		MANUAL_OK	3to3	-	3045629	NA	0	299	10	295
P-0025396-T03-IM6	SOMATIC	KSR1	NF1	17	17	25912019	29557697	Intron of KSR1(+):2Kb after exon 5	Intron of NF1(+):162bp before exon 24	GRCh37	DELETION	KSR1 (NM_014238) - NF1 (NM_001042492) rearrangement: c.570-664:KSR1_c.3114-163:NF1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KSR1:NF1}	3645678	NA	0	17	10	19
P-0025396-T03-IM6	SOMATIC	FRMD4B	NF1	17	3	29559104	69238320	Exon 25 of NF1(+)	Intron of FRMD4B(-):726bp after exon 18	GRCh37	TRANSLOCATION	FRMD4B (NM_015123) - NF1 (NM_001042492) rearrangement: t(3;17)(p14.1;q11.2)(chr3:g.69238320::chr17:g.29559104)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FRMD4B:NF1}	0	NA	0	16	10	33
P-0025479-T01-IM6	SOMATIC	BRCA1	BRCA1	17	15	41223156	62705905	Exon 15 of BRCA1(-)	IGR: 71Kb before MIR6085(+)	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(15;17)(q22.2;q21.31)(chr15:g.62705905::chr17:g.41223156)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	26
P-0027130-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48603171	48624512	Intron of SMAD4(+):25bp after exon 11	IGR: 68Kb before SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1447+25:SMAD4_chr18:g.48624512del	PRECISE		MANUAL_OK	3to5	-	21341	NA	0	11	10	11
P-0027130-T01-IM6	SOMATIC	PLK2	PDE4D	5	5	57752758	58304574	Intron of PLK2(-):13bp after exon 8	Intron of PDE4D(-):15Kb before exon 9	GRCh37	DUPLICATION	PLK2 (NM_006622) - PDE4D (NM_001104631) rearrangement: c.1156+14:PLK2_c.922-15282:PDE4Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PLK2:PDE4D}	551816	NA	0	10	10	10
P-0027793-T03-IM6	SOMATIC	BMPR1A	BMPR1A	10	10	42972257	88649828	5-UTR of LINC00839(+):19Kb before coding start	Exon 4 of BMPR1A(+)	GRCh37	INVERSION	BMPR1A (NM_004329) rearrangement: c.77:BMPR1A_chr10:g.42972257inv	PRECISE		MANUAL_OK	5to5	-	45677571	NA	0	31	10	67
P-0027793-T03-IM6	SOMATIC	ANK3	NF1	17	10	29556840	62002222	Intron of NF1(+):12bp before exon 22	Intron of ANK3(-):8Kb before exon 8	GRCh37	TRANSLOCATION	ANK3 (NM_020987) - NF1 (NM_001042492) rearrangement: t(10;17)(q21.2;q11.2)(chr10:g.62002222::chr17:g.29556840)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ANK3:NF1}	0	NA	0	92	10	181
P-0028066-T01-IM6	SOMATIC	BCL6	BCL6	3	3	187103059	187446037	IGR: 17Kb before RTP4(+)	Intron of BCL6(-):110bp after exon 6	GRCh37	DELETION	BCL6 (NM_001706) rearrangement: c.1540+111:BCL6_chr3:g.187103059del	PRECISE		MANUAL_OK	3to5	-	342978	NA	0	3	7	3
P-0028080-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12870765	12871686	5-UTR of CDKN1B(+):8bp before coding start	Intron of CDKN1B(+):72bp before exon 2	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.-9_c.476-73del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	921	NA	0	7	0	8
P-0028080-T01-IM6	SOMATIC	PRKAR1A	PRKAR1A	17	17	65890416	66520977	Intron of BPTF(+):135bp after exon 9	Intron of PRKAR1A(+):75bp before exon 6	GRCh37	INVERSION	PRKAR1A (NM_212471) rearrangement: c.503-76:PRKAR1A_chr17:g.65890416inv	PRECISE		MANUAL_OK	5to5	-	630561	NA	0	9	10	11
P-0028080-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39860946	42875020	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4857:TMPRSS2_c.18+9341:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3014074	NA	0	23	10	23
P-0028283-T02-IM6	SOMATIC	MET	MET	7	7	116381736	116411952	Intron of MET(+):657bp after exon 5	Exon 14 of MET(+)	GRCh37	DELETION	MET (NM_000245) rearrangement: c.1701+657_c.2937del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	30216	NA	0	47	10	55
P-0028328-T01-IM6	SOMATIC	NF1	NF1	17	1	29486091	171191499	Exon 3 of NF1(+)	IGR: 26Kb before FMO1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(1;17)(q24.3;q11.2)(chr1:g.171191499::chr17:g.29486091)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	37	10	37
P-0030380-T01-IM6	SOMATIC	BMPR1A	BMPR1A	10	10	88660169	88681533	Intron of BMPR1A(+):286bp after exon 7	Intron of BMPR1A(+):81bp after exon 11	GRCh37	DUPLICATION	BMPR1A (NM_004329) Rearrangement : c.530+286_c.1342+81dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	21364	NA	0	10	0	11
P-0031560-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12016211	12130883	Intron of ETV6(+):6Kb before exon 5	IGR: 93Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-6147_chr12:g.12130883del	PRECISE		MANUAL_OK	3to5	-	114672	NA	0	21	10	24
P-0031582-T01-IM6	SOMATIC	GREB1L	LMO1	18	11	18956391	8246318	5-UTR of GREB1L(+):7Kb before coding start	Intron of LMO1(-):50bp before exon 4	GRCh37	TRANSLOCATION	GREB1L (NM_001142966) - LMO1 (NM_002315) rearrangement: t(11;18)(p15.4;q11.1)(chr11:g.8246318::chr18:g.18956391)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {GREB1L:LMO1}	0	NA	0	13	10	14
P-0032149-T02-IM6	SOMATIC	ATRX	ATRX	X	X	76937689	76959169	Exon 9 of ATRX(-)	Intron of ATRX(-):5Kb before exon 3	GRCh37	INVERSION	ATRX(NM_000489) Rearrangement: c.3059_c.134-5052del	PRECISE		MANUAL_OK	3to3	-	21480	NA	0	23	10	21
P-0032250-T02-IM7	SOMATIC	PAX5	PAX5	9	9	36980673	37002893	Intron of PAX5(-):14Kb before exon 6	Intron of PAX5(-):120bp before exon 5	GRCh37	DUPLICATION	PAX5 (NM_016734) rearrangement: c.476-120_c.605-13952dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	22220	NA	0	5	0	5
P-0032294-T01-IM6	SOMATIC	WHSC1L1	RAVER2	8	1	38187341	65238717	Exon 6 of WHSC1L1(-)	Intron of RAVER2(+):4Kb after exon 2	GRCh37	TRANSLOCATION	WHSC1L1 (NM_023034) - RAVER2 (NM_018211) rearrangement: t(1;8)(p31.3;p11.23)(chr1:g.65238717::chr8:g.38187341)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WHSC1L1:RAVER2}	0	NA	0	9	10	12
P-0032316-T01-IM6	SOMATIC	NAB2	NAB2	12	12	3659775	57486349	Intron of PRMT8(+):518bp after exon 3	Exon 3 of NAB2(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1076:NAB2_chr12:g.3659775inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	53826574	NA	0	6	10	6
P-0032333-T01-IM6	SOMATIC	GLI1	GLI1	12	12	56782570	57861607	IGR: 28Kb before TIMELESS(-)	Intron of GLI1(+):169bp before exon 10	GRCh37	INVERSION	GLI1(NM_005269) Rearrangement: c.1078-170:GLI1_chr12:g.56782570inv	PRECISE		MANUAL_OK	5to5	-	1079037	NA	0	14	10	16
P-0032333-T01-IM6	SOMATIC	CDK12	CDK12	17	8	37667857	37900447	Exon 8 of CDK12(+)	Intron of EIF4EBP1(+):12Kb after exon 1	GRCh37	TRANSLOCATION	CDK12 (NM_016507) Rearrangement: t(8;17)(p11.23;q21.1)(chr8:g.37900447::chr17:g.37667857)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	73	10	96
P-0032335-T01-IM6	SOMATIC	LIN37	KMT2B	19	19	36222834	36244818	Exon 27 of KMT2B(+)	Intron of LIN37(+):99bp before exon 7	GRCh37	DUPLICATION	LIN37(NM_019104) - KMT2B(NM_014727) fusion: c.445-100:LIN37_c.5463:KMT2Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LIN37:KMT2B}	21984	NA	0	8	10	8
P-0032425-T02-IM6	SOMATIC	NF1	ATAD5	17	17	29207369	29559871	Intron of ATAD5(+):864bp after exon 18	Exon 26 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) - ATAD5 (NM_024857) rearrangement: c.3468:NF1_c.4077+864:ATAD5dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NF1:ATAD5}	352502	NA	0	22	10	34
P-0032425-T02-IM6	SOMATIC	AMER1	AMER1	X	X	63410522	63892165	Exon 2 of AMER1(-)	IGR: 244Kb before ZC4H2(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.2645:AMER1_chrX:g.63892165del	PRECISE		MANUAL_OK	3to5	-	481643	NA	0	70	10	75
P-0033924-T01-IM6	SOMATIC	SUZ12	SUZ12	17	17	30264646	34136244	Intron of SUZ12(+):107bp after exon 1	Promoter of TAF15(+):214bp from tx start	GRCh37	INVERSION	SUZ12 (NM_015355) rearrangement: c.274+107_chr17:g.34136244inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3871598	NA	0	27	10	35
P-0034044-T01-IM6	SOMATIC	NRP2	ALK	2	2	29448550	206605962	Intron of ALK(-):119bp before exon 19	Intron of NRP2(+):575bp after exon 8	GRCh37	INVERSION	NRP2 (NM_201266) - ALK (NM_004304) rearrangement: c.1291+575_c.3068-119inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NRP2:ALK}	177157412	NA	0	64	10	61
P-0035993-T01-IM6	SOMATIC	PAX8	POLR1B	2	2	113301134	113983725	Intron of POLR1B(+):886bp after exon 1	Intron of PAX8(-):1Kb after exon 10	GRCh37	INVERSION	PAX8 (NM_003466) - POLR1B (NM_019014) rearrangement: c.1189+1007:PAX8_c.177+886:POLR1Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAX8:POLR1B}	682591	NA	0	33	10	34
P-0036149-T02-IM6	SOMATIC	DROSHA	DROSHA	5	5	30004476	31410805	IGR: 624Kb before LOC101929681(-)	Intron of DROSHA(-):47bp after exon 30	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.3667+48:DROSHA_chr5:g.30004476del	IMPPRECISE		MANUAL_OK	3to5	-	1406329	NA	0	6	0	7
P-0037023-T01-IM6	SOMATIC	CPNE4	CASP8	3	2	131752452	202131409	Intron of CPNE4(-):4Kb after exon 2	Exon 2 of CASP8(+)	GRCh37	TRANSLOCATION	CPNE4 (NM_130808) - CASP8 (NM_001080125) rearrangement: t(2;3)(q33.1;q22.1)(chr2:g.202131409::chr3:g.131752452)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CPNE4:CASP8}	0	NA	0	8	10	8
P-0037146-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8073292	8081887	Exon 4 of ERRFI1(-)	5-UTR of ERRFI1(-):9Kb before coding start	GRCh37	DUPLICATION	ERRFI1 (NM_018948) Rearrangement : c.-74+4331_c.1367dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8595	NA	0	37	10	40
P-0037146-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55224145	56085559	Intron of EGFR(+):80bp before exon 9	Intron of PSPH(-):487bp before exon 6	GRCh37	DUPLICATION	EGFR (NM_005228) Rearrangement : c.1007-81:EGFR_c.276-487:PSPHdup	PRECISE		MANUAL_OK	5to3	-	861414	NA	0	20	10	22
P-0037328-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268265	55269654	Intron of EGFR(+):159bp after exon 24	Intron of EGFR(+):179bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+15_c.3162+179del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1389	NA	0	91	0	3205
P-0037395-T01-IM6	SOMATIC	TP53	TP53	17	10	7580506	25135641	5-UTR of TP53(-):8Kb before coding start	Promoter of PRTFDC1(-):2Kb from tx start	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(10;17)(p12.1;p13.1)(chr10:g.25135641::chr17:g.7580506)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TP53:PRTFDC1}	0	NA	0	14	10	13
P-0037526-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268916	55871800	Exon 25 of EGFR(+)	Intron of SEPT14(-):1Kb after exon 9	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion: c.2982:EGFR_c.1119+1151:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:SEPT14}	602884	NA	3	358	10	1072
P-0037608-T01-IM6	SOMATIC	PGM5	TMPRSS2	21	9	42869299	71138173	Intron of TMPRSS2(-):746bp after exon 2	Intron of PGM5(+):6Kb before exon 11	GRCh37	TRANSLOCATION	PGM5 (NM_021965) - TMPRSS2 (NM_001135099) rearrangement: t(9;21)(q21.11;q22.3)(chr9:g.71138173::chr21:g.42869299)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PGM5:TMPRSS2}	0	NA	0	40	10	40
P-0037612-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	17	42868077	41635523	Intron of TMPRSS2(-):2Kb before exon 3	IGR: 30Kb before ETV4(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: (17;21)(q21.31;q22.3)(chr17:g.41635523::chr21:g.42868077)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	24	10	33
P-0037757-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	30078906	38456891	Intron of TJP1(-):13Kb before exon 4	IGR: 88Kb before SPRED1(+)	GRCh37	DUPLICATION	SPRED1 (NM_152594): Rearrangement: chr15:g.38456891_chr15:g.30078906dup	PRECISE		MANUAL_OK	5to3	-	8377985	NA	0	11	10	39
P-0037757-T01-IM6	SOMATIC	NF1	NF1	17	17	29557072	52929124	Intron of NF1(+):80bp after exon 22	IGR: 49Kb before TOM1L1(+)	GRCh37	INVERSION	NF1 (NM_001042492): rearrangement: c.2990+80:NF1_chr17:g.52929124inv	PRECISE		MANUAL_OK	3to3	-	23372052	NA	0	72	10	105
P-0037757-T01-IM6	SOMATIC	AGO2	POLB	8	8	42201644	141554151	Intron of POLB(+):826bp before exon 3	Intron of AGO2(-):160bp after exon 14	GRCh37	INVERSION	AGO2(NM_012154) - POLB(NM_002690): Rearrangement: c.1839+161:AGO2_c.120-827:POLBinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {AGO2:POLB}	99352507	NA	0	29	10	30
P-0037867-T01-IM6	SOMATIC	CASP8	CASP8	2	2	202108480	202141637	5-UTR of CASP8(+):23Kb before coding start	Exon 7 of CASP8(+)	GRCh37	DELETION	CASP8 (NM_001080125) rearrangement: c.925:CASP8_chr2:g.202108480del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	33157	NA	0	30	10	33
P-0037903-T01-IM6	SOMATIC	POLE	POLE	12	2	133243918	103227722	Intron of POLE(-):170bp after exon 20	IGR: 8Kb before SLC9A2(+)	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(2;12)(q12.1;q24.33)(chr2:g.103227722::chr12:g.133243918)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	4	7
P-0037903-T01-IM6	SOMATIC	SOCS1	SOCS1	16	16	11348944	11350617	Exon 2 of SOCS1(-)	Promoter of SOCS1(-):2Kb from tx start	GRCh37	INVERSION	SOCS1 (NM_003745) rearrangement: c.392:SOCS1_chr16:g.11350617inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1673	NA	0	2	5	2
P-0037969-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39863298	42869384	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):661bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+662:TMPRSS2_c.18+6989:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3006086	NA	0	19	10	19
P-0039192-T01-IM6	SOMATIC	GRIN2A	GRIN2A	16	16	9857714	26863522	Exon 13 of GRIN2A(-)	IGR: 215Kb before C16orf82(+)	GRCh37	INVERSION	GRIN2A (NM_001134407) rearrangement: c.3687:GRIN2A_chr16:g.26863522inv	PRECISE		MANUAL_OK	5to5	-	17005808	NA	0	7	9	7
P-0039406-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685781	128652054	Intron of EWSR1(+):1Kb after exon 9	Intron of FLI1(+):136bp after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) rearrangement: t(11;22)(q24.3;q12.2)(chr11:g.128652054::chr22:g.29685781)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	NA	0	47	10	44
P-0039665-T01-IM6	SOMATIC	CPM	PDGFRA	12	4	69312178	55144418	Intron of CPM(-):14Kb after exon 2	Intron of PDGFRA(+):110bp before exon 15	GRCh37	TRANSLOCATION	CPM (NM_001005502) - PDGFRA (NM_006206) rearrangement: t(4;12)(q12;q15)(chr4:g.55144418::chr12:g.69312178)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CPM:PDGFRA}	0	NA	0	11	0	11
P-0039732-T01-IM6	SOMATIC	PHF21A	IGF2	11	11	2156846	46045975	Intron of IGF2(-):87bp before exon 3	Intron of PHF21A(-):44Kb before exon 6	GRCh37	DELETION	PHF21A (NM_001101802) - IGF2 (NM_001127598) rearrangement: c.154-44458:PHF21A_c.163-87:IGF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PHF21A:IGF2}	43889129	NA	0	38	10	43
P-0039732-T01-IM6	SOMATIC	MEN1	MEN1	14	11	99779942	64574412	IGR: 84Kb before SETD3(-)	Intron of MEN1(-):70bp after exon 6	GRCh37	TRANSLOCATION	MEN1 (NM_000244) rearrangement: t(11;14)(q13.1;q32.2)(chr11:g.64574412::chr14:g.99779942)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	7	0	7
P-0039903-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55176023	55223431	Intron of EGFR(+):34Kb before exon 2	Intron of EGFR(+):91bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-33956_c.890-92del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	47408	NA	0	717	10	1336
P-0039939-T01-IM6	SOMATIC	MAOB	KDM6A	X	X	43668660	44920522	Intron of MAOB(-):6Kb before exon 4	Intron of KDM6A(+):46bp before exon 14	GRCh37	INVERSION	MAOB (NM_000898) - KDM6A (NM_021140) rearrangement: c.280-6009:MAOB_c.1330-47:KDM6Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {MAOB:KDM6A}	1251862	NA	0	8	10	9
P-0040111-T01-IM6	SOMATIC	CCDC6	RET	10	10	43609967	61626333	Exon 11 of RET(+)	Intron of CCDC6(-):14Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-13873:CCDC6_c.1919:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CCDC6:RET}	18016366	NA	0	44	10	52
P-0040340-T01-IM6	SOMATIC	KMT2D	ADCY6	12	12	49172607	49425393	Intron of ADCY6(-):567bp before exon 2	Exon 39 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) - ADCY6 (NM_015270) rearrangement: c.13095:KMT2D_c.865-567:ADCY6del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2D:ADCY6}	252786	NA	0	11	10	11
P-0040372-T01-IM6	SOMATIC	RAD51C	RAD51C	17	17	56786207	56787452	Intron of RAD51C(+):1Kb before exon 5	Intron of RAD51C(+):101bp after exon 5	GRCh37	INVERSION	RAD51C (NM_058216) rearrangement: c.706-1013_c.837+101inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1245	NA	2	10	0	8
P-0040413-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	61604169	63759806	Intron of CCDC6(-):8Kb after exon 2	Intron of ARID5B(+):43bp before exon 4	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.503-44:ARID5B_chr10:g.61604169del	PRECISE		MANUAL_OK	3to5	-	2155637	NA	0	29	10	30
P-0040413-T01-IM6	SOMATIC	NCOR1	STX8	17	17	9478717	16068425	Intron of STX8(-):391bp after exon 1	Exon 5 of NCOR1(-)	GRCh37	DELETION	NCOR1 (NM_006311) - STX8 (NM_004853) rearrangement: c.486:NCOR1_c.17+392:STX8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NCOR1:STX8}	6589708	NA	0	9	10	19
P-0040593-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	169998254	170006466	Intron of PRKCI(+):63bp after exon 9	Intron of PRKCI(+):3Kb before exon 13	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: c.882+63_c.1204-3176inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	8212	NA	0	9	0	9
P-0040673-T01-IM6	SOMATIC	KCNMA1	ATM	11	10	108100016	79012810	Exon 4 of ATM(+)	Intron of KCNMA1(-):2Kb before exon 3	GRCh37	TRANSLOCATION	KCNMA1 (NM_001161352) - ATM (NM_000051) rearrangement: t(10;11)(q22.3;q22.3)(chr10:g.79012810::chr11:g.108100016)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KCNMA1:ATM}	0	NA	0	18	10	21
P-0040742-T01-IM6	SOMATIC	CDKN1A	CDKN1A	10	6	97688301	36652108	Intron of C10orf131(+):1Kb after exon 7	Exon 3 of CDKN1A(+)	GRCh37	TRANSLOCATION	CDKN1A (NM_078467) rearrangement: t(6;10)(p21.2;q24.1)(chr6:g.36652108::chr10:g.97688301)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	36	10	61
P-0040742-T01-IM6	SOMATIC	PIEZO1	ANKRD11	16	16	88840596	89348735	Intron of PIEZO1(-):11Kb after exon 1	Exon 9 of ANKRD11(-)	GRCh37	DUPLICATION	PIEZO1 (NM_001142864) - ANKRD11 (NM_013275) rearrangement: c.64+10713:PIEZO1_c.4215:ANKRD11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIEZO1:ANKRD11}	508139	NA	0	3	10	3
P-0040742-T01-IM6	SOMATIC	FANCA	FANCA	16	16	89845570	89875017	Intron of FANCA(-):159bp before exon 19	Intron of FANCA(-):242bp before exon 6	GRCh37	DELETION	FANCA (NM_000135) rearrangement: c.523-242:FANCA_chr16:g.89845570del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	29447	NA	0	5	0	5
P-0040858-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139390731	139396054	Exon 34 of NOTCH1(-)	Intron of NOTCH1(-):145bp after exon 30	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.5638+146_c.7460del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5323	NA	0	12	10	12
P-0041092-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55126503	55223373	Intron of EGFR(+):39Kb after exon 1	Intron of EGFR(+):149bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+39445_c.890-150del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	96870	NA	0	60	10	244
P-0041092-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268595	55271943	Intron of EGFR(+):285bp before exon 25	Intron of EGFR(+):1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-286_c.3272-1006del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	3348	NA	0	5	0	5
P-0041157-T01-IM6	SOMATIC	TP53	TP53	17	17	7576254	7578333	Intron of TP53(-):598bp after exon 9	Intron of TP53(-):37bp after exon 5	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.559+38_c.993+599del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	2079	NA	0	36	10	58
P-0041191-T01-IM6	SOMATIC	NF1	NF1	17	6	29486248	34639847	Intron of NF1(+):137bp after exon 3	Intron of C6orf106(-):17Kb before exon 2	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(6;17)(p21.31;q11.2)(chr6:g.34639847::chr17:g.29486248)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	14	10	14
P-0041201-T01-IM6	SOMATIC	EWSR1	EWSR1	22	22	23509045	29690203	Promoter of RAB36(+):22Kb from tx start	Intron of EWSR1(+):2Kb after exon 12	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.1179+1608:EWSR1_chr22:g.23509045dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {EWSR1:RAB36}	6181158	NA	0	8	10	8
P-0041236-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118368020	118374187	Intron of KMT2A(+):630bp before exon 21	Exon 27 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: c.5665-631_c.7580inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	6167	NA	0	17	10	23
P-0041293-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12007566	12059390	Intron of ETV6(+):1Kb after exon 4	3-UTR of RNU6-19P(-):20Kb after coding stop	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.463+1071:ETV6_chr12:g.12059390del	PRECISE		MANUAL_OK	3to5	-	51824	NA	0	45	10	46
P-0041479-T01-IM6	SOMATIC	NCOA3	NCOA3	20	20	30868436	46268365	5-UTR of KIF3B(+):29Kb before coding start	Exon 15 of NCOA3(+)	GRCh37	DELETION	NCOA3 (NM_181659) rearrangement: c.2752:NCOA3_chr20:g.30868436del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KIF3B:NCOA3}	15399929	NA	0	18	10	23
P-0041514-T01-IM6	SOMATIC	MYCN	NBAS	2	2	15508974	16085964	Intron of NBAS(-):2Kb before exon 32	Exon 3 of MYCN(+)	GRCh37	INVERSION	MYCN (NM_005378) - NBAS (NM_015909) rearrangement: c.1140:MYCN_c.3704-2157:NBASinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MYCN:NBAS}	576990	NA	0	32	10	32
P-0041556-T02-IM6	SOMATIC	NF1	NF1	17	17	29654852	29865551	Exon 38 of NF1(+)	Promoter of RAB11FIP4(+):147Kb from tx start	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5604:NF1_chr17:g.29865551del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NF1:RAB11FIP4}	210699	NA	0	49	10	53
P-0041647-T01-IM6	SOMATIC	SHBG	AURKB	17	17	7533794	8110954	Exon 2 of SHBG(+)	Intron of AURKB(-):11bp before exon 4	GRCh37	INVERSION	SHBG (NM_001040) - AURKB (NM_004217) rearrangement: c.172:SHBG_c.152-11:AURKBinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SHBG:AURKB}	577160	NA	0	125	10	124
P-0041647-T01-IM6	SOMATIC	PIK3CB	PIK3CB	3	3	103110154	138426187	IGR: 793Kb before MIR548A3(-)	Intron of PIK3CB(-):56bp before exon 9	GRCh37	INVERSION	PIK3CB (NM_006219) rearrangement: c.1400-56:PIK3CB_chr3:g.103110154inv	IMPPRECISE		MANUAL_OK	3to3	-	35316033	NA	0	7	0	7
P-0041663-T01-IM6	SOMATIC	BRCA1	BRCA1	17	12	41256332	85813278	Intron of BRCA1(-):54bp before exon 6	IGR: 139Kb before ALX1(+)	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(12;17)(q21.31;q21.31)(chr12:g.85813278::chr17:g.41256332)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	20	10	20
P-0041666-T01-IM6	SOMATIC	PARP1	PARP1	1	1	226542797	226552847	IGR: 6Kb before PARP1(-)	Exon 19 of PARP1(-)	GRCh37	DUPLICATION	PARP1 (NM_001618) rearrangement: c.2514:PARP1_chr1:g.226542797dup	PRECISE		MANUAL_OK	5to3	-	10050	NA	0	16	10	16
P-0041666-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40474675	40491525	Intron of STAT3(-):163bp before exon 21	Intron of STAT3(-):98bp before exon 5	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.373-98_c.1889-163dup	PRECISE		MANUAL_OK	5to3	Duplication of 16 exons : out of frame	16850	NA	0	13	10	13
P-0041666-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148523524	148534844	Intron of EZH2(-):21bp after exon 8	Intron of EZH2(-):5Kb before exon 4	GRCh37	DUPLICATION	EZH2 (NM_004456) rearrangement: c.247-5002_c.907+22dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	11320	NA	0	6	10	6
P-0041865-T01-IM6	SOMATIC	CREBBP	CLUAP1	16	16	3575268	3786570	Intron of CLUAP1(+):1Kb before exon 9	Intron of CREBBP(-):80bp after exon 27	GRCh37	INVERSION	CREBBP (NM_004380) - CLUAP1 (NM_015041) rearrangement: c.4560+81:CREBBP_c.856-1144:CLUAP1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CREBBP:CLUAP1}	211302	NA	0	8	10	9
P-0041865-T01-IM6	SOMATIC	CLUAP1	SLX4	16	16	3575330	3646283	Intron of CLUAP1(+):1Kb before exon 9	Exon 8 of SLX4(-)	GRCh37	INVERSION	CLUAP1 (NM_015041) - SLX4 (NM_032444) rearrangement: c.856-1082:CLUAP1_c.1795:SLX4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CLUAP1:SLX4}	70953	NA	0	8	10	8
P-0041865-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3646285	3786570	Exon 8 of SLX4(-)	Intron of CREBBP(-):80bp after exon 27	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_032444) rearrangement: c.4560+81:CREBBP_c.1793:SLX4del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	140285	NA	0	8	0	8
P-0041943-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683564	128644404	Intron of EWSR1(+):441bp after exon 8	Intron of FLI1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128644404::chr22:g.29683564)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	113	10	116
P-0041944-T01-IM6	SOMATIC	RB1	RB1	13	13	48950160	48951080	Intron of RB1(+):893bp before exon 13	Exon 13 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1216-894_c.1242del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	920	NA	0	41	0	80
P-0041944-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39870492	42871871	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-1755:TMPRSS2_c.40-52948:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3001379	NA	0	65	10	65
P-0041955-T01-IM6	SOMATIC	AR	OPHN1	X	X	66931421	67117287	Exon 4 of AR(+)	IGR: 145Kb before OPHN1(-)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2063:AR_chrX:g.67117287del	PRECISE		MANUAL_OK	3to5	-	185866	NA	0	76	10	78
P-0042111-T01-IM6	SOMATIC	IGF1R	IGF1R	15	15	99424870	99434804	Intron of IGF1R(+):10Kb before exon 3	Exon 3 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.641-9684_c.891dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9934	NA	0	6	9	7
P-0042144-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25991675	25994901	Exon 6 of ASXL2(-)	Intron of ASXL2(-):492bp before exon 5	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.404-492_c.567del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3226	NA	0	6	10	6
P-0042144-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42874842	42876014	Intron of TMPRSS2(-):5Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+3863_c.56-4726del	IMPPRECISE		MANUAL_OK	3to5	Deletion within intron	1172	NA	0	30	0	32
P-0042151-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140482791	140491105	Intron of BRAF(-):29bp after exon 10	Intron of BRAF(-):3Kb after exon 8	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1140+3003_c.1314+30del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	8314	NA	0	2	10	0
P-0042151-T01-IM6	SOMATIC	GATA1	GATA1	X	X	48650070	48650852	Intron of GATA1(+):180bp before exon 3	Exon 4 of GATA1(+)	GRCh37	DELETION	GATA1 (NM_002049) rearrangement: c.221-181_c.721del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	782	NA	0	15	0	25
P-0042157-T02-IM6	SOMATIC	TRAF7	TRAF7	17	16	75302737	2223408	Intron of SEPT9(+):485bp before exon 2	Intron of TRAF7(+):8bp after exon 10	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(16;17)(p13.3;q25.3)(chr16:g.2223408::chr17:g.75302737)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	51	0	51
P-0042157-T02-IM6	SOMATIC	NCOR1	TANC2	17	17	16056654	61468322	Exon 7 of NCOR1(-)	Intron of TANC2(+):1Kb after exon 15	GRCh37	INVERSION	NCOR1 (NM_006311) - TANC2 (NM_025185) rearrangement: c.788:NCOR1_c.2829+1417:TANC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NCOR1:TANC2}	45411668	NA	0	32	10	36
P-0042157-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11105844	11148762	Intron of SMARCA4(+):167bp after exon 9	Intron of SMARCA4(+):3Kb after exon 29	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1593+167_c.4170+2954del	PRECISE		MANUAL_OK	3to5	Deletion of 20 exons : in frame	42918	NA	0	12	6	11
P-0042157-T02-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31368174	31576096	Exon 2 of DNMT3B(+)	Intron of SUN5(-):515bp before exon 10	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.45:DNMT3B_chr20:g.31576096del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	207922	NA	0	5	7	5
P-0042157-T02-IM6	SOMATIC	FAT1	FAT1	4	4	187557313	187578491	Exon 6 of FAT1(-)	Intron of FAT1(-):6Kb after exon 3	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.3580+5962_c.4049del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	21178	NA	0	13	10	13
P-0042162-T01-IM6	SOMATIC	RB1	RB1	19	13	4443302	49050895	3-UTR of CHAF1A(+):41Kb after coding stop	Exon 25 of RB1(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;19)(q14.2;p13.3)(chr13:g.49050895::chr19:g.4443302)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	32	10	34
P-0042168-T01-IM6	SOMATIC	RAB11FIP3	TSC2	16	16	509100	2112208	Intron of RAB11FIP3(+):2Kb before exon 2	Intron of TSC2(+):199bp after exon 12	GRCh37	DELETION	RAB11FIP3 (NM_014700) - TSC2 (NM_000548) rearrangement: c.715-2304:RAB11FIP3_c.1257+199:TSC2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RAB11FIP3:TSC2}	1603108	NA	0	5	3	5
P-0121447-T01-IM6	SOMATIC	CDK12	CDK12	17	11	37657662	83568598	Exon 6 of CDK12(+)	Intron of DLG2(-):17Kb after exon 16	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(11;17)(q14.1;q12)(chr11:g.83568598::chr17:g.37657662)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	19	10	20
P-0121447-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61708402	61730967	Exon 24 of XPO1(-)	Intron of XPO1(-):2Kb before exon 5	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.302-1522_c.2987del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	22565	NA	0	3	4	3
P-0042236-T01-IM6	SOMATIC	EGFR	PKD1L1	7	7	47822589	55268824	Intron of PKD1L1(-):8Kb before exon 57	Intron of EGFR(+):56bp before exon 25	GRCh37	INVERSION	EGFR (NM_005228) - PKD1L1 (NM_138295) fusion: c.2947-57:EGFR_c.8527-7825:PKD1L1inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:PKD1L1}	7446235	NA	0	486	0	484
P-0042236-T01-IM6	SOMATIC	EGFR	VWC2	7	7	49937716	55270225	Intron of VWC2(+):14Kb before exon 4	Exon 27 of EGFR(+)	GRCh37	DUPLICATION	EGFR (NM_005228) - VWC2 (NM_198570) fusion: c.3178:EGFR_c.827-13914:VWC2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EGFR:VWC2}	5332509	NA	0	11	10	11
P-0042236-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268794	55355318	Intron of EGFR(+):86bp before exon 25	IGR: 49Kb before ELDR(-)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.2947-87:EGFR_chr7:g.55355318inv	IMPPRECISE		MANUAL_OK	3to3	-	86524	NA	0	22	0	22
P-0042252-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39841609	42873520	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3404:TMPRSS2_c.19-24065:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3031911	NA	0	10	0	11
P-0042281-T01-IM6	SOMATIC	ALK	ALK	2	2	29448093	240030513	Intron of ALK(-):233bp after exon 19	Intron of HDAC4(-):634bp before exon 15	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3172+234:ALK_chr2:g.240030513inv	PRECISE		MANUAL_OK	3to3	-	210582420	NA	0	5	10	5
P-0042292-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29688218	32415337	Intron of EWSR1(+):60bp after exon 11	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415337::chr22:g.29688218)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	222	10	218
P-0042293-T02-IM6	SOMATIC	RB1	RB1	13	13	49009404	49033809	Intron of RB1(+):18Kb before exon 18	Intron of RB1(+):14bp before exon 20	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1696-17725_c.1961-15del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	24405	NA	0	7	10	7
P-0042324-T01-IM6	SOMATIC	CAMK1D	BCL2L11	10	2	12672620	111921589	Intron of CAMK1D(+):36Kb before exon 3	Intron of BCL2L11(+):120bp before exon 4	GRCh37	TRANSLOCATION	CAMK1D (NM_153498) - BCL2L11 (NM_138621) rearrangement: t(2;10)(q13;p13)(chr2:g.111921589::chr10:g.12672620)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CAMK1D:BCL2L11}	0	NA	0	13	10	13
P-0042324-T01-IM6	SOMATIC	NSD1	NSD1	5	5	176718171	176718983	Intron of NSD1(+):783bp before exon 22	Exon 22 of NSD1(+)	GRCh37	INVERSION	NSD1 (NM_022455) rearrangement: c.6259-784_c.6287inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	812	NA	0	4	10	4
P-0042420-T01-IM6	SOMATIC	ABL1	ABL1	9	9	119572065	133759824	Intron of ASTN2(-):4Kb before exon 12	Exon 11 of ABL1(+)	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.2147:ABL1_chr9:g.119572065del	PRECISE		MANUAL_OK	3to5	-	14187759	NA	0	5	8	5
P-0042489-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89711955	89858758	Exon 6 of PTEN(+)	IGR: 175Kb before RNLS(-)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.573:PTEN_chr10:g.89858758del	PRECISE		MANUAL_OK	3to5	-	146803	NA	0	14	10	14
P-0042503-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88556067	12032802	Intron of NTRK3(-):20Kb after exon 14	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12032802::chr15:g.88556067)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	245	10	244
P-0042525-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55204253	55223358	Intron of EGFR(+):6Kb before exon 2	Intron of EGFR(+):164bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-5726_c.890-165del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	19105	NA	0	40	0	172
P-0042548-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27106065	29532886	Exon 20 of ARID1A(+)	Intron of MECR(-):387bp after exon 4	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.5676:ARID1A_chr1:g.29532886del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2426821	NA	0	37	10	37
P-0042591-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2953064	2979821	Exon 22 of CARD11(-)	Intron of CARD11(-):259bp before exon 6	GRCh37	INVERSION	CARD11 (NM_032415) rearrangement: c.685-259_c.2876inv	IMPPRECISE		MANUAL_OK	3to3	-	26757	NA	0	7	0	7
P-0042654-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139342102	139414011	Exon 26 of SEC16A(-)	Exon 5 of NOTCH1(-)	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.6478:SEC16A_c.749:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	71909	NA	1	136	10	153
P-0042700-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41259568	41266488	5-UTR of CTNNB1(+):6Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.285:CTNNB1_chr3:g.41259568del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6920	NA	0	64	10	68
P-0042741-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47636574	47639482	Intron of MSH2(+):658bp before exon 3	Intron of MSH2(+):70bp before exon 4	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.367-659_c.646-71inv	PRECISE		MANUAL_OK	5to5	-	2908	NA	0	4	3	4
P-0042741-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52601601	52620627	Intron of PBRM1(-):3Kb before exon 24	Exon 21 of PBRM1(-)	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.3126_c.3617-3352dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	19026	NA	0	43	10	45
P-0042818-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	25468100	25468813	Intron of DNMT3A(-):21bp after exon 13	Intron of DNMT3A(-):75bp after exon 12	GRCh37	INVERSION	DNMT3A (NM_022552) rearrangement: c.1474+76_c.1554+22inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	713	NA	0	7	10	7
P-0043186-T01-IM6	SOMATIC	TERT	TERT	5	5	1293744	20616692	Exon 2 of TERT(-)	IGR: 843Kb before GUSBP1(+)	GRCh37	DUPLICATION	TERT (NM_198253) rearrangement: c.1257:TERT_chr5:g.20616692dup	PRECISE		MANUAL_OK	5to3	-	19322948	NA	1	16	10	16
P-0043355-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55208002	55221824	Intron of EGFR(+):2Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-1977_c.868del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13822	NA	0	245	10	3594
P-0043355-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268627	55270402	Intron of EGFR(+):253bp before exon 25	Intron of EGFR(+):84bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-254_c.3271+84del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1775	NA	0	173	10	217
P-0043381-T02-IM6	SOMATIC	KMT2A	YAP1	11	11	102100094	118351053	Intron of YAP1(+):338bp before exon 9	Intron of KMT2A(+):100bp after exon 6	GRCh37	DUPLICATION	KMT2A (NM_001197104) - YAP1 (NM_001130145) rearrangement: c.3634+100:KMT2A_c.1277-339:YAP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KMT2A:YAP1}	16250959	NA	0	48	10	50
P-0043419-T01-IM6	SOMATIC	RNF43	ERN1	17	17	56438017	62171988	Intron of RNF43(-):126bp after exon 7	Intron of ERN1(-):3Kb after exon 2	GRCh37	DUPLICATION	RNF43 (NM_017763) - ERN1 (NM_001433) rearrangement: c.849+127:RNF43_c.175+3493:ERN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RNF43:ERN1}	5733971	NA	0	230	10	238
P-0043526-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29684397	128660704	Intron of EWSR1(+):197bp before exon 9	Intron of FLI1(+):9Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128660704::chr22:g.29684397)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	5	10	5
P-0043684-T01-IM6	SOMATIC	NOTCH2	NOTCH2	1	1	114308942	120458107	Exon 7 of RSBN1(-)	Exon 34 of NOTCH2(-)	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.7238:NOTCH2_chr1:g.114308942inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6149165	NA	0	107	10	125
P-0043706-T01-IM6	SOMATIC	ERBB2	CDK12	17	17	37668120	37880249	Intron of CDK12(+):237bp after exon 8	Exon 19 of ERBB2(+)	GRCh37	DUPLICATION	ERBB2 (NM_004448) - CDK12 (NM_016507) rearrangement: c.2293:ERBB2_c.2768+237:CDK12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERBB2:CDK12}	212129	NA	0	17	10	17
P-0043811-T01-IM6	SOMATIC	ETV1	ETV1	7	7	13920882	13950818	IGR: 10Kb before ETV1(-)	Intron of ETV1(-):1Kb before exon 9	GRCh37	DELETION	ETV1 (NM_001163147) rearrangement: c.803-1493:ETV1_chr7:g.13920882del	PRECISE		MANUAL_OK	3to5	-	29936	NA	0	22	10	24
P-0043858-T01-IM6	SOMATIC	PIK3CA	PIK3CA	3	3	178939017	179205705	Intron of PIK3CA(+):72bp after exon 14	IGR: 75Kb before ACTL6A(+)	GRCh37	INVERSION	PIK3CA (NM_006218) rearrangement: c.2187+72:PIK3CA_chr3:g.179205705inv	PRECISE		MANUAL_OK	3to3	-	266688	NA	0	21	10	44
P-0043958-T01-IM6	SOMATIC	EWSR1	EWSR1	22	11	29684218	72542563	Intron of EWSR1(+):376bp before exon 9	Promoter of ATG16L2(+):17Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(11;22)(q13.4;q12.2)(chr11:g.72542563::chr22:g.29684218)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	10	10	13
P-0044075-T01-IM6	SOMATIC	ERBB4	ERBB4	2	2	144181408	212295784	Intron of ARHGAP15(+):12Kb before exon 7	Exon 21 of ERBB4(-)	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.2529:ERBB4_chr2:g.144181408del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	68114376	NA	0	5	10	6
P-0044122-T01-IM6	SOMATIC	RAD51	RAD51	15	15	40878263	40998375	IGR: 8Kb before CASC5(+)	Exon 4 of RAD51(+)	GRCh37	DELETION	RAD51 (NM_002875) rearrangement: c.226:RAD51_chr15:g.40878263del	PRECISE		MANUAL_OK	3to5	-	120112	NA	0	2	4	2
P-0044136-T01-IM6	SOMATIC	CALR	CALR	22	19	20098581	13054505	3-UTR of DGCR8(+):25Kb after coding stop	Intron of CALR(+):21bp before exon 9	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(19;22)(p13.2;q11.21)(chr19:g.13054505::chr22:g.20098581)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	63	10	64
P-0044137-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30672415	30677041	Exon 10 of MDC1(-)	Intron of MDC1(-):907bp before exon 8	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.2222-907_c.4545inv	IMPPRECISE		MANUAL_OK	3to3	-	4626	NA	0	9	0	9
P-0044146-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	51878023	52677171	IGR: 17Kb before IQCF3(+)	Intron of PBRM1(-):92bp after exon 10	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.995+93:PBRM1_chr3:g.51878023del	PRECISE		MANUAL_OK	3to5	-	799148	NA	0	29	10	30
P-0044174-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27083415	27105874	Intron of ARID1A(+):4Kb before exon 5	Exon 20 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.1921-3932_c.5485inv	PRECISE		MANUAL_OK	5to5	-	22459	NA	0	2	10	3
P-0044188-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266129	41266709	Exon 3 of CTNNB1(+)	Intron of CTNNB1(+):11bp after exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.126_c.495+11del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	580	NA	0	18	0	20
P-0044216-T01-IM6	SOMATIC	UBE2W	TCEB1	8	8	74724982	74868361	Intron of UBE2W(-):2Kb before exon 4	Intron of TCEB1(-):72bp before exon 3	GRCh37	DUPLICATION	UBE2W (NM_001001481) - TCEB1 (NM_005648) rearrangement: c.331-2118:UBE2W_c.5-72:TCEB1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {UBE2W:TCEB1}	143379	NA	0	9	0	14
P-0044258-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39927543	42876582	Intron of ERG(-):20Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3295:TMPRSS2_c.39+20043:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2949039	NA	0	6	10	6
P-0044291-T01-IM6	SOMATIC	ETV6	ETV6	12	12	3781481	11905315	Intron of CRACR2A(-):1Kb after exon 7	Intron of ETV6(+):68bp before exon 2	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.34-69:ETV6_chr12:g.3781481del	PRECISE		MANUAL_OK	3to5	-	8123834	NA	0	11	10	11
P-0044415-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1774446	1807576	IGR: 21Kb before FGFR3(+)	Exon 13 of FGFR3(+)	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.1745:FGFR3_chr4:g.1774446del	PRECISE		MANUAL_OK	3to5	-	33130	NA	0	151	10	164
P-0044482-T01-IM6	SOMATIC	ATRX	ATRX	X	X	72451668	76938396	IGR: 20Kb before NAP1L2(-)	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.2352:ATRX_chrX:g.72451668inv	PRECISE		MANUAL_OK	3to3	-	4486728	NA	0	27	10	35
P-0044526-T02-IM6	SOMATIC	FN1	ALK	2	2	29448533	216283633	Intron of ALK(-):102bp before exon 19	Intron of FN1(-):331bp after exon 12	GRCh37	DELETION	FN1 (NM_212482) - ALK (NM_004304) fusion: c.1819+332:FN1_c.3068-102:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FN1:ALK}	186835100	NA	0	33	10	34
P-0044568-T01-IM6	SOMATIC	PRKCI	PRKCI	3	3	169921961	170011203	IGR: 18Kb before PRKCI(+)	Exon 14 of PRKCI(+)	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: c.1324:PRKCI_chr3:g.169921961inv	PRECISE		MANUAL_OK	5to5	-	89242	NA	0	25	10	30
P-0044747-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	61187778	62293272	IGR: 26Kb before MIR133A2(+)	Exon 4 of RTEL1(+)	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.371:RTEL1_chr20:g.61187778inv	PRECISE		MANUAL_OK	5to5	-	1105494	NA	0	3	5	3
P-0044782-T01-IM6	SOMATIC	TP53	TP53	17	17	7575137	7577390	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):108bp after exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.782+109_c.994-1104del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2253	NA	0	25	10	26
P-0044801-T01-IM6	SOMATIC	TSPAN9	TEK	12	9	3328633	27192473	Intron of TSPAN9(+):18Kb after exon 2	Intron of TEK(+):13bp before exon 11	GRCh37	TRANSLOCATION	TSPAN9 (NM_001168320) - TEK (NM_000459) rearrangement: t(9;12)(p21.2;p13.32)(chr9:g.27192473::chr12:g.3328633)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TSPAN9:TEK}	0	NA	0	5	0	5
P-0044804-T01-IM6	SOMATIC	JAK3	JAK3	19	19	1399064	17954466	Intron of GAMT(-):39bp before exon 5	Intron of JAK3(-):119bp after exon 3	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.308+120:JAK3_chr19:g.1399064inv	PRECISE		MANUAL_OK	3to3	-	16555402	NA	0	5	10	5
P-0045298-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	80166458	118375973	IGR: 296Kb before LOC101928944(-)	Exon 27 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.9366:KMT2A_chr11:g.80166458del	PRECISE		MANUAL_OK	3to5	-	38209515	NA	0	87	10	93
P-0048585-T03-IM6	SOMATIC	ARID1A	ARID1A	10	1	70533678	27088668	Intron of CCAR1(+):822bp after exon 19	Exon 7 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;10)(p36.11;q21.3)(chr1:g.27088668::chr10:g.70533678)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	40	10	81
P-0048585-T03-IM6	SOMATIC	CIC	CIC	19	9	42793014	130456657	Intron of CIC(+):25bp before exon 7	Promoter of STXBP1(+):82Kb from tx start	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(9;19)(q34.11;q13.2)(chr9:g.130456657::chr19:g.42793014)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	86	10	97
P-0048761-T01-IM6	SOMATIC	TMPRSS2 exon 1 to ETV5 exon 6	TMPRSS2 exon 1 to ETV5 exon 6	21	3	42873899	185800235	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ETV5(-):1Kb before exon 6	GRCh37	TRANSLOCATION	TMPRSS2 exon 1 to ETV5 exon 6	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV5}	0	NA	0	11	10	12
P-0049133-T04-IM6	SOMATIC	FGFR2	BICC1	10	10	60410540	123242098	Intron of BICC1(+):30Kb after exon 2	Intron of FGFR2(-):1Kb after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2301+1114:FGFR2_c.237+29879:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62831558	NA	0	123	10	135
P-0049188-T01-IM6	SOMATIC	TP53	TP53	17	17	7573962	8205033	Exon 10 of TP53(-)	IGR: 9Kb before ARHGEF15(+)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1065:TP53_chr17:g.8205033del	PRECISE		MANUAL_OK	3to5	-	631071	NA	0	82	10	106
P-0049188-T01-IM6	SOMATIC	MAD1L1	TMPRSS2	21	7	42874884	2217379	Intron of TMPRSS2(-):5Kb before exon 2	Intron of MAD1L1(-):29Kb before exon 11	GRCh37	TRANSLOCATION	MAD1L1 (NM_001013837) - TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p22.3;q22.3)(chr7:g.2217379::chr21:g.42874884)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MAD1L1:TMPRSS2}	0	NA	0	56	10	57
P-0051005-T02-IM7	SOMATIC	GRIN2A	ARID1B	16	6	9857543	157522578	Exon 13 of GRIN2A(-)	Exon 18 of ARID1B(+)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) - ARID1B (NM_020732) rearrangement: t(6;16)(q25.3;p13.2)(chr6:g.157522578::chr16:g.9857543)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GRIN2A:ARID1B}	0	NA	0	414	10	478
P-0051015-T01-IM6	SOMATIC	LATS1	LATS1	6	6	149990663	150001089	Intron of LATS1(-):7Kb after exon 7	Exon 5 of LATS1(-)	GRCh37	DUPLICATION	LATS1 (NM_004690) rearrangement: c.2515_c.2883+6733dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10426	NA	0	31	10	37
P-0058733-T02-IM7	SOMATIC	TP53BP1	UNC13C	15	15	43724729	54666096	Exon 17 of TP53BP1(-)	Intron of UNC13C(+):19Kb before exon 16	GRCh37	INVERSION	TP53BP1 (NM_001141980) - UNC13C (NM_001080534) rearrangement: c.3338:TP53BP1_c.4714-19150:UNC13Cinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TP53BP1:UNC13C}	10941367	NA	0	201	10	252
P-0058733-T02-IM7	SOMATIC	NCOR1	NCOR1	17	17	15958698	15983448	Intron of NCOR1(-):2Kb after exon 40	Intron of NCOR1(-):70bp before exon 26	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.3401-70_c.6392+2130inv	PRECISE		MANUAL_OK	3to3	-	24750	NA	0	25	10	25
P-0058733-T02-IM7	SOMATIC	ATR	TFDP2	3	3	141752522	142176476	Intron of TFDP2(-):28Kb before exon 4	Exon 45 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) - TFDP2 (NM_001178139) rearrangement: c.7625:ATR_c.83-28136:TFDP2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ATR:TFDP2}	423954	NA	0	19	10	21
P-0061303-T02-IM7	SOMATIC	ARRDC4	IGF1R	15	15	98512307	99192892	Intron of ARRDC4(+):45bp before exon 5	Exon 1 of IGF1R(+)	GRCh37	DELETION	ARRDC4 (NM_183376) - IGF1R (NM_000875) rearrangement: c.626-46:ARRDC4_c.82:IGF1Rdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARRDC4:IGF1R}	680585	NA	0	26	10	26
P-0061584-T02-IM7	SOMATIC	INHA	INHA	14	2	58048857	220437240	Intron of SLC35F4(-):706bp before exon 4	Exon 1 of INHA(+)	GRCh37	TRANSLOCATION	INHA (NM_002191) rearrangement: t(2;14)(q35;q22.3)(chr2:g.220437240::chr14:g.58048857)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	19
P-0061661-T01-IM7	SOMATIC	NF1	MED13L	17	12	29542901	116712143	Intron of NF1(+):1Kb after exon 13	Intron of MED13L(-):3Kb after exon 1	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - MED13L (NM_015335) rearrangement: t(12;17)(q24.21;q11.2)(chr12:g.116712143::chr17:g.29542901)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NF1:MED13L}	0	NA	0	9	0	9
P-0061669-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39909116	42874913	Intron of ERG(-):38Kb after exon 3	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4797:TMPRSS2_c.39+38470:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2965797	NA	0	29	10	29
P-0061672-T01-IM7	SOMATIC	STK11	STK11	19	19	1214753	1221930	Intron of STK11(+):4Kb before exon 2	Intron of STK11(+):17bp before exon 7	GRCh37	DUPLICATION	STK11 (NM_000455) rearrangement: c.291-3663_c.863-18dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	7177	NA	0	9	10	9
P-0061675-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876719	42875811	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4066:TMPRSS2_c.40-59175:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2999092	NA	0	46	10	46
P-0061681-T01-IM7	SOMATIC	PTEN	PTEN	10	10	12235947	89720570	5-UTR of NUDT5(-):26Kb before coding start	Intron of PTEN(+):80bp before exon 8	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.802-81:PTEN_chr10:g.12235947del	PRECISE		MANUAL_OK	3to5	-	77484623	NA	0	38	10	47
P-0061686-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39927460	42867946	Intron of ERG(-):20Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1441:TMPRSS2_c.39+20126:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2940486	NA	0	26	10	26
P-0061688-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68842421	70153137	Exon 4 of CDH1(+)	5-UTR of PDPR(+):1Kb before coding start	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.482:CDH1_chr16:g.70153137del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDH1:PDPR}	1310716	NA	0	12	10	13
P-0061691-T01-IM7	SOMATIC	ELL3	TP53BP1	15	15	43771610	44065512	Exon 7 of TP53BP1(-)	Exon 10 of ELL3(-)	GRCh37	DELETION	ELL3 (NM_025165) - TP53BP1 (NM_001141980) rearrangement: c.1073:ELL3_c.773:TP53BP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ELL3:TP53BP1}	293902	NA	0	17	10	18
P-0061691-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098967	178113383	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):14Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-14384_c.78del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14416	NA	0	27	10	29
P-0061691-T01-IM7	SOMATIC	ARID1A	ARID1A	4	1	147129470	27023966	IGR: 33Kb before LSM6(+)	Exon 1 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;4)(p36.11;q31.22)(chr1:g.27023966::chr4:g.147129470)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	43	10	43
P-0061692-T01-IM7	SOMATIC	PDGFRA	PDGFRA	4	4	40600526	55131120	5-UTR of RBM47(-):173Kb before coding start	Exon 5 of PDGFRA(+)	GRCh37	INVERSION	PDGFRA (NM_006206) rearrangement: c.663:PDGFRA_chr4:g.40600526inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PDGFRA:RBM47}	14530594	NA	0	35	10	35
P-0061700-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47643437	48459098	Exon 6 of MSH2(+)	IGR: 83Kb before FOXN2(+)	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.945:MSH2_chr2:g.48459098inv	PRECISE		MANUAL_OK	3to3	-	815661	NA	0	8	10	8
P-0061739-T01-IM7	SOMATIC	POLE	POLE	12	1	133218340	3997779	Exon 39 of POLE(-)	Promoter of LINC01346(+):3Kb from tx start	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(1;12)(p36.32;q24.33)(chr1:g.3997779::chr12:g.133218340)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	46	10	45
P-0061739-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55186655	55223310	Intron of EGFR(+):23Kb before exon 2	Intron of EGFR(+):212bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-23324_c.890-213del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	36655	NA	0	128	0	720
P-0061739-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268239	55270446	Intron of EGFR(+):133bp after exon 24	Intron of EGFR(+):128bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+133_c.3271+128del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2207	NA	0	62	10	66
P-0061740-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2210850	2240226	Exon 14 of DOT1L(+)	5-UTR of SF3A2(+):3Kb before coding start	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.1347:DOT1L_chr19:g.2240226inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	29376	NA	0	59	10	59
P-0061742-T01-IM7	SOMATIC	TRAF7	TRAF7	16	16	2178890	2223927	Intron of PKD1(-):7Kb after exon 1	Exon 13 of TRAF7(+)	GRCh37	DELETION	TRAF7 (NM_032271) rearrangement: c.1141:TRAF7_chr16:g.2178890del	PRECISE		MANUAL_OK	3to5	-	45037	NA	0	5	10	7
P-0061742-T01-IM7	SOMATIC	PIK3CB	FOXL2	3	3	138450928	138664691	Intron of PIK3CB(-):1Kb after exon 6	Exon 1 of FOXL2(-)	GRCh37	DUPLICATION	PIK3CB (NM_006219) - FOXL2 (NM_023067) rearrangement: c.1050+1275:PIK3CB_c.874:FOXL2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3CB:FOXL2}	213763	NA	0	17	10	17
P-0061764-T01-IM7	SOMATIC	FGFR2	BNIP2	15	10	59975666	123243170	Intron of BNIP2(-):953bp before exon 2	Intron of FGFR2(-):41bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - BNIP2 (NM_004330) fusion: t(10;15)(q26.13;q22.2)(chr10:g.123243170::chr15:g.59975666)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:BNIP2}	0	NA	0	25	10	25
P-0061765-T01-IM7	SOMATIC	SETDB1	SETDB1	10	1	114705926	150935084	IGR: 4Kb before TCF7L2(+)	Exon 18 of SETDB1(+)	GRCh37	TRANSLOCATION	SETDB1 (NM_001145415) rearrangement: t(1;10)(q21;p25.2)(chr1:g.150935084::chr10:g.114705926)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	28	0	28
P-0061765-T01-IM7	SOMATIC	DIP2B	SMARCD1	12	12	50488004	51005644	Intron of SMARCD1(+):215bp before exon 10	Intron of DIP2B(+):14Kb before exon 2	GRCh37	DUPLICATION	DIP2B (NM_173602) - SMARCD1 (NM_003076) rearrangement: c.101-14115:DIP2B_c.1134-216:SMARCD1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DIP2B:SMARCD1}	517640	NA	0	7	7	7
P-0061765-T01-IM7	SOMATIC	DNAJB1	DNAJB1	19	19	14195927	14629069	Intron of C19orf67(-):177bp after exon 1	Exon 1 of DNAJB1(-)	GRCh37	DUPLICATION	DNAJB1 (NM_006145) rearrangement: c.93:DNAJB1_chr19:g.14195927dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {C19orf67:DNAJB1}	433142	NA	0	33	10	37
P-0061765-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	4	15299882	36701096	Exon 8 of NOTCH3(-)	IGR: 415Kb before DTHD1(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(4;19)(p14;p13.12)(chr4:g.36701096::chr19:g.15299882)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0061118-T02-IM7	SOMATIC	SMARCA2	PRUNE2	9	9	2116248	79362985	Intron of SMARCA2(+):199bp after exon 25	Intron of PRUNE2(-):34Kb before exon 7	GRCh37	INVERSION	SMARCA2 (NM_003070) - PRUNE2 (NM_015225) rearrangement: c.3684+199:SMARCA2_c.757-34348:PRUNE2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SMARCA2:PRUNE2}	77246737	NA	0	11	7	11
P-0004863-T01-IM5	SOMATIC	LDLR	SMARCA4	19	19	11150025	11218725	Intron of SMARCA4(+): 109bp before exon 30	Intron of LDLR(+): 535bp after exon 6	GRCh37	DUPLICATION	LDLR (NM_000527)  - SMARCA4 (NM_003072) rearrangement : c.940+53:LDLR_c.4171-1958:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein fusion: out of frame (LDLR-SMARCA4)	68700	NA	0	6	3	6
P-0006921-T02-IM7	SOMATIC	ROS1	ROS1	6	4	117648517	25679038	Intron of ROS1(-):940bp before exon 33	3-UTR of SLC34A2(+):15Kb after coding stop	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(4;6)(p15.2;q22.1)(chr4:g.25679038::chr6:g.117648517)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	55	10	57
P-0009748-T01-IM5	SOMATIC	ERBB2	SHC1	17	1	37883375	154946879	Intron of ERBB2(+): 119bp after exon 25	5-UTR of SHC1(-): 4Kb before coding start	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) - SHC1 (NM_001130041) rearrangement: t(1;17)(q21.3;q12)(chr1:g.154946879::chr17:g.37883375)	PRECISE		MANUAL_OK	3to3	Transcript fusion (ERBB2-SHC1)	0	NA	0	32	17	25
P-0011416-T02-IM6	SOMATIC	FUBP1	CLSTN2	3	1	140274155	78434666	Intron of CLSTN2(+):1Kb before exon 11	Intron of FUBP1(-):779bp before exon 3	GRCh37	TRANSLOCATION	FUBP1 (NM_003902) - CLSTN2 (NM_022131) rearrangement: t(1;3)(p31.1;q23)(chr1:g.78434666::chr3:g.140274155)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FUBP1:CLSTN2}	0	NA	0	5	0	5
P-0014640-T01-IM6	SOMATIC	FAT1	FAT1	16	4	84263298	187630430	Intron of KCNG4(-): 7Kb before exon 3	Exon 2 of FAT1(-)	GRCh37	TRANSLOCATION	FAT1 (NM_005245) Rearrangement :  t(4;16)(q35.2;q24.1)(chr4:g.187630430::chr16:g.:84263298)	PRECISE		MANUAL_OK	5to5	Antisense fusion	0	NA	0	21	16	21
P-0014640-T01-IM6	SOMATIC	FAT1	FAT1	4	1	187630550	103194060	Exon 2 of FAT1(-)	IGR: 148Kb before COL11A1(-)	GRCh37	TRANSLOCATION	FAT1 (NM_005245) Rearrangement : t(1;4)(p21.1;q35.2)(chr1:g.103194060::chr4:g.187630550)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	25	24	25
P-0016989-T02-IM6	SOMATIC	FGFR3	TACC3	4	4	1737319	1808718	Intron of TACC3(+):138bp before exon 8	Intron of FGFR3(+):57bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+57:FGFR3_c.1645-139:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71399	NA	0	111	10	117
P-0018097-T01-IM6	SOMATIC	FGFR2	FGFR2	10	10	123243921	135399756	Intron of FGFR2(-):604bp before exon 17	IGR: 19Kb before SPRNP1(-)	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.2196-604_chr10:g.135399756inv	PRECISE		MANUAL_OK	5to5	-	12155835	NA	0	3	10	5
P-0020042-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	5914113	32180658	IGR: 84Kb before NRN1(-)	Exon 16 of NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: chr6:g.5914113_c.246inv	PRECISE		MANUAL_OK	5to5	-	26266545	NA	0	12	10	15
P-0020042-T01-IM6	SOMATIC	PHACTR1	NOTCH4	6	6	12918702	32180361	Intron of PHACTR1(+):135Kb before exon 5	Exon 17 of NOTCH4(-)	GRCh37	INVERSION	PHACTR1 (NM_001242648) - NOTCH4 (NM_004557) rearrangement: c.251-134895:PHACTR1_c.2570:NOTCH4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PHACTR1:NOTCH4}	19261659	NA	0	13	10	13
P-0020624-T01-IM6	SOMATIC	SH2D1A	SH2D1A	X	X	123504214	123506403	Intron of SH2D1A(+):44bp after exon 3	3-UTR of SH2D1A(+):26Kb after coding stop	GRCh37	DELETION	SH2D1A (NM_002351) rearrangement: c.346+44_c.*1162del	PRECISE		MANUAL_OK	3to5	-	2189	NA	0	2	6	2
P-0020624-T02-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15270596	15272330	3-UTR of NOTCH3(-):876bp after coding stop	Exon 33 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.*877_c.6109del	PRECISE		MANUAL_OK	3to5	-	1734	NA	0	3	10	3
P-0021747-T04-IM7	SOMATIC	INPPL1	INPPL1	11	11	71945397	71946257	Exon 20 of INPPL1(+)	Intron of INPPL1(+):10bp after exon 22	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.2285_c.2503+10inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	860	NA	0	22	10	22
P-0021794-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11847557	12020473	Intron of ETV6(+):44Kb after exon 1	Intron of ETV6(+):2Kb before exon 5	GRCh37	DELETION	ETV6 (NM_001987) Rearrangement : c.33+44463_c.464-1885del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	172916	NA	0	10	0	10
P-0022156-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46731125	46733203	Intron of RAD54L(+):2Kb before exon 10	Exon 10 of RAD54L(+)	GRCh37	DELETION	RAD54L (NM_001142548) rearrangement: c.892-2006_c.964del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2078	NA	0	48	0	53
P-0022156-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32910992	32942344	Exon 11 of BRCA2(+)	Intron of BRCA2(+):2Kb before exon 19	GRCh37	DELETION	BRCA2 (M_000059) rearrangement: c.2500_c.8332-2195del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31352	NA	0	57	10	62
P-0024831-T03-IM6	SOMATIC	KEAP1	KEAP1	19	19	10600324	28027661	Exon 4 of KEAP1(-)	IGR: 254Kb before LINC00662(-)	GRCh37	INVERSION	KEAP1 (NM_203500) rearrangement: c.1531_chr19:g.28027661inv	PRECISE		MANUAL_OK	5to5	-	17427337	NA	0	6	10	7
P-0024831-T03-IM6	SOMATIC	TFE3	TFE3	X	X	45846839	48892468	IGR: 139Kb before LOC401585(-)	Intron of TFE3(-):702bp before exon 6	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: chrX:g.45846839_c.886-702inv	PRECISE		MANUAL_OK	3to3	-	3045629	NA	0	188	10	185
P-0025810-T01-IM6	SOMATIC	TRAF7	TRAF7	16	16	2225458	8294757	Intron of TRAF7(+):40bp after exon 16	IGR: 282Kb before TMEM114(-)	GRCh37	INVERSION	TRAF7 (NM_032271) rearrangement: c.1503+40:TRAF7_chr16:g.8294757inv	PRECISE		MANUAL_OK	3to3	-	6069299	NA	0	5	10	5
P-0025810-T01-IM6	SOMATIC	BRCA1	BRCA1	17	8	41244313	99107392	Exon 10 of BRCA1(-)	Promoter of ERICH5(+):31Kb from tx start	GRCh37	TRANSLOCATION	BRCA1 (NM_007294) rearrangement: t(8;17)(q22.2;q21.31)(chr8:g.99107392::chr17:g.41244313)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRCA1:ERICH5}	0	NA	0	7	10	8
P-0027025-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140485209	140566703	Intron of BRAF(-):2Kb after exon 9	Intron of BRAF(-):17Kb before exon 2	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.139-16691_c.1177+2139del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	81494	NA	0	39	10	42
P-0030152-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55195777	55222512	Intron of EGFR(+):14Kb before exon 2	Intron of EGFR(+):667bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-14202_c.889+667del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	26735	NA	0	15	10	16
P-0030650-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29687599	32415010	Intron of EWSR1(+):11bp after exon 10	Intron of WT1(-):709bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415010::chr22:g.29687599)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	60	10	58
P-0031769-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151842938	151843767	Intron of KMT2C(-):558bp before exon 54	Exon 53 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.13948_c.14032-558del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	829	NA	0	17	10	18
P-0032547-T01-IM6	SOMATIC	ERBB3	ERBB3	12	12	56495769	56496618	Exon 28 of ERBB3(+)	3-UTR of ERBB3(+):23Kb after coding stop	GRCh37	DELETION	ERBB3 (NM_001982) rearrangement: c.3959:ERBB3_chr12:g.56496618del	IMPPRECISE		MANUAL_OK	3to5	-	849	NA	0	8	0	18
P-0032547-T01-IM6	SOMATIC	ERCC4	ERCC4	18	16	333129	14015988	Exon 7 of COLEC12(-)	Exon 2 of ERCC4(+)	GRCh37	TRANSLOCATION	ERCC4 (NM_005236) rearrangement: t(16;18)(p13.12;p11.32)(chr16:g.14015988::chr18:g.333129)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	26	10	26
P-0033066-T01-IM6	SOMATIC	STRN	ALK	2	2	29448365	37133845	Exon 19 of ALK(-)	Intron of STRN(-):1Kb before exon 4	GRCh37	DELETION	STRN (NM_003162) - ALK (NM_004304) fusion( STRN exons 1-3 fused to ALK exons 19-29): c.413-1084:STRN_c.3134:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STRN:ALK}	7685480	NA	0	71	10	83
P-0034063-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40479640	40497576	Intron of STAT3(-):1Kb before exon 15	Exon 4 of STAT3(-)	GRCh37	DELETION	STAT3(NM_139276) Rearrangement: c.372+1_c.1282-1423	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17936	NA	0	22	10	22
P-0034131-T01-IM6	SOMATIC	ETV6	ETV6	12	6	12030529	32990236	Intron of ETV6(+):7Kb before exon 6	IGR: 18Kb before HLA-DOA(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(6;12)(p21.32;p13.2)(chr6:g.32990236::chr12:g.12030529)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	36	10	39
P-0034897-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39874031	42871482	Intron of ERG(-):56Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-56487:ERG_c.56-1366:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2997451	NA	0	36	10	36
P-0036175-T01-IM6	SOMATIC	RB1	RB1	13	13	48827936	49027159	Intron of ITM2B(+):7bp before exon 2	Exon 18 of RB1(+)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1726:RB1_chr13:g.48827936inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	199223	NA	0	16	10	15
P-0036570-T01-IM6	SOMATIC	GSDMA	ERBB2	17	17	37865415	38125047	Intron of ERBB2(+):155bp before exon 4	Intron of GSDMA(+):2Kb before exon 4	GRCh37	DUPLICATION	GSDMA (NM_178171) - ERBB2 (NM_004448)  Rearrangement : c.393-1688:GSDMA_c.440-156dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {GSDMA:ERBB2}	259632	NA	0	12	10	12
P-0036912-T02-IM6	SOMATIC	CDC73	CDC73	1	1	192579435	193219791	IGR: 26Kb before RGS13(+)	Intron of CDC73(+):14bp before exon 17	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.1560-15:CDC73_chr1:g.192579435del	PRECISE		MANUAL_OK	3to5	-	640356	NA	0	43	10	44
P-0036966-T01-IM6	SOMATIC	PIK3R3	LRRC41	1	1	46509488	46756288	Exon 10 of PIK3R3(-)	Intron of LRRC41(-):4Kb before exon 4	GRCh37	DUPLICATION	PIK3R3 (NM_003629) - LRRC41 (NM_006369) rearrangement: c.1243:PIK3R3_c.358-4117:LRRC41dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3R3:LRRC41}	246800	NA	0	8	0	11
P-0036966-T01-IM6	SOMATIC	SNRK	MYC	8	3	128750517	43357294	Exon 2 of MYC(+)	Intron of SNRK(+):12Kb after exon 3	GRCh37	TRANSLOCATION	SNRK (NM_001100594) - MYC (NM_002467) rearrangement: t(3,8)(p22.1;q24.21)(chr3:g.43357294::chr8:g.128750517)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SNRK:MYC}	0	NA	0	37	10	36
P-0037042-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	118342430	118343896	Exon 3 of KMT2A(+)	Exon 3 of KMT2A(+)	GRCh37	DELETION	KMT2A (NM_001197104) rearrangement: c.556_c.2022del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1466	NA	0	2	7	2
P-0037173-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688297	128670710	Intron of EWSR1(+):139bp after exon 11	Intron of FLI1(+):5Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128670710::chr22:g.29688297)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	103	10	114
P-0037310-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49433353	66391096	Exon 32 of KMT2D(-)	IGR: 26Kb before MIR6074(-)	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.8094_chr12:g.66391096inv	PRECISE		MANUAL_OK	5to5	-	16957743	NA	0	71	10	83
P-0037343-T01-IM6	SOMATIC	KRAS	KRAS	12	2	25398156	56012815	Intron of KRAS(-):51bp after exon 2	IGR: 80Kb before EFEMP1(-)	GRCh37	TRANSLOCATION	KRAS (NM_033360) rearrangement: t(2;12)(p16.q;p12.1)(chr2:g.56012815::chr12:g.25398156)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	51	10	51
P-0037381-T01-IM6	SOMATIC	FLT3	FLT3	13	13	28496734	28611217	Intron of PDX1(+):2Kb before exon 2	Intron of FLT3(-):104bp after exon 10	GRCh37	DELETION	FLT3 (NM_004119) rearrangement: c.1309+105:FLT3_chr13:g.28496734del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	114483	NA	0	12	8	12
P-0037535-T01-IM6	SOMATIC	SRC	RPN2	20	20	35839566	36028647	Intron of RPN2(+):998bp after exon 7	Exon 10 of SRC(+)	GRCh37	DUPLICATION	SRC (NM_198291) - RPN2 (NM_002951) rearrangement: c.989:SRC_c.986+998:RPN2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SRC:RPN2}	189081	NA	0	21	10	27
P-0037535-T01-IM6	SOMATIC	MST1R	MST1R	3	3	49933803	49938145	Exon 10 of MST1R(-)	Intron of MST1R(-):1Kb before exon 2	GRCh37	DELETION	MST1R (NM_002447) rearrangement: c.1231-1449_c.2474:del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4342	NA	0	36	10	36
P-0037541-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31379356	36490825	Intron of DNMT3B(+):50bp before exon 8	Intron of CTNNBL1(+):2Kb after exon 15	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.814-51:DNMT3B_chr20:g.36490825inv	PRECISE		MANUAL_OK	5to5	-	5111469	NA	0	24	10	25
P-0037610-T01-IM6	SOMATIC	ETV6	NTRK3	15	12	88594532	12014663	Intron of NTRK3(-):18Kb before exon 14	Intron of ETV6(+):8Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) rearrangement: t(12;15)(p13.2;q25.3)(chr12:g.12014663::chr15:g.88594532)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	29	10	28
P-0037750-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39861145	42876260	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3617:TMPRSS2_c.18+9142:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3015115	NA	0	18	10	19
P-0037760-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43785386	43810133	Promoter of TP53BP1(-):86Kb from tx start	5-UTR of RNU6-28P(+):85Kb before coding start	GRCh37	DELETION	TP53BP1(NM_001141980) Rearrangement: c.-145:TP53BP1_chr15:g.43810133	IMPPRECISE		MANUAL_OK	3to5	-	24747	NA	0	9	0	9
P-0037953-T01-IM6	SOMATIC	CDH1	CDH1	16	16	68848903	68855972	Intron of CDH1(+):514bp before exon 10	Exon 12 of CDH1(+)	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement: c.1321-515_c.1780dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7069	NA	0	44	10	60
P-0037968-T01-IM6	SOMATIC	RPTOR	RPTOR	17	17	78919515	78926053	Exon 26 of RPTOR(+)	Intron of RPTOR(+):3Kb after exon 28	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.3074_c.3370+2706del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6538	NA	0	5	0	5
P-0038146-T01-IM6	SOMATIC	PDGFRA	PDGFRA	4	4	55152036	123351926	Exon 18 of PDGFRA(+)	Promoter of ADAD1(+):51Kb from tx start	GRCh37	DELETION	PDGFRA (NM_006206) rearrangement: c.2468_chr4:g.123351926del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PDGFRA:ADAD1}	68199890	NA	0	10	10	10
P-0038498-T01-IM6	SOMATIC	NCOR1	CENPV	17	17	16029496	16250586	Exon 15 of NCOR1(-)	Intron of CENPV(-):1Kb after exon 3	GRCh37	DUPLICATION	NCOR1 (NM_006311) - CENPV (NM_181716) rearrangement: c.1534:NCOR1_c.579+1344:CENPVdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOR1:CENPV}	221090	NA	0	8	9	8
P-0038498-T03-IM6	SOMATIC	NCOR1	CENPV	17	17	16029464	16250571	Exon 15 of NCOR1(-)	Intron of CENPV(-):1Kb after exon 3	GRCh37	DUPLICATION	NCOR1 (NM_006311) - CENPV (NM_181716) rearrangement: c.1566:NCOR1_c.579+1359:CENPVdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NCOR1:CENPV}	221107	NA	0	7	9	7
P-0039666-T02-IM6	SOMATIC	RAD51C	RAD51C	17	5	56772289	142325223	Intron of RAD51C(+):2bp before exon 2	Intron of ARHGAP26(+):14Kb after exon 11	GRCh37	TRANSLOCATION	RAD51C (NM_058216) rearrangement: t(5;17)(q31.3;q22)(chr5:g.142325223::chr17:g.56772289)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	17	0	23
P-0039731-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55108079	55223147	Intron of EGFR(+):21Kb after exon 1	Intron of EGFR(+):375bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+21021_c.890-376del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	115068	NA	0	355	0	1801
P-0040113-T02-IM6	SOMATIC	RICTOR	RICTOR	5	5	38967842	38969283	Intron of RICTOR(-):202bp after exon 12	Intron of RICTOR(-):1Kb before exon 12	GRCh37	DUPLICATION	RICTOR (NM_152756) rearrangement: c.973-1151_c.1060+203dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1441	NA	0	9	10	9
P-0040447-T01-IM6	SOMATIC	RB1	RB1	13	13	48998787	49030603	Intron of RB1(+):28Kb before exon 18	Intron of RB1(+):118bp after exon 19	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1696-28342_c.1960+118dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	31816	NA	0	10	8	10
P-0040447-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2067589	2228346	IGR: 3Kb before MOB3A(-)	Intron of DOT1L(+):1Kb after exon 27	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.4606+1220:DOT1L_chr19:g.2067589del	PRECISE		MANUAL_OK	3to5	-	160757	NA	0	27	10	29
P-0040532-T01-IM6	SOMATIC	SLC24A3	BCL2L11	20	2	19507624	111887601	Intron of SLC24A3(+):11Kb after exon 3	Intron of BCL2L11(+):6Kb after exon 2	GRCh37	TRANSLOCATION	SLC24A3 (NM_020689) - BCL2L11 (NM_138621) rearrangement: t(2;20)(q13;p11.23)(chr2:g.111887601::chr20:g.19507624)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SLC24A3:BCL2L11}	0	NA	0	5	0	5
P-0040532-T01-IM6	SOMATIC	NUF2	NUF2	8	1	78255575	163307802	IGR: 107Kb before LOC102724874(+)	Intron of NUF2(+):7bp before exon 7	GRCh37	TRANSLOCATION	NUF2 (NM_031423) rearrangement: t(1;8)(q23.3;q21.11)(chr1:g.163307802::chr8:g.78255575)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	23	10	22
P-0040533-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46508673	46511557	3-UTR of PIK3R3(-):671bp after coding stop	Intron of PIK3R3(-):32bp after exon 9	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.1187+33:PIK3R3_chr1:g.46508673del	PRECISE		MANUAL_OK	3to5	-	2884	NA	0	35	10	39
P-0040533-T01-IM6	SOMATIC	ELF3	ELF3	6	1	21341871	201982527	IGR: 144Kb before LINC00581(-)	Intron of ELF3(+):101bp after exon 7	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;6)(q32.1;p22.3)(chr1:g.201982527::chr6:g.21341871)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	33	0	33
P-0040546-T01-IM6	SOMATIC	STAT5A	STAT5A	17	17	40444833	40459599	Intron of STAT5A(+):754bp after exon 5	Intron of STAT5A(+):11bp before exon 16	GRCh37	DUPLICATION	STAT5A (NM_003152) rearrangement: c.375+754_c.1776-12dup	PRECISE		MANUAL_OK	5to3	Duplication of 10 exons : out of frame	14766	NA	0	7	10	8
P-0040691-T01-IM6	SOMATIC	SEC16A	NOTCH1	9	9	139362059	139397549	Intron of SEC16A(-):524bp before exon 6	Intron of NOTCH1(-):84bp after exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3803-524:SEC16A_c.5167+85:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SEC16A:NOTCH1}	35490	NA	0	21	10	21
P-0040846-T01-IM6	SOMATIC	KMT2D	KMT2D	12	8	49443721	131599592	Exon 11 of KMT2D(-)	IGR: 193Kb before ADCY8(-)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(8;12)(q24.22;q13.12)(chr8:g.131599592::chr12:g.49443721)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	75	10	99
P-0040853-T01-IM6	SOMATIC	APC	APC	5	5	112157631	150062097	Exon 11 of APC(+)	IGR: 8Kb before RBM22(-)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1351:APC_chr5:g.150062097del	IMPPRECISE		MANUAL_OK	3to5	-	37904466	NA	0	7	0	7
P-0040882-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89353437	89357174	Intron of ANKRD11(-):843bp before exon 8	Exon 6 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.460_c.745-843del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3737	NA	0	36	10	39
P-0040973-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76882053	76939409	Intron of ATRX(-):6Kb before exon 20	Exon 9 of ATRX(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.1339_c.5135-6053del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	57356	NA	0	66	10	69
P-0040986-T01-IM6	SOMATIC	RECQL4	ARHGAP39	8	8	145738841	145772564	Exon 14 of RECQL4(-)	Exon 6 of ARHGAP39(-)	GRCh37	DUPLICATION	RECQL4 (NM_004260) - ARHGAP39 (NM_025251) rearrangement: c.2224:RECQL4_c.1906:ARHGAP39dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RECQL4:ARHGAP39}	33723	NA	0	6	10	6
P-0041027-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39869219	42875665	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4212:TMPRSS2_c.18+1068:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006446	NA	0	105	10	106
P-0041234-T01-IM6	SOMATIC	NRXN2	MEN1	11	11	64391256	64572414	Intron of NRXN2(-):706bp before exon 21	Intron of MEN1(-):91bp after exon 9	GRCh37	DUPLICATION	NRXN2 (NM_015080) - MEN1 (NM_000244) rearrangement: c.3848-706:NRXN2_c.1365+92:MEN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NRXN2:MEN1}	181158	NA	0	171	10	194
P-0041234-T01-IM6	SOMATIC	RECQL	RECQL	12	12	21624118	21628164	Intron of RECQL(-):86bp before exon 15	Intron of RECQL(-):237bp after exon 11	GRCh37	DELETION	RECQL (NM_032941) rearrangement: c.1216+238_c.1668-86del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4046	NA	0	6	10	11
P-0041234-T01-IM6	SOMATIC	EP300	EP300	22	14	41548197	107283261	Intron of EP300(+):12bp before exon 16	IGR: 24Kb before MIR5195(-)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(14;22)(q32.33;q13.2)(chr14:g.107283261::chr22:g.41548197)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	7	10	35
P-0041235-T01-IM6	SOMATIC	NHSL2	MED12	X	X	70357770	71250889	Exon 41 of MED12(+)	Intron of NHSL2(+):101Kb before exon 2	GRCh37	DUPLICATION	NHSL2 (NM_001013627) - MED12 (NM_005120) rearrangement: c.281-101040:NHSL2_c.6021:MED12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NHSL2:MED12}	893119	NA	0	7	10	7
P-0041326-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	37538498	42872376	Intron of DOPEY2(+):1Kb after exon 2	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2260:TMPRSS2_chr21:g.37538498del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5333878	NA	0	35	10	38
P-0041432-T01-IM6	SOMATIC	TP53	TP53	17	17	687501	7572936	Intron of RNMTL1(+):934bp after exon 2	Exon 11 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1173:TP53_chr17:g.687501del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	6885435	NA	0	122	10	130
P-0041466-T01-IM6	SOMATIC	TNK1	ERG	21	17	39795493	7286632	Intron of ERG(-):10bp before exon 3	Exon 3 of TNK1(+)	GRCh37	TRANSLOCATION	TNK1 (NM_001251902) - ERG (NM_182918) rearrangement: t(17;21)(p13.1;q22.2)(chr17:g.7286632::chr21:g.39795493)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TNK1:ERG}	0	NA	0	9	10	9
P-0041547-T01-IM6	SOMATIC	NOTCH2	NOTCH2	18	1	27255333	120462071	IGR: 624Kb before MIR302F(+)	Exon 31 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;18)(p12;q12.1)(chr1:g.120462071::chr18:g.27255333)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	53	10	53
P-0041584-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	40027774	42870352	3-UTR of ERG(-):6Kb after coding stop	Intron of TMPRSS2(-):236bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) (TMPRSS2 exon 1 fused to ERG exon 2-11): c.56-236:TMPRSS2_c.-150+5808:ERGdel	IMPPRECISE		MANUAL_OK	3to5	-	2842578	NA	0	23	0	24
P-0041639-T01-IM6	SOMATIC	RB1	RB1	13	13	48942524	51785980	Intron of RB1(+):138bp before exon 11	IGR: 10Kb before FAM124A(+)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1050-139:RB1_chr13:g.51785980inv	PRECISE		MANUAL_OK	5to5	-	2843456	NA	0	7	10	7
P-0041836-T01-IM6	SOMATIC	FGFR3	FGFR3	4	4	1804379	1806408	Intron of FGFR3(+):627bp after exon 7	Intron of FGFR3(+):142bp before exon 10	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.930+627_c.1267-143del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2029	NA	0	4	10	4
P-0041891-T02-IM6	SOMATIC	EWSR1	ATF1	22	12	29684261	51207275	Intron of EWSR1(+):333bp before exon 9	Intron of ATF1(+):517bp before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51207275::chr22:g.29684261)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	NA	0	40	10	40
P-0042035-T01-IM6	SOMATIC	PIK3R2	PIK3R2	19	19	18279746	18529061	Intron of PIK3R2(+):40bp after exon 15	Promoter of SSBP4(+):1Kb from tx start	GRCh37	INVERSION	PIK3R2 (NM_005027) rearrangement: c.1979+40:PIK3R2_chr19:g.18529061inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	249315	NA	0	11	10	11
P-0042036-T01-IM6	SOMATIC	BRAF	BRAF	7	7	114530920	140482248	IGR: 31Kb before MDFIC(+)	Intron of BRAF(-):572bp after exon 10	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1314+573:BRAF_chr7:g.114530920del	PRECISE		MANUAL_OK	3to5	-	25951328	NA	0	8	10	10
P-0042064-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41265757	41266391	Intron of CTNNB1(+):185bp after exon 2	Intron of CTNNB1(+):53bp before exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.13+185_c.242-54del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	634	NA	0	113	10	118
P-0042065-T01-IM6	SOMATIC	UPF1	UPF1	19	19	18943151	19928130	Exon 1 of UPF1(+)	Intron of ZNF506(-):4Kb after exon 1	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.133:UPF1_chr19:g.19928130inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {UPF1:ZNF506}	984979	NA	0	20	10	26
P-0042149-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49424794	89913914	Exon 40 of KMT2D(-)	Intron of POC1B(-):5Kb after exon 2	GRCh37	INVERSION	KMT2D (NM_003482) rearrangement: c.13553:KMT2D_chr12:g.89913914inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	40489120	NA	0	48	10	53
P-0042166-T01-IM6	SOMATIC	APC	APC	5	5	112154735	112157593	Exon 10 of APC(+)	Exon 11 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: c.1006_c.1313dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2858	NA	0	55	10	56
P-0042174-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39954054	42876470	3-UTR of ERG(-):80Kb after coding stop	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449)rearrangement: c.55+3407:TMPRSS2_ c.-48+2714:ERGdel	PRECISE		MANUAL_OK	3to5	-	2922416	NA	0	29	10	31
P-0042223-T01-IM6	SOMATIC	FUBP1	GIPC2	1	1	78429764	78536437	Exon 12 of FUBP1(-)	Intron of GIPC2(+):10Kb before exon 2	GRCh37	INVERSION	FUBP1 (NM_003902) - GIPC2 (NM_017655) rearrangement: c.1024:FUBP1_c.241-9922:GIPC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FUBP1:GIPC2}	106673	NA	0	25	10	27
P-0042223-T01-IM6	SOMATIC	TP53	TP53	17	17	7577139	7579765	Exon 8 of TP53(-)	Intron of TP53(-):44bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-44_c.799del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2626	NA	0	51	10	54
P-0042237-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	12011202	12028868	Exon 5 of MAP2K4(+)	Intron of MAP2K4(+):180bp after exon 8	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.609_c.891+180del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17666	NA	0	70	10	78
P-0042378-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39853572	42877942	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.55+1935:TMPRSS2_c.18+16715:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3024370	NA	0	16	10	20
P-0042393-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737184	1808709	Intron of TACC3(+):132bp after exon 7	Intron of FGFR3(+):48bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+48:FGFR3_c.1644+132:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71525	NA	0	335	10	400
P-0042507-T01-IM6	SOMATIC	WWTR1	WWTR1	3	3	149243857	149245145	Exon 6 of WWTR1(-)	Intron of WWTR1(-):477bp after exon 5	GRCh37	DELETION	WWTR1 (NM_001168280) rearrangement: c.905+478_c.961del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1288	NA	0	6	7	6
P-0042571-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684166	32417586	Intron of EWSR1(+):428bp before exon 9	Intron of WT1(-):216bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417586::chr22:g.29684166)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	81	10	81
P-0042577-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12029530	12037984	Intron of ETV6(+):7Kb after exon 5	Intron of ETV6(+):463bp after exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1009+6627_c.1152+463del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	8454	NA	0	3	8	3
P-0042907-T01-IM6	SOMATIC	EZH2	EZH2	7	7	148447872	148507396	Intron of CUL1(+):3Kb before exon 3	Intron of EZH2(-):28bp after exon 17	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.2029+29:EZH2_chr7:g.148447872del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	59524	NA	0	11	8	12
P-0042933-T01-IM6	SOMATIC	CDC73	CDC73	1	1	193121604	193269071	Intron of CDC73(+):30bp after exon 10	IGR: 5Kb before LINC01031(+)	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.972+30:CDC73_chr1:g.193269071del	PRECISE		MANUAL_OK	3to5	-	147467	NA	0	15	10	17
P-0042933-T01-IM6	SOMATIC	NPM1	NPM1	17	5	72559451	170817070	IGR: 17Kb before CD300LD(-)	Exon 2 of NPM1(+)	GRCh37	TRANSLOCATION	NPM1 (NM_002520) rearrangement: t(5;17)(q35.1;q25.1)(chr5:g.170817070::chr17:g.72559451)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	10
P-0042933-T01-IM6	SOMATIC	EP300	EP300	22	22	41507977	41574115	Intron of EP300(+):5Kb before exon 2	Exon 31 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.95-5214_c.6400del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	66138	NA	0	4	4	4
P-0042933-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41261218	41266451	5-UTR of CTNNB1(+):4Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.248:CTNNB1_chr3:g.41261218del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5233	NA	0	60	10	63
P-0043041-T01-IM6	SOMATIC	EML4	ALK	2	2	29446597	42524438	Intron of ALK(-):203bp before exon 20	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1782:EML4_c.3173-203:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077841	NA	0	58	10	58
P-0043077-T01-IM6	SOMATIC	NCOA4	RET	10	10	43611580	51583547	Intron of RET(+):451bp before exon 12	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.762+608:NCOA4_c.2137-452:RETdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7971967	NA	0	106	10	115
P-0043097-T01-IM6	SOMATIC	EGFR	ZNF713	7	7	55269400	55989893	Intron of EGFR(+):27bp before exon 26	Intron of ZNF713(+):961bp before exon 2	GRCh37	DELETION	EGFR (NM_005228) - ZNF713 (NM_182633) fusion: c.3115-28:EGFR_c.49-962:ZNF713del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EGFR:ZNF713}	720493	NA	0	161	10	179
P-0043253-T01-IM6	SOMATIC	FAT1	FAT1	4	4	186320655	187630510	Intron of ANKRD37(+):68bp before exon 4	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.472:FAT1_chr4:g.186320655del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1309855	NA	0	30	10	31
P-0043290-T01-IM6	SOMATIC	BAI3	CDKN2A	9	6	21968952	69608821	Intron of CDKN2A(-):711bp before exon 3	Intron of BAI3(+):32Kb before exon 4	GRCh37	TRANSLOCATION	BAI3 (NM_001704) - CDKN2A (NM_000077) rearrangement: t(6;9)(q12;p21.3)(chr6:g.69608821::chr9:g.21968952)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {BAI3:CDKN2A}	0	NA	0	14	10	14
P-0043334-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46512121	98035591	Intron of PIK3R3(-):101bp after exon 8	Intron of DPYD(-):4Kb after exon 11	GRCh37	INVERSION	PIK3R3 (NM_003629) rearrangement: c.1016+102:PIK3R3_chr1:g.98035591inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	51523470	NA	0	33	10	34
P-0043334-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33793080	39308775	Exon 1 of CEBPA(-)	Intron of ECH1(-):560bp before exon 4	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.241:CEBPA_chr19:g.39308775inv	PRECISE		MANUAL_OK	3to3	-	5515695	NA	0	39	10	39
P-0043417-T01-IM6	SOMATIC	TP53	TP53	17	17	7578134	7579711	Intron of TP53(-):42bp after exon 6	Exon 3 of TP53(-)	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.85_c.672+43inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	1577	NA	0	113	0	382
P-0043417-T01-IM6	SOMATIC	CTC1	AURKB	17	17	8108189	8148112	Exon 9 of AURKB(-)	Intron of CTC1(-):2Kb before exon 2	GRCh37	DELETION	CTC1 (NM_025099) - AURKB (NM_004217) rearrangement: c.34-1646:CTC1_c.1035:AURKBdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CTC1:AURKB}	39923	NA	0	29	10	29
P-0043491-T01-IM6	SOMATIC	BCL2	BCL2	18	18	28860403	60850062	IGR: 38Kb before DSG1(+)	Intron of BCL2(-):54Kb before exon 3	GRCh37	INVERSION	BCL2 (NM_000633) rearrangement: c.586-54070:BCL2_chr18:g.28860403inv	IMPPRECISE		MANUAL_OK	3to3	-	31989659	NA	0	5	0	5
P-0043525-T01-IM6	SOMATIC	EGFR	EGFR	7	7	54795701	55223105	IGR: 24Kb before SEC61G(-)	Intron of EGFR(+):417bp before exon 8	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.890-418:EGFR_chr7:g.54795701inv	PRECISE		MANUAL_OK	5to5	-	427404	NA	0	78	10	111
P-0043525-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268341	55270670	Intron of EGFR(+):235bp after exon 24	Intron of EGFR(+):352bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+235_c.3271+352del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2329	NA	0	40	10	103
P-0043525-T01-IM6	SOMATIC	EGFR	SEPT14	7	7	55268859	55864592	Intron of EGFR(+):21bp before exon 25	Intron of SEPT14(-):807bp before exon 10	GRCh37	INVERSION	EGFR (NM_005228) - SEPT14 (NM_207366) fusion: c.2947-22:EGFR_c.1120-807:SEPT14inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EGFR:SEPT14}	595733	NA	0	177	10	202
P-0043565-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	15	42874936	37245374	Intron of TMPRSS2(-):5Kb before exon 2	Intron of MEIS2(-):3Kb before exon 9	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(15;21)(q14;q22.3)(chr15:g.37245374::chr21:g.42874936)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	63	10	72
P-0043568-T01-IM6	SOMATIC	KDM6A	KDM6A	X	X	44896090	44896991	Intron of KDM6A(+):809bp before exon 8	Intron of KDM6A(+):57bp after exon 8	GRCh37	DUPLICATION	KDM6A (NM_021140) rearrangement: c.620-810_c.654+57dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	901	NA	0	20	10	20
P-0043571-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186505617	186552349	Exon 10 of EIF4A2(+)	IGR: 8Kb before ADIPOQ(+)	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.1025:EIF4A2_chr3:g.186552349del	PRECISE		MANUAL_OK	3to5	-	46732	NA	0	13	10	13
P-0043602-T02-IM6	SOMATIC	EWSR1	EWSR1	22	12	29685325	54781173	Intron of EWSR1(+):550bp after exon 9	Intron of ZNF385A(-):3Kb before exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(12;22)(q13.13;q12.2)(chr12:g.54781173::chr22:g.29685325)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	29	10	32
P-0043634-T01-IM6	SOMATIC	ERCC2	ERCC2	19	19	45872261	45882309	Intron of ERCC2(-):11bp before exon 4	Promoter of PPP1R13L(-):582bp from tx start	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.184-11:ERCC2_chr19:g.45882309inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10048	NA	0	9	10	11
P-0043634-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38162273	38162845	Exon 14 of WHSC1L1(-)	Exon 13 of WHSC1L1(-)	GRCh37	DELETION	WHSC1L1 (NM_023034) rearrangement: c.2361_c.2443del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	572	NA	0	20	0	24
P-0043662-T01-IM6	SOMATIC	PTPN11	PTPN11	12	12	112910833	112936813	Exon 7 of PTPN11(+)	Intron of PTPN11(+):3Kb before exon 14	GRCh37	DUPLICATION	PTPN11 (NM_002834) rearrangement: c.842_c.1600-3135dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	25980	NA	0	32	10	32
P-0043662-T01-IM6	SOMATIC	MLH1	MLH1	3	3	37044051	37048709	Intron of MLH1(+):2Kb after exon 3	Intron of MLH1(+):155bp after exon 5	GRCh37	DUPLICATION	MLH1 (NM_000249) rearrangement: c.306+1507_c.453+155dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	4658	NA	0	7	5	6
P-0043825-T01-IM6	SOMATIC	RUNX1	TBX3	21	12	36191404	115118933	Intron of RUNX1(-):15Kb after exon 7	Exon 2 of TBX3(-)	GRCh37	TRANSLOCATION	RUNX1 (NM_001754) - TBX3 (NM_016569) rearrangement: t(12;21)(q24.21;q22.12)(chr12:g.115118933::chr21:g.36191404)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RUNX1:TBX3}	0	NA	0	40	10	42
P-0043838-T01-IM6	SOMATIC	SLC5A5	PIK3R2	19	19	17990851	18277806	Intron of SLC5A5(+):822bp before exon 8	Intron of PIK3R2(+):133bp before exon 13	GRCh37	DELETION	SLC5A5 (NM_000453) - PIK3R2 (NM_005027) rearrangement: c.970-823:SLC5A5_c.1560-134:PIK3R2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SLC5A5:PIK3R2}	286955	NA	0	14	10	16
P-0043870-T01-IM6	SOMATIC	BRIP1	BRIP1	17	17	59109530	59885907	Intron of BCAS3(+):2Kb before exon 18	Exon 7 of BRIP1(-)	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.839:BRIP1_chr17:g.59109530del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	776377	NA	0	2	5	2
P-0043910-T01-IM6	SOMATIC	FBXL20	CDK12	17	17	37536979	37682285	Intron of FBXL20(-):21Kb after exon 1	Exon 13 of CDK12(+)	GRCh37	INVERSION	FBXL20 (NM_032875) - CDK12 (NM_016507) rearrangement: c.42+20635:FBXL20_c.3476:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FBXL20:CDK12}	145306	NA	0	52	10	64
P-0043953-T01-IM6	SOMATIC	TFAP2E	CSF3R	1	1	36058984	36935436	Intron of TFAP2E(+):1Kb before exon 7	Exon 11 of CSF3R(-)	GRCh37	INVERSION	TFAP2E (NM_178548) - CSF3R (NM_000760) rearrangement: c.1047-1011:TFAP2E_c.1291:CSF3Rinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TFAP2E:CSF3R}	876452	NA	0	6	10	6
P-0043953-T01-IM6	SOMATIC	RAD54L	RAD54L	1	1	46726727	46729418	Intron of RAD54L(+):40bp after exon 8	Intron of RAD54L(+):2Kb after exon 9	GRCh37	INVERSION	RAD54L (NM_001142548) rearrangement: c.766+40_c.891+2361inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2691	NA	0	6	7	6
P-0043953-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	1980596	4885490	Exon 22 of WHSC1(+)	IGR: 24Kb before MSX1(+)	GRCh37	INVERSION	WHSC1 (NM_001042424) rearrangement: c.4058:WHSC1_chr4:g.4885490inv	IMPPRECISE		MANUAL_OK	3to3	-	2904894	NA	0	5	0	5
P-0044041-T01-IM6	SOMATIC	NF1	NF1	17	3	29548812	54146314	Intron of NF1(+):55bp before exon 15	IGR: 10Kb before CACNA2D3(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(3;17)(p21.1;q11.2)(chr3:g.54146314::chr17:g.29548812)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	22	10	27
P-0044041-T01-IM6	SOMATIC	ALK	ALK	2	2	29438780	29456537	Intron of ALK(-):2Kb before exon 24	Exon 14 of ALK(-)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.2381_c.3646-1833del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17757	NA	0	22	10	22
P-0044041-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61749777	61780951	Exon 4 of XPO1(-)	IGR: 76Kb before XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.270:XPO1_chr2:g.61780951del	PRECISE		MANUAL_OK	3to5	-	31174	NA	0	17	10	18
P-0044144-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41266034	41266653	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.31_c.450del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	619	NA	0	32	10	33
P-0044210-T01-IM6	SOMATIC	B2M	B2M	15	15	45007717	45009747	Exon 2 of B2M(+)	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.164:B2M_chr15:g.45009747del	PRECISE		MANUAL_OK	3to5	-	2030	NA	0	7	10	7
P-0044228-T02-IM6	SOMATIC	APC	APC	5	5	112175791	112179986	Exon 16 of APC(+)	3-UTR of APC(+):89Kb after coding stop	GRCh37	DELETION	APC (NM_000038) rearrangement: c.4500:APC_chr5:g.112179986del	PRECISE		MANUAL_OK	3to5	-	4195	NA	0	24	10	25
P-0044296-T01-IM6	SOMATIC	TP53	TP53	17	17	7573260	7577362	Intron of TP53(-):252bp before exon 11	Intron of TP53(-):136bp after exon 7	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.782+137_c.1101-252del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	4102	NA	0	28	10	29
P-0044301-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	22	24135872	24139346	Exon 3 of SMARCB1(+)	Intron of SMARCB1(+):3Kb after exon 3	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.359_c.362+3471del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3474	NA	0	2	10	4
P-0044319-T01-IM6	SOMATIC	ARAF	ARAF	X	X	47424074	126786845	Intron of ARAF(+):121bp before exon 4	IGR: 398Kb before ACTRT1(-)	GRCh37	DELETION	ARAF (NM_001654) rearrangement: c.201-122:ARAF_chrX:g.126786845del	PRECISE		MANUAL_OK	3to5	-	79362771	NA	0	5	10	5
P-0044346-T01-IM6	SOMATIC	INPP4A	INPP4A	3	2	174056638	99182038	IGR: 428Kb before NLGN1-AS1(-)	Intron of INPP4A(+):64bp before exon 21	GRCh37	TRANSLOCATION	INPP4A (NM_001134224) rearrangement: t(2;3)(q11.2;q26.31)(chr2:g.99182038::chr3:g.174056638)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	14	10	14
P-0044386-T01-IM6	SOMATIC	RB1	RB1	13	13	40848925	49047376	IGR: 72Kb before LINC00598(-)	Intron of RB1(+):119bp before exon 24	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.2490-120:RB1_chr13:g.40848925inv	PRECISE		MANUAL_OK	5to5	-	8198451	NA	0	17	10	17
P-0044391-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27106911	27109427	Exon 20 of ARID1A(+)	Promoter of ARID1A(+):87Kb from tx start	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.6522:ARID1A_chr1:g.27109427del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2516	NA	0	7	9	8
P-0044391-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72923669	72924350	Exon 4 of ZFHX3(-)	Intron of ZFHX3(-):489bp before exon 4	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3217-489_c.3409del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	681	NA	0	13	10	12
P-0044391-T01-IM6	SOMATIC	ARID1A	ARID1A	4	1	163326089	27023724	IGR: 382Kb before LOC101928052(+)	Exon 1 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;4)(p36.11;q32.2)(chr1:g.27023724::chr4:g.163326089)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0044393-T01-IM6	SOMATIC	NOTCH1	PNPLA7	9	9	139399077	140424659	Intron of NOTCH1(-):47bp after exon 26	Intron of PNPLA7(-):7Kb before exon 9	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - PNPLA7 (NM_001098537) rearrangement: c.5018+48:NOTCH1_c.748-7350:PNPLA7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH1:PNPLA7}	1025582	NA	0	7	10	7
P-0044499-T01-IM6	SOMATIC	CBL	CBL	11	11	119148720	119150546	Intron of CBL(+):155bp before exon 8	Intron of CBL(+):1Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1096-156_c.1431+1123del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1826	NA	0	9	10	9
P-0044499-T01-IM6	SOMATIC	POLE	POLE	12	12	131958142	133244094	IGR: 126Kb before LOC338797(+)	Exon 20 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.2314:POLE_chr12:g.131958142del	PRECISE		MANUAL_OK	3to5	-	1285952	NA	0	9	10	9
P-0044499-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	14	43720289	38880416	Exon 18 of TP53BP1(-)	IGR: 157Kb before CLEC14A(-)	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) rearrangement: t(14;15)(q21.1;q15.3)(chr14:g.38880416::chr15:g.43720289)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	17	10	17
P-0044499-T01-IM6	SOMATIC	RNF43	RNF43	17	17	56439919	56441823	Exon 6 of RNF43(-)	Intron of RNF43(-):862bp before exon 4	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.376-862_c.673del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1904	NA	0	28	10	29
P-0044499-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	12	31383141	130228060	Intron of DNMT3B(+):73bp before exon 11	Intron of TMEM132D(-):43Kb before exon 2	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(12;20)(q24.33;q11.21)(chr12:g.130228060::chr20:g.31383141)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	10	8
P-0044549-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40480827	40491507	Intron of STAT3(-):600bp after exon 14	Intron of STAT3(-):80bp before exon 5	GRCh37	DUPLICATION	STAT3 (NM_139276) rearrangement: c.373-80_c.1281+601dup	PRECISE		MANUAL_OK	5to3	Duplication of 10 exons : in frame	10680	NA	0	54	10	92
P-0044607-T01-IM6	SOMATIC	ATR	NAV3	12	3	78469330	142281699	Intron of NAV3(+):16Kb after exon 12	Exon 4 of ATR(-)	GRCh37	TRANSLOCATION	ATR (NM_001184) - NAV3 (NM_014903) rearrangement: t(3;12)(q23;q21.2)(chr3:g.142281699::chr12:g.78469330)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ATR:NAV3}	0	NA	0	74	10	112
P-0044607-T01-IM6	SOMATIC	NTRK2	PRUNE2	9	9	79424884	87480122	Intron of PRUNE2(-):14Kb after exon 6	Intron of NTRK2(+):2Kb before exon 16	GRCh37	INVERSION	NTRK2 (NM_006180) - PRUNE2 (NM_015225) rearrangement: c.1445-2036:NTRK2_c.756+13664:PRUNE2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NTRK2:PRUNE2}	8055238	NA	0	6	10	6
P-0044698-T01-IM6	SOMATIC	CSF3R	CSF3R	1	1	36932220	37140302	Exon 17 of CSF3R(-)	IGR: 121Kb before GRIK3(-)	GRCh37	INVERSION	CSF3R (NM_000760) rearrangement: c.2249:CSF3R_chr1:g.37140302inv	PRECISE		MANUAL_OK	5to5	-	208082	NA	0	12	10	14
P-0044698-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157511053	157695561	Intron of ARID1B(+):118bp before exon 15	IGR: 14Kb before TMEM242(-)	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.3690-119:ARID1B_chr6:g.157695561inv	PRECISE		MANUAL_OK	5to5	-	184508	NA	0	2	4	2
P-0044811-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39816407	42875267	Intron of ERG(-):919bp after exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4610:TMPRSS2_c.236+920:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3058860	NA	0	3	7	3
P-0044819-T01-IM6	SOMATIC	PPAP2A	BRAF	7	5	140482123	54789192	Intron of BRAF(-):630bp before exon 11	Intron of PPAP2A(-):18Kb before exon 2	GRCh37	TRANSLOCATION	PPAP2A (NM_176895) - BRAF (NM_004333) fusion: t(5;7)(q11.2;q34)(chr5:g.54789192::chr7:g.140482123)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PPAP2A:BRAF}	0	NA	0	38	10	40
P-0044843-T01-IM6	SOMATIC	RYBP	RYBP	3	3	72025951	72495717	IGR: 59Kb before LINC00877(-)	Exon 1 of RYBP(-)	GRCh37	DELETION	RYBP (NM_012234) rearrangement: c.58:RYBP_chr3:g.72025951del	PRECISE		MANUAL_OK	3to5	-	469766	NA	0	23	10	33
P-0044968-T01-IM6	SOMATIC	AIG1	TNFAIP3	6	6	138199576	143635473	Exon 7 of TNFAIP3(+)	Intron of AIG1(+):19Kb before exon 5	GRCh37	DUPLICATION	AIG1 (NM_016108) - TNFAIP3 (NM_006290) rearrangement: c.516-18946:AIG1_c.994:TNFAIP3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AIG1:TNFAIP3}	5435897	NA	0	9	10	9
P-0045864-T01-IM6	SOMATIC	PAX8	PAX8	9	2	82446542	113990261	5-UTR of LINC01507(+):203Kb before coding start	Intron of PAX8(-):3Kb after exon 9	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(2;9)(q13;q21.31)(chr2:g.113990261::chr9:g.82446542)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	96	10	100
P-0045966-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8471076	8479950	Exon 31 of PTPRD(-)	Intron of PTPRD(-):4Kb after exon 30	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.3413+4169_c.3423del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8874	NA	0	5	0	5
P-0045966-T01-IM6	SOMATIC	AMER1	AMER1	X	X	63412434	63740331	Exon 2 of AMER1(-)	IGR: 252Kb before MTMR8(-)	GRCh37	DELETION	AMER1 (NM_152424) rearrangement: c.733:AMER1_chrX:g.63740331del	PRECISE		MANUAL_OK	3to5	-	327897	NA	0	14	10	14
P-0046465-T01-IM6	SOMATIC	ABL1	ABL1	9	9	133638685	133730167	Intron of ABL1(+):49Kb after exon 1	Intron of ABL1(+):20bp before exon 3	GRCh37	DELETION	ABL1 (NM_005157) rearrangement: c.254-21:ABL1_chr9:g.133638685del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	91482	NA	0	6	5	6
P-0047109-T02-IM6	SOMATIC	EWSR1	FLI1	22	11	29683718	128666244	Intron of EWSR1(+):595bp after exon 8	Intron of FLI1(+):9Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128666244::chr22:g.29683718)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	9	10	9
P-0047109-T02-IM6	SOMATIC	EMID1	EWSR1	22	22	29652470	29684365	Intron of EMID1(+):2Kb after exon 14	Intron of EWSR1(+):229bp before exon 9	GRCh37	DELETION	EMID1 (NM_133455) - EWSR1 (NM_013986) rearrangement: c.1204+2194:EMID1_c.812-230:EWSR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EMID1:EWSR1}	31895	NA	0	14	10	17
P-0047316-T01-IM6	SOMATIC	ERG	ERG	21	17	39870294	7965049	Exon 1 of ERG(-)	IGR: 11Kb before ALOX12B(-)	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(17;21)(p13.1;q22.2)(chr17:g.7965049::chr21:g.39870294)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	5	10	5
P-0047730-T02-IM6	SOMATIC	ZNF532	MALT1	18	18	56339011	56647463	Exon 1 of MALT1(+)	Intron of ZNF532(+):1Kb after exon 9	GRCh37	DUPLICATION	ZNF532 (NM_018181) - MALT1 (NM_006785) rearrangement: c.3263+1064:ZNF532_c.136:MALT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZNF532:MALT1}	308452	NA	0	36	10	38
P-0051068-T01-IM6	SOMATIC	DIAPH2	ALK	X	2	96713620	29447566	Intron of DIAPH2(+):29Kb after exon 26	Intron of ALK(-):760bp after exon 19	GRCh37	TRANSLOCATION	DIAPH2 (NM_006729) - ALK (NM_004304) fusion: t(2;X)(p23.2;q21.33)(chr2:g.29447566::chrX:g.96713620)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {DIAPH2:ALK}	0	NA	0	69	10	67
P-0051558-T01-IM6	SOMATIC	FGFR2	TTC28	22	10	28605071	123243158	Intron of TTC28(-):45Kb before exon 6	Intron of FGFR2(-):53bp after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - TTC28 (NM_001145418) fusion: t(10;22)(q26.13;q12.1)(chr10:g.123243158::chr22:g.28605071)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:TTC28}	0	NA	0	174	10	176
P-0053329-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39823286	42866336	Intron of ERG(-):6Kb before exon 2	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.296:TMPRSS2_c.19-5742:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3043050	NA	0	33	10	40
P-0056765-T01-IM7	SOMATIC	FXR2	TP53	17	17	7517294	7578516	Intron of FXR2(-):475bp after exon 1	Exon 5 of TP53(-)	GRCh37	DUPLICATION	FXR2 (NM_004860) - TP53 (NM_000546) rearrangement: c.81+476:FXR2_c.414:TP53dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FXR2:TP53}	61222	NA	0	2	3	2
P-0061297-T03-IM7	SOMATIC	EML4	ALK	2	2	29448375	42523587	Exon 19 of ALK(-)	Intron of EML4(+):931bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+931:EML4_c.3124:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13075212	NA	0	29	10	28
P-0061760-T01-IM7	SOMATIC	SDHA	PLEKHG4B	5	5	159010	256437	Intron of PLEKHG4B(+):2Kb after exon 9	Intron of SDHA(+):11bp before exon 15	GRCh37	DUPLICATION	SDHA (NM_004168) - PLEKHG4B (NM_052909) rearrangement: c.1909-12:SDHA_c.1419+1984:PLEKHG4Bdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDHA:PLEKHG4B}	97427	NA	0	10	10	14
P-0009202-T02-IM7	SOMATIC	NBN	NBN	8	8	90958413	90972713	Exon 13 of NBN(-)	Intron of NBN(-):2Kb before exon 9	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.995-1631_c.2025del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14300	NA	0	15	10	15
P-0023746-T03-IM7	SOMATIC	PBRM1	PBRM1	3	3	52592642	52594186	Intron of PBRM1(-):3Kb after exon 26	Intron of PBRM1(-):2Kb after exon 26	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.4132+1597_c.4132+3141del	PRECISE		MANUAL_OK	3to5	Deletion within intron	1544	NA	0	5	9	5
P-0023746-T03-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974749	22278766	Exon 1 of CDKN2A(-)	IGR: 168Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3542:CDKN2A_chr9:g.22278766del	PRECISE		MANUAL_OK	3to5	-	304017	NA	0	144	10	155
P-0037044-T05-IM7	SOMATIC	NTRK3	NTRK3	15	3	88476548	192212899	Intron of NTRK3(-):133bp before exon 16	Intron of FGF12(-):135Kb before exon 3	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(3;15)(q28;q25.3)(chr3:g.192212899::chr15:g.88476548)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	43	10	49
P-0037044-T05-IM7	SOMATIC	CARD11	CARD11	15	7	95532045	2983757	IGR: 133Kb before LOC440311(+)	Intron of CARD11(-):88bp after exon 5	GRCh37	TRANSLOCATION	CARD11 (NM_032415) rearrangement: t(7;15)(p22.2;q26.2)(chr7:g.2983757::chr15:g.95532045)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	23	0	23
P-0037044-T05-IM7	SOMATIC	NCOR1	NCOR1	17	17	15978905	26701849	Exon 27 of NCOR1(-)	Intron of SARM1(+):2Kb after exon 2	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.3613:NCOR1_chr17:g.26701849del	PRECISE		MANUAL_OK	3to5	-	10722944	NA	1	31	10	30
P-0060879-T02-IM7	SOMATIC	SETDB1	SETDB1	1	1	150926443	150933416	Intron of SETDB1(+):2Kb after exon 14	Exon 16 of SETDB1(+)	GRCh37	DELETION	SETDB1 (NM_001145415) rearrangement: c.2330+2486_c.2878del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6973	NA	0	9	10	14
P-0060879-T02-IM7	SOMATIC	EZH1	EZH1	17	3	40864352	12370877	Exon 12 of EZH1(-)	5-UTR of PPARG(+):50Kb before coding start	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(3;17)(p25.2;q21.2)(chr3:g.12370877::chr17:g.40864352)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PPARG:EZH1}	0	NA	0	10	10	10
P-0060879-T02-IM7	SOMATIC	EZH1	EZH1	20	17	32413844	40871243	Intron of CHMP4B(+):14Kb after exon 1	Intron of EZH1(-):18bp before exon 8	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(17;20)(q21.2;q11.22)(chr17:g.40871243::chr20:g.32413844)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	6	10	6
P-0060879-T02-IM7	SOMATIC	FGFR3	TACC3	4	4	1741188	1808945	Intron of TACC3(+):240bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2377:FGFR3_c.1942-241:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	67757	NA	0	2	7	2
P-0061632-T02-IM7	SOMATIC	FANCA	FANCA	16	16	89848524	89851424	Intron of FANCA(-):742bp after exon 17	Intron of FANCA(-):52bp before exon 15	GRCh37	DUPLICATION	FANCA (NM_000135) rearrangement: c.1360-52_c.1626+743dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	2900	NA	0	18	10	28
P-0061632-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52620337	52626707	Intron of PBRM1(-):103bp after exon 21	Intron of PBRM1(-):3Kb before exon 19	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.2780-3436_c.3312+104dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	6370	NA	0	37	10	38
P-0061783-T01-IM7	SOMATIC	FGFR2	FOXP1	10	3	123241483	71192573	Intron of FGFR2(-):2Kb after exon 17	Intron of FOXP1(-):31Kb before exon 3	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - FOXP1 (NM_001244814) fusion: t(3;10)(p13;q26.13)(chr3:g.71192573::chr10:g.123241483)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:FOXP1}	0	NA	0	10	10	10
P-0061783-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3822298	3832706	Intron of CREBBP(-):1Kb before exon 14	Exon 6 of CREBBP(-)	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.1552_c.2464-1311dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10408	NA	0	33	10	33
P-0061784-T01-IM7	SOMATIC	RXRA	RXRA	9	9	137308876	137314159	Intron of RXRA(+):127bp before exon 5	Intron of RXRA(+):508bp after exon 6	GRCh37	DUPLICATION	RXRA (NM_002957) rearrangement: c.611-128_c.910+508dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	5283	NA	0	5	6	5
P-0061791-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971089	22234849	Exon 2 of CDKN2A(-)	IGR: 212Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.312:CDKN2A_chr9:g.22234849del	IMPPRECISE		MANUAL_OK	3to5	-	263760	NA	0	10	0	17
P-0061796-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21994101	22050328	Intron of CDKN2A(-):36bp after exon 1	5-UTR of CDKN2B-AS1(+):71Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.193+37:CDKN2A_chr9:g.22050328del	PRECISE		MANUAL_OK	3to5	-	56227	NA	0	10	10	10
P-0061798-T01-IM7	SOMATIC	LRCH3	RAF1	3	3	12645693	197565675	Exon 7 of RAF1(-)	Intron of LRCH3(+):516bp before exon 10	GRCh37	INVERSION	LRCH3 (NM_032773) - RAF1 (NM_002880) rearrangement: c.1252-517:LRCH3_c.776:RAF1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LRCH3:RAF1}	184919982	NA	0	86	10	86
P-0061799-T01-IM7	SOMATIC	NEGR1	NEGR1	1	1	71030137	72076713	IGR: 142Kb before LOC101927244(+)	Exon 5 of NEGR1(-)	GRCh37	INVERSION	NEGR1 (NM_173808) rearrangement: c.784:NEGR1_chr1:g.71030137inv	PRECISE		MANUAL_OK	3to3	-	1046576	NA	0	4	4	4
P-0061804-T01-IM7	SOMATIC	ROS1	ROS1	17	6	7586142	117652132	5-UTR of TP53(-):13Kb before coding start	Intron of ROS1(-):2Kb before exon 32	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(6;17)(q22.1;p13.1)(chr6:g.117652132::chr17:g.7586142)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {ROS1:TP53}	0	NA	0	45	10	49
P-0061856-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21865496	22008708	3-UTR of MTAP(+):63Kb after coding stop	Intron of CDKN2B(-):88bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+89:CDKN2B_chr9:g.21865496del	PRECISE		MANUAL_OK	3to5	-	143212	NA	0	235	10	239
P-0061860-T01-IM7	SOMATIC	EMR1	PIK3R2	19	19	6923549	18273297	Intron of EMR1(+):1Kb before exon 14	Exon 9 of PIK3R2(+)	GRCh37	DELETION	EMR1 (NM_001974) - PIK3R2 (NM_005027) rearrangement: c.1792-1140:EMR1_c.1090:PIK3R2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EMR1:PIK3R2}	11349748	NA	0	10	10	10
P-0061864-T01-IM7	SOMATIC	HIVEP3	CDC73	1	1	41980466	193094325	Intron of HIVEP3(-):1Kb before exon 8	Exon 2 of CDC73(+)	GRCh37	INVERSION	HIVEP3 (NM_001127714) - CDC73 (NM_024529) rearrangement: c.5471-1045:HIVEP3_c.215:CDC73inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {HIVEP3:CDC73}	151113859	NA	0	39	10	43
P-0061864-T01-IM7	SOMATIC	ESR1	ESR1	6	6	152129007	152324488	5-UTR of ESR1(+):40bp before coding start	Intron of ESR1(+):8Kb before exon 6	GRCh37	DELETION	ESR1 (NM_001122740) rearrangement: c.1097-8303:ESR1_chr6:g.152129007del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	195481	NA	0	38	10	37
P-0061867-T02-IM7	SOMATIC	STK11	STK11	19	19	1216831	1221916	Intron of STK11(+):2Kb before exon 2	Intron of STK11(+):31bp before exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-1585_c.863-32del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	5085	NA	0	18	0	19
P-0055104-T03-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41253076	41266326	5-UTR of CTNNB1(+):12Kb before coding start	Intron of CTNNB1(+):82bp after exon 3	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.241+82:CTNNB1_chr3:g.41253076del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13250	NA	0	44	10	45
P-0059355-T02-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56157413	56160781	Intron of MAP3K1(+):2Kb after exon 3	Intron of MAP3K1(+):20bp after exon 4	GRCh37	INVERSION	MAP3K1 (NM_005921) rearrangement: c.834+1671_c.1035+20inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3368	NA	0	4	10	6
P-0061894-T01-IM7	SOMATIC	RB1	RB1	13	13	48954773	48955567	Intron of RB1(+):396bp after exon 16	Exon 17 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1498+396_c.1683del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	794	NA	0	42	0	44
P-0061899-T01-IM7	SOMATIC	PTEN	PTEN	15	10	77741342	89653872	5-UTR of HMG20A(+):9Kb before coding start	Intron of PTEN(+):6bp after exon 2	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(10;15)(q23.31;q24.3)(chr10:g.89653872::chr15:g.77741342)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	10	8
P-0061899-T01-IM7	SOMATIC	NF1	NF1	17	17	29460122	29553612	Intron of NF1(+):23Kb before exon 2	Exon 18 of NF1(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.61-22879_c.2161inv	PRECISE		MANUAL_OK	5to5	-	93490	NA	0	15	10	25
P-0061899-T01-IM7	SOMATIC	BRD4	NOTCH3	19	19	15302995	15379643	Exon 4 of NOTCH3(-)	Intron of BRD4(-):72bp after exon 3	GRCh37	DELETION	BRD4 (NM_058243) - NOTCH3 (NM_000435) rearrangement: c.423+73:BRD4_c.455:NOTCH3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BRD4:NOTCH3}	76648	NA	0	32	10	32
P-0061899-T01-IM7	SOMATIC	RAF1	RAF1	3	3	12627308	12667835	Intron of RAF1(-):10bp before exon 14	5-UTR of RAF1(-):42Kb before coding start	GRCh37	DELETION	RAF1 (NM_002880) rearrangement: c.1418-10:RAF1_chr3:g.12667835del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	40527	NA	0	7	10	8
P-0061902-T01-IM7	SOMATIC	ASXL1	TM9SF4	20	20	30749431	31024346	Intron of TM9SF4(+):263bp after exon 17	Exon 12 of ASXL1(+)	GRCh37	DUPLICATION	ASXL1 (NM_015338) - TM9SF4 (NM_014742) rearrangement: c.3831:ASXL1_c.1779+263:TM9SF4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ASXL1:TM9SF4}	274915	NA	0	28	10	29
P-0061907-T01-IM7	SOMATIC	AKT3	ADSS	1	1	243859025	244587736	Intron of AKT3(-):7bp before exon 2	Intron of ADSS(-):47bp before exon 5	GRCh37	DUPLICATION	AKT3 (NM_005465) - ADSS (NM_001126) rearrangement: c.47-7:AKT3_c.407-47:ADSSdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {AKT3:ADSS}	728711	NA	0	13	10	13
P-0061907-T01-IM7	SOMATIC	MLH1	MLH1	3	3	37036059	83382611	Intron of MLH1(+):905bp after exon 1	IGR: 1Mb before LINC00971(-)	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.116+905:MLH1_chr3:g.83382611del	PRECISE		MANUAL_OK	3to5	-	46346552	NA	0	5	10	5
P-0061915-T01-IM7	SOMATIC	JUN	JUN	1	1	59248042	59262238	Exon 1 of JUN(-)	5-UTR of LINC01135(+):103Kb before coding start	GRCh37	DELETION	JUN (NM_002228) rearrangement: c.701:JUN_chr1:g.59262238del	PRECISE		MANUAL_OK	3to5	-	14196	NA	0	24	10	24
P-0061915-T01-IM7	SOMATIC	TP53	TP53	17	17	7576015	7579188	Intron of TP53(-):837bp after exon 9	Intron of TP53(-):123bp after exon 4	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.375+124_c.993+838inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	3173	NA	0	17	0	17
P-0004941-T03-IM6	SOMATIC	ETV6	ETV6	12	12	12002515	12009831	Intron of ETV6(+):4Kb before exon 4	Intron of ETV6(+):3Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.329-3846_c.463+3336dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	7316	NA	0	6	10	6
P-0005459-T02-IM6	SOMATIC	ATR	ATR	13	3	20695257	142279020	IGR: 17Kb before GJA3(-)	Intron of ATR(-):84bp after exon 6	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;13)(q23;q12.11)(chr3:g.142279020::chr13:g.20695257)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	19	10	19
P-0005459-T02-IM6	SOMATIC	TMPRSS2	DSCAM	21	21	41501891	42867910	Intron of DSCAM(-):4Kb after exon 19	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - DSCAM (NM_001389) rearrangement: c.127-1405:TMPRSS2_c.3562+3890:DSCAMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:DSCAM}	1366019	NA	0	30	10	168
P-0006847-T01-IM5	SOMATIC	PGR	PGR	11	11	58736058	100999333	IGR: 25Kb before GLYATL1(+)	Exon 1 of PGR(-)	GRCh37	INVERSION	PGR (NM_000926) Rearrangement :  c.469_chr11:g.58736058inv	PRECISE		MANUAL_OK	5to5	-	42263275	NA	0	14	75	14
P-0008404-T03-IM6	SOMATIC	MSH2	MSH2	2	2	47683571	47693674	Intron of MSH2(+):7Kb before exon 9	Intron of MSH2(+):122bp before exon 10	GRCh37	DELETION	MSH2 (NM_000251) rearrangement: c.1387-6599_c.1511-123del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	10103	NA	0	6	4	6
P-0009524-T01-IM5	SOMATIC	AXL	HNRNPUL1	19	19	41748844	41793119	Exon 10 of AXL(+)	Intron of HNRNPUL1(+): 5Kb before exon 8	GRCh37	DELETION	AXL (NM_021913) - HNRNPUL1 (NM_007040) rearrangement: c.1369:AXL_c.1000-5031:HNRNPUL1del	PRECISE		MANUAL_OK	3to5	Protein fusion: mid-exon (AXL-HNRNPUL1)	44275	NA	0	15	18	14
P-0009524-T01-IM5	SOMATIC	PTPRD	PTPRD	9	9	8636697	8673440	Intron of PTPRD(-): 2bp after exon 13	Intron of PTPRD(-): 37Kb before exon 13	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.65-36596_c.210+2del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon: out of frame	36743	NA	0	15	17	15
P-0009748-T03-IM6	SOMATIC	ERBB2	SHC1	17	1	37883375	154946879	Intron of ERBB2(+):119bp after exon 25	5-UTR of SHC1(-):11Kb before coding start	GRCh37	TRANSLOCATION	ERBB2 (NM_004448)  - SHC1 (NM_001130040 ) rearrangement: t(1;17)(q21.3;q12)(chr1:g.154946879::chr17:g.37883375)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {ERBB2:SHC1}	0	NA	0	148	10	147
P-0009791-T01-IM5	SOMATIC	INPP4B	INPP4B	4	4	133235766	143130135	IGR: 835Kb before PCDH10(+)	Exon 14 of INPP4B(-)	GRCh37	INVERSION	INPP4B (NM_001101669)  Rearrangement: chr4:g.133235766_ c.881:INPP4Binv	PRECISE		MANUAL_OK	5to5	-	9894369	NA	0	18	59	19
P-0009791-T01-IM5	SOMATIC	PPP6C	PPP6C	9	9	127916047	133439773	Intron of PPP6C(-): 26bp before exon 6	IGR: 13Kb before LOC100272217(-)	GRCh37	INVERSION	PPP6C (NM_002721) Rearrangement :  c.460-26:PPP6C_chr9:g.133439773inv	PRECISE		MANUAL_OK	5to5	-	5523726	NA	0	7	6	7
P-0011025-T01-IM5	SOMATIC	CD74	ROS1	6	5	117645889	149783755	Intron of ROS1(-): 311bp before exon 34	Intron of CD74(-): 488bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 34-43) : t(5;6)(q32;q22.1)(chr5:g.149783755::chr6:g.117645889)	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	67	36	65
P-0011025-T02-IM6	SOMATIC	CD74	ROS1	6	5	117645889	149783756	Intron of ROS1(-):311bp before exon 34	Intron of CD74(-):486bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783756::chr6:g.117645889)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	111	10	112
P-0012114-T03-IM6	SOMATIC	DOT1L	DOT1L	19	19	2210154	2222594	Intron of DOT1L(+):244bp before exon 13	Intron of DOT1L(+):36bp after exon 24	GRCh37	DUPLICATION	DOT1L (NM_032482) Rearrangement: c.1006-245_c.3390+36dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : in frame	12440	NA	0	32	10	33
P-0012114-T03-IM6	SOMATIC	MET	MYH15	7	3	116412012	108193597	Exon 14 of MET(+)	Intron of MYH15(-):2Kb after exon 13	GRCh37	TRANSLOCATION	MET (NM_000245) - MYH15 (NM_014981) rearrangement: t(3;7)(q13.3;q31.2)(chr3:g.108193597::chr7:g.116412012)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MET:MYH15}	0	NA	0	35	10	35
P-0012114-T03-IM6	SOMATIC	CD47	MET	7	3	116412066	107772171	Intron of MET(+):23bp after exon 14	Intron of CD47(-):1Kb before exon 8	GRCh37	TRANSLOCATION	CD47 (NM_001777) - MET (NM_000245) rearrangement: t(3;7)(q13.12;q31.2)(chr3:g.107772171::chr7:g.116412066)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD47:MET}	0	NA	0	28	10	30
P-0013118-T02-IM6	SOMATIC	TVP23C	NCOR1	17	17	15422920	15971529	Intron of TVP23C(-):16Kb before exon 6	Intron of NCOR1(-):94bp before exon 32	GRCh37	DUPLICATION	TVP23C (NM_145301) - NCOR1 (NM_006311) rearrangement: c.463-16374:TVP23C_c.4514-94:NCOR1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TVP23C:NCOR1}	548609	NA	0	6	0	8
P-0013377-T01-IM5	SOMATIC	DNAJB1	PRKACA	19	19	14218681	14628020	Intron of PRKACA(-): 460bp before exon 2	Intron of DNAJB1(-): 162bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-162:DNAJB1_c.47-460:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (DNAJB1-PRKACA)	409339	NA	0	12	32	12
P-0013377-T01-IM5	SOMATIC	TERT	TERT	5	5	1295120	17316240	5-UTR of TERT(-): 16bp before coding start	IGR: 39Kb after BASP1(+)	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-16_chr5:g.17316240inv	PRECISE		MANUAL_OK	3to3	-	16021120	NA	0	9	19	7
P-0015437-T01-IM6	SOMATIC	FGFR2	HSPA12A	10	10	118448516	123242591	Intron of HSPA12A(-): 3Kb after exon 6	Intron of FGFR2(-): 621bp after exon 16	GRCh37	DELETION	FGFR2 (NM_000141) - HSPA12A (NM_025015) rearrangement: c.2301+621:FGFR2_c.663+3346:HSPA12Adel	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (FGFR2-HSPA12A)	4794075	NA	0	18	17	18
P-0019995-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52643374	52698913	Exon 17 of PBRM1(-)	Intron of PBRM1(-):3Kb before exon 5	GRCh37	DELETION	PBRM1 (NM_018313) Rearrangement :  c.385-2621_c.2522del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	55539	NA	0	5	10	5
P-0020088-T02-IM6	SOMATIC	CIC	CIC	19	19	42796797	48885780	Exon 14 of CIC(+)	Promoter of KDELR1(-):46bp from tx start	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.3255:CIC_chr19:g.48885780inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:KDELR1}	6088983	NA	0	96	10	95
P-0020088-T02-IM6	SOMATIC	RAD50	RAD50	5	5	131976605	132041768	Intron of RAD50(+):108bp after exon 24	Intron of KIF3A(-):374bp after exon 10	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.3752+108:RAD50_chr5:g.132041768del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	65163	NA	0	2	5	2
P-0020088-T02-IM6	SOMATIC	KMT2C	KMT2C	7	7	151864343	152093857	Exon 42 of KMT2C(-)	Intron of KMT2C(-):38Kb before exon 2	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.162-38097_c.9638del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	229514	NA	0	8	10	8
P-0020970-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	176104194	176132920	Exon 8 of RFWD2(-)	Intron of RFWD2(-):30bp after exon 4	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.920_c.642+31del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	28726	NA	0	45	10	45
P-0021147-T01-IM6	SOMATIC	GOPC	ROS1	6	6	117641701	117895530	Intron of ROS1(-):508bp before exon 36	Intron of GOPC(-):735bp before exon 5	GRCh37	DELETION	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-4 fused with ROS1 exons 36-43) :c.651-735:GOPC_c.5778-508:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {GOPC:ROS1}	253829	NA	0	53	10	62
P-0021782-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39917211	42872868	Intron of ERG(-):30Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449) Fusion (TMPRSS2 exon 1 with ERG exon4) : c.56-2752:TMPRSS2_c.39+30375:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2955657	NA	0	125	10	138
P-0023364-T03-IM6	SOMATIC	FGFR2	TACC2	10	10	123241587	123804484	Intron of FGFR2(-):2Kb after exon 17	Intron of TACC2(+):5Kb before exon 3	GRCh37	DUPLICATION	FGFR2 (NM_000141) - TACC2 (NM_206862) rearrangement: c.2301+1625:FGFR2_c.34-5469:TACC2dup	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	562897	NA	0	35	0	35
P-0024223-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36211645	36248854	Exon 3 of KMT2B(+)	Promoter of HSPB6(-):3Kb from tx start	GRCh37	DUPLICATION	KMT2B (NM_014727) rearrangement: c.1396_chr19:g.36248854dup	PRECISE		MANUAL_OK	5to3	-	37209	NA	0	27	10	27
P-0026275-T01-IM6	SOMATIC	FGFR2	ADAM12	10	10	123246899	127748115	Exon 15 of FGFR2(-)	Intron of ADAM12(-):5Kb after exon 14	GRCh37	DUPLICATION	FGFR2 (NM_000141) - ADAM12 (NM_003474) rearrangement: c.2026:FGFR2_c.1618+5260:ADAM12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR2:ADAM12}	4501216	NA	0	92	10	111
P-0027049-T04-IM6	SOMATIC	FOXA1	FOXA1	14	14	38060841	38067028	Exon 2 of FOXA1(-)	Promoter of FOXA1(-):8Kb from tx start	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.1148_c.-2851del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6187	NA	0	54	10	58
P-0027662-T01-IM6	SOMATIC	NOTCH2	NOTCH2	6	1	109700010	120462040	Intron of CD164(-):771bp after exon 2	Exon 31 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;6)(p12;q21)(chr1:g.120462040::chr6:g.109700010)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	21	10	21
P-0027826-T01-IM6	SOMATIC	PTEN	PTEN	10	7	89692753	65698751	Intron of PTEN(+):16bp before exon 5	5-UTR of TPST1(+):7Kb before coding start	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(7;10)(q11.21;q23.31)(chr7:g.65698751::chr10:g.89692753)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TPST1:PTEN}	0	NA	0	46	10	58
P-0028283-T03-IM6	SOMATIC	MET	MET	7	7	116381736	116411952	Intron of MET(+):657bp after exon 5	Exon 14 of MET(+)	GRCh37	DELETION	MET (NM_000245) rearrangement: c.1701+657_c.2937del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	30216	NA	0	162	10	165
P-0028570-T02-IM6	SOMATIC	RBMS2	POLE	12	12	56932702	133201418	Intron of RBMS2(+):17Kb after exon 1	Intron of POLE(-):22bp before exon 49	GRCh37	INVERSION	RBMS2 (NM_002898) - POLE (NM_006231) rearrangement: c.66+16829:RBMS2_c.6748-22i:POLEinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBMS2:POLE}	76268716	NA	0	119	10	118
P-0029293-T02-IM6	SOMATIC	TP63	TP63	3	3	189586634	189589222	Intron of TP63(+):129bp after exon 8	Intron of TP63(+):1Kb before exon 10	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.1129+129_c.1213-1426del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2588	NA	0	3	7	3
P-0030800-T01-IM6	SOMATIC	TP53	DNAH2	17	17	7576827	7710160	Intron of TP53(-):25bp after exon 9	Intron of DNAH2(+):307bp before exon 61	GRCh37	INVERSION	TP53 (NM_000546) - DNAH2 (NM_020877) Rearrangement : c.993+26:TP53_c.9443-308:DNAH2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TP53:DNAH2}	133333	NA	0	42	10	56
P-0031772-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	2350666	27100091	IGR: 14Kb before PEX10(-)	Exon 16 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.3887:ARID1A_chr1:g.2350666inv	PRECISE		MANUAL_OK	5to5	-	24749425	NA	0	12	10	14
P-0032093-T01-IM6	SOMATIC	MPL	MPL	1	1	43803731	44094042	Intron of MPL(+):38bp before exon 2	IGR: 22Kb before KDM4A(+)	GRCh37	INVERSION	MPL (NM_005373) rearrangement: c.80-39:MPL_chr1:g.44094042inv	PRECISE		MANUAL_OK	5to5	-	290311	NA	0	59	10	73
P-0032093-T01-IM6	SOMATIC	AXIN1	CREBBP	16	16	369545	3824692	Intron of AXIN1(-):5Kb before exon 3	Exon 12 of CREBBP(-)	GRCh37	DUPLICATION	AXIN1 (NM_003502) - CREBBP (NM_004380) rearrangement: c.879-4862:AXIN1_c.2161:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AXIN1:CREBBP}	3455147	NA	0	103	10	105
P-0032119-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683196	128647716	Intron of EWSR1(+):73bp after exon 8	Intron of FLI1(+):4Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-8 with FLI1 exons 5-9) : t(11;22)(q24.3;q12.2)(chr11:g.128647716::chr22:g.29683196)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	70	10	71
P-0032148-T04-IM6	SOMATIC	ETV6	NTRK3	15	12	88522437	12037217	Intron of NTRK3(-):38Kb before exon 15	Intron of ETV6(+):161bp before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12037217::chr15:g.88522437)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	26	10	26
P-0032266-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737293	1808745	Intron of TACC3(+):164bp before exon 8	Intron of FGFR3(+):84bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+84:FGFR3_c.1645-165:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71452	NA	0	295	10	428
P-0032956-T01-IM6	SOMATIC	SF3B1	SF3B1	2	2	42597820	198283224	IGR: 20Kb before COX7A2L(-)	Intron of SF3B1(-):8bp after exon 5	GRCh37	INVERSION	SF3B1 (NM_012433) Rearrangement: c.495+9:SF3B1_chr2:g.42597820inv	PRECISE		MANUAL_OK	5to5	-	155685404	NA	0	5	10	6
P-0033104-T01-IM6	SOMATIC	CRLF2	CRLF2	X	1	1325592	4837783	Intron of CRLF2(-):100bp before exon 3	3-UTR of AJAP1(+):122Kb after coding stop	GRCh37	TRANSLOCATION	CRLF2 (NM_022148) Rearrangement : t(X,1)(p22.32; p16.31)(chrX:g.1325592::chr1:g.4837783)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	33	10	32
P-0033104-T01-IM6	SOMATIC	PPP2R3B	PLK2	X	5	309911	57755878	Intron of PPP2R3B(-):1Kb before exon 3	5-UTR of PLK2(-):5Kb before coding start	GRCh37	TRANSLOCATION	PPP2R3B (NM_013239) - PLK2 (NM_006622) Rearrangement : t(X,5)(p22.32; q11.2)(chrX:g.309911::chr5:g.57755878)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {PPP2R3B:PLK2}	0	NA	0	46	10	45
P-0033510-T01-IM6	SOMATIC	EWSR1	CREB1	22	2	29684498	208435033	Intron of EWSR1(+):96bp before exon 9	Exon 6 of CREB1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB1 (NM_134442) fusion (EWSR1 exons 1-8 fused to CREB1 exons 6-9): t(2;22)(q33.3;q12.2)(chr2:g.208435033::chr22:g.29684498)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB1}	0	NA	0	129	10	138
P-0034603-T01-IM6	SOMATIC	SPEN	SPEN	1	1	15589791	16260698	Intron of FHAD1(+):9Kb before exon 3	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.7963:SPEN_chr1:g.15589791inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	670907	NA	0	5	6	4
P-0035891-T01-IM6	SOMATIC	B2M	B2M	15	5	45007799	61772023	Exon 2 of B2M(+)	Intron of IPO11(+):486bp before exon 9	GRCh37	TRANSLOCATION	B2M (NM_004048) rearrangement: t(5;15)(q12.1;q21.1)(chr5:g.61772023::chr15:g.45007799)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	7	6
P-0035891-T01-IM6	SOMATIC	MST1	MST1	3	3	49629637	49723307	Intron of BSN(+):33Kb before exon 2	Exon 10 of MST1(-)	GRCh37	DUPLICATION	MST1 (NM_020998) rearrangement: c.1236:MST1_chr3:g.49629637dup	PRECISE		MANUAL_OK	5to3	-	93670	NA	0	2	10	5
P-0035891-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	5	56129857	56174763	Intron of MAP3K1(+):18Kb after exon 1	Intron of MAP3K1(+):43bp before exon 11	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.482+17975_c.1966-44del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : out of frame	44906	NA	0	2	7	3
P-0036235-T01-IM6	SOMATIC	FOXA1	FOXA1	14	14	37143996	38064211	Intron of PAX9(+):1Kb before exon 5	5-UTR of FOXA1(-):4Kb before coding start	GRCh37	INVERSION	FOXA1 (NM_004496) rearrangement: c.-34:FOXA1_chr14:g.37143996inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PAX9:FOXA1}	920215	NA	0	149	10	148
P-0036235-T01-IM6	SOMATIC	KLK2	ETV1	19	7	51377605	13975427	Intron of KLK2(+):371bp before exon 2	Exon 7 of ETV1(-)	GRCh37	TRANSLOCATION	KLK2 (NM_005551) - ETV1(NM_001163147) rearrangement: t(7;19)(p21.2;q13.33)(chr7:g.13975427::chr19:g.51377605)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KLK2:ETV1}	0	NA	0	95	10	94
P-0037029-T01-IM6	SOMATIC	SYT16	AKT1	14	14	62562584	105246431	Intron of SYT16(+):5Kb before exon 6	Exon 3 of AKT1(-)	GRCh37	INVERSION	SYT16 (NM_031914) - AKT1 (NM_001014431) rearrangement: c.1625-4528:SYT16_c.169:AKT1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SYT16:AKT1}	42683847	NA	0	34	10	34
P-0037029-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39829127	42868331	Intron of ERG(-):12Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1715:TMPRSS2_c.19-11583:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3039204	NA	0	101	10	115
P-0037098-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30671008	54282565	Exon 12 of MDC1(-)	IGR: 109Kb before TINAG(+)	GRCh37	DUPLICATION	MDC1 (NM_014641) rearrangement: c.5738:MDC1_chr6:g.54282565dup	PRECISE		MANUAL_OK	5to3	-	23611557	NA	0	18	10	18
P-0037132-T01-IM6	SOMATIC	IDH1	IDH1	2	2	209106800	209112356	Exon 7 of IDH1(-)	Intron of IDH1(-):736bp after exon 4	GRCh37	DELETION	IDH1 (NM_005896) rearrangement: c.414+737_c.768del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5556	NA	0	4	10	5
P-0037132-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	42868242	42872257	Intron of TMPRSS2(-):2Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-2141_c.127-1737inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4015	NA	0	4	10	4
P-0037262-T01-IM6	SOMATIC	RARA	KCNH4	17	17	38508794	40321118	Intron of RARA(+):35bp after exon 6	Intron of KCNH4(-):376bp after exon 9	GRCh37	INVERSION	RARA (NM_000964) - KCNH4 (NM_012285) rearrangement: c.807+35:RARA_c.1590+377:KCNH4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RARA:KCNH4}	1812324	NA	0	134	10	161
P-0037286-T01-IM6	SOMATIC	NCOR1	ZNF559	19	17	9438166	15989661	Intron of ZNF559(+):3Kb after exon 2	Exon 23 of NCOR1(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) - ZNF559 (NM_001202406) rearrangement: t(17;19)(p12;p13.2)(chr17:g.15989661::chr19:g.9438166)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	31	10	32
P-0037383-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36211498	36213862	Exon 3 of KMT2B(+)	Intron of KMT2B(+):34bp before exon 6	GRCh37	DUPLICATION	KMT2B (NM_014727) rearrangement: c.1249_c.2723-35dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2364	NA	0	68	10	70
P-0037423-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39805396	42873112	Intron of ERG(-):10Kb before exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2996:TMPRSS2_c.237-9913:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3067716	NA	0	16	10	16
P-0037450-T01-IM6	SOMATIC	CSDE1	CSDE1	1	1	37745433	115260807	IGR: 118Kb before MIR4255(+)	Exon 21 of CSDE1(-)	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.2518:CSDE1_chr1:g.37745433inv	PRECISE		MANUAL_OK	5to5	-	77515374	NA	0	3	10	3
P-0037450-T01-IM6	SOMATIC	EED	FTO	16	11	53843744	85967478	Intron of FTO(+):307bp before exon 2	Exon 5 of EED(+)	GRCh37	TRANSLOCATION	EED (NM_003797) - FTO (NM_001080432) rearrangement: t(11,16)(q14.2;q12.2)(chr11:g.85967478::chr16:g.53843744)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {EED:FTO}	0	NA	0	5	0	5
P-0037511-T01-IM6	SOMATIC	XPO1	XPO1	2	2	61705818	61713538	3-UTR of XPO1(-):136bp after coding stop	Intron of XPO1(-):441bp before exon 20	GRCh37	DUPLICATION	XPO1 (NM_003400) Rearrangement : c.2314-441_c.*137dup	PRECISE		MANUAL_OK	5to3	-	7720	NA	0	14	10	16
P-0037581-T01-IM6	SOMATIC	NOTCH3	PSMC5	19	17	15272285	61904863	Exon 33 of NOTCH3(-)	Exon 1 of PSMC5(+)	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) - PSMC5 (NM_002805) rearrangement: t(17,19)(q23.3;p13.12)(chr17:g.61904863::chr19:g.15272285)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH3:PSMC5}	0	NA	0	45	10	51
P-0037617-T01-IM6	SOMATIC	BICC1	FGFR2	10	10	60427774	123241302	Intron of BICC1(+):34Kb before exon 3	Intron of FGFR2(-):2Kb before exon 18	GRCh37	INVERSION	BICC1 (NM_001080512) - FGFR2 (NM_000141) rearrangement: c.238-34060:BICC1_c.2302-1767:FGFR2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {BICC1:FGFR2}	62813528	NA	0	104	10	104
P-0037666-T01-IM6	SOMATIC	SOX2	PIK3C2G	12	3	18665844	181430991	Intron of PIK3C2G(+):7Kb after exon 23	Exon 1 of SOX2(+)	GRCh37	TRANSLOCATION	SOX2 (NM_003106) -PIK3C2G (NM_004570) rearrangement: t(3;12)(q26.33;p12.3)(chr3:g.181430991::chr12:g.18665844)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SOX2:PIK3C2G}	0	NA	0	36	10	37
P-0037668-T01-IM6	SOMATIC	EML4	ALK	2	2	29447631	42525639	Intron of ALK(-):695bp after exon 19	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2742:EML4_c.3172+696:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078008	NA	0	39	10	39
P-0037668-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55249238	84278082	Intron of EGFR(+):67bp after exon 20	IGR: 116Kb before LOC101927378(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2469+67:EGFR_chr7:g.84278082del	PRECISE		MANUAL_OK	3to5	-	29028844	NA	0	15	10	15
P-0037682-T01-IM6	SOMATIC	FAT1	PCGF3	4	4	756508	187518253	Intron of PCGF3(+):1Kb after exon 9	Exon 25 of FAT1(-)	GRCh37	INVERSION	FAT1 (NM_005245) - PCGF3 (NM_006315) Rearrangement : c.12441:FAT1_c.600+1304:PCGF3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FAT1:PCGF3}	186761745	NA	0	4	9	4
P-0037698-T01-IM6	SOMATIC	IDH2	IDH2	15	15	90523585	90628575	IGR: 21Kb before ZNF710(+)	Exon 8 of IDH2(-)	GRCh37	DELETION	IDH2 (NM_002168) rearrangement: c.1012:IDH2_chr15:g.90523585del	PRECISE		MANUAL_OK	3to5	-	104990	NA	0	4	10	4
P-0037701-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39798230	42869522	Intron of ERG(-):3Kb before exon 3	Intron of TMPRSS2(-):523bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+524:TMPRSS2_c.237-2747:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3071292	NA	0	62	0	65
P-0037768-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2134097	2139229	Intron of TSC2(+):131bp before exon 34	Promoter of TSC2(+):41Kb from tx start	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.4006-132:TSC2_chr16:g.2139229del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	5132	NA	0	6	6	8
P-0037945-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12006418	12150359	Exon 4 of ETV6(+)	IGR: 74Kb before BCL2L14(+)	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.386_chr12:g.12150359dup	PRECISE		MANUAL_OK	5to3	-	143941	NA	0	44	10	45
P-0038256-T01-IM6	SOMATIC	ERC1	RET	12	10	1264106	43609964	Intron of ERC1(+):13Kb after exon 7	Exon 11 of RET(+)	GRCh37	TRANSLOCATION	ERC1 (NM_178040) - RET (NM_020975) Rearrangement : t(10;12)(q11.1; p13.32)(chr10:g.43609964::chr12:g.1264106)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ERC1:RET}	0	NA	0	99	10	99
P-0038720-T01-IM6	SOMATIC	SPRED1	SPRED1	15	15	38643858	38644670	Exon 7 of SPRED1(+)	3-UTR of SPRED1(+):99Kb after coding stop	GRCh37	DELETION	SPRED1 (NM_152594) rearrangement: c.1328_c.*805	PRECISE		MANUAL_OK	3to5	-	812	NA	0	12	10	12
P-0038720-T01-IM6	SOMATIC	BAP1	BAP1	3	3	52436280	52439646	3-UTR of BAP1(-):23bp after coding stop	Intron of BAP1(-):134bp after exon 10	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.931+135_c.*24del	IMPPRECISE		MANUAL_OK	3to5	-	3366	NA	0	14	0	17
P-0038793-T01-IM6	SOMATIC	BAP1	PHF7	3	3	52443916	52450490	5-UTR of BAP1(-):8Kb before coding start	Intron of PHF7(+):2Kb after exon 4	GRCh37	DELETION	BAP1 (NM_004656) -  PHF7 (NM_016483) rearrangement: c.-22:BAP1_c.186+1887:PHF7del	PRECISE		MANUAL_OK	3to5	-	6574	NA	0	42	10	45
P-0038803-T01-IM6	SOMATIC	BCOR	BCOR	X	X	14000773	39923607	IGR: 24Kb before GEMIN8(-)	Exon 7 of BCOR(-)	GRCh37	DUPLICATION	BCOR (NM_001123385) rearrangement: chrX:g.14000773_c.3484dup	PRECISE		MANUAL_OK	5to3	-	25922834	NA	0	9	10	11
P-0039448-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32184781	32202804	Exon 11 of NOTCH4(-)	IGR: 40Kb before NOTCH4(-)	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.1802:NOTCH4_chr6:g.32202804inv	PRECISE		MANUAL_OK	5to5	-	18023	NA	0	12	10	12
P-0039596-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21787644	22008592	IGR: 15Kb before MTAP(+)	Intron of CDKN2B(-):204bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+205:CDKN2B_chr9:g.21787644del	PRECISE		MANUAL_OK	3to5	-	220948	NA	0	30	10	30
P-0039600-T01-IM6	SOMATIC	ARID1B	ARID1B	6	3	157521882	83610636	Exon 18 of ARID1B(+)	IGR: 1Mb before LINC00971(-)	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(3;6)(p12.1;q25.3)(chr3:g.83610636::chr6:g.157521882)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	43	10	44
P-0039600-T01-IM6	SOMATIC	WHSC1L1	ADAM18	8	8	38133844	39489803	Exon 23 of WHSC1L1(-)	Intron of ADAM18(+):3Kb after exon 7	GRCh37	INVERSION	WHSC1L1 (NM_023034) - ADAM18 (NM_014237) rearrangement: c.4042:WHSC1L1_c.588+2845:ADAM18inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {WHSC1L1:ADAM18}	1355959	NA	0	116	10	139
P-0039751-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	29679276	32188064	IGR: 12Kb before HLA-F(+)	Intron of NOTCH4(-):3bp before exon 7	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.1160-3:NOTCH4_chr6:g.29679276del	PRECISE		MANUAL_OK	3to5	-	2508788	NA	0	35	10	37
P-0039829-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201981623	201984748	Intron of ELF3(+):59bp after exon 4	3-UTR of ELF3(+):4Kb after coding stop	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.478+59:ELF3_chr1:g.201984748del	PRECISE		MANUAL_OK	3to5	-	3125	NA	0	26	10	26
P-0039901-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201982157	201990452	Exon 6 of ELF3(+)	IGR: 11Kb before ELF3(+)	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.681:ELF3_chr1:g.201990452del	PRECISE		MANUAL_OK	3to5	-	8295	NA	0	5	10	5
P-0039982-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	26831005	27106439	IGR: 25Kb before RPS6KA1(+)	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.6050:ARID1A_chr1:g.26831005del	PRECISE		MANUAL_OK	3to5	-	275434	NA	0	22	10	24
P-0040007-T01-IM6	SOMATIC	GATA3	GATA3	10	6	8106070	121274074	Exon 4 of GATA3(+)	IGR: 127Kb before TBC1D32(-)	GRCh37	TRANSLOCATION	GATA3 (NM_002051) rearrangement: t(6;10)(q22.31;p14)(chr6:g.121274074::chr10:g.8106070)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	18	10	19
P-0040032-T01-IM6	SOMATIC	ALK	ALK	2	2	29446693	29449151	Intron of ALK(-):299bp before exon 20	Intron of ALK(-):636bp after exon 18	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3067+637_c.3173-299del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2458	NA	0	41	10	43
P-0040032-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970970	21981057	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.388:CDKN2A_chr9:g.21981057	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10087	NA	0	4	10	5
P-0040094-T01-IM6	SOMATIC	CALR	CALR	19	1	13050882	36624367	Exon 4 of CALR(+)	Intron of MAP7D1(+):2Kb after exon 1	GRCh37	TRANSLOCATION	CALR (NM_004343) rearrangement: t(1;19)(p34.3;p13.2)(chr1:g.36624367::chr19:g.13050882)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	31	10	56
P-0040121-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141564871	141572569	Intron of AGO2(-):1Kb after exon 10	Exon 4 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) rearrangement: c.501_c.1269+1124del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7698	NA	0	11	10	12
P-0040126-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115118868	115140428	Exon 2 of TBX3(-)	IGR: 32Kb before TBX3(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.473:TBX3_chr12:g.115140428del	PRECISE		MANUAL_OK	3to5	-	21560	NA	0	48	10	48
P-0040248-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55233129	55238867	Exon 15 of EGFR(+)	Exon 16 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1879_c.1881-1del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	5738	NA	0	2	10	2
P-0040444-T01-IM6	SOMATIC	PMAIP1	PMAIP1	18	18	57567464	57569876	Exon 1 of PMAIP1(+)	Intron of PMAIP1(+):2bp before exon 2	GRCh37	DELETION	PMAIP1 (NM_021127) rearrangement: c.55_c.59-3del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2412	NA	0	5	9	5
P-0040509-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39941156	42874439	Intron of ERG(-):6Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4323:TMPRSS2_c.39+6430:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2933283	NA	0	48	10	54
P-0040518-T01-IM6	SOMATIC	PTPRS	PTPRS	19	12	5222209	114898875	Exon 19 of PTPRS(-)	IGR: 53Kb before TBX5-AS1(+)	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(12;19)(q24.21;p13.3)(chr12:g.114898875::chr19:g.5222209)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0040545-T01-IM6	SOMATIC	FLT3	PDX1	13	13	28496632	28597316	Intron of PDX1(+):2Kb before exon 2	Intron of FLT3(-):170bp after exon 19	GRCh37	INVERSION	FLT3 (NM_004119) - PDX1 (NM_000209) rearrangement: c.2418+171:FLT3_c.407-1761:PDX1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FLT3:PDX1}	100684	NA	0	7	7	7
P-0040587-T01-IM6	SOMATIC	ERCC5	ERCC5	13	13	103514733	103600469	Exon 8 of ERCC5(+)	IGR: 68Kb before METTL21EP(+)	GRCh37	INVERSION	ERCC5 (NM_000123) rearrangement: c.1234:ERCC5_chr13:g.103600469inv	PRECISE		MANUAL_OK	5to5	-	85736	NA	0	25	10	26
P-0040587-T01-IM6	SOMATIC	E4F1	TRAF7	16	16	2224280	2279467	Exon 14 of TRAF7(+)	Intron of E4F1(+):103bp before exon 3	GRCh37	DUPLICATION	E4F1 (NM_004424) - TRAF7 (NM_032271) rearrangement: c.310-104:E4F1_c.1292:TRAF7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {E4F1:TRAF7}	55187	NA	0	21	10	22
P-0040614-T01-IM6	SOMATIC	PIAS4	MAP2K2	19	19	4022240	4102646	Intron of PIAS4(+):2Kb before exon 3	Intron of MAP2K2(-):195bp before exon 4	GRCh37	INVERSION	PIAS4 (NM_015897) - MAP2K2 (NM_030662) rearrangement: c.455-1794:PIAS4_c.451-195:MAP2K2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PIAS4:MAP2K2}	80406	NA	0	3	3	3
P-0040669-T01-IM6	SOMATIC	TP53BP1	TP53BP1	15	15	43713244	43716291	Exon 20 of TP53BP1(-)	Intron of TP53BP1(-):2Kb before exon 19	GRCh37	INVERSION	TP53BP1 (NM_001141980) rearrangement: c.3829-1967_c.4229inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3047	NA	0	27	10	29
P-0040672-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157495994	158764567	Intron of ARID1B(+):743bp after exon 11	Intron of TULP4(+):29Kb after exon 1	GRCh37	INVERSION	ARID1B (NM_020732) rearrangement: c.3135+743:ARID1B_chr6:g.158764567inv	PRECISE		MANUAL_OK	5to5	-	1268573	NA	0	62	10	71
P-0040749-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39884198	42867570	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1065:TMPRSS2_c.39+63388:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2983372	NA	0	10	10	10
P-0040752-T01-IM6	SOMATIC	CDK12	C6orf203	17	6	37687160	107368450	Exon 14 of CDK12(+)	Intron of C6orf203(+):3Kb after exon 3	GRCh37	TRANSLOCATION	CDK12 (NM_016507) - C6orf203 (NM_016487) rearrangement: t(6;17)(q21;q12)(chr6:g.107368450::chr17:g.37687160)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDK12:C6orf203}	0	NA	0	18	10	18
P-0040752-T01-IM6	SOMATIC	PIK3R3	PIK3R3	2	1	218631120	46532639	IGR: 33Kb before TNS1(-)	Exon 4 of PIK3R3(-)	GRCh37	TRANSLOCATION	PIK3R3 (NM_003629) rearrangement: t(1;2)(p34.1;q35)(chr1:g.46532639::chr2:g.218631120)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	18	10	18
P-0040781-T01-IM6	SOMATIC	CLEC3B	CTNNB1	3	3	41274835	45074212	Exon 8 of CTNNB1(+)	Intron of CLEC3B(+):2Kb after exon 2	GRCh37	DUPLICATION	CLEC3B (NM_003278) - CTNNB1 (NM_001904) rearrangement: c.208+1795:CLEC3B_c.1085:CTNNB1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CLEC3B:CTNNB1}	3799377	NA	0	53	10	52
P-0040956-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49424848	49429597	Intron of KMT2D(-):32bp before exon 40	Intron of KMT2D(-):879bp before exon 35	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.10232-879_c.13531-32del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	4749	NA	0	31	10	31
P-0040956-T01-IM6	SOMATIC	NOTCH1	FH	9	1	139417940	241672198	Intron of NOTCH1(-):228bp after exon 3	Intron of FH(-):113bp before exon 5	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - FH (NM_000143) rearrangement: t(1;9)(q43;q34.3)(chr1:g.241672198::chr9:g.139417940)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH1:FH}	0	NA	0	10	10	8
P-0040972-T01-IM6	SOMATIC	NF1	NF1	17	17	29559116	65973172	Exon 25 of NF1(+)	Intron of BPTF(+):1Kb after exon 29	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.3223:NF1_chr17:g.65973172inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	36414056	NA	0	7	10	8
P-0040972-T01-IM6	SOMATIC	CRLF2	REPS2	X	X	1325340	17051353	Exon 3 of CRLF2(-)	Intron of REPS2(+):4Kb after exon 5	GRCh37	INVERSION	CRLF2 (NM_022148) - REPS2 (NM_004726) rearrangement: c.335:CRLF2_c.771+3607:REPS2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CRLF2:REPS2}	15726013	NA	0	53	10	69
P-0040975-T01-IM6	SOMATIC	SYNRG	ERBB2	17	17	35911151	37875668	Intron of SYNRG(-):2Kb after exon 13	Intron of ERBB2(+):371bp before exon 16	GRCh37	INVERSION	SYNRG (NM_007247) - ERBB2 (NM_004448) fusion: c.2608+2066:SYNRG_c.1899-372:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SYNRG:ERBB2}	1964517	NA	0	47	10	47
P-0040993-T01-IM6	SOMATIC	RPS6KB2	RPS6KB2	11	7	67201562	100944179	Intron of RPS6KB2(+):34bp after exon 11	IGR: 7Kb before LOC101927746(+)	GRCh37	TRANSLOCATION	RPS6KB2 (NM_003952) rearrangement: t(7;11)(q22.1;q13.2)(chr7:g.100944179::chr11:g.67201562)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	7
P-0041034-T01-IM6	SOMATIC	TRAF7	TRAF7	16	16	145124	2218336	Intron of NPRL3(-):2Kb before exon 7	Intron of TRAF7(+):167bp after exon 4	GRCh37	DELETION	TRAF7 (NM_032271) rearrangement: c.231+167:TRAF7_chr16:g.145124del	PRECISE		MANUAL_OK	3to5	-	2073212	NA	0	2	4	2
P-0041034-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39866509	42871642	Intron of ERG(-):4Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1526:TMPRSS2_c.18+3778:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3005133	NA	0	138	10	146
P-0041122-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21971126	22045861	Exon 2 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):75Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.275:CDKN2A_chr9:g.22045861del	PRECISE		MANUAL_OK	3to5	-	74735	NA	0	10	10	11
P-0041144-T01-IM6	SOMATIC	KRAS	KRAS	12	10	25378602	36334124	Exon 4 of KRAS(-)	IGR: 267Kb before LINC01452(+)	GRCh37	TRANSLOCATION	KRAS (NM_033360) rearrangement: t(10;12)(p11.21;p12.1)(chr10:g.36334124::chr12:g.25378602)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	7	0	7
P-0041176-T01-IM6	SOMATIC	PDGFRA	ZNF536	19	4	30956498	55130148	Intron of ZNF536(+):20Kb after exon 2	Intron of PDGFRA(+):54bp after exon 4	GRCh37	TRANSLOCATION	PDGFRA (NM_006206) - ZNF536 (NM_014717) rearrangement: t(4;19)(q12;q12)(chr4:g.55130148::chr19:g.30956498)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {PDGFRA:ZNF536}	0	NA	0	8	10	7
P-0041193-T01-IM6	SOMATIC	PBRM1	PBRM1	4	3	17436245	52637879	IGR: 52Kb before QDPR(-)	Intron of PBRM1(-):131bp before exon 18	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(3;4)(p21.1;p15.32)(chr3:g.52637879::chr4:g.17436245)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	10	5
P-0041196-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39878073	42875776	Intron of ERG(-):61Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+4101:TMPRSS2_c.40-60529:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2997703	NA	0	6	10	7
P-0041196-T01-IM6	SOMATIC	GATA2	GATA2	3	3	128205869	177218975	Exon 2 of GATA2(-)	5-UTR of LINC00578(+):252Kb before coding start	GRCh37	DELETION	GATA2 (NM_032638) rearrangement: c.6:GATA2_chr3:g.177218975del	PRECISE		MANUAL_OK	3to5	-	49013106	NA	0	22	10	24
P-0041295-T01-IM6	SOMATIC	STK11	STK11	19	19	1111056	1218449	Exon 25 of SBNO2(-)	Exon 2 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.324:STK11_chr19:g.1111056del	PRECISE		MANUAL_OK	3to5	-	107393	NA	0	23	10	24
P-0041298-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11086045	11132550	5-UTR of SMARCA4(+):9Kb before coding start	Exon 19 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2766:SMARCA4_chr19:g.11086045del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	46505	NA	0	8	7	8
P-0041309-T01-IM6	SOMATIC	MAP2K4	MAP2K4	17	17	11978220	11984674	Intron of MAP2K4(+):6Kb before exon 3	Exon 3 of MAP2K4(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.219-6453_c.220del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6454	NA	0	7	10	16
P-0041327-T01-IM6	SOMATIC	TERT	TERT	5	1	1295277	99836853	Promoter of TERT(-):42Kb from tx start	IGR: 101Kb before LOC101928270(-)	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(1;5)(p21.2;p15.3)(chr1:g.99836853::chr5:g.1295277)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	66	10	102
P-0041343-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139239051	139396851	Intron of GPSM1(+):4Kb after exon 9	Exon 28 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.5257:NOTCH1_chr9:g.139239051del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	157800	NA	0	36	10	40
P-0041440-T02-IM6	SOMATIC	MSH2	MSH2	14	2	67729442	47637189	5-UTR of MPP5(+):16Kb before coding start	Intron of MSH2(+):43bp before exon 3	GRCh37	TRANSLOCATION	MSH2 (NM_000251) rearrangement: t(2;14)(p21;q23.3)(chr2:g.47637189::chr14:g.67729442)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	64	10	67
P-0041456-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	124678791	145740262	IGR: 14Kb before ANXA13(-)	Intron of RECQL4(-):57bp after exon 9	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.1620+58:RECQL4_chr8:g.124678791inv	PRECISE		MANUAL_OK	5to5	-	21061471	NA	0	5	8	5
P-0121435-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76909487	77030840	Intron of ATRX(-):100bp after exon 14	Intron of ATRX(-):11Kb after exon 1	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.20+10628_c.4317+101inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	121353	NA	0	15	10	15
P-0041632-T01-IM6	SOMATIC	MYL6B	ERBB3	12	12	56481371	56549607	Exon 5 of ERBB3(+)	Intron of MYL6B(+):231bp after exon 5	GRCh37	DUPLICATION	MYL6B (NM_002475) - ERBB3 (NM_001982) rearrangement: c.520+231:MYL6B_c.558:ERBB3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MYL6B:ERBB3}	68236	NA	0	69	10	74
P-0041632-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	338324	349871	Intron of AXIN1(-):76bp before exon 11	Intron of AXIN1(-):2Kb before exon 6	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.1255-1620_c.2463-76del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	11547	NA	0	7	0	8
P-0041646-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2131588	63844236	Intron of TSC2(+):7bp before exon 31	IGR: 1Mb before CDH11(-)	GRCh37	INVERSION	TSC2 (NM_000548) rearrangement: c.3611-8:TSC2_chr16:g.63844236inv	PRECISE		MANUAL_OK	5to5	-	61712648	NA	0	7	10	7
P-0041670-T01-IM6	SOMATIC	MET	MET	7	7	116414437	116418812	Intron of MET(+):497bp before exon 15	Intron of MET(+):17bp before exon 17	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.3029-498_c.3341-18dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	4375	NA	0	204	10	214
P-0041670-T01-IM6	SOMATIC	PREX2	PREX2	8	8	69031051	71451088	Intron of PREX2(+):172bp after exon 27	IGR: 34Kb before TRAM1(-)	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.3421+172:PREX2_chr8:g.71451088inv	PRECISE		MANUAL_OK	3to3	-	2420037	NA	0	14	10	14
P-0041837-T01-IM6	SOMATIC	TMEM117	RECQL	12	12	21628764	44514396	Intron of RECQL(-):6bp before exon 10	Intron of TMEM117(+):23Kb before exon 4	GRCh37	INVERSION	TMEM117 (NM_032256) - RECQL (NM_032941) rearrangement: c.411-22932:TMEM117_c.950-6:RECQLinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {TMEM117:RECQL}	22885632	NA	0	3	6	2
P-0041892-T02-IM6	SOMATIC	TP53	TP53	17	13	7577094	44935011	Exon 8 of TP53(-)	IGR: 13Kb before SERP2(+)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(13;17)(q14.11;p13.1)(chr13:g.44935011::chr17:g.7577094)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	102	10	107
P-0041892-T02-IM6	SOMATIC	KMT2B	KMT2B	19	2	36210677	154444366	Intron of KMT2B(+):8bp before exon 3	IGR: 111Kb before RPRM(-)	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(2;19)(q23.3;q13.12)(chr2:g.154444366::chr19:g.36210677)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	16
P-0042108-T01-IM6	SOMATIC	ANKRD11	ANKRD11	17	16	73285392	89350931	5-UTR of SLC25A19(-):16Kb before coding start	Exon 9 of ANKRD11(-)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(16;17)(q24.3;q25.1)(chr16:g.89350931::chr17:g.73285392)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ANKRD11:SLC25A19}	0	NA	0	11	10	11
P-0042108-T01-IM6	SOMATIC	DNMT1	DNMT1	19	19	10255270	10259707	Intron of DNMT1(-):607bp before exon 28	Intron of DNMT1(-):14bp before exon 26	GRCh37	DUPLICATION	DNMT1 (NM_001379) rearrangement: c.2539-14_c.2847-607dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	4437	NA	0	8	10	8
P-0042156-T01-IM6	SOMATIC	EP300	EP300	22	22	41567682	41569651	Intron of EP300(+):820bp before exon 28	Exon 29 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.4453-821_c.4642del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1969	NA	0	55	10	61
P-0042200-T01-IM6	SOMATIC	CARM1	CARM1	19	4	11018608	65841314	Intron of CARM1(+):106bp before exon 3	3-UTR of LOC401134(-):29Kb after coding stop	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(4;19)(q13.1;p13.2)(chr4:g.65841314::chr19:g.11018608)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	6	8	6
P-0042215-T01-IM6	SOMATIC	ACOXL	BCL2L11	2	2	111837930	111881555	Intron of ACOXL(+):13Kb before exon 17	Exon 2 of BCL2L11(+)	GRCh37	DELETION	ACOXL (NM_001142807) - BCL2L11 (NM_138621) rearrangement: c.1441-12512:ACOXL_c.233:BCL2L11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ACOXL:BCL2L11}	43625	NA	0	2	7	3
P-0042238-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32963587	32972494	Intron of BRCA2(+):5Kb before exon 25	Exon 27 of BRCA2(+)	GRCh37	DUPLICATION	BRCA2 (NM_000059) rearrangement: c.9257-5239_c.9844dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8907	NA	0	42	10	44
P-0042238-T01-IM6	SOMATIC	CBFB	CBFB	16	16	1667825	67100790	Intron of CRAMP1L(+):3Kb after exon 1	Intron of CBFB(+):89bp after exon 4	GRCh37	INVERSION	CBFB (NM_022845) rearrangement: c.399+89:CBFB_chr16:g.1667825inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	65432965	NA	0	16	10	15
P-0042276-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39855504	42873029	Intron of ERG(-):15Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-2913:TMPRSS2_c.18+14783:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3017525	NA	0	89	10	93
P-0042373-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	52672960	52685721	Intron of PBRM1(-):3Kb after exon 11	Intron of PBRM1(-):36bp after exon 7	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.714+37_c.1087+3010del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	12761	NA	0	9	10	9
P-0042476-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72733095	72830494	IGR: 84Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.6087:ZFHX3_chr16:g.72733095inv	PRECISE		MANUAL_OK	5to5	-	97399	NA	0	101	10	124
P-0042476-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72830483	72842602	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-):3Kb after exon 7	GRCh37	INVERSION	ZFHX3 (NM_006885) rearrangement: c.3864+2874_c.6098inv	PRECISE		MANUAL_OK	3to3	-	12119	NA	0	26	10	26
P-0042487-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151917636	152334919	Exon 23 of KMT2C(-)	IGR: 9Kb before XRCC2(-)	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.3684:KMT2C_chr7:g.152334919inv	PRECISE		MANUAL_OK	5to5	-	417283	NA	0	6	10	34
P-0042602-T01-IM6	SOMATIC	CSF1R	CSF1R	16	5	29441275	149460317	IGR: 19Kb before LOC606724(+)	Intron of CSF1R(-):12bp after exon 3	GRCh37	TRANSLOCATION	CSF1R (NM_005211) rearrangement: t(5;16)(q32;p11.2)(chr5:g.149460317::chr16:g.29441275)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	9
P-0042602-T01-IM6	SOMATIC	MTOR	MTOR	17	1	7363393	11307670	3-UTR of ZBTB4(-):2Kb after coding stop	Intron of MTOR(-):11bp after exon 8	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;17)(p36.22;p13.1)(chr1:g.11307670::chr17:g.7363393)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	20	10	19
P-0042661-T01-IM6	SOMATIC	ALK	ALK	2	2	29447819	30031379	Intron of ALK(-):507bp after exon 19	Intron of ALK(-):91Kb before exon 2	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.668-90816_c.3172+508del	PRECISE		MANUAL_OK	3to5	Deletion of 18 exons : in frame	583560	NA	0	16	10	19
P-0042661-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76944259	76954101	Intron of ATRX(-):51bp after exon 7	Exon 3 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.150_c.594+52inv	PRECISE		MANUAL_OK	3to3	-	9842	NA	0	22	10	22
P-0042663-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39849335	42873130	Intron of ERG(-):21Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3014:TMPRSS2_c.18+20952:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3023795	NA	0	73	10	77
P-0042711-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39876629	42870659	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):543bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-543:TMPRSS2_c.40-59085:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994030	NA	0	29	10	31
P-0042744-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89705244	89717813	Intron of PTEN(+):7Kb before exon 6	Intron of PTEN(+):37bp after exon 7	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.493-6631_c.801+37dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	12569	NA	0	35	10	42
P-0042744-T01-IM6	SOMATIC	ARID1B	ARID1B	6	6	157469910	157516680	Exon 9 of ARID1B(+)	Intron of ARID1B(+):618bp before exon 16	GRCh37	DUPLICATION	ARID1B (NM_020732) rearrangement: c.2704_c.3863-619dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	46770	NA	0	53	10	57
P-0042830-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39871188	42873124	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3008:TMPRSS2_c.40-53644:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3001936	NA	0	23	10	26
P-0042868-T01-IM6	SOMATIC	PTPRS	PTPRS	19	19	3619854	5231397	Intron of CACTIN(-):270bp after exon 4	Exon 14 of PTPRS(-)	GRCh37	INVERSION	PTPRS (NM_002850) rearrangement: c.2079:PTPRS_chr19:g.3619854inv	PRECISE		MANUAL_OK	3to3	-	1611543	NA	0	250	10	250
P-0042958-T01-IM6	SOMATIC	PSMA5	SMYD3	1	1	109951264	246021970	Intron of PSMA5(-):1Kb after exon 8	Exon 10 of SMYD3(-)	GRCh37	DUPLICATION	PSMA5 (NM_002790) - SMYD3 (NM_001167740) rearrangement: c.648+1286:PSMA5_c.904:SMYD3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PSMA5:SMYD3}	136070706	NA	0	2	5	2
P-0042958-T01-IM6	SOMATIC	TOP1	TOP1	20	13	39658076	28121662	Exon 2 of TOP1(+)	3-UTR of LNX2(-):809bp after coding stop	GRCh37	TRANSLOCATION	TOP1 (NM_003286) rearrangement: t(13;20)(q12.2;q12)(chr13:g.28121662::chr20:g.39658076)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	26	10	25
P-0043042-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	22006089	35911127	Exon 2 of CDKN2B(-)	5-UTR of LINC00961(+):490bp before coding start	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.314:CDKN2B_chr9:g.35911127inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CDKN2B:LINC00961}	13905038	NA	0	11	10	12
P-0043048-T01-IM6	SOMATIC	MALT1	TMEM241	18	18	20954638	56400862	Intron of TMEM241(-):911bp before exon 7	Intron of MALT1(+):56bp after exon 11	GRCh37	INVERSION	MALT1 (NM_006785) - TMEM241 (NM_032933) rearrangement: c.1400+56:MALT1_c.384-911:TMEM241inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MALT1:TMEM241}	35446224	NA	0	4	8	4
P-0043103-T01-IM6	SOMATIC	TBX3	TBX3	12	5	115110308	151917805	Intron of TBX3(-):201bp before exon 8	IGR: 81Kb before LINC01470(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(5;12)(q33.1;q24.21)(chr5:g.151917805::chr12:g.115110308)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	5	0	5
P-0043106-T01-IM6	SOMATIC	ATR	ATR	3	3	142279719	142281272	Intron of ATR(-):365bp after exon 5	Exon 4 of ATR(-)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.972_c.1349+366inv	IMPPRECISE		MANUAL_OK	3to3	-	1553	NA	0	9	0	9
P-0043108-T01-IM6	SOMATIC	AXIN1	AXIN1	16	16	348255	371001	Intron of AXIN1(-):4bp before exon 6	Intron of AXIN1(-):6Kb before exon 3	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.879-6318_c.1255-4del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	22746	NA	0	7	10	7
P-0043113-T01-IM6	SOMATIC	BRCA2	BRCA2	13	2	32914249	241343675	Exon 11 of BRCA2(+)	IGR: 31Kb before GPC1(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(2;13)(q37.3;q13.1)(chr2:g.241343675::chr13:g.32914249)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0043246-T01-IM6	SOMATIC	PAN3	FLT1	13	13	28764068	28896637	Intron of PAN3(+):7Kb before exon 5	Intron of FLT1(-):141bp before exon 22	GRCh37	INVERSION	PAN3 (NM_175854) - FLT1 (NM_002019) rearrangement: c.691-7254:PAN3_c.2954-141:FLT1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {PAN3:FLT1}	132569	NA	0	13	10	13
P-0043404-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	11836214	21971371	IGR: 857Kb before TYRP1(+)	Intron of CDKN2A(-):164bp before exon 2	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-164:CDKN2A_chr9:g.11836214inv	PRECISE		MANUAL_OK	3to3	-	10135157	NA	0	6	6	6
P-0043413-T01-IM6	SOMATIC	ERG	TMPRSS2	21	21	39821557	42866733	Intron of ERG(-):4Kb before exon 2	Intron of TMPRSS2(-):228bp before exon 3	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-4013:ERG_c.127-228:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3045176	NA	0	29	10	29
P-0043472-T01-IM6	SOMATIC	RBM10	PLXNA3	X	X	47044799	153699003	Intron of RBM10(+):33bp after exon 19	Intron of PLXNA3(+):49bp after exon 30	GRCh37	DELETION	RBM10 (NM_001204468) - PLXNA3 (NM_017514) rearrangement: c.2361+33:RBM10_c.5156+49:PLXNA3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {RBM10:PLXNA3}	106654204	NA	0	31	10	32
P-0043583-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41246912	42410005	Intron of BRCA1(-):35bp before exon 10	IGR: 12Kb before GRN(+)	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.671-35:BRCA1_chr17:g.42410005del	PRECISE		MANUAL_OK	3to5	-	1163093	NA	0	63	10	67
P-0043583-T01-IM6	SOMATIC	ADHFE1	TMPRSS2	21	8	42875000	67354656	Intron of TMPRSS2(-):5Kb after exon 1	Intron of ADHFE1(+):376bp before exon 3	GRCh37	TRANSLOCATION	ADHFE1 (NM_144650) - TMPRSS2 (NM_001135099) rearrangement: t(8;21)(q13.1;q22.3)(chr8:g.67354656::chr21:g.42875000)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ADHFE1:TMPRSS2}	0	NA	0	30	10	33
P-0043615-T01-IM6	SOMATIC	SMARCB1	SMARCB1	22	8	24175790	101422122	Exon 8 of SMARCB1(+)	IGR: 27Kb before MIR4471(+)	GRCh37	TRANSLOCATION	SMARCB1 (NM_003073) rearrangement: t(8;22)(q22.2;q11.23)(chr8:g.101422122::chr22:g.24175790)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	19	0	36
P-0043633-T01-IM6	SOMATIC	MDC1	MDC1	6	6	30666783	30682869	Promoter of MDC1(-):800bp from tx start	Exon 2 of MDC1(-)	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.84:MDC1_chr6:g.30666783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16086	NA	0	27	10	28
P-0043636-T01-IM6	SOMATIC	POLE	POLE	17	12	4266797	133263887	Intron of UBE2G1(-):3Kb after exon 1	Exon 1 of POLE(-)	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(12;17)(q24.33;p13.2)(chr12:g.133263887::chr17:g.4266797)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	58	10	58
P-0043660-T01-IM6	SOMATIC	ARID1B	CDKN2A	9	6	21968863	157398404	Intron of CDKN2A(-):622bp before exon 3	Intron of ARID1B(+):7Kb before exon 6	GRCh37	TRANSLOCATION	ARID1B (NM_020732) - CDKN2A (NM_000077) rearrangement: t(6;9)(q25.3;p21.3)(chr6:g.157398404::chr9:g.21968863)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ARID1B:CDKN2A}	0	NA	0	14	10	14
P-0043671-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40039999	42878373	IGR: 71Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+1504:TMPRSS2_chr21:g.40039999del	PRECISE		MANUAL_OK	3to5	-	2838374	NA	0	47	10	50
P-0043698-T01-IM6	SOMATIC	TP53	SUPT3H	17	6	7579660	45270502	Intron of TP53(-):39bp after exon 3	Intron of SUPT3H(-):19Kb after exon 4	GRCh37	TRANSLOCATION	TP53 (NM_000546) - SUPT3H (NM_003599) rearrangement: t(6;17)(p21.1;p13.1)(chr6:g.45270502::chr17:g.7579660)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TP53:SUPT3H}	0	NA	0	28	10	28
P-0043778-T01-IM6	SOMATIC	ATM	ATM	11	11	108139598	108143263	Intron of ATM(+):262bp after exon 18	Exon 21 of ATM(+)	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.2838+262_c.3082del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3665	NA	0	2	4	2
P-0043785-T01-IM6	SOMATIC	KIT	KIT	4	4	55562916	55564537	Intron of KIT(+):969bp after exon 2	Exon 3 of KIT(+)	GRCh37	INVERSION	KIT (NM_000222) rearrangement: c.337+969_c.425inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1621	NA	0	22	10	22
P-0043804-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55112731	55222277	Intron of EGFR(+):26Kb after exon 1	Intron of EGFR(+):432bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+25673_c.889+432del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	109546	NA	0	80	10	296
P-0043836-T01-IM6	SOMATIC	TRA2B	BRAF	7	3	140491978	185650761	Intron of BRAF(-):2Kb after exon 8	Intron of TRA2B(-):5Kb after exon 1	GRCh37	TRANSLOCATION	TRA2B (NM_004593) - BRAF (NM_004333) fusion: t(3;7)(q27.2;q34)(chr3:g.185650761::chr7:g.140491978)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TRA2B:BRAF}	0	NA	0	22	10	20
P-0043839-T01-IM6	SOMATIC	ICOSLG	ICOSLG	21	21	45649014	45682534	Intron of ICOSLG(-):87bp before exon 7	Promoter of DNMT3L(-):16Kb from tx start	GRCh37	INVERSION	ICOSLG (NM_015259) rearrangement: c.899-87:ICOSLG_chr21:g.45682534inv	PRECISE		MANUAL_OK	3to3	-	33520	NA	0	16	10	16
P-0043868-T01-IM6	SOMATIC	TET2	TET2	4	4	105889922	106197249	IGR: 177Kb before TET2(+)	Exon 11 of TET2(+)	GRCh37	DELETION	TET2 (NM_001127208) rearrangement: c.5582:TET2_chr4:g.105889922del	PRECISE		MANUAL_OK	3to5	-	307327	NA	0	5	6	5
P-0044010-T01-IM6	SOMATIC	RRAS2	RRAS2	11	11	14300978	45787087	Intron of RRAS2(-):8bp before exon 6	IGR: 6Kb before DKFZp779M0652(+)	GRCh37	INVERSION	RRAS2 (NM_012250) rearrangement: c.528-8:RRAS2_chr11:g.45787087inv	PRECISE		MANUAL_OK	3to3	-	31486109	NA	0	13	10	21
P-0044010-T01-IM6	SOMATIC	ABCC1	HNF1A	16	12	16232122	121416656	Intron of ABCC1(+):98bp before exon 30	Exon 1 of HNF1A(+)	GRCh37	TRANSLOCATION	ABCC1 (NM_004996) - HNF1A (NM_000545) rearrangement: t(12;16)(q24.31;p13.11)(chr12:g.121416656::chr16:g.16232122)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ABCC1:HNF1A}	0	NA	0	5	6	5
P-0044024-T01-IM6	SOMATIC	EGFL7	EGFL7	9	9	139517560	139564178	IGR: 36Kb before EGFL7(+)	Intron of EGFL7(+):5bp after exon 4	GRCh37	INVERSION	EGFL7 (NM_201446) rearrangement: c.313+5:EGFL7_chr9:g.139517560inv	PRECISE		MANUAL_OK	3to3	-	46618	NA	0	130	10	128
P-0044065-T01-IM6	SOMATIC	CSDE1	CSDE1	4	1	146051831	115263350	Promoter of OTUD4(-):3Kb from tx start	Intron of CSDE1(-):12bp before exon 18	GRCh37	TRANSLOCATION	CSDE1 (NM_001242891) rearrangement: t(1;4)(p13.2;q31.21)(chr1:g.115263350::chr4:g.146051831)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {OTUD4:CSDE1}	0	NA	0	26	10	26
P-0044065-T01-IM6	SOMATIC	EIF4E	METAP1	4	4	99850164	99861763	5-UTR of EIF4E(-):48Kb before coding start	IGR: 55Kb before METAP1(+)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	-	11599	NA	0	19	10	22
P-0044218-T01-IM6	SOMATIC	OSBPL2	TMPRSS2	21	20	42872237	60866051	Intron of TMPRSS2(-):2Kb before exon 2	Intron of OSBPL2(+):707bp before exon 13	GRCh37	TRANSLOCATION	OSBPL2 (NM_144498) - TMPRSS2 (NM_001135099) rearrangement: t(20;21)(q13.33;q22.3)(chr20:g.60866051::chr21:g.42872237)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {OSBPL2:TMPRSS2}	0	NA	0	12	10	15
P-0044218-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39863913	42871786	Intron of ERG(-):6Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-1670:TMPRSS2_c.18+6374:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007873	NA	0	22	10	25
P-0044334-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139396992	139402673	Intron of NOTCH1(-):52bp before exon 28	Intron of NOTCH1(-):10bp after exon 20	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.3325+11_c.5168-52del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	5681	NA	0	282	10	309
P-0044403-T01-IM6	SOMATIC	STK11	STK11	19	19	1207081	1222967	Exon 1 of STK11(+)	Intron of STK11(+):16bp before exon 8	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.169_c.921-17inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15886	NA	0	108	10	107
P-0044503-T01-IM6	SOMATIC	KDM5A	KDM5A	12	7	465570	125904725	Intron of KDM5A(-):27bp after exon 6	IGR: 174Kb before GRM8(-)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(7;12)(q31.33;p13.33)(chr7:g.125904725::chr12:g.465570)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	6	0	6
P-0044548-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36223987	36226629	Exon 28 of KMT2B(+)	Intron of KMT2B(+):961bp before exon 31	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.6537_c.7160-962inv	PRECISE		MANUAL_OK	5to5	-	2642	NA	0	7	10	10
P-0044551-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29683586	128655556	Intron of EWSR1(+):463bp after exon 8	Intron of FLI1(+):4Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128655556::chr22:g.29683586)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	2	6	10	4
P-0044579-T01-IM6	SOMATIC	MAP3K1	MAP3K1	5	1	56152501	120024255	Exon 2 of MAP3K1(+)	IGR: 26Kb before HSD3B1(+)	GRCh37	TRANSLOCATION	MAP3K1 (NM_005921) rearrangement: t(1;5)(p12;q11.2)(chr1:g.120024255::chr5:g.56152501)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	9
P-0044579-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21994489	22070476	5-UTR of CDKN2A(-):23Kb before coding start	5-UTR of CDKN2B-AS1(+):51Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.-36G>A:CDKN2Ap14ARF_chr9.g:22070476del	PRECISE		MANUAL_OK	3to5	-	75987	NA	0	11	10	11
P-0044808-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49416375	49423229	Exon 51 of KMT2D(-)	Exon 43 of KMT2D(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.14030_c.16336dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6854	NA	0	160	10	176
P-0044826-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684171	32416366	Intron of EWSR1(+):423bp before exon 9	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416366::chr22:g.29684171)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	73	10	72
P-0044831-T01-IM6	SOMATIC	NF1	NF1	17	17	29527398	29542905	Intron of NF1(+):41bp before exon 9	Intron of NF1(+):1Kb after exon 13	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.889-42_c.1527+1302dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	15507	NA	0	7	0	7
P-0044831-T01-IM6	SOMATIC	MST1R	MST1R	3	3	49935286	49938426	Intron of MST1R(-):168bp before exon 6	Intron of MST1R(-):1Kb after exon 1	GRCh37	DUPLICATION	MST1R (NM_002447) rearrangement: c.1230+1387_c.1881-168dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	3140	NA	0	18	10	18
P-0044862-T01-IM6	SOMATIC	GLI1	KIF5A	12	12	57860121	57964305	Exon 8 of GLI1(+)	Intron of KIF5A(+):360bp after exon 12	GRCh37	DELETION	GLI1 (NM_005269) - KIF5A (NM_004984) rearrangement: c.861:GLI1_c.1293+360:KIF5Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GLI1:KIF5A}	104184	NA	0	2	9	2
P-0044901-T01-IM6	SOMATIC	MSH3	MSH3	8	5	5131831	80024703	IGR: 1Mb before LOC100287015(-)	Exon 10 of MSH3(+)	GRCh37	TRANSLOCATION	MSH3 (NM_002439) rearrangement: t(5;8)(q14.1;p23.2)(chr5:g.80024703::chr8:g.5131831)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	35	10	37
P-0044919-T01-IM6	SOMATIC	TSC1	TSC1	11	9	30603418	135778054	5-UTR of MPPED2(-):193Kb before coding start	Exon 18 of TSC1(-)	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(9;11)(q34.13;p14.1)(chr9:g.135778054::chr11:g.30603418)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	34	10	41
P-0045237-T01-IM6	SOMATIC	TBX3	TBX3	12	12	115112475	116583171	Exon 7 of TBX3(-)	Intron of MED13L(-):34Kb before exon 3	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.1265:TBX3_chr12:g.116583171inv	PRECISE		MANUAL_OK	3to3	-	1470696	NA	0	10	10	10
P-0045237-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39865172	42873544	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) rearrangement: c.56-3428:TMPRSS2_c.18+5115:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3008372	NA	0	5	0	5
P-0045950-T01-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38161944	38166224	Intron of WHSC1L1(-):160bp after exon 14	Intron of WHSC1L1(-):3Kb before exon 13	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.2243-3261_c.2611+161inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4280	NA	0	4	10	4
P-0046024-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27029995	27105960	Intron of ARID1A(+):6Kb after exon 1	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+5964_c.5571del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	75965	NA	0	55	10	62
P-0046999-T01-IM6	SOMATIC	NBN	NBN	8	8	90963385	90965617	Intron of NBN(-):2Kb after exon 11	Exon 11 of NBN(-)	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.1700_c.1845+2087del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2232	NA	0	45	10	45
P-0047733-T01-IM6	SOMATIC	RAD54L	RAD54L	15	1	83977494	46715587	IGR: 53Kb before BNC1(-)	Intron of RAD54L(+):84bp before exon 4	GRCh37	TRANSLOCATION	RAD54L (NM_001142548) rearrangement: t(1;15)(p34.1;q25.2)(chr1:g.46715587::chr15:g.83977494)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	58	10	58
P-0047733-T01-IM6	SOMATIC	NF1	NF1	17	17	29664394	29677196	Exon 43 of NF1(+)	Intron of NF1(+):4bp before exon 50	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.6436_c.7322-5dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	12802	NA	0	178	10	181
P-0047736-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41264128	41266487	5-UTR of CTNNB1(+):1Kb before coding start	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.284:CTNNB1_chr3:g.41264128del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2359	NA	0	5	10	5
P-0051721-T01-IM6	SOMATIC	BRCA2	BRCA2	13	13	32911047	32913428	Exon 11 of BRCA2(+)	Exon 11 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.2555_c.4936inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2381	NA	0	2	8	1
P-0051781-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610377	61651178	Intron of RET(+):193bp after exon 11	Intron of CCDC6(-):15Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+14702:CCDC6_c.2136+193:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18040801	NA	0	8	10	11
P-0051864-T01-IM6	SOMATIC	CLTC	ALK	17	2	57770376	29448839	Intron of CLTC(+):712bp before exon 32	Intron of ALK(-):408bp before exon 19	GRCh37	TRANSLOCATION	CLTC (NM_004859) - ALK (NM_004304) fusion: t(2;17)(p23.2;q23.1)(chr2:g.29448839::chr17:g.57770376)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CLTC:ALK}	0	NA	0	60	10	60
P-0054048-T01-IM6	SOMATIC	GOLGA3	POLE	12	12	133241981	133372834	Exon 21 of POLE(-)	Intron of GOLGA3(-):28bp before exon 11	GRCh37	DELETION	GOLGA3 (NM_005895) - POLE (NM_006231) rearrangement: c.2101-28:GOLGA3_c.2375:POLEdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GOLGA3:POLE}	130853	NA	0	21	10	22
P-0061872-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32282412	32918571	IGR: 31Kb before RXFP2(+)	Intron of BRCA2(+):123bp before exon 12	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.6842-124:BRCA2_chr13:g.32282412del	PRECISE		MANUAL_OK	3to5	-	636159	NA	0	19	10	19
P-0061879-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39879951	42874018	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3902:TMPRSS2_c.40-62407:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2994067	NA	0	34	10	33
P-0061879-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42839938	42843292	Intron of TMPRSS2(-):125bp before exon 13	Intron of TMPRSS2(-):440bp after exon 10	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.1186+441_c.1426-125del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	3354	NA	0	13	10	13
P-0061880-T01-IM7	SOMATIC	BRD4	AKT2	19	19	15359252	40740959	Intron of BRD4(-):4Kb before exon 12	Exon 13 of AKT2(-)	GRCh37	DUPLICATION	BRD4 (NM_058243) - AKT2 (NM_001626) rearrangement: c.2159-3679:BRD4_c.1359:AKT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRD4:AKT2}	25381707	NA	0	2	7	2
P-0061887-T01-IM7	SOMATIC	KDR	KDR	4	4	55970706	55973479	Intron of KDR(-):103bp after exon 13	Intron of KDR(-):424bp after exon 10	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.1412+425_c.1987+104inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2773	NA	0	25	10	29
P-0061888-T01-IM7	SOMATIC	BAIAP2	ARHGAP35	19	17	47503366	79080673	Intron of ARHGAP35(+):221bp before exon 6	Exon 12 of BAIAP2(+)	GRCh37	TRANSLOCATION	BAIAP2 (NM_017450) - ARHGAP35 (NM_004491) rearrangement: t(17;19)(q25.3;q13.32)(chr17:g.79080673::chr19:g.47503366)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BAIAP2:ARHGAP35}	0	NA	0	7	10	7
P-0061892-T01-IM7	SOMATIC	TP63	TP63	3	3	189341816	189456301	IGR: 7Kb before TP63(+)	Intron of TP63(+):129bp before exon 3	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.192-130:TP63_chr3:g.189341816del	PRECISE		MANUAL_OK	3to5	-	114485	NA	0	5	10	5
P-0061893-T01-IM7	SOMATIC	RAF1	DIP2B	12	3	51095587	12645467	Intron of DIP2B(+):2Kb before exon 20	Intron of RAF1(-):167bp after exon 7	GRCh37	TRANSLOCATION	RAF1 (NM_002880) - DIP2B (NM_173602) rearrangement: t(3;12)(p25.2;q13.12)(chr3:g.12645467::chr12:g.51095587)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RAF1:DIP2B}	0	NA	0	8	10	9
P-0061896-T01-IM7	SOMATIC	MINPP1	PTEN	10	10	89275566	89692938	Intron of MINPP1(+):7Kb after exon 2	Exon 5 of PTEN(+)	GRCh37	DELETION	MINPP1 (NM_004897) - PTEN (NM_000314) rearrangement: c.933+2588:MINPP1_c.422:PTENdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MINPP1:PTEN}	417372	NA	0	5	10	5
P-0061898-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39856994	42878899	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):977bp after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+978:TMPRSS2_c.18+13293:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3021905	NA	0	69	10	69
P-0061928-T01-IM7	SOMATIC	TBX3	TMEM132C	12	12	115109924	128905080	Exon 8 of TBX3(-)	Intron of TMEM132C(+):5Kb after exon 2	GRCh37	INVERSION	TBX3 (NM_016569) - TMEM132C (NM_001136103) rearrangement: c.1954:TBX3_c.974+4915:TMEM132Cinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TBX3:TMEM132C}	13795156	NA	0	17	0	18
P-0061934-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	5	42868051	132239622	Intron of TMPRSS2(-):2Kb before exon 3	Intron of AFF4(-):437bp after exon 6	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(5;21)(q31.1;q22.3)(chr5:g.132239622::chr21:g.42868051)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	5	10	7
P-0061935-T01-IM7	SOMATIC	BRAF	BRAF	7	1	140491567	205641409	Intron of BRAF(-):3Kb after exon 8	5-UTR of SLC45A3(-):13Kb before coding start	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(1;7)(q32.1;q34)(chr1:g.205641409::chr7:g.140491567)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {BRAF:SLC45A3}	0	NA	0	29	10	29
P-0027661-T06-IM7	SOMATIC	MICU1	TRAF2	10	9	74251821	139820055	Intron of MICU1(-):15Kb before exon 7	Intron of TRAF2(+):79bp before exon 11	GRCh37	TRANSLOCATION	MICU1 (NM_006077) - TRAF2 (NM_021138) rearrangement: t(9;10)(q34.3;q22.1)(chr9:g.139820055::chr10:g.74251821)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MICU1:TRAF2}	0	NA	0	21	10	24
P-0027661-T06-IM7	SOMATIC	RNF43	RNF43	17	17	56437414	56441495	Intron of RNF43(-):95bp after exon 8	Intron of RNF43(-):534bp before exon 4	GRCh37	DUPLICATION	RNF43 (NM_017763) rearrangement: c.376-534_c.952+96dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	4081	NA	0	73	10	72
P-0027661-T06-IM7	SOMATIC	CDK12	CDK12	X	17	5859460	37686273	Intron of NLGN4X(-):32Kb before exon 4	Intron of CDK12(+):583bp before exon 14	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(17;X)(q12;p22.32)(chr17:g.37686273::chrX:g.5859460)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	10	10	8
P-0061956-T01-IM7	SOMATIC	ZXDA	AR	X	X	58436512	66788888	IGR: 505Kb before ZXDA(-)	Intron of AR(+):22Kb after exon 1	GRCh37	INVERSION	AR (NM_000044) rearrangement: c.1616+22284:AR_chrX:g.58436512inv	PRECISE		MANUAL_OK	3to3	-	8352376	NA	0	49	10	49
P-0061957-T01-IM7	SOMATIC	CCNL2	NADK	1	1	1329716	1685992	Intron of CCNL2(-):876bp before exon 5	Exon 10 of NADK(-)	GRCh37	DELETION		PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NADK:CCNL2}	356276	NA	0	24	10	24
P-0061972-T01-IM7	SOMATIC	HGF	HGF	7	1	81381464	10446320	Exon 5 of HGF(-)	IGR: 13Kb before PGD(+)	GRCh37	TRANSLOCATION	HGF (NM_000601) rearrangement: t(1;7)(p36.22;q21.11)(chr1:g.10446320::chr7:g.81381464)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	6	8	6
P-0061977-T01-IM7	SOMATIC	MEN1	MEN1	11	11	64574526	65179364	Exon 6 of MEN1(-)	3-UTR of FRMD8(+):25Kb after coding stop	GRCh37	DELETION	MEN1 (NM_000244) rearrangement: c.884:MEN1_chr11:g.65179364del	PRECISE		MANUAL_OK	3to5	-	604838	NA	0	23	10	29
P-0061983-T01-IM7	SOMATIC	NF1	NF1	17	4	29486264	40069433	Intron of NF1(+):153bp after exon 3	5-UTR of N4BP2(+):30Kb before coding start	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(4;17)(p14;q11.2)(chr4:g.40069433::chr17:g.29486264)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	17	10	17
P-0062027-T01-IM7	SOMATIC	MGA	STARD9	15	15	42032171	42973387	Intron of MGA(+):79bp before exon 14	Intron of STARD9(+):232bp before exon 21	GRCh37	DELETION	MGA (NM_001164273) - STARD9 (NM_020759) rearrangement: c.4435-80:MGA_c.1875-233:STARD9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MGA:STARD9}	941216	NA	0	9	10	10
P-0062034-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	78477459	78519602	IGR: 37Kb before NPTX1(-)	Intron of RPTOR(+):11bp after exon 1	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.162+11:RPTOR_chr17:g.78477459del	PRECISE		MANUAL_OK	3to5	-	42143	NA	0	19	10	19
P-0062034-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	31515147	44213395	Exon 7 of DROSHA(-)	IGR: 92Kb before FGF10(-)	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.1238:DROSHA_chr5:g.44213395del	PRECISE		MANUAL_OK	3to5	-	12698248	NA	0	24	10	24
P-0062040-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37025569	37657451	Promoter of LASP1(+):542bp from tx start	Intron of CDK12(+):51bp before exon 6	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.2420-52:CDK12_chr17:g.37025569del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {LASP1:CDK12}	631882	NA	0	6	0	8
P-0000115-T02-IM7	SOMATIC	CARM1	GARNL3	19	9	11030349	130056031	Exon 9 of CARM1(+)	Intron of GARNL3(+):3Kb after exon 2	GRCh37	TRANSLOCATION	CARM1 (NM_199141) - GARNL3 (NM_032293) rearrangement: t(9;19)(q33.3;p13.2)(chr9:g.130056031::chr19:g.11030349)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CARM1:GARNL3}	0	NA	0	85	10	87
P-0000115-T02-IM7	SOMATIC	ERG	ERG	21	21	39775646	40439935	Intron of ERG(-):15bp before exon 4	IGR: 94Kb before LOC101928435(-)	GRCh37	INVERSION	ERG (NM_182918) rearrangement: c.389-15:ERG_chr21:g.40439935inv	PRECISE		MANUAL_OK	5to5	-	664289	NA	0	12	10	15
P-0039971-T02-IM7	SOMATIC	IGF1R	IGF1R	15	15	99401539	99459986	Intron of IGF1R(+):33Kb before exon 3	Exon 10 of IGF1R(+)	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.641-33015_c.2082del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	58447	NA	0	4	7	4
P-0047181-T07-IM7	SOMATIC	SMARCB1	SMARCB1	22	22	24129582	30914612	Intron of SMARCB1(+):133bp after exon 1	IGR: 6Kb before SEC14L6(-)	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.93+133:SMARCB1_chr22:g.30914612del	PRECISE		MANUAL_OK	3to5	-	6785030	NA	0	15	10	15
P-0057559-T02-IM7	SOMATIC	CREBBP	CREBBP	16	16	3900964	3920472	Exon 2 of CREBBP(-)	Intron of CREBBP(-):9Kb after exon 1	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.85+9361_c.132del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19508	NA	0	34	10	36
P-0057559-T02-IM7	SOMATIC	FGFR3	CTBP1	4	4	1223628	1808812	Intron of CTBP1(-):1Kb before exon 4	Intron of FGFR3(+):30bp before exon 18	GRCh37	INVERSION	FGFR3 (NM_000142) - CTBP1 (NM_001328) fusion: c.2275-31:FGFR3_c.196-1497:CTBP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FGFR3:CTBP1}	585184	NA	0	5	9	5
P-0058083-T01-IM7	SOMATIC	RASA2	RHOA	3	3	49397657	141246400	Exon 5 of RHOA(-)	Intron of RASA2(+):2Kb before exon 4	GRCh37	INVERSION	RASA2 (NM_006506) - RHOA (NM_001664) rearrangement: c.356-2150:RASA2_c.567:RHOAinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RASA2:RHOA}	91848743	NA	0	5	9	5
P-0060327-T03-IM7	SOMATIC	ETV6	ETV6	12	2	12035779	229760755	Intron of ETV6(+):2Kb before exon 6	IGR: 128Kb before PID1(-)	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(2;12)(q36.3;p13.2)(chr2:g.229760755::chr12:g.12035779)	IMPPRECISE		MANUAL_OK	5to3	-	0	NA	0	8	0	8
P-0060327-T03-IM7	SOMATIC	TP53	TP53	17	17	4991943	7583482	5-UTR of ZFP3(+):3Kb before coding start	5-UTR of TP53(-):11Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-28-3542_g.4991943del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2591539	NA	0	39	10	59
P-0060327-T03-IM7	SOMATIC	ALOX12B	ALOX12B	17	17	7404051	7976559	Exon 11 of POLR2A(+)	Exon 14 of ALOX12B(-)	GRCh37	DELETION	ALOX12B (NM_001139) rearrangement: c.1833:ALOX12B_chr17:g.7404051del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	572508	NA	0	122	10	127
P-0061711-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11170861	11172458	Exon 35 of SMARCA4(+)	Intron of SMARCA4(+):1bp before exon 36	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4909_c.4912-2del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1597	NA	0	3	3	3
P-0121494-T01-IM7	SOMATIC	STAT3	ABR	17	17	1082993	40475432	Exon 1 of ABR(-)	Intron of STAT3(-):60bp before exon 19	GRCh37	DELETION	STAT3 (NM_139276) - ABR (NM_021962) rearrangement: c.1654-60:STAT3_c.29:ABRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAT3:ABR}	39392439	NA	0	28	10	28
P-0061967-T01-IM7	SOMATIC	BTK	BTK	X	X	100535302	100612538	Intron of TAF7L(-):1Kb before exon 7	Exon 13 of BTK(-)	GRCh37	INVERSION	BTK (NM_000061) rearrangement: c.1136:BTK_chrX:g.100535302inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	77236	NA	0	32	0	36
P-0061969-T01-IM7	SOMATIC	SLFN11	SLFN11	17	10	33679506	8271094	Exon 6 of SLFN11(-)	IGR: 30Kb before LINC00708(-)	GRCh37	TRANSLOCATION	SLFN11 (NM_001104589) rearrangement: t(10;17)(p14;q12)(chr10:g.8271094 ::chr17:g.33679506)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	19	10	21
P-0061969-T01-IM7	SOMATIC	CARM1	CARM1	19	1	11032313	41183348	Exon 16 of CARM1(+)	5-UTR of NFYC(+):21Kb before coding start	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(1;19)(p34.2;p13.2)(chr1:g.41183348::chr19:g.11032313)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NFYC:CARM1}	0	NA	0	17	10	17
P-0061995-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42855633	42878954	Intron of TMPRSS2(-):3Kb before exon 6	Intron of TMPRSS2(-):922bp after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.55+923_c.557-3104inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	23321	NA	0	54	10	57
P-0061995-T01-IM7	SOMATIC	AR	AR	X	X	66936210	66943426	Intron of AR(+):1Kb before exon 5	Intron of AR(+):101bp before exon 8	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-1110_c.2608-102del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	7216	NA	0	36	10	38
P-0061999-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32929735	32945242	Intron of BRCA2(+):310bp after exon 14	Intron of BRCA2(+):5bp after exon 20	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.7435+310_c.8632+5inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	15507	NA	0	7	8	7
P-0062019-T01-IM7	SOMATIC	NF1	NF1	17	17	29483297	29490244	Intron of NF1(+):153bp after exon 2	Exon 4 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.204+153_c.329del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6947	NA	0	45	10	45
P-0062019-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	149514474	149537919	Exon 4 of PDGFRB(-)	Promoter of PDGFRB(-):45Kb from tx start	GRCh37	DELETION	PDGFRB (NM_002609) rearrangement: c.470:PDGFRB_chr5:g.149537919del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	23445	NA	0	9	10	9
P-0058149-T01-IM7	SOMATIC	TNRC6B	PBRM1	22	3	40698426	52597392	Intron of TNRC6B(+):1Kb after exon 15	Exon 25 of PBRM1(-)	GRCh37	TRANSLOCATION	TNRC6B (NM_001162501) - PBRM1 (NM_018313) rearrangement: t(3;22)(p21.1;q13.1)(chr3:g.52597392::chr22:g.40698426)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TNRC6B:PBRM1}	0	NA	0	10	10	16
P-0061239-T02-IM7	SOMATIC	ALK	ALK	4	2	145784470	29446446	IGR: 131Kb before ANAPC10(-)	Intron of ALK(-):52bp before exon 20	GRCh37	TRANSLOCATION	ALK (NM_004304) rearrangement: t(2;4)(p23.2;q31.21)(chr2:g.29446446::chr4:g.145784470)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	40	10	40
P-0062173-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39874642	42872757	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2641:TMPRSS2_chr21:g.39874642del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2998115	NA	0	40	10	40
P-0062212-T01-IM7	SOMATIC	EZH1	EZH1	17	17	17294794	40865250	IGR: 86Kb before MED9(+)	Exon 11 of EZH1(-)	GRCh37	INVERSION	EZH1 (NM_001991) rearrangement: c.1181:EZH1_chr17:g.17294794inv	PRECISE		MANUAL_OK	3to3	-	23570456	NA	0	42	10	42
P-0062212-T01-IM7	SOMATIC	KEAP1	KEAP1	19	19	10305906	10597411	Promoter of DNMT1(-):62Kb from tx start	Exon 6 of KEAP1(-)	GRCh37	DUPLICATION	KEAP1 (NM_203500) rearrangement: c.1792:KEAP1_chr19:g.10305906dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT1:KEAP1}	291505	NA	0	53	10	54
P-0055135-T02-IM7	SOMATIC	PTEN	PTEN	10	10	89623779	89647217	5-UTR of PTEN(+):447bp before coding start	Intron of PTEN(+):7Kb before exon 2	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-6565:PTEN_chr10:g.89623779del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	23438	NA	0	33	10	34
P-0061635-T02-IM7	SOMATIC	FGF4	FGF4	11	11	69589350	69590251	Intron of FGF4(-):162bp after exon 1	Promoter of FGF4(-):2Kb from tx start	GRCh37	INVERSION	FGF4 (NM_002007) rearrangement: c.340+163:FGF4_chr11:g.69590251inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	901	NA	0	4	0	4
P-0062066-T01-IM7	SOMATIC	ERBB3	ERBB3	12	12	56434902	56478915	Promoter of RPS26(+):783bp from tx start	Exon 3 of ERBB3(+)	GRCh37	INVERSION	ERBB3 (NM_001982) rearrangement: c.371:ERBB3_chr12:g.56434902inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	44013	NA	0	7	8	7
P-0062070-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138538079	140490443	Intron of KIAA1549(-):1Kb before exon 17	Intron of BRAF(-):3Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5248-1064:KIAA1549_c.1141-3059:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1952364	NA	0	56	10	56
P-0062153-T01-IM7	SOMATIC	ASXL2	ASXL2	2	2	25972655	52460875	Exon 11 of ASXL2(-)	IGR: 1Mb before ASB3(-)	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.1770:ASXL2_chr2:g.52460875del	PRECISE		MANUAL_OK	3to5	-	26488220	NA	0	41	10	42
P-0005832-T03-IM7	SOMATIC	MUTYH	OSBPL9	1	1	45797002	52181051	Exon 14 of MUTYH(-)	Intron of OSBPL9(+):1Kb after exon 4	GRCh37	INVERSION	MUTYH (NM_001128425) - OSBPL9 (NM_148909) rearrangement: c.1328:MUTYH_c.318+1300:OSBPL9inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MUTYH:OSBPL9}	6384049	NA	0	8	10	12
P-0005832-T03-IM7	SOMATIC	NF1	NF1	17	17	29542573	57371683	Intron of NF1(+):970bp after exon 13	IGR: 37Kb before YPEL2(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.1527+970:NF1_chr17:g.57371683inv	PRECISE		MANUAL_OK	5to5	-	27829110	NA	0	3	6	3
P-0005832-T03-IM7	SOMATIC	NOTCH1	AGPAT2	9	9	139400890	139577712	Intron of NOTCH1(-):88bp after exon 24	Intron of AGPAT2(-):4Kb after exon 1	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - AGPAT2 (NM_006412) rearrangement: c.4014+89:NOTCH1_c.182+3916:AGPAT2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NOTCH1:AGPAT2}	176822	NA	0	2	5	2
P-0006130-T03-IM7	SOMATIC	MAP3K10	BCL2L11	19	2	40707199	111884237	Intron of MAP3K10(+):3Kb after exon 2	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	TRANSLOCATION	MAP3K10 (NM_002446) - BCL2L11 (NM_138621) rearrangement: t(2;19)(q13;q13.2)(chr2:g.111884237::chr19:g.40707199)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MAP3K10:BCL2L11}	0	48	0	7	0	7
P-0007687-T02-IM6	SOMATIC	NTRK1	NTRK1	1	1	156830871	218470640	Exon 1 of NTRK1(+)	Intron of RRP15(+):5Kb before exon 2	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.145:NTRK1_chr1:g.218470640inv	PRECISE		MANUAL_OK	5to5	-	61639769	NA	0	12	10	15
P-0007687-T02-IM6	SOMATIC	SMYD3	SMYD3	1	1	246078874	246142589	Exon 8 of SMYD3(-)	Intron of SMYD3(-):49Kb before exon 6	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.532-49350_c.771del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63715	NA	0	22	10	22
P-0007687-T04-IM6	SOMATIC	NTRK1	NTRK1	1	1	156830871	218470640	Exon 1 of NTRK1(+)	Intron of RRP15(+):5Kb before exon 2	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.145:NTRK1_chr1:g.218470640inv	PRECISE		MANUAL_OK	5to5	-	61639769	NA	0	25	10	29
P-0007687-T04-IM6	SOMATIC	SMYD3	SMYD3	1	1	246078874	246142589	Exon 8 of SMYD3(-)	Intron of SMYD3(-):49Kb before exon 6	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.532-49350_c.771del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63715	NA	0	38	10	38
P-0007687-T05-IM6	SOMATIC	SMYD3	SMYD3	1	1	246078874	246142589	Exon 8 of SMYD3(-)	Intron of SMYD3(-):49Kb before exon 6	GRCh37	DELETION	SMYD3 (NM_001167740) rearrangement: c.532-49350_c.771del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	63715	NA	0	5	8	4
P-0012084-T01-IM5	SOMATIC	NEGR1	NEGR1	1	1	72651476	72748039	Intron of NEGR1(-): 97Kb after exon 1	Exon 1 of NEGR1(-)	GRCh37	DUPLICATION	NEGR1 (NM_173808) rearrangement: c.139_c.176+96526dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript: mid-exon	96563	NA	0	8	20	7
P-0012521-T01-IM5	SOMATIC	BAP1	BAP1	3	3	46240702	52436397	IGR: 2Kb before CCR1(-)	Exon 17 of BAP1(-)	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.2097_chr3:g.52436397inv	PRECISE		MANUAL_OK	3to3	-	6195695	NA	0	23	42	23
P-0012521-T02-IM6	SOMATIC	BAP1	BAP1	3	3	46240702	52436397	Promoter of CCR1(-):2Kb from tx start	Exon 17 of BAP1(-)	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.2097:BAP1_chr3:g.52436397inv	PRECISE		MANUAL_OK	3to3	-	6195695	NA	0	10	10	10
P-0013793-T01-IM5	SOMATIC	NAB2	NAB2	12	12	57486630	72000885	Intron of NAB2(+): 70bp before exon 4	IGR: 2Kb before ZFC3H1(-)	GRCh37	INVERSION	NAB2 (NM_005967) Rearrangement : c.1092-70:NAB2_chr12:g.72000885inv	PRECISE		MANUAL_OK	3to3	-	14514255	NA	0	102	115	195
P-0016238-T03-IM7	SOMATIC	FGFR3	TACC3	4	4	1740775	1808706	Intron of TACC3(+):653bp before exon 11	Intron of FGFR3(+):45bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+45:FGFR3_c.1942-654:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67931	38	0	50	10	72
P-0017427-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29685439	128647411	Intron of EWSR1(+):664bp after exon 9	Intron of FLI1(+):4Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-9 fused to FLI1 exons 5-9) : t(11;22)(q24.3;q12.2)(chr11:g.128647411::chr22:g.29685439)	PRECISE		MANUAL_OK	3to5	-	0	NA	NA	104	10	NA
P-0021327-T01-IM6	SOMATIC	FGFR2	BICC1	10	10	60565699	123240344	Intron of BICC1(+):644bp before exon 16	Intron of FGFR2(-):809bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion (FGFR2 exons 1-17 fused with BICC1 exons 16-21): c.2302-1613:FGFR2_c.237+32254:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62674645	NA	0	28	10	31
P-0021776-T01-IM6	SOMATIC	ERBB2	ERBB2	21	17	21176072	37881392	IGR: 939Kb before LINC00320(-)	Exon 21 of ERBB2(+)	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(17;21)(q12;q21.2)(chr17:g.37881392::chr21:g.21176072)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	45	10	53
P-0021776-T01-IM6	SOMATIC	ATRX	ATRX	X	X	37033335	76889955	IGR: 7Kb before FAM47C(+)	Intron of ATRX(-):129bp after exon 17	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: chrX:g.37033335_c.4809+130:ATRXinv	PRECISE		MANUAL_OK	5to5	-	39856620	NA	0	7	10	7
P-0025675-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15272250	38926895	Exon 33 of NOTCH3(-)	Intron of RYR1(+):2Kb after exon 1	GRCh37	DUPLICATION	NOTCH3 (NM_000435) rearrangement: c.6189_chr19:g.38926895dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	23654645	NA	0	26	10	32
P-0026513-T03-IM7	SOMATIC	PDPK1	PDPK1	16	16	2645795	11661408	Exon 12 of PDPK1(+)	3-UTR of LITAF(-):20Kb after coding stop	GRCh37	DELETION	PDPK1 (NM_002613) rearrangement: c.1345:PDPK1_chr16:g.11661408del	PRECISE		MANUAL_OK	3to5	-	9015613	NA	0	5	10	5
P-0029548-T01-IM6	SOMATIC	PIK3CD	CLSTN1	1	1	9777621	9803081	Exon 8 of PIK3CD(+)	Intron of CLSTN1(-):860bp after exon 9	GRCh37	INVERSION	PIK3CD (NM_005026) - CLSTN1 (NM_001009566) rearrangement: c.957:PIK3CD_c.1356+861:CLSTN1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PIK3CD:CLSTN1}	25460	NA	0	5	10	5
P-0029548-T01-IM6	SOMATIC	BIRC3	BIRC3	11	11	102194911	102199622	5-UTR of BIRC3(+):329bp before coding start	Intron of BIRC3(+):5bp before exon 6	GRCh37	DELETION	BIRC3 (NM_182962) rearrangement: c.-49-281_c.1033-6del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4711	NA	0	113	10	133
P-0033921-T05-IM7	SOMATIC	ETV6	NTRK3	15	12	88516534	12031161	Intron of NTRK3(-):33Kb before exon 15	Intron of ETV6(+):6Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12031161::chr15:g.88516534)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	NA	0	62	10	62
P-0035498-T01-IM6	SOMATIC	SESN3	SESN3	11	11	94898554	94908560	Promoter of SESN3(-):122bp from tx start	Intron of SESN3(-):101bp after exon 9	GRCh37	DELETION	SESN3 (NM_144665) Rearrangement: c.1392+102_c.*7865del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	10006	NA	0	9	10	11
P-0035498-T01-IM6	SOMATIC	PAX 8	PAX 8	17	2	4414421	113987958	Intron of SPNS2(+):2Kb before exon 2	Intron of PAX8(-):3Kb before exon 10	GRCh37	TRANSLOCATION	PAX 8 (NM_003466) Rearrangement: t(2;17)(q13;p13.2)(chr2:g.113987958::chr17:g.4414421)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	111	0	112
P-0035726-T01-IM6	SOMATIC	SESN1	INPP5D	6	2	109415104	234003013	Exon 1 of SESN1(-)	Intron of INPP5D(+):8Kb after exon 5	GRCh37	TRANSLOCATION	SESN1 (NM_014454) - INPP5D (NM_005541) rearrangement: t(2;6)(q37.1;q21)(chr2:g.234003013::chr6:g.109415104)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SESN1:INPP5D}	0	NA	0	6	0	6
P-0036117-T01-IM6	SOMATIC	KMT2B	KMT2B	19	19	36219728	36379015	Exon 20 of KMT2B(+)	Promoter of NFKBID(-):127bp from tx start	GRCh37	INVERSION	KMT2B (NM_014727) rearrangement: c.4625_chr19:g.36379015inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NFKBID:KMT2B}	159287	NA	0	26	10	43
P-0040356-T01-IM6	SOMATIC	CDK12	CDK12	17	17	15112254	37619257	IGR: 21Kb before PMP22(-)	Exon 1 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.933:CDK12_chr17:g.15112254del	PRECISE		MANUAL_OK	3to5	-	22507003	NA	0	29	10	30
P-0042801-T02-IM6	SOMATIC	KCNK13	AKT1	14	14	90533347	105239621	Intron of KCNK13(+):4Kb after exon 1	Exon 10 of AKT1(-)	GRCh37	INVERSION	KCNK13 (NM_022054) - AKT1 (NM_001014431) rearrangement: c.334+4464:KCNK13_c.924:AKT1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KCNK13:AKT1}	14706274	NA	0	117	10	110
P-0043514-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18719991	22631196	Exon 28 of PIK3C2G(+)	Intron of C2CD5(-):50bp after exon 15	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.3888:PIK3C2G_chr12:g.22631196del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3911205	NA	0	48	10	48
P-0043747-T03-IM7	SOMATIC	EIF4A2	EIF4A2	10	3	8785605	186505087	IGR: 454Kb before LOC101928272(-)	Intron of EIF4A2(+):34bp after exon 8	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(3;10)(q27.3;p14)(chr3:g.186505087::chr10:g.8785605)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	10	31
P-0045731-T01-IM6	SOMATIC	NOS1AP	NTRK1	1	1	156843455	162336479	Exon 8 of NTRK1(+)	Intron of NOS1AP(+):362bp before exon 10	GRCh37	DUPLICATION	NOS1AP (NM_014697) - NTRK1 (NM_002529) fusion: c.1106-363:NOS1AP_c.881:NTRK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOS1AP:NTRK1}	5493024	NA	0	156	10	161
P-0046877-T02-IM6	SOMATIC	TPM3	NTRK1	1	1	154142216	156843811	Intron of TPM3(-):357bp before exon 9	Intron of NTRK1(+):60bp after exon 8	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion: c.776-357:TPM3_c.1177+60:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TPM3:NTRK1}	2701595	NA	0	51	10	69
P-0048097-T05-IM7	SOMATIC	NUP98	FH	11	1	3766697	241661251	Intron of NUP98(-):818bp before exon 12	Exon 10 of FH(-)	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;11)(q43;p15.4)(chr1:g.241661251::chr11:g.3766697)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	29	0	31
P-0048150-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	17	6943000	7983482	Intron of SLC16A13(+):81bp before exon 4	Intron of ALOX12B(-):70bp after exon 6	GRCh37	DELETION	ALOX12B (NM_001139) rearrangement: c.754+71:ALOX12B_chr17:g.6943000del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1040482	NA	0	19	10	19
P-0049440-T02-IM6	SOMATIC	EWSR1	EWSR1	22	22	29687911	29689369	Intron of EWSR1(+):214bp before exon 11	Intron of EWSR1(+):774bp after exon 12	GRCh37	DUPLICATION	EWSR1 (NM_013986) rearrangement: c.1028-215_c.1179+774dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1458	NA	0	2	9	2
P-0049942-T01-IM6	SOMATIC	HIST1H3F	HIST1H3F	6	6	26131239	26250495	IGR: 7Kb before HIST1H2AC(+)	Exon 1 of HIST1H3F(-)	GRCh37	DELETION	HIST1H3F (NM_021018) rearrangement: c.339:HIST1H3F_chr6:g.26131239del	PRECISE		MANUAL_OK	3to5	-	119256	NA	0	16	10	17
P-0050707-T02-IM6	SOMATIC	FLT4	FLT4	8	5	60934688	180057397	IGR: 167Kb before CA8(-)	Intron of FLT4(-):60bp before exon 4	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;8)(q35.3;q12.1)(chr5:g.180057397::chr8:g.60934688)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	33	10	33
P-0050931-T01-IM6	SOMATIC	AGK	BRAF	7	7	140499251	141278652	Intron of BRAF(-):910bp after exon 7	Intron of AGK(+):14Kb before exon 3	GRCh37	INVERSION	AGK (NM_018238) - BRAF (NM_004333) fusion: c.102-14294:AGK_c.980+911:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {AGK:BRAF}	779401	NA	0	11	10	11
P-0052330-T01-IM6	SOMATIC	KIF5B	ARID5B	10	10	32312962	63851697	Intron of KIF5B(-):998bp before exon 16	Exon 10 of ARID5B(+)	GRCh37	INVERSION	KIF5B (NM_004521) - ARID5B (NM_032199) rearrangement: c.1726-998:KIF5B_c.2475:ARID5Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:ARID5B}	31538735	NA	0	23	10	29
P-0052625-T01-IM6	SOMATIC	PTPRT	PTPRT	20	17	41306417	4359134	Intron of PTPRT(-):88bp after exon 7	Intron of SPNS3(+):3Kb after exon 8	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(17;20)(p13.2;q12)(chr17:g.4359134::chr20:g.41306417)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	NA	0	14	10	14
P-0052826-T01-IM6	SOMATIC	KIF5B	RET	10	10	32314322	43611182	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):849bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2358:KIF5B_c.2137-850:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296860	NA	0	48	10	61
P-0052826-T01-IM6	SOMATIC	TERT	CTNND2	5	5	1272350	11788950	Exon 7 of TERT(-)	Intron of CTNND2(-):57Kb before exon 2	GRCh37	DUPLICATION	TERT (NM_198253) - CTNND2 (NM_001332) rearrangement: c.2332:TERT_c.38-56566:CTNND2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TERT:CTNND2}	10516600	NA	0	80	10	132
P-0052954-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55182660	55222052	Intron of EGFR(+):27Kb before exon 2	Intron of EGFR(+):207bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-27319_c.889+207del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	39392	NA	0	297	0	843
P-0054788-T02-IM6	SOMATIC	EGFR	EGFR	7	1	55223310	62603676	Intron of EGFR(+):212bp before exon 8	Intron of INADL(+):9Kb after exon 41	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(1;7)(p31.3;p11.2)(chr1:g.62603676::chr7:g.55223310)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	90	10	89
P-0055135-T03-IM7	SOMATIC	PTEN	PTEN	10	10	89623779	89647217	5-UTR of PTEN(+):447bp before coding start	Intron of PTEN(+):7Kb before exon 2	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.80-6565:PTEN_chr10:g.89623779del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	23438	51	0	35	10	40
P-0055135-T03-IM7	SOMATIC	ROS1	COL13A1	10	6	71715849	117658665	Intron of COL13A1(+):910bp before exon 37	Intron of ROS1(-):162bp before exon 31	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - COL13A1 (NM_001130103) rearrangement: t(6;10)(q22.1;q22.1)(chr6:g.117658665::chr10:g.71715849)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ROS1:COL13A1}	0	60	0	18	10	22
P-0055265-T02-IM6	SOMATIC	APC	APC	5	5	112176900	112184670	Exon 16 of APC(+)	Promoter of APC(+):111Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.5609:APC_chr5:g.112184670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7770	NA	0	40	10	48
P-0055318-T01-IM6	SOMATIC	PIK3CB	PIK3CB	16	3	49519913	138376494	IGR: 5Kb before ZNF423(-)	Intron of PIK3CB(-):37bp after exon 20	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;16)(q22.3;q12.1)(chr3:g.138376494::chr16:g.49519913)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	28
P-0055318-T02-IM6	SOMATIC	PIK3CB	PIK3CB	16	3	49519913	138376494	IGR: 5Kb before ZNF423(-)	Intron of PIK3CB(-):37bp after exon 20	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;16)(q22.3;q12.1)(chr3:g.138376494::chr16:g.49519913)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	41	10	49
P-0055342-T05-IM7	SOMATIC	POLE	POLE	12	6	133219206	149525355	Exon 37 of POLE(-)	IGR: 14Kb before TAB2(+)	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(6;12)(q25.1;q24.33)(chr6:g.149525355::chr12:g.133219206)	PRECISE		MANUAL_OK	5to5	-	0	60	0	30	10	31
P-0055342-T05-IM7	SOMATIC	SMYD3	ST7	7	1	116857275	246027221	Intron of ST7(+):2Kb before exon 14	Intron of SMYD3(-):33bp before exon 9	GRCh37	TRANSLOCATION	SMYD3 (NM_001167740) - ST7 (NM_021908) rearrangement: t(1;7)(q44;q31.2)(chr1:g.246027221::chr7:g.116857275)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {SMYD3:ST7}	0	60	0	8	10	8
P-0055399-T01-IM6	SOMATIC	BCOR	BCOR	X	X	39913289	39959925	Exon 14 of BCOR(-)	5-UTR of BCOR(-):49Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.4826:BCOR_chrX:g.39959925del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	46636	NA	0	22	10	25
P-0055472-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189776	55221774	Intron of EGFR(+):20Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-20203_c.818del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	31998	NA	0	113	10	1121
P-0055472-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268594	55270366	Intron of EGFR(+):286bp before exon 25	Intron of EGFR(+):48bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-287_c.3271+48del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	1772	NA	0	63	10	66
P-0056566-T01-IM6	SOMATIC	ERBB2	ERBB2	17	1	37882842	58522628	Exon 24 of ERBB2(+)	5-UTR of DAB1(-):1Mb before coding start	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(1;17)(p32.2;q12)(chr1:g.58522628::chr17:g.37882842)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DAB1:ERBB2}	0	NA	0	9	0	10
P-0056566-T01-IM6	SOMATIC	AATF	HGF	17	7	35343828	81346798	Intron of AATF(+):87bp before exon 5	Intron of HGF(-):117bp before exon 11	GRCh37	TRANSLOCATION	AATF (NM_012138) - HGF (NM_000601) rearrangement: t(7;17)(q21.11;q12)(chr7:g.81346798::chr17:g.35343828)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {AATF:HGF}	0	NA	0	16	10	16
P-0056566-T04-IM7	SOMATIC	AATF	HGF	17	7	35343815	81346809	Intron of AATF(+):100bp before exon 5	Intron of HGF(-):128bp before exon 11	GRCh37	TRANSLOCATION	AATF (NM_012138) - HGF (NM_000601) rearrangement: t(7;17)(q21.11;q12)(chr7:g.81346809::chr17:g.35343815)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {AATF:HGF}	0	NA	0	15	10	15
P-0056670-T04-IM6	SOMATIC	RAC2	RAC2	22	11	37637693	13104046	Exon 2 of RAC2(-)	IGR: 73Kb before RASSF10(+)	GRCh37	TRANSLOCATION	RAC2 (NM_002872) rearrangement: t(11;22)(p15.2;q13.1)(chr11:g.13104046::chr22:g.37637693)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	9	7
P-0057815-T01-IM6	SOMATIC	BAP1	BAP1	12	3	11450524	52438069	IGR: 9Kb before PRB4(-)	Intron of BAP1(-):159bp before exon 13	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;12)(p21.1;p13.2)(chr3:g.52438069::chr12:g.11450524)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	8	10	11
P-0058177-T01-IM6	SOMATIC	RTEL1	RTEL1	20	20	62309398	62612010	Intron of RTEL1(+):99bp before exon 11	Promoter of PRPF6(+):420bp from tx start	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.992-100:RTEL1_chr20:g.62612010inv	PRECISE		MANUAL_OK	5to5	-	302612	NA	0	9	10	11
P-0058177-T01-IM6	SOMATIC	BRAF	BRAF	7	7	140482516	140615913	Intron of BRAF(-):304bp after exon 10	Intron of BRAF(-):8Kb after exon 1	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.138+8453_c.1314+305del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	133397	NA	0	15	10	17
P-0058270-T01-IM6	SOMATIC	TRAF2	TRAF2	17	9	72222072	139802699	Intron of TTYH2(+):3Kb after exon 2	Intron of TRAF2(+):16bp after exon 5	GRCh37	TRANSLOCATION	TRAF2 (NM_021138) rearrangement: t(9;17)(q34.3;q25.1)(chr9:g.139802699::chr17:g.72222072)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	23	10	23
P-0058344-T01-IM6	SOMATIC	KMT2D	LARP4	12	12	49431709	50806158	Exon 34 of KMT2D(-)	Intron of LARP4(+):11Kb after exon 1	GRCh37	INVERSION	KMT2D (NM_003482) - LARP4 (NM_052879) rearrangement: c.9430:KMT2D_c.18+11347:LARP4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:LARP4}	1374449	NA	0	41	10	54
P-0058344-T01-IM6	SOMATIC	SMARCD1	SMARCD1	12	12	50492559	111540568	Exon 12 of SMARCD1(+)	Intron of CUX2(+):69Kb after exon 1	GRCh37	INVERSION	SMARCD1 (NM_003076) rearrangement: c.1455:SMARCD1_chr12:g.111540568inv	PRECISE		MANUAL_OK	5to5	-	61048009	NA	0	20	10	27
P-0058344-T01-IM6	SOMATIC	TP53	TP53	17	16	7579323	71814722	Exon 4 of TP53(-)	Intron of AP1G1(-):6Kb before exon 3	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(16;17)(q22.2;p13.1)(chr16:g.71814722::chr17:g.7579323)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	37	10	51
P-0058344-T01-IM6	SOMATIC	POLD1	POLD1	19	5	50902291	7122183	Exon 2 of POLD1(+)	IGR: 147Kb before MIR4454(-)	GRCh37	TRANSLOCATION	POLD1 (NM_002691) rearrangement: t(5;19)(p15.31;q13.33)(chr5:g.7122183::chr19:g.50902291)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	88	10	91
P-0058344-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	20	19	29529638	52719998	IGR: 82Kb before FRG1B(+)	Intron of PPP2R1A(+):82bp after exon 9	GRCh37	TRANSLOCATION	PPP2R1A (NM_014225) rearrangement: t(19;20)(q13.41;q11.21)(chr19:g.52719998::chr20:g.29529638)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	13	10	13
P-0058393-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33288631	33293006	Exon 3 of DAXX(-)	Promoter of DAXX(-):7Kb from tx start	GRCh37	DELETION	DAXX (NM_001141970) rearrangement: c.957:DAXX_chr6:g.33293006del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4375	NA	0	16	10	20
P-0058564-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39853119	42871142	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1026:TMPRSS2_c.18+17168:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3018023	NA	0	82	10	85
P-0059067-T03-IM7	SOMATIC	WT1	EWSR1	22	11	29684537	32426133	Intron of EWSR1(+):57bp before exon 9	Intron of WT1(-):5Kb before exon 6	GRCh37	TRANSLOCATION	WT1 (NM_024426) - EWSR1 (NM_013986) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32426133::chr22:g.29684537)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {WT1:EWSR1}	0	60	0	48	10	72
P-0059652-T01-IM7	SOMATIC	TP53	TP53	17	17	7577027	7582881	Exon 8 of TP53(-)	5-UTR of TP53(-):10Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.911:TP53_chr17:g.7582881inv	PRECISE		MANUAL_OK	3to3	-	5854	NA	0	9	10	11
P-0060165-T01-IM7	SOMATIC	TERT	TERT	5	5	1295994	4230573	Promoter of TERT(-):43Kb from tx start	IGR: 543Kb before LOC101929153(+)	GRCh37	DELETION	TERT (NM_198253) Rearrangement : c.-890_chr5:g.4230573del	IMPPRECISE		MANUAL_OK	3to5	-	2934579	NA	0	89	0	92
P-0060527-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55192772	55222144	Intron of EGFR(+):17Kb before exon 2	Intron of EGFR(+):299bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-17207_c.889+299del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	29372	NA	0	5	0	5
P-0060587-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865372	42874839	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4723:TMPRSS2_c.18+4915:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009467	NA	1	60	10	60
P-0061282-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89347757	89476190	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):141Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.5193:ANKRD11_chr16:g.89476190del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	128433	NA	0	11	10	14
P-0061282-T01-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	109558193	111887570	5-UTR of EDAR(-):45Kb before coding start	Intron of BCL2L11(+):6Kb after exon 2	GRCh37	DELETION	BCL2L11 (NM_138621) rearrangement: c.394+5854:BCL2L11_chr2:g.109558193del	PRECISE		MANUAL_OK	3to5	-	2329377	NA	0	36	10	66
P-0061282-T01-IM7	SOMATIC	NOTCH1	NOTCH1	20	9	24354532	139399996	IGR: 95Kb before SYNDIG1(+)	Exon 25 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;20)(q34.3;p11.21)(chr9:g.139399996::chr20:g.24354532)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	18	10	18
P-0061282-T01-IM7	SOMATIC	EPHB1	EPHB1	3	3	134898805	134918766	Exon 10 of EPHB1(+)	Intron of EPHB1(+):2Kb before exon 12	GRCh37	DELETION	EPHB1 (NM_004441) rearrangement: c.1863_c.2131-1550del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19961	NA	0	30	10	30
P-0061625-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864927	42871937	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1821:TMPRSS2_c.18+5360:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3007010	NA	0	54	10	56
P-0061756-T02-IM7	SOMATIC	BAP1	BAP1	3	3	52409857	52442364	Intron of DNAH1(+):113bp before exon 46	Intron of BAP1(-):125bp after exon 4	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.255+126:BAP1_chr3:g.52409857del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	32507	NA	0	9	0	10
P-0061836-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63708233	63810577	Intron of ARID5B(+):8Kb after exon 3	Intron of ARID5B(+):69bp before exon 5	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.502+8066_c.734-70del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	102344	NA	0	10	10	11
P-0061836-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63846653	63851249	Intron of ARID5B(+):994bp after exon 9	Exon 10 of ARID5B(+)	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.1398+994_c.2027dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4596	NA	0	13	10	15
P-0061969-T03-IM7	SOMATIC	SMARCA4	SMARCA4	19	11	11118901	25191479	Intron of SMARCA4(+):202bp after exon 14	IGR: 673Kb before LUZP2(+)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(11;19)(p14.3;p13.2)(chr11:g.25191479::chr19:g.11118901)	PRECISE		MANUAL_OK	3to5	-	0	60	0	16	10	16
P-0061991-T02-IM7	SOMATIC	SFTPB	CRYZL1	21	2	34977252	85885488	Intron of CRYZL1(-):1Kb before exon 7	3-UTR of SFTPB(-):3Kb after coding stop	GRCh37	TRANSLOCATION	SFTPB (NM_198843) - CRYZL1 (NM_145858) rearrangement: t(2;21)(p11.2;q22.11)(chr2:g.85885488::chr21:g.34977252)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	76	10	77
P-0062007-T01-IM7	SOMATIC	ATM	ATM	11	11	108128342	108131262	Intron of ATM(+):9bp after exon 15	Intron of ATM(+):1Kb after exon 16	GRCh37	DUPLICATION	ATM (NM_000051) rearrangement: c.2376+9_c.2466+1460dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	2920	NA	0	15	10	15
P-0062007-T01-IM7	SOMATIC	NF1	NF1	17	13	29528130	105838461	Exon 10 of NF1(+)	IGR: 273Kb before DAOA-AS1(-)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(13;17)(q33.2;q11.2)(chr13:g.105838461::chr17:g.29528130)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	20	10	28
P-0062007-T01-IM7	SOMATIC	HMGXB3	CSF1R	5	5	149428725	149460294	Intron of HMGXB3(+):477bp after exon 18	Intron of CSF1R(-):35bp after exon 3	GRCh37	INVERSION	HMGXB3 (NM_014983) - CSF1R (NM_005211) rearrangement: c.3201+477:HMGXB3_c.307+36:CSF1Rinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {HMGXB3:CSF1R}	31569	NA	0	41	10	41
P-0062007-T01-IM7	SOMATIC	RB1	RB1	X	13	131510818	49038995	3-UTR of MBNL3(-):3Kb after coding stop	Intron of RB1(+):138bp before exon 22	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;X)(q14.2;q26.2)(chr13:g.49038995::chrX:g.131510818)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	30	10	30
P-0062050-T01-IM7	SOMATIC	AXIN2	AXIN2	17	17	63554136	63560233	Exon 2 of AXIN2(-)	Promoter of AXIN2(-):36Kb from tx start	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.603:AXIN2_chr17:g.63560233del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6097	NA	0	7	6	7
P-0062056-T01-IM7	SOMATIC	LMO1	LMO1	11	2	8248478	142794264	Intron of LMO1(-):43bp after exon 3	Intron of LRP1B(-):94Kb after exon 1	GRCh37	TRANSLOCATION	LMO1 (NM_002315) rearrangement: t(2;11)(q22.2;p15.4)(chr2:g.142794264::chr11:g.8248478)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	51	10	56
P-0062056-T01-IM7	SOMATIC	VEGFA	VEGFA	6	6	43622172	43745432	Intron of RSPH9(+):1Kb before exon 3	Intron of VEGFA(+):30bp after exon 3	GRCh37	INVERSION	VEGFA (NM_001171623) rearrangement: c.315+30:VEGFA_chr6:g.43622172inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	123260	NA	0	75	10	75
P-0062079-T01-IM7	SOMATIC	MKL2	ERCC4	16	16	14015901	14259885	Exon 2 of ERCC4(+)	Intron of MKL2(+):25Kb after exon 3	GRCh37	DUPLICATION	MKL2 (NM_014048) - ERCC4 (NM_005236) rearrangement: c.154+25268:MKL2_c.221:ERCC4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MKL2:ERCC4}	243984	NA	0	78	10	83
P-0062080-T01-IM7	SOMATIC	MSH2	MSH2	2	2	43841219	47662245	IGR: 23Kb before PLEKHH2(+)	Intron of MSH2(+):5Kb after exon 7	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.1276+5165:MSH2_chr2:g.43841219inv	PRECISE		MANUAL_OK	3to3	-	3821026	NA	0	51	10	51
P-0062080-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39869224	42875577	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4300:TMPRSS2_c.18+1063:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006353	NA	0	96	10	102
P-0062107-T03-IM7	SOMATIC	XRCC2	XRCC2	12	7	108488962	152346025	IGR: 35Kb before WSCD2(+)	Exon 3 of XRCC2(-)	GRCh37	TRANSLOCATION	XRCC2 (NM_005431) rearrangement: t(7;12)(q36.1;q23.3)(chr7:g.152346025::chr12:g.108488962)	PRECISE		MANUAL_OK	3to3	-	0	60	0	43	10	42
P-0062115-T02-IM7	SOMATIC	DNMT3B	DNMT3B	20	20	31387189	35781281	Intron of DNMT3B(+):55bp after exon 16	Intron of MROH8(-):2Kb after exon 8	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.1759+55:DNMT3B_chr20:g.35781281inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {DNMT3B:MROH8}	4394092	NA	0	42	10	44
P-0062125-T02-IM7	SOMATIC	ATR	ATR	3	3	142171944	146495341	Intron of ATR(-):25bp after exon 46	IGR: 192Kb before PLSCR5(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.7761+26:ATR_chr3:g.146495341del	PRECISE		MANUAL_OK	3to5	-	4323397	NA	0	24	10	24
P-0062128-T02-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21958332	22008170	IGR: 9Kb before CDKN2A-AS1(+)	Intron of CDKN2B(-):626bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+627:CDKN2B_chr9:g.21958332del	PRECISE		MANUAL_OK	3to5	-	49838	NA	0	24	10	23
P-0062167-T01-IM7	SOMATIC	GLI1	SCN8A	12	12	52132214	57864299	Intron of SCN8A(+):7Kb before exon 13	Exon 12 of GLI1(+)	GRCh37	DUPLICATION	GLI1 (NM_005269) - SCN8A (NM_014191) rearrangement: c.1776:GLI1_c.1999-7473:SCN8Adup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GLI1:SCN8A}	5732085	NA	0	5	0	5
P-0062167-T01-IM7	SOMATIC	STAT5A	THSD4	17	15	40459393	71980642	Intron of STAT5A(+):26bp before exon 15	Intron of THSD4(+):28Kb after exon 7	GRCh37	TRANSLOCATION	STAT5A (NM_003152) - THSD4 (NM_024817) rearrangement: t(15;17)(q23;q21.2)(chr15:g.71980642::chr17:g.40459393)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {STAT5A:THSD4}	0	NA	0	24	10	25
P-0062167-T01-IM7	SOMATIC	PAX8	PAX8	2	2	98702242	113987614	Promoter of VWA3B(+):1Kb from tx start	Intron of PAX8(-):3Kb before exon 10	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1088-2781:PAX8_chr2:g.98702242del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	15285372	NA	0	45	10	45
P-0062168-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37681565	37682601	Intron of CDK12(+):427bp after exon 12	Intron of CDK12(+):32bp after exon 13	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3307+427_c.3760+32inv	PRECISE		MANUAL_OK	5to5	-	1036	NA	0	68	10	80
P-0062193-T01-IM7	SOMATIC	KIT	KIT	10	4	102549644	55603430	Intron of PAX2(+):3Kb after exon 6	Exon 20 of KIT(+)	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(4;10)(q12;q24.31)(chr4:g.55603430::chr10:g.102549644)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	67	10	66
P-0062239-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	10	42842889	62393788	Intron of TMPRSS2(-):219bp before exon 11	Intron of ANK3(-):19Kb before exon 2	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(10;21)(q21.2;q22.3)(chr10:g.62393788::chr21:g.42842889)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	11	10	11
P-0062258-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114916366	114919610	Intron of TCF7L2(+):1Kb before exon 12	Intron of TCF7L2(+):767bp before exon 13	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.1270-1414_c.1319-768del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3244	NA	0	19	10	19
P-0062259-T01-IM7	SOMATIC	BRCA1	BRCA1	17	17	41244538	41264536	Exon 10 of BRCA1(-)	Intron of BRCA1(-):3Kb after exon 3	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.134+3207_c.3010del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19998	NA	0	39	10	39
P-0062260-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157145427	157192657	Intron of ARID1B(+):5Kb before exon 2	Intron of ARID1B(+):90bp before exon 3	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.1543-4934_c.1738-91del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	47230	NA	0	21	10	23
P-0062262-T01-IM7	SOMATIC	SETD2	CCDC12	3	3	46975657	47147576	Intron of CCDC12(-):7Kb after exon 3	Exon 6 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) - CCDC12 (NM_144716) rearrangement: c.4750:SETD2_c.203+6831:CCDC12del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SETD2:CCDC12}	171919	NA	0	5	0	5
P-0062264-T01-IM7	SOMATIC	BMPR1A	BMPR1A	10	6	88676914	124146206	Exon 9 of BMPR1A(+)	Intron of NKAIN2(+):21Kb after exon 1	GRCh37	TRANSLOCATION	BMPR1A (NM_004329) rearrangement: t(6;10)(q22.31;q23.2)(chr6:g.124146206::chr10:g.88676914)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	28	10	28
P-0062266-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	40757586	41127542	Intron of PTPRT(-):116bp before exon 20	Intron of PTPRT(-):26Kb before exon 8	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.1154-26340_c.2828-116del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	369956	NA	0	16	10	16
P-0062270-T01-IM7	SOMATIC	AR	XRCC6P5	X	X	66941616	99008629	Intron of AR(+):58bp before exon 6	3-UTR of XRCC6P5(-):186Kb after coding stop	GRCh37	INVERSION	AR (NM_000044) rearrangement: c.2319-59:AR_chrX:g.99008629inv	PRECISE		MANUAL_OK	5to5	-	32067013	NA	0	13	10	15
P-0062272-T01-IM7	SOMATIC	PIK3CB	PIK3CB	3	3	138461531	138468214	Exon 3 of PIK3CB(-)	Intron of PIK3CB(-):6Kb after exon 2	GRCh37	DELETION	PIK3CB (NM_006219) rearrangement: c.397+6382_c.490del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6683	NA	0	15	10	16
P-0062280-T01-IM7	SOMATIC	NCOA3	NCOA3	20	20	2262648	46252778	IGR: 14Kb before TGM3(+)	Exon 4 of NCOA3(+)	GRCh37	INVERSION	NCOA3 (NM_181659) rearrangement: c.207:NCOA3_chr20:g.2262648inv	PRECISE		MANUAL_OK	3to3	-	43990130	NA	0	20	10	21
P-0062318-T01-IM7	SOMATIC	EPHA3	EPHA3	3	3	89468497	164482743	Exon 11 of EPHA3(+)	3-UTR of LINC01324(-):67Kb after coding stop	GRCh37	DELETION	EPHA3 (NM_005233) rearrangement: c.2031:EPHA3_chr3:g.164482743del	PRECISE		MANUAL_OK	3to5	-	75014246	NA	0	23	10	25
P-0062326-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1732602	1808913	Intron of TACC3(+):11bp before exon 5	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2345:FGFR3_c.1386-12:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	76311	NA	0	4	8	4
P-0062332-T01-IM7	SOMATIC	MALT1	MALT1	18	18	56284282	56338989	5-UTR of ALPK2(-):135Kb before coding start	Exon 1 of MALT1(+)	GRCh37	INVERSION	MALT1 (NM_006785) rearrangement: c.114:MALT1_chr18:g.56284282inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MALT1:ALPK2}	54707	NA	0	16	10	16
P-0062340-T01-IM7	SOMATIC	ARID4B	FH	1	1	235371839	241665896	Intron of ARID4B(-):11Kb after exon 16	Intron of FH(-):26bp before exon 8	GRCh37	DUPLICATION	ARID4B (NM_016374) - FH (NM_000143) rearrangement: c.1841+5245:ARID4B_c.1109-26:FHdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ARID4B:FH}	6294057	NA	0	4	10	5
P-0062344-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	1	42875473	192773963	Intron of TMPRSS2(-):4Kb after exon 1	IGR: 4Kb before RGS2(+)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(1;21)(q31.2;q22.3)(chr1:g.192773963::chr21:g.42875473)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	15
P-0062348-T01-IM7	SOMATIC	NAB2	NAB2	20	12	13821777	57485909	IGR: 8Kb before SEL1L2(-)	Intron of NAB2(+):128bp after exon 2	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;20)(q13.3;p12.1)(chr12:g.57485909::chr20:g.13821777)	PRECISE		MANUAL_OK	3to5	-	0	60	0	62	10	62
P-0062370-T01-IM7	SOMATIC	KCNB2	SMO	8	7	73783827	128846006	Intron of KCNB2(+):64Kb before exon 3	Exon 5 of SMO(+)	GRCh37	TRANSLOCATION	KCNB2 (NM_004770) - SMO (NM_005631) rearrangement: t(7;8)(q32.1;q13.3)(chr7:g.128846006::chr8:g.73783827)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KCNB2:SMO}	0	60	0	14	10	14
P-0062416-T01-IM7	SOMATIC	RARA	GPATCH8	17	17	38512293	42500991	Exon 9 of RARA(+)	Intron of GPATCH8(-):725bp after exon 6	GRCh37	INVERSION	RARA (NM_000964) - GPATCH8 (NM_001002909) rearrangement: c.1204:RARA_c.492+726:GPATCH8inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RARA:GPATCH8}	3988698	60	0	71	10	70
P-0062417-T01-IM7	SOMATIC	IGF1	IGF1	12	12	102796343	102813286	Exon 4 of IGF1(-)	Exon 3 of IGF1(-)	GRCh37	DELETION	IGF1 (NM_001111285) rearrangement: c.402+1:IGF1_chr12:g.102796343del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16943	60	0	20	10	20
P-0062417-T01-IM7	SOMATIC	IGF1	IGF1	12	12	102813468	102869421	Exon 3 of IGF1(-)	Exon 2 of IGF1(-)	GRCh37	DELETION	IGF1 (NM_001111285) rearrangement: c.220_c.221del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	55953	60	0	12	10	12
P-0062429-T01-IM7	SOMATIC	AKAP8L	BRD4	19	19	15379894	15509245	Intron of BRD4(-):41bp before exon 3	Intron of AKAP8L(-):579bp before exon 10	GRCh37	DELETION	AKAP8L (NM_014371) - BRD4 (NM_058243) rearrangement: c.1158-579:AKAP8L_c.286-41:BRD4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {AKAP8L:BRD4}	129351	60	0	46	10	46
P-0062456-T01-IM7	SOMATIC	FH	FH	1	1	241680615	241682890	Exon 2 of FH(-)	Exon 1 of FH(-)	GRCh37	DELETION	FH (NM_000143) rearrangement: c.132+1_c.134del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2275	60	0	11	10	11
P-0056082-T03-IM7	SOMATIC	CDKN2C	CDKN2C	1	1	51398881	51441309	Intron of FAF1(-):27Kb after exon 1	Promoter of CDKN2C(+):6Kb from tx start	GRCh37	DELETION	CDKN2C (NM_078626) rearrangement: c.*1367:CDKN2C_chr1:g.51398881del	PRECISE		MANUAL_OK	3to5	-	42428	60	0	78	10	91
P-0060766-T02-IM7	SOMATIC	KDM5A	NINJ2	12	12	401803	703847	Intron of KDM5A(-):121bp after exon 27	Intron of NINJ2(-):29Kb before exon 2	GRCh37	DUPLICATION	KDM5A (NM_001042603) - NINJ2 (NM_016533) rearrangement: c.4866+122:KDM5A_c.172-28503:NINJ2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KDM5A:NINJ2}	302044	60	0	12	0	14
P-0060766-T02-IM7	SOMATIC	KDM5A	KDM5A	12	12	432771	1082712	Exon 15 of KDM5A(-)	5-UTR of RAD52(-):60Kb before coding start	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.2145:KDM5A_chr12:g.1082712inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	649941	56	0	100	0	121
P-0060766-T02-IM7	SOMATIC	PIK3CG	PIK3CG	7	6	106522750	155531232	Intron of PIK3CG(+):98bp after exon 7	Intron of TIAM2(+):1Kb before exon 14	GRCh37	TRANSLOCATION	PIK3CG (NM_002649) rearrangement: t(6;7)(q25.3;q22.3)(chr6:g.155531232::chr7:g.106522750)	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	11	0	11
P-0062107-T02-IM7	SOMATIC	XRCC2	XRCC2	12	7	108487430	152346560	IGR: 36Kb before WSCD2(+)	Intron of XRCC2(-):112bp before exon 3	GRCh37	TRANSLOCATION	XRCC2 (NM_005431) rearrangement: t(7;12)(q36.1;q23.3)(chr7:g.152346560::chr12:g.108487430)	PRECISE		MANUAL_OK	5to3	-	0	60	0	16	10	15
P-0062382-T01-IM7	SOMATIC	MLH1	MLH1	3	3	37090469	157566301	Exon 18 of MLH1(+)	IGR: 247Kb before SHOX2(-)	GRCh37	INVERSION	MLH1 (NM_000249) rearrangement: c.2064:MLH1_chr3:g.157566301inv	PRECISE		MANUAL_OK	3to3	-	120475832	60	0	4	6	4
P-0062386-T01-IM7	SOMATIC	TP53	TP53	17	17	7559104	7578063	Exon 7 of ATP1B2(+)	Intron of TP53(-):113bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+114:TP53_chr17:g.7559104del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	18959	60	0	38	10	39
P-0062387-T01-IM7	SOMATIC	SPOP	SPOP	17	6	47700124	27123893	Exon 2 of SPOP(-)	IGR: 8Kb before MIR3143(+)	GRCh37	TRANSLOCATION	SPOP (NM_001007228) rearrangement: t(6;17)(p22.1;q21.33)(chr6:g.27123893::chr17:g.47700124)	PRECISE		MANUAL_OK	5to5	-	0	60	0	10	10	16
P-0027256-T03-IM7	SOMATIC	FOXA1	FOXA1	14	8	38061006	126543709	Exon 2 of FOXA1(-)	IGR: 99Kb before TRIB1(+)	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) rearrangement: t(8;14)(q24.13;q21.1)(chr8:g.126543709::chr14:g.38061006)	PRECISE		MANUAL_OK	3to5	-	0	60	0	31	10	31
P-0044647-T03-IM7	SOMATIC	FXR2	NF1	17	17	7495998	29540688	Intron of FXR2(-):13bp after exon 14	Intron of NF1(+):780bp before exon 13	GRCh37	INVERSION	FXR2 (NM_004860) - NF1 (NM_001042492) rearrangement: c.1729+14:FXR2_c.1393-781:NF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FXR2:NF1}	22044690	60	0	9	10	9
P-0051005-T03-IM7	SOMATIC	IFT140	FGFR1	16	8	1576664	38277127	Exon 20 of IFT140(-)	Exon 10 of FGFR1(-)	GRCh37	TRANSLOCATION	IFT140 (NM_014714) - FGFR1 (NM_001174067) fusion: t(8;16)(p11.23;p13.3)(chr8:g.38277127::chr16:g.1576664)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {IFT140:FGFR1}	0	60	0	7	10	7
P-0062408-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39880351	42869183	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):862bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+863:TMPRSS2_c.40-62807:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2988832	60	0	8	10	8
P-0062464-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39822689	42868359	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1687:TMPRSS2_c.19-5145:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3045670	60	0	90	10	93
P-0062478-T01-IM7	SOMATIC	PALB2	PALB2	16	16	23643276	23649112	Intron of PALB2(-):1Kb before exon 5	Intron of PALB2(-):58bp after exon 3	GRCh37	DELETION	PALB2 (NM_024675) rearrangement: c.211+59_c.1685-1486del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	5836	60	0	31	10	32
P-0062483-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	116960103	120510698	3-UTR of ATP1A1-AS1(-):1Kb after coding stop	Intron of NOTCH2(-):1bp after exon 7	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.1264+2:NOTCH2_chr1:g.116960103del	PRECISE		MANUAL_OK	3to5	-	3550595	60	0	103	10	106
P-0062486-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55156807	55222318	Intron of EGFR(+):53Kb before exon 2	Intron of EGFR(+):473bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-53172_c.889+473del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	65511	60	0	19	0	241
P-0062491-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39853135	42875520	Intron of ERG(-):17Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+17152:ERG_c.55+4357:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	3022385	60	0	4	5	4
P-0062498-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57488410	57503826	Exon 7 of NAB2(+)	3-UTR of STAT6(-):1Kb after coding stop	GRCh37	INVERSION	NAB2 (NM_005967) -STAT6 (NM_003153) rearrangement: c.1484:NAB2_c.-22+1086:STAT6inv	PRECISE		MANUAL_OK	3to3	-	15416	60	0	71	10	71
P-0062499-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37641612	37668007	Intron of CDK12(+):5Kb before exon 3	Intron of CDK12(+):124bp after exon 8	GRCh37	DUPLICATION	CDK12 (NM_016507) rearrangement: c.1932-5198_c.2768+124dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	26395	60	0	6	0	6
P-0062499-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47004992	47011571	Intron of RBM10(+):77bp after exon 1	Intron of RBM10(+):5Kb after exon 2	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.70+77_c.212+4674del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	6579	60	0	87	10	99
P-0062500-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	78771739	78853985	Intron of RPTOR(+):6Kb after exon 7	Intron of RPTOR(+):229bp before exon 14	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.890+6430_c.1510-230del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : out of frame	82246	60	0	19	10	19
P-0062500-T01-IM7	SOMATIC	PNRC1	PNRC1	6	6	83718169	89791090	Intron of UBE3D(-):11Kb after exon 8	Exon 1 of PNRC1(+)	GRCh37	DELETION	PNRC1 (NM_006813) rearrangement: c.477:PNRC1_chr6:g.83718169del	PRECISE		MANUAL_OK	3to5	-	6072921	60	0	79	10	80
P-0062503-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123159719	123220566	Exon 4 of STAG2(+)	Exon 30 of STAG2(+)	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.74_c.3223dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	60847	60	0	42	10	43
P-0062568-T01-IM7	SOMATIC	SSH3	RPS6KB2	11	11	67077945	67201356	Intron of SSH3(+):135bp after exon 13	Intron of RPS6KB2(+):109bp before exon 11	GRCh37	DELETION	SSH3 (NM_017857) - RPS6KB2 (NM_003952) rearrangement: c.1683+135:SSH3_c.907-110:RPS6KB2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SSH3:RPS6KB2}	123411	60	0	23	10	23
P-0062572-T01-IM7	SOMATIC	AXIN2	AXIN2	17	8	63553755	134877399	Intron of AXIN2(-):168bp after exon 2	IGR: 21Kb before LOC101927822(+)	GRCh37	TRANSLOCATION	AXIN2 (NM_004655) rearrangement: t(8;17)(q24.22;q24.1)(chr8:g.134877399::chr17:g.63553755)	PRECISE		MANUAL_OK	5to3	-	0	60	0	19	10	19
P-0062584-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2211002	2489939	Intron of DOT1L(+):95bp before exon 15	IGR: 14Kb before GADD45B(+)	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.1352-96:DOT1L_chr19:g.2489939inv	PRECISE		MANUAL_OK	3to3	-	278937	60	0	11	10	10
P-0001876-T05-IM7	SOMATIC	TMPRSS2	ERG	21	21	39810725	42870614	Intron of ERG(-):7Kb after exon 2	Intron of TMPRSS2(-):498bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-498:TMPRSS2_c.236+6602:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3059889	60	0	53	10	55
P-0012873-T03-IM7	SOMATIC	EML4	ALK	2	2	29446439	42524887	Intron of ALK(-):45bp before exon 20	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2231:EML4_c.3173-45:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078448	60	0	177	10	177
P-0059025-T05-IM7	SOMATIC	CLIP2	MET	7	7	73796474	116411663	Intron of CLIP2(+):1Kb after exon 10	Exon 13 of MET(+)	GRCh37	DELETION	CLIP2 (NM_003388) - MET (NM_000245) fusion: c.2479+1281:CLIP2_c.2842:METdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CLIP2:MET}	42615189	60	0	10	10	13
P-0061731-T01-IM7	SOMATIC	CATSPERG	MLLT1	19	19	6270649	38852333	Exon 2 of MLLT1(-)	Exon 17 of CATSPERG(+)	GRCh37	INVERSION	CATSPERG (NM_021185) - MLLT1 (NM_005934) rearrangement: c.1926:CATSPERG_c.134:MLLT1inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CATSPERG:MLLT1}	32581684	60	0	25	0	25
P-0061731-T01-IM7	SOMATIC	STK19	STK19	19	6	6088880	31947212	5-UTR of RFX2(-):94Kb before coding start	Exon 5 of STK19(+)	GRCh37	TRANSLOCATION	STK19 (NM_004197) rearrangement: t(6;19)(p21.33;p13.3)(chr6:g.31947212::chr19:g.6088880)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RFX2:STK19}	0	60	0	16	0	19
P-0062512-T01-IM7	SOMATIC	UBASH3A	ERG	21	21	39775548	43835766	Exon 4 of ERG(-)	Intron of UBASH3A(+):784bp before exon 6	GRCh37	INVERSION	UBASH3A (NM_001001895) - ERG (NM_182918) rearrangement: c.554-785:UBASH3A_c.472:ERGinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {UBASH3A:ERG}	4060218	60	0	21	10	21
P-0062513-T01-IM7	SOMATIC	FOXA1	FOXA1	14	14	38050759	38061815	IGR: 8Kb before FOXA1(-)	Exon 2 of FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.174:FOXA1_chr14:g.38050759del	PRECISE		MANUAL_OK	3to5	-	11056	60	0	18	10	18
P-0062518-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39870672	42872973	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2857:TMPRSS2_c.40-53128:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3002301	60	0	65	10	70
P-0062519-T01-IM7	SOMATIC	EPHA3	EPHA3	3	3	89521597	146410594	Intron of EPHA3(+):16bp before exon 16	IGR: 107Kb before PLSCR5(-)	GRCh37	INVERSION	EPHA3 (NM_005233) rearrangement: c.2691-17:EPHA3_chr3:g.146410594inv	PRECISE		MANUAL_OK	5to5	-	56888997	60	0	5	10	7
P-0062534-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39914614	42872238	Intron of ERG(-):33Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2122:TMPRSS2_c.39+32972:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2957624	60	0	24	10	26
P-0062535-T01-IM7	SOMATIC	ATM	MTUS2	13	11	29908237	108186976	Intron of MTUS2(+):9Kb after exon 5	Intron of ATM(+):136bp after exon 42	GRCh37	TRANSLOCATION	ATM (NM_000051) - MTUS2 (NM_001033602) rearrangement: t(11;13)(q22.3;q12.3)(chr11:g.108186976::chr13:g.29908237)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ATM:MTUS2}	0	38	0	37	10	38
P-0062562-T01-IM7	SOMATIC	EWSR1	EWSR1	22	6	29687140	107978290	Intron of EWSR1(+):413bp before exon 10	3-UTR of SOBP(+):166Kb after coding stop	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(6;22)(q21;q12.2)(chr6:g.107978290::chr22:g.29687140)	PRECISE		MANUAL_OK	5to5	-	0	60	0	28	10	32
P-0062565-T01-IM7	SOMATIC	VTCN1	VTCN1	1	1	117692208	117699658	Intron of VTCN1(-):2Kb before exon 5	Intron of VTCN1(-):115bp before exon 3	GRCh37	INVERSION	VTCN1 (NM_024626) rearrangement: c.98-115_c.725-1804inv	PRECISE		MANUAL_OK	3to3	-	7450	60	0	10	10	10
P-0062565-T01-IM7	SOMATIC	GPATCH8	MAP3K14	17	17	42496504	43344186	Intron of GPATCH8(-):5Kb after exon 6	Intron of MAP3K14(-):138bp before exon 14	GRCh37	DUPLICATION	GPATCH8 (NM_001002909) - MAP3K14 (NM_003954) rearrangement: c.492+5213:GPATCH8_c.2433-138:MAP3K14dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {GPATCH8:MAP3K14}	847682	60	0	6	10	7
P-0062640-T01-IM7	SOMATIC	RB1	RB1	13	13	48877670	48878212	Promoter of RB1(+):212bp from tx start	Intron of RB1(+):27bp after exon 1	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.137+27:RB1_chr13:g.48877670del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	542	60	0	3	10	3
P-0062686-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55099135	55221741	Intron of EGFR(+):12Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+12077_c.785del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	122606	60	0	65	10	66
P-0000840-T03-IM6	SOMATIC	CD74	ROS1	6	5	117646938	149783509	Intron of ROS1(-):448bp after exon 33	Intron of CD74(-):634bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783509::chr6:g.117646938)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	6	10	6
P-0005786-T01-IM5	SOMATIC	EML4	ALK	2	2	29448239	42544381	Intron of ALK(-): 88bp after exon 19	Intron of EML4(+): 186bp before exon 18	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-18 with ALK exons 20-29) : c.2057-186:EML4_c.3172+88:ALKinv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (EML4-ALK)	13096142	NA	0	17	24	17
P-0006506-T02-IM6	SOMATIC	EWSR1	WT1	22	11	29684051	32416495	Intron of EWSR1(+):543bp before exon 9	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) rearrangement: t(11;22)(p13;q12.2)(chr11:g.32416495::chr22:g.29684051)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	13	10	11
P-0006506-T02-IM6	SOMATIC	EWSR1	EWSR1	22	8	29684150	23374304	Intron of EWSR1(+):444bp before exon 9	IGR: 12Kb before SLC25A37(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(8;22)(p21.2;q12.2)(chr8:g.23374304::chr22:g.29684150)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	55	10	64
P-0014129-T03-IM6	SOMATIC	KMT2C	KMT2C	7	7	151874232	152299391	Exon 38 of KMT2C(-)	IGR: 44Kb before XRCC2(-)	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.8306_chr7:g.152299391dup	PRECISE		MANUAL_OK	5to3	-	425159	NA	0	26	10	31
P-0015825-T01-IM6	SOMATIC	TNFRSF14	TNFRSF14	1	1	2494624	173990228	Exon 8 of TNFRSF14(+)	IGR: 90Kb before RC3H1(-)	GRCh37	INVERSION	TNFRSF14 (NM_003820) rearrangement: c.764_chr1:g.173990228inv	PRECISE		MANUAL_OK	3to3	-	171495604	NA	0	7	10	8
P-0017158-T05-IM6	SOMATIC	ZCCHC7	TEK	9	9	27192537	37281325	Exon 11 of TEK(+)	Intron of ZCCHC7(+):21Kb before exon 3	GRCh37	DUPLICATION	ZCCHC7 (NM_032226) - TEK (NM_000459) Fusion(ZCCHC7 exon1-2 fused with TEK exons 11-23) : c.611-20860:ZCCHC7_c.1540:TEK	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ZCCHC7:TEK}	10088788	NA	0	7	0	7
P-0021445-T01-IM6	SOMATIC	RB1	RB1	13	13	48878202	48881959	Intron of RB1(+):17bp after exon 1	Intron of RB1(+):417bp after exon 2	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.137+17_c.264+417del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3757	NA	0	4	10	5
P-0021722-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25972630	26068304	Exon 11 of ASXL2(-)	Intron of ASXL2(-):45bp after exon 2	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.140+46_c.1795del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	95674	NA	0	9	10	13
P-0022811-T01-IM6	SOMATIC	KMT2C	KMT2C	7	1	151902162	1500228	Intron of KMT2C(-):28bp after exon 25	Exon 2 of SSU72(-)	GRCh37	TRANSLOCATION	KMT2C (NM_170606) rearrangement: t(1;7)(p36.33;q36.1)(chr1:g.1500228:chr7:g.151902162)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	13	10	25
P-0023439-T01-IM6	SOMATIC	ETV6	ETV6	12	12	10974606	12022951	IGR: 3Kb before TAS2R10(-)	Intron of ETV6(+):48bp after exon 5	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: chr12:g.10974606_c.1009+48inv	PRECISE		MANUAL_OK	5to5	-	1048345	NA	0	101	10	127
P-0023788-T01-IM6	SOMATIC	CAMK4	APC	5	5	110709642	112177852	Intron of CAMK4(+):905bp before exon 3	Exon 16 of APC(+)	GRCh37	DELETION	CAMK4 (NM_001744) - APC (NM_000038) Rearrangement : c.241-906:CAMK4_c.6561:APCdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CAMK4:APC}	1468210	NA	0	5	7	5
P-0024559-T01-IM6	SOMATIC	RET	RET	10	10	32186894	43610782	Intron of ARHGAP12(-):10Kb after exon 3	Intron of RET(+):598bp after exon 11	GRCh37	DELETION	RET (NM_020975) rearrangement: chr10:g.32186894_c.2136+598del	PRECISE		MANUAL_OK	3to5	-	11423888	NA	0	32	10	32
P-0030007-T02-IM6	SOMATIC	BABAM1	ATP6V1E1	22	19	18110352	17382506	Intron of ATP6V1E1(-):1Kb after exon 1	Intron of BABAM1(+):42bp after exon 3	GRCh37	TRANSLOCATION	BABAM1 (NM_001033549) - ATP6V1E1 (NM_001696) rearrangement: t(19,22)(p13.11;q11.21)(chr19:g.17382506::chr22:g.18110352)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {BABAM1:ATP6V1E1}	0	NA	0	54	10	59
P-0031470-T01-IM6	SOMATIC	EML4	ALK	2	2	29447603	42499653	Intron of ALK(-):723bp after exon 19	Intron of EML4(+):8Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exons 1-5 fused to ALK exons 20-29): c.667+7782:EML4_c.3172+724:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052050	NA	0	12	10	12
P-0032098-T01-IM6	SOMATIC	FLT4	FLT4	5	5	180046293	180053358	Exon 19 of FLT4(-)	Intron of FLT4(-):93bp before exon 9	GRCh37	DUPLICATION	FLT4 (NM_182925) rearrangement: c.1104-93_c.2721dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7065	NA	0	6	0	6
P-0032284-T01-IM6	SOMATIC	NOTCH2	NOTCH2	17	1	68563463	120510237	IGR: 398Kb before KCNJ2(+)	Exon 8 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;17)(p12;q24.3)(chr1:g.120510237::chr17:g.68563463)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	7	10	7
P-0032298-T01-IM6	SOMATIC	DLG1	NOTCH2	3	1	197019484	120466841	Intron of DLG1(-):4Kb after exon 3	Intron of NOTCH2(-):234bp before exon 26	GRCh37	TRANSLOCATION	DLG1 (NM_004087) - NOTCH2 (NM_024408) rearrangement: t(1;3)(p12;q29)(chr1:g.120466841::chr3:g.197019484)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DLG1:NOTCH2}	0	NA	0	20	10	16
P-0032351-T01-IM6	SOMATIC	BRD4	EPHX3	19	19	15340392	15354207	Intron of EPHX3(-):1Kb after exon 4	Exon 14 of BRD4(-)	GRCh37	DELETION	BRD4(NM_058243) - EPHX3(NM_024794) Fusion:  c.2673:BRD4_c.616+1381:EPHX3del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BRD4:EPHX3}	13815	NA	0	5	0	5
P-0032351-T01-IM6	SOMATIC	BRD4	PLEKHA2	19	8	15354210	38789930	Exon 14 of BRD4(-)	Intron of PLEKHA2(+):4Kb before exon 3	GRCh37	TRANSLOCATION	BRD4(NM_058243) - PLEKHA2(NM_021623) Fusion: t(8;19)(p11.23;p13.13)(chr8:g.38789930::chr19:g.15354210)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRD4:PLEKHA2}	0	NA	0	117	10	172
P-0034132-T01-IM6	SOMATIC	SMAD4	SMAD4	18	18	48567175	48604887	5-UTR of SMAD4(+):6Kb before coding start	3-UTR of SMAD4(+):31Kb after coding stop	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.-127-6115_c.*50inv	PRECISE		MANUAL_OK	3to3	-	37712	NA	0	6	10	6
P-0037099-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31016203	31520829	Exon 5 of ASXL1(+)	IGR: 51Kb before SUN5(-)	GRCh37	DUPLICATION	ASXL1 (NM_015338) rearrangement: c.449:ASXL1_chr20:g.31520829dup	PRECISE		MANUAL_OK	5to3	-	504626	NA	0	4	5	4
P-0037107-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63526308	64027168	Intron of AXIN2(-):88bp before exon 11	Intron of CEP112(-):1Kb before exon 11	GRCh37	INVERSION	AXIN2 (NM_004655) rearrangement: c.2406-88:AXIN2_chr17:g.64027168inv	PRECISE		MANUAL_OK	3to3	-	500860	NA	0	36	10	36
P-0037143-T01-IM6	SOMATIC	PAX8	PAX8	2	2	113983508	118870847	Intron of PAX8(-):1Kb after exon 10	IGR: 25Kb before INSIG2(+)	GRCh37	INVERSION	PAX8 (NM_003466) Rearrangement : c.1189+1224:PAX8_chr2:g.118870847inv	PRECISE		MANUAL_OK	3to3	-	4887339	NA	0	106	10	106
P-0037172-T01-IM6	SOMATIC	RTEL1	RTEL1	20	10	62321521	114961946	Exon 25 of RTEL1(+)	IGR: 252Kb before TCF7L2(+)	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(10;20)(q24.3;q13.33)(chr10:g.114961946::chr20:g.62321521)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	8	10	8
P-0037252-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15281410	15407776	Intron of NOTCH3(-):46bp before exon 27	IGR: 50Kb before BRD4(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4892-46:NOTCH3_chr19:g.15407776del	PRECISE		MANUAL_OK	3to5	-	126366	NA	0	35	10	37
P-0037252-T01-IM6	SOMATIC	EIF4A2	EIF4A2	3	3	186499812	186505793	Promoter of EIF4A2(+):2Kb from tx start	Intron of EIF4A2(+):122bp after exon 10	GRCh37	INVERSION	EIF4A2 (NM_001967) rearrangement: c.1079+122:EIF4A2_chr3:g.186499812inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	5981	NA	0	13	10	12
P-0037284-T01-IM6	SOMATIC	DCTN1	ALK	2	2	29447891	74590929	Intron of ALK(-):435bp after exon 19	Intron of DCTN1(-):375bp before exon 24	GRCh37	DELETION	DCTN1 (NM_004082) - ALK (NM_004304) fusion (DCTN1 exons 1-26 fused to ALK exons 20-29: c.3197-174:DCTN1_c.3172+436:ALKdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DCTN1:ALK}	45143038	NA	0	5	10	5
P-0037448-T01-IM6	SOMATIC	ATP5G2	BRCA2	13	12	32918654	54062814	Intron of BRCA2(+):40bp before exon 12	Intron of ATP5G2(-):117bp after exon 4	GRCh37	TRANSLOCATION	ATP5G2 (NM_005176) - BRCA2 (NM_000059) rearrangement: t(12;13)(q13.13;q13.1)(chr12:g.54062814::chr13:g.32918654)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ATP5G2:BRCA2}	0	NA	0	22	10	22
P-0037491-T01-IM6	SOMATIC	EML4	ALK	2	2	29446786	42527261	Intron of ALK(-):392bp before exon 20	Intron of EML4(+):1Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) Fusion (EML4 exon12 fused with ALK exon20): c.1490-1120:EML4_c.3173-392:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080475	NA	0	122	10	122
P-0037514-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268767	55269625	Intron of EGFR(+):113bp before exon 25	Intron of EGFR(+):150bp after exon 26	GRCh37	DELETION	EGFR (NM_005228) Rearrangement : c.2947-114_c.3162+150del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	858	NA	3	3	7	0
P-0037514-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38277114	60630631	Exon 10 of FGFR1(-)	IGR: 471Kb before CA8(-)	GRCh37	DELETION	FGFR1 (NM_001174067) Rearrangement : c.1314:FGFR1_chr8:g.6063063del	PRECISE		MANUAL_OK	3to5	-	22353517	NA	0	11	10	11
P-0037601-T01-IM6	SOMATIC	PIK3CB	PIK3CB	3	3	137751528	138474814	3-UTR of CLDN18(+):22Kb after coding stop	Exon 2 of PIK3CB(-)	GRCh37	INVERSION	PIK3CB (NM_006219) rearrangement: c.179:PIK3CB_chr3:g.137751528inv	PRECISE		MANUAL_OK	3to3	-	723286	NA	0	23	10	23
P-0037642-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	143647141	145741720	IGR: 45Kb before ARC(-)	Exon 5 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) rearrangement: c.783:RECQL4_chr8:g.143647141del	PRECISE		MANUAL_OK	3to5	-	2094579	NA	0	11	10	11
P-0037643-T01-IM6	SOMATIC	MET	MET	7	7	116411750	116414429	Intron of MET(+):42bp after exon 13	Intron of MET(+):505bp before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2887+42_c.3029-506del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2679	NA	0	83	10	90
P-0037692-T01-IM6	SOMATIC	ELF3	ELF3	1	1	201979985	201982188	5-UTR of ELF3(+):279bp before coding start	Intron of ELF3(+):24bp after exon 6	GRCh37	INVERSION	ELF3 (NM_004433) Rearrangement : c.-9+151_c.688+24inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2203	NA	0	17	10	17
P-0037693-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117725507	117731222	Exon 5 of ROS1(-)	Intron of ROS1(-):417bp before exon 4	GRCh37	INVERSION	ROS1 (NM_002944) Rearrangement : c.229-417_c.374inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5715	NA	0	25	10	26
P-0037910-T01-IM6	SOMATIC	HIST1H1C	HIST1H1C	13	6	97043138	26056197	Intron of HS6ST3(+):299Kb after exon 1	Exon 1 of HIST1H1C(-)	GRCh37	TRANSLOCATION	HIST1H1C (NM_005319) rearrangement: t(6;13)(q24.33;q32.1)(chr6:g.26056197::chr13:g.97043138)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	5	10	5
P-0037925-T01-IM6	SOMATIC	EML4	ALK	2	2	29446522	42496505	Intron of ALK(-):128bp before exon 20	Intron of EML4(+):5Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4634:EML4_c.3173-128:ALKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13049983	NA	0	14	0	14
P-0037925-T01-IM6	SOMATIC	OXSR1	MYD88	3	3	38182163	38214127	Intron of MYD88(+):84bp before exon 4	Intron of OXSR1(+):7Kb after exon 1	GRCh37	DUPLICATION	OXSR1 (NM_005109) - MYD88 (NM_002468) rearrangement: c.70+6690:OXSR1_c.684-85:MYD88dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {OXSR1:MYD88}	31964	NA	0	53	10	55
P-0037973-T01-IM6	SOMATIC	TERT	TERT	5	5	1295168	10249820	Promoter of TERT(-):42Kb from tx start	Intron of FAM173B(-):149bp after exon 1	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-64:TERT_chr5:g.10249820del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FAM173B:TERT}	8954652	NA	0	8	10	8
P-0038018-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151854877	151952175	Intron of KMT2C(-):1Kb after exon 44	Intron of KMT2C(-):2Kb before exon 10	GRCh37	INVERSION	KMT2C (NM_170606) Rearrangement: c.1300-2375_c.11670+1071inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	97298	NA	0	4	10	6
P-0039219-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11110660	11113812	Intron of SMARCA4(+):3Kb before exon 12	Exon 12 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1813-3045_c.1920del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3152	NA	0	21	10	23
P-0039219-T01-IM6	SOMATIC	CD74	ROS1	6	5	117646339	149783535	Intron of ROS1(-):761bp before exon 34	Intron of CD74(-):660bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783535::chr6:g.117646339)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	156	10	159
P-0039257-T01-IM6	SOMATIC	KIF5B	RET	10	10	32316224	43610060	Intron of KIF5B(-):1Kb after exon 15	Exon 11 of RET(+)	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1132:KIF5B_c.2012:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:RET}	11293836	NA	0	68	10	73
P-0039257-T01-IM6	SOMATIC	B2M	B2M	15	15	45002849	45003765	Promoter of B2M(+):835bp from tx start	Exon 1 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.21:B2M_chr15:g.45002849del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	916	NA	0	32	0	34
P-0039738-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10599783	10601710	Intron of KEAP1(-):84bp after exon 5	Intron of KEAP1(-):542bp after exon 3	GRCh37	DUPLICATION	KEAP1 (NM_203500) rearrangement: c.1325+543_c.1708+85dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	1927	NA	0	54	10	58
P-0039853-T01-IM6	SOMATIC	LZTR1	CRKL	22	22	21288130	21341623	Exon 2 of CRKL(+)	Intron of LZTR1(+):169bp before exon 4	GRCh37	DUPLICATION	LZTR1 (NM_006767) - CRKL (NM_005207) rearrangement: c.321-170:LZTR1_c.375:CRKLdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LZTR1:CRKL}	53493	NA	0	5	6	8
P-0039853-T01-IM6	SOMATIC	STK19	STK19	6	6	31948359	31981147	Intron of STK19(+):34bp after exon 6	Promoter of STK19(+):370bp from tx start	GRCh37	DELETION	STK19 (NM_004197) rearrangement: c.901+34:STK19_chr6:g.31981147del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	32788	NA	85	64	10	168
P-0039943-T01-IM6	SOMATIC	TAP1	TAP1	6	6	7070398	32820260	IGR: 37Kb before RREB1(+)	Exon 2 of TAP1(-)	GRCh37	INVERSION	TAP1 (NM_000593) rearrangement: c.798:TAP1_chr6:g.7070398inv	PRECISE		MANUAL_OK	5to5	-	25749862	NA	0	8	10	11
P-0039998-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970935	21973402	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):2Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.423_c.194-2195del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2467	NA	0	51	10	52
P-0040095-T01-IM6	SOMATIC	C20orf194	CDKN2A	20	9	3271180	21968295	Intron of C20orf194(-):317bp before exon 26	Intron of CDKN2A(-):54bp before exon 3	GRCh37	TRANSLOCATION	C20orf194 (NM_001009984) - CDKN2A (NM_000077) rearrangement: t(9;20)(p21.3;p13)(chr9:g.21968295::chr20:g.3271180)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {C20orf194:CDKN2A}	0	NA	0	53	10	53
P-0040389-T01-IM6	SOMATIC	MALT1	MALT1	18	6	56363675	107026360	Exon 3 of MALT1(+)	Intron of RTN4IP1(-):5Kb after exon 8	GRCh37	TRANSLOCATION	MALT1 (NM_006785) rearrangement: t(6;18)(q21;q21.32)(chr6:g.107026360::chr18:g.56363675)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	NA	0	108	10	126
P-0040389-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15280927	16107674	Exon 28 of NOTCH3(-)	IGR: 19Kb before LINC00661(+)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.5169:NOTCH3_chr19:g.16107674del	PRECISE		MANUAL_OK	3to5	-	826747	NA	0	18	10	19
P-0040482-T01-IM6	SOMATIC	NAB2	NAB2	12	12	57485948	59680211	Intron of NAB2(+):167bp after exon 2	IGR: 310Kb before SLC16A7(+)	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.957+167:NAB2_chr12:g.59680211inv	PRECISE		MANUAL_OK	3to3	-	2194263	NA	0	51	10	52
P-0040482-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55189102	55222273	Intron of EGFR(+):21Kb before exon 2	Intron of EGFR(+):428bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-20877_c.889+428del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	33171	NA	0	123	10	127
P-0040544-T01-IM6	SOMATIC	NFE2L2	NFE2L2	13	2	63941965	178096192	IGR: 185Kb before LINC00376(-)	Exon 5 of NFE2L2(-)	GRCh37	TRANSLOCATION	NFE2L2 (NM_006164) rearrangement: t(2;13)(q31.2;q21.31)(chr2:g.178096192::chr13:g.63941965)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	7	10	7
P-0040553-T01-IM6	SOMATIC	EML4	ALK	2	2	29447055	42522686	Intron of ALK(-):661bp before exon 20	Intron of EML4(+):30bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+30:EML4_c.3173-661:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075631	NA	0	10	10	9
P-0040569-T01-IM6	SOMATIC	TSC2	TSC2	16	16	2114405	2118331	Exon 15 of TSC2(+)	Intron of TSC2(+):2Kb before exon 17	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1576_c.1717-2126del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3926	NA	0	53	10	54
P-0040577-T01-IM6	SOMATIC	CD74	ROS1	6	5	117650159	149783441	Intron of ROS1(-):332bp after exon 32	Intron of CD74(-):566bp before exon 7	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion (CD74 exons 1-6 fused with ROS1 exons 32-43) : t(5;6)(q32;q22.1)(chr5:g.149783441::chr6:g.117650159)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	54	10	53
P-0040655-T01-IM6	SOMATIC	PIK3CG	PIK3CG	7	7	106545779	147785722	Exon 11 of PIK3CG(+)	Intron of CNTNAP2(+):29Kb before exon 16	GRCh37	INVERSION	PIK3CG (NM_002649) rearrangement: c.3256:PIK3CG_chr7:g.147785722inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	41239943	NA	0	11	9	10
P-0040811-T01-IM6	SOMATIC	RB1	RB1	18	13	29737371	49027014	IGR: 33Kb before MEP1B(+)	Intron of RB1(+):114bp before exon 18	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;18)(q14.2;q12.1)(chr13:g.49027014::chr18:g.29737371)	PRECISE		MANUAL_OK	3to5	-	0	NA	1	19	10	18
P-0040821-T01-IM6	SOMATIC	ASXL1	ASXL1	20	20	31021639	31022245	Exon 11 of ASXL1(+)	Exon 12 of ASXL1(+)	GRCh37	DELETION	ASXL1 (NM_015338) rearrangement: c.1638_c.1730del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	606	NA	0	5	0	6
P-0040869-T01-IM6	SOMATIC	CD74	ROS1	6	5	117647263	149783792	Intron of ROS1(-):123bp after exon 33	Intron of CD74(-):450bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149783792::chr6:g.117647263)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {CD74:ROS1}	0	NA	0	67	10	64
P-0040894-T01-IM6	SOMATIC	TP53BP1	PPIP5K1	15	15	43784112	43833910	Intron of TP53BP1(-):87bp after exon 3	Intron of PPIP5K1(-):2Kb before exon 28	GRCh37	DUPLICATION	TP53BP1 (NM_001141980) - PPIP5K1 (NM_014659) rearrangement: c.286+88:TP53BP1_c.3311-2129:PPIP5K1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TP53BP1:PPIP5K1}	49798	NA	0	17	10	18
P-0040918-T01-IM6	SOMATIC	IKBKE	IKBKE	1	1	201570964	206666491	IGR: 46Kb before NAV1(+)	Intron of IKBKE(+):39bp after exon 19	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement: c.1932+39:IKBKE_chr1:g.201570964inv	PRECISE		MANUAL_OK	5to5	-	5095527	NA	0	11	10	12
P-0040918-T01-IM6	SOMATIC	PARP1	PARP1	1	1	222790646	226578202	Promoter of MIA3(+):797bp from tx start	Exon 4 of PARP1(-)	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: c.526:PARP1_chr1:g.222790646inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PARP1:MIA3}	3787556	NA	0	11	10	12
P-0040988-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156849891	156861509	Exon 16 of NTRK1(+)	Promoter of PEAR1(+):2Kb from tx start	GRCh37	DUPLICATION	NTRK1 (NM_002529) rearrangement: c.2147:NTRK1_chr1:g.156861509dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PEAR1:NTRK1}	11618	NA	0	7	10	7
P-0040988-T01-IM6	SOMATIC	RB1	RB1	13	13	48954155	48957807	Intron of RB1(+):33bp before exon 15	Intron of RB1(+):2Kb after exon 17	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1390-34_c.1695+2228dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	3652	NA	0	4	9	4
P-0040988-T01-IM6	SOMATIC	GPS2	GPS2	17	17	7217760	7251129	Intron of GPS2(-):38bp before exon 4	Intron of ACAP1(+):111bp before exon 15	GRCh37	DUPLICATION	GPS2 (NM_004489) rearrangement: c.205-38:GPS2_chr17:g.7251129dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	33369	NA	0	52	10	54
P-0040988-T01-IM6	SOMATIC	JAK1	DEPTOR	8	1	121037868	65323270	Intron of DEPTOR(+):16Kb after exon 8	Intron of JAK1(-):68bp after exon 10	GRCh37	TRANSLOCATION	JAK1 (NM_002227) - DEPTOR (NM_022783) rearrangement: t(1;8)(p31.3;q24.12)(chr1:g.65323270::chr8:g.121037868)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {JAK1:DEPTOR}	0	NA	0	7	10	6
P-0041195-T01-IM6	SOMATIC	DNMT1	DNMT1	19	7	10251424	73207485	Intron of DNMT1(-):32bp after exon 31	IGR: 24Kb before CLDN3(-)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(7;19)(q11.23;p13.2)(chr7:g.73207485::chr19:g.10251424)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	28	10	29
P-0041195-T01-IM6	SOMATIC	KAZN	FLT4	5	1	180041178	14926448	Exon 24 of FLT4(-)	Intron of KAZN(+):729bp after exon 1	GRCh37	TRANSLOCATION	KAZN (NM_201628) - FLT4 (NM_182925) rearrangement: t(1;5)(p36.21;q35.3)(chr1:g.14926448::chr5:g.180041178)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KAZN:FLT4}	0	NA	0	910	10	5749
P-0041195-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55089805	55222380	Intron of EGFR(+):3Kb after exon 1	Intron of EGFR(+):535bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+2747_c.889+535del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	132575	NA	0	167	10	176
P-0041195-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55229966	55238238	Intron of EGFR(+):642bp after exon 13	Intron of EGFR(+):629bp before exon 16	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1631+642_c.1881-630del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	8272	NA	0	9	10	9
P-0041195-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268253	55270804	Intron of EGFR(+):147bp after exon 24	Intron of EGFR(+):486bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+147_c.3271+486del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2551	NA	0	13	0	14
P-0041310-T01-IM6	SOMATIC	PBRM1	PBRM1	3	3	39820565	52675942	IGR: 30Kb before MYRIP(+)	Intron of PBRM1(-):27bp after exon 11	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1087+28:PBRM1_chr3:g.39820565del	PRECISE		MANUAL_OK	3to5	-	12855377	NA	0	30	10	47
P-0041418-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49425818	49607473	Exon 39 of KMT2D(-)	IGR: 29Kb before TUBA1A(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.12670:KMT2D_chr12:g.49607473dup	PRECISE		MANUAL_OK	5to3	-	181655	NA	0	3	6	3
P-0041471-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	20	31363836	31375195	5-UTR of DNMT3B(+):4Kb before coding start	Exon 6 of DNMT3B(+)	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.592:DNMT3B_chr20:g.31363836inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11359	NA	0	6	10	6
P-0041516-T01-IM6	SOMATIC	TAP1	TAP1	6	6	32814968	32815953	Exon 10 of TAP1(-)	Intron of TAP1(-):84bp before exon 8	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: c.1747-84_c.2097del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	985	NA	0	8	0	9
P-0041516-T01-IM6	SOMATIC	NTRK2	TRPM3	9	9	73729765	87480893	Intron of TRPM3(-):6Kb after exon 1	Intron of NTRK2(+):1Kb before exon 16	GRCh37	INVERSION	NTRK2 (NM_006180) - TRPM3 (NM_001007471) rearrangement: c.1445-1265:NTRK2_c.177+6329:TRPM3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NTRK2:TRPM3}	13751128	NA	1	84	10	83
P-0041583-T01-IM6	SOMATIC	ERCC5	USH2A	13	1	103514908	215859641	Exon 8 of ERCC5(+)	Intron of USH2A(-):6Kb before exon 62	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) - USH2A (NM_206933) rearrangement: t(1;13)(q41;q33.1)(chr1:g.215859641::chr13:g.103514908)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ERCC5:USH2A}	0	NA	0	8	10	8
P-0041611-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89346344	89349798	Exon 9 of ANKRD11(-)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.3152_c.6606del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3454	NA	0	44	10	51
P-0041637-T01-IM6	SOMATIC	PDGFRB	PDGFRB	5	5	67335726	149514541	IGR: 150Kb before LOC102467655(+)	Exon 4 of PDGFRB(-)	GRCh37	INVERSION	PDGFRB (NM_002609) rearrangement: c.403:PDGFRB_chr5:g.67335726inv	PRECISE		MANUAL_OK	3to3	-	82178815	NA	0	89	10	89
P-0041866-T01-IM6	SOMATIC	ELF3	CSAD	12	1	53556508	201981995	Intron of CSAD(-):1Kb before exon 2	Intron of ELF3(+):79bp before exon 6	GRCh37	TRANSLOCATION	ELF3 (NM_004433) - CSAD (NM_001244705) rearrangement: t(1;12)(q32.1;q13.13)(chr1:g.201981995::chr12:g.53556508)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ELF3:CSAD}	0	NA	0	15	10	16
P-0041866-T01-IM6	SOMATIC	RASAL3	AXL	19	19	15563614	41754326	Exon 16 of RASAL3(-)	Intron of AXL(+):92bp before exon 13	GRCh37	INVERSION	RASAL3 (NM_022904) - AXL (NM_021913) rearrangement: c.2683:RASAL3_c.1538-93:AXLinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RASAL3:AXL}	26190712	NA	0	12	0	12
P-0041866-T01-IM6	SOMATIC	SLC34A1	NSD1	5	5	176722298	176817240	Exon 23 of NSD1(+)	Intron of SLC34A1(+):2Kb after exon 8	GRCh37	DUPLICATION	SLC34A1 (NM_003052) - NSD1 (NM_022455) rearrangement: c.936+1867:SLC34A1_c.7929:NSD1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SLC34A1:NSD1}	94942	NA	0	2	9	2
P-0041884-T01-IM6	SOMATIC	PAK1	RAB6A	11	11	73394568	77051735	Intron of RAB6A(-):4Kb before exon 4	Exon 11 of PAK1(-)	GRCh37	DELETION	PAK1 (NM_002576) - RAB6A (NM_002869) rearrangement: c.1072:PAK1_c.496-3803:RAB6Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PAK1:RAB6A}	3657167	NA	0	11	10	16
P-0041967-T01-IM6	SOMATIC	EML4	ALK	2	2	29448147	42523103	Intron of ALK(-):179bp after exon 19	Intron of EML4(+):447bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+447:EML4_c.3172+180:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13074956	NA	0	39	10	39
P-0042090-T01-IM6	SOMATIC	RBM10	RBM10	X	X	47037542	47041844	Intron of RBM10(+):959bp before exon 8	Intron of RBM10(+):119bp after exon 17	GRCh37	DUPLICATION	RBM10 (NM_001204468) rearrangement: c.859-960_c.2145+119dup	PRECISE		MANUAL_OK	5to3	Duplication of 10 exons : in frame	4302	NA	0	12	10	11
P-0042202-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11853190	12010696	Intron of ETV6(+):50Kb after exon 1	Intron of ETV6(+):4Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.33+50096_c.463+4201del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	157506	NA	0	4	10	4
P-0042214-T01-IM6	SOMATIC	FOXO1	FOXO1	13	13	41134351	41143515	Exon 2 of FOXO1(-)	Intron of FOXO1(-):9Kb before exon 2	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement: c.631-8518_c.1277inv	PRECISE		MANUAL_OK	3to3	-	9164	NA	0	7	5	7
P-0042214-T01-IM6	SOMATIC	STAT5A	GAST	17	17	39872004	40451887	Intron of GAST(+):25bp before exon 3	Exon 7 of STAT5A(+)	GRCh37	DUPLICATION	STAT5A (NM_003152) - GAST (NM_000805) rearrangement: c.669:STAT5A_c.212-26:GASTdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STAT5A:GAST}	579883	NA	0	17	10	24
P-0042222-T02-IM6	SOMATIC	BCL2	BCL2	18	18	59604842	60950118	IGR: 107Kb before PIGN(-)	Intron of BCL2(-):35Kb after exon 2	GRCh37	INVERSION	BCL2 (NM_000633) rearrangement: c.585+35197:BCL2_chr18:g.59604842inv	PRECISE		MANUAL_OK	5to5	-	1345276	NA	0	4	10	4
P-0042222-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11066021	11137027	IGR: 6Kb before SMARCA4(+)	Intron of SMARCA4(+):5bp after exon 23	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3215+5:SMARCA4_chr19:g.11066021del	PRECISE		MANUAL_OK	3to5	-	71006	NA	0	7	10	7
P-0042222-T02-IM6	SOMATIC	TP53	TP53	20	17	48328389	7579520	Intron of B4GALT5(-):2Kb after exon 1	Exon 4 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.13)(chr17:g.7579520::chr20:g.48328389)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	NA	0	22	10	30
P-0042222-T03-IM6	SOMATIC	TP53	TP53	20	17	48337428	7579704	IGR: 88Kb before B4GALT5(-)	Exon 3 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.13)(chr17:g.7579704::chr20:g.48337428)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	9	0	9
P-0042344-T01-IM6	SOMATIC	MDM2	MDM2	12	7	69230523	115222723	Exon 10 of MDM2(+)	IGR: 352Kb before TFEC(-)	GRCh37	TRANSLOCATION	MDM2 (NM_002392) rearrangement: t(7;12)(q31.2;q15)(chr7:g.115222723::chr12:g.69230523)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	9	10	9
P-0042344-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55171076	55222149	Intron of EGFR(+):39Kb before exon 2	Intron of EGFR(+):304bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-38903_c.889+304del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	51073	NA	0	132	0	135
P-0042526-T02-IM6	SOMATIC	PRCC	NTRK1	1	1	156764610	156834591	Intron of PRCC(+):10bp after exon 5	Exon 3 of NTRK1(+)	GRCh37	DELETION	PRCC (NM_005973) - NTRK1 (NM_002529) fusion: c.1323+10:PRCC_c.359:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PRCC:NTRK1}	69981	NA	0	2	5	1
P-0042596-T02-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	10625811	25469336	IGR: 36Kb before LOC101929715(+)	Intron of DNMT3A(-):152bp after exon 10	GRCh37	INVERSION	DNMT3A (NM_022552) rearrangement: c.1279+153:DNMT3A_chr2:g.10625811inv	PRECISE		MANUAL_OK	5to5	-	14843525	NA	0	12	10	12
P-0042596-T02-IM6	SOMATIC	SQSTM1	ALK	5	2	179254603	29446511	Intron of SQSTM1(+):2Kb after exon 6	Intron of ALK(-):117bp before exon 20	GRCh37	TRANSLOCATION	SQSTM1 (NM_003900) - ALK (NM_004304) fusion: t(2;5)(p23.2;q35.3)(chr2:g.29446511::chr5:g.179254603)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SQSTM1:ALK}	0	NA	0	34	10	39
P-0042713-T01-IM6	SOMATIC	TNFAIP3	TNFAIP3	6	6	138197305	138203304	Intron of TNFAIP3(+):2bp after exon 5	3-UTR of TNFAIP3(+):11Kb after coding stop	GRCh37	DELETION	TNFAIP3 (NM_006290) rearrangement: c.805+2:TNFAIP3_chr6:g.138203304del	PRECISE		MANUAL_OK	3to5	-	5999	NA	0	19	10	21
P-0042736-T01-IM6	SOMATIC	RPGRIP1L	FANCA	16	16	53727043	89839857	Intron of RPGRIP1L(-):767bp before exon 4	Intron of FANCA(-):65bp before exon 22	GRCh37	DUPLICATION	RPGRIP1L (NM_015272) - FANCA (NM_000135) rearrangement: c.231-767:RPGRIP1L_c.1901-65:FANCAdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RPGRIP1L:FANCA}	36112814	NA	0	10	0	10
P-0042789-T01-IM6	SOMATIC	LATS1	LATS1	6	6	149983166	170579583	Exon 8 of LATS1(-)	3-UTR of LOC285804(-):6Kb after coding stop	GRCh37	INVERSION	LATS1 (NM_004690) rearrangement: c.3092:LATS1_chr6:g.170579583inv	PRECISE		MANUAL_OK	3to3	-	20596417	NA	0	13	10	12
P-0042800-T01-IM6	SOMATIC	RPTOR	MAP3K3	17	17	61705585	78865867	Intron of MAP3K3(+):4Kb before exon 2	Intron of RPTOR(+):230bp after exon 18	GRCh37	DUPLICATION	RPTOR (NM_020761) - MAP3K3 (NM_002401) rearrangement: c.2101+230:RPTOR_c.5-4456:MAP3K3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RPTOR:MAP3K3}	17160282	NA	0	6	10	6
P-0042801-T01-IM6	SOMATIC	KCNK13	AKT1	14	14	90533347	105239621	Intron of KCNK13(+):4Kb after exon 1	Exon 10 of AKT1(-)	GRCh37	INVERSION	KCNK13 (NM_022054) - AKT1 (NM_001014431) rearrangement: c.334+4464:KCNK13_c.924:AKT1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {KCNK13:AKT1}	14706274	NA	0	60	10	57
P-0042863-T01-IM6	SOMATIC	RHEB	RHEB	7	7	151167461	151216548	Intron of RHEB(-):195bp after exon 7	Exon 1 of RHEB(-)	GRCh37	INVERSION	RHEB (NM_005614) rearrangement: c.50_c.462+196inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	49087	NA	0	3	8	5
P-0042874-T01-IM6	SOMATIC	EGFR	EGFR	17	7	19540903	55241239	IGR: 11Kb before ALDH3A2(+)	Intron of EGFR(+):374bp before exon 18	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;17)(p11.2;p11.2)(chr7:g.55241239::chr17:g.19540903)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	8	6
P-0042874-T01-IM6	SOMATIC	PAK7	PAK7	20	18	9546741	75150951	Exon 5 of PAK7(-)	IGR: 189Kb before GALR1(+)	GRCh37	TRANSLOCATION	PAK7 (NM_177990) rearrangement: t(18;20)(q23;p12.2)(chr18:g.75150951::chr20:g.9546741)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	12	10	13
P-0042912-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974674	22055601	Exon 1 of CDKN2A(-)	5-UTR of CDKN2B-AS1(+):65Kb before coding start	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3467:CDKN2A_chr9:g.22055601del	PRECISE		MANUAL_OK	3to5	-	80927	NA	0	13	10	17
P-0042935-T01-IM6	SOMATIC	MET	MET	7	1	116412969	1138847	Intron of MET(+):926bp after exon 14	Promoter of TNFRSF18(-):40bp from tx start	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(1;7)(p36.33;q31.2)(chr1:g.1138847::chr7:g.116412969)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TNFRSF18:MET}	0	NA	0	37	10	45
P-0043006-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71943340	71950198	Exon 14 of INPPL1(+)	Promoter of INPPL1(+):14Kb from tx start	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.1672:INPPL1_chr11:g.71950198del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6858	NA	0	36	10	37
P-0043006-T01-IM6	SOMATIC	CCND2	ZFR	12	5	4398048	32414448	Exon 4 of CCND2(+)	Intron of ZFR(-):625bp after exon 5	GRCh37	TRANSLOCATION	CCND2 (NM_001759) - ZFR (NM_016107) rearrangement: t(5;12)(p13.3;p13.32)(chr5:g.32414448::chr12:g.4398048)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CCND2:ZFR}	0	NA	1	1001	10	1168
P-0043006-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	8	89341087	15182373	Intron of ANKRD11(-):134bp after exon 11	IGR: 215Kb before TUSC3(+)	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) rearrangement: t(8;16)(p22;q24.3)(chr8:g.15182373::chr16:g.89341087)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	48	10	56
P-0043078-T01-IM6	SOMATIC	CHEK2	TTC28	22	22	28901964	29130683	Intron of TTC28(-):124Kb after exon 2	Exon 2 of CHEK2(-)	GRCh37	DELETION	CHEK2 (NM_007194) - TTC28 (NM_001145418) rearrangement: c.27:CHEK2_c.381+123576:TTC28del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CHEK2:TTC28}	228719	NA	0	17	10	17
P-0043150-T01-IM6	SOMATIC	BRCA1	BRCA1	17	17	41221747	41249124	Intron of BRCA1(-):1Kb after exon 15	Intron of BRCA1(-):136bp after exon 8	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.593+137_c.4986+1198del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	27377	NA	0	55	10	58
P-0043242-T01-IM6	SOMATIC	H3F3C	H3F3C	12	12	25464235	31944791	IGR: 107Kb before KRAS(-)	Exon 1 of H3F3C(-)	GRCh37	DELETION	H3F3C (NM_001013699) rearrangement: c.310:H3F3C_chr12:g.25464235del	PRECISE		MANUAL_OK	3to5	-	6480556	NA	0	9	10	16
P-0043247-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55180481	55222330	Intron of EGFR(+):29Kb before exon 2	Intron of EGFR(+):485bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-29498_c.889+485del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	41849	NA	0	55	0	405
P-0043350-T01-IM6	SOMATIC	EML4	ALK	2	2	29447513	42503973	Intron of ALK(-):813bp after exon 19	Intron of EML4(+):4Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4017:EML4_c.3172+814:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13056460	NA	0	64	10	63
P-0043474-T01-IM6	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	NA	0	4	8	4
P-0043578-T01-IM6	SOMATIC	FGFR2	FGFR2	10	6	123240437	155236156	Intron of FGFR2(-):902bp before exon 18	IGR: 175Kb before TIAM2(+)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(6;10)(q25.2;q26.13)(chr6:g.155236156::chr10:g.123240437)	IMPPRECISE		MANUAL_OK	3to5	-	0	NA	0	9	0	9
P-0043578-T01-IM6	SOMATIC	MGA	MGA	15	3	42005393	165841256	Exon 9 of MGA(+)	IGR: 351Kb before BCHE(-)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(3;15)(q26.1;q15.1)(chr3:g.165841256::chr15:g.42005393)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	21	10	20
P-0043578-T01-IM6	SOMATIC	ACSBG2	BRD4	19	19	6149125	15355243	Intron of ACSBG2(+):1Kb after exon 3	Exon 13 of BRD4(-)	GRCh37	INVERSION	ACSBG2 (NM_030924) - BRD4 (NM_058243) rearrangement: c.297+1439:ACSBG2_c.2380:BRD4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ACSBG2:BRD4}	9206118	NA	0	18	10	17
P-0043593-T01-IM6	SOMATIC	YES1	YES1	18	18	756631	766182	Exon 2 of YES1(-)	5-UTR of YES1(-):42Kb before coding start	GRCh37	DELETION	YES1 (NM_005433) rearrangement: c.197:YES1_chr18:g.766182del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9551	NA	0	40	10	42
P-0043612-T01-IM6	SOMATIC	CTNNB1	CTNNB1	3	3	41259809	41266384	5-UTR of CTNNB1(+):6Kb before coding start	Intron of CTNNB1(+):60bp before exon 4	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.242-61:CTNNB1_chr3:g.41259809del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	6575	NA	0	20	10	20
P-0043628-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21970488	21974493	Intron of CDKN2A(-):412bp after exon 2	Exon 1 of CDKN2A(-)	GRCh37	INVERSION	CDKN2A (NM_000077) rearrangement: c.457+413_c.194-3286inv	PRECISE		MANUAL_OK	3to3	-	4005	NA	0	4	10	4
P-0043938-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43962372	117651208	Intron of SDC4(-):663bp before exon 3	Intron of ROS1(-):599bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117651208::chr20:g.43962372)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	NA	0	8	10	17
P-0044139-T01-IM6	SOMATIC	TP53	TP53	17	17	7571174	7574025	Promoter of TP53(-):545bp from tx start	Exon 10 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1002:TP53_chr17:g.7571174del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2851	NA	0	3	7	3
P-0044139-T01-IM6	SOMATIC	MAP3K14	MAP3K14	17	17	43367703	43373819	Intron of MAP3K14(-):152bp after exon 2	5-UTR of MAP3K14(-):32Kb before coding start	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.256+153:MAP3K14_chr17:g.43373819inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6116	NA	0	21	10	21
P-0044139-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098919	178101163	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):2Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-2164_c.126del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2244	NA	0	133	10	138
P-0044179-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	39003589	39004844	Intron of RICTOR(-):70bp after exon 4	Intron of RICTOR(-):1Kb before exon 4	GRCh37	DUPLICATION	RICTOR (NM_152756) rearrangement: c.196-1120_c.260+71dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1255	NA	0	34	10	37
P-0044317-T01-IM6	SOMATIC	GLI1	GLI1	12	12	49358370	57861730	Promoter of WNT10B(-):752bp from tx start	Intron of GLI1(+):46bp before exon 10	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.1078-47:GLI1_chr12:g.49358370inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {WNT10B:GLI1}	8503360	NA	0	36	10	44
P-0044335-T01-IM6	SOMATIC	RASA1	RASA1	5	5	82942092	86672065	Intron of HAPLN1(-):2Kb before exon 4	Intron of RASA1(+):144bp before exon 16	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2012-145:RASA1_chr5:g.82942092del	PRECISE		MANUAL_OK	3to5	-	3729973	NA	0	15	10	15
P-0044335-T01-IM6	SOMATIC	PTPRD	PTPRD	9	9	8485077	8492070	Intron of PTPRD(-):149bp after exon 29	Intron of PTPRD(-):791bp after exon 27	GRCh37	DUPLICATION	PTPRD (NM_002839) rearrangement: c.2467+792_c.3153+150dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	6993	NA	0	18	10	20
P-0044441-T01-IM6	SOMATIC	RB1	RB1	13	13	48952824	48954245	Intron of RB1(+):905bp before exon 14	Intron of RB1(+):25bp after exon 15	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1333-906_c.1421+25del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1421	NA	0	97	10	100
P-0044475-T01-IM6	SOMATIC	TP53	TP53	17	17	7575529	7578035	Intron of TP53(-):1Kb after exon 9	Intron of TP53(-):141bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+142_c.993+1324del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2506	NA	0	13	10	13
P-0044475-T01-IM6	SOMATIC	BCL6	BCL6	22	3	34770793	187444650	IGR: 650Kb before LARGE-AS1(+)	Exon 7 of BCL6(-)	GRCh37	TRANSLOCATION	BCL6 (NM_001706) rearrangement: t(3;22)(q27.3;q12.3)(chr3:g.187444650::chr22:g.34770793)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	9	10	8
P-0044475-T01-IM6	SOMATIC	EPHA3	EPHA3	3	3	89448538	106473529	Exon 7 of EPHA3(+)	IGR: 355Kb before LINC00882(-)	GRCh37	INVERSION	EPHA3 (NM_005233) rearrangement: c.1502:EPHA3_chr3:g.106473529inv	PRECISE		MANUAL_OK	5to5	-	17024991	NA	0	10	10	12
P-0044523-T02-IM6	SOMATIC	EWSR1	ERG	22	21	29684618	39762554	Exon 9 of EWSR1(+)	Intron of ERG(-):362bp after exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39762554::chr22:g.29684618)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EWSR1:ERG}	0	NA	0	102	10	102
P-0044771-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49330097	49416483	3-UTR of ARF3(-):3Kb after coding stop	Exon 51 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) rearrangement: c.16228:KMT2D_chr12:g.49330097del	PRECISE		MANUAL_OK	3to5	-	86386	NA	0	7	10	7
P-0044785-T01-IM6	SOMATIC	ETV6	ETV6	12	12	11969496	12008832	Intron of ETV6(+):23Kb before exon 3	Intron of ETV6(+):2Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.164-22578_c.463+2337del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	39336	NA	0	4	10	9
P-0044827-T01-IM6	SOMATIC	SMAD3	ASPSCR1	17	15	79944678	67482866	Intron of ASPSCR1(+):1Kb after exon 4	Exon 9 of SMAD3(+)	GRCh37	TRANSLOCATION	SMAD3 (NM_005902) - ASPSCR1 (NM_001251888) rearrangement: t(15;17)(q22.33;q25.3)(chr15:g.67482866::chr17:g.79944678)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SMAD3:ASPSCR1}	0	NA	0	55	10	54
P-0044845-T01-IM6	SOMATIC	GTF2I	BRAF	7	7	74129181	140485631	Exon 10 of GTF2I(+)	Intron of BRAF(-):2Kb after exon 9	GRCh37	INVERSION	GTF2I (NM_032999) - BRAF (NM_004333) fusion: c.768:GTF2I_c.1177+1717:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {GTF2I:BRAF}	66356450	NA	0	36	10	35
P-0044912-T01-IM6	SOMATIC	EED	EED	11	11	85914785	85979611	IGR: 41Kb before EED(+)	Intron of EED(+):8bp after exon 9	GRCh37	INVERSION	EED (NM_003797) rearrangement: c.966+8:EED_chr11:g.85914785inv	PRECISE		MANUAL_OK	3to3	-	64826	NA	0	4	5	4
P-0045021-T02-IM6	SOMATIC	MDC1	MDC1	12	6	54395616	30681621	Intron of HOXC9(+):597bp before exon 2	Exon 3 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;12)(p21.33;q13.13)(chr6:g.30681621::chr12:g.54395616)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	70	10	72
P-0054241-T01-IM6	SOMATIC	RFWD2	RFWD2	1	1	175102716	176175963	Intron of TNN(+):2Kb before exon 16	Exon 1 of RFWD2(-)	GRCh37	DELETION	RFWD2 (NM_022457) rearrangement: c.152:RFWD2_chr1:g.175102716del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1073247	NA	0	155	10	165
P-0056566-T03-IM7	SOMATIC	PDCD1LG2	GLIS3	9	9	4010404	5549504	Intron of GLIS3(-):73Kb before exon 5	Exon 4 of PDCD1LG2(+)	GRCh37	INVERSION	PDCD1LG2 (NM_025239) - GLIS3 (NM_001042413) rearrangement: c.531:PDCD1LG2_c.1711-73215:GLIS3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PDCD1LG2:GLIS3}	1539100	NA	0	61	10	60
P-0056858-T01-IM6	SOMATIC	ETV6	ETV6	12	9	12035511	28739781	Intron of ETV6(+):2Kb before exon 6	5-UTR of LINGO2(-):791Kb before coding start	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(9;12)(p21.1;p13.2)(chr9:g.28739781::chr12:g.12035511)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {ETV6:LINGO2}	0	NA	0	70	10	69
P-0057597-T01-IM6	SOMATIC	TCF3	FBRSL1	19	12	1623791	133117068	Intron of TCF3(-):158bp after exon 7	Intron of FBRSL1(+):8Kb before exon 5	GRCh37	TRANSLOCATION	TCF3 (NM_001136139) - FBRSL1 (NM_001142641) rearrangement: t(12;19)(q24.33;p13.3)(chr12:g.133117068::chr19:g.1623791)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {TCF3:FBRSL1}	0	NA	0	6	10	8
P-0057597-T01-IM6	SOMATIC	RTEL1	PKP2	20	12	62309782	33044173	Intron of RTEL1(+):83bp after exon 12	Intron of PKP2(-):5Kb after exon 1	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) - PKP2 (NM_001005242) rearrangement: t(12;20)(p11.21;q13.33)(chr12:g.33044173::chr20:g.62309782)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RTEL1:PKP2}	0	NA	0	47	10	44
P-0062530-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2132380	2136575	Intron of TSC2(+):56bp before exon 32	Intron of TSC2(+):157bp before exon 38	GRCh37	DUPLICATION	TSC2 (NM_000548) rearrangement: c.3815-57_c.4850-158dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	4195	60	0	18	10	20
P-0062530-T01-IM7	SOMATIC	BCR	MYC	22	8	23623147	128753046	Intron of BCR(+):3Kb before exon 9	Exon 3 of MYC(+)	GRCh37	TRANSLOCATION	BCR (NM_004327) - MYC (NM_002467) rearrangement: t(8;22)(q24.21;q11.23)(chr8:g.128753046::chr22:g.23623147)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {BCR:MYC}	0	60	0	36	10	38
P-0062530-T01-IM7	SOMATIC	CSF1R	NME7	5	1	149457705	169305070	Exon 5 of CSF1R(-)	Intron of NME7(-):11Kb before exon 2	GRCh37	TRANSLOCATION	CSF1R (NM_005211) - NME7 (NM_013330) rearrangement: t(1;5)(q24.2;q32)(chr1:g.169305070::chr5:g.149457705)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CSF1R:NME7}	0	60	0	7	10	7
P-0000825-T02-IM6	SOMATIC	ERF	ERF	19	9	42754581	136276321	Exon 2 of ERF(-)	Intron of REXO4(-):128bp before exon 3	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(9;19)(q34.2;q13.2)(chr9:g.136276321::chr19:g.42754581)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	41	10	41
P-0000840-T01-IM3	SOMATIC	ROS1	CD74	6	5	117646938	149783508	Intron of ROS1(-): 449bp after exon 33	Intron of CD74(-): 633bp before exon 7	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - CD74 (NM_001025158) Translocation:  t(6;5)(q22.1;q32)(chr6:g.117646938::chr5:g.149783508)	PRECISE		AUTO_OK	3to5	Protein fusion: in frame (CD74-ROS1)	0	NA	0	3	5	9
P-0004934-T01-IM5	SOMATIC	TAOK1	NF1	17	17	27793394	29527419	Intron of TAOK1(+): 769bp before exon 3	Intron of NF1(+): 21bp before exon 9	GRCh37	DELETION	TAOK1 (NM_020791) - NF1 (NM_001042492) rearrangement : c.133-769:TAOK1_c.889-21:NF1del	PRECISE		MANUAL_OK	3to5	Protein fusion: in frame (TAOK1-NF1)	1734025	NA	0	5	4	5
P-0005436-T04-IM7	SOMATIC	SMAD3	SMAD3	15	9	67459189	110787517	Exon 4 of SMAD3(+)	IGR: 540Kb before KLF4(-)	GRCh37	TRANSLOCATION	SMAD3 (NM_005902) rearrangement: t(9;15)(q31.2;q22.33)(chr9:g.110787517::chr15:g.67459189)	PRECISE		MANUAL_OK	5to3	-	0	60	0	30	10	30
P-0006921-T01-IM5	SOMATIC	ROS1	SLC34A2	6	4	117648517	25679037	Intron of ROS1(-): 940bp before exon 33	3-UTR of SLC34A2(+): 666bp after coding stop	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - SLC34A2(NM_006424) rearrangement : t(4;6) (p15;q22)(chr4:g.25679037::chr6:g.117648517)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	51	34	50
P-0006921-T01-IM5	SOMATIC	FAM135B	ROS1	8	6	138220899	117648534	IGR: 921Kb before FAM135B(-)	Intron of ROS1(-): 957bp before exon 33	GRCh37	TRANSLOCATION	FAM135B (NM_015912) - ROS1 (NM_002944) rearrangement : t(6;8)(q22;q24)(chr6:g.117648534::chr8:g.138220899)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	67	21	66
P-0014833-T02-IM6	SOMATIC	ERC1	BRAF	12	7	1246645	140490668	Intron of ERC1(+):4Kb before exon 7	Intron of BRAF(-):3Kb before exon 9	GRCh37	TRANSLOCATION	ERC1 (NM_178040) - BRAF (NM_004333) fusion: t(7;12)(q34;p13.33)(chr7:g.140490668::chr12:g.1246645)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ERC1:BRAF}	0	NA	0	9	10	8
P-0014932-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38271825	38274213	Intron of FGFR1(-): 18bp before exon 15	Intron of FGFR1(-): 611bp after exon 11	GRCh37	DELETION	FGFR1 (NM_001174067) Rearrangement : c.1756+611_c.2142-18del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons: out of frame	2388	NA	0	43	47	37
P-0018245-T01-IM6	SOMATIC	RAD51B	RAD51B	14	14	68758624	68760491	Exon 8 of RAD51B(+)	Intron of RAD51B(+):2Kb after exon 8	GRCh37	INVERSION	RAD51B (NM_133509) rearrangement: c.780_c.853+1794inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1867	NA	0	7	10	7
P-0018245-T01-IM6	SOMATIC	KMT2B	KMT2B	20	19	19374059	36216347	Intron of SLC24A3(+):112Kb after exon 2	Intron of KMT2B(+):32bp before exon 12	GRCh37	TRANSLOCATION	KMT2B (NM_014727) rearrangement: t(19;20)(q13.12;p11.23)(chr19:g.36216347::chr20:g.19374059)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	20
P-0018916-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2B	9	9	21970626	22008795	Intron of CDKN2A(-):274bp after exon 2	Intron of CDKN2B(-):1bp after exon 1	GRCh37	INVERSION	CDKN2Ap16INK4A (NM_000077) - CDKN2B (NM_004936) rearrangement: c.457+275:CDKN2Ap16INK4A_c.156+2:CDKN2Binv	PRECISE		MANUAL_OK	3to3	-	38169	NA	0	7	10	7
P-0019303-T02-IM6	SOMATIC	STAT5B	STAT5B	17	17	37367870	40359544	3-UTR of STAC2(-):674bp after coding stop	Intron of STAT5B(-):31bp after exon 16	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement: c.2077+32:STAT5B_chr17:g.37367870inv	PRECISE		MANUAL_OK	5to5	-	2991674	NA	0	39	10	40
P-0021839-T01-IM6	SOMATIC	CDK12	CDK12	17	7	37681073	4787537	Exon 12 of CDK12(+)	Intron of FOXK1(+):7Kb before exon 3	GRCh37	TRANSLOCATION	CDK12 (NM_016507) Rearrangement : t(7,17)(p22.1,q12)(chr7:g.4787537::chr17:g.37681073)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	15
P-0024556-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72718236	72993629	IGR: 99Kb before ZFHX3(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) Rearrangement: chr16:g.72718236_c.416:ZFHX3del	PRECISE		MANUAL_OK	3to5	-	275393	NA	0	4	10	4
P-0024556-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	146699948	151860842	Intron of CNTNAP2(+):41Kb before exon 4	Exon 43 of KMT2C(-)	GRCh37	DELETION	KMT2C (NM_170606) Rearrangement : c.403-41051:CNTNAP2_c.9820:KMT2Cdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	5160894	NA	0	39	10	40
P-0025040-T01-IM6	SOMATIC	EML4	ALK	2	2	29447152	42526441	Intron of ALK(-):758bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exon 12 fused to ALK exon 20) :  c.1316-1940:EML4_c.3173-758:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079289	NA	0	56	10	56
P-0025573-T02-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11092136	11098306	5-UTR of SMARCA4(+):3Kb before coding start	Intron of SMARCA4(+):35bp before exon 6	GRCh37	INVERSION	SMARCA4 (NM_003072) rearrangement: c.-31-2661_c.860-36inv	PRECISE		MANUAL_OK	5to5	-	6170	NA	0	53	10	84
P-0025714-T03-IM6	SOMATIC	NOS1AP	MCL1	1	1	150551537	162286925	Exon 1 of MCL1(-)	Intron of NOS1AP(+):16Kb before exon 5	GRCh37	INVERSION	NOS1AP (NM_014697) - MCL1 (NM_021960) rearrangement: c.345-15882:NOS1AP_c.470:MCL1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NOS1AP:MCL1}	11735388	NA	0	20	10	20
P-0026022-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2222042	2362078	Exon 24 of DOT1L(+)	IGR: 28Kb before TMPRSS9(+)	GRCh37	DUPLICATION	DOT1L (NM_032482) rearrangement: c.2874_chr19:g.2362078dup	PRECISE		MANUAL_OK	5to3	-	140036	NA	0	27	10	28
P-0028081-T01-IM6	SOMATIC	EZR	ROS1	6	6	117647275	159191511	Intron of ROS1(-):111bp after exon 33	Intron of EZR(-):284bp after exon 9	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1090+285:EZR_c.5557+112:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41544236	NA	0	45	10	45
P-0028917-T01-IM6	SOMATIC	SPEN	PLEKHM2	1	1	16032402	16258858	Intron of PLEKHM2(+):10Kb before exon 2	Exon 11 of SPEN(+)	GRCh37	DUPLICATION	SPEN (NM_015001) - PLEKHM2 (NM_015164) rearrangement:  c.6123:SPEN_c.61-10330:PLEKHM2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SPEN:PLEKHM2}	226456	NA	0	5	10	5
P-0029225-T01-IM6	SOMATIC	AXL	AXL	19	19	18915509	41726707	IGR: 22Kb before COMP(-)	Exon 2 of AXL(+)	GRCh37	DELETION	AXL (NM_021913) Rearrangement: c.252:AXL_chr19:g.18915509del	PRECISE		MANUAL_OK	3to5	-	22811198	NA	0	56	10	69
P-0030471-T01-IM6	SOMATIC	TCF7L2	TCF7L2	10	10	114909810	114910818	Intron of TCF7L2(+):946bp before exon 9	Exon 9 of TCF7L2(+)	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.876-947_c.937del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1008	NA	0	9	10	9
P-0030471-T01-IM6	SOMATIC	KDM5C	KDM5C	X	X	11024795	53230928	IGR: 105Kb before HCCS(+)	Intron of KDM5C(-):2bp before exon 14	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: chrX:g.:11024795_c.1867-2inv	PRECISE		MANUAL_OK	5to5	-	42206133	NA	0	4	10	5
P-0031770-T01-IM6	SOMATIC	SF3B1	SF3B1	2	2	198299752	203507827	5-UTR of SF3B1(-):43Kb before coding start	Intron of FAM117B(+):7Kb after exon 1	GRCh37	DELETION	SF3B1 (NM_012433) rearrangement: c.-29:SF3B1_chr2:g.203507827del	PRECISE		MANUAL_OK	3to5	-	5208075	NA	0	6	10	6
P-0032211-T02-IM6	SOMATIC	TPH2	MDM2	12	12	69210665	72337659	Exon 4 of MDM2(+)	Intron of TPH2(+):414bp before exon 3	GRCh37	DUPLICATION	TPH2 (NM_173353) -  MDM2 (NM_002392) Rearrangement : c.256-415:TPH2_c.248:MDM2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TPH2:MDM2}	3126994	NA	0	19	0	24
P-0032282-T01-IM6	SOMATIC	AKAP10	FLCN	17	17	17125976	19829328	Intron of FLCN(-):1bp before exon 7	Intron of AKAP10(-):1Kb before exon 11	GRCh37	DELETION	AKAP10 (NM_007202) - FLCN (NM_144997) rearrangement: c.1642-1498:AKAP10_c.619-1:FLCNdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AKAP10:FLCN}	2703352	NA	0	139	10	157
P-0034334-T01-IM6	SOMATIC	EML4	ALK	2	2	29446570	42496780	Intron of ALK(-):176bp before exon 20	Intron of EML4(+):5Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4909:EML4_c.3173-176:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13050210	NA	0	100	10	99
P-0035694-T01-IM6	SOMATIC	EPYC	KEAP1	19	12	10600151	91372652	Intron of KEAP1(-):107bp before exon 5	Intron of EPYC(-):613bp before exon 3	GRCh37	TRANSLOCATION	EPYC (NM_004950) - KEAP1 (NM_203500) rearrangement: t(12;19)(q21.33;p13.2)(chr12:g.91372652::chr19:g.10600151)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EPYC:KEAP1}	0	NA	0	138	10	154
P-0035694-T01-IM6	SOMATIC	INSR	TYK2	19	19	7125440	10467006	Exon 17 of INSR(-)	Intron of TYK2(-):237bp after exon 18	GRCh37	DUPLICATION	INSR (NM_000208) - TYK2 (NM_003331) rearrangement: c.3112:INSR_c.2617+238:TYK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {INSR:TYK2}	3341566	NA	0	40	10	49
P-0035694-T01-IM6	SOMATIC	BRD9	TERT	5	5	892726	1295160	Exon 1 of BRD9(-)	5-UTR of TERT(-):41Kb before coding start	GRCh37	DUPLICATION	BRD9 (NM_023924) - TERT (NM_198253) rearrangement: c.47:BRD9_c.-56:TERTdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRD9:TERT}	402434	NA	0	9	10	13
P-0035890-T01-IM6	SOMATIC	FAM46C	FAM46C	1	1	118165860	118247292	Exon 2 of FAM46C(+)	IGR: 99Kb before FAM46C(+)	GRCh37	DELETION	FAM46C (NM_017709) rearrangement: c.370:FAM46C_chr1:g.118247292del	PRECISE		MANUAL_OK	3to5	-	81432	NA	0	28	10	33
P-0036134-T02-IM6	SOMATIC	XPO1	XPO1	2	2	61707450	61709394	Intron of XPO1(-):869bp after exon 24	Intron of XPO1(-):120bp after exon 23	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.2972+121_c.3069+870del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1944	NA	0	9	10	9
P-0037071-T01-IM6	SOMATIC	PTP4A1	PTP4A1	Y	6	13470086	64290023	IGR: 1Mb before GYG2P1(-)	Exon 6 of PTP4A1(+)	GRCh37	TRANSLOCATION	PTP4A1 (NM_003463) rearrangement: t(Y;6)(q11.21;q12)(chrY:g.13470086::chr6:g.64290023)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	14	10	26
P-0037082-T01-IM6	SOMATIC	TMPRSS2	TMPRSS2	21	21	40091831	42875001	IGR: 19Kb before LINC00114(-)	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) Rearrangement : c.55+4876:TMPRSS2_chr21:g.40091831del	PRECISE		MANUAL_OK	3to5	-	2783170	NA	0	30	10	33
P-0037226-T01-IM6	SOMATIC	PIK3R3	PIK3R3	1	1	46528920	46598399	Intron of PIK3R3(-):1Kb before exon 6	Promoter of PIK3R3(-):93Kb from tx start	GRCh37	DELETION	PIK3R3 (NM_003629) rearrangement: c.622-1177:PIK3R3_chr1:g.46598399del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	69479	NA	0	140	10	152
P-0037236-T01-IM6	SOMATIC	PAX5	PAX5	17	9	8339095	36923458	Promoter of NDEL1(+):74bp from tx start	Exon 7 of PAX5(-)	GRCh37	TRANSLOCATION	PAX5 (NM_016734) rearrangement: t(9;17)(p13.2;p13.1)(chr9:g.36923458::chr17:g.8339095)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PAX5:NDEL1}	0	NA	0	50	10	61
P-0037238-T01-IM6	SOMATIC	PRKCI	MECOM	3	3	168909986	169988339	Intron of MECOM(-):48Kb before exon 3	Exon 6 of PRKCI(+)	GRCh37	INVERSION	PRKCI (NM_002740) - MECOM (NM_004991) rearrangement: c.581:PRKCI_c.376-48366:MEMCOMinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRKCI:MECOM}	1078353	NA	0	11	10	18
P-0037267-T01-IM6	SOMATIC	EWSR1	FLI1	22	11	29688402	128672985	Intron of EWSR1(+):74bp before exon 12	Intron of FLI1(+):2Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion (EWSR1 exons 1-11 fused to FLI1 exons 6-9): t(11;22)(q24.3;q12.2)(chr11:g.128672985::chr22:g.29688402)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	NA	0	86	10	86
P-0037404-T01-IM6	SOMATIC	EML4	ALK	2	2	29447872	42496834	Intron of ALK(-):454bp after exon 19	Intron of EML4(+):5Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4963:EML4_c.3172+455:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13048962	NA	0	33	10	31
P-0037405-T01-IM6	SOMATIC	PTPRT	PTPRT	20	20	39792685	40820884	Intron of PLCG1(+):35bp before exon 12	Intron of PTPRT(-):7Kb after exon 17	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.2548+6996:PTPRT_chr20:g.39792685del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1028199	NA	0	5	6	5
P-0037465-T01-IM6	SOMATIC	CREBBP	SLX4	16	16	3647884	3825170	Exon 6 of SLX4(-)	Intron of CREBBP(-):476bp before exon 12	GRCh37	DELETION	CREBBP (NM_004380) - SLX4 (NM_03244) rearrangement: c.2159-476:CREBBP_c.1280:SLX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:SLX4}	177286	NA	0	25	10	25
P-0037465-T01-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139411867	139450872	Intron of NOTCH1(-):30bp before exon 9	IGR: 9Kb before LINC01573(+)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1442-30:NOTCH1_chr9:g.139450872del	PRECISE		MANUAL_OK	3to5	-	39005	NA	0	34	10	36
P-0037477-T01-IM6	SOMATIC	GNAI2	MYD88	3	3	38181916	50293515	Exon 3 of MYD88(+)	Intron of GNAI2(+):108bp before exon 5	GRCh37	DUPLICATION	GNAI2 (NM_002070) - MYD88 (NM_002468) Rearrangement : c.465-109:GNAI2_c.540:MYD88dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GNAI2:MYD88}	12111599	NA	0	9	10	14
P-0037517-T01-IM6	SOMATIC	NF1	NF1	17	17	29697164	29701048	Intron of NF1(+):4Kb before exon 58	Exon 58 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) Rearrangement : c.8378-3867_c.8395del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3884	NA	0	18	10	21
P-0037517-T01-IM6	SOMATIC	HIST1H3A	RHAG	6	6	26020927	49583021	Exon 1 of HIST1H3A(+)	Intron of RHAG(-):315bp after exon 4	GRCh37	INVERSION	HIST1H3A (NM_003529) - RHAG (NM_000324) Rearrangement : c.210:HIST1H3A_c.640+316:RHAGinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RHAG:HIST1H3A}	23562094	NA	0	10	10	12
P-0037577-T01-IM6	SOMATIC	ETV6	ETV6	12	12	12032343	18819650	Intron of ETV6(+):5Kb before exon 6	IGR: 16Kb before PLCZ1(-)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.1010-5036:ETV6_chr12:g.18819650del	PRECISE		MANUAL_OK	3to5	-	6787307	NA	0	8	10	8
P-0037618-T02-IM6	SOMATIC	IKBKE	IKBKE	1	1	180523683	206647719	IGR: 4Kb before OVAAL(+)	Exon 4 of IKBKE(+)	GRCh37	DELETION	IKBKE (NM_014002) rearrangement: c.133:IKBKE_chr1:g.180523683del	PRECISE		MANUAL_OK	3to5	-	26124036	NA	0	70	10	72
P-0037618-T02-IM6	SOMATIC	MDM4	MDM4	1	1	204254338	204507309	5-UTR of PLEKHA6(-):62Kb before coding start	Intron of MDM4(+):27bp before exon 7	GRCh37	INVERSION	MDM4 (NM_002393) rearrangement: c.412-28:MDM4_chr1:g.204254338inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {PLEKHA6:MDM4}	252971	NA	0	57	10	65
P-0037729-T01-IM6	SOMATIC	ZFHX3	ZFHX3	16	16	72798880	72829520	IGR: 18Kb before ZFHX3(-)	Exon 9 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.7061:ZFHX3_chr16:g.72798880del	PRECISE		MANUAL_OK	3to5	-	30640	NA	0	20	10	20
P-0037729-T01-IM6	SOMATIC	ETV1	ETV1	7	7	6669540	14025715	IGR: 7Kb before ZNF316(+)	Intron of ETV1(-):547bp after exon 4	GRCh37	DELETION	ETV1 (NM_001163147) rearrangement: c.181+548:ETV1_chr7:g.6669540del	IMPPRECISE		MANUAL_OK	3to5	-	7356175	NA	0	5	0	6
P-0037789-T01-IM6	SOMATIC	CDKN2Ap16INK4A	CDKN2Ap16INK4A	9	9	21968241	21970901	Exon 3 of CDKN2A(-)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2Ap16INK4A (NM_000077) rearrangement: c.457_c.458del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2660	NA	0	6	10	6
P-0038164-T01-IM6	SOMATIC	STMN3	RTEL1	20	20	62278942	62320417	Intron of STMN3(-):3Kb before exon 2	Exon 22 of RTEL1(+)	GRCh37	INVERSION	STMN3 (NM_015894) - RTEL1 (NM_032957) Rearrangement : c.20-3280:STMN3_c.1810:RTEL1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {STMN3:RTEL1}	41475	NA	0	9	10	12
P-0038972-T01-IM6	SOMATIC	WHSC1	WHSC1	4	4	119207	1936688	Intron of ZNF718(+):35Kb before exon 5	Intron of WHSC1(+):182bp before exon 7	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.1556-183:WHSC1_chr4:g.119207del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ZNF718:WHSC1}	1817481	NA	0	7	10	7
P-0039350-T02-IM6	SOMATIC	PDE11A	TP53	17	2	7577676	178626069	Intron of TP53(-):68bp before exon 7	Intron of PDE11A(-):8Kb after exon 9	GRCh37	TRANSLOCATION	PDE11A (NM_016953) - TP53 (NM_000546) rearrangement: t(2;17)(q31.2;p13.1)(chr2:g.178626069::chr17:g.7577676)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PDE11A:TP53}	0	NA	0	62	10	65
P-0039350-T02-IM6	SOMATIC	MYCN	MYCN	2	2	16082461	17411733	Exon 2 of MYCN(+)	IGR: 280Kb before RAD51AP2(-)	GRCh37	INVERSION	MYCN (NM_005378) rearrangement: c.275:MYCN_chr2:g.17411733inv	PRECISE		MANUAL_OK	5to5	-	1329272	NA	0	48	10	53
P-0039371-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55200530	55222232	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):387bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-9449_c.889+387del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	21702	NA	0	47	9	749
P-0039371-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55230683	55233051	Intron of EGFR(+):742bp before exon 14	Exon 15 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) vII intragenic deletion: c.1632-743_c.1801del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2368	NA	0	4	0	4
P-0039604-T01-IM6	SOMATIC	RET	RET	10	10	43611517	54088195	Intron of RET(+):514bp before exon 12	IGR: 14Kb before DKK1(+)	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.2137-515:RET_chr10:g.54088195inv	PRECISE		MANUAL_OK	5to5	-	10476678	NA	0	10	10	11
P-0039604-T01-IM6	SOMATIC	DNMT3B	DNMT3B	20	16	31390225	11628924	Exon 20 of DNMT3B(+)	IGR: 13Kb before LITAF(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(16;20)(p13.13;q11.21)(chr16:g.11628924::chr20:g.31390225)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	75	10	92
P-0039604-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55241220	55269410	Intron of EGFR(+):393bp before exon 18	Intron of EGFR(+):17bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-394_c.3115-18dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28190	NA	0	480	10	527
P-0039941-T01-IM6	SOMATIC	KIF5B	RET	10	10	32315316	43611339	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):692bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2040:KIF5B_c.2137-693:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296023	NA	0	45	10	51
P-0040258-T01-IM6	SOMATIC	ERRFI1	ERRFI1	1	1	8060312	8073454	IGR: 11Kb before ERRFI1(-)	Exon 4 of ERRFI1(-)	GRCh37	DELETION	ERRFI1 (NM_018948) rearrangement: c.1205:ERRFI1_chr1:g.8060312del	PRECISE		MANUAL_OK	3to5	-	13142	NA	0	3	8	4
P-0040313-T01-IM6	SOMATIC	INPPL1	INPPL1	11	11	71939414	81893992	Exon 3 of INPPL1(+)	3-UTR of LOC101928989(-):221Kb after coding stop	GRCh37	INVERSION	INPPL1 (NM_001567) rearrangement: c.269:INPPL1_chr11:g.81893992inv	PRECISE		MANUAL_OK	5to5	-	9954578	NA	0	47	10	52
P-0040366-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11143056	11144702	Intron of SMARCA4(+):909bp before exon 26	Intron of SMARCA4(+):96bp before exon 28	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3547-910_c.3874-97del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1646	NA	0	7	10	7
P-0040463-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151843765	151847844	Exon 53 of KMT2C(-)	Intron of KMT2C(-):140bp after exon 51	GRCh37	DUPLICATION	KMT2C (NM_170606) rearrangement: c.12774+141_c.13950dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4079	NA	0	13	10	14
P-0040472-T01-IM6	SOMATIC	GSK3B	GSK3B	8	3	49176750	119624484	IGR: 256Kb before UBE2V2(+)	Intron of GSK3B(-):117bp after exon 7	GRCh37	TRANSLOCATION	GSK3B (NM_002093) rearrangement: t(3;8)(q13.33;q11.21)(chr3:g.119624484::chr8:g.49176750)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	31	10	31
P-0040543-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1739094	1808696	Intron of TACC3(+):39bp after exon 9	Intron of FGFR3(+):35bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+35:FGFR3_c.1836+39:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69602	NA	0	95	10	103
P-0040571-T01-IM6	SOMATIC	Note	Note	4	4	186619246	187535301	5-UTR of SORBS2(-):110Kb before coding start	Intron of FAT1(-):43bp after exon 12	GRCh37	DELETION	Note: The FAT1 rearrangement is a deletion of exons 13 - 27.	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FAT1:SORBS2}	916055	NA	0	11	10	12
P-0040576-T01-IM6	SOMATIC	Note	Note	17	17	29665849	29751233	Intron of NF1(+):26bp after exon 46	Intron of RAB11FIP4(+):8Kb before exon 2	GRCh37	INVERSION	Note: The NF1 rearrangement is an inversion of exons 47 - 58. Functional significance is undetermined.	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	85384	NA	0	5	0	5
P-0040576-T01-IM6	SOMATIC	EML4	ALK	2	2	29447321	42507169	Intron of ALK(-):927bp before exon 20	Intron of EML4(+):820bp before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion (EML4 exon5 fused with ALK exon20) : c.668-821:EML4_c.3173-927:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13059848	NA	0	121	10	120
P-0040732-T02-IM6	SOMATIC	EML4	ALK	2	2	29446636	42526549	Intron of ALK(-):242bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1832:EML4_c.3173-242:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079913	NA	0	110	10	108
P-0040760-T01-IM6	SOMATIC	KIAA1549	BRAF	7	7	138550094	140481540	Intron of KIAA1549(-):3Kb after exon 15	Intron of BRAF(-):47bp before exon 11	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4929+2627:KIAA1549_c.1315-47:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1931446	NA	0	55	10	62
P-0040830-T01-IM6	SOMATIC	RB1	RB1	13	13	48881533	48882505	Exon 2 of RB1(+)	Intron of RB1(+):963bp after exon 2	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.255_c.264+963del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	972	NA	8	11	8	4
P-0040932-T01-IM6	SOMATIC	RECQL4	RECQL4	8	8	127851769	145741704	IGR: 174Kb before PCAT1(+)	Exon 5 of RECQL4(-)	GRCh37	DELETION	RECQL4 (NM_004260) rearrangement: c.799:RECQL4_chr8:g.127851769del	PRECISE		MANUAL_OK	3to5	-	17889935	NA	0	5	10	5
P-0040976-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55119445	55222311	Intron of EGFR(+):32Kb after exon 1	Intron of EGFR(+):466bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+32387_c.889+466del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	102866	NA	0	65	0	1426
P-0040976-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268955	55271481	Exon 25 of EGFR(+)	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3021_c.3271+1163del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2526	NA	0	3	0	3
P-0040990-T01-IM6	SOMATIC	CALR	CALR	19	19	10884675	13050493	Intron of DNM2(+):1Kb after exon 3	Intron of CALR(+):48bp after exon 3	GRCh37	INVERSION	CALR (NM_004343) rearrangement: c.397+48:CALR_chr19:g.10884675inv	PRECISE		MANUAL_OK	5to5	-	2165818	NA	0	3	6	3
P-0041052-T01-IM6	SOMATIC	GLI1	GLI1	12	12	45085414	57858946	Intron of NELL2(-):12Kb after exon 12	Exon 5 of GLI1(+)	GRCh37	DUPLICATION	GLI1 (NM_005269) rearrangement: c.442:GLI1_chr12:g.45085414dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	12773532	NA	0	386	10	479
P-0041210-T01-IM6	SOMATIC	MET	MET	7	7	116364828	116397683	Intron of MET(+):7Kb before exon 3	Intron of MET(+):8bp before exon 8	GRCh37	DELETION	MET (NM_000245) rearrangement: c.1201-6894_c.1966-9del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	32855	NA	0	8	5	8
P-0041256-T02-IM6	SOMATIC	CDK4	CDK4	12	5	58143197	23876068	Intron of CDK4(-):39bp after exon 6	IGR: 368Kb before PRDM9(+)	GRCh37	TRANSLOCATION	CDK4 (NM_000075) rearrangement: t(5;12)(p14.2;q14.1)(chr5:g.23876068::chr12:g.58143197)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	26	10	26
P-0041269-T01-IM6	SOMATIC	NF1	NF1	17	17	29553610	29562748	Exon 18 of NF1(+)	Exon 28 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.2159_c.3828dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9138	NA	0	53	10	80
P-0041269-T01-IM6	SOMATIC	RECQL4	LRRC24	8	8	145740319	145748966	Exon 9 of RECQL4(-)	Intron of LRRC24(-):173bp before exon 5	GRCh37	DUPLICATION	RECQL4 (NM_004260) - LRRC24 (NM_001024678) rearrangement: c.1620+1:RECQL4_c.608-173:LRRC24dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RECQL4:LRRC24}	8647	NA	0	100	10	112
P-0041330-T03-IM6	SOMATIC	SMAD4	SMAD4	18	5	48593484	73437986	Exon 10 of SMAD4(+)	IGR: 164Kb before LINC01335(-)	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) rearrangement: t(5;18)(q13.3;q21.2)(chr5:g.73437986::chr18:g.48593484)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	5	0	5
P-0041387-T01-IM6	SOMATIC	MYEF2	CALR	19	15	13054420	48457161	Exon 8 of CALR(+)	Intron of MYEF2(-):968bp after exon 5	GRCh37	TRANSLOCATION	MYEF2 (NM_016132) - CALR (NM_004343) rearrangement: t(15;19)(q21.1;p13.2)(chr15:g.48457161::chr19:g.13054420)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MYEF2:CALR}	0	NA	0	17	10	26
P-0041459-T01-IM6	SOMATIC	BLM	BLM	15	15	83638536	91292729	IGR: 16Kb before FAM103A1(+)	Exon 3 of BLM(+)	GRCh37	DELETION	BLM (NM_000057) rearrangement: c.231:BLM_chr15:g.83638536del	PRECISE		MANUAL_OK	3to5	-	7654193	NA	0	12	10	12
P-0041477-T02-IM7	SOMATIC	EPHA7	EPHA7	6	6	93965544	102844489	Intron of EPHA7(-):1bp after exon 13	IGR: 998Kb before GRIK2(+)	GRCh37	DELETION	EPHA7 (NM_004440) rearrangement: c.2382+2:EPHA7_chr6:g.102844489del	IMPPRECISE		MANUAL_OK	3to5	-	8878945	60	0	5	0	5
P-0041484-T01-IM6	SOMATIC	NTRK1	NTRK1	1	1	156627355	156843683	Intron of BCAN(+):111bp before exon 11	Exon 8 of NTRK1(+)	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.1109:NTRK1_chr1:g.156627355inv	PRECISE		MANUAL_OK	5to5	-	216328	NA	0	116	10	134
P-0041535-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77090275	77091689	Intron of PAK1(-):10bp after exon 4	Intron of PAK1(-):650bp before exon 3	GRCh37	DUPLICATION	PAK1 (NM_002576) rearrangement: c.191-650_c.439+11dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	1414	NA	0	36	10	37
P-0041624-T01-IM6	SOMATIC	GLG1	CDH1	16	16	68857391	74610119	Exon 13 of CDH1(+)	Intron of GLG1(-):30Kb after exon 1	GRCh37	INVERSION	GLG1 (NM_012201) - CDH1 (NM_004360) rearrangement: c.438+30436:GLG1_c.2026:CDH1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GLG1:CDH1}	5752728	NA	1	82	10	116
P-0041624-T01-IM6	SOMATIC	MDC1	PPP1R10	6	6	30573161	30672602	Intron of PPP1R10(-):290bp before exon 11	Exon 10 of MDC1(-)	GRCh37	DELETION	MDC1 (NM_014641) - PPP1R10 (NM_002714) rearrangement: c.4358:MDC1_c.854-290:PPP1R10del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MDC1:PPP1R10}	99441	NA	0	45	10	104
P-0041852-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	19	15302914	15825207	Exon 4 of NOTCH3(-)	IGR: 14Kb before OR10H2(+)	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.536:NOTCH3_chr19:g.15825207inv	PRECISE		MANUAL_OK	5to5	-	522293	NA	0	8	10	8
P-0041852-T02-IM6	SOMATIC	RAD51D	SPAG9	17	17	33446520	49051932	Intron of RAD51D(-):30bp after exon 1	Intron of SPAG9(-):199bp after exon 27	GRCh37	DUPLICATION	RAD51D (NM_133629) - SPAG9 (NM_001130528) rearrangement: c.82+31:RAD51D_c.3700+200:SPAG9dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RAD51D:SPAG9}	15605412	NA	0	25	0	25
P-0041875-T01-IM6	SOMATIC	CEBPA	CEBPA	19	19	33469519	33793047	3-UTR of RHPN2(-):1Kb after coding stop	Exon 1 of CEBPA(-)	GRCh37	INVERSION	CEBPA (NM_004364) rearrangement: c.274:CEBPA_chr19:g.33469519inv	PRECISE		MANUAL_OK	5to5	-	323528	NA	0	30	10	37
P-0042048-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25965334	26001062	Exon 12 of ASXL2(-)	Intron of ASXL2(-):7Kb before exon 5	GRCh37	INVERSION	ASXL2 (NM_018263) rearrangement: c.404-6653_c.3872inv	PRECISE		MANUAL_OK	3to3	-	35728	NA	0	14	10	13
P-0042048-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39888009	42873768	Intron of ERG(-):60Kb after exon 3	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.56-3652:TMPRSS2_c.39+59577:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2985759	NA	0	28	10	34
P-0042051-T01-IM6	SOMATIC	BRD4	NUTM1	19	15	15364244	34637975	Intron of BRD4(-):718bp after exon 11	Intron of NUTM1(+):2Kb after exon 1	GRCh37	TRANSLOCATION	BRD4 (NM_058243) - NUTM1 (NM_175741) fusion: t(15;19)(q14;p13.12)(chr15:g.34637975::chr19:g.15364244)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRD4:NUTM1}	0	NA	0	39	10	41
P-0042178-T01-IM6	SOMATIC	NOTCH4	NOTCH4	6	6	32170176	32174128	Exon 21 of NOTCH4(-)	Intron of NOTCH4(-):2Kb before exon 19	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.2866-1962_c.3432inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3952	NA	0	33	10	42
P-0042241-T01-IM6	SOMATIC	FGFR2	ZMYM4	10	1	123242889	35833702	Intron of FGFR2(-):322bp after exon 17	Intron of ZMYM4(+):2Kb before exon 6	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - ZMYM4 (NM_005095) fusion: t(1;10)(p34.3;q26.13)(chr1:g.35833702::chr10:g.123242889)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:ZMYM4}	0	NA	0	128	10	167
P-0042407-T01-IM6	SOMATIC	ARID5B	ARID5B	10	10	63644443	63662191	IGR: 17Kb before ARID5B(+)	Intron of ARID5B(+):19bp after exon 2	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.276+19:ARID5B_chr10:g.63644443dup	PRECISE		MANUAL_OK	5to3	-	17748	NA	0	33	10	36
P-0042407-T01-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	89337453	89347508	Intron of ANKRD11(-):136bp before exon 12	Exon 9 of ANKRD11(-)	GRCh37	DUPLICATION	ANKRD11 (NM_013275) rearrangement: c.5442_c.7714-136dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	10055	NA	0	40	10	43
P-0042407-T01-IM6	SOMATIC	RICTOR	RICTOR	X	5	129248290	38943061	IGR: 15Kb before AIFM1(-)	Exon 37 of RICTOR(-)	GRCh37	TRANSLOCATION	RICTOR (NM_152756) rearrangement: t(5;X)(p13.1;q26.1)(chr5:g.38943061::chrX:g.129248290)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	20	10	19
P-0042414-T01-IM6	SOMATIC	EP300	EP300	22	10	41533827	129928983	Intron of EP300(+):33bp after exon 8	IGR: 34Kb before MKI67(-)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(10;22)(q26.2;q13.2)(chr10:g.129928983::chr22:g.41533827)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	6	9	5
P-0042414-T01-IM6	SOMATIC	CARD11	CARD11	7	7	2966879	2974435	Intron of CARD11(-):454bp before exon 14	Intron of CARD11(-):172bp before exon 10	GRCh37	DUPLICATION	CARD11 (NM_032415) rearrangement: c.1342-172_c.1755-454dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	7556	NA	0	8	10	8
P-0042415-T02-IM6	SOMATIC	DIS3	DIS3	13	13	73355944	74194270	Exon 1 of DIS3(-)	IGR: 56Kb before LINC00392(+)	GRCh37	DELETION	DIS3 (NM_014953) rearrangement: c.27:DIS3_chr13:g.74194270del	PRECISE		MANUAL_OK	3to5	-	838326	NA	0	29	10	30
P-0042415-T02-IM6	SOMATIC	WHSC1L1	WHSC1L1	8	8	38178471	57297430	Intron of WHSC1L1(-):118bp after exon 8	3-UTR of SDR16C6P(-):6Kb after coding stop	GRCh37	INVERSION	WHSC1L1 (NM_023034) rearrangement: c.1809+119:WHSC1L1_chr8:g.57297430inv	PRECISE		MANUAL_OK	5to5	-	19118959	NA	0	6	7	6
P-0042594-T03-IM6	SOMATIC	TP53	TP53	17	17	7577760	7580405	Intron of TP53(-):152bp before exon 7	5-UTR of TP53(-):7Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.673-152:TP53_chr17:g.7580405del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2645	NA	0	5	10	7
P-0042596-T01-IM6	SOMATIC	DNMT3A	DNMT3A	2	2	10625811	25469336	IGR: 36Kb before LOC101929715(+)	Intron of DNMT3A(-):152bp after exon 10	GRCh37	INVERSION	DNMT3A (NM_022552) rearrangement: c.1279+153:DNMT3A_chr2:g.10625811inv	PRECISE		MANUAL_OK	5to5	-	14843525	NA	0	9	10	9
P-0042596-T01-IM6	SOMATIC	SQSTM1	ALK	5	2	179254603	29446511	Intron of SQSTM1(+):2Kb after exon 6	Intron of ALK(-):117bp before exon 20	GRCh37	TRANSLOCATION	SQSTM1 (NM_003900) - ALK (NM_004304) fusion: t(2;5)(p23.2;q35.3)(chr2:g.29446511::chr5:g.179254603)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SQSTM1:ALK}	0	NA	0	28	10	30
P-0042620-T01-IM6	SOMATIC	WIPI2	CALR	19	7	13049530	5268169	Exon 1 of CALR(+)	Intron of WIPI2(+):327bp after exon 11	GRCh37	TRANSLOCATION	WIPI2 (NM_016003) - CALR (NM_004343) rearrangement: t(7;19)(p22.1;p13.2)(chr7:g.5268169::chr19:g.13049530)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WIPI2:CALR}	0	NA	0	11	10	11
P-0042627-T01-IM6	SOMATIC	ARID1A	ARID1A	1	1	27089562	27090695	Exon 8 of ARID1A(+)	Intron of ARID1A(+):919bp after exon 8	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2518_c.2732+919del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1133	NA	0	42	10	44
P-0042627-T01-IM6	SOMATIC	RAD51D	RAD51D	17	17	6816349	33446455	IGR: 19Kb before ALOX12P2(+)	Intron of RAD51D(-):95bp after exon 1	GRCh37	DELETION	RAD51D (NM_133629) rearrangement: c.82+96:RAD51D_chr17:g.6816349del	PRECISE		MANUAL_OK	3to5	-	26630106	NA	0	18	10	18
P-0042664-T01-IM6	SOMATIC	MAP3K13	MAP3K13	3	3	185181350	185185970	Exon 8 of MAP3K13(+)	Intron of MAP3K13(+):1Kb after exon 10	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.1291_c.1643+1219del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4620	NA	0	4	7	4
P-0042755-T01-IM6	SOMATIC	ERBB3	ERBB3	12	8	56494888	56386721	Exon 27 of ERBB3(+)	Intron of XKR4(+):49Kb before exon 3	GRCh37	TRANSLOCATION	ERBB3 (NM_001982) rearrangement: t(8;12)(q12.1;q13.2)(chr8:g.56386721::chr12:g.56494888)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	24	10	24
P-0043000-T02-IM6	SOMATIC	MED12	MED12	X	13	70356437	53230412	Exon 37 of MED12(+)	Intron of SUGT1(+):1Kb before exon 3	GRCh37	TRANSLOCATION	MED12 (NM_005120) rearrangement: t(13;X)(q14.3;q13.1)(chr13:g.53230412::chrX:g.70356437)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	8	10	11
P-0043002-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55175813	55222163	Intron of EGFR(+):34Kb before exon 2	Intron of EGFR(+):318bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-34166_c.889+318del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	46350	NA	0	86	0	461
P-0043002-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268891	55271647	Exon 25 of EGFR(+)	Intron of EGFR(+):1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2957_c.3272-1302del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2756	NA	0	16	10	16
P-0043007-T01-IM6	SOMATIC	KIF5B	RET	10	10	32306812	43610813	Intron of KIF5B(-):167bp after exon 23	Intron of RET(+):629bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2544+168:KIF5B_c.2136+629:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11304001	NA	0	37	10	46
P-0043153-T01-IM6	SOMATIC	STK11	STK11	19	19	1202211	1218398	IGR: 4Kb before STK11(+)	Intron of STK11(+):17bp before exon 2	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-18:STK11_chr19:g.1202211del	PRECISE		MANUAL_OK	3to5	-	16187	NA	0	57	10	60
P-0043250-T01-IM6	SOMATIC	STK19	STK19	6	6	31948330	31981147	Intron of STK19(+):5bp after exon 6	Promoter of STK19(+):370bp from tx start	GRCh37	DELETION	STK19 (NM_004197) rearrangement: c.901+5:STK19_chr6:g.31981147del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	32817	NA	68	38	10	80
P-0043277-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77051789	77059074	Exon 11 of PAK1(-)	Intron of PAK1(-):1Kb after exon 9	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.885+1210_c.1018del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7285	NA	0	3	8	3
P-0043277-T01-IM6	SOMATIC	KEAP1	KEAP1	19	19	10610709	10618964	Exon 2 of KEAP1(-)	IGR: 4Kb before S1PR5(-)	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1:KEAP1_chr19:g.10618964del	PRECISE		MANUAL_OK	3to5	-	8255	NA	0	22	10	26
P-0043277-T01-IM6	SOMATIC	POLD1	POLD1	19	19	50186003	50902192	Intron of PRMT1(+):487bp after exon 4	Exon 2 of POLD1(+)	GRCh37	INVERSION	POLD1 (NM_002691) rearrangement: c.84:POLD1_chr19:g.50186003inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	716189	NA	0	49	10	49
P-0043314-T02-IM6	SOMATIC	SUFU	SUFU	10	10	104351422	104353690	Intron of SUFU(+):916bp before exon 4	Intron of SUFU(+):59bp before exon 6	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.455-917_c.684-60del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2268	NA	0	3	7	3
P-0043314-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55140340	55223125	Intron of EGFR(+):53Kb after exon 1	Intron of EGFR(+):397bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+53282_c.890-398del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	82785	NA	0	10	10	10
P-0043367-T01-IM6	SOMATIC	CDKN2A	CDKN2A	19	9	53210322	21968953	Intron of ZNF611(-):205bp before exon 7	Intron of CDKN2A(-):712bp before exon 3	GRCh37	TRANSLOCATION	CDKN2A (NM_000077) rearrangement: t(9;19)(p21.3;q13.41)(chr9:g.21968953::chr19:g.53210322)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	7	10	7
P-0043374-T01-IM6	SOMATIC	ESR1	ESR1	6	6	152373899	152382188	Intron of ESR1(+):8Kb before exon 7	Exon 7 of ESR1(+)	GRCh37	INVERSION	ESR1 (NM_001122740) rearrangement: c.1236-8227_c.1298inv	PRECISE		MANUAL_OK	5to5	-	8289	NA	0	55	10	62
P-0043502-T02-IM6	SOMATIC	MED12	MED12	X	X	68183411	70349012	IGR: 135Kb before EFNB1(+)	Exon 25 of MED12(+)	GRCh37	INVERSION	MED12 (NM_005120) rearrangement: c.3524:MED12_chrX:g.68183411inv	IMPPRECISE		MANUAL_OK	5to5	-	2165601	NA	0	6	0	7
P-0043672-T02-IM6	SOMATIC	LRCH3	TP63	3	3	189607218	197547593	Exon 12 of TP63(+)	Intron of LRCH3(+):292bp after exon 4	GRCh37	DUPLICATION	LRCH3 (NM_032773) - TP63 (NM_003722) rearrangement: c.640+292:LRCH3_c.1597:TP63dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LRCH3:TP63}	7940375	NA	0	28	10	33
P-0043699-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39850536	42871180	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-1064:TMPRSS2_c.18+19751:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3020644	NA	0	21	10	22
P-0043699-T01-IM6	SOMATIC	MITF	MITF	3	3	70008670	188085953	Intron of MITF(+):99bp after exon 9	5-UTR of LPP(+):38Kb before coding start	GRCh37	INVERSION	MITF (NM_198159) rearrangement: c.1161+99:MITF_chr3:g.188085953inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	118077283	NA	0	4	10	4
P-0043726-T01-IM6	SOMATIC	NCOR1	NCOR1	17	17	4883224	15971518	Exon 8 of CAMTA2(-)	Intron of NCOR1(-):83bp before exon 32	GRCh37	INVERSION	NCOR1 (NM_006311) rearrangement: c.4514-83:NCOR1_chr17:g.4883224inv	PRECISE		MANUAL_OK	3to3	-	11088294	NA	0	21	10	21
P-0043854-T01-IM6	SOMATIC	KIF5B	MET	10	7	32304904	116412098	Intron of KIF5B(-):317bp before exon 25	Intron of MET(+):55bp after exon 14	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - MET (NM_000245) fusion: t(7;10)(q31.2;p11.22)(chr7:g.116412098::chr10:g.32304904)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:MET}	0	NA	0	13	10	13
P-0043869-T02-IM6	SOMATIC	EP300	EP300	22	22	41558846	41560705	Intron of EP300(+):63bp after exon 21	Intron of EP300(+):571bp after exon 22	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3728+63_c.3806+571del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1859	NA	0	9	10	34
P-0044017-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21958116	21974366	IGR: 9Kb before CDKN2A-AS1(+)	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3159:CDKN2A_chr9:g.21958116del	PRECISE		MANUAL_OK	3to5	-	16250	NA	0	24	10	26
P-0044108-T02-IM6	SOMATIC	STK11	STK11	19	19	1142410	1219399	Intron of SBNO2(-):5Kb after exon 4	Exon 3 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.451:STK11_chr19:g.1142410del	PRECISE		MANUAL_OK	3to5	-	76989	NA	0	3	10	4
P-0044140-T01-IM6	SOMATIC	TERT	TERT	5	3	1295406	134091986	Promoter of TERT(-):42Kb from tx start	Intron of AMOTL2(-):2Kb before exon 2	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(3;5)(q22.2;p15.33)(chr3:g.3:134091986::chr5:g.1295406)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	31	0	31
P-0044165-T01-IM6	SOMATIC	EGFR	EGFR	22	7	36424688	55222714	Promoter of RBFOX2(-):290Kb from tx start	Intron of EGFR(+):808bp before exon 8	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(7;22)(p11.2;q12.3)(chr7:g.55222714::chr22:g.36424688)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {EGFR:RBFOX2}	0	NA	0	28	0	27
P-0044165-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55202496	55222236	Intron of EGFR(+):7Kb before exon 2	Intron of EGFR(+):391bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-7483_c.889+391del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	19740	NA	0	38	0	586
P-0044207-T01-IM6	SOMATIC	FGFR4	FGFR4	5	5	51357750	176524667	IGR: 679Kb before ISL1(+)	Exon 18 of FGFR4(+)	GRCh37	INVERSION	FGFR4 (NM_213647) rearrangement: c.2399:FGFR4_chr5:g.51357750inv	PRECISE		MANUAL_OK	3to3	-	125166917	NA	0	9	10	9
P-0044328-T01-IM6	SOMATIC	KLF4	KLF4	9	9	108890966	110249374	IGR: 434Kb before TMEM38B(+)	Exon 4 of KLF4(-)	GRCh37	INVERSION	KLF4 (NM_004235) rearrangement: c.1199:KLF4_chr9:g.108890966inv	PRECISE		MANUAL_OK	5to5	-	1358408	NA	0	6	10	6
P-0044354-T01-IM6	SOMATIC	STK11	STK11	19	19	1216444	1218470	Intron of STK11(+):2Kb before exon 2	Exon 2 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-1972_c.345del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2026	NA	0	7	10	10
P-0044354-T01-IM6	SOMATIC	FAT1	NEK1	4	4	170422780	187524303	Intron of NEK1(-):5Kb after exon 21	Intron of FAT1(-):26bp after exon 19	GRCh37	DELETION	FAT1 (NM_005245) - NEK1 (NM_001199397) rearrangement: c.11350+27:FAT1_c.2007+5408:NEK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FAT1:NEK1}	17101523	NA	0	24	10	24
P-0044518-T01-IM6	SOMATIC	COL15A1	TGFBR1	9	9	101752653	101900162	Intron of COL15A1(+):1Kb after exon 5	Exon 4 of TGFBR1(+)	GRCh37	DELETION	COL15A1 (NM_001855) - TGFBR1 (NM_004612) rearrangement: c.804+1113:COL15A1_c.596:TGFBR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {COL15A1:TGFBR1}	147509	NA	0	27	10	27
P-0044885-T01-IM6	SOMATIC	TERT	TERT	12	5	58874633	1295424	IGR: 85Kb before LOC101927653(-)	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT(NM_198253) rearrangement: t(5;12)(p15.33;q14.1)(chr5:g.1295424::chr12:g.58874633)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	11	10	11
P-0044906-T01-IM6	SOMATIC	PARP1	PTPRC	1	1	198616466	226566955	Intron of PTPRC(+):8Kb after exon 2	Exon 12 of PARP1(-)	GRCh37	INVERSION	PARP1 (NM_001618) - PTPRC (NM_002838) rearrangement: c.1633:PARP1_c.73+7995:PTPRCinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PARP1:PTPRC}	27950489	NA	0	3	10	4
P-0045001-T01-IM6	SOMATIC	TP53	TP53	17	17	7569583	7633992	Promoter of TP53(-):2Kb from tx start	Intron of DNAH2(+):2Kb before exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement : c.*3344_c.400-2413:DNAH2del	PRECISE		MANUAL_OK	3to5	-	64409	NA	0	13	10	14
P-0045005-T01-IM6	SOMATIC	PTPRT	PTPRT	20	6	40727119	14960811	Exon 28 of PTPRT(-)	IGR: 285Kb before JARID2(+)	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(6;20)(p23;q12)(chr6:g.14960811::chr20:g.40727119)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	16	10	16
P-0046454-T01-IM6	SOMATIC	BABAM1	BABAM1	19	19	17385914	17387432	Intron of BABAM1(+):695bp before exon 6	Exon 7 of BABAM1(+)	GRCh37	INVERSION	BABAM1 (NM_001033549) rearrangement: c.545-696_c.698inv	PRECISE		MANUAL_OK	5to5	-	1518	NA	0	22	10	23
P-0050938-T01-IM6	SOMATIC	NFE2L2	NFE2L2	2	2	178098849	178113475	Exon 2 of NFE2L2(-)	Intron of NFE2L2(-):14Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-14476_c.196del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	14626	NA	0	40	10	41
P-0050938-T01-IM6	SOMATIC	KMT2C	KMT2C	7	7	151836035	151836898	Intron of KMT2C(-):46bp before exon 58	Intron of KMT2C(-):22bp before exon 56	GRCh37	DELETION	KMT2C (NM_170606) rearrangement: c.14344-22_c.14535-46del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	863	NA	0	27	10	27
P-0053948-T01-IM6	SOMATIC	KMT2D	KMT2D	12	1	49444841	121485193	Exon 10 of KMT2D(-)	IGR: 224Kb before EMBP1(+)	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(1;12)(p11.2;q13.12)(chr1:g.121485193::chr12:g.49444841)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	32	10	37
P-0057197-T02-IM7	SOMATIC	FYN	FYN	12	6	13206754	112029271	Intron of KIAA1467(+):2Kb before exon 2	Intron of FYN(-):48bp before exon 3	GRCh37	TRANSLOCATION	FYN (NM_153047) rearrangement: t(6;12)(q21;p13.1)(chr6:g.112029271::chr12:g.13206754)	PRECISE		MANUAL_OK	5to3	-	0	37	0	40	10	63
P-0057197-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55186969	55223112	Intron of EGFR(+):23Kb before exon 2	Intron of EGFR(+):410bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-23010_c.890-411del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	36143	60	0	130	0	535
P-0058610-T02-IM7	SOMATIC	VTCN1	VTCN1	19	1	42031377	117699276	IGR: 10Kb before LINC01480(+)	Exon 3 of VTCN1(-)	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) rearrangement: t(1;19)(p13.1;q13.2)(chr1:g.117699276::chr19:g.42031377)	PRECISE		MANUAL_OK	5to5	-	0	60	0	76	10	111
P-0058610-T02-IM7	SOMATIC	ASXL2	ASXL2	2	2	25971827	26100923	Intron of ASXL2(-):737bp after exon 11	Intron of ASXL2(-):111bp after exon 1	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.57+112_c.1860+738del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 10 exons : in frame	129096	60	0	8	0	8
P-0059275-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57487481	57493167	Intron of NAB2(+):100bp after exon 6	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+100:NAB2_c.1801:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5686	NA	0	76	10	76
P-0059466-T02-IM7	SOMATIC	HGF	HGF	7	7	81372758	85873551	Exon 7 of HGF(-)	IGR: 400Kb before GRM3(+)	GRCh37	INVERSION	HGF (NM_000601) rearrangement: c.776:HGF_chr7:g.85873551inv	PRECISE		MANUAL_OK	5to5	-	4500793	60	0	15	10	15
P-0059527-T02-IM7	SOMATIC	RRAS	RRAS	19	19	48281064	50139027	Promoter of SEPW1(+):777bp from tx start	Exon 5 of RRAS(-)	GRCh37	INVERSION	RRAS (NM_006270) rearrangement: c.536:RRAS_chr19:g.48281064inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SEPW1:RRAS}	1857963	49	0	6	10	6
P-0061305-T03-IM7	SOMATIC	CUL3	CUL3	2	2	225357090	225379509	Intron of CUL3(-):3Kb after exon 13	Intron of CUL3(-):20bp before exon 4	GRCh37	DUPLICATION	CUL3 (NM_003590) rearrangement: c.379-20_c.1842+3459dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 10 exons : in frame	22419	60	0	6	0	6
P-0061305-T03-IM7	SOMATIC	PTPRD	PTPRD	9	9	7700542	8338993	IGR: 96Kb before TMEM261(-)	Exon 43 of PTPRD(-)	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.5308:PTPRD_chr9:g.7700542del	PRECISE		MANUAL_OK	3to5	-	638451	37	0	13	10	13
P-0061753-T01-IM7	SOMATIC	PAX8	PAX8	2	1	113984710	152428651	Intron of PAX8(-):21bp after exon 10	IGR: 47Kb before CRNN(-)	GRCh37	TRANSLOCATION	PAX8 (NM_003466) rearrangement: t(1;2)(q21.3;q13)(chr1:g.152428651::chr2:g.113984710)	PRECISE		MANUAL_OK	3to3	-	0	60	0	24	10	24
P-0061753-T01-IM7	SOMATIC	STAB1	BAP1	3	3	52438479	52557354	Exon 12 of BAP1(-)	Exon 64 of STAB1(+)	GRCh37	INVERSION	STAB1 (NM_015136) - BAP1 (NM_004656) rearrangement: c.7137:STAB1_c.1240:BAP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {STAB1:BAP1}	118875	60	0	14	10	14
P-0062470-T01-IM7	SOMATIC	CDH8	TSC2	16	16	2104197	61692673	Intron of TSC2(+):99bp before exon 5	Intron of CDH8(-):3Kb before exon 11	GRCh37	INVERSION	CDH8 (NM_001796) - TSC2 (NM_000548) rearrangement: c.1655-3048:CDH8_c.337-100:TSC2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CDH8:TSC2}	59588476	60	0	23	0	31
P-0062470-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3824888	72276506	Intron of CREBBP(-):194bp before exon 12	IGR: 41Kb before LINC01572(-)	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.2159-194:CREBBP_chr16:g.72276506inv	PRECISE		MANUAL_OK	3to3	-	68451618	60	0	10	8	10
P-0062677-T01-IM7	SOMATIC	WDR74	SNHG1	11	11	62606925	62620924	Intron of WDR74(-):25bp before exon 3	3-UTR of SNHG1(-):2Kb after coding stop	GRCh37	DELETION	WDR74 (NM_018093) - SNHG1 (NR_003098.1) rearrangement: c.65-25WDR74_chr11:g.62620924SNHG1del	PRECISE		MANUAL_OK	3to5	-	13999	60	0	69	10	71
P-0062679-T01-IM7	SOMATIC	CREBBP	CREBBP	16	10	3843288	125169285	Intron of CREBBP(-):98bp after exon 4	IGR: 256Kb before BUB3(+)	GRCh37	TRANSLOCATION	CREBBP (NM_004380) rearrangement: t(10;16)(q26.13;p13.3)(chr10:g.125169285::chr16:g.3843288)	PRECISE		MANUAL_OK	5to5	-	0	60	0	43	10	46
P-0062679-T01-IM7	SOMATIC	SLFN11	SLFN11	17	17	33687479	33706689	Intron of SLFN11(-):89bp before exon 4	IGR: 29Kb before SLFN11(-)	GRCh37	DELETION	SLFN11 (NM_001104589) rearrangement: g.33706689_c.1070-89del	PRECISE		MANUAL_OK	3to5	-	19210	26	0	8	9	7
P-0062680-T01-IM7	SOMATIC	FOXA1	FOXA1	14	7	38059292	14087158	3-UTR of FOXA1(-):1Kb after coding stop	IGR: 98Kb before DGKB(-)	GRCh37	TRANSLOCATION	FOXA1(NM_004496) rearrangement: t(7;14)(p21.2;q21.1)(chr7:g.14087158::chr14:g.38059292)	PRECISE		MANUAL_OK	5to5	-	0	33	0	7	10	14
P-0062681-T01-IM7	SOMATIC	MST1R	MST1R	3	3	49929254	50174923	Exon 15 of MST1R(-)	IGR: 18Kb before SEMA3F(+)	GRCh37	DELETION	MST1R (NM_002447) rearrangement: c.3289:MST1R_chr3:g.50174923del	IMPPRECISE		MANUAL_OK	3to5	-	245669	54	0	15	0	18
P-0062705-T01-IM7	SOMATIC	CBFB	CBFB	16	16	67063595	67073417	Intron of CBFB(+):34bp before exon 2	Intron of CBFB(+):3Kb after exon 3	GRCh37	DUPLICATION	CBFB (NM_022845) rearrangement: c.79-35_c.282+2759dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	9822	60	0	32	0	33
P-0062705-T01-IM7	SOMATIC	PIK3R2	PIK3R2	19	12	18277868	6722940	Intron of PIK3R2(+):71bp before exon 13	IGR: 5Kb before LPAR5(-)	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(12;19)(p13.31;p13.11)(chr12:g.6722940::chr19:g.18277868)	PRECISE		MANUAL_OK	5to3	-	0	60	0	17	10	17
P-0062714-T01-IM7	SOMATIC	TERT	TERT	5	3	1295530	191055030	Promoter of TERT(-):42Kb from tx start	Intron of CCDC50(+):8Kb after exon 1	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(3;5)(q28;p15.33)(chr3:g.191055030::chr5:g.1295530C>T)	PRECISE		MANUAL_OK	3to5	-	0	60	0	57	10	57
P-0062715-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55186821	55222131	Intron of EGFR(+):23Kb before exon 2	Intron of EGFR(+):286bp after exon 7	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-23158_c.889+286inv	IMPPRECISE		MANUAL_OK	5to5	-	35310	60	0	13	0	13
P-0062716-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2191766	2227958	Intron of DOT1L(+):527bp after exon 5	Intron of DOT1L(+):832bp after exon 27	GRCh37	INVERSION	DOT1L (NM_032482) rearrangement: c.493+527_c.4606+832inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	36192	60	0	34	0	34
P-0062731-T01-IM7	SOMATIC	TERT	TERT	5	5	1295733	2992991	Promoter of TERT(-):42Kb from tx start	IGR: 185Kb before LINC01377(+)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-847:TERT_g.2992991del	PRECISE		MANUAL_OK	3to5	-	1697258	60	0	129	10	148
P-0062732-T01-IM7	SOMATIC	CCNE1	CCNE1	19	19	30314600	30316033	Exon 12 of CCNE1(+)	Promoter of CCNE1(+):13Kb from tx start	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.1149:CCNE1_chr19:g.30316033inv	PRECISE		MANUAL_OK	5to5	-	1433	35	0	75	10	85
P-0062745-T01-IM7	SOMATIC	PARP1	PARP1	1	1	222040450	226573214	IGR: 39Kb before LOC101929771(-)	Exon 7 of PARP1(-)	GRCh37	DELETION	PARP1 (NM_001618) rearrangement: c.1002:PARP1_chr1:g.222040450del	PRECISE		MANUAL_OK	3to5	-	4532764	60	0	6	8	6
P-0062765-T01-IM7	SOMATIC	PPAPDC1A	TOP1	20	10	39750239	122333216	Intron of TOP1(+):96bp before exon 19	Intron of PPAPDC1A(+):1Kb before exon 6	GRCh37	TRANSLOCATION	PPAPDC1A (NM_001030059) - TOP1 (NM_003286) rearrangement: t(10;20)(q26.12;q12)(chr10:g.122333216::chr20:g.39750239)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PPAPDC1A:TOP1}	0	60	0	9	10	9
P-0062785-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29688193	32416046	Intron of EWSR1(+):35bp after exon 11	Intron of WT1(-):2Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416046::chr22:g.29688193)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	47	10	46
P-0000025-T03-IM6	SOMATIC	TBX4	PPM1D	17	17	58711131	59540955	Intron of PPM1D(+):82bp before exon 3	Intron of TBX4(+):2Kb before exon 3	GRCh37	DUPLICATION	TBX4 (NM_018488) - PPM1D (NM_003620) rearrangement: c.282-2225:TBX4_c.702-83:PPM1Ddup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TBX4:PPM1D}	829824	NA	0	22	0	24
P-0000025-T03-IM6	SOMATIC	YPEL1	MAPK1	22	22	22063813	22160366	Intron of YPEL1(-):1Kb after exon 2	Intron of MAPK1(-):38bp before exon 3	GRCh37	DUPLICATION	YPEL1 (NM_013313) - MAPK1 (NM_002745) rearrangement: c.117+1104:YPEL1_c.303-38:MAPK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {YPEL1:MAPK1}	96553	NA	0	7	10	9
P-0000025-T03-IM6	SOMATIC	DGKQ	FGFR3	4	4	963448	1795701	Intron of DGKQ(-):750bp before exon 3	Exon 2 of FGFR3(+)	GRCh37	INVERSION	DGKQ (NM_001347) - FGFR3 (NM_000142) rearrangement: c.352-750:DGKQ_c.40:FGFR3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DGKQ:FGFR3}	832253	NA	0	6	10	7
P-0003408-T02-IM6	SOMATIC	Note	Note	22	7	41558713	157390026	Intron of EP300(+):13bp before exon 21	Intron of PTPRN2(-):2Kb before exon 16	GRCh37	TRANSLOCATION	Note: The EP300 (NM_001429) - PTPRN2 (NM_002847) rearrangement event is a translocation which results in the fusion of EP300 exons 1-20 and PTPRN2 exons 17-23. Its functional significance is undetermined.	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EP300:PTPRN2}	0	NA	0	6	10	6
P-0006713-T01-IM5	SOMATIC	ERRFI1	ERRFI1	17	1	7619057	8085068	IGR: 4Kb before DNAH2(+)	5-UTR of ERRFI1(-): 9Kb before coding start	GRCh37	TRANSLOCATION	ERRFI1 (NM_018948) rearrangement: t(1;17)(p36.23;p13.1)(chr1:g.8085068::chr17:g.7619057)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	94	32	90
P-0007966-T02-IM6	SOMATIC	MAP2K1	MAP2K1	15	15	66679794	67250579	Intron of MAP2K1(+):29bp after exon 1	IGR: 108Kb before SMAD3(+)	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement : c.80+29:MAP2K1_chr15:g.67250578del	PRECISE		MANUAL_OK	3to5	-	570785	NA	0	27	10	27
P-0012836-T02-IM6	SOMATIC	TBX3	TBX3	12	12	115111461	115119062	Intron of TBX3(-):508bp after exon 7	Intron of TBX3(-):111bp before exon 2	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.390-111_c.1770+509inv	PRECISE		MANUAL_OK	3to3	-	7601	NA	0	7	10	7
P-0013299-T02-IM6	SOMATIC	EML4	ALK	2	2	29447038	42493173	Intron of ALK(-):644bp before exon 20	Intron of EML4(+):1Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) -ALK (NM_004304) Fusion(EML4 exon5 fused with ALK exon20) : c.667+1302:EML4_c.3173-644:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046135	NA	0	94	10	93
P-0013299-T02-IM6	SOMATIC	TSC1	COL5A1	9	9	135804243	137690052	Exon 3 of TSC1(-)	Intron of COL5A1(+):201bp before exon 37	GRCh37	DELETION	TSC1 (NM_000368) - COL5A1 (NM_000093) rearrangement: c.17:TSC1_c.2899-203:COL5A1del	PRECISE		MANUAL_OK	3to5	-	1885809	NA	0	72	10	75
P-0016350-T02-IM6	SOMATIC	TOP1	TOP1	20	20	311625	39750673	Promoter of SOX12(+):5Kb from tx start	Exon 20 of TOP1(+)	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: chr20:g.311625_c.2073:TOP1inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	39439048	NA	0	24	10	24
P-0017310-T02-IM6	SOMATIC	ZNF598	TSC2	16	16	2050510	2108734	Intron of ZNF598(-):28bp before exon 10	Intron of TSC2(+):13bp before exon 10	GRCh37	INVERSION	ZNF598 (NM_178167) - TSC2 (NM_000548) rearrangement: c.1204-28:ZNF598_c.849-14:TSC2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {ZNF598:TSC2}	58224	NA	0	42	10	49
P-0021785-T01-IM6	SOMATIC	ERBB3	ZCRB1	12	12	42710357	56494075	Intron of ZCRB1(-):784bp after exon 5	Intron of ERBB3(+):46bp after exon 26	GRCh37	INVERSION	ERBB3 (NM_001982) - ZCRB1 (NM_033114) Rearrangement : c.3201+46:ERBB3_c.333+785:ZCRB1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ERBB3:ZCRB1}	13783718	NA	0	11	10	11
P-0021788-T01-IM6	SOMATIC	VPS26A	FGFR2	10	10	70891619	123242226	Intron of VPS26A(+):1Kb before exon 2	Intron of FGFR2(-):985bp after exon 17	GRCh37	INVERSION	VPS26A (NM_004896) - FGFR2 (NM_000141) Rearrangement : c.4-1035:VPS26A_c.2301+986:FGFR2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {VPS26A:FGFR2}	52350607	NA	0	88	10	88
P-0021841-T01-IM6	SOMATIC	NOTCH3	NOTCH3	19	1	15276321	41208968	Exon 31 of NOTCH3(-)	Intron of NFYC(+):4Kb before exon 3	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) Rearrangement : t(1,19)(p34.2,p13.12)(chr1:g.41208968::chr19:g.15276321)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	56	10	57
P-0022184-T01-IM6	SOMATIC	EML4	ALK	2	2	29447035	42524042	Intron of ALK(-):641bp before exon 20	Intron of EML4(+):1Kb after exon 12	GRCh37	INVERSION	EML4 (NM_001145076) - ALK (NM_004304) fusion (EML4 exons 1-12 fused with ALK exons 20-29): c.1315+1386:EML4_c.3173-641:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077007	NA	0	51	10	49
P-0022184-T01-IM6	SOMATIC	APC	APC	5	5	112173820	112177483	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.2529_c.6192del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3663	NA	0	6	0	6
P-0022198-T01-IM6	SOMATIC	KMT2A	KMT2A	11	11	114253339	118342426	Promoter of LOC101928940(-):22Kb from tx start	Exon 3 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: chr11:g.114253339_c.552inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LOC101928940:KMT2A}	4089087	NA	0	14	10	16
P-0022198-T02-IM6	SOMATIC	KMT2A	KMT2A	11	11	114253339	118342426	Promoter of LOC101928940(-):22Kb from tx start	Exon 3 of KMT2A(+)	GRCh37	INVERSION	KMT2A (NM_001197104) rearrangement: chr11:g.114253339_c.552inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LOC101928940:KMT2A}	4089087	NA	0	20	10	23
P-0023321-T03-IM6	SOMATIC	POLE	GOLGA3	12	12	133226395	133384219	Exon 30 of POLE(-)	Intron of GOLGA3(-):257bp after exon 5	GRCh37	DUPLICATION	POLE (NM_006231) - GOLGA3 (NM_005895) rearrangement: c.3663:POLE_c.1178+258:GOLGA3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {POLE:GOLGA3}	157824	NA	0	31	10	31
P-0024196-T01-IM6	SOMATIC	CREBBP	SLC12A4	16	16	3807982	67987892	Exon 18 of CREBBP(-)	Intron of SLC12A4(-):653bp after exon 6	GRCh37	DUPLICATION	CREBBP (NM_004380) - SLC12A4 (NM_001145962) rearrangement: c.3437:CREBBP_681+654:SLC12A4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CREBBP:SLC12A4}	64179910	NA	0	27	10	28
P-0024572-T01-IM6	SOMATIC	CD74	ROS1	6	5	117649758	149783583	Intron of ROS1(-):733bp after exon 32	Intron of CD74(-):659bp after exon 6	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion( CD74 exons 1-6 fused to ROS1 exons 33-43): t(5;6)(q32;q22.1)(chr5:g.149783583::chr6:g.117649758)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CD74:ROS1}	0	NA	0	142	10	149
P-0024801-T03-IM7	SOMATIC	FGFR3	FGFR3	4	1	1801306	192663302	Intron of FGFR3(+):56bp after exon 3	IGR: 58Kb before RGS13(+)	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(1;4)(q31.2;p16.3)(chr1:g.192663302::chr4:g.1801306)	PRECISE		MANUAL_OK	5to3	-	0	35	0	26	10	30
P-0025917-T02-IM6	SOMATIC	STK11	STK11	19	19	1221607	1222950	Intron of STK11(+):268bp after exon 6	Intron of STK11(+):33bp before exon 8	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.862+268_c.921-34del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1343	NA	0	25	10	25
P-0026906-T02-IM6	SOMATIC	EGFL7	EGFL7	9	9	139565724	139566787	Intron of EGFL7(+):258bp after exon 7	3-UTR of EGFL7(+):4Kb after coding stop	GRCh37	INVERSION	EGFL7 (NM_201446) rearrangement: c.636+258_c.*49inv	PRECISE		MANUAL_OK	3to3	-	1063	NA	0	2	10	1
P-0028072-T01-IM6	SOMATIC	PREX2	PREX2	8	8	68872297	69009311	Intron of PREX2(+):8Kb after exon 1	Exon 22 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.141+7527_c.2428dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	137014	NA	0	14	10	16
P-0028777-T02-IM6	SOMATIC	ARID2	ARID2	12	12	46231811	46245063	Intron of ARID2(+):321bp after exon 10	Exon 15 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.1330+321_c.3157del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13252	NA	0	45	10	47
P-0029140-T03-IM6	SOMATIC	BRCA2	BRCA2	13	13	32906067	32906636	Intron of BRCA2(+):341bp before exon 10	Exon 10 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.794-342_c.1021del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	569	NA	0	118	0	131
P-0029514-T01-IM6	SOMATIC	RIT1	GON4L	1	1	155732751	155874155	Intron of GON4L(-):351bp after exon 22	Exon 5 of RIT1(-)	GRCh37	DELETION	RIT1 (NM_006912) - GON4L (NM_001037533) rearrangement: c.376:RIT1_c.4726+352:GON4Ldel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RIT1:GON4L}	141404	NA	0	46	0	73
P-0031449-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39879996	42876464	Intron of ERG(-):62Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) Fusion (fTMPRSS2 exon 1 with ERG exons 4-10): c.55+3413:TMPRSS2_c.c.40-62452:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996468	NA	0	6	10	6
P-0035603-T02-IM6	SOMATIC	KMT2D	KMT2D	12	11	49426176	63242646	Exon 39 of KMT2D(-)	Intron of HRASLS5(-):7Kb before exon 4	GRCh37	TRANSLOCATION	KMT2D (NM_003482) rearrangement: t(11;12)(q12.3;q13.12)(chr11:g.63285288::chr12:g.49425688)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KMT2D:HRASLS5}	0	NA	0	71	10	72
P-0035896-T01-IM6	SOMATIC	PPP2R1A	PPP2R1A	19	19	52723487	52726779	Exon 11 of PPP2R1A(+)	Intron of PPP2R1A(+):1Kb after exon 13	GRCh37	DELETION	PPP2R1A (NM_014225) rearrangement: c.1348_c.1661+1285del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3292	NA	0	28	10	29
P-0036376-T01-IM6	SOMATIC	EWSR1	WT1	22	11	29684054	32415174	Intron of EWSR1(+):540bp before exon 9	Intron of WT1(-):873bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415174::chr22:g.29684054)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	0	6	0	6
P-0036932-T01-IM6	SOMATIC	CDKN1B	CDKN1B	12	12	12871306	14676500	Intron of CDKN1B(+):58bp after exon 1	Intron of PLBD1(-):12Kb before exon 7	GRCh37	DELETION	CDKN1B (NM_004064) rearrangement: c.475+58:CDKN1B_chr12:g.14676500del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1805194	NA	0	6	10	10
P-0037150-T01-IM6	SOMATIC	TET1	TET1	10	10	70446408	70449743	Exon 11 of TET1(+)	Intron of TET1(+):821bp before exon 12	GRCh37	INVERSION	TET1(NM_030625) Rearrangement : c.5348_c.5405-822inv	PRECISE		MANUAL_OK	5to5	-	3335	NA	0	25	10	28
P-0037150-T01-IM6	SOMATIC	RAB35	RAB35	12	4	120535008	8471515	3-UTR of RAB35(-):40bp after coding stop	Intron of TRMT44(+):1Kb before exon 10	GRCh37	TRANSLOCATION	RAB35 (NM_006861) Rearrangement : t(4;12)(p16.2;q24.22)(chr4:g.8471515::chr12:g.120535008)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	81	10	98
P-0037154-T01-IM6	SOMATIC	MAPK1	MAPK1	22	22	21800500	22161889	Exon 3 of HIC2(+)	Intron of MAPK1(-):63bp after exon 2	GRCh37	DELETION	MAPK1 (NM_002745) Rearrangement : c.302+64:MAPK1_c.1316:HIC2del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	361389	NA	0	17	10	17
P-0037229-T01-IM6	SOMATIC	FOXP1	FOXP1	3	3	71021309	71306509	Intron of FOXP1(-):396bp after exon 14	5-UTR of FOXP1(-):298Kb before coding start	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1652+397:FOXP1_chr3:g.71306509del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	285200	NA	0	26	10	28
P-0037230-T01-IM6	SOMATIC	RB1	RB1	13	13	48954455	48966438	Intron of RB1(+):78bp after exon 16	Intron of RB1(+):11Kb after exon 17	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1498+78_c.1695+10859del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	11983	NA	0	37	10	46
P-0037297-T01-IM6	SOMATIC	CHEK2	CHEK2	22	22	29091226	29592609	Exon 12 of CHEK2(-)	IGR: 9Kb before EMID1(+)	GRCh37	DELETION	CHEK2 (NM_007194) rearrangement: c.1264_chr22:g.29592609del	PRECISE		MANUAL_OK	3to5	-	501383	NA	0	47	10	77
P-0037322-T01-IM6	SOMATIC	DDR2	DDR2	2	1	240384262	162740087	IGR: 111Kb before MIR2467(-)	Intron of DDR2(+):4bp before exon 12	GRCh37	TRANSLOCATION	DDR2 (NM_006182) rearrangement: t(1;2)(q23.3;q37.3)(chr1:g.162740087::chr2:g.240384262)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	20	10	22
P-0037338-T01-IM6	SOMATIC	DEPDC7	SMARCB1	22	11	24133958	33040227	Exon 2 of SMARCB1(+)	Intron of DEPDC7(+):2Kb after exon 1	GRCh37	TRANSLOCATION	DEPDC7 (NM_001077242) - SMARCB1 (NM_003073) rearrangement: t(11;22)(p13;q11.23)(chr11:g.33040227::chr22:g.24133958)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DEPDC7:SMARCB1}	0	NA	0	13	0	13
P-0037338-T01-IM6	SOMATIC	YES1	ADRBK2	22	18	26044366	742917	Intron of ADRBK2(+):4Kb after exon 3	Exon 8 of YES1(-)	GRCh37	TRANSLOCATION	YES1 (NM_005433) - ADRBK2 (NM_005160) rearrangement: t(18;22)(p11.32;q12.1)(chr18:g.742917::chr22:g.26044366)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {YES1:ADRBK2}	0	NA	0	24	0	42
P-0037497-T01-IM6	SOMATIC	DNMT3A	SNTG2	2	2	995257	25470849	Intron of SNTG2(+):49Kb after exon 1	Intron of DNMT3A(-):56bp after exon 7	GRCh37	INVERSION	DNMT3A (NM_022552) - SNTG2 (NM_018968) Rearrangement : c.855+57:DNMT3A_c.72+48503:SNTG2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {DNMT3A:SNTG2}	24475592	NA	0	26	0	28
P-0037556-T02-IM6	SOMATIC	ANKRD11	ANKRD11	16	16	64001177	89371552	IGR: 980Kb before CDH11(-)	Intron of ANKRD11(-):61bp after exon 4	GRCh37	INVERSION	ANKRD11 (NM_013275) rearrangement: c.226+62:ANKRD11_chr16:g.64001177inv	PRECISE		MANUAL_OK	5to5	-	25370375	NA	0	77	10	84
P-0037639-T01-IM6	SOMATIC	UPF1	ZC3H7B	22	19	41744573	18976550	Intron of ZC3H7B(+):402bp after exon 15	Exon 22 of UPF1(+)	GRCh37	TRANSLOCATION	UPF1 (NM_002911) - ZC3H7B (NM_017590) rearrangement: t(19,22)(p13.11;q13.2)(chr19:g.18976550::chr22:g.41744573)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {UPF1:ZC3H7B}	0	NA	0	41	10	43
P-0037674-T01-IM6	SOMATIC	SPEN	SPEN	1	1	5804200	16259285	IGR: 119Kb before MIR4689(-)	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.6550:SPEN_chr1:g.5804200inv	PRECISE		MANUAL_OK	3to3	-	10455085	NA	0	13	10	13
P-0037728-T01-IM6	SOMATIC	PAK1	PAK1	11	11	77046959	97205904	Intron of PAK1(-):171bp after exon 13	IGR: 285Kb before MIR7976(-)	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.1413+172:PAK1_chr11:g.97205904del	PRECISE		MANUAL_OK	3to5	-	20158945	NA	0	5	9	5
P-0037728-T01-IM6	SOMATIC	BIRC3	BIRC3	12	11	74859022	102195780	IGR: 73Kb before ATXN7L3B(+)	Exon 3 of BIRC3(+)	GRCh37	TRANSLOCATION	BIRC3 (NM_182962) rearrangement: t(11;12)(q22.2;q21.1)(chr11:g.102195780::chr12:g.74859022)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	313	10	291
P-0037728-T01-IM6	SOMATIC	NAB2	NAB2	X	12	23509870	57486173	IGR: 157Kb before PTCHD1(+)	Intron of NAB2(+):57bp before exon 3	GRCh37	TRANSLOCATION	NAB2 (NM_005967) rearrangement: t(12;X)(q13.3;p22.11)(chr12:g.57486173::chrX:g.23509870)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	45	10	46
P-0037728-T01-IM6	SOMATIC	TBX3	TBX3	Y	12	22716517	115109879	IGR: 21Kb before EIF1AY(+)	Exon 8 of TBX3(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(12;Y)(q24.21;q11.223)(chr12:g.115109879::chrY:g.22716517)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	10	10	9
P-0037901-T01-IM6	SOMATIC	EPS15	NTRK1	1	1	51858813	156844212	Intron of EPS15(-):1Kb after exon 21	Intron of NTRK1(+):20bp after exon 9	GRCh37	INVERSION	EPS15 (NM_001981) - NTRK1 (NM_002529) rearrangement: c.2119+1240:EPS15_c.1195+20:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {EPS15:NTRK1}	104985399	NA	0	157	10	184
P-0037942-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55134073	55222656	Intron of EGFR(+):47Kb after exon 1	Intron of EGFR(+):811bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.88+47015_c.889+811del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	88583	NA	0	27	0	27
P-0038398-T03-IM6	SOMATIC	PIK3CA	NAALADL2	3	3	174581145	178952135	Intron of NAALADL2(+):4Kb after exon 1	Exon 21 of PIK3CA(+)	GRCh37	DUPLICATION	PIK3CA (NM_006218) - NAALADL2 (NM_207015) rearrangement: c.3190:PIK3CA_c.43+3905:NAALADL2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIK3CA:NAALADL2}	4370990	NA	0	7	10	8
P-0038961-T01-IM6	SOMATIC	KIF5B	RET	10	10	32312257	43610775	Intron of KIF5B(-):293bp before exon 16	Intron of RET(+):591bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-293:KIF5B_c.2136+591:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298518	NA	0	55	10	67
P-0039116-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1730073	1808698	Exon 4 of TACC3(+)	Intron of FGFR3(+):37bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+37:FGFR3_c.944:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	78625	NA	0	57	10	61
P-0039434-T01-IM6	SOMATIC	TP53	TP53	17	17	7578317	7580847	Intron of TP53(-):28bp before exon 6	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.560-28:TP53_chr17:g.7580847del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2530	NA	0	149	10	151
P-0039650-T01-IM6	SOMATIC	STK11	STK11	19	19	1222095	1224177	Intron of STK11(+):90bp after exon 7	Intron of STK11(+):1Kb after exon 8	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.920+90_c.1108+1006del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2082	NA	0	13	0	13
P-0039992-T01-IM6	SOMATIC	TSC1	TSC1	9	9	135772654	135804870	Exon 22 of TSC1(-)	5-UTR of TSC1(-):33Kb before coding start	GRCh37	DUPLICATION	TSC1 (NM_000368) rearrangement: c.2892:TSC1_chr9:g.135804870dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	32216	NA	0	24	10	25
P-0040042-T01-IM6	SOMATIC	TP53	TP53	17	17	7575746	7577526	Intron of TP53(-):1Kb after exon 9	Exon 7 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.755_c.993+1107del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1780	NA	0	25	10	29
P-0040114-T02-IM6	SOMATIC	NOTCH1	NOTCH1	9	9	139249444	139390644	Intron of GPSM1(+):697bp before exon 12	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.7547:NOTCH1_chr9:g.139249444del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	141200	NA	0	53	10	55
P-0040120-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55201465	55222128	Intron of EGFR(+):9Kb before exon 2	Intron of EGFR(+):283bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-8514_c.889+283del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20663	NA	0	68	10	254
P-0040120-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268539	55270285	Intron of EGFR(+):341bp before exon 25	Exon 27 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-342_c.3238del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1746	NA	0	10	10	36
P-0040151-T01-IM6	SOMATIC	TP53	TP53	17	13	7579500	40769058	Exon 4 of TP53(-)	3-UTR of LINC00548(-):26Kb after coding stop	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(13;17)(q14.11;p13.1)(chr13:g.40769058::chr17:g.7579500)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	39	10	49
P-0040151-T01-IM6	SOMATIC	ALOX12B	ALOX12B	17	13	7984434	49134420	Exon 3 of ALOX12B(-)	IGR: 17Kb before LINC00462(-)	GRCh37	TRANSLOCATION	ALOX12B (NM_001139) rearrangement: t(13;17)(q14.2;p13.1)(chr13:g.49134420::chr17:g.7984434)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	24	10	25
P-0040261-T01-IM6	SOMATIC	EML4	ALK	2	2	29447103	42527041	Intron of ALK(-):709bp before exon 20	Intron of EML4(+):1Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-1340:EML4_c.3173-709:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079938	NA	0	102	10	108
P-0040309-T01-IM6	SOMATIC	ALK	ALK	2	2	29447381	34064604	Intron of ALK(-):945bp after exon 19	5-UTR of LINC01317(+):458Kb before coding start	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3172+946:ALK_chr2:g.34064604inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LINC01317:ALK}	4617223	NA	0	55	10	54
P-0040382-T01-IM6	SOMATIC	RICTOR	RICTOR	5	5	38964784	45655385	Intron of RICTOR(-):109bp after exon 16	Intron of HCN1(-):10Kb before exon 2	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.1400+110:RICTOR_chr5:g.45655385inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	6690601	NA	0	12	10	12
P-0040525-T01-IM6	SOMATIC	KMT2D	KMT2D	12	12	49443510	49534969	Exon 11 of KMT2D(-)	IGR: 13Kb before TUBA1B(-)	GRCh37	DUPLICATION	KMT2D (NM_003482) rearrangement: c.3861:KMT2D_chr12:g.49534969dup	PRECISE		MANUAL_OK	5to3	-	91459	NA	0	21	10	22
P-0040525-T01-IM6	SOMATIC	DEDD2	ERF	19	19	42710092	42752758	Intron of DEDD2(-):4Kb after exon 4	Exon 4 of ERF(-)	GRCh37	DUPLICATION	DEDD2 (NM_133328) - ERF (NM_006494) rearrangement: c.589+3760:DEDD2_c.1506:ERFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DEDD2:ERF}	42666	NA	0	14	10	14
P-0040538-T01-IM6	SOMATIC	XIAP	CHRDL1	X	X	109991499	123019855	Intron of CHRDL1(-):11Kb after exon 4	Exon 2 of XIAP(+)	GRCh37	INVERSION	XIAP (NM_001167) - CHRDL1 (NM_145234) rearrangement: c.343:XIAP_c.301+11390:CHRDL1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {XIAP:CHRDL1}	13028356	NA	0	50	10	50
P-0040570-T01-IM6	SOMATIC	EML4	ALK	2	2	29448160	42505486	Intron of ALK(-):166bp after exon 19	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2504:EML4_c.3172+167:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13057326	NA	0	4	9	4
P-0040596-T01-IM6	SOMATIC	AXIN2	AXIN2	17	17	63504771	63533659	IGR: 20Kb before AXIN2(-)	Exon 6 of AXIN2(-)	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.1495:AXIN2_chr17:g.63504771del	PRECISE		MANUAL_OK	3to5	-	28888	NA	0	12	10	13
P-0040600-T01-IM6	SOMATIC	EML4	ALK	2	2	29447688	42493666	Intron of ALK(-):638bp after exon 19	Intron of EML4(+):2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+1795:EML4_c.3172+639:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13045978	NA	0	58	10	58
P-0040759-T01-IM6	SOMATIC	RECQL4	ARHGAP39	8	8	145737519	145774718	Intron of RECQL4(-):7bp after exon 19	Intron of ARHGAP39(-):845bp before exon 6	GRCh37	DUPLICATION	RECQL4 (NM_004260) - ARHGAP39 (NM_025251) rearrangement: c.3236+8:RECQL4_c.597-845:ARHGAP39dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {RECQL4:ARHGAP39}	37199	NA	0	56	10	57
P-0040933-T01-IM6	SOMATIC	DOT1L	DOT1L	19	5	2202736	16316521	Exon 9 of DOT1L(+)	IGR: 57Kb before LOC101929505(-)	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(5;19)(p15.1;p13.3)(chr5:g.16316521::chr19:g.2202736)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	88	10	87
P-0040979-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55183348	55222186	Intron of EGFR(+):27Kb before exon 2	Intron of EGFR(+):341bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) vIII intragenic deletion: c.89-26631_c.889+341del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	38838	NA	0	32	10	32
P-0040979-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55233115	55239558	Exon 15 of EGFR(+)	Intron of EGFR(+):652bp after exon 16	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.1865_c.1919+652del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6443	NA	0	106	0	123
P-0041037-T01-IM6	SOMATIC	CDH3	CDH1	16	16	68695806	68867139	Intron of CDH3(+):14Kb before exon 3	Intron of CDH1(+):53bp before exon 16	GRCh37	DELETION	CDH3 (NM_001793) - CDH1 (NM_004360) rearrangement: c.161-14482:CDH3_c.2440-54:CDH1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CDH3:CDH1}	171333	NA	0	5	8	5
P-0041037-T01-IM6	SOMATIC	ROS1	ROS1	6	6	117658923	119045740	Intron of ROS1(-):420bp before exon 31	IGR: 58Kb before LOC100287632(+)	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5080-420:ROS1_chr6:g.119045740del	PRECISE		MANUAL_OK	3to5	-	1386817	NA	0	7	10	7
P-0041128-T02-IM6	SOMATIC	SOX9	SOX9	17	17	66453733	70120199	5-UTR of PRKAR1A(+):58Kb before coding start	Exon 3 of SOX9(+)	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.1201:SOX9_chr17:g.66453733inv	PRECISE		MANUAL_OK	5to5	-	3666466	NA	0	105	10	122
P-0041247-T01-IM6	SOMATIC	MYOM1	CRLF2	X	18	1315073	3191087	Intron of CRLF2(-):59bp before exon 6	Intron of MYOM1(-):2Kb before exon 4	GRCh37	TRANSLOCATION	MYOM1 (NM_003803) - CRLF2 (NM_022148) rearrangement: t(18;X)(p11.31;p22.33)(chr18:g.3191087::chrX:g.1315073)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MYOM1:CRLF2}	0	NA	0	32	10	35
P-0041247-T01-IM6	SOMATIC	ATRX	ATRX	X	X	76936897	76938588	Intron of ATRX(-):114bp after exon 9	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.2160_c.3736+115inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1691	NA	0	8	10	9
P-0041371-T01-IM6	SOMATIC	TBKBP1	CDK12	17	17	37648975	45778439	Intron of CDK12(+):28bp before exon 4	Intron of TBKBP1(+):1Kb after exon 6	GRCh37	DUPLICATION	TBKBP1 (NM_014726) - CDK12 (NM_016507) rearrangement: c.872+1376:TBKBP1_c.2109-29:CDK12dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TBKBP1:CDK12}	8129464	NA	0	6	0	6
P-0041371-T01-IM6	SOMATIC	CDK12	SKAP1	17	17	37673680	46356712	Intron of CDK12(+):12bp before exon 10	Intron of SKAP1(-):67Kb after exon 4	GRCh37	INVERSION	CDK12 (NM_016507) - SKAP1 (NM_003726) rearrangement: c.2847-13:CDK12_c.280+66555:SKAP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {CDK12:SKAP1}	8683032	NA	0	5	8	5
P-0041409-T01-IM6	SOMATIC	BRCA2	BRCA2	13	7	32969277	30630720	Intron of BRCA2(+):207bp after exon 25	IGR: 3Kb before GARS(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(7;13)(p14.3;q13.1)(chr7:g.30630720::chr13:g.32969277)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	12	10	12
P-0041409-T01-IM6	SOMATIC	TET2	TET2	22	4	48672816	106156620	Promoter of MIR3201(+):3Kb from tx start	Exon 3 of TET2(+)	GRCh37	TRANSLOCATION	TET2 (NM_001127208) rearrangement: t(4;22)(q24;q13.32)(chr4:g.106156620::chr22:g.48672816)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	101	10	100
P-0041422-T01-IM6	SOMATIC	ETV6	ETV6	14	12	106257006	12030747	IGR: 121Kb before ELK2AP(-)	Intron of ETV6(+):7Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;14)(p13.2;q32.33)(chr12:g.12030747::chr14:g.106257006)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	10	10	10
P-0041513-T01-IM6	SOMATIC	KMT2D	IRAK3	12	12	49434665	66600424	Exon 31 of KMT2D(-)	Intron of IRAK3(+):3Kb after exon 2	GRCh37	INVERSION	KMT2D (NM_003482) - IRAK3 (NM_007199) rearrangement: c.6888:KMT2D_c.316+2751:IRAK3inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KMT2D:IRAK3}	17165759	NA	0	262	10	388
P-0041513-T01-IM6	SOMATIC	ABCC4	MDM2	13	12	95779735	69229720	Intron of ABCC4(-):11Kb before exon 19	Exon 9 of MDM2(+)	GRCh37	TRANSLOCATION	ABCC4 (NM_005845) - MDM2 (NM_002392) rearrangement: t(12;13)(q15;q32.1)(chr12:g.69229720::chr13:g.95779735)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ABCC4:MDM2}	0	NA	0	15	10	30
P-0041623-T01-IM6	SOMATIC	TSC2	TSC2	16	4	2126001	99223910	Intron of TSC2(+):67bp before exon 24	Intron of RAP1GDS1(+):9Kb after exon 2	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(4;16)(q23;p13.3)(chr4:g.99223910::chr16:g.2126001)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	NA	0	11	10	11
P-0041623-T01-IM6	SOMATIC	PIK3CG	PIK3CG	20	7	19014680	106508538	IGR: 179Kb before SLC24A3(+)	Exon 2 of PIK3CG(+)	GRCh37	TRANSLOCATION	PIK3CG (NM_002649) rearrangement: t(7;20)(q22.3;p11.23)(chr7:g.106508538::chr20:g.19014680)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	5	10	6
P-0041640-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55168886	55222497	Intron of EGFR(+):41Kb before exon 2	Intron of EGFR(+):652bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-41093_c.889+652del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	53611	NA	0	11	10	12
P-0041673-T01-IM6	SOMATIC	SPRED1	SPRED1	15	10	38643427	27549982	Exon 7 of SPRED1(+)	IGR: 15Kb before LRRC37A6P(-)	GRCh37	TRANSLOCATION	SPRED1 (NM_152594) rearrangement: t(10;15)(p12.1;q14)(chr10:g.27549982::chr15:g.38643427)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	78	10	77
P-0041729-T02-IM6	SOMATIC	G3BP1	ALK	5	2	151179562	29446240	Intron of G3BP1(+):1bp after exon 9	Exon 20 of ALK(-)	GRCh37	TRANSLOCATION	G3BP1 (NM_198395) - ALK (NM_004304) fusion: t(2;5)(p23.2;q33.1)(chr2:g.29446240::chr5:g.151179562)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {G3BP1:ALK}	0	NA	0	21	10	19
P-0042121-T01-IM6	SOMATIC	SMYD3	SMYD3	1	1	246670337	247310040	Intron of SMYD3(-):18bp after exon 1	Intron of ZNF124(-):12Kb after exon 3	GRCh37	DUPLICATION	SMYD3 (NM_001167740) rearrangement: c.164+19:SMYD3_chr1:g.247310040dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SMYD3:ZNF124}	639703	NA	0	9	10	9
P-0042121-T01-IM6	SOMATIC	NOTCH3	EPHX3	19	19	15302622	15340794	Exon 5 of NOTCH3(-)	Intron of EPHX3(-):978bp after exon 4	GRCh37	DUPLICATION	NOTCH3 (NM_000435) - EPHX3 (NM_024794) rearrangement: c.736:NOTCH3_c.616+979:EPHX3dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH3:EPHX3}	38172	NA	0	7	0	7
P-0042145-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55268338	56430178	Intron of EGFR(+):232bp after exon 24	IGR: 61Kb before LOC650226(-)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+232:EGFR_chr7:g.56430178del	IMPPRECISE		MANUAL_OK	3to5	-	1161840	NA	0	190	0	772
P-0042222-T01-IM6	SOMATIC	BCL2	BCL2	18	18	59604842	60950118	IGR: 107Kb before PIGN(-)	Intron of BCL2(-):35Kb after exon 2	GRCh37	INVERSION	BCL2 (NM_000633) rearrangement: c.585+35197:BCL2_chr18:g.59604842inv	PRECISE		MANUAL_OK	5to5	-	1345276	NA	0	18	10	18
P-0042222-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11066021	11137027	IGR: 6Kb before SMARCA4(+)	Intron of SMARCA4(+):5bp after exon 23	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3215+5:SMARCA4_chr19:g.11066021del	PRECISE		MANUAL_OK	3to5	-	71006	NA	0	12	10	12
P-0042222-T01-IM6	SOMATIC	TP53	TP53	20	17	48337428	7579702	IGR: 88Kb before B4GALT5(-)	Exon 3 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;20)(p13.1;q13.13)(chr17:g.7579702::chr20:g.48337428)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	49	10	56
P-0042311-T01-IM6	SOMATIC	SPEN	SPEN	1	1	11134238	16257852	Intron of EXOSC10(-):49bp after exon 18	Exon 11 of SPEN(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.5117:SPEN_chr1:g.11134238del	PRECISE		MANUAL_OK	3to5	-	5123614	NA	0	65	10	65
P-0042314-T01-IM6	SOMATIC	ASAP2	DNMT3A	2	2	9458955	25458902	Intron of ASAP2(+):228bp after exon 4	Intron of DNMT3A(-):208bp before exon 22	GRCh37	INVERSION	ASAP2 (NM_003887) - DNMT3A (NM_022552) rearrangement: c.420+228:ASAP2_c.2479-208:DNMT3Ainv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ASAP2:DNMT3A}	15999947	NA	0	11	10	11
P-0042314-T01-IM6	SOMATIC	PARK2	PARK2	6	6	58325464	162683605	IGR: 53Kb before GUSBP4(-)	Exon 3 of PARK2(-)	GRCh37	INVERSION	PARK2 (NM_004562) rearrangement: c.364:PARK2_chr6:g.58325464inv	PRECISE		MANUAL_OK	3to3	-	104358141	NA	0	53	10	68
P-0042314-T01-IM6	SOMATIC	ROS1	ROS1	6	6	93838974	117654130	IGR: 111Kb before EPHA7(-)	Intron of ROS1(-):4Kb before exon 32	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.5249-3521:ROS1_chr6:g.93838974del	IMPPRECISE		MANUAL_OK	3to5	-	23815156	NA	0	5	0	5
P-0042334-T01-IM6	SOMATIC	GNAS	GNAS	20	1	57484747	209041232	Exon 10 of GNAS(+)	IGR: 561Kb before MIR205HG(+)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(1;20)(q32.2;q13.32)(chr1:g.209041232::chr20:g.57484747)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	27	10	28
P-0042334-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21974875	22187864	Intron of CDKN2A(-):4Kb before exon 2	IGR: 185Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3668:CDKN2A_chr9:g.22187864del	PRECISE		MANUAL_OK	3to5	-	212989	NA	0	10	10	12
P-0042355-T01-IM6	SOMATIC	CIC	CIC	19	10	42797695	42389428	Intron of CIC(+):48bp before exon 16	IGR: 438Kb before LOC441666(-)	GRCh37	TRANSLOCATION	CIC (NM_015125) rearrangement: t(10;19)(q11.21;q13.2)(chr10:g.42389428::chr19:g.42797695)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	5	10	9
P-0042355-T01-IM6	SOMATIC	AKT2	AKT2	19	19	13268475	40748364	Promoter of IER2(+):7Kb from tx start	Intron of AKT2(-):76bp after exon 5	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.441+77:AKT2_chr19:g.13268475inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {AKT2:IER2}	27479889	NA	0	5	7	5
P-0042402-T01-IM6	SOMATIC	NF1	NF1	17	17	29634122	29653023	Intron of NF1(+):19Kb before exon 37	Exon 37 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4836-18716_c.5021del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18901	NA	0	24	10	29
P-0042417-T01-IM6	SOMATIC	CCDC6	RET	10	10	43610397	61649492	Intron of RET(+):213bp after exon 11	Intron of CCDC6(-):16Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+16388:CCDC6_c.2136+213:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18039095	NA	0	67	10	75
P-0042515-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741011	1808841	Intron of TACC3(+):417bp before exon 11	Intron of FGFR3(+):1bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-2:FGFR3_c.1942-418:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67830	NA	0	984	10	1809
P-0042599-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11152024	11154451	Exon 30 of SMARCA4(+)	Intron of SMARCA4(+):2Kb after exon 30	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4212_c.4424+2215del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2427	NA	0	17	10	20
P-0042608-T01-IM6	SOMATIC	KIF5B	RET	10	10	32313634	43611802	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):229bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1670:KIF5B_c.2137-230:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11298168	NA	0	87	10	107
P-0042608-T01-IM6	SOMATIC	WNT10B	KMT2D	12	12	49362983	49426577	Intron of WNT10B(-):881bp before exon 4	Exon 39 of KMT2D(-)	GRCh37	DUPLICATION	WNT10B (NM_003394) - KMT2D (NM_003482) rearrangement: c.338-881:WNT10B_c.11911:KMT2Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {WNT10B:KMT2D}	63594	NA	0	13	10	13
P-0042612-T01-IM6	SOMATIC	PIK3R2	PIK3R2	20	19	25673697	18272932	5-UTR of ZNF337(-):18Kb before coding start	Intron of PIK3R2(+):71bp after exon 7	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(19;20)(p13.11;p11.1)(chr19:g.18272932::chr20:g.25673697)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {PIK3R2:ZNF337}	0	NA	0	7	0	7
P-0043170-T01-IM6	SOMATIC	CIC	CIC	19	19	42785275	42794196	IGR: 4Kb before CIC(+)	Intron of CIC(+):93bp after exon 9	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.1464+93:CIC_chr19:g.42785275del	PRECISE		MANUAL_OK	3to5	-	8921	NA	0	56	10	56
P-0043234-T01-IM6	SOMATIC	CCND2	RAD51B	14	12	68610135	4388092	Intron of RAD51B(+):148Kb before exon 8	Intron of CCND2(+):7bp after exon 3	GRCh37	TRANSLOCATION	CCND2 (NM_001759) - RAD51B (NM_133509) rearrangement: t(12;14)(p13.32;q24.1)(chr12:g.4388092::chr14:g.68610135)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CCND2:RAD51B}	0	NA	0	5	10	5
P-0043243-T01-IM6	SOMATIC	STAT3	STAT3	17	17	40491441	40498154	Intron of STAT3(-):14bp before exon 5	Intron of STAT3(-):432bp after exon 3	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.273+433_c.373-14del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	6713	NA	0	6	10	6
P-0043243-T01-IM6	SOMATIC	SIRT2	ANKRD11	19	16	39372774	89351636	Intron of SIRT2(-):643bp before exon 10	Exon 9 of ANKRD11(-)	GRCh37	TRANSLOCATION	SIRT2 (NM_012237) - ANKRD11 (NM_013275) rearrangement: t(16;19)(q24.3;q13.2)(chr16:g.89351636::chr19:g.39372774)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SIRT2:ANKRD11}	0	NA	0	9	10	9
P-0043363-T01-IM6	SOMATIC	EML4	ALK	2	2	29448101	42553305	Intron of ALK(-):225bp after exon 19	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2254:EML4_c.3172+226:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13105204	NA	0	73	10	73
P-0043498-T02-IM6	SOMATIC	EML4	ALK	2	2	29446963	42526239	Intron of ALK(-):569bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2142:EML4_c.3173-569:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079276	NA	0	50	10	49
P-0043562-T01-IM6	SOMATIC	PIK3C2G	PIK3C2G	12	12	18800736	64258801	Intron of PIK3C2G(+):73bp before exon 32	Intron of SRGAP1(+):20Kb after exon 1	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.4186-74:PIK3C2G_chr12:g.64258801inv	PRECISE		MANUAL_OK	5to5	-	45458065	NA	0	4	6	5
P-0043632-T01-IM6	SOMATIC	GLI1	ZFAND3	12	6	57859454	38088525	Exon 6 of GLI1(+)	Intron of ZFAND3(+):4Kb after exon 5	GRCh37	TRANSLOCATION	GLI1 (NM_005269) - ZFAND3 (NM_021943) rearrangement: t(6;12)(p21.2;q13.3)(chr6:g.38088525::chr12:g.57859454)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GLI1:ZFAND3}	0	NA	0	7	10	8
P-0043696-T01-IM6	SOMATIC	JAK2	JAK2	9	9	5063392	5064991	Intron of JAK2(+):1Kb before exon 9	Exon 9 of JAK2(+)	GRCh37	DELETION	JAK2 (NM_004972) rearrangement: c.1057-1491_c.1165del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1599	NA	0	6	10	6
P-0043711-T01-IM6	SOMATIC	EP300	EP300	22	22	41551955	41553316	Intron of EP300(+):838bp after exon 17	Exon 18 of EP300(+)	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.3261+838_c.3405del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1361	NA	0	101	10	103
P-0043829-T01-IM6	SOMATIC	CBL	CBL	11	11	119148994	119151557	Exon 8 of CBL(+)	Intron of CBL(+):2Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1214_c.1431+2134del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2563	NA	0	63	10	66
P-0043867-T01-IM6	SOMATIC	TP53	TP53	17	17	7579460	7582510	Exon 4 of TP53(-)	5-UTR of TP53(-):10Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.227:TP53_chr17:g.7582510del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3050	NA	0	111	10	124
P-0043908-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55107224	55222168	Intron of EGFR(+):20Kb after exon 1	Intron of EGFR(+):323bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+20166_c.889+323del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	114944	NA	0	288	10	305
P-0044057-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1737269	1808714	Intron of TACC3(+):188bp before exon 8	Intron of FGFR3(+):53bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+53:FGFR3_c.1645-189:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	71445	NA	0	12	10	12
P-0044077-T01-IM6	SOMATIC	PXN	MSI1	12	12	120672126	120791126	Intron of PXN(-):10Kb before exon 2	Exon 10 of MSI1(-)	GRCh37	DUPLICATION	PXN (NM_001080855) - MSI1 (NM_002442) rearrangement: c.14-9946:PXN_c.709:MSI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PXN:MSI1}	119000	NA	0	23	10	27
P-0044081-T01-IM6	SOMATIC	FGFR1	FGFR1	8	8	38088992	38285998	Promoter of DDHD2(+):478bp from tx start	Intron of FGFR1(-):45bp before exon 5	GRCh37	DUPLICATION	FGFR1 (NM_001174067) rearrangement: c.458-45:FGFR1_chr8:g.38088992dup	PRECISE		MANUAL_OK	5to3	-	197006	NA	0	50	10	81
P-0044100-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55181119	55231499	Intron of EGFR(+):29Kb before exon 2	Exon 14 of EGFR(+)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.89-28860_c.1705inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	50380	NA	0	48	10	47
P-0044100-T02-IM6	SOMATIC	EGFR	EGFR	7	7	55212141	55241624	Intron of EGFR(+):960bp after exon 3	Exon 18 of EGFR(+)	GRCh37	INVERSION	EGFR (NM_005228) rearrangement: c.424+960_c.2072inv	PRECISE		MANUAL_OK	5to5	-	29483	NA	0	31	10	32
P-0044246-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	19	11105689	32708379	Intron of SMARCA4(+):12bp after exon 9	IGR: 115Kb before LOC101927411(-)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1593+12:SMARCA4_chr19:g.32708379del	PRECISE		MANUAL_OK	3to5	-	21602690	NA	0	147	10	416
P-0044246-T01-IM6	SOMATIC	SIPA1L3	KDM5C	X	19	53231096	38649964	Exon 13 of KDM5C(-)	Intron of SIPA1L3(+):3Kb before exon 14	GRCh37	TRANSLOCATION	SIPA1L3 (NM_015073) - KDM5C (NM_004187) rearrangement: t(19;X)(q13.13;p11.22)(chr19:g.38649964::chrX:g.53231096)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {SIPA1L3:KDM5C}	0	NA	0	17	10	18
P-0044380-T02-IM6	SOMATIC	RET	RET	10	7	43607734	89052378	Intron of RET(+):62bp after exon 8	IGR: 459Kb before STEAP2-AS1(-)	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(7;10)(q21.13;q11.21)(chr7:g.89052378::chr10:g.43607734)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	88	10	89
P-0044402-T01-IM6	SOMATIC	ERF	ERF	19	2	42752863	76279515	Exon 4 of ERF(-)	IGR: 351Kb before GCFC2(-)	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(2;19)(p12;q13.2)(chr2:g.76279515::chr19:g.42752863)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	27	10	26
P-0044508-T01-IM6	SOMATIC	KMT2A	KMT2A	11	10	118355582	30038987	Exon 10 of KMT2A(+)	IGR: 148Kb before MIR938(-)	GRCh37	TRANSLOCATION	KMT2A (NM_001197104) rearrangement: t(10;11)(p11.23;q23.3)(chr10:g.30038987::chr11:g.118355582)	PRECISE		MANUAL_OK	5to3	-	0	NA	0	78	10	79
P-0044508-T01-IM6	SOMATIC	KNSTRN	KNSTRN	15	15	40684334	96577608	Intron of KNSTRN(+):110bp after exon 8	IGR: 93Kb before NR2F2-AS1(-)	GRCh37	INVERSION	KNSTRN (NM_033286) rearrangement: c.822+110:KNSTRN_chr15:g.96577608inv	PRECISE		MANUAL_OK	3to3	-	55893274	NA	0	3	6	3
P-0044508-T01-IM6	SOMATIC	CARM1	CARM1	19	1	11031663	56084870	Intron of CARM1(+):41bp after exon 13	IGR: 394Kb before MIR4422(+)	GRCh37	TRANSLOCATION	CARM1 (NM_199141) rearrangement: t(1;19)(p32.3;p13.2)(chr1:g.56084870::chr19:g.11031663)	IMPPRECISE		MANUAL_OK	3to3	-	0	NA	0	23	0	23
P-0044508-T01-IM6	SOMATIC	TP63	TP63	8	3	104498857	189455488	IGR: 14Kb before RIMS2(+)	Intron of TP63(+):40bp before exon 2	GRCh37	TRANSLOCATION	TP63 (NM_003722) rearrangement: t(3;8)(q28;q22.3)(chr3:g.189455488::chr8:g.104498857)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	11	10	11
P-0044553-T01-IM6	SOMATIC	MSH2	MSH2	2	2	47672722	55298287	Exon 8 of MSH2(+)	IGR: 99Kb before RTN4(-)	GRCh37	INVERSION	MSH2 (NM_000251) rearrangement: c.1312:MSH2_chr2:g.55298287inv	PRECISE		MANUAL_OK	5to5	-	7625565	NA	0	78	10	88
P-0044573-T02-IM6	SOMATIC	KDM5C	KDM5C	X	X	53243697	56088193	Intron of KDM5C(-):173bp after exon 8	IGR: 171Kb before KLF8(+)	GRCh37	INVERSION	KDM5C (NM_004187) rearrangement: c.1122+174:KDM5C_chrX:g.56088193inv	PRECISE		MANUAL_OK	5to5	-	2844496	NA	0	5	10	12
P-0044575-T01-IM6	SOMATIC	PDCD1LG2	PDCD1LG2	9	9	5534823	19387023	Exon 3 of PDCD1LG2(+)	IGR: 11Kb before RPS6(-)	GRCh37	DELETION	PDCD1LG2 (NM_025239) rearrangement: c.134:PDCD1LG2_chr9:g.19387023del	PRECISE		MANUAL_OK	3to5	-	13852200	NA	0	25	10	26
P-0044656-T01-IM6	SOMATIC	SOX9	SOX9	17	17	70117898	70359850	Exon 1 of SOX9(+)	IGR: 40Kb before LINC00673(-)	GRCh37	INVERSION	SOX9 (NM_000346) rearrangement: c.366:SOX9_chr17:g.70359850inv	PRECISE		MANUAL_OK	3to3	-	241952	NA	0	2	9	2
P-0044656-T01-IM6	SOMATIC	TMPRSS2	ERG	21	21	39868977	42873818	Intron of ERG(-):1Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3702:TMPRSS2_c.18+1310:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3004841	NA	0	79	10	81
P-0044661-T01-IM6	SOMATIC	SBF2	EPAS1	11	2	9929559	46605894	Intron of SBF2(-):12Kb before exon 17	Exon 11 of EPAS1(+)	GRCh37	TRANSLOCATION	SBF2 (NM_030962) - EPAS1 (NM_001430) rearrangement: t(2;11)(p21;p15.4)(chr2:g.46605894::chr11:g.9929559)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {SBF2:EPAS1}	0	NA	0	25	10	27
P-0044763-T01-IM6	SOMATIC	CIT	KMT2D	12	12	49437231	120181404	Intron of KMT2D(-):20bp before exon 24	Intron of CIT(-):1Kb before exon 23	GRCh37	DELETION	CIT (NM_001206999) - KMT2D (NM_003482) rearrangement: c.2905-1135:CIT_c.5468-20:KMT2Ddel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CIT:KMT2D}	70744173	NA	0	111	10	354
P-0044763-T01-IM6	SOMATIC	SETD2	SETD2	8	3	124064675	47139632	IGR: 20Kb before TBC1D31(+)	Intron of SETD2(-):61bp before exon 9	GRCh37	TRANSLOCATION	SETD2 (NM_014159) rearrangement: t(3;8)(p21.31;q24.13)(chr3:g.47139632::chr8:g.124064675)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	16	10	16
P-0044902-T01-IM6	SOMATIC	DAXX	DAXX	6	6	33289300	37277191	Exon 3 of DAXX(-)	Intron of TBC1D22B(+):4Kb before exon 9	GRCh37	DELETION	DAXX (NM_001141970) rearrangement: c.288:DAXX_chr6:g.37277191del	PRECISE		MANUAL_OK	3to5	-	3987891	NA	0	25	10	26
P-0044969-T01-IM6	SOMATIC	PRKD1	PRKD1	14	14	30108149	30135014	Intron of PRKD1(-):39bp before exon 5	Intron of PRKD1(-):268bp after exon 3	GRCh37	INVERSION	PRKD1 (NM_002742) rearrangement: c.535+269_c.697-39inv	IMPPRECISE		MANUAL_OK	3to3	-	26865	NA	0	5	0	5
P-0044969-T01-IM6	SOMATIC	NF1	NF1	17	7	29528219	68108423	Intron of NF1(+):42bp after exon 10	IGR: 623Kb before LOC102723427(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(7;17)(q11.22;q11.2)(chr7:g.68108423::chr17:g.29528219)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	6	8	7
P-0044988-T01-IM6	SOMATIC	EML4	ALK	2	2	29447794	42525326	Intron of ALK(-):532bp after exon 19	Intron of EML4(+):3Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2670:EML4_c.3172+533:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077532	NA	0	18	10	18
P-0049880-T01-IM6	SOMATIC	PTEN	PTEN	10	10	89716251	89720623	Intron of PTEN(+):1Kb before exon 7	Intron of PTEN(+):27bp before exon 8	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.635-1359_c.802-28del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	4372	NA	0	5	0	7
P-0054419-T01-IM6	SOMATIC	SDC4	ROS1	20	6	43955928	117645734	Exon 5 of SDC4(-)	Intron of ROS1(-):156bp before exon 34	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117645734::chr20:g.43955928)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SDC4:ROS1}	0	NA	0	61	10	60
P-0054419-T02-IM6	SOMATIC	SDC4	ROS1	20	6	43955928	117645734	Exon 5 of SDC4(-)	Intron of ROS1(-):156bp before exon 34	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117645734::chr20:g.43955928)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SDC4:ROS1}	0	NA	0	62	10	51
P-0054867-T02-IM7	SOMATIC	LZTR1	LZTR1	22	22	21344084	21345712	Intron of LZTR1(+):113bp after exon 7	Intron of LZTR1(+):204bp before exon 9	GRCh37	DELETION	LZTR1 (NM_006767) rearrangement: c.651+113_c.792-205del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1628	60	0	38	0	42
P-0062760-T01-IM7	SOMATIC	RAB11FIP4	NF1	17	17	29654614	29770935	Exon 37 of NF1(+)	Intron of RAB11FIP4(+):10Kb after exon 3	GRCh37	DUPLICATION	RAB11FIP4 (NM_032932) - NF1 (NM_001042492) rearrangement: c.336+9795:RAB11FIP4_c.5366:NF1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {RAB11FIP4:NF1}	116321	44	0	4	10	4
P-0048725-T02-IM7	SOMATIC	SMARCB1	SMARCB1	22	22	24143177	24144317	Exon 4 of SMARCB1(+)	Intron of SMARCB1(+):1Kb after exon 4	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.409_c.500+1049del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1140	60	0	9	10	9
P-0052103-T02-IM7	SOMATIC	AXIN1	NPRL3	16	16	160232	396102	Intron of NPRL3(-):290bp after exon 4	Intron of AXIN1(-):45bp after exon 2	GRCh37	DELETION	AXIN1 (NM_003502) - NPRL3 (NM_001077350) rearrangement: c.878+46:AXIN1_c.629+291:NPRL3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AXIN1:NPRL3}	235870	35	0	52	10	66
P-0052103-T02-IM7	SOMATIC	SRSF2	SRSF2	17	17	74728768	74732641	Promoter of SRSF2(-):1Kb from tx start	Intron of SRSF2(-):95bp before exon 2	GRCh37	DELETION	SRSF2 (NM_003016) rearrangement: c.363-95:SRSF2_chr17:g.74728768del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3873	60	0	17	10	17
P-0054725-T03-IM7	SOMATIC	POLE	POLE	12	12	133208902	133225948	Exon 45 of POLE(-)	Exon 31 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.3949_c.6329del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17046	60	0	48	10	48
P-0061445-T02-IM7	SOMATIC	B2M	TRIM69	15	15	45007783	45051196	Exon 2 of B2M(+)	Intron of TRIM69(+):144bp after exon 4	GRCh37	DELETION	B2M (NM_004048) - TRIM69 (NM_182985) rearrangement: c.230:B2M_c.813+144:TRIM69del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {B2M:TRIM69}	43413	60	0	5	7	5
P-0061445-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52668753	52672631	Exon 12 of PBRM1(-)	Intron of PBRM1(-):3Kb after exon 11	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.1087+3339_c.1166del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3878	60	0	47	0	50
P-0062748-T01-IM7	SOMATIC	DNMT3A	DNMT3A	2	2	25464729	25467173	Intron of DNMT3A(-):153bp before exon 17	Exon 15 of DNMT3A(-)	GRCh37	DUPLICATION	DNMT3A (NM_022552) rearrangement: c.1702_c.1937-153dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2444	55	0	11	0	12
P-0062780-T01-IM7	SOMATIC	PPP2R1A	PPP2R1A	19	19	51600835	52715929	Promoter of CTU1(-):27bp from tx start	Intron of PPP2R1A(+):9bp before exon 5	GRCh37	INVERSION	PPP2R1A (NM_014225) rearrangement: c.504-10:PPP2R1A_chr19:g.51600835inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {PPP2R1A:CTU1}	1115094	60	0	52	10	53
P-0062784-T01-IM7	SOMATIC	ST3GAL2	NOTCH1	16	9	70423524	139417319	Intron of ST3GAL2(-):1Kb before exon 4	Exon 4 of NOTCH1(-)	GRCh37	TRANSLOCATION	ST3GAL2 (NM_006927) - NOTCH1 (NM_017617) rearrangement: t(9;16)(q34.3;q22.1)(chr9:g.139417319::chr16:g.70423524)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ST3GAL2:NOTCH1}	0	52	0	34	10	40
P-0062786-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	26608583	27099303	Promoter of SH3BGRL3(+):2Kb from tx start	Exon 14 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3540:ARID1A_chr1:g.26608583del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SH3BGRL3:ARID1A}	490720	60	0	5	10	5
P-0062787-T01-IM7	SOMATIC	NTRK1	NTRK1	1	1	156835542	156924772	Intron of NTRK1(+):951bp after exon 3	Intron of ARHGEF11(-):59bp before exon 20	GRCh37	DELETION	NTRK1 (NM_002529) rearrangement: c.359+951:NTRK1_chr1:g.156924772del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	89230	60	0	4	7	4
P-0062787-T01-IM7	SOMATIC	CD74	CD74	5	5	149783111	149795405	Intron of CD74(-):236bp before exon 7	Promoter of CD74(-):14Kb from tx start	GRCh37	DELETION	CD74 (NM_001025159) rearrangement: c.626-236:CD74_chr5:g.149795405del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	12294	25	0	5	9	6
P-0062791-T01-IM7	SOMATIC	EPHX3	BRD4	19	19	15341136	15355796	Intron of EPHX3(-):636bp after exon 4	Intron of BRD4(-):223bp before exon 12	GRCh37	DUPLICATION	EPHX3 (NM_024794) - BRD4 (NM_058243) rearrangement: c.616+637:EPHX3_c.2159-223:BRD4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {EPHX3:BRD4}	14660	44	0	7	10	7
P-0062794-T01-IM7	SOMATIC	CDKN2A	CDKN2A	11	9	117272418	21973546	Intron of CEP164(+):4Kb after exon 27	Intron of CDKN2A(-):2Kb before exon 2	GRCh37	TRANSLOCATION	CDKN2A (NM_058195) rearrangement: t(9;11)(p21.3;q23.3)(chr9:g.21973546::chr11:g.117272418)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	48	0	48	10	56
P-0062794-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32912533	32964483	Exon 11 of BRCA2(+)	Intron of BRCA2(+):4Kb before exon 25	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.4041_c.9257-4343del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	51950	60	0	18	0	18
P-0062796-T01-IM7	SOMATIC	TERT	TERT	18	5	56076934	1282950	IGR: 41Kb before MIR122(+)	Intron of TERT(-):211bp before exon 3	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;18)(p15.33;q21.31)(chr5:g.1282950::chr18:g.56076934)	PRECISE		MANUAL_OK	5to5	-	0	60	0	10	10	15
P-0062799-T01-IM7	SOMATIC	WT1	WT1	11	11	32420068	32456874	Intron of WT1(-):1Kb after exon 6	Exon 1 of WT1(-)	GRCh37	DUPLICATION	WT1 (NM_024426) rearrangement: c.18_c.1098+1426dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	36806	60	0	2	8	2
P-0062799-T01-IM7	SOMATIC	MDC1	FLOT1	6	6	30672599	30706908	Exon 10 of MDC1(-)	Intron of FLOT1(-):1Kb after exon 8	GRCh37	DUPLICATION	MDC1 (NM_014641) - FLOT1 (NM_005803) rearrangement: c.4361:MDC1_c.723+1027:FLOT1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MDC1:FLOT1}	34309	60	0	9	10	9
P-0062799-T01-IM7	SOMATIC	PREX2	PREX2	8	8	68934371	68960843	Exon 4 of PREX2(+)	Intron of PREX2(+):4Kb after exon 8	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.437_c.943+4018dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	26472	60	0	7	10	8
P-0062806-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12017032	24371421	Intron of ETV6(+):5Kb before exon 5	5-UTR of SOX5(-):684Kb before coding start	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.464-5326:ETV6_chr12:g.24371421inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {SOX5:ETV6}	12354389	60	0	29	0	33
P-0062813-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38276145	38281775	Intron of FGFR1(-):254bp before exon 11	Intron of FGFR1(-):251bp after exon 8	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.1029+252_c.1378-254inv	PRECISE		MANUAL_OK	3to3	-	5630	60	0	46	10	45
P-0062818-T02-IM7	SOMATIC	ERBB4	ERBB4	2	2	212329289	212522413	Intron of ERBB4(-):33Kb before exon 21	Intron of ERBB4(-):65bp after exon 16	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.1946+66_c.2488-33464del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	193124	60	0	5	5	5
P-0062838-T01-IM7	SOMATIC	NOTCH2	NOTCH2	4	1	66835788	120479739	IGR: 300Kb before EPHA5-AS1(+)	Intron of NOTCH2(-):165bp after exon 21	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q13.2)(chr1:g.120479739::chr4:g.66835788)	PRECISE		MANUAL_OK	5to5	-	0	60	0	16	10	17
P-0062840-T01-IM7	SOMATIC	ATM	ATM	15	11	75438656	108119632	IGR: 56Kb before C15orf39(+)	Intron of ATM(+):27bp before exon 9	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(11;15)(q22.3;q24.2)(chr11:g.108119632::chr15:g.75438656)	PRECISE		MANUAL_OK	3to5	-	0	34	0	6	10	7
P-0062866-T01-IM7	SOMATIC	SDHAF2	SDHAF2	11	7	61213308	65836802	Intron of SDHAF2(+):104bp before exon 4	IGR: 4Kb before LINC00174(-)	GRCh37	TRANSLOCATION	SDHAF2 (NM_017841) rearrangement: t(7;11)(q11.21;q12.2)(chr7:g.65836802::chr11:g.61213308)	PRECISE		MANUAL_OK	5to5	-	0	60	0	27	10	27
P-0062866-T01-IM7	SOMATIC	CYLD	CYLD	16	16	47094942	50818110	IGR: 20Kb before NETO2(-)	Intron of CYLD(+):129bp before exon 11	GRCh37	INVERSION	CYLD (NM_001042355) rearrangement: c.1818-130:CYLD_chr16:g.47094942inv	PRECISE		MANUAL_OK	5to5	-	3723168	60	0	27	10	27
P-0062866-T01-IM7	SOMATIC	GPS2	DNAH9	17	17	7217846	11567443	Exon 3 of GPS2(-)	Intron of DNAH9(+):706bp before exon 15	GRCh37	INVERSION	GPS2 (NM_004489) - DNAH9 (NM_001372) rearrangement: c.165:GPS2_c.2596-707:DNAH9inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GPS2:DNAH9}	4349597	60	0	38	10	49
P-0062866-T01-IM7	SOMATIC	DNMT3B	DNMT3B	20	20	31069252	31386202	Intron of NOL4L(-):7Kb before exon 5	Intron of DNMT3B(+):63bp before exon 15	GRCh37	DELETION	DNMT3B (NM_006892) rearrangement: c.1491-64:DNMT3B_chr20:g.31069252del	PRECISE		MANUAL_OK	3to5	-	316950	60	0	22	10	22
P-0062866-T01-IM7	SOMATIC	ERG	ERG	21	21	35118543	39870283	Intron of ITSN1(+):4Kb before exon 6	Intron of ERG(-):3bp after exon 1	GRCh37	DELETION	ERG (NM_182918) rearrangement: c.18+4:ERG_chr21:g.35118543del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4751740	60	0	6	10	6
P-0062868-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32913225	32929279	Exon 11 of BRCA2(+)	Exon 14 of BRCA2(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.4733_c.7289del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16054	60	0	5	9	5
P-0062868-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	16040947	16042316	Intron of NCOR1(-):221bp before exon 14	Intron of NCOR1(-):5bp after exon 12	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.1352+6_c.1408-221del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1369	60	0	29	10	30
P-0062909-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	15498517	21974745	Intron of PSIP1(-):8Kb after exon 3	Exon 1 of CDKN2A(-)	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-3538:CDKN2A_chr9:g.15498517inv	IMPPRECISE		MANUAL_OK	3to3	-	6476228	60	0	65	0	65
P-0049616-T02-IM7	SOMATIC	PLCH2	TNFRSF14	1	1	2430573	2490378	Exon 19 of PLCH2(+)	Intron of TNFRSF14(+):471bp after exon 3	GRCh37	DELETION	PLCH2 (NM_014638) - TNFRSF14 (NM_003820) rearrangement: c.2485:PLCH2_c.304+471:TNFRSF14del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PLCH2:TNFRSF14}	59805	60	0	81	10	84
P-0061952-T01-IM7	SOMATIC	EWSR1	EWSR1	22	22	29684123	32939886	Intron of EWSR1(+):471bp before exon 9	Intron of SYN3(-):2Kb before exon 7	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.812-472:EWSR1_chr22:g.32939886del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	3255763	NA	0	5	0	5
P-0061952-T01-IM7	SOMATIC	KDM6A	KDM6A	X	6	44910863	88566880	Intron of KDM6A(+):90bp before exon 9	5-UTR of LOC101928911(+):55Kb before coding start	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(6;X)(q15;p11.3)(chr6:g.88566880::chrX:g.44910863)	IMPPRECISE		MANUAL_OK	5to5	-	0	NA	0	80	0	92
P-0061953-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55183382	55222169	Intron of EGFR(+):27Kb before exon 2	Intron of EGFR(+):324bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-26597_c.889+324del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	38787	NA	0	34	0	36
P-0062913-T01-IM7	SOMATIC	ATM	ATM	11	11	108173704	108299104	Exon 36 of ATM(+)	Intron of C11orf65(-):3Kb after exon 3	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.5444:ATM_chr11:g.108299104del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	125400	29	0	14	10	21
P-0062918-T01-IM7	SOMATIC	NADK	NADK	2	1	20036892	1691132	IGR: 32Kb before LINC00954(+)	Intron of NADK(-):40bp after exon 4	GRCh37	TRANSLOCATION	NADK (NM_001198994) rearrangement: t(1;2)(p36.33;p.24.1)(chr1:g.1691132::chr2:g.20036892)	PRECISE		MANUAL_OK	5to5	-	0	60	0	35	10	38
P-0062918-T01-IM7	SOMATIC	NPM1	NPM1	5	5	154011960	170818183	IGR: 36Kb before MIR3141(-)	Intron of NPM1(+):125bp before exon 3	GRCh37	INVERSION	NPM1 (NM_002520) rearrangement: c.139-126:NPM1_chr5:g.154011960inv	PRECISE		MANUAL_OK	5to5	-	16806223	60	0	3	9	4
P-0005543-T03-IM7	SOMATIC	CEBPA	CEBPA	19	8	33792797	124102381	Exon 1 of CEBPA(-)	Intron of TBC1D31(+):3Kb before exon 5	GRCh37	TRANSLOCATION	CEBPA (NM_004364) rearrangement: t(8;19)(q24.13;q13.11)(chr8:g.124102381::chr19:g.33792797)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	8	9	8
P-0032909-T06-IM7	SOMATIC	EWSR1	WT1	22	11	29683182	32416950	Intron of EWSR1(+):59bp after exon 8	Intron of WT1(-):852bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416950::chr22:g.29683182)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	86	10	90
P-0042173-T02-IM7	SOMATIC	MDM2	CADM3	12	1	69233222	159155314	Exon 11 of MDM2(+)	Intron of CADM3(+):4Kb before exon 2	GRCh37	TRANSLOCATION	MDM2 (NM_002392) - CADM3 (NM_021189) rearrangement: t(1;12)(q23.2;q15)(chr1:g.159155314::chr12:g.69233222)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {MDM2:CADM3}	0	60	0	20	10	22
P-0058720-T02-IM7	SOMATIC	GAB2	FRK	11	6	77932740	116353557	Exon 8 of GAB2(-)	Intron of FRK(-):28Kb after exon 1	GRCh37	TRANSLOCATION	GAB2 (NM_080491) - FRK (NM_002031) rearrangement: t(6;11)(q22.1;q14.1)(chr6:g.116353557::chr11:g.77932740)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GAB2:FRK}	0	60	0	60	0	66
P-0062522-T01-IM7	SOMATIC	NOTCH1	NOTCH1	13	9	24241606	139399989	Intron of TNFRSF19(+):512bp before exon 6	Exon 25 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;13)(q34.3;q12.12)(chr9:g.139399989::chr13:g.24241606)	PRECISE		MANUAL_OK	5to3	-	0	60	0	80	10	81
P-0062877-T01-IM7	SOMATIC	RB1	RB1	13	13	48921896	49000838	Intron of RB1(+):64bp before exon 5	Intron of RB1(+):26Kb before exon 18	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.501-65_c.1696-26291dup	PRECISE		MANUAL_OK	5to3	Duplication of 13 exons : out of frame	78942	60	0	25	10	25
P-0062931-T01-IM7	SOMATIC	DIS3	DIS3	13	13	73296040	73334103	Intron of MZT1(-):3Kb before exon 2	Intron of DIS3(-):87bp before exon 21	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement: c.2794-87:DIS3_chr13:g.73296040inv	PRECISE		MANUAL_OK	3to3	-	38063	60	0	8	10	8
P-0018453-T05-IM7	SOMATIC	BCL6	BCL6	3	3	108661942	187443445	Intron of GUCA1C(-):10Kb after exon 1	Intron of BCL6(-):28bp before exon 8	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.1709-28:BCL6_chr3:g.108661942inv	IMPPRECISE		MANUAL_OK	3to3	-	78781503	60	0	16	0	16
P-0025139-T02-IM7	SOMATIC	JAK1	INADL	1	1	62509463	65307153	Intron of INADL(+):6Kb after exon 30	Exon 18 of JAK1(-)	GRCh37	INVERSION	JAK1 (NM_002227) - INADL (NM_176877) rearrangement: c.2535:JAK1_c.4032+5742:INADLinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {JAK1:INADL}	2797690	60	0	135	10	151
P-0025139-T02-IM7	SOMATIC	EZH1	EZH1	17	17	40861056	43446153	Intron of EZH1(-):122bp before exon 14	IGR: 25Kb before ARHGAP27(-)	GRCh37	DELETION	EZH1 (NM_001991) rearrangement: c.1494-122:EZH1_chr17:g.43446153del	IMPPRECISE		MANUAL_OK	3to5	-	2585097	60	0	10	0	10
P-0025139-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39910579	42872490	Intron of ERG(-):37Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2374:TMPRSS2_c.39+37007:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2961911	60	0	145	10	152
P-0030044-T03-IM7	SOMATIC	EWSR1	FLI1	22	11	29684176	128653122	Intron of EWSR1(+):418bp before exon 9	Intron of FLI1(+):1Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128653122::chr22:g.29684176)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	60	0	82	10	82
P-0048073-T02-IM7	SOMATIC	SMAD2	SMAD2	18	1	45371698	62818614	Intron of SMAD2(-):12bp after exon 10	IGR: 83Kb before USP1(+)	GRCh37	TRANSLOCATION	SMAD2 (NM_001003652) rearrangement: t(1;18)(p31.3;q21.1)(chr1:g.62818614::chr18:g.45371698)	PRECISE		MANUAL_OK	3to3	-	0	60	0	31	10	31
P-0062412-T02-IM7	SOMATIC	XPO1	XPO1	2	2	61699870	61709573	Promoter of USP34(-):285Kb from tx start	Exon 23 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.2914:XPO1_chr2:g.61699870del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPO1:USP34}	9703	60	0	21	10	21
P-0062725-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52588897	52693968	Intron of PBRM1(-):2bp before exon 27	Intron of PBRM1(-):2Kb before exon 6	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.529-1637_c.4133-2dup	PRECISE		MANUAL_OK	5to3	Duplication of 21 exons : out of frame	105071	56	0	24	10	24
P-0062852-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55202045	55223438	Intron of EGFR(+):8Kb before exon 2	Intron of EGFR(+):84bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-7934_c.890-85del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	21393	60	0	132	0	1812
P-0062938-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55158784	55221958	Intron of EGFR(+):51Kb before exon 2	Intron of EGFR(+):113bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-51195_c.889+113del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	63174	60	0	12	10	12
P-0062952-T01-IM7	SOMATIC	RB1	RB1	13	4	49027194	168217555	Exon 18 of RB1(+)	IGR: 542Kb before SPOCK3(-)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(4;13)(q32.3;q14.2)(chr4:g.168217555::chr13:g.49027194)	PRECISE		MANUAL_OK	5to5	-	0	38	0	25	10	29
P-0062954-T01-IM7	SOMATIC	EPHA5	EPHA5	4	4	66468232	71380017	Intron of EPHA5(-):210bp before exon 3	IGR: 4Kb before AMTN(+)	GRCh37	DELETION	EPHA5 (NM_004439) rearrangement: c.247-210:EPHA5_chr4:g.71380017del	PRECISE		MANUAL_OK	3to5	-	4911785	60	0	10	10	11
P-0062956-T01-IM7	SOMATIC	PDGFRB	PDE6A	5	5	149287997	149512270	Intron of PDE6A(-):1Kb before exon 7	Intron of PDGFRB(-):42bp after exon 7	GRCh37	DELETION	PDGFRB (NM_002609) - PDE6A (NM_000440) rearrangement: c.1127+43:PDGFRB_c.999-1056:PDE6Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PDGFRB:PDE6A}	224273	60	0	68	10	70
P-0062963-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138546229	140482198	Intron of KIAA1549(-):27bp before exon 16	Intron of BRAF(-):622bp after exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4930-27:KIAA1549_c.1314+623:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1935969	60	0	9	10	10
P-0062547-T02-IM7	SOMATIC	BRCA2	BRCA2	13	5	32931774	105346351	Intron of BRCA2(+):104bp before exon 16	IGR: 805Kb before LOC102467213(-)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(5;13)(q21.3;q13.1)(chr5:g.105346351::chr13:g.32931774)	PRECISE		MANUAL_OK	5to5	-	0	60	0	62	10	66
P-0062999-T02-IM7	SOMATIC	EML4	ALK	2	2	29447091	42526326	Intron of ALK(-):697bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2055:EML4_c.3173-697:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079235	60	0	94	10	90
P-0063017-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76926779	76937041	Intron of ATRX(-):5Kb after exon 10	Exon 9 of ATRX(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.3707_c.3809+4942del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10262	60	0	5	10	6
P-0063019-T01-IM7	SOMATIC	NF1	NF1	17	17	29504467	29509846	Intron of NF1(+):4Kb before exon 6	Intron of NF1(+):163bp after exon 8	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.587-3973_c.888+163dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	5379	38	0	6	9	6
P-0063019-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56183508	139098218	Intron of MAP3K1(+):161bp after exon 18	IGR: 23Kb before LOC101929696(-)	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.4257+161:MAP3K1_chr5:g.139098218del	PRECISE		MANUAL_OK	3to5	-	82914710	60	0	4	10	7
P-0063032-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38271558	42341343	Intron of FGFR1(-):17bp before exon 18	5-UTR of SLC20A2(-):66Kb before coding start	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.2280-17:FGFR1_chr8:g.42341343del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {SLC20A2:FGFR1}	4069785	60	0	49	0	94
P-0063034-T01-IM7	SOMATIC	BAP1	BAP1	3	3	52437477	52438615	Exon 13 of BAP1(-)	Intron of BAP1(-):13bp before exon 12	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1117-13_c.1684del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1138	60	0	14	0	14
P-0063039-T01-IM7	SOMATIC	TERT	TERT	5	5	1295405	138945355	Promoter of TERT(-):42Kb from tx start	Intron of UBE2D2(+):4Kb after exon 1	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-301:TERT_chr5:g.138945355inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {TERT:UBE2D2}	137649950	60	0	18	0	19
P-0063040-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	123167556	123239668	IGR: 70Kb before FGFR2(-)	Intron of FGFR2(-):133bp before exon 18	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2302-133:FGFR2_chr10:g.123167556del	PRECISE		MANUAL_OK	3to5	-	72112	60	0	25	10	25
P-0063042-T01-IM7	SOMATIC	CDC73	CDC73	1	1	193064518	193219802	Promoter of GLRX2(-):1Kb from tx start	Intron of CDC73(+):3bp before exon 17	GRCh37	DELETION	CDC73 (NM_024529) rearrangement: c.1560-4:CDC73_chr1:g.193064518del	PRECISE		MANUAL_OK	3to5	-	155284	33	0	6	7	6
P-0063043-T01-IM7	SOMATIC	TSC1	TSC1	9	9	135783479	135786330	Intron of TSC1(-):722bp before exon 13	Intron of TSC1(-):58bp after exon 11	GRCh37	DUPLICATION	TSC1 (NM_000368) rearrangement: c.1141+59_c.1264-722dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2851	60	0	3	9	3
P-0045903-T03-IM7	SOMATIC	ARID1B	ARID1B	17	6	7588011	157383660	5-UTR of TP53(-):15Kb before coding start	Intron of ARID1B(+):22Kb before exon 6	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(6;17)(q25.3;p13.1)(chr6:g.157383660::chr17:g.7588011)	PRECISE		MANUAL_OK	3to5	-	0	60	0	39	10	39
P-0061752-T01-IM7	SOMATIC	ENAH	PARP1	1	1	225784774	226555929	Intron of ENAH(-):30Kb before exon 2	Exon 16 of PARP1(-)	GRCh37	DUPLICATION	ENAH (NM_001008493) - PARP1 (NM_001618) rearrangement: c.6-29658:ENAH_c.2248:PARP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ENAH:PARP1}	771155	60	0	17	10	17
P-0061752-T01-IM7	SOMATIC	ACAT1	ATM	11	11	108002080	108139119	Intron of ACAT1(+):553bp before exon 2	Intron of ATM(+):17bp before exon 18	GRCh37	DELETION	ACAT1 (NM_000019) - ATM (NM_000051) rearrangement: c.73-554:ACAT1_c.2639-18:ATMdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ACAT1:ATM}	137039	60	0	13	10	13
P-0062805-T01-IM7	SOMATIC	NSD1	NSD1	5	5	176709889	176710864	Intron of NSD1(+):307bp after exon 19	Exon 20 of NSD1(+)	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.6009+307_c.6086del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	975	60	0	33	0	33
P-0063022-T01-IM7	SOMATIC	SESN1	SESN1	6	6	103313032	109313819	IGR: 1Mb before GRIK2(+)	Intron of SESN1(-):170bp after exon 7	GRCh37	DELETION	SESN1 (NM_014454) rearrangement: c.1233+171:SESN1_chr6:g.103313032del	PRECISE		MANUAL_OK	3to5	-	6000787	60	0	6	5	6
P-0063025-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52598052	52608758	Intron of PBRM1(-):13bp after exon 24	Intron of PBRM1(-):2Kb after exon 23	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.3616+1799_c.3800+14dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	10706	60	0	40	10	44
P-0063025-T01-IM7	SOMATIC	MDC1	MDC1	6	6	9409195	30673672	IGR: 757Kb before HULC(+)	Exon 10 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.3288:MDC1_chr6:g.9409195inv	PRECISE		MANUAL_OK	5to5	-	21264477	60	0	5	10	7
P-0063026-T01-IM7	SOMATIC	DUSP4	UNC5D	8	8	29197747	35286865	Exon 2 of DUSP4(-)	Intron of UNC5D(+):120Kb before exon 2	GRCh37	INVERSION	DUSP4 (NM_001394) - UNC5D (NM_080872) rearrangement: c.447:DUSP4_c.104-119945:UNC5Dinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {DUSP4:UNC5D}	6089118	60	0	5	10	8
P-0063055-T01-IM7	SOMATIC	EXD3	NOTCH1	9	9	139417471	140284881	Exon 4 of NOTCH1(-)	Intron of EXD3(-):5Kb after exon 2	GRCh37	DELETION	EXD3 (NM_017820) - NOTCH1 (NM_017617) rearrangement: c.55+4874:EXD3_c.573:NOTCH1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EXD3:NOTCH1}	867410	60	0	21	10	21
P-0030279-T03-IM7	SOMATIC	EWSR1	FLI1	22	11	29684687	128662512	Exon 9 of EWSR1(+)	Intron of FLI1(+):11Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128662512::chr22:g.29684687)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	60	0	120	10	168
P-0043339-T02-IM7	SOMATIC	SMARCA2	SMARCA2	9	9	1575827	2104045	IGR: 439Kb before SMARCA2(+)	Exon 23 of SMARCA2(+)	GRCh37	DELETION	SMARCA2 (NM_003070) rearrangement: chr9:g.1575827_c.3168:SMARCA2del	PRECISE		MANUAL_OK	3to5	-	528218	60	0	33	10	33
P-0059442-T04-IM7	SOMATIC	MAP3K14	MAP3K14	18	17	65595072	43344127	IGR: 411Kb before LOC643542(+)	Intron of MAP3K14(-):79bp before exon 14	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;18)(q21.31;q22.1)(chr17:g.43344127::chr18:g.65595072)	PRECISE		MANUAL_OK	5to3	-	0	60	0	160	10	156
P-0062725-T04-IM7	SOMATIC	PBRM1	PBRM1	3	3	52588897	52693968	Intron of PBRM1(-):2bp before exon 27	Intron of PBRM1(-):2Kb before exon 6	GRCh37	DUPLICATION	PBRM1 (NM_018313) rearrangement: c.529-1637_c.4133-2dup	PRECISE		MANUAL_OK	5to3	Duplication of 21 exons : out of frame	105071	60	0	15	10	15
P-0062996-T02-IM7	SOMATIC	ERCC4	ERCC4	16	16	14031746	20514824	Intron of ERCC4(+):31bp after exon 9	IGR: 33Kb before ACSM2B(-)	GRCh37	DELETION	ERCC4 (NM_005236) rearrangement: c.1904+31:ERCC4_chr16:g.20514824del	PRECISE		MANUAL_OK	3to5	-	6483078	60	0	2	9	3
P-0063098-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44891178	44944975	Intron of KDM6A(+):3Kb before exon 7	Intron of KDM6A(+):134bp before exon 24	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.565-2998_c.3434-135del	PRECISE		MANUAL_OK	3to5	Deletion of 17 exons : out of frame	53797	60	0	9	10	10
P-0063099-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875198	42870306	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):190bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG (NM_004449): c.56-190:TMPRSS2_c.40-57654:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2995108	60	0	56	10	58
P-0063126-T01-IM7	SOMATIC	RB1	RB1	13	13	48921892	48947584	Intron of RB1(+):68bp before exon 5	Exon 12 of RB1(+)	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.501-69_c.1171dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	25692	60	0	21	10	21
P-0063126-T01-IM7	SOMATIC	PALB2	PALB2	16	16	23641927	23647256	Intron of PALB2(-):137bp before exon 5	Exon 4 of PALB2(-)	GRCh37	DUPLICATION	PALB2 (NM_024675) rearrangement: c.611_c.1685-137dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5329	60	0	36	10	38
P-0063128-T01-IM7	SOMATIC	CSDE1	CSDE1	1	1	115262430	116944848	Intron of CSDE1(-):67bp before exon 19	Intron of ATP1A1(+):571bp after exon 21	GRCh37	DELETION	CSDE1 (NM_001242891) rearrangement: c.2191-67:CSDE1_chr1:g.116944848del	IMPPRECISE		MANUAL_OK	3to5	-	1682418	60	0	11	0	14
P-0063128-T01-IM7	SOMATIC	PAX5	ADAMTSL1	9	9	18861632	36882145	Intron of ADAMTSL1(+):26Kb before exon 24	Intron of PAX5(-):43bp before exon 8	GRCh37	INVERSION	PAX5 (NM_016734) - ADAMTSL1 (NM_001040272) rearrangement: c.911-43:PAX5_c.4250-26197:ADAMTSL1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PAX5:ADAMTSL1}	18020513	60	0	23	10	26
P-0063135-T01-IM7	SOMATIC	DOT1L	DOT1L	19	8	2226584	55293489	Exon 27 of DOT1L(+)	IGR: 77Kb before SOX17(+)	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(8;19)(q11.23;p13.3)(chr8:g.55293489::chr19:g.2226584)	PRECISE		MANUAL_OK	5to3	-	0	60	0	38	10	39
P-0063135-T01-IM7	SOMATIC	WHSC1	WHSC1	4	4	1944061	1945410	Intron of WHSC1(+):3Kb after exon 9	Intron of WHSC1(+):4Kb after exon 9	GRCh37	INVERSION	WHSC1 (NM_001042424) rearrangement: c.1881+2556_c.1881+3905inv	PRECISE		MANUAL_OK	5to5	-	1349	60	0	17	10	20
P-0063142-T01-IM7	SOMATIC	EGFR	PCDH15	10	7	56187463	55221820	Intron of PCDH15(-):49Kb before exon 5	Exon 7 of EGFR(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) - PCDH15 (NM_001142763) rearrangement: t(7;10)(p11.2;q21.1)(chr7:g.55221820::chr10:g.56187463)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EGFR:PCDH15}	0	60	0	66	10	65
P-0063149-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39869552	42876365	Intron of ERG(-):734bp after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3512:TMPRSS2_c.18+735:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006813	60	0	52	10	54
P-0052682-T03-IM7	SOMATIC	Note	Note	19	6	6213329	147146787	Intron of MLLT1(-):18bp after exon 11	IGR: 16Kb before STXBP5-AS1(-)	GRCh37	TRANSLOCATION	Note: MLLT1 (NM_005934) rearrangement: t(19;6)(p13.3;q24.3)(chr19:g.6213329::chr6:g.147146787)	PRECISE		MANUAL_OK	5to3	-	0	60	0	8	10	9
P-0061448-T02-IM7	SOMATIC	EZH1	EZH1	17	17	40855191	40864305	Intron of EZH1(-):212bp before exon 20	Intron of EZH1(-):1bp after exon 12	GRCh37	INVERSION	EZH1 (NM_001991) rearrangement: c.1401+2_c.2099-212inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	9114	58	0	9	10	14
P-0061666-T03-IM7	SOMATIC	ARID1A	ARID1A	1	1	27055163	27097755	Intron of ARID1A(+):978bp before exon 2	Exon 12 of ARID1A(+)	GRCh37	INVERSION	ARID1A (NM_006015) rearrangement: c.1138-979_c.3344inv	IMPPRECISE		MANUAL_OK	5to5	-	42592	60	0	6	0	6
P-0061666-T03-IM7	SOMATIC	ELF3	ELF3	1	1	201977244	201980884	Promoter of ELF3(+):2Kb from tx start	Intron of ELF3(+):200bp before exon 3	GRCh37	DELETION	ELF3 (NM_004433) rearrangement: c.164-201:ELF3_chr1:g.201977244del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3640	60	0	12	6	12
P-0063096-T03-IM7	SOMATIC	PTPRS	PPAN	19	19	5238680	10220078	Intron of PTPRS(-):249bp after exon 13	Intron of PPAN-P2RY11(+):228bp before exon 6	GRCh37	INVERSION	PTPRS (NM_002850) - PPAN-P2RY11 (NM_001040664) rearrangement: c.1849+250:PTPRS_c.514-229:PPAN-P2RY11inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PTPRS:PPAN-P2RY11}	4981398	60	0	10	10	10
P-0063289-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48593443	48595666	Exon 10 of SMAD4(+)	Intron of SMAD4(+):2Kb after exon 10	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1194_c.1308+2109del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2223	60	0	14	10	14
P-0063289-T01-IM7	SOMATIC	INSR	INSR	19	19	7267833	48394400	Exon 2 of INSR(-)	IGR: 17Kb before SNAR-A12(+)	GRCh37	DELETION	INSR (NM_000208) rearrangement: c.175:INSR_chr19:g.48394400del	PRECISE		MANUAL_OK	3to5	-	41126567	60	0	18	10	18
P-0063290-T01-IM7	SOMATIC	MALT1	MALT1	18	18	54972290	56339008	IGR: 47Kb before ST8SIA3(+)	Exon 1 of MALT1(+)	GRCh37	DELETION	MALT1 (NM_006785) rearrangement: c.133:MALT1_chr18:g.54972290del	PRECISE		MANUAL_OK	3to5	-	1366718	60	0	10	10	10
P-0063301-T01-IM7	SOMATIC	PREX2	TMPRSS2	21	8	42852468	68911596	Exon 6 of TMPRSS2(-)	Intron of PREX2(+):18Kb before exon 2	GRCh37	TRANSLOCATION	PREX2 (NM_024870) - TMPRSS2 (NM_001135099) rearrangement: t(8;21)(q13.2;q22.3)(chr8:g.68911596::chr21:g.42852468)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PREX2:TMPRSS2}	0	60	0	6	0	6
P-0063302-T01-IM7	SOMATIC	CALR	CALR	19	19	13050131	13054310	Intron of CALR(+):82bp after exon 2	Intron of CALR(+):40bp before exon 8	GRCh37	DUPLICATION	CALR (NM_004343) rearrangement: c.193+82_c.961-41dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	4179	60	0	5	0	5
P-0063305-T01-IM7	SOMATIC	FANCA	FANCA	16	16	89828353	89829800	Intron of FANCA(-):3bp after exon 29	Intron of FANCA(-):1Kb before exon 29	GRCh37	INVERSION	FANCA (NM_000135) rearrangement: c.2779-1370_c.2852+4inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1447	60	0	30	10	33
P-0063200-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2110051	2110747	Intron of TSC2(+):619bp before exon 11	Exon 11 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.976-620_c.1052del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	696	60	0	30	0	30
P-0063201-T01-IM7	SOMATIC	ADAMTSL1	PTPRD	9	9	8331754	18742944	Intron of PTPRD(-):18bp before exon 44	Intron of ADAMTSL1(+):10Kb before exon 16	GRCh37	INVERSION	ADAMTSL1 (NM_001040272) - PTPRD (NM_002839) rearrangement: c.2007-10352:ADAMTSL1_c.5380-18:PTPRDinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ADAMTSL1:PTPRD}	10411190	60	0	11	10	11
P-0063282-T01-IM7	SOMATIC	BIRC3	BIRC3	11	11	68892322	102196258	IGR: 22Kb before LOC338694(-)	Exon 4 of BIRC3(+)	GRCh37	DELETION	BIRC3 (NM_182962) rearrangement: c.915:BIRC3_chr11:g.68892322del	PRECISE		MANUAL_OK	3to5	-	33303936	60	0	23	10	24
P-0063278-T01-IM7	SOMATIC	NTRK3	NTRK3	15	5	88799154	33787312	Exon 3 of NTRK3(-)	Intron of ADAMTS12(-):36Kb before exon 3	GRCh37	TRANSLOCATION	NTRK3 (NM_001012338) rearrangement: t(5;15)(p13.3;q25.3)(chr5:g.33787312::chr15:g.88799154)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	156	10	210
P-0063306-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39708907	39710242	Intron of TOP1(+):87bp after exon 6	Intron of TOP1(+):362bp after exon 7	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.431+87_c.507+362del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1335	60	0	34	10	34
P-0063306-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1732707	1808764	Intron of TACC3(+):18bp after exon 5	Intron of FGFR3(+):78bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-79:FGFR3_c.1461+18:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	76057	60	0	115	10	120
P-0024845-T05-IM7	SOMATIC	EWSR1	WT1	22	11	29684464	32417412	Intron of EWSR1(+):130bp before exon 9	Intron of WT1(-):390bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417412::chr22:g.29684464)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	82	10	82
P-0036106-T03-IM7	SOMATIC	EML4	ALK	2	2	29446930	42526326	Intron of ALK(-):536bp before exon 20	Intron of EML4(+):2Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2055:EML4_c.3173-536:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13079396	60	0	189	10	189
P-0043364-T06-IM7	SOMATIC	DICER1	DICER1	14	14	95582031	95594496	Exon 11 of DICER1(-)	Intron of DICER1(-):1Kb after exon 6	GRCh37	DELETION	DICER1 (NM_030621) rearrangement: c.734+1313_c.1880del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12465	60	0	40	10	41
P-0043364-T06-IM7	SOMATIC	TRAF7	TRAF7	17	16	74479057	2222466	5-UTR of RHBDF2(-):11Kb before coding start	Exon 9 of TRAF7(+)	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) rearrangement: t(16;17)(p13.3;q25.1)(chr16:g.2222466::chr17:g.74479057)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRAF7:RHBDF2}	0	59	0	121	10	123
P-0051534-T02-IM7	SOMATIC	TP53	TP53	17	17	7573765	7578119	Intron of TP53(-):161bp after exon 10	Intron of TP53(-):57bp after exon 6	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+58_c.1100+162del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	4354	60	0	7	0	9
P-0055679-T03-IM7	SOMATIC	DNMT3A	DTNB	2	2	25458664	25784692	Exon 22 of DNMT3A(-)	Intron of DTNB(-):15Kb after exon 8	GRCh37	DUPLICATION	DNMT3A (NM_022552) - DTNB (NM_021907) rearrangement: c.2509:DNMT3A_c.876+15015:DTNBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DNMT3A:DTNB}	326028	60	0	45	10	45
P-0058582-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29684343	32414909	Intron of EWSR1(+):251bp before exon 9	Intron of WT1(-):608bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414909::chr22:g.29684343)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	67	10	66
P-0062147-T02-IM7	SOMATIC	EP300	EP300	22	22	24104513	41573332	Promoter of C22orf15(+):694bp from tx start	Exon 31 of EP300(+)	GRCh37	INVERSION	EP300 (NM_001429) rearrangement: c.5617:EP300_chr22:g.24104513inv	PRECISE		MANUAL_OK	5to5	-	17468819	42	0	17	10	17
P-0063217-T01-IM7	SOMATIC	BCL10	BCL10	1	1	85733342	87671396	Exon 3 of BCL10(-)	IGR: 7Kb before LOC101927844(+)	GRCh37	INVERSION	BCL10 (NM_003921) rearrangement: c.670:BCL10_chr1:g.87671396inv	IMPPRECISE		MANUAL_OK	5to5	-	1938054	60	0	6	0	6
P-0063217-T01-IM7	SOMATIC	RPTOR	RPTOR	20	17	32290912	78811809	3-UTR of PXMP4(-):5Kb after coding stop	Intron of RPTOR(+):12bp after exon 10	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(17;20)(q25.3;q11.22)(chr17:g.78811809::chr20:g.32290912)	IMPPRECISE		MANUAL_OK	5to3	-	0	60	0	13	0	13
P-0063222-T01-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72830663	72895941	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-):28Kb after exon 4	GRCh37	DUPLICATION	ZFHX3 (NM_006885) rearrangement: c.3448+27689_c.5918dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	65278	60	0	6	7	6
P-0063222-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39893842	42867008	Intron of ERG(-):54Kb after exon 3	Intron of TMPRSS2(-):503bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-503:TMPRSS2_c.39+53744:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2973166	60	0	11	0	10
P-0063224-T01-IM7	SOMATIC	TBX3	TBX3	12	12	115119042	115590310	Intron of TBX3(-):91bp before exon 2	IGR: 482Kb before TBX3(-)	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.390-91:TBX3_chr12:g.115590310del	PRECISE		MANUAL_OK	3to5	-	471268	60	0	37	10	38
P-0063225-T01-IM7	SOMATIC	NF1	NF1	17	17	29487182	29590985	Intron of NF1(+):1Kb after exon 3	Intron of NF1(+):1Kb before exon 35	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.288+1071_c.4725-1262del	PRECISE		MANUAL_OK	3to5	Deletion of 31 exons : out of frame	103803	60	0	5	8	5
P-0063225-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38273389	59819971	Exon 14 of FGFR1(-)	Intron of TOX(-):32Kb after exon 3	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.1946:FGFR1_chr8:g.59819971inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	21546582	60	0	153	10	186
P-0063229-T01-IM7	SOMATIC	MAP2K1	MAP2K1	15	15	66733869	66735684	Intron of MAP2K1(+):2Kb before exon 4	Exon 4 of MAP2K1(+)	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement: c.439-1749_c.505del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1815	53	0	5	10	5
P-0063229-T01-IM7	SOMATIC	EWSR1	EWSR1	22	19	29683743	32986108	Intron of EWSR1(+):620bp after exon 8	IGR: 86Kb before PDCD5(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(19;22)(q13.11;q12.2)(chr19:g.32986108::chr22:g.29683743)	PRECISE		MANUAL_OK	3to3	-	0	60	0	8	10	8
P-0063318-T01-IM7	SOMATIC	XPNPEP3	EP300	22	22	41314062	41573748	Intron of XPNPEP3(+):4Kb after exon 7	Exon 31 of EP300(+)	GRCh37	DELETION	XPNPEP3 (NM_022098) - EP300 (NM_001429) rearrangement: c.1055+3734:XPNPEP3_c.6033:EP300del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPNPEP3:EP300}	259686	55	0	59	10	60
P-0063320-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	5467968	8607875	3-UTR of CD274(+):12Kb after coding stop	Intron of PTPRD(-):25Kb after exon 14	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.352+25442:PTPRD_chr9:g.5467968del	IMPPRECISE		MANUAL_OK	3to5	-	3139907	60	0	36	0	39
P-0063321-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	36247900	36265152	Intron of RUNX1(-):5Kb after exon 5	Intron of RUNX1(-):69bp after exon 3	GRCh37	DELETION	RUNX1 (NM_001754) rearrangement: c.97+70_c.508+4954del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	17252	60	0	26	10	26
P-0063322-T01-IM7	SOMATIC	NDUFB3	CASP8	2	2	201947040	202136271	Intron of NDUFB3(+):3Kb before exon 3	Exon 3 of CASP8(+)	GRCh37	DELETION	NDUFB3 (NM_002491) - CASP8 (NM_001080125) rearrangement: c.141-3142:NDUFB3_c.515:CASP8del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NDUFB3:CASP8}	189231	56	0	5	10	5
P-0063326-T01-IM7	SOMATIC	RASA1	RASA1	5	5	86675933	86677042	Intron of RASA1(+):266bp after exon 19	Intron of RASA1(+):630bp after exon 20	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2603+266_c.2690+630del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1109	60	0	5	9	4
P-0063328-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	9769882	15276874	Intron of ZNF562(-):172bp after exon 3	Exon 30 of NOTCH3(-)	GRCh37	INVERSION	NOTCH3 (NM_000435) rearrangement: c.5391:NOTCH3_chr19:g.9769882inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5506992	27	0	49	10	67
P-0063366-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974822	22483594	Exon 1 of CDKN2A(-)	IGR: 37Kb before DMRTA1(+)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3615:CDKN2A_chr9:g.22483594del	PRECISE		MANUAL_OK	3to5	-	508772	60	0	4	7	4
P-0063368-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89717735	89723095	Exon 7 of PTEN(+)	Intron of PTEN(+):2Kb before exon 9	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.760_c.1027-1949dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5360	60	0	22	10	23
P-0063368-T01-IM7	SOMATIC	POLD1	POLD1	19	12	50912455	4809173	Exon 16 of POLD1(+)	Promoter of LOC101929549(-):409bp from tx start	GRCh37	TRANSLOCATION	POLD1 (NM_002691) rearrangement: t(12;19)(p13.32;q13.33)(chr12:g.4809173::chr19:g.50912455)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {POLD1:LOC101929549}	0	60	0	12	10	12
P-0063368-T01-IM7	SOMATIC	FXR1	PIK3CA	3	3	178947717	180681739	Intron of PIK3CA(+):74bp before exon 19	Intron of FXR1(+):861bp after exon 13	GRCh37	DUPLICATION	FXR1 (NM_005087) - PIK3CA (NM_006218) rearrangement: c.1198+861:FXR1_c.2667-75:PIK3CAdup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {FXR1:PIK3CA}	1734022	60	0	6	0	6
P-0063370-T01-IM7	SOMATIC	ERBB2	ERBB2	17	17	37876333	37879977	Intron of ERBB2(+):246bp after exon 16	Intron of ERBB2(+):64bp after exon 18	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.1946+246_c.2208+64inv	IMPPRECISE		MANUAL_OK	5to5	-	3644	60	0	3	0	3
P-0063371-T01-IM7	SOMATIC	MAPK3	MAPK3	17	16	73628522	30133379	Intron of RECQL5(-):774bp before exon 9	Intron of MAPK3(-):52bp before exon 2	GRCh37	TRANSLOCATION	MAPK3 (NM_002746) rearrangement: t(16;17)(p11.2;q25.1)(chr16:g.30133379::chr17:g.73628522)	PRECISE		MANUAL_OK	3to3	-	0	60	0	36	10	36
P-0063377-T01-IM7	SOMATIC	POLE	POLE	12	12	53162136	133242026	3-UTR of KRT76(-):360bp after coding stop	Exon 21 of POLE(-)	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.2330:POLE_chr12:g.53162136inv	IMPPRECISE		MANUAL_OK	3to3	-	80079890	60	0	1001	0	3088
P-0063378-T01-IM7	SOMATIC	FGFR2	FGFR2	10	6	123242910	127688351	Intron of FGFR2(-):301bp after exon 17	IGR: 71Kb before SOGA3(-)	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(6;10)(q22.33;q26.13)(chr6:g.127688351::chr10:g.123242910)	PRECISE		MANUAL_OK	5to3	-	0	60	0	75	10	77
P-0063392-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974682	24043410	Exon 1 of CDKN2A(-)	IGR: 353Kb before ELAVL2(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3475:CDKN2A_chr9:g.24043410del	PRECISE		MANUAL_OK	3to5	-	2068728	60	0	27	10	27
P-0063397-T01-IM7	SOMATIC	MSH6	MSH6	2	2	48032263	48049044	Intron of MSH6(+):97bp after exon 6	Intron of FBXO11(-):312bp after exon 13	GRCh37	DELETION	MSH6 (NM_000179) rearrangement: c.3556+97:MSH6_chr2:g.48049044del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	16781	60	0	20	10	20
P-0021044-T02-IM7	SOMATIC	PTPRT	PTPRT	20	6	40744090	14748323	Intron of PTPRT(-):135bp before exon 23	IGR: 468Kb before LINC01108(-)	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(6;20)(p23;q12)(chr6:g.14748323::chr20:g.40744090)	IMPPRECISE		MANUAL_OK	3to3	-	0	60	0	5	0	5
P-0021044-T02-IM7	SOMATIC	TAP1	TAP1	6	6	28495308	32821028	Intron of GPX5(+):1Kb after exon 1	Exon 1 of TAP1(-)	GRCh37	DELETION	TAP1 (NM_000593) rearrangement: c.566:TAP1_chr6:g.28495308del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4325720	60	0	36	10	36
P-0011364-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876280	42877202	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2675:TMPRSS2_c.40-58736:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000922	60	0	59	10	60
P-0039257-T03-IM7	SOMATIC	KIF5B	RET	10	10	32316224	43610060	Intron of KIF5B(-):1Kb after exon 15	Exon 11 of RET(+)	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1132:KIF5B_c.2012:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {KIF5B:RET}	11293836	60	0	121	10	138
P-0039257-T03-IM7	SOMATIC	B2M	B2M	15	15	45002843	45003770	Promoter of B2M(+):841bp from tx start	Exon 1 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.26:B2M_chr15:g.45002843del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	927	60	0	89	0	102
P-0039257-T03-IM7	SOMATIC	FGFR3	SMIM14	4	4	1809167	39579443	3-UTR of FGFR3(+):14Kb after coding stop	Intron of SMIM14(-):5Kb before exon 3	GRCh37	INVERSION	FGFR3 (NM_000142) -SMIM14 (NM_174921) inversion: c.*178C>T:FGFR3_c.76-5360:SMIM14inv	PRECISE		MANUAL_OK	3to3	-	37770276	60	0	325	10	326
P-0049520-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40822873	42874915	5-UTR of SH3BGR(+):12Kb before coding start	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.56-4799:TMPRSS2_chr21:g.40822873inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {SH3BGR:TMPRSS2}	2052042	60	0	7	10	7
P-0049520-T02-IM7	SOMATIC	TP63	TP63	3	3	189455554	190865940	Exon 2 of TP63(+)	IGR: 64Kb before OSTN(+)	GRCh37	DELETION	TP63 (NM_003722) rearrangement: c.88:TP63_chr3:g.190865940del	PRECISE		MANUAL_OK	3to5	-	1410386	60	0	8	9	8
P-0053403-T02-IM7	SOMATIC	ESR1	PACRG	6	6	152323036	163445325	Intron of ESR1(+):10Kb before exon 6	Intron of PACRG(+):38Kb before exon 4	GRCh37	DELETION	ESR1 (NM_001122740) - PACRG (NM_152410) rearrangement: c.1097-9755:ESR1_c.292-37857:PACRGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ESR1:PACRG}	11122289	60	0	5	0	5
P-0058090-T04-IM7	SOMATIC	NTRK1	CADM3	1	1	156836298	159146955	Intron of NTRK1(+):403bp before exon 4	Intron of CADM3(+):5Kb after exon 1	GRCh37	DELETION	NTRK1 (NM_002529) - CADM3 (NM_021189) rearrangement: c.360-404:NTRK1_c.88+5312:CADM3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NTRK1:CADM3}	2310657	60	0	8	8	9
P-0060891-T02-IM7	SOMATIC	FGFR1	FGFR1	13	8	84244662	38271631	IGR: 207Kb before SLITRK1(-)	Intron of FGFR1(-):38bp after exon 17	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) rearrangement: t(8;13)(p11.23;q31.1)(chr8:g.38271631::chr13:g.84244662)	PRECISE		MANUAL_OK	5to3	-	0	60	0	30	10	30
P-0062109-T02-IM7	SOMATIC	FOXO1	FOXO1	13	13	34957800	41134275	IGR: 52Kb before LINC00457(-)	Exon 2 of FOXO1(-)	GRCh37	DELETION	FOXO1 (NM_002015) rearrangement: c.1353:FOXO1_chr13:g.34957800del	PRECISE		MANUAL_OK	3to5	-	6176475	34	0	2	5	2
P-0062142-T03-IM7	SOMATIC	EWSR1	FLI1	22	11	29685696	128644385	Intron of EWSR1(+):921bp after exon 9	Intron of FLI1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128644385::chr22:g.29685696)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	106	10	107
P-0062729-T02-IM7	SOMATIC	BRAF	BRAF	11	7	124656623	140487966	Intron of MSANTD2(-):12Kb before exon 2	Intron of BRAF(-):582bp before exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;11)(q34;q24.2)(chr7:g.140487966::chr11:g.124656623)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	32	10	33
P-0062820-T02-IM7	SOMATIC	CHEK2	CHEK2	22	22	29089480	29092847	Intron of CHEK2(-):539bp after exon 13	Intron of CHEK2(-):41bp after exon 10	GRCh37	DELETION	CHEK2 (NM_007194) rearrangement: c.1095+42_c.1461+540del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	3367	60	0	7	10	20
P-0062985-T02-IM7	SOMATIC	EML4	ALK	2	2	29447199	42496432	Intron of ALK(-):805bp before exon 20	Intron of EML4(+):5Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+4561:EML4_c.3173-805:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13049233	60	0	14	10	14
P-0063415-T01-IM7	SOMATIC	LATS1	LATS1	6	6	149982915	150675765	Exon 8 of LATS1(-)	IGR: 14Kb before IYD(+)	GRCh37	INVERSION	LATS1 (NM_004690) rearrangement: c.3343:LATS1_chr6:g.150675765inv	PRECISE		MANUAL_OK	5to5	-	692850	60	0	26	10	27
P-0063424-T01-IM7	SOMATIC	CCND2	CCND2	12	12	4398097	5134478	Exon 4 of CCND2(+)	IGR: 19Kb before KCNA5(+)	GRCh37	INVERSION	CCND2 (NM_001759) rearrangement: c.661:CCND2_chr12:g.5134478inv	PRECISE		MANUAL_OK	3to3	-	736381	60	0	58	10	57
P-0063424-T01-IM7	SOMATIC	MSI1	CIT	12	12	120286916	120791066	Intron of CIT(-):1Kb after exon 5	Intron of MSI1(-):35bp after exon 10	GRCh37	DELETION	MSI1 (NM_002442) - CIT (NM_001206999) rearrangement: c.733+36:MSI1_c.516+1062:CITdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MSI1:CIT}	504150	60	0	28	0	28
P-0063424-T01-IM7	SOMATIC	TRAPPC9	AGO2	8	8	141399557	141549644	Intron of TRAPPC9(-):8Kb after exon 7	Intron of AGO2(-):91bp before exon 16	GRCh37	DUPLICATION	TRAPPC9 (NM_031466) - AGO2 (NM_012154) rearrangement: c.1428+8162:TRAPPC9_c.2035-91:AGO2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TRAPPC9:AGO2}	150087	60	0	21	10	22
P-0063437-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55270113	55271518	Intron of EGFR(+):96bp before exon 27	Intron of EGFR(+):1Kb after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3163-97_c.3271+1200del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1405	60	0	10	0	336
P-0063439-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140453155	140690890	Exon 15 of BRAF(-)	IGR: 15Kb before MRPS33(-)	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1780:BRAF_chr7:g.140690890del	PRECISE		MANUAL_OK	3to5	-	237735	60	0	15	10	16
P-0063443-T01-IM7	SOMATIC	PBRM1	PBRM1	3	3	52621512	52703615	Intron of PBRM1(-):61bp before exon 20	Intron of PBRM1(-):954bp before exon 4	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.237-954_c.2966-61del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 16 exons : out of frame	82103	60	0	6	0	6
P-0063444-T01-IM7	SOMATIC	AIRE	TMPRSS2	21	21	42861585	45713450	Intron of TMPRSS2(-):65bp before exon 4	Intron of AIRE(+):221bp before exon 11	GRCh37	INVERSION	AIRE (NM_000383) - TMPRSS2 (NM_001135099) rearrangement: c.1279-222:AIRE_c.350-65:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {AIRE:TMPRSS2}	2851865	60	0	21	10	21
P-0063444-T01-IM7	SOMATIC	ICOSLG	ICOSLG	21	21	44235939	45651084	IGR: 27Kb before WDR4(-)	Intron of ICOSLG(-):78bp after exon 5	GRCh37	DELETION	ICOSLG (NM_015259) rearrangement: c.862+79:ICOSLG_chr21:g.44235939del	PRECISE		MANUAL_OK	3to5	-	1415145	60	0	19	10	19
P-0063446-T01-IM7	SOMATIC	TERT	TERT	5	2	1295571	43495673	Promoter of TERT(-):42Kb from tx start	Intron of THADA(-):11Kb after exon 36	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(2;5)(p21;p15.33)(chr2:g.43495673::chr5:g.1295571)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {THADA:TERT}	0	60	0	52	10	52
P-0063448-T01-IM7	SOMATIC	NF1	ADAP2	17	17	29263189	29497199	Intron of ADAP2(+):2Kb after exon 5	Intron of NF1(+):184bp after exon 5	GRCh37	DUPLICATION	NF1 (NM_001042492) - ADAP2 (NM_018404) rearrangement: c.586+184:NF1_c.510+1874:ADAP2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NF1:ADAP2}	234010	39	0	7	10	7
P-0063449-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	15950251	15951899	Intron of NCOR1(-):13bp after exon 42	Intron of NCOR1(-):259bp after exon 41	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.6536+260_c.6679+14del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1648	60	0	13	10	13
P-0063463-T01-IM7	SOMATIC	RAB8B	TP53	17	15	7579526	63482755	Exon 4 of TP53(-)	Intron of RAB8B(+):808bp after exon 1	GRCh37	TRANSLOCATION	RAB8B (NM_016530) - TP53 (NM_000546) rearrangement: t(15;17)(q22.2;p13.1)(chr15:g.63482755::chr17:g.7579526)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RAB8B:TP53}	0	60	0	47	0	47
P-0063479-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27089310	27105353	Intron of ARID1A(+):153bp before exon 8	Intron of ARID1A(+):160bp before exon 20	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2420-154_c.5125-161del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : out of frame	16043	60	0	3	10	3
P-0063481-T01-IM7	SOMATIC	FOXO1	FOXO1	13	13	38377142	41134232	5-UTR of TRPC4(-):166Kb before coding start	Exon 2 of FOXO1(-)	GRCh37	INVERSION	FOXO1 (NM_002015) rearrangement: c.1396:FOXO1_chr13:g.38377142inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	2757090	60	0	14	0	16
P-0063526-T01-IM7	SOMATIC	TP53	TP53	17	17	7579511	7580525	Exon 4 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.176:TP53_chr17:g.7580525del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1014	59	0	46	0	47
P-0063578-T01-IM7	SOMATIC	SOS1	SOS1	2	2	37665268	39278285	IGR: 94Kb before QPCT(+)	Exon 6 of SOS1(-)	GRCh37	DELETION	SOS1 (NM_005633) rearrangement: c.864:SOS1_chr2:g.37665268del	PRECISE		MANUAL_OK	3to5	-	1613017	60	0	30	10	31
P-0063580-T01-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50490792	70060882	Intron of SMARCD1(+):37bp after exon 11	Intron of BEST3(-):4Kb after exon 7	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement: c.1392+37:SMARCD1_chr12:g.70060882del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	19570090	60	0	30	10	30
P-0063580-T01-IM7	SOMATIC	DROSHA	DROSHA	X	5	137545161	31410894	IGR: 152Kb before LINC00889(-)	Exon 30 of DROSHA(-)	GRCh37	TRANSLOCATION	DROSHA (NM_013235) rearrangement: t(5;X)(p13.3;q26.3)(chr5:g.31410894::chrX:g.137545161)	IMPPRECISE		MANUAL_OK	5to5	-	0	60	0	7	0	10
P-0063582-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39877640	42867997	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1492:TMPRSS2_c.40-60096:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2990357	60	0	89	10	89
P-0063584-T01-IM7	SOMATIC	ACPP	AXL	19	3	41748483	132079395	Intron of AXL(+):304bp before exon 11	Intron of ACPP(+):4Kb after exon 10	GRCh37	TRANSLOCATION	ACPP (NM_001134194) - AXL (NM_021913) rearrangement: t(3;19)(q22.1;q13.2)(chr3:g.132079395::chr19:g.41748483)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ACPP:AXL}	0	60	0	7	8	7
P-0063585-T01-IM7	SOMATIC	EML4	ALK	2	2	29446884	42505177	Intron of ALK(-):490bp before exon 20	Intron of EML4(+):3Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2813:EML4_c.3173-490:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13058293	60	0	23	10	23
P-0063587-T01-IM7	SOMATIC	SMAD3	SMAD3	15	15	67482866	67487758	Exon 9 of SMAD3(+)	Promoter of SMAD3(+):130Kb from tx start	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.1270:SMAD3_chr15:g.67487758del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4892	60	0	36	10	36
P-0063588-T01-IM7	SOMATIC	KLF4	KLF4	17	9	54991738	110250132	Promoter of TRIM25(-):26Kb from tx start	Exon 3 of KLF4(-)	GRCh37	TRANSLOCATION	KLF4 (NM_004235) rearrangement: t(9;17)(q31.2;q22)(chr9:g.110250132::chr17:g.54991738)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TRIM25:KLF4}	0	60	0	19	10	20
P-0063588-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48589246	48591962	Intron of SMAD4(+):3Kb before exon 9	Exon 9 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.956-2547_c.1125del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2716	60	0	6	0	6
P-0063590-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39839375	42868026	Intron of ERG(-):22Kb before exon 2	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1521:TMPRSS2_c.19-21831:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3028651	60	0	44	10	45
P-0063607-T01-IM7	SOMATIC	SMYD3	HHAT	1	1	210782890	246498605	Intron of HHAT(+):14Kb before exon 10	Intron of SMYD3(-):63bp after exon 3	GRCh37	INVERSION	SMYD3 (NM_001167740) - HHAT (NM_001122834) rearrangement: c.336+64:SMYD3_c.1246-13980:HHATinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SMYD3:HHAT}	35715715	52	0	6	0	6
P-0063620-T01-IM7	SOMATIC	NF1	NF1	17	17	29557201	29565113	Intron of NF1(+):76bp before exon 23	Intron of NF1(+):2Kb after exon 29	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.2991-77_c.3974+2074dup	PRECISE		MANUAL_OK	5to3	Duplication of 7 exons : in frame	7912	57	0	48	10	49
P-0063620-T01-IM7	SOMATIC	NF2	EWSR1	22	22	29670369	30035301	Intron of EWSR1(+):98bp after exon 5	Intron of NF2(+):100bp after exon 3	GRCh37	DUPLICATION	NF2 (NM_000268) - EWSR1 (NM_013986) rearrangement: c.363+100:NF2_c.244+98:EWSR1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NF2:EWSR1}	364932	60	0	90	10	96
P-0063623-T01-IM7	SOMATIC	TP53	TP53	17	17	7577909	7585821	Intron of TP53(-):267bp after exon 6	5-UTR of TP53(-):13Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.672+268:TP53_chr17:g.7585821dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript	7912	47	0	46	0	58
P-0063625-T01-IM7	SOMATIC	FGFR2	ATE1	10	10	123242847	123623415	Intron of FGFR2(-):364bp after exon 17	Intron of ATE1(-):6Kb after exon 8	GRCh37	DUPLICATION	FGFR2 (NM_000141) - ATE1 (NM_001001976) fusion: c.2301+365:FGFR2_c.975+6106:ATE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR2:ATE1}	380568	60	0	48	10	49
P-0063625-T01-IM7	SOMATIC	JAK3	JAK3	19	19	17937876	17950722	Intron of JAK3(-):157bp before exon 24	Intron of JAK3(-):250bp before exon 10	GRCh37	DELETION	JAK3 (NM_000215) rearrangement: c.1255-250_c.3208-157del	PRECISE		MANUAL_OK	3to5	Deletion of 14 exons : in frame	12846	54	0	6	10	11
P-0063625-T01-IM7	SOMATIC	NADK	NADK	6	1	153371519	1687987	5-UTR of RGS17(-):39Kb before coding start	Exon 7 of NADK(-)	GRCh37	TRANSLOCATION	NADK (NM_001198994) rearrangement: t(1;6)(p36.33;q.25.2)(chr1:g.1687987::chr6:g.153371519)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NADK:RGS17}	0	60	0	50	10	49
P-0063629-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10244478	10246409	Intron of DNMT1(-):101bp before exon 40	Intron of DNMT1(-):2bp after exon 38	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.4725+3_c.4817-101del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1931	60	0	64	0	67
P-0063653-T01-IM7	SOMATIC	CD276	CD276	15	15	35312853	73995051	IGR: 42Kb before ZNF770(-)	Intron of CD276(+):61bp before exon 4	GRCh37	INVERSION	CD276 (NM_001024736) rearrangement: c.419-62:CD276_chr15:g.35312853inv	PRECISE		MANUAL_OK	3to3	-	38682198	60	0	6	10	10
P-0001716-T01-IM3	SOMATIC	RPS6KB2	ANO5	11	11	22278855	67201610	Intron of ANO5(+): 371bp before exon 14	Intron of RPS6KB2(+): 59bp before exon 12	GRCh37	DUPLICATION	RPS6KB2 (NM_003952) - ANO5 (NM_213599) duplication:  c.970-59_c.1333-371dup	PRECISE		AUTO_OK	5to3	Protein fusion: in frame (RPS6KB2-ANO5)	44922755	NA	0	15	38	17
P-0014386-T01-IM6	SOMATIC	NAB2	STAT6	12	12	57487858	57493010	Intron of NAB2(+): 477bp after exon 6	Intron of STAT6(-): 67bp after exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) fusion (NAB2 exons 1-6 fused to STAT6 exons 17 - 22): c.1468+477:NAB2_c.1891+67:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein fusion: in frame (NAB2-STAT6)	5152	NA	0	39	41	39
P-0063379-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12016567	12019393	Exon 7 of MAP2K4(+)	Intron of MAP2K4(+):3Kb after exon 7	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.703_c.813+2716del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2826	60	0	21	10	21
P-0063379-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39657740	42315445	Exon 1 of TOP1(+)	Intron of MYBL2(+):46bp before exon 5	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: c.33:TOP1_chr20:g.42315445inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2657705	60	0	55	10	55
P-0063673-T01-IM7	SOMATIC	SMARCD1	SMARCD1	12	12	50479405	50481135	Intron of SMARCD1(+):76bp after exon 1	Intron of SMARCD1(+):10bp before exon 5	GRCh37	DELETION	SMARCD1 (NM_003076) rearrangement: c.177+76_c.532-11del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	1730	60	0	15	10	16
P-0061422-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865641	42867004	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):499bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-499:TMPRSS2_c.18+4646:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001363	60	0	42	10	43
P-0062911-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11129760	11152203	Intron of SMARCA4(+):61bp after exon 17	Exon 31 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.2505+61_c.4391dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	22443	60	0	132	10	137
P-0063007-T02-IM7	SOMATIC	EWSR1	CREB1	22	2	29684271	208439634	Intron of EWSR1(+):323bp before exon 9	Intron of CREB1(+):361bp before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB1 (NM_134442) fusion: t(2;22)(q33.3;q12.2)(chr2:g.208439634::chr22:g.29684271)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB1}	0	60	0	24	10	24
P-0063396-T01-IM7	SOMATIC	RELA	RELA	11	11	65427905	65429569	Intron of RELA(-):219bp before exon 5	Intron of RELA(-):10bp before exon 3	GRCh37	DELETION	RELA (NM_021975) rearrangement: c.35-10_c.336-219del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1664	60	1	60	10	62
P-0063406-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8358282	8404513	Intron of PTPRD(-):16Kb before exon 40	Intron of PTPRD(-):23bp after exon 36	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4210+24_c.4662-16304del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	46231	60	0	6	10	6
P-0063667-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974871	22508586	Intron of CDKN2A(-):4Kb before exon 2	IGR: 62Kb before DMRTA1(+)	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-3664:CDKN2A_chr9:g.22508586inv	PRECISE		MANUAL_OK	3to3	-	533715	60	0	12	10	13
P-0063672-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	40727082	42013795	Exon 28 of PTPRT(-)	IGR: 73Kb before SRSF6(+)	GRCh37	DELETION	PTPRT (NM_133170) rearrangement: c.3882:PTPRT_chr20:g.42013795del	PRECISE		MANUAL_OK	3to5	-	1286713	33	0	32	10	33
P-0063720-T01-IM7	SOMATIC	VEGFA	VEGFA	6	2	43744967	39389309	Intron of VEGFA(+):238bp before exon 3	IGR: 16Kb before CDKL4(-)	GRCh37	TRANSLOCATION	VEGFA (NM_001171623) rearrangement: t(2;6)(p22.1;p21.1)(chr2:g.39389309::chr6:g.43744967)	IMPPRECISE		MANUAL_OK	5to3	-	0	60	0	8	0	8
P-0063728-T01-IM7	SOMATIC	TBX3	TBX3	12	12	115117897	115121502	Intron of TBX3(-):120bp before exon 3	5-UTR of TBX3(-):12Kb before coding start	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.658-120:TBX3_chr12:g.115121502inv	PRECISE		MANUAL_OK	3to3	-	3605	60	0	23	10	23
P-0027419-T06-IM7	SOMATIC	MET	CTTNBP2	7	7	116395607	117400667	Intron of MET(+):38bp after exon 6	Exon 10 of CTTNBP2(-)	GRCh37	INVERSION	MET (NM_000245) - CTTNBP2 (NM_033427) rearrangement: c.1862+38:MET_c.2994:CTTNBP2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MET:CTTNBP2}	1005060	60	0	83	10	82
P-0027419-T06-IM7	SOMATIC	SMARCA2	rearragement	9	5	2161804	681186	Exon 28 of SMARCA2(+)	5-UTR of TPPP(-):16Kb before coding start	GRCh37	TRANSLOCATION	SMARCA2 (NM_003070) - rearragement: t(5;9)(p.15.33;p24.3)(chr5:g.681186::chr9:g.2161804)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	29	0	27	10	61
P-0027419-T06-IM7	SOMATIC	PTPRD	PTPRD	9	9	8514423	26077468	Intron of PTPRD(-):3Kb after exon 21	5-UTR of LOC100506422(+):17Kb before coding start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.1543+3425:PTPRD_chr9:g.26077468del	PRECISE		MANUAL_OK	3to5	-	17563045	59	0	4	6	4
P-0040826-T04-IM7	SOMATIC	TMPRSS2	ERG	21	21	39886256	42869009	Intron of ERG(-):61Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1037:TMPRSS2_c.39+61330:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2982753	60	0	20	0	20
P-0046260-T02-IM7	SOMATIC	BIRC3	BIRC3	11	11	102206774	102208273	Exon 8 of BIRC3(+)	3-UTR of BIRC3(+):13Kb after coding stop	GRCh37	DUPLICATION	BIRC3 (NM_182962) rearrangement: c.1402:BIRC3_chr11:g.102208273dup	PRECISE		MANUAL_OK	5to3	-	1499	60	0	27	10	27
P-0050416-T04-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11104275	11145780	Intron of SMARCA4(+):1Kb before exon 9	Exon 29 of SMARCA4(+)	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.1420-1229_c.4142dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	41505	60	0	8	10	8
P-0062632-T03-IM7	SOMATIC	EWSR1	EWSR1	22	22	29683848	31434213	Intron of EWSR1(+):725bp after exon 8	IGR: 43Kb before SMTN(+)	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.811+725:EWSR1_chr22:g.31434213inv	PRECISE		MANUAL_OK	3to3	-	1750365	60	0	28	10	27
P-0062804-T03-IM7	SOMATIC	KIF5B	ALK	10	2	32304833	29447791	Intron of KIF5B(-):246bp before exon 25	Intron of ALK(-):535bp after exon 19	GRCh37	TRANSLOCATION	KIF5B (NM_004521) - ALK (NM_004304) fusion: t(2;10)(p23.2;p11.22)(chr2:g.29447791::chr10:g.32304833)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIF5B:ALK}	0	60	0	7	8	7
P-0062946-T02-IM7	SOMATIC	ARID1A	ARID1A	1	1	27091688	27094192	Intron of ARID1A(+):1Kb before exon 9	Intron of ARID1A(+):88bp before exon 11	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2733-1024_c.2989-89del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2504	26	0	9	10	12
P-0062946-T02-IM7	SOMATIC	NBN	NBN	8	8	90717415	90996707	IGR: 12Kb before LOC101929709(-)	Intron of NBN(-):45bp after exon 1	GRCh37	DELETION	NBN (NM_002485) rearrangement: c.37+46:NBN_chr8:g.90717415del	PRECISE		MANUAL_OK	3to5	-	279292	60	0	10	10	10
P-0063072-T02-IM7	SOMATIC	MPL	INPP5B	1	1	38370997	43806193	Intron of INPP5B(-):14Kb before exon 8	Intron of MPL(+):9bp after exon 6	GRCh37	INVERSION	MPL (NM_005373) - INPP5B (NM_005540) rearrangement: c.980+9:MPL_c.533-13871:INPP5Binv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MPL:INPP5B}	5435196	60	0	15	0	16
P-0063214-T02-IM7	SOMATIC	PAX8	PAX8	2	2	113991044	114004819	Intron of PAX8(-):2Kb after exon 9	Intron of PAX8(-):323bp before exon 3	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.26-323_c.1087+1927del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	13775	60	0	7	7	7
P-0063214-T02-IM7	SOMATIC	PTPRT	PTPRT	20	15	41420036	43513351	Exon 3 of PTPRT(-)	Promoter of EPB42(-):24Kb from tx start	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(15;20)(q15.2;q12)(chr15:g.43513351::chr20:g.41420036)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	5	10	5
P-0063594-T01-IM7	SOMATIC	ATM	ATM	11	11	108163468	112017079	Exon 30 of ATM(+)	Intron of IL18(-):2Kb after exon 4	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.4559:ATM_chr11:g.112017079del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	3853611	42	0	3	7	5
P-0063596-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139399182	139440339	Exon 26 of NOTCH1(-)	Promoter of NOTCH1(-):51Kb from tx start	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.4961:NOTCH1_chr9:g.139440339del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	41157	60	0	29	10	31
P-0063609-T01-IM7	SOMATIC	RET	RET	10	10	43621426	43623579	Intron of RET(+):596bp before exon 19	Exon 20 of RET(+)	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.3040-597_c.3207inv	PRECISE		MANUAL_OK	5to5	-	2153	60	0	4	6	4
P-0063609-T01-IM7	SOMATIC	CYP19A1	CYP19A1	15	15	51503214	52681805	Exon 10 of CYP19A1(-)	Intron of MYO5A(-):245bp before exon 13	GRCh37	INVERSION	CYP19A1 (NM_031226) rearrangement : c.1303:CYP19A1_c.1543-245:MYO5Ainv	PRECISE		MANUAL_OK	3to3	-	1178591	60	0	41	10	41
P-0063611-T01-IM7	SOMATIC	ATM	ATM	11	5	108160545	28254924	Intron of ATM(+):17bp after exon 29	IGR: 672Kb before LSP1P3(+)	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(5;11)(p14.1;q22.3)(chr5:g.28254924::chr11:g.108160545)	PRECISE		MANUAL_OK	5to5	-	0	60	0	20	10	21
P-0063680-T01-IM7	SOMATIC	PRKD1	PRKD1	14	14	30356647	30396671	Intron of PRKD1(-):40Kb after exon 1	Exon 1 of PRKD1(-)	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.48_c.264+39808del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	40024	60	0	7	0	7
P-0063680-T01-IM7	SOMATIC	BRCA1	BRCA1	17	17	41273418	41276388	Intron of BRCA1(-):3Kb after exon 2	5-UTR of BRCA1(-):79Kb before coding start	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.80+2616:BRCA1_chr17:g.41276388del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2970	34	0	13	10	26
P-0063680-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55246914	55252199	Intron of EGFR(+):2Kb before exon 20	Intron of EGFR(+):3Kb after exon 20	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2284-2072_c.2469+3028dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	5285	60	0	12	10	13
P-0063680-T01-IM7	SOMATIC	PREX2	PREX2	8	8	69012763	69028065	Intron of PREX2(+):685bp after exon 23	Exon 26 of PREX2(+)	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.2715+685_c.3224dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15302	60	0	10	8	10
P-0063686-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55123211	55222216	Intron of EGFR(+):36Kb after exon 1	Intron of EGFR(+):371bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+36153_c.889+371del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	99005	60	0	91	10	93
P-0063687-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268091	55271720	Exon 24 of EGFR(+)	Intron of EGFR(+):1Kb before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2931_c.3272-1229del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3629	60	0	144	0	6229
P-0063707-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2216864	2224358	Intron of DOT1L(+):89bp before exon 21	Intron of DOT1L(+):873bp after exon 25	GRCh37	DUPLICATION	DOT1L (NM_032482) rearrangement: c.2409-90_c.3596+873dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	7494	60	0	62	10	62
P-0063708-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39852169	42867718	Intron of ERG(-):18Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1213:TMPRSS2_c.18+18118:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3015549	60	0	69	10	70
P-0063708-T01-IM7	SOMATIC	TGFBR2	TGFBR2	6	3	45684417	30729769	IGR: 182Kb before CLIC5(-)	Intron of TGFBR2(+):106bp before exon 6	GRCh37	TRANSLOCATION	TGFBR2 (NM_001024847) rearrangement: t(3;6)(p24.1;p21.1)(chr3:g.30729769::chr6:g.45684417)	PRECISE		MANUAL_OK	5to5	-	0	60	0	32	10	32
P-0063709-T01-IM7	SOMATIC	STK11	WDFY4	19	10	1221553	49956324	Intron of STK11(+):214bp after exon 6	Intron of WDFY4(+):5Kb after exon 12	GRCh37	TRANSLOCATION	STK11 (NM_000455) - WDFY4 (NM_020945) rearrangement: t(10;19)(q11.23;p13.3)(chr10:g.49956324::chr19:g.1221553)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {STK11:WDFY4}	0	60	0	9	10	9
P-0063709-T01-IM7	SOMATIC	CHEK2	TTC28	22	22	28465404	29083985	Intron of TTC28(-):25Kb after exon 12	Intron of CHEK2(-):11bp before exon 15	GRCh37	DELETION	CHEK2 (NM_007194) - TTC28 (NM_001145418) rearrangement: c.1543-11:CHEK2_c.3932+24664:TTC28del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {CHEK2:TTC28}	618581	29	0	7	10	12
P-0063711-T01-IM7	SOMATIC	EPS15	ARID1A	1	1	27098938	51825796	Intron of ARID1A(+):52bp before exon 13	Intron of EPS15(-):1Kb after exon 24	GRCh37	INVERSION	EPS15 (NM_001981) - ARID1A (NM_006015) rearrangement: c.2544+1047:EPS15_c.3407-53:ARID1Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {EPS15:ARID1A}	24726858	60	0	25	10	26
P-0063711-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55267218	55269000	Intron of EGFR(+):662bp after exon 23	Exon 25 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2848+662_c.3066del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1782	60	0	15	10	15
P-0063713-T01-IM7	SOMATIC	SOS1	SOS1	4	2	26407551	39213141	Intron of RBPJ(+):245bp before exon 4	Exon 23 of SOS1(-)	GRCh37	TRANSLOCATION	SOS1 (NM_005633) rearrangement: t(2;4)(p22.1;p15.2)(chr2:g.39213141::chr4:g.26407551)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	14	10	14
P-0063713-T01-IM7	SOMATIC	TRIP13	TRIP13	5	5	893229	895749	Intron of TRIP13(+):24bp after exon 1	Intron of TRIP13(+):682bp after exon 2	GRCh37	INVERSION	TRIP13 (NM_004237) rearrangement: c.92+24_c.258+682inv	PRECISE		MANUAL_OK	5to5	-	2520	60	0	15	10	16
P-0063719-T01-IM7	SOMATIC	TERT	TERT	5	5	1295154	10250414	5-UTR of TERT(-):41Kb before coding start	5-UTR of CCT5(+):38bp before coding start	GRCh37	INVERSION	TERT (NM_198253) rearrangement: g.1295154:TERT_chr5:g.10250414_inv	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {TERT:CCT5}	8955260	60	0	41	0	56
P-0063743-T01-IM7	SOMATIC	GARS	EGFR	7	7	30655174	55222368	Intron of GARS(+):337bp before exon 9	Intron of EGFR(+):523bp after exon 7	GRCh37	DELETION	GARS (NM_002047) - EGFR (NM_005228) fusion: c.1032-338:GARS_c.889+523:EGFRdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {GARS:EGFR}	24567194	60	0	8	0	8
P-0063759-T01-IM7	SOMATIC	CACNA1I	SLX4	22	16	40043235	3641215	Intron of CACNA1I(+):349bp after exon 8	Exon 12 of SLX4(-)	GRCh37	TRANSLOCATION	CACNA1I (NM_001003406) - SLX4 (NM_032444) rearrangement: t(16;22)(p13.3;q13.1)(chr16:g.3641215::chr22:g.40043235)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CACNA1I:SLX4}	0	60	0	116	10	116
P-0063760-T01-IM7	SOMATIC	SPEN	SPEN	1	1	16254877	16291838	Exon 11 of SPEN(+)	5-UTR of ZBTB17(-):23Kb before coding start	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.2142:SPEN_chr1:g.16291838del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	36961	60	0	2	6	2
P-0063761-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2107548	2118400	Intron of TSC2(+):369bp after exon 9	Intron of TSC2(+):2Kb before exon 17	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.848+369_c.1717-2057del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	10852	60	0	30	10	30
P-0063761-T01-IM7	SOMATIC	PITPNC1	RPTOR	17	17	65550404	78797013	Intron of PITPNC1(+):671bp after exon 4	Exon 9 of RPTOR(+)	GRCh37	DELETION	PITPNC1 (NM_012417) - RPTOR (NM_020761) rearrangement: c.294+671:PITPNC1_c.1126:RPTORdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PITPNC1:RPTOR}	13246609	60	0	38	0	41
P-0063761-T01-IM7	SOMATIC	STK11	ARID3A	19	19	970115	1223312	Intron of ARID3A(+):2Kb after exon 8	Intron of STK11(+):141bp after exon 8	GRCh37	DUPLICATION	STK11 (NM_000455) - ARID3A (NM_005224) rearrangement: c.1108+141:STK11_c.1594+1612:ARID3Adup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {STK11:ARID3A}	253197	60	0	18	0	18
P-0063762-T01-IM7	SOMATIC	CYSLTR2	CYSLTR2	13	13	49274180	49281094	IGR: 7Kb before CYSLTR2(+)	Exon 1 of CYSLTR2(+)	GRCh37	DELETION	CYSLTR2 (NM_020377) rearrangement: c.141:CYSLTR2_chr13:g.49274180del	PRECISE		MANUAL_OK	3to5	-	6914	31	0	21	10	36
P-0063762-T01-IM7	SOMATIC	NTRK2	NTRK2	9	9	87278819	87475805	IGR: 5Kb before NTRK2(+)	Intron of NTRK2(+):149bp before exon 15	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.1397-150:NTRK2_chr9:g.87278819del	PRECISE		MANUAL_OK	3to5	-	196986	60	0	4	4	4
P-0063763-T01-IM7	SOMATIC	NOTCH4	NOTCH4	6	6	32127062	32185679	Intron of PPT2(+):1Kb after exon 7	Intron of NOTCH4(-):92bp after exon 9	GRCh37	DELETION	NOTCH4 (NM_004557) rearrangement: c.1624+93:NOTCH4_chr6:g.32127062del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	58617	44	0	12	10	14
P-0034065-T02-IM7	SOMATIC	NF1	NF1	17	17	29448445	29508717	Intron of NF1(+):26Kb after exon 1	Intron of NF1(+):10bp before exon 7	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.60+26058_c.655-11del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	60272	23	0	11	10	34
P-0034065-T02-IM7	SOMATIC	TCF3	TCF3	19	19	1354350	1619244	Promoter of MUM1(+):2Kb from tx start	Intron of TCF3(-):11bp before exon 15	GRCh37	DELETION	TCF3 (NM_001136139) rearrangement: c.1327-11:TCF3_chr19:g.1354350del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	264894	60	0	57	10	59
P-0053657-T01-IM7	SOMATIC	MTOR	FAM131C	1	1	11264760	16398882	Exon 26 of MTOR(-)	Intron of FAM131C(-):1Kb after exon 1	GRCh37	DUPLICATION	MTOR (NM_004958) - FAM131C (NM_182623) rearrangement: c.3802:MTOR_c.22+1034:FAM131Cdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MTOR:FAM131C}	5134122	60	0	19	10	19
P-0053657-T01-IM7	SOMATIC	PREX2	PREX2	8	8	68843666	69009565	IGR: 21Kb before PREX2(+)	Intron of PREX2(+):129bp after exon 22	GRCh37	DUPLICATION	PREX2 (NM_024870) rearrangement: c.2553+129:PREX2_chr8:g.68843666dup	IMPPRECISE		MANUAL_OK	5to3	-	165899	60	0	7	0	7
P-0059038-T03-IM7	SOMATIC	EGFR	EGFR	7	7	55141876	55223516	Intron of EGFR(+):55Kb after exon 1	Intron of EGFR(+):6bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+54818_c.890-7del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	81640	60	0	85	0	214
P-0059038-T03-IM7	SOMATIC	BBC3	SAE1	19	19	47679193	47731717	Intron of SAE1(+):6Kb after exon 6	Intron of BBC3(-):14bp before exon 2	GRCh37	INVERSION	BBC3 (NM_001127240) - SAE1 (NM_005500) rearrangement: c.89-14:BBC3_c.733+6013:SAE1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BBC3:SAE1}	52524	60	0	32	10	36
P-0063556-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63850640	63857980	Exon 10 of ARID5B(+)	Promoter of ARID5B(+):197Kb from tx start	GRCh37	DELETION	ARID5B (NM_032199) rearrangement: c.1418:ARID5B_chr10:g.63857980del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7340	60	0	70	10	73
P-0063697-T01-IM7	SOMATIC	ATM	ATM	11	1	108126928	245083176	Intron of ATM(+):13bp before exon 14	IGR: 45Kb before LOC101928068(-)	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(1;11)(q44;q22.3)(chr1:g.245083176::chr11:g.108126928)	PRECISE		MANUAL_OK	5to3	-	0	60	0	30	10	30
P-0063706-T01-IM7	SOMATIC	SMAD3	SMAD3	15	15	67412121	67462989	Intron of SMAD3(+):45Kb before exon 2	Intron of SMAD3(+):47bp after exon 5	GRCh37	DUPLICATION	SMAD3 (NM_005902) rearrangement: c.207-45112_c.658+47dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	50868	60	0	5	6	5
P-0063793-T01-IM7	SOMATIC	BCL2L11	BCL2L11	6	2	149056956	111883221	IGR: 11Kb before UST(+)	Intron of BCL2L11(+):2Kb after exon 2	GRCh37	TRANSLOCATION	BCL2L11 (NM_138621) rearrangement: t(2;6)(q13;q25.1)(chr2:g.111883221::chr6:g.149056956)	PRECISE		MANUAL_OK	3to3	-	0	55	0	66	10	73
P-0063798-T01-IM7	SOMATIC	NEGR1	NEGR1	1	1	72077123	82125137	Intron of NEGR1(-):294bp before exon 5	IGR: 40Kb before LPHN2(+)	GRCh37	INVERSION	NEGR1 (NM_173808) rearrangement: c.668-294:NEGR1_chr1:g.82125137inv	PRECISE		MANUAL_OK	3to3	-	10048014	60	0	22	10	21
P-0063799-T01-IM7	SOMATIC	RB1	RB1	13	13	49026737	49030270	Intron of RB1(+):391bp before exon 18	Intron of RB1(+):69bp before exon 19	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1696-392_c.1815-70del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	3533	60	0	20	10	20
P-0025513-T03-IM7	SOMATIC	JAK1	JAK1	1	1	65335311	65520506	Intron of JAK1(-):154bp before exon 6	Promoter of MIR3671(-):3Kb from tx start	GRCh37	DELETION	JAK1 (NM_002227) rearrangement: c.484-154:JAK1_chr1:g.65520506del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MIR3671:JAK1}	185195	60	0	6	10	7
P-0039732-T03-IM7	SOMATIC	PHF21A	IGF2	11	11	2156846	46045975	Intron of IGF2(-):87bp before exon 3	Intron of PHF21A(-):44Kb before exon 6	GRCh37	DELETION	PHF21A (NM_001101802) - IGF2 (NM_001127598) rearrangement: c.154-44458:PHF21A_c.163-87:IGF2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PHF21A:IGF2}	43889129	60	0	89	10	96
P-0039732-T03-IM7	SOMATIC	MEN1	MEN1	14	11	99779942	64574369	IGR: 84Kb before SETD3(-)	Intron of MEN1(-):113bp after exon 6	GRCh37	TRANSLOCATION	MEN1 (NM_000244) rearrangement: t(11;14)(q13.1;q32.2)(chr11:g.64574369::chr14:g.99779942)	IMPPRECISE		MANUAL_OK	3to5	-	0	60	0	5	0	5
P-0039776-T02-IM7	SOMATIC	PREX2	PREX2	8	8	67180527	68950553	IGR: 76Kb before LINC00967(+)	Intron of PREX2(+):26bp after exon 7	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.839+26:PREX2_chr8:g.67180527inv	PRECISE		MANUAL_OK	5to5	-	1770026	49	0	7	10	9
P-0039776-T02-IM7	SOMATIC	PREX2	PREX2	8	8	69031553	69982459	Intron of PREX2(+):113bp before exon 28	3-UTR of LOC100505718(-):34Kb after coding stop	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.3422-114:PREX2_chr8:g.69982459inv	IMPPRECISE		MANUAL_OK	5to5	-	950906	60	0	5	0	5
P-0040096-T02-IM7	SOMATIC	BRCA1	BRCA1	17	17	41016276	41241313	Promoter of AOC4P(+):3Kb from tx start	Intron of BRCA1(-):2Kb after exon 11	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.4185+1648:BRCA1_chr17:g.41016276inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {BRCA1:AOC4P}	225037	60	0	17	10	17
P-0040096-T02-IM7	SOMATIC	DNMT3B	DNMT3B	20	2	31390331	65685798	Intron of DNMT3B(+):55bp after exon 20	IGR: 148Kb before SPRED2(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(2;20)(p14;q11.21)(chr2:g.65685798::chr20:g.31390331)	PRECISE		MANUAL_OK	3to5	-	0	60	0	26	10	26
P-0040096-T02-IM7	SOMATIC	ALB	ALB	4	4	74270943	152265679	Intron of ALB(+):53bp after exon 2	IGR: 65Kb before FAM160A1(+)	GRCh37	DELETION	ALB (NM_00047) rearrangement: c.137+53:ALB_chr4:g.152265679del	PRECISE		MANUAL_OK	3to5	-	77994736	60	0	12	10	12
P-0040853-T04-IM7	SOMATIC	APC	APC	5	5	112157632	150062094	Exon 11 of APC(+)	IGR: 8Kb before RBM22(-)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.1352:APC_chr5:g.150062094del	IMPPRECISE		MANUAL_OK	3to5	-	37904462	59	0	22	0	23
P-0044075-T04-IM7	SOMATIC	RB1	RB1	13	13	48885236	49027325	Intron of RB1(+):4Kb after exon 2	Intron of RB1(+):78bp after exon 18	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.264+3694_c.1814+78dup	PRECISE		MANUAL_OK	5to3	Duplication of 16 exons : out of frame	142089	60	0	22	10	22
P-0044075-T04-IM7	SOMATIC	BRCA1	CCDC43	17	17	41199526	42758247	Intron of BRCA1(-):133bp after exon 22	Intron of CCDC43(-):236bp before exon 4	GRCh37	DUPLICATION	BRCA1 (NM_007294) - CCDC43 (NM_144609) rearrangement: c.5467+134:BRCA1_c.429-236:CCDC43dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BRCA1:CCDC43}	1558721	60	0	24	0	24
P-0048335-T04-IM7	SOMATIC	EWSR1	WT1	22	11	29687605	32416936	Intron of EWSR1(+):17bp after exon 10	Intron of WT1(-):866bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416936::chr22:g.29687605)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	80	0	80
P-0048973-T02-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	62249084	72993741	IGR: 563Kb before CDH8(-)	Exon 2 of ZFHX3(-)	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.304:ZFHX3_chr16:g.62249084del	PRECISE		MANUAL_OK	3to5	-	10744657	60	0	17	10	17
P-0048973-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	2	42874763	114341584	Intron of TMPRSS2(-):5Kb before exon 2	5-UTR of WASH2P(+):15Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(2;21)(q13;q22.3)(chr2:g.114341584::chr21:g.42874763)	PRECISE		MANUAL_OK	3to3	Transcript Fusion {WASH2P:TMPRSS2}	0	21	0	7	10	7
P-0048973-T02-IM7	SOMATIC	MLH1	MLH1	3	3	37035124	39014756	Exon 1 of MLH1(+)	IGR: 79Kb before WDR48(+)	GRCh37	DELETION	MLH1 (NM_000249) rearrangement: c.86:MLH1_chr3:g.39014756del	PRECISE		MANUAL_OK	3to5	-	1979632	60	0	14	10	14
P-0053343-T04-IM7	SOMATIC	MRE11A	MRE11A	11	11	94170357	99101479	Exon 17 of MRE11A(-)	5-UTR of CNTN5(+):325Kb before coding start	GRCh37	INVERSION	MRE11A (NM_005591) rearrangement: c.1912:MRE11A_chr11:g.99101479inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MRE11A:CNTN5}	4931122	NA	NA	NA	NA	NA
P-0053343-T04-IM7	SOMATIC	EIF4A2	EIF4A2	3	3	186479665	186502236	IGR: 22Kb before EIF4A2(+)	Exon 2 of EIF4A2(+)	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.45:EIF4A2_chr3:g.186479665del	PRECISE		MANUAL_OK	3to5	-	22571	51	0	11	10	11
P-0055106-T03-IM7	SOMATIC	PTPRD	PTPRD	9	9	8518493	12693322	Intron of PTPRD(-):64bp before exon 21	Promoter of TYRP1(+):63bp from tx start	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.962-64:PTPRD_chr9:g.12693322del	PRECISE		MANUAL_OK	3to5	-	4174829	60	0	28	10	55
P-0055667-T06-IM7	SOMATIC	PICALM	ALK	11	2	85681391	29446386	Intron of PICALM(-):4Kb after exon 19	Exon 20 of ALK(-)	GRCh37	TRANSLOCATION	PICALM (NM_007166) - ALK (NM_004304) fusion: t(2;11)(p23.2;q14.2)(chr2:g.29446386::chr11:g.85681391)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PICALM:ALK}	0	60	0	36	10	36
P-0055936-T03-IM7	SOMATIC	WHSC1	WHSC1	4	4	1972503	1980604	Intron of WHSC1(+):4Kb before exon 19	Exon 22 of WHSC1(+)	GRCh37	INVERSION	WHSC1 (NM_001042424) rearrangement: c.3373-4087_c.4066inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	8101	60	0	12	10	12
P-0056237-T02-IM7	SOMATIC	MEN1	MEN1	11	11	64557531	64571859	Intron of MAP4K2(-):100bp before exon 30	Exon 10 of MEN1(-)	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.1795:MEN1_chr11:g.64557531inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	14328	60	0	25	10	30
P-0062055-T02-IM7	SOMATIC	SMAD4	SMAD4	18	18	48573540	48621397	Exon 2 of SMAD4(+)	IGR: 65Kb before SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.124:SMAD4_chr18:g.48621397del	PRECISE		MANUAL_OK	3to5	-	47857	44	0	9	10	18
P-0062301-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47038594	47039769	Intron of RBM10(+):32bp after exon 8	Intron of RBM10(+):48bp before exon 12	GRCh37	INVERSION	RBM10 (NM_001204468) rearrangement: c.919+32_c.1356-49inv	IMPPRECISE		MANUAL_OK	5to5	-	1175	60	0	8	0	8
P-0062503-T02-IM7	SOMATIC	STAG2	STAG2	X	X	123159719	123220566	Exon 4 of STAG2(+)	Exon 30 of STAG2(+)	GRCh37	DUPLICATION	STAG2 (NM_001042749) rearrangement: c.74_c.3223dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	60847	60	0	82	10	90
P-0063081-T02-IM7	SOMATIC	ROS1	ROS1	6	6	117661549	117681902	Intron of ROS1(-):748bp after exon 30	Intron of ROS1(-):334bp before exon 22	GRCh37	DELETION	ROS1 (NM_002944) rearrangement: c.3382-334_c.5079+749del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	20353	60	0	10	10	10
P-0063251-T02-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120434666	120465618	Promoter of ADAM30(-):1Kb from tx start	Intron of NOTCH2(-):217bp before exon 27	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.4860-217:NOTCH2_chr1:g.120434666inv	PRECISE		MANUAL_OK	3to3	-	30952	60	0	29	10	28
P-0063348-T02-IM7	SOMATIC	FOXO1	MRPS31	13	13	41240078	41327833	Exon 1 of FOXO1(-)	Intron of MRPS31(-):321bp after exon 5	GRCh37	DUPLICATION	FOXO1 (NM_002015) - MRPS31 (NM_005830) rearrangement: c.272:FOXO1_c.814+322:MRPS31dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FOXO1:MRPS31}	87755	60	0	4	9	4
P-0063348-T02-IM7	SOMATIC	STK11	STK11	19	19	1219518	1222762	Intron of STK11(+):106bp after exon 3	Intron of STK11(+):221bp before exon 8	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.464+106_c.921-222del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	3244	60	0	67	10	69
P-0063512-T01-IM7	SOMATIC	FGFR2	ATE1	10	10	123263336	123631446	Exon 10 of FGFR2(-)	Intron of ATE1(-):2Kb before exon 8	GRCh37	DUPLICATION	FGFR2 (NM_000141) - ATE1 (NM_001001976) rearrangement: c.1407:FGFR2_c.943-1893:ATE1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR2:ATE1}	368110	60	0	33	10	34
P-0063539-T02-IM7	SOMATIC	MET	MET	7	7	116411783	116413127	Intron of MET(+):75bp after exon 13	Intron of MET(+):1Kb after exon 14	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2887+75_c.3028+1084del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1344	60	0	124	10	126
P-0063640-T01-IM7	SOMATIC	DNMT3B	DNMT3B	20	3	31390138	99552159	Intron of DNMT3B(+):52bp before exon 20	Intron of CMSS1(+):15Kb after exon 1	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(3;20)(q12.1;q11.21)(chr3:g.99552159::chr20:g.31390138)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CMSS1:DNMT3B}	0	60	0	12	10	10
P-0063802-T01-IM7	SOMATIC	RET	CTNNA3	10	10	43617566	68314829	Intron of RET(+):102bp after exon 16	Intron of CTNNA3(-):34Kb before exon 11	GRCh37	INVERSION	RET (NM_020975) - CTNNA3 (NM_013266) rearrangement: c.2801+102:RET_c.1375-34298:CTNNA3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RET:CTNNA3}	24697263	60	0	19	10	19
P-0063802-T01-IM7	SOMATIC	ATM	DDX10	11	11	108142061	108744665	Exon 20 of ATM(+)	Intron of DDX10(+):22Kb after exon 16	GRCh37	DELETION	ATM (NM_000051) - DDX10 (NM_004398) rearrangement: c.3005:ATM_c.2304+21729:DDX10del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ATM:DDX10}	602604	60	0	33	10	34
P-0063802-T01-IM7	SOMATIC	EPHA5	EPHA5	4	1	66468136	68267667	Intron of EPHA5(-):114bp before exon 3	5-UTR of GNG12(-):97Kb before coding start	GRCh37	TRANSLOCATION	EPHA5 (NM_004439) rearrangement: t(1;4)(p31.3;q13.1)(chr1:g.68267667::chr4:g.66468136)	PRECISE		MANUAL_OK	3to3	-	0	60	0	26	10	26
P-0063805-T01-IM7	SOMATIC	ATXN7	ATXN7	3	3	63982187	70543251	Intron of ATXN7(+):28bp after exon 11	IGR: 461Kb before FOXP1(-)	GRCh37	DELETION	ATXN7 (NM_001177387) rearrangement: c.2661+28:ATXN7_chr3:g.70543251del	PRECISE		MANUAL_OK	3to5	-	6561064	60	0	21	10	21
P-0063807-T01-IM7	SOMATIC	ARID1A	ARID1A	8	1	31171682	27088523	IGR: 281Kb before WRN(+)	Intron of ARID1A(+):119bp before exon 7	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;8)(p36.11;p12)(chr1:g.27088523::chr8:g.31171682)	PRECISE		MANUAL_OK	3to5	-	0	60	0	165	10	165
P-0063809-T01-IM7	SOMATIC	POLE	GOLGA3	12	12	133249458	133396500	Intron of POLE(-):33bp before exon 15	Intron of GOLGA3(-):2Kb after exon 2	GRCh37	DUPLICATION	POLE (NM_006231) - GOLGA3 (NM_005895) rearrangement: c.1474-33:POLE_c.133+2082:GOLGA3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {POLE:GOLGA3}	147042	60	0	38	10	38
P-0063809-T01-IM7	SOMATIC	RTEL1	RTEL1	20	20	57770876	62305624	Intron of ZNF831(+):47bp before exon 2	Intron of RTEL1(+):178bp after exon 10	GRCh37	INVERSION	RTEL1 (NM_032957) rearrangement: c.991+178:RTEL1_chr20:g.57770876inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	4534748	60	0	12	0	12
P-0063815-T01-IM7	SOMATIC	RNF43	RNF43	17	17	21889035	56440569	IGR: 15Kb before FLJ36000(+)	Intron of RNF43(-):66bp after exon 5	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.582+67:RNF43_chr17:g.21889035del	PRECISE		MANUAL_OK	3to5	-	34551534	60	0	20	10	24
P-0063816-T01-IM7	SOMATIC	TERT	TERT	5	5	1295587	1801724	Promoter of TERT(-):42Kb from tx start	Intron of NDUFS6(+):61bp after exon 1	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-483:TERT_chr5:g.1801724inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {NDUFS6:TERT}	506137	60	0	60	10	58
P-0063855-T01-IM7	SOMATIC	FBXW7	FBXW7	4	4	153246842	153271440	Intron of FBXW7(-):315bp after exon 10	Intron of FBXW7(-):164bp before exon 3	GRCh37	DUPLICATION	FBXW7 (NM_033632) rearrangement: c.502-164_c.1644+316dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	24598	60	0	8	10	9
P-0063855-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21784601	22008126	IGR: 18Kb before MTAP(+)	Intron of CDKN2B(-):670bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+671:CDKN2B_chr9:g.21784601del	IMPPRECISE		MANUAL_OK	3to5	-	223525	60	0	5	0	5
P-0063856-T01-IM7	SOMATIC	RASA1	RASA1	5	5	86678929	86680950	Intron of RASA1(+):600bp before exon 21	Intron of RASA1(+):167bp before exon 22	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.2691-601_c.2759-168del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2021	60	0	4	5	5
P-0063678-T01-IM7	SOMATIC	IRS1	IRS1	2	2	227663050	227675801	Exon 1 of IRS1(-)	IGR: 25Kb before RHBDD1(+)	GRCh37	DELETION	IRS1 (NM_005544) rearrangement: c.405:IRS1_chr2:g.227675801del	PRECISE		MANUAL_OK	3to5	-	12751	60	0	130	10	139
P-0021942-T02-IM7	SOMATIC	BRIP1	BRIP1	17	17	59746781	59760703	IGR: 10Kb before BRIP1(-)	Exon 20 of BRIP1(-)	GRCh37	DELETION	BRIP1 (NM_032043) rearrangement: c.3704:BRIP1_chr17:g.59746781del	PRECISE		MANUAL_OK	3to5	-	13922	60	0	18	10	18
P-0034156-T02-IM7	SOMATIC	FGFR1	FGFR1	8	8	38118264	38273338	3-UTR of DDHD2(+):28Kb after coding stop	Intron of FGFR1(-):49bp after exon 14	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1947+50:FGFR1_chr8:g.38118264del	PRECISE		MANUAL_OK	3to5	-	155074	60	0	7	10	6
P-0063350-T02-IM7	SOMATIC	PMS1	PMS1	2	2	190716897	190718904	Intron of PMS1(+):483bp before exon 7	Intron of PMS1(+):60bp before exon 9	GRCh37	DELETION	PMS1 (NM_000534) rearrangement: c.700-484_c.967-61del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2007	60	0	7	10	7
P-0063698-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	149502573	149508682	Intron of PDGFRB(-):31bp after exon 15	Intron of PDGFRB(-):637bp after exon 10	GRCh37	DUPLICATION	PDGFRB (NM_002609) rearrangement: c.1579+638_c.2183+32dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	6109	60	0	71	10	76
P-0063725-T02-IM7	SOMATIC	TSC2	TSC2	16	16	2113031	2124960	Exon 14 of TSC2(+)	Intron of TSC2(+):570bp after exon 22	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.1420_c.2545+570del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11929	32	0	24	10	31
P-0063794-T01-IM7	SOMATIC	CSF3R	MACF1	1	1	36937597	39856511	Intron of CSF3R(-):69bp after exon 9	Intron of MACF1(+):2Kb after exon 52	GRCh37	INVERSION	CSF3R (NM_000760) - MACF1 (NM_012090) rearrangement: c.1071+70:CSF3R_c.9630+2181:MACF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CSF3R:MACF1}	2918914	26	0	5	10	14
P-0063893-T01-IM7	SOMATIC	MAN2A1	CSF1R	5	5	109078769	149434838	Intron of MAN2A1(+):12Kb before exon 5	Exon 20 of CSF1R(-)	GRCh37	INVERSION	MAN2A1 (NM_002372) - CSF1R (NM_005211) rearrangement: c.708-12261:MAN2A1_c.2616:CSF1Rinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MAN2A1:CSF1R}	40356069	60	0	51	10	51
P-0063894-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39849990	42867841	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1336:TMPRSS2_c.18+20297:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3017851	60	0	62	10	66
P-0063896-T01-IM7	SOMATIC	WHSC1	WHSC1	4	4	1891689	1902949	5-UTR of WHSC1(+):11Kb before coding start	Exon 2 of WHSC1(+)	GRCh37	DELETION	WHSC1 (NM_001042424) rearrangement: c.568:WHSC1_chr4:g.1891689del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11260	60	0	36	10	37
P-0063900-T01-IM7	SOMATIC	RYBP	RYBP	3	3	72455985	197197972	Intron of RYBP(-):27Kb before exon 2	IGR: 39Kb before BDH1(-)	GRCh37	DELETION	RYBP (NM_012234) rearrangement: c.129-27407:RYBP_chr3:g.197197972del	PRECISE		MANUAL_OK	3to5	-	124741987	60	0	3	7	3
P-0063906-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	1	38792798	152006279	Intron of SMARCE1(-):20bp before exon 6	Intron of S100A11(-):3bp before exon 2	GRCh37	TRANSLOCATION	SMARCE1 (NM_003079) rearrangement: t(1;7)(q21.3;q21.2)(chr1:g.152006279::chr17:g.38792798)	IMPPRECISE		MANUAL_OK	3to3	-	0	45	0	23	0	24
P-0063908-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187110974	187539944	3-UTR of FLJ38576(-):2Kb after coding stop	Exon 10 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.7796:FAT1_chr4:g.187110974del	PRECISE		MANUAL_OK	3to5	-	428970	60	0	41	10	42
P-0063912-T01-IM7	SOMATIC	NUF2	NUF2	1	1	163315372	163327660	Intron of NUF2(+):95bp before exon 11	Promoter of NUF2(+):36Kb from tx start	GRCh37	INVERSION	NUF2 (NM_031423) rearrangement: c.808-96:NUF2_chr1:g.163327660inv	IMPPRECISE		MANUAL_OK	5to5	-	12288	60	0	13	0	13
P-0063912-T01-IM7	SOMATIC	PARP1	PARP1	1	1	219007935	226567937	IGR: 246Kb before LYPLAL1-AS1(-)	Intron of PARP1(-):72bp before exon 10	GRCh37	INVERSION	PARP1 (NM_001618) rearrangement: c.1301-72:PARP1_chr1:g.219007935inv	IMPPRECISE		MANUAL_OK	3to3	-	7560002	60	0	10	0	10
P-0063912-T01-IM7	SOMATIC	KDR	KDR	4	4	55383800	55948750	IGR: 140Kb before KIT(+)	Exon 28 of KDR(-)	GRCh37	INVERSION	KDR (NM_002253) rearrangement: c.3715:KDR_chr4:g.55383800inv	PRECISE		MANUAL_OK	5to5	-	564950	60	0	33	10	33
P-0063912-T01-IM7	SOMATIC	PTPN12	ELF3	7	1	77233098	201982869	Intron of PTPN12(+):3Kb after exon 8	Intron of ELF3(+):87bp before exon 8	GRCh37	TRANSLOCATION	PTPN12 (NM_002835) - ELF3 (NM_004433) rearrangement: t(1;7)(q32.1;q11.23)(chr1:g.201982869::chr7:g.77233098)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {PTPN12:ELF3}	0	60	0	10	0	10
P-0063912-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139395353	139410329	Intron of NOTCH1(-):54bp before exon 31	Intron of NOTCH1(-):103bp after exon 10	GRCh37	DUPLICATION	NOTCH1 (NM_017617) rearrangement: c.1669+104_c.5639-54dup	PRECISE		MANUAL_OK	5to3	Duplication of 20 exons : in frame	14976	60	0	21	10	21
P-0063929-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739574	1808782	Intron of TACC3(+):145bp after exon 10	Intron of FGFR3(+):60bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-61:FGFR3_c.1941+145:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69208	50	0	2	8	2
P-0064027-T01-IM7	SOMATIC	PKD1L1	FBXW7	7	4	47865192	153245400	Intron of PKD1L1(-):2Kb after exon 45	Exon 11 of FBXW7(-)	GRCh37	TRANSLOCATION	PKD1L1 (NM_138295) - FBXW7 (NM_033632) rearrangement: t(4;7)(q31.3;p12.3)(chr4:g.153245400::chr7:g.47865192)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PKD1L1:FBXW7}	0	60	0	17	10	18
P-0064030-T01-IM7	SOMATIC	MGA	MGA	15	15	42018543	42028520	Intron of MGA(+):834bp before exon 10	Exon 13 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.3431-835_c.4058inv	PRECISE		MANUAL_OK	5to5	-	9977	60	0	74	10	88
P-0064033-T01-IM7	SOMATIC	STK11	STK11	19	19	1205334	1207172	Promoter of STK11(+):463bp from tx start	Exon 1 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.260:STK11_chr19:g.1205334del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1838	60	0	42	10	43
P-0064039-T01-IM7	SOMATIC	NAB2	NAB2	12	12	57486309	57505954	Exon 3 of NAB2(+)	Promoter of STAT6(-):17Kb from tx start	GRCh37	INVERSION	NAB2 (NM_005967) rearrangement: c.1036:NAB2_chr12:g.57505954inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	19645	60	0	192	10	192
P-0064041-T01-IM7	SOMATIC	B2M	B2M	15	15	44926198	45007477	Intron of SPG11(-):363bp before exon 8	Intron of B2M(+):143bp before exon 2	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.68-144:B2M_chr15:g.44926198del	PRECISE		MANUAL_OK	3to5	-	81279	60	0	14	10	14
P-0064043-T01-IM7	SOMATIC	MET	TSC2	16	7	2108775	116432568	Exon 10 of TSC2(+)	Intron of MET(+):3Kb before exon 20	GRCh37	TRANSLOCATION	MET (NM_000245) - TSC2 (NM_000548) rearrangement: t(7;16)(q31.2;p13.3)(chr7:g.116432568::chr16:g.2108775)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	57	10	63
P-0044788-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	14	15276320	94496828	Exon 31 of NOTCH3(-)	Intron of OTUB2(+):4Kb after exon 1	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(14;19)(q32.12;p13.12)(chr14:g.94496828::chr19:g.15276320)	IMPPRECISE		MANUAL_OK	3to5	-	0	60	0	8	0	8
P-0044788-T02-IM7	SOMATIC	RAF1	RAF1	X	3	153841392	12647787	IGR: 4Kb before CTAG1B(-)	Exon 6 of RAF1(-)	GRCh37	TRANSLOCATION	RAF1 (NM_002880) rearrangement: t(3;X)(p25.2;q28)(chr3:g.12647787::chrX:g.153841392)	PRECISE		MANUAL_OK	3to3	-	0	60	0	8	10	15
P-0061220-T02-IM7	SOMATIC	TERT	SLC25A46	5	5	1296386	110096394	Promoter of TERT(-):43Kb from tx start	Intron of SLC25A46(+):509bp before exon 8	GRCh37	DELETION	TERT (NM_198253) - SLC25A46 (NM_138773) rearrangement: c.-1282:TERT_c.679-510:SLC25A46del	PRECISE		MANUAL_OK	3to5	-	108800008	22	0	6	10	7
P-0121494-T03-IM7	SOMATIC	STAT3	ABR	17	17	1082993	40475432	Exon 1 of ABR(-)	Intron of STAT3(-):60bp before exon 19	GRCh37	DELETION	STAT3 (NM_139276) - ABR (NM_021962) rearrangement: c.1654-60:STAT3_c.29:ABRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {STAT3:ABR}	39392439	60	0	9	10	9
P-0063160-T02-IM7	SOMATIC	FH	WDR64	1	1	241661197	241817859	Exon 10 of FH(-)	Intron of WDR64(+):2Kb after exon 1	GRCh37	DELETION	FH (NM_000143) rearrangement: c.1464:FH_chr1:g.241817859del	PRECISE		MANUAL_OK	3to5	-	156662	60	0	14	10	14
P-0064123-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55106154	55222016	Intron of EGFR(+):19Kb after exon 1	Intron of EGFR(+):171bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+19096_c.889+171del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	115862	60	0	29	10	30
P-0064194-T01-IM7	SOMATIC	ARID1B	ARID1B	6	5	157528758	173837335	Exon 20 of ARID1B(+)	5-UTR of LINC01411(+):117Kb before coding start	GRCh37	TRANSLOCATION	ARID1B (NM_020732) rearrangement: t(5;6)(q35.2;q25.3)(chr5:g.173837335::chr6:g.157528758)	PRECISE		MANUAL_OK	5to5	-	0	60	0	75	10	94
P-0064199-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11107198	13502707	Exon 11 of SMARCA4(+)	Intron of CACNA1A(-):20Kb before exon 4	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1790:SMARCA4_chr19:g.13502707del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	2395509	60	0	57	0	212
P-0057435-T06-IM7	SOMATIC	ETV6	ETV6	12	1	12013251	237547858	Intron of ETV6(+):7Kb after exon 4	Intron of RYR2(+):3Kb before exon 9	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(1;12)(q43;p13.2)(chr1:g.237547858::chr12:g.12013251)	PRECISE		MANUAL_OK	5to5	-	0	60	0	36	10	37
P-0057435-T06-IM7	SOMATIC	GNAS	GNAS	20	8	57485759	16741154	Exon 13 of GNAS(+)	IGR: 109Kb before FGF20(-)	GRCh37	TRANSLOCATION	GNAS (NM_000516) rearrangement: t(8;20)(p22;q13.32)(chr8:g.16741154::chr20:g.57485759)	PRECISE		MANUAL_OK	5to3	-	0	60	0	40	10	40
P-0061028-T02-IM7	SOMATIC	ESR1	ESR1	11	6	113890233	152408298	IGR: 40Kb before ZBTB16(+)	Intron of ESR1(+):7Kb before exon 8	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;11)(q25.1;q23.2)(chr6:g.152408298::chr11:g.113890233)	PRECISE		MANUAL_OK	5to3	-	0	60	0	9	8	9
P-0063243-T02-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11141395	11143574	Intron of SMARCA4(+):10bp before exon 25	Intron of SMARCA4(+):391bp before exon 26	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3383-11_c.3547-392del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	2179	60	0	12	10	12
P-0063243-T02-IM7	SOMATIC	FANCC	FANCC	9	9	97670040	97873524	Intron of C9orf3(+):16Kb before exon 6	Intron of FANCC(-):220bp after exon 13	GRCh37	DELETION	FANCC (NM_000136) rearrangement: c.1329+221:FANCC_chr9:g.97670040del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	203484	60	0	3	5	3
P-0063351-T02-IM7	SOMATIC	EZR	ROS1	6	6	117645650	159191197	Intron of ROS1(-):72bp before exon 34	Intron of EZR(-):221bp before exon 10	GRCh37	DELETION	EZR (NM_003379) - ROS1 (NM_002944) fusion: c.1091-221:EZR_c.5558-72:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EZR:ROS1}	41545547	60	0	36	10	36
P-0063458-T02-IM7	SOMATIC	CREBBP	CREBBP	16	16	3828144	3864848	Exon 10 of CREBBP(-)	Intron of CREBBP(-):4Kb before exon 3	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.799-4068_c.1981inv	PRECISE		MANUAL_OK	3to3	-	36704	60	0	4	4	4
P-0063458-T02-IM7	SOMATIC	FAT1	FAT1	4	4	187626121	187629013	Intron of FAT1(-):2Kb after exon 2	Exon 2 of FAT1(-)	GRCh37	DELETION	FAT1 (NM_005245) rearrangement: c.1969_c.3265+1596del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2892	60	0	24	10	25
P-0063535-T02-IM7	SOMATIC	PTPRD	PTPRD	9	9	8331858	34864686	Intron of PTPRD(-):122bp before exon 44	IGR: 34Kb before FAM205BP(-)	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.5380-122:PTPRD_chr9:g.34864686del	PRECISE		MANUAL_OK	3to5	-	26532828	60	0	26	10	26
P-0063741-T02-IM7	SOMATIC	PIK3CA	PIK3CA	3	3	178917323	179155277	Intron of PIK3CA(+):154bp before exon 3	5-UTR of GNB4(-):36Kb before coding start	GRCh37	INVERSION	PIK3CA (NM_006218) rearrangement: c.353-155:PIK3CA_chr3:g.179155277inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {GNB4:PIK3CA}	237954	60	0	14	10	15
P-0063973-T01-IM7	SOMATIC	KIT	KIT	4	4	55590600	55592071	Intron of KIT(+):736bp after exon 8	Exon 9 of KIT(+)	GRCh37	DUPLICATION	KIT (NM_000222) rearrangement: c.1346+736_c.1395dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1471	60	0	72	10	75
P-0064066-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123229373	123622491	Intron of STAG2(+):74bp after exon 34	Intron of TENM1(-):7Kb before exon 21	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.3783+74:STAG2_chrX:g.123622491del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	393118	60	0	69	10	72
P-0064070-T01-IM7	SOMATIC	STAT3	STAT3	17	17	40483004	40490849	Intron of STAT3(-):485bp after exon 11	Intron of STAT3(-):19bp before exon 6	GRCh37	INVERSION	STAT3 (NM_139276) rearrangement: c.469-19_c.1109+486inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7845	60	0	4	7	4
P-0064086-T01-IM7	SOMATIC	KDM6A	KDM6A	X	12	44948826	116440215	Intron of KDM6A(+):161bp before exon 25	Intron of MED13L(-):592bp after exon 14	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(12;X)(q24.21;p11.3)(chr12:g.116440215::chrX:g.44948826)	PRECISE		MANUAL_OK	5to3	-	0	60	0	7	7	7
P-0064088-T01-IM7	SOMATIC	CUL1	BRAF	7	7	140489451	148459544	Intron of BRAF(-):2Kb before exon 9	Intron of CUL1(+):2Kb after exon 7	GRCh37	INVERSION	CUL1 (NM_003592) - BRAF (NM_004333) fusion: c.789+1956:CUL1_c.1141-2067:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CUL1:BRAF}	7970093	60	0	36	10	36
P-0064090-T01-IM7	SOMATIC	RECQL	RECQL	12	3	21630740	42851932	Exon 7 of RECQL(-)	5-UTR of ACKR2(+):54Kb before coding start	GRCh37	TRANSLOCATION	RECQL (NM_032941) rearrangement: t(3;12)(p22.1;p12.1)(chr3:g.42851932::chr12:g.21630740)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	55	0	52	10	53
P-0064090-T01-IM7	SOMATIC	ESR1	ESR1	9	6	75516001	152322911	3-UTR of ALDH1A1(-):122bp after coding stop	Intron of ESR1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;9)(q25.1;q21.13)(chr6:g.152322911::chr9:g.75516001)	PRECISE		MANUAL_OK	3to5	-	0	60	0	22	10	22
P-0064090-T01-IM7	SOMATIC	MSH6	MSH6	Y	2	6806577	48030434	5-UTR of TBL1Y(+):87Kb before coding start	Intron of MSH6(+):124bp before exon 5	GRCh37	TRANSLOCATION	MSH6 (NM_000179) rearrangement: t(2;Y)(p16.3;p11.2)(chr2:g.48030434::chrY:g.6806577)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	19	10	19
P-0064090-T02-IM7	SOMATIC	RECQL	RECQL	12	3	21630740	42851932	Exon 7 of RECQL(-)	5-UTR of ACKR2(+):54Kb before coding start	GRCh37	TRANSLOCATION	RECQL (NM_032941) rearrangement: t(3;12)(p22.1;p12.1)(chr3:g.42851932::chr12:g.21630740)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	7	10	7
P-0064090-T02-IM7	SOMATIC	ESR1	ESR1	9	6	75516001	152322911	3-UTR of ALDH1A1(-):122bp after coding stop	Intron of ESR1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;9)(q25.1;q21.13)(chr6:g.152322911::chr9:g.75516001)	PRECISE		MANUAL_OK	3to5	-	0	60	0	8	9	8
P-0064091-T01-IM7	SOMATIC	EWSR1	EWSR1	22	22	29678288	29686453	Intron of EWSR1(+):90bp before exon 7	Intron of EWSR1(+):1Kb before exon 10	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.432-91_c.993-1101del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	8165	60	0	12	10	12
P-0064092-T01-IM7	SOMATIC	RTEL1	RTEL1	20	8	62326471	128089702	Exon 33 of RTEL1(+)	3-UTR of PCAT2(-):5Kb after coding stop	GRCh37	TRANSLOCATION	RTEL1 (NM_032957) rearrangement: t(8;20)(q24.21;q13.33)(chr8:g.128089702::chr20:g.62326471)	PRECISE		MANUAL_OK	3to5	-	0	60	0	10	10	10
P-0064093-T01-IM7	SOMATIC	CBL	CDH3	16	11	68695546	119103412	Intron of CDH3(+):15Kb before exon 3	Intron of CBL(+):7bp after exon 2	GRCh37	TRANSLOCATION	CBL (NM_005188) - CDH3 (NM_001793) rearrangement: t(11;16)(q23.3;q22.1)(chr11:g.119103412::chr16:g.68695546)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CBL:CDH3}	0	60	0	33	10	33
P-0064093-T01-IM7	SOMATIC	MSI2	MSI2	17	17	51217673	55607091	IGR: 155Kb before C17orf112(+)	Intron of MSI2(+):6bp after exon 7	GRCh37	INVERSION	MSI2 (NM_138962) rearrangement: c.454+6:MSI2_chr17:g.51217673inv	PRECISE		MANUAL_OK	5to5	-	4389418	60	0	16	10	16
P-0064094-T01-IM7	SOMATIC	JAK3	JAK3	19	19	17937783	19797776	Intron of JAK3(-):64bp before exon 24	IGR: 18Kb before ZNF101(+)	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.3208-64:JAK3_chr19:g.19797776inv	PRECISE		MANUAL_OK	3to3	-	1859993	53	0	4	5	4
P-0064094-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8404691	15884265	Intron of PTPRD(-):31bp before exon 36	Intron of CCDC171(+):10Kb after exon 24	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.4087-31:PTPRD_chr9:g.15884265del	PRECISE		MANUAL_OK	3to5	-	7479574	60	0	24	10	24
P-0064100-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46148353	46231479	Intron of ARID2(+):23Kb after exon 3	Exon 10 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.284+23256_c.1319del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	83126	60	0	14	10	14
P-0064103-T01-IM7	SOMATIC	DROSHA	NELL1	11	5	20796156	31484832	Intron of NELL1(+):9Kb before exon 3	Intron of DROSHA(-):155bp after exon 14	GRCh37	TRANSLOCATION	DROSHA (NM_013235) - NELL1 (NM_006157) rearrangement: t(5;11)(p13.3;p15.1)(chr5:g.31484832::chr11:g.20796156)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {DROSHA:NELL1}	0	60	0	6	9	6
P-0064103-T01-IM7	SOMATIC	ZNF568	AXL	19	19	37415450	41758567	Intron of ZNF568(+):651bp before exon 4	Intron of AXL(+):183bp before exon 16	GRCh37	DELETION	ZNF568 (NM_198539) - AXL (NM_021913) rearrangement: c.77-652:ZNF568_c.1805-184:AXLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ZNF568:AXL}	4343117	28	0	3	10	4
P-0064106-T01-IM7	SOMATIC	FOXA1	FOXA1	14	8	38061551	126416157	Exon 2 of FOXA1(-)	IGR: 26Kb before TRIB1(+)	GRCh37	TRANSLOCATION	FOXA1 (NM_004496) rearrangement: t(8;14)(q24.13;q21.1)(chr8:g.126416157::chr14:g.38061551)	PRECISE		MANUAL_OK	5to5	-	0	58	0	8	10	8
P-0064110-T01-IM7	SOMATIC	ATM	ATM	11	11	98969271	108153350	5-UTR of CNTN5(+):458Kb before coding start	Intron of ATM(+):86bp before exon 25	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.3577-87:ATM_chr11:g.98969271del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {CNTN5:ATM}	9184079	60	0	16	10	16
P-0064110-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	6	42842465	7316283	Intron of TMPRSS2(-):109bp after exon 11	Promoter of SSR1(-):35Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(p24.3;q22.3)(chr6:g.7316283::chr21:g.42842465)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	23	10	23
P-0061077-T04-IM7	SOMATIC	AXIN1	AXIN1	19	16	1045043	347055	Exon 12 of ABCA7(+)	Exon 7 of AXIN1(-)	GRCh37	TRANSLOCATION	AXIN1 (NM_003502) rearrangement: t(16;19)(p13.3;p13.3)(chr16:g.347055::chr19:g.1045043)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	5	9	5
P-0062672-T01-IM7	SOMATIC	GNAS	GNAS	20	20	46506373	57485737	IGR: 102Kb before LINC01522(-)	Exon 13 of GNAS(+)	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.1039-1:GNAS_chr20:g.46506373inv	IMPPRECISE		MANUAL_OK	5to5	-	10979364	58	0	17	0	20
P-0062726-T02-IM7	SOMATIC	TET2	TET2	16	4	51434313	106163967	IGR: 264Kb before SALL1(-)	Intron of TET2(+):23bp before exon 5	GRCh37	TRANSLOCATION	TET2 (NM_001127208) rearrangement: t(4;16)(q24;q12.1)(chr4:g.106163967::chr16:g.51434313)	PRECISE		MANUAL_OK	3to5	-	0	60	0	35	10	35
P-0064154-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39876198	42872449	Intron of ERG(-):59Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2333:TMPRSS2_c.40-58654:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2996251	56	0	7	0	7
P-0064156-T01-IM7	SOMATIC	UPF1	UPF1	19	12	18971773	53384600	Exon 17 of UPF1(+)	IGR: 15Kb before EIF4B(+)	GRCh37	TRANSLOCATION	UPF1 (NM_002911) rearrangement: t(12;19)(q13.13;p13.11)(chr12:g.53384600::chr19:g.18971773)	PRECISE		MANUAL_OK	3to5	-	0	60	0	76	10	77
P-0013143-T06-IM7	SOMATIC	SESN3	SESN3	11	11	94896914	94908729	Promoter of SESN3(-):2Kb from tx start	Exon 9 of SESN3(-)	GRCh37	DELETION	SESN3 (NM_144665) rearrangement: c.1325:SESN3_chr11:g.94896914del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11815	60	0	27	10	27
P-0020693-T02-IM7	SOMATIC	APC	APC	5	5	112154669	112183731	Exon 10 of APC(+)	Promoter of APC(+):110Kb from tx start	GRCh37	DELETION	APC (NM_000038) rearrangement: c.940:APC_chr5:g.112183731del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	29062	60	0	12	10	13
P-0023357-T05-IM7	SOMATIC	TP53	TP53	17	17	7575662	7584559	Intron of TP53(-):1Kb after exon 9	5-UTR of TP53(-):12Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+1191:TP53_chr17:g.7584559inv	IMPPRECISE		MANUAL_OK	3to3	-	8897	40	0	37	0	40
P-0042695-T03-IM7	SOMATIC	ERBB2	ERBB2	17	16	37883773	11921344	Exon 26 of ERBB2(+)	3-UTR of BCAR4(-):1Kb after coding stop	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(16;17)(p13.13;q12)(chr16:g.11921344::chr17:g.37883773)	PRECISE		MANUAL_OK	3to3	-	0	60	0	102	10	103
P-0056156-T02-IM7	SOMATIC	ETV6	NTRK3	15	12	88624274	12011957	Intron of NTRK3(-):45Kb after exon 13	Intron of ETV6(+):5Kb after exon 4	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12011957::chr15:g.88624274)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	60	0	20	10	19
P-0057854-T06-IM7	SOMATIC	RB1	RB1	13	13	48952517	48955572	Intron of RB1(+):1Kb before exon 14	Exon 17 of RB1(+)	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1333-1213_c.1688dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3055	60	0	10	10	10
P-0059834-T03-IM7	SOMATIC	NF1	NF1	17	17	29605275	29667496	Intron of NF1(+):13Kb after exon 35	Intron of NF1(+):26bp before exon 46	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.4835+12918_c.6922-27inv	PRECISE		MANUAL_OK	5to5	-	62221	60	0	20	10	21
P-0060461-T03-IM7	SOMATIC	EWSR1	WT1	22	11	29683178	32417553	Intron of EWSR1(+):55bp after exon 8	Intron of WT1(-):249bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417553::chr22:g.29683178)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	NA	NA	NA	NA	NA
P-0062859-T01-IM7	SOMATIC	KNSTRN	KNSTRN	15	15	40681806	40684670	Exon 5 of KNSTRN(+)	Intron of KNSTRN(+):446bp after exon 8	GRCh37	DELETION	KNSTRN (NM_033286) rearrangement: c.585_c.822+446del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2864	60	0	4	7	4
P-0063163-T02-IM7	SOMATIC	ERCC2	ERCC2	19	19	45872217	45881599	Exon 4 of ERCC2(-)	Promoter of PPP1R13L(-):1Kb from tx start	GRCh37	DELETION	ERCC2 (NM_000400) rearrangement: c.217:ERCC2_chr19:g.45881599del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PPP1R13L:ERCC2}	9382	50	0	5	10	5
P-0064024-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12021920	12031176	Intron of ETV6(+):437bp before exon 5	Intron of ETV6(+):6Kb before exon 6	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-438_c.1010-6203del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	9256	60	0	31	10	37
P-0064051-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140482170	140531641	Intron of BRAF(-):650bp after exon 10	Intron of BRAF(-):3Kb after exon 3	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.504+2768_c.1314+651del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : in frame	49471	60	0	5	10	5
P-0064079-T01-IM7	SOMATIC	MEN1	MEN1	11	11	64337783	64575608	Intron of SLC22A11(+):453bp after exon 9	Intron of MEN1(-):37bp before exon 3	GRCh37	DELETION	MEN1 (NM_000244) rearrangement: c.461-37:MEN1_chr11:g.64337783del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	237825	60	0	21	10	22
P-0064079-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32953472	32961251	Exon 22 of BRCA2(+)	Intron of BRCA2(+):7Kb after exon 24	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.8773_c.9256+6969del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7779	59	0	7	10	8
P-0064080-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	22004290	22008264	3-UTR of CDKN2B(-):2Kb after coding stop	Intron of CDKN2B(-):532bp after exon 1	GRCh37	INVERSION	CDKN2B (NM_004936) rearrangement: c.156+533:CDKN2B_chr9:g.22004290inv	PRECISE		MANUAL_OK	5to5	-	3974	60	0	4	7	4
P-0064140-T01-IM7	SOMATIC	TP53	TP53	17	17	7577837	7579670	Intron of TP53(-):229bp before exon 7	Intron of TP53(-):29bp after exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.96+30_c.673-229del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	1833	43	0	30	10	43
P-0064161-T01-IM7	SOMATIC	TP53	TP53	17	17	7576813	7649872	Intron of TP53(-):39bp after exon 9	Intron of DNAH2(+):3Kb after exon 11	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+40:TP53_chr17:g.7649872del	IMPPRECISE		MANUAL_OK	3to5	-	73059	60	0	61	0	64
P-0064171-T01-IM7	SOMATIC	ERF	ERF	19	19	32881479	42753698	3-UTR of LOC400684(-):15Kb after coding stop	Exon 4 of ERF(-)	GRCh37	INVERSION	ERF (NM_006494) rearrangement: c.566:ERF_chr19:g.32881479inv	PRECISE		MANUAL_OK	5to5	-	9872219	44	0	40	10	45
P-0064182-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56161373	103740793	Intron of MAP3K1(+):90bp after exon 5	IGR: 694Kb before RAB9BP1(+)	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.1152+90:MAP3K1_chr5:g.103740793del	PRECISE		MANUAL_OK	3to5	-	47579420	60	0	31	10	32
P-0064183-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76938482	76955934	Exon 9 of ATRX(-)	Intron of ATRX(-):2Kb before exon 3	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.134-1817_c.2266del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	17452	60	0	88	10	90
P-0064187-T01-IM7	SOMATIC	CHST8	AKT2	19	19	34216587	40739811	Intron of CHST8(+):36Kb after exon 2	Exon 14 of AKT2(-)	GRCh37	INVERSION	CHST8 (NM_001127896) - AKT2 (NM_001626) rearrangement: c.130+36290:CHST8_c.1414:AKT2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CHST8:AKT2}	6523224	60	0	208	10	208
P-0064223-T01-IM7	SOMATIC	BRAF	TBXAS1	7	7	139614105	140494512	Intron of TBXAS1(+):3Kb after exon 8	Intron of BRAF(-):245bp before exon 8	GRCh37	INVERSION	BRAF (NM_004333) - TBXAS1 (NM_001061) rearrangement: c.981-245:BRAF_c.336+2985:TBXAS1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {BRAF:TBXAS1}	880407	60	0	10	10	10
P-0064244-T01-IM7	SOMATIC	TP53	TP53	17	17	7577965	7578573	Intron of TP53(-):211bp after exon 6	Intron of TP53(-):19bp before exon 5	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.376-19_c.672+212dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	608	60	0	70	10	71
P-0064247-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30516112	30672714	Intron of GNL1(-):805bp before exon 9	Exon 10 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.4246:MDC1_chr6:g.30516112inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	156602	47	0	5	0	5
P-0064247-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30672712	30769444	Exon 10 of MDC1(-)	IGR: 58Kb before IER3(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.4248:MDC1_chr6:g.30769444inv	PRECISE		MANUAL_OK	5to5	-	96732	53	0	3	10	3
P-0064248-T01-IM7	SOMATIC	MSI2	MSI2	17	14	55729418	46020781	Intron of MSI2(+):41bp before exon 11	IGR: 348Kb before MIS18BP1(-)	GRCh37	TRANSLOCATION	MSI2 (NM_138962) rearrangement: t(14;17)(q21.2;q22)(chr14:g.46020781::chr17:g.55729418)	PRECISE		MANUAL_OK	5to3	-	0	60	0	42	10	49
P-0064293-T01-IM7	SOMATIC	DNMT3B	DNMT3B	20	20	24615382	31380610	Intron of SYNDIG1(+):31Kb before exon 4	Intron of DNMT3B(+):34bp after exon 9	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.1066+34:DNMT3B_chr20:g.24615382inv	PRECISE		MANUAL_OK	5to5	-	6765228	60	0	4	10	5
P-0064293-T01-IM7	SOMATIC	MSN	AR	X	X	65012794	66909362	IGR: 125Kb before MSN(+)	Intron of AR(+):3Kb after exon 3	GRCh37	DELETION	AR (NM_000044) rearrangement: c.1885+3394:AR_chrX:g.65012794del	PRECISE		MANUAL_OK	3to5	-	1896568	60	0	13	10	13
P-0064296-T01-IM7	SOMATIC	CHEK1	CHEK1	16	11	67249407	125497686	5-UTR of LRRC29(-):8Kb before coding start	Exon 3 of CHEK1(+)	GRCh37	TRANSLOCATION	CHEK1 (NM_001274) rearrangement: t(11;16)(q24.2;q22.1)(chr11:g.125497686::chr16:g.67249407)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CHEK1:LRRC29}	0	60	0	70	10	67
P-0064298-T01-IM7	SOMATIC	RELA	RELA	11	11	25634493	65430212	IGR: 719Kb before ANO3(+)	Intron of RELA(-):84bp after exon 1	GRCh37	DELETION	RELA (NM_021975) rearrangement: c.7+85:RELA_chr11:g.25634493del	PRECISE		MANUAL_OK	3to5	-	39795719	60	0	10	10	10
P-0064298-T01-IM7	SOMATIC	EZH2	EZH2	7	7	148544319	148551050	Exon 2 of EZH2(-)	5-UTR of EZH2(-):46Kb before coding start	GRCh37	DELETION	EZH2 (NM_004456) rearrangement: c.72:EZH2_chr7:g.148551050del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6731	60	0	3	10	3
P-0064300-T01-IM7	SOMATIC	FLT3	FLT3	13	13	19760941	28609976	5-UTR of LOC101928697(+):664bp before coding start	Intron of FLT3(-):95bp after exon 11	GRCh37	INVERSION	FLT3 (NM_004119) rearrangement: c.1418+96:FLT3_chr13:g.19760941inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {LOC101928697:FLT3}	8849035	60	0	12	10	12
P-0064307-T01-IM7	SOMATIC	FLT1	MAPK1	22	13	22200328	28896954	Intron of MAPK1(-):21Kb after exon 1	Exon 21 of FLT1(-)	GRCh37	TRANSLOCATION	FLT1 (NM_002019) - MAPK1 (NM_002745) rearrangement: t(13;22)(q12.2;q11.22)(chr13:g.28896954::chr22:g.22200328)	PRECISE		MANUAL_OK	3to3	-	0	60	0	78	10	78
P-0064309-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55161554	55223058	Intron of EGFR(+):48Kb before exon 2	Intron of EGFR(+):464bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-48425_c.890-465del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	61504	60	0	532	10	1906
P-0064315-T01-IM7	SOMATIC	BAP1	BAP1	3	3	52441176	52441847	Intron of BAP1(-):13bp after exon 7	Intron of BAP1(-):126bp after exon 5	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.375+127_c.580+14del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	671	60	1	42	0	42
P-0064317-T01-IM7	SOMATIC	RASA1	RASA1	5	5	86574149	86685224	Intron of RASA1(+):9Kb after exon 1	Exon 24 of RASA1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.539+9342_c.2940del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	111075	60	0	6	10	6
P-0064319-T01-IM7	SOMATIC	FGFR2	FGFR2	10	10	122887914	123242552	IGR: 277Kb before WDR11(+)	Intron of FGFR2(-):659bp after exon 17	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.2301+660:FGFR2_chr10:g.122887914del	PRECISE		MANUAL_OK	3to5	-	354638	60	0	3	7	3
P-0015814-T05-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15298285	15463181	Intron of NOTCH3(-):136bp before exon 11	Promoter of AKAP8(-):1Kb from tx start	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.1607-136:NOTCH3_chr19:g.15463181del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {AKAP8:NOTCH3}	164896	60	0	22	10	22
P-0015814-T05-IM7	SOMATIC	MSH3	MSH3	5	5	79960718	79974311	Intron of MSH3(+):243bp before exon 3	Intron of MSH3(+):434bp before exon 8	GRCh37	INVERSION	MSH3 (NM_002439) rearrangement: c.359-244_c.1174-435inv	PRECISE		MANUAL_OK	5to5	-	13593	60	0	7	6	7
P-0015814-T05-IM7	SOMATIC	AGO2	PTK2	8	8	141582946	141900887	Exon 3 of AGO2(-)	Intron of PTK2(-):19bp before exon 3	GRCh37	DUPLICATION	AGO2 (NM_012154) - PTK2 (NM_005607) rearrangement: c.301:AGO2_c.35-19:PTK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {AGO2:PTK2}	317941	60	0	49	10	49
P-0040519-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872356	42871163	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-1047:TMPRSS2_chr21:g.39872356del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2998807	60	0	17	0	17
P-0047181-T10-IM7	SOMATIC	SMARCB1	SMARCB1	22	22	24129582	30914612	Intron of SMARCB1(+):133bp after exon 1	IGR: 6Kb before SEC14L6(-)	GRCh37	DELETION	SMARCB1 (NM_003073) rearrangement: c.93+133:SMARCB1_chr22:g.30914612del	PRECISE		MANUAL_OK	3to5	-	6785030	60	0	8	10	8
P-0057256-T05-IM7	SOMATIC	FLT4	FLT4	14	5	39198933	180030233	IGR: 20Kb before LINC00639(-)	Exon 30 of FLT4(-)	GRCh37	TRANSLOCATION	FLT4 (NM_182925) rearrangement: t(5;14)(q35.3;q21.1)(chr5:g.180030233::chr14:g.39198933)	PRECISE		MANUAL_OK	5to3	-	0	60	0	27	10	27
P-0058654-T03-IM7	SOMATIC	KDM6A	KDM6A	X	3	44820558	123591108	Exon 3 of KDM6A(+)	5-UTR of MYLK(-):258Kb before coding start	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(3;X)(q21.1;p11.3)(chr3:g.123591108::chrX:g.44820558)	IMPPRECISE		MANUAL_OK	5to3	-	0	60	0	6	0	6
P-0061601-T05-IM7	SOMATIC	ROS1	ROS1	6	4	117647955	25680004	Intron of ROS1(-):378bp before exon 33	3-UTR of SLC34A2(+):16Kb after coding stop	GRCh37	TRANSLOCATION	ROS1 (NM_002944) rearrangement: t(4;6)(p15.2;q22.1)(chr4:g.25680004::chr6:g.117647955)	PRECISE		MANUAL_OK	3to3	-	0	60	0	13	10	13
P-0062149-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40040032	42876689	IGR: 71Kb before LINC00114(-)	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+3188:TMPRSS2_chr21:g.40040032del	IMPPRECISE		MANUAL_OK	3to5	-	2836657	60	0	51	0	54
P-0062239-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	10	42842889	62393788	Intron of TMPRSS2(-):219bp before exon 11	Intron of ANK3(-):19Kb before exon 2	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(10;21)(q21.2;q22.3)(chr10:g.62393788::chr21:g.42842889)	PRECISE		MANUAL_OK	3to3	-	0	60	0	6	6	6
P-0064100-T02-IM7	SOMATIC	ARID2	ARID2	12	12	46148353	46231479	Intron of ARID2(+):23Kb after exon 3	Exon 10 of ARID2(+)	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.284+23256_c.1319del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	83126	60	0	18	10	19
P-0064227-T01-IM7	SOMATIC	CYLD	CYLD	16	8	50783903	126661345	Exon 3 of CYLD(+)	IGR: 217Kb before TRIB1(+)	GRCh37	TRANSLOCATION	CYLD (NM_001042355) rearrangement: t(8;16)(q24.13;q12.1)(chr8:g.126661345::chr16:g.50783903)	PRECISE		MANUAL_OK	5to5	-	0	60	0	14	10	16
P-0064229-T01-IM7	SOMATIC	TSC2	CRAMP1L	16	16	1699772	2106930	Intron of CRAMP1L(+):3Kb before exon 6	Intron of TSC2(+):160bp after exon 8	GRCh37	DUPLICATION	TSC2 (NM_000548) - CRAMP1L (NM_020825) rearrangement: c.774+160:TSC2_c.828-2725:CRAMP1Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TSC2:CRAMP1L}	407158	47	0	13	10	17
P-0064231-T01-IM7	SOMATIC	DNMT1	DNMT1	19	5	10291801	54722868	Intron of DNMT1(-):240bp before exon 3	Intron of PPAP2A(-):1Kb before exon 5	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(5;19)(q11.2;p13.2)(chr5:g.54722868::chr19:g.10291801)	PRECISE		MANUAL_OK	3to3	-	0	60	0	9	10	9
P-0064234-T01-IM7	SOMATIC	SYK	SYK	9	9	93640023	93643435	Exon 10 of SYK(+)	Intron of SYK(+):2Kb after exon 11	GRCh37	DELETION	SYK (NM_003177) rearrangement: c.1352_c.1581+2200del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3412	60	0	3	5	3
P-0064236-T01-IM7	SOMATIC	LMOD1	SPEN	1	1	16257542	201878126	Exon 11 of SPEN(+)	Intron of LMOD1(-):8Kb before exon 2	GRCh37	INVERSION	LMOD1 (NM_012134) - SPEN (NM_015001) rearrangement: c.262-8247:LMOD1_c.4807:SPENinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LMOD1:SPEN}	185620584	55	0	4	10	5
P-0064236-T01-IM7	SOMATIC	SPEN	SPEN	1	1	16257628	62200846	Exon 11 of SPEN(+)	IGR: 7Kb before INADL(+)	GRCh37	DELETION	SPEN (NM_015001) rearrangement: c.4893:SPEN_chr1:g.62200846del	PRECISE		MANUAL_OK	3to5	-	45943218	60	0	7	10	7
P-0064236-T01-IM7	SOMATIC	BRD4	BRD4	19	19	15355247	15357559	Exon 13 of BRD4(-)	Intron of BRD4(-):2Kb before exon 12	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2159-1986_c.2376del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2312	56	0	3	10	3
P-0064272-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8469062	8471010	Intron of PTPRD(-):2Kb after exon 31	Exon 31 of PTPRD(-)	GRCh37	DELETION	PTPRD (NM_002839) rearrangement: c.3489_c.3504+1933del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1948	60	0	8	10	8
P-0064281-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55241304	55269429	Intron of EGFR(+):309bp before exon 18	Exon 26 of EGFR(+)	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-310_c.3116dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	28125	60	0	250	10	1360
P-0064337-T02-IM7	SOMATIC	EIF4A2	EIF4A2	3	3	186501266	186505217	Promoter of EIF4A2(+):94bp from tx start	Intron of EIF4A2(+):66bp before exon 9	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.910-67:EIF4A2_chr3:g.186501266del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3951	60	0	22	10	22
P-0064342-T01-IM7	SOMATIC	SMAD4	SMAD4	18	12	48592039	60365836	Intron of SMAD4(+):63bp after exon 9	IGR: 283Kb before SLC16A7(+)	GRCh37	TRANSLOCATION	SMAD4 (NM_005359) rearrangement: t(12;18)(q14.1;q21.2)(chr12:g.60365836::chr18:g.48592039)	PRECISE		MANUAL_OK	3to5	-	0	60	0	10	10	10
P-0064342-T01-IM7	SOMATIC	EML4	ALK	2	2	29446534	42476869	Intron of ALK(-):140bp before exon 20	Intron of EML4(+):4Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+4042:EML4_c.3173-140:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13030335	60	0	23	10	23
P-0064343-T01-IM7	SOMATIC	CDK4	CDK4	12	10	58142949	135073985	Intron of CDK4(-):15bp after exon 7	Promoter of ADAM8(-):2Kb from tx start	GRCh37	TRANSLOCATION	CDK4 (NM_000075) rearrangement: t(10;12)(q26.3;q14.1)(chr10:g.135073985::chr12:g.58142949)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CDK4:ADAM8}	0	56	0	34	10	39
P-0064343-T01-IM7	SOMATIC	KDM5A	DHX37	12	12	402339	125448373	Intron of KDM5A(-):4bp before exon 27	Intron of DHX37(-):566bp after exon 15	GRCh37	DUPLICATION	KDM5A (NM_001042603) - DHX37 (NM_032656) rearrangement: c.4456-4:KDM5A_c.2045+567:DHX37dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KDM5A:DHX37}	125046034	23	0	6	10	15
P-0064364-T01-IM7	SOMATIC	TP53	TP53	17	17	7578303	7579899	Intron of TP53(-):14bp before exon 6	Exon 2 of TP53(-)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.14_c.560-14del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1596	60	0	26	10	27
P-0064370-T01-IM7	SOMATIC	SMYD3	SMYD3	1	1	246498538	246523967	Intron of SMYD3(-):130bp after exon 3	Intron of SMYD3(-):6Kb before exon 2	GRCh37	DUPLICATION	SMYD3 (NM_001167740) rearrangement: c.165-5571_c.336+131dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	25429	60	0	8	10	8
P-0064385-T01-IM7	SOMATIC	NF1	NF1	17	17	29543375	29718795	Intron of NF1(+):2Kb after exon 13	5-UTR of RAB11FIP4(+):75bp before coding start	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.1527+1772:NF1_chr17:g.29718795del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NF1:RAB11FIP4}	175420	60	0	18	10	18
P-0064394-T01-IM7	SOMATIC	NCOR1	NCOR1	18	17	63844489	15952207	IGR: 324Kb before CDH19(-)	Exon 41 of NCOR1(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(17;18)(p12;q22.1)(chr17:g.15952207::chr18:g.63844489)	PRECISE		MANUAL_OK	3to5	-	0	60	0	29	10	29
P-0064394-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39819835	42867817	Intron of ERG(-):2Kb before exon 2	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1312:TMPRSS2_c.19-2291:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3047982	60	0	69	10	71
P-0064396-T01-IM7	SOMATIC	APC	APC	5	5	112179807	112190245	Exon 16 of APC(+)	IGR: 7Kb before SRP19(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.8516:APC_chr5:g.112190245del	PRECISE		MANUAL_OK	3to5	-	10438	60	0	13	10	13
P-0064400-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12006247	12007894	Intron of ETV6(+):113bp before exon 4	Intron of ETV6(+):1Kb after exon 4	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.329-114_c.463+1399del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1647	57	0	7	10	8
P-0064414-T01-IM7	SOMATIC	GLI1	GLI1	12	12	57856653	57859388	5-UTR of GLI1(+):821bp before coding start	Intron of GLI1(+):1bp before exon 6	GRCh37	DUPLICATION	GLI1 (NM_005269) rearrangement: c.535-2:GLI1_chr12:g.57856653dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	2735	60	0	10	10	10
P-0064414-T01-IM7	SOMATIC	RB1	RB1	13	13	49017618	49039274	Intron of RB1(+):10Kb before exon 18	Intron of RB1(+):27bp after exon 22	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1696-9511_c.2325+27dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	21656	28	0	10	10	10
P-0064418-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	41399992	41636920	Intron of PTPRT(-):82bp after exon 5	Intron of PTPRT(-):122Kb before exon 2	GRCh37	DUPLICATION	PTPRT (NM_133170) rearrangement: c.89-122348_c.684+83dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	236928	60	0	12	10	12
P-0064423-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39841160	42870404	Intron of ERG(-):24Kb before exon 2	Intron of TMPRSS2(-):288bp before exon 2	GRCh37	INVERSION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.19-23616:ERG_c.56-288:TMPRSS2inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3029244	60	0	8	10	8
P-0064424-T01-IM7	SOMATIC	AXL	AXL	19	12	41737313	33657572	Intron of AXL(+):110bp after exon 6	IGR: 129Kb before SYT10(-)	GRCh37	TRANSLOCATION	AXL (NM_021913) rearrangement: t(12;19)(p11.1;q13.2)(chr12:g.33657572::chr19:g.41737313)	PRECISE		MANUAL_OK	3to5	-	0	60	0	41	10	40
P-0064431-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3776422	3777994	3-UTR of CREBBP(-):1Kb after coding stop	Exon 31 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.7054:CREBBP_chr16:g.3776422del	PRECISE		MANUAL_OK	3to5	-	1572	60	0	33	10	35
P-0064427-T01-IM7	SOMATIC	UPF1	UPF1	19	19	18976616	19234364	Intron of UPF1(+):29bp after exon 22	Intron of TMEM161A(-):2Kb before exon 7	GRCh37	DELETION	UPF1 (NM_002911) rearrangement: c.3237+29:UPF1_chr19:g.19234364del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	257748	60	0	14	10	15
P-0047918-T04-IM7	SOMATIC	FAM131B	BRAF	7	7	140487437	143056532	Intron of BRAF(-):53bp before exon 9	Intron of FAM131B(-):20bp before exon 4	GRCh37	DELETION	FAM131B (NM_001031690) - BRAF (NM_004333) fusion: c.175-20:FAM131B_c.1141-53:BRAFdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FAM131B:BRAF}	2569095	60	0	44	10	45
P-0062310-T02-IM7	SOMATIC	RNF43	RNF43	17	17	56430890	56437577	Promoter of RNF43(-):147bp from tx start	Exon 8 of RNF43(-)	GRCh37	DELETION	RNF43 (NM_017763) rearrangement: c.885:RNF43_chr17:g.56430890del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6687	60	0	65	10	65
P-0062310-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21973467	24938884	Intron of CDKN2A(-):2Kb before exon 2	IGR: 396Kb before IZUMO3(-)	GRCh37	INVERSION	CDKN2A (NM_058195) rearrangement: c.194-2260:CDKN2A_chr9:g.24938884inv	IMPPRECISE		MANUAL_OK	5to5	-	2965417	60	0	11	0	11
P-0062737-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39850206	42875106	Intron of ERG(-):20Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4771:TMPRSS2_c.18+20081:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3024900	60	0	17	10	17
P-0064297-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	14635515	15295142	IGR: 5Kb before MIR639(+)	Exon 16 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.2530:NOTCH3_chr19:g.14635515del	PRECISE		MANUAL_OK	3to5	-	659627	53	0	6	10	10
P-0064437-T01-IM7	SOMATIC	AKT3	AKT3	1	1	243683965	243716162	Intron of AKT3(-):8Kb before exon 12	Exon 10 of AKT3(-)	GRCh37	DUPLICATION	AKT3 (NM_005465) rearrangement: c.1032_c.1252-8237dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	32197	60	0	14	10	14
P-0064437-T01-IM7	SOMATIC	FLT1	FLT1	13	13	28883893	28959101	Intron of FLT1(-):829bp before exon 28	Exon 14 of FLT1(-)	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.2037_c.3636-829del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	75208	60	0	3	7	3
P-0064443-T01-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4100172	4102390	Intron of MAP2K2(-):760bp before exon 7	Exon 4 of MAP2K2(-)	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.512_c.706-760inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2218	60	0	41	10	52
P-0064471-T01-IM7	SOMATIC	BRIP1	HSF5	17	17	56501360	59857506	Intron of HSF5(-):2Kb before exon 6	Intron of BRIP1(-):115bp after exon 13	GRCh37	DELETION	BRIP1 (NM_032043) - HSF5 (NM_001080439) rearrangement: c.1935+116:BRIP1_c.1721-1569:HSF5del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {BRIP1:HSF5}	3356146	60	0	6	0	7
P-0064471-T01-IM7	SOMATIC	ACVR1	ACVR1	2	2	158634726	158636825	Exon 5 of ACVR1(-)	Intron of ACVR1(-):23bp after exon 4	GRCh37	INVERSION	ACVR1 (NM_001111067) rearrangement: c.331+24_c.460inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2099	60	0	107	10	123
P-0064471-T01-IM7	SOMATIC	FBXW7	FBXW7	4	4	153231556	153245524	IGR: 11Kb before FBXW7(-)	Exon 11 of FBXW7(-)	GRCh37	DELETION	FBXW7 (NM_033632) rearrangement: c.1667:FBXW7_chr4:g.153231556del	PRECISE		MANUAL_OK	3to5	-	13968	60	0	2	3	2
P-0064473-T01-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4065522	4116467	5-UTR of ZBTB7A(-):18Kb before coding start	Intron of MAP2K2(-):949bp after exon 2	GRCh37	DELETION	MAP2K2 (NM_030662) rearrangement: c.303+950:MAP2K2_chr19:g.4065522del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MAP2K2:ZBTB7A}	50945	60	0	6	8	6
P-0064473-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55270217	55272746	Exon 27 of EGFR(+)	Intron of EGFR(+):202bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.3170_c.3272-203del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2529	60	0	115	10	124
P-0064485-T01-IM7	SOMATIC	BAP1	BAP1	15	3	67508014	52439761	Intron of AAGAB(-):6Kb before exon 6	Intron of BAP1(-):19bp after exon 10	GRCh37	TRANSLOCATION	BAP1 (NM_004656) rearrangement: t(3;15)(p21.1;q23)(chr3:g.52439761::chr15:g.67508014)	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	22	0	23
P-0064485-T01-IM7	SOMATIC	ERF	ERF	19	10	42752840	126596712	Exon 4 of ERF(-)	IGR: 34Kb before ZRANB1(+)	GRCh37	TRANSLOCATION	ERF (NM_006494) rearrangement: t(10;19)(q26.13;q13.2)(chr10:g.126596712::chr19:g.42752840)	PRECISE		MANUAL_OK	3to5	-	0	60	0	7	8	7
P-0005783-T02-IM6	SOMATIC	MTOR	MTOR	1	1	11207817	11273316	Intron of MTOR(-):969bp before exon 32	Intron of MTOR(-):139bp after exon 21	GRCh37	DELETION	MTOR (NM_004958) rearrangement: c.3285+140_c.4571-969del	PRECISE		MANUAL_OK	3to5	Deletion of 10 exons : out of frame	65499	NA	0	11	10	12
P-0018237-T02-IM7	SOMATIC	CDH1	CDH1	16	16	68846992	68847903	Intron of CDH1(+):223bp before exon 9	Intron of CDH1(+):505bp after exon 9	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.1138-224_c.1320+505del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	911	55	0	3	0	3
P-0018237-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15281768	15414411	Intron of NOTCH3(-):132bp before exon 26	IGR: 50Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4737-132:NOTCH3_chr19:g.15414411del	IMPPRECISE		MANUAL_OK	3to5	-	132643	60	0	7	0	7
P-0018237-T02-IM7	SOMATIC	EIF4A2	EIF4A2	3	3	186502807	186505420	Exon 4 of EIF4A2(+)	Intron of EIF4A2(+):47bp after exon 9	GRCh37	DELETION	EIF4A2 (NM_001967) rearrangement: c.265_c.999+47del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2613	60	0	95	10	185
P-0018237-T02-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56156211	56167993	Intron of MAP3K1(+):469bp after exon 3	Intron of MAP3K1(+):135bp after exon 7	GRCh37	DUPLICATION	MAP3K1 (NM_005921) rearrangement: c.834+469_c.1423+135dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	11782	60	0	80	10	91
P-0022001-T01-IM6	SOMATIC	KMT2D	TMTC1	12	12	29920175	49434234	Intron of TMTC1(-):655bp after exon 2	Exon 31 of KMT2D(-)	GRCh37	DELETION	KMT2D (NM_003482) - TMTC1 (NM_001193451) rearrangement: c.7319:KMT2D_c.480+656:TMTC1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {KMT2D:TMTC1}	19514059	NA	0	14	10	31
P-0022001-T01-IM6	SOMATIC	CDKN2B	CDKN2B	9	9	21866156	22008064	Promoter of MTAP(+):64Kb from tx start	Intron of CDKN2B(-):732bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+733:CDKN2B_chr9:g.21866156del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	141908	NA	0	5	7	5
P-0023926-T01-IM6	SOMATIC	BRD4	BRD4	19	19	15354031	15421186	Exon 14 of BRD4(-)	IGR: 43Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: chr19:g.15421186_ c.2849BRD4del	PRECISE		MANUAL_OK	3to5	-	67155	NA	0	12	8	16
P-0023926-T01-IM6	SOMATIC	ASXL2	ASXL2	2	2	25927336	25967159	IGR: 35Kb before ASXL2(-)	Exon 12 of ASXL2(-)	GRCh37	INVERSION	ASXL2 (NM_018263) rearrangement: c.2047_chr2:g.25927336inv	PRECISE		MANUAL_OK	3to3	-	39823	NA	0	13	10	14
P-0025657-T02-IM6	SOMATIC	STAT3	STAT3	17	17	40484290	40486010	Intron of STAT3(-):741bp before exon 11	Exon 9 of STAT3(-)	GRCh37	DELETION	STAT3 (NM_139276) rearrangement: c.855_c.1050-741del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1720	NA	0	8	10	8
P-0037025-T02-IM7	SOMATIC	PREX2	PREX2	8	3	69032406	123590713	Intron of PREX2(+):24bp before exon 29	5-UTR of MYLK(-):258Kb before coding start	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(3;8)(q21.1;q13.2)(chr3:g.123590713::chr8:g.69032406)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {MYLK:PREX2}	0	60	0	16	0	17
P-0048929-T03-IM7	SOMATIC	CIC	CITED1	X	19	71521805	42799287	Exon 3 of CITED1(-)	Exon 20 of CIC(+)	GRCh37	TRANSLOCATION	CIC (NM_015125) - CITED1 (NM_001144885) rearrangement: t(19;X)(q13.2;q13.1)(chr19:g.42799287::chrX:g.71521805)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CIC:CITED1}	0	60	0	59	10	59
P-0059599-T02-IM7	SOMATIC	TP53	TP53	17	17	7578308	7599987	Intron of TP53(-):19bp before exon 6	Intron of WRAP53(+):4Kb before exon 5	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.560-19:TP53_chr17:g.7599987del	PRECISE		MANUAL_OK	3to5	-	21679	60	0	35	10	39
P-0060320-T02-IM7	SOMATIC	SRC	SRC	20	12	36024376	114248294	Intron of SRC(+):188bp before exon 8	IGR: 6Kb before RBM19(-)	GRCh37	TRANSLOCATION	SRC (NM_198291) rearrangement: t(12;20)(q24.13;q11.23)(chr12:g.114248294::chr20:g.36024376)	PRECISE		MANUAL_OK	5to5	-	0	60	0	5	7	5
P-0060320-T02-IM7	SOMATIC	SMARCB1	SMARCB1	22	22	24051328	24145702	3-UTR of GUSBP11(-):8Kb after coding stop	Intron of SMARCB1(+):93bp after exon 5	GRCh37	INVERSION	SMARCB1 (NM_003073) rearrangement: c.628+93:SMARCB1_chr22:g.24051328inv	IMPPRECISE		MANUAL_OK	3to3	-	94374	60	0	6	0	6
P-0062730-T02-IM7	SOMATIC	JAK1	JAK1	1	1	37433880	65344812	Intron of GRIK3(-):66Kb after exon 1	Exon 4 of JAK1(-)	GRCh37	INVERSION	JAK1 (NM_002227) rearrangement: c.225:JAK1_chr1:g.37433880inv	PRECISE		MANUAL_OK	3to3	-	27910932	25	0	2	7	2
P-0062959-T01-IM7	SOMATIC	MET	MET	7	7	110336687	116413806	Intron of IMMP2L(-):33Kb before exon 7	Intron of MET(+):1Kb before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.3029-1129:MET_chr7:g.110336687del	PRECISE		MANUAL_OK	3to5	-	6077119	48	0	3	10	5
P-0064112-T02-IM7	SOMATIC	PIK3C2G	PIK3C2G	18	12	27432680	18658083	IGR: 446Kb before MIR302F(+)	Intron of PIK3C2G(+):142bp before exon 23	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement: t(12;18)(p12.3;q12.1)(chr12:g.18658083::chr18:g.27432680)	PRECISE		MANUAL_OK	5to5	-	0	60	0	26	10	26
P-0064458-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39926092	42876244	Intron of ERG(-):21Kb after exon 3	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+3633:TMPRSS2_c.39+21494:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2950152	60	0	72	10	75
P-0064460-T01-IM7	SOMATIC	APC	APC	5	5	112175183	112176923	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3892_c.5632del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1740	60	0	8	9	8
P-0064463-T01-IM7	SOMATIC	RBM44	SOCS1	16	2	11348803	238736379	Exon 2 of SOCS1(-)	Intron of RBM44(+):233bp after exon 12	GRCh37	TRANSLOCATION	RBM44 (NM_001080504) - SOCS1 (NM_003745) rearrangement: t(2;16)(q37.3;p13.13)(chr2:g.238736379::chr16:g.11348803)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RBM44:SOCS1}	0	60	0	7	8	7
P-0064531-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21969970	21971169	Intron of CDKN2A(-):930bp after exon 2	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.457+931:CDKN2A_c.232:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1199	60	0	19	10	20
P-0064537-T01-IM7	SOMATIC	CHEK1	CHEK1	11	11	125514029	125515315	Exon 10 of CHEK1(+)	Intron of CHEK1(+):777bp after exon 11	GRCh37	DUPLICATION	CHEK1 (NM_001274) rearrangement: c.967_c.1233+777dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1286	60	0	2	9	2
P-0064541-T01-IM7	SOMATIC	SDC4	ROS1	20	6	43962537	117650669	Intron of SDC4(-):828bp before exon 3	Intron of ROS1(-):60bp before exon 32	GRCh37	TRANSLOCATION	SDC4 (NM_002999) - ROS1 (NM_002944) fusion: t(6;20)(q22.1;q13.12)(chr6:g.117650669::chr20:g.43962537)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SDC4:ROS1}	0	60	0	126	10	128
P-0064548-T01-IM7	SOMATIC	MET	MET	7	7	116413602	116418723	Intron of MET(+):1Kb before exon 15	Intron of MET(+):106bp before exon 17	GRCh37	DUPLICATION	MET (NM_000245) rearrangement: c.3029-1333_c.3341-107dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : in frame	5121	60	0	2	7	2
P-0064551-T01-IM7	SOMATIC	ARAF	ARAF	X	X	47419392	47422406	Promoter of ARAF(+):1Kb from tx start	Exon 2 of ARAF(+)	GRCh37	DELETION	ARAF (NM_001654) rearrangement: c.40:ARAF_chrX:g.47419392del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3014	60	0	22	10	25
P-0064554-T01-IM7	SOMATIC	NEGR1	NEGR1	1	1	72163892	72369201	Intron of NEGR1(-):70bp before exon 4	Intron of NEGR1(-):32Kb after exon 2	GRCh37	DELETION	NEGR1 (NM_173808) rearrangement: c.409+31561_c.536-70del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	205309	60	0	3	6	3
P-0064554-T01-IM7	SOMATIC	SMTNL2	STAT5A	17	17	4500659	40459598	Intron of SMTNL2(+):41bp after exon 7	Intron of STAT5A(+):12bp before exon 16	GRCh37	DELETION	SMTNL2 (NM_001114974) - STAT5A (NM_003152) rearrangement: c.1259+41:SMTNL2_c.1776-13:STAT5Adel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {SMTNL2:STAT5A}	35958939	60	0	50	10	52
P-0064554-T01-IM7	SOMATIC	FLCN	FLCN	17	3	17118458	128782698	Intron of FLCN(-):40bp after exon 12	Promoter of GP9(+):3Kb from tx start	GRCh37	TRANSLOCATION	FLCN (NM_144997) rearrangement: t(3;17)(q21.3;p11.2)(chr3:g.128782698::chr17:g.17118458)	PRECISE		MANUAL_OK	3to5	-	0	60	0	113	10	115
P-0064556-T01-IM7	SOMATIC	ERBB4	ERBB4	7	2	49717470	212286944	IGR: 96Kb before VWC2(+)	Intron of ERBB4(-):115bp before exon 24	GRCh37	TRANSLOCATION	ERBB4 (NM_005235) rearrangement: t(2;7)(q34;p12.2)(chr2:g.212286944::chr7:g.49717470)	PRECISE		MANUAL_OK	3to3	-	0	60	0	16	10	16
P-0064573-T01-IM7	SOMATIC	FGFR2	SKI	10	1	123242232	2207811	Intron of FGFR2(-):979bp after exon 17	Intron of SKI(+):27Kb before exon 2	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - SKI (NM_003036) fusion: t(1;10)(p36.33;q26.13)(chr1:g.2207811::chr10:g.123242232)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:SKI}	0	60	0	10	10	11
P-0064587-T01-IM7	SOMATIC	NF1	NF1	17	17	29585296	29589404	Intron of NF1(+):65bp before exon 31	Intron of NF1(+):529bp after exon 34	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4174-66_c.4724+529dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	4108	60	0	195	10	223
P-0064588-T01-IM7	SOMATIC	DOCK4	BRAF	7	7	111386092	140483872	Intron of DOCK4(-):297bp after exon 43	Intron of BRAF(-):915bp before exon 10	GRCh37	DUPLICATION	DOCK4 (NM_014705) - BRAF (NM_004333) fusion: c.4650+298:DOCK4_c.1178-915:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {DOCK4:BRAF}	29097780	60	0	6	10	7
P-0064588-T01-IM7	SOMATIC	EZH2	EZH2	7	7	148515519	148516773	Intron of EZH2(-):310bp before exon 10	Exon 9 of EZH2(-)	GRCh37	INVERSION	EZH2 (NM_004456) rearrangement: c.914_c.1000-310inv	PRECISE		MANUAL_OK	3to3	-	1254	60	0	2	6	2
P-0012114-T06-IM7	SOMATIC	DOT1L	DOT1L	19	19	2210154	2222594	Intron of DOT1L(+):244bp before exon 13	Intron of DOT1L(+):36bp after exon 24	GRCh37	DUPLICATION	DOT1L (NM_032482) rearrangement: c.1006-245_c.3390+36dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : in frame	12440	60	0	33	10	33
P-0012114-T06-IM7	SOMATIC	MET	MYH15	7	3	116412012	108193597	Exon 14 of MET(+)	Intron of MYH15(-):2Kb after exon 13	GRCh37	TRANSLOCATION	MET (NM_000245) - MYH15 (NM_014981) rearrangement: t(3;7)(q13.13;q31.2)(chr3:g.108193597::chr7:g.116412012)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {MET:MYH15}	0	60	0	52	10	52
P-0012114-T06-IM7	SOMATIC	CD47	MET	7	3	116412066	107772171	Intron of MET(+):23bp after exon 14	Intron of CD47(-):1Kb before exon 8	GRCh37	TRANSLOCATION	CD47 (NM_001777) - MET (NM_000245) fusion: t(3;7)(q13.12;q31.2)(chr3:g.107772171::chr7:g.116412066)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CD47:MET}	0	60	0	15	10	16
P-0014262-T03-IM7	SOMATIC	ARID2	ARID2	12	12	46035340	46240564	IGR: 84Kb before LINC00938(-)	Intron of ARID2(+):74bp before exon 12	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.1499-75:ARID2_chr12:g.46035340inv	PRECISE		MANUAL_OK	5to5	-	205224	60	0	17	10	18
P-0014262-T03-IM7	SOMATIC	CARD11	CARD11	7	7	2950518	2963794	Intron of CARD11(-):719bp before exon 24	Intron of CARD11(-):72bp after exon 15	GRCh37	DELETION	CARD11 (NM_032415) rearrangement: c.1940+73_c.3145-719del	PRECISE		MANUAL_OK	3to5	Deletion of 8 exons : out of frame	13276	60	0	53	10	53
P-0014262-T04-IM7	SOMATIC	ARID2	ARID2	12	12	46035340	46240564	IGR: 84Kb before LINC00938(-)	Intron of ARID2(+):74bp before exon 12	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.1499-75:ARID2_chr12:g.46035340inv	PRECISE		MANUAL_OK	5to5	-	205224	60	0	8	10	8
P-0042990-T03-IM7	SOMATIC	TMPRSS2	ERG	21	21	39890168	42868022	Intron of ERG(-):57Kb after exon 3	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1517:TMPRSS2_c.39+57418:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2977854	60	0	111	10	113
P-0047336-T02-IM7	SOMATIC	RAD51	RAD51	15	15	41012818	41023260	Intron of RAD51(+):2Kb after exon 6	Exon 10 of RAD51(+)	GRCh37	DELETION	RAD51 (NM_002875) rearrangement: c.530+1721_c.904del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10442	60	0	23	10	23
P-0047336-T02-IM7	SOMATIC	SESN1	SESN1	6	6	109282690	109323519	Intron of ARMC2(+):84bp before exon 13	Exon 2 of SESN1(-)	GRCh37	DUPLICATION	SESN1 (NM_014454) rearrangement: c.307:SESN1_chr6:g.109282690dup	PRECISE		MANUAL_OK	5to3	-	40829	60	0	23	10	23
P-0049139-T02-IM7	SOMATIC	ATM	ATM	11	11	108180896	113957163	Exon 39 of ATM(+)	Intron of ZBTB16(+):22Kb after exon 2	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.5772:ATM_chr11:g.113957163inv	PRECISE		MANUAL_OK	5to5	-	5776267	60	0	34	10	42
P-0057382-T02-IM7	SOMATIC	PDE6A	PDGFRB	5	5	149298575	149515394	Intron of PDE6A(-):3Kb after exon 5	Exon 3 of PDGFRB(-)	GRCh37	DUPLICATION	PDE6A (NM_000440) - PDGFRB (NM_002609) rearrangement: c.933+2623:PDE6A_c.88:PDGFRBdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PDE6A:PDGFRB}	216819	60	0	3	5	3
P-0063545-T03-IM7	SOMATIC	TCF3	TCF3	19	3	1615716	73401371	Exon 16 of TCF3(-)	IGR: 30Kb before PDZRN3(-)	GRCh37	TRANSLOCATION	TCF3 (NM_001136139) rearrangement: t(3;19)(p13;p13.3)(chr3:g.73401371::chr19:g.1615716)	PRECISE		MANUAL_OK	3to3	-	0	60	0	5	8	5
P-0063545-T03-IM7	SOMATIC	NOTCH4	NOTCH4	6	6	32165172	32914686	Exon 27 of NOTCH4(-)	Promoter of HLA-DMA(-):2Kb from tx start	GRCh37	DUPLICATION	NOTCH4 (NM_004557) rearrangement: c.4956:NOTCH4_chr6:g.32914686dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH4:HLA-DMA}	749514	60	0	16	10	16
P-0063545-T03-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139404288	139415893	Exon 18 of NOTCH1(-)	Intron of NOTCH1(-):1Kb after exon 4	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.742+1409_c.2866del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11605	60	0	28	10	28
P-0064078-T02-IM7	SOMATIC	KDM5C	PSD3	X	8	53245206	18754762	Intron of KDM5C(-):48bp before exon 7	Intron of PSD3(-):25Kb before exon 3	GRCh37	TRANSLOCATION	KDM5C (NM_004187) - PSD3 (NM_015310) rearrangement: t(8;X)(p22;p11.22)(chr8:g.18754762::chrX:g.53245206)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KDM5C:PSD3}	0	60	0	80	10	84
P-0064078-T02-IM7	SOMATIC	ATRX	ATRX	X	X	76952014	82710190	Intron of ATRX(-):50bp after exon 5	IGR: 53Kb before POU3F4(+)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.370+51:ATRX_chrX:g.82710190inv	PRECISE		MANUAL_OK	5to5	-	5758176	60	0	49	10	50
P-0064090-T03-IM7	SOMATIC	RECQL	RECQL	12	3	21630740	42851932	Exon 7 of RECQL(-)	5-UTR of ACKR2(+):54Kb before coding start	GRCh37	TRANSLOCATION	RECQL (NM_032941) rearrangement: t(3;12)(p22.1;p12.1)(chr3:g.42851932::chr12:g.21630740)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	10	10	10
P-0064090-T03-IM7	SOMATIC	ESR1	ESR1	9	6	75516001	152322911	3-UTR of ALDH1A1(-):122bp after coding stop	Intron of ESR1(+):10Kb before exon 6	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;9)(q25.1;q21.13)(chr6:g.152322911::chr9:g.75516001)	PRECISE		MANUAL_OK	3to5	-	0	60	0	9	10	9
P-0064324-T02-IM7	SOMATIC	EWSR1	CREB1	22	2	29683830	208439686	Intron of EWSR1(+):707bp after exon 8	Intron of CREB1(+):309bp before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB1 (NM_134442) fusion: t(2;22)(q33.3;q12.2)(chr2:g.208439686::chr22:g.29683830)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:CREB1}	0	60	0	47	10	47
P-0064520-T02-IM7	SOMATIC	FGFR1	FGFR1	8	8	38283720	40924764	Exon 7 of FGFR1(-)	IGR: 195Kb before SFRP1(-)	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.758:FGFR1_chr8:g.40924764del	IMPPRECISE		MANUAL_OK	3to5	-	2641044	60	0	6	0	6
P-0064547-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831448	42875108	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4769:TMPRSS2_c.19-13904:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3043660	60	0	208	10	214
P-0064553-T01-IM7	SOMATIC	NCOR1	NCOR1	17	15	15949951	94423646	Intron of NCOR1(-):313bp after exon 42	Promoter of LOC101927153(+):24Kb from tx start	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(15;17)(q26.2;p12)(chr15:g.94423646::chr17:g.15949951)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {NCOR1:LOC101927153}	0	60	0	7	9	7
P-0064617-T01-IM7	SOMATIC	IRF4	IRF4	6	6	370949	397147	IGR: 21Kb before IRF4(+)	Exon 5 of IRF4(+)	GRCh37	INVERSION	IRF4 (NM_002460) rearrangement: c.532:IRF4_chr6:g.370949inv	PRECISE		MANUAL_OK	3to3	-	26198	55	0	11	10	11
P-0064618-T01-IM7	SOMATIC	EWSR1	BNC2	22	9	29683317	16790499	Intron of EWSR1(+):194bp after exon 8	Intron of BNC2(-):52Kb before exon 2	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - BNC2 (NM_017637) rearrangement: t(9;22)(p22.2;q12.2)(chr9:g.16790499::chr22:g.29683317)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {EWSR1:BNC2}	0	60	0	37	10	37
P-0064624-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37682364	41765607	Exon 13 of CDK12(+)	IGR: 48Kb before MEOX1(-)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3555:CDK12_chr17:g.41765607inv	PRECISE		MANUAL_OK	3to3	-	4083243	60	0	179	10	178
P-0064625-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	26325016	27092693	Promoter of PAFAH2(-):39Kb from tx start	Intron of ARID1A(+):18bp before exon 9	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.2733-19:ARID1A_chr1:g.26325016dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	767677	60	0	10	10	10
P-0064627-T01-IM7	SOMATIC	PRKAR1A	PRKAR1A	17	17	66526142	69610794	Exon 10 of PRKAR1A(+)	IGR: 407Kb before LOC102723505(-)	GRCh37	INVERSION	PRKAR1A (NM_212471) rearrangement: c.973:PRKAR1A_chr17:g.69610794inv	PRECISE		MANUAL_OK	5to5	-	3084652	60	0	15	10	16
P-0064628-T01-IM7	SOMATIC	MGA	MGA	17	15	35942656	41961517	Intron of SYNRG(-):2Kb after exon 6	Exon 2 of MGA(+)	GRCh37	TRANSLOCATION	MGA (NM_001164273) rearrangement: t(15;17)(q15.1;q12)(chr15:g.41961517::chr17:g.35942656)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	21	10	21
P-0064649-T01-IM7	SOMATIC	TERT	TERT	12	5	65576141	1295360	Intron of LEMD3(+):11Kb after exon 1	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement:  t(5;12)(p15.33;q14.3)(chr5:g.1295360::chr12:g.65576141)	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {LEMD3:TERT}	0	60	0	86	0	87
P-0064649-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	30882382	31526366	IGR: 311Kb before CDH6(+)	Exon 4 of DROSHA(-)	GRCh37	DELETION	DROSHA (NM_013235) rearrangement: c.674:DROSHA_chr5:g.30882382del	PRECISE		MANUAL_OK	3to5	-	643984	60	0	300	10	326
P-0064650-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739244	1808781	Intron of TACC3(+):80bp before exon 10	Intron of FGFR3(+):61bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-62:FGFR3_c.1837-81:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69537	60	0	32	10	32
P-0064653-T01-IM7	SOMATIC	RHEB	ACTR3B	7	7	151216474	152528990	Intron of RHEB(-):71bp after exon 1	Intron of ACTR3B(+):7Kb after exon 9	GRCh37	INVERSION	RHEB (NM_005614) - ACTR3B (NM_020445) rearrangement: c.52+72:RHEB_c.951+6783:ACTR3Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {RHEB:ACTR3B}	1312516	22	0	20	10	47
P-0064661-T01-IM7	SOMATIC	SDHC	SDHC	1	1	161298186	245005286	Exon 3 of SDHC(+)	Exon 2 of COX20(+)	GRCh37	DUPLICATION	SDHC (NM_003001) rearrangement: c.78:SDHC_chr1:g.245005286dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {COX20:SDHC}	83707100	54	0	6	0	6
P-0064661-T01-IM7	SOMATIC	CCND3	CCND3	6	6	41882488	41908466	Intron of MED20(-):2Kb after exon 2	Intron of CCND3(-):143bp before exon 2	GRCh37	INVERSION	CCND3 (NM_001760) rearrangement: c.199-143:CCND3_chr6:g.41882488inv	IMPPRECISE		MANUAL_OK	3to3	-	25978	60	0	7	0	7
P-0064723-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2128931	2132504	Intron of TSC2(+):101bp before exon 27	Exon 32 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.2967-102_c.3882del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3573	60	0	15	10	16
P-0064723-T01-IM7	SOMATIC	ERBB4	ERBB4	2	2	212248303	212702168	3-UTR of ERBB4(-):36bp after coding stop	Intron of ERBB4(-):49Kb before exon 4	GRCh37	DELETION	ERBB4 (NM_005235) rearrangement: c.422-49284:ERBB4_chr2:g.212248303del	PRECISE		MANUAL_OK	3to5	-	453865	60	0	7	10	7
P-0064723-T01-IM7	SOMATIC	PTCH1	PTCH1	9	9	98209176	98210409	3-UTR of PTCH1(-):17bp after coding stop	Intron of PTCH1(-):676bp before exon 23	GRCh37	DELETION	PTCH1 (NM_000264) rearrangement: c.3805-676:PTCH1_chr9:g.98209176del	PRECISE		MANUAL_OK	3to5	-	1233	60	0	17	10	17
P-0064760-T01-IM7	SOMATIC	NFKBIA	NFKBIA	14	14	35871731	35878298	Exon 5 of NFKBIA(-)	IGR: 8Kb before NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.775:NFKBIA_chr14:g.35878298del	PRECISE		MANUAL_OK	3to5	-	6567	60	0	26	10	29
P-0057272-T02-IM7	SOMATIC	ZFHX3	ZFHX3	16	16	72828257	72977289	Exon 9 of ZFHX3(-)	Intron of ZFHX3(-):7Kb after exon 3	GRCh37	DELETION	ZFHX3 (NM_006885) rearrangement: c.3216+7079_c.8324del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	149032	48	0	8	10	8
P-0057272-T02-IM7	SOMATIC	DOT1L	DOT1L	19	9	2225328	71859852	Intron of DOT1L(+):58bp before exon 26	Intron of TJP2(+):2Kb before exon 18	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(9;19)(q21.11;p13.3)(chr9:g.71859852::chr19:g.2225328)	PRECISE		MANUAL_OK	5to5	-	0	60	0	11	10	11
P-0058643-T02-IM7	SOMATIC	MGA	MGA	15	15	42034480	42034995	Intron of MGA(+):263bp before exon 15	Exon 15 of MGA(+)	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.4586-264_c.4837del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	515	60	0	20	0	22
P-0058643-T02-IM7	SOMATIC	JAK3	JAK3	19	19	17938491	17941244	Intron of JAK3(-):772bp before exon 24	Intron of JAK3(-):67bp after exon 22	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.3096+68_c.3208-772inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2753	54	0	10	10	12
P-0058643-T02-IM7	SOMATIC	JAK3	JAK3	19	19	17941094	32379970	Intron of JAK3(-):67bp before exon 23	IGR: 137Kb before LINC01533(+)	GRCh37	DELETION	JAK3 (NM_000215) rearrangement: c.3097-67:JAK3_chr19:g.32379970del	IMPPRECISE		MANUAL_OK	3to5	-	14438876	60	0	7	0	7
P-0064654-T01-IM7	SOMATIC	PREX2	PREX2	8	1	68939475	752583	Exon 5 of PREX2(+)	Promoter of FAM87B(+):167bp from tx start	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(1;8)(p36.33;q13.2)(chr1:g.752583::chr8:g.68939475)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PREX2:FAM87B}	0	60	0	10	10	18
P-0064660-T01-IM7	SOMATIC	EGFR	CDH7	18	7	63486938	55254206	Intron of CDH7(+):2Kb before exon 5	Intron of EGFR(+):5Kb after exon 20	GRCh37	TRANSLOCATION	EGFR (NM_005228) - CDH7 (NM_033646) rearrangement: t(7;18)(p11.2;q22.1)(chr7:g.55254206::chr18:g.63486938)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EGFR:CDH7}	0	60	0	12	10	12
P-0064737-T01-IM7	SOMATIC	AKT2	AKT2	19	19	35689951	40745832	IGR: 26Kb before FAM187B(-)	Intron of AKT2(-):119bp after exon 7	GRCh37	INVERSION	AKT2 (NM_001626) rearrangement: c.639+120:AKT2_chr19:g.35689951inv	PRECISE		MANUAL_OK	5to5	-	5055881	60	0	47	10	52
P-0064738-T01-IM7	SOMATIC	EWSR1	ATF1	22	12	29687328	51193890	Intron of EWSR1(+):225bp before exon 10	Intron of ATF1(+):4Kb after exon 3	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51193890::chr22:g.29687328)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:ATF1}	0	60	0	37	10	37
P-0064741-T01-IM7	SOMATIC	SESN3	SESN3	11	7	94908591	95269958	Intron of SESN3(-):70bp after exon 9	IGR: 57Kb before PDK4(-)	GRCh37	TRANSLOCATION	SESN3 (NM_144665) rearrangement: t(7;11)(q21.3;q21)(chr7:g.95269958::chr11:g.94908591)	PRECISE		MANUAL_OK	5to5	-	0	60	0	31	10	33
P-0064741-T01-IM7	SOMATIC	NF1	NF1	17	17	29551376	29557130	Intron of NF1(+):736bp before exon 17	Intron of NF1(+):138bp after exon 22	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1846-737_c.2990+138dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : out of frame	5754	60	0	13	10	19
P-0064741-T01-IM7	SOMATIC	GNAS	GNAS	20	20	57478519	57484052	Intron of GNAS(+):66bp before exon 4	Intron of GNAS(+):164bp before exon 7	GRCh37	DUPLICATION	GNAS (NM_000516) rearrangement: c.258-67_c.531-165dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	5533	60	0	133	10	137
P-0063963-T02-IM7	SOMATIC	RET	RET	10	5	43613891	51584013	Exon 13 of RET(+)	IGR: 500Kb before PELO(+)	GRCh37	TRANSLOCATION	RET (NM_020975) rearrangement: t(5;10)(q11.2;q11.21)(chr5:g.51584013::chr10:g.43613891)	PRECISE		MANUAL_OK	3to3	-	0	60	0	6	10	6
P-0064698-T01-IM7	SOMATIC	ALK	ALK	2	2	29754794	29755400	Exon 4 of ALK(-)	Intron of ALK(-):418bp before exon 4	GRCh37	DUPLICATION	ALK (NM_004304) rearrangement: c.953-418_c.1141dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	606	60	0	35	10	38
P-0064796-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39859529	42838080	Intron of ERG(-):11Kb after exon 1	Exon 14 of TMPRSS2(-)	GRCh37	DUPLICATION	ERG (NM_182918) - TMPRSS2 (NM_001135099) rearrangement: c.18+10758:ERG_c.1579:TMPRSS2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ERG:TMPRSS2}	2978551	60	0	24	10	24
P-0064837-T01-IM7	SOMATIC	SRC	SRC	20	20	36028247	36031758	Intron of SRC(+):270bp before exon 10	Exon 14 of SRC(+)	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.860-271_c.1587inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3511	33	0	11	10	14
P-0004520-T01-IM5	SOMATIC	FGFR2	BICC1	10	10	60555176	123240269	Intron of BICC1(+): 924bp before exon 10	Intron of FGFR2(-): 734bp before exon 18	GRCh37	INVERSION	FGFR2(NM_000141) - BICC1( NM_001080512) Fusion (FGFR2 exon 17 fused with exon 10 of BICC1) :  c.2302-734:FGFR2_c.1180-924:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein fusion: in frame (FGFR2-BICC1)	62685093	NA	0	56	56	52
P-0009071-T01-IM5	SOMATIC	TMEM127	TMEM127	2	2	96919710	123605124	Exon 4 of TMEM127(-)	IGR: 1Mb before TSN(+)	GRCh37	DELETION	TMEM127 (NM_001193304) rearrangement : c.553:TMEM127_chr2:g.123605124del	PRECISE		MANUAL_OK	3to5	-	26685414	NA	0	11	23	11
P-0025754-T01-IM6	SOMATIC	ATR	ATR	3	3	119493103	142217651	IGR: 6Kb before NR1I2(+)	Intron of ATR(-):35bp before exon 32	GRCh37	DUPLICATION	ATR (NM_001184) Rearrangement : chr3:g.119493103_c.5381-35:ATRdup	PRECISE		MANUAL_OK	5to3	-	22724548	NA	0	319	10	441
P-0025754-T02-IM6	SOMATIC	ATR	ATR	3	3	119493103	142217651	IGR: 6Kb before NR1I2(+)	Intron of ATR(-):35bp before exon 32	GRCh37	DUPLICATION	ATR ()NM_001184) rearrangement: c.5381-35:ATR_chr3:g.119493103dup	PRECISE		MANUAL_OK	5to3	-	22724548	NA	0	263	10	362
P-0025754-T03-IM6	SOMATIC	ATR	ATR	3	3	119493103	142217651	IGR: 6Kb before NR1I2(+)	Intron of ATR(-):35bp before exon 32	GRCh37	DUPLICATION	ATR (NM_001184) rearrangement: c.5381-35:ATR_chr3:g.119493103dup	PRECISE		MANUAL_OK	5to3	-	22724548	NA	0	157	10	183
P-0030163-T01-IM6	SOMATIC	IGF1	IGF1	12	12	100249131	102872330	Intron of ANKS1B(-):30Kb before exon 2	Intron of IGF1(-):2Kb after exon 1	GRCh37	INVERSION	IGF1 (NM_001111285) Rearrangement : c.135-29964:ANKS1B_c.63+1767:IGF1inv	IMPPRECISE		MANUAL_OK	3to3	-	2623199	NA	0	58	0	58
P-0030163-T02-IM6	SOMATIC	TP53	TP53	17	17	7579860	41355823	Exon 2 of TP53(-)	Intron of NBR1(+):20bp after exon 20	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.53:TP53_chr17:g.41355823del	PRECISE		MANUAL_OK	3to5	-	33775963	NA	0	23	10	28
P-0032332-T01-IM6	SOMATIC	DOT1L	DOT1L	19	19	2026617	2216311	IGR: 11Kb before MKNK2(-)	Exon 20 of DOT1L(+)	GRCh37	DELETION	DOT1L (NM_032482) Rearrangement: c.1955:DOT1L_chr19:g.2026617	PRECISE		MANUAL_OK	3to5	-	189694	NA	0	5	5	5
P-0032991-T01-IM6	SOMATIC	CDKN2A	CDKN2A	9	9	21675509	21974870	IGR: 127Kb before MTAP(+)	Intron of CDKN2A(-):4Kb before exon 2	GRCh37	INVERSION	CDKN2A (NM_000077) Rearrangement:  chr9:g.21675509_c.-44inv	PRECISE		MANUAL_OK	3to3	-	299361	NA	0	11	10	11
P-0033492-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63852117	63926333	Exon 10 of ARID5B(+)	IGR: 27Kb before RTKN2(-)	GRCh37	DUPLICATION	ARID5B (NM_032199) rearrangement: c.2895:ARID5B_chr10:g.63926333dup	PRECISE		MANUAL_OK	5to3	-	74216	60	0	39	10	42
P-0033492-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15276243	15279315	Exon 31 of NOTCH3(-)	Intron of NOTCH3(-):1Kb before exon 29	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.5200-1093_c.5751del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3072	58	0	19	10	21
P-0033492-T02-IM7	SOMATIC	PLK2	PLK2	5	5	57364816	57753183	IGR: 39Kb before LOC101928569(-)	Exon 7 of PLK2(-)	GRCh37	DUPLICATION	PLK2 (NM_006622) rearrangement: c.833:PLK2_chr5:g.57364816dup	PRECISE		MANUAL_OK	5to3	-	388367	32	0	28	10	31
P-0033492-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47030652	47399014	Exon 4 of RBM10(+)	IGR: 21Kb before ARAF(+)	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.622:RBM10_chrX:g.47399014del	PRECISE		MANUAL_OK	3to5	-	368362	38	0	13	10	21
P-0043098-T03-IM7	SOMATIC	NF1	NF1	17	17	29700932	29704807	Intron of NF1(+):98bp before exon 57	Promoter of NF1(+):283Kb from tx start	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.8378-99:NF1_chr17:g.29704807dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	3875	60	0	30	10	31
P-0043098-T03-IM7	SOMATIC	BRCA1	BRCA1	17	17	41255702	41265904	Intron of BRCA1(-):436bp after exon 6	Intron of BRCA1(-):2Kb after exon 3	GRCh37	DUPLICATION	BRCA1 (NM_007294) rearrangement: c.134+1839_c.441+437dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	10202	60	0	12	10	12
P-0043098-T03-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15270351	15272184	Promoter of NOTCH3(-):92bp from tx start	Exon 33 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.6255:NOTCH3_chr19:g.15270351del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1833	60	0	43	10	44
P-0043419-T02-IM7	SOMATIC	RNF43	ERN1	17	17	56438017	62171988	Intron of RNF43(-):126bp after exon 7	Intron of ERN1(-):3Kb after exon 2	GRCh37	DUPLICATION	RNF43 (NM_017763) - ERN1 (NM_001433) rearrangement: c.849+127:RNF43_c.175+3493:ERN1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RNF43:ERN1}	5733971	60	0	74	10	77
P-0045302-T03-IM6	SOMATIC	MYC	MYC	8	8	128748859	128750220	Exon 1 of MYC(+)	Intron of MYC(+):273bp before exon 2	GRCh37	DELETION	MYC (NM_002467) rearrangement: c.20_c.31-274del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1361	NA	0	10	10	10
P-0047553-T01-IM6	SOMATIC	AGO2	AGO2	8	8	141564299	141566119	Intron of AGO2(-):2Kb after exon 10	Intron of AGO2(-):2bp before exon 10	GRCh37	DUPLICATION	AGO2 (NM_012154) rearrangement: c.1147-2_c.1269+1696dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	1820	NA	0	48	10	50
P-0048544-T01-IM6	SOMATIC	EGFR	EGFR	7	7	55081300	55218892	IGR: 5Kb before EGFR(+)	Intron of EGFR(+):94bp before exon 5	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.560-95:EGFR_chr7:g.55081300del	PRECISE		MANUAL_OK	3to5	-	137592	NA	0	11	10	12
P-0048704-T02-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	138997555	139391640	IGR: 9Kb before C9orf69(-)	Exon 34 of NOTCH1(-)	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.6551:NOTCH1_chr9:g.138997555del	PRECISE		MANUAL_OK	3to5	-	394085	60	0	9	8	9
P-0050403-T03-IM7	SOMATIC	KRT20	ERBB2	17	17	37866770	39034373	Intron of ERBB2(+):36bp after exon 7	Intron of KRT20(-):23bp after exon 6	GRCh37	INVERSION	KRT20 (NM_019010) - ERBB2 (NM_004448) fusion: c.1139+24:KRT20_c.901+36:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KRT20:ERBB2}	1167603	60	0	306	10	522
P-0050403-T03-IM7	SOMATIC	ERBB2	ERBB2	17	17	37883881	37897542	Intron of ERBB2(+):60bp before exon 27	Intron of GRB7(+):962bp before exon 2	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3413-61:ERBB2_chr17:g.37897542del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ERBB2:GRB7}	13661	60	0	255	10	864
P-0050403-T03-IM7	SOMATIC	RARA	KRT36	17	17	38508023	39643906	Intron of RARA(+):138bp before exon 5	Exon 4 of KRT36(-)	GRCh37	INVERSION	RARA (NM_000964) - KRT36 (NM_003771) rearrangement: c.470-139:RARA_c.783:KRT36inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RARA:KRT36}	1135883	60	0	2	10	2
P-0053822-T01-IM6	SOMATIC	FGFR2	BICC1	10	10	60459902	123243033	Intron of BICC1(+):2Kb before exon 3	Intron of FGFR2(-):178bp after exon 17	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2301+179:FGFR2_c.238-1932:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62783131	NA	0	82	10	90
P-0053977-T01-IM6	SOMATIC	BABAM1	BABAM1	19	19	17387791	17389913	Intron of BABAM1(+):73bp after exon 8	3-UTR of BABAM1(+):10Kb after coding stop	GRCh37	DELETION	BABAM1 (NM_001033549) rearrangement: c.786+73:BABAM1_chr19:g.17389913del	PRECISE		MANUAL_OK	3to5	-	2122	NA	0	27	10	28
P-0054557-T03-IM7	SOMATIC	PIK3R3	PIK3R3	20	1	22737930	46543264	IGR: 170Kb before LINC01384(-)	Exon 3 of PIK3R3(-)	GRCh37	TRANSLOCATION	PIK3R3 (NM_003629) rearrangement: t(1;20)(p34.1;p11.21)(chr1:g.46543264::chr20:g.22737930)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	40	10	48
P-0054719-T05-IM7	SOMATIC	ARID1A	ARID1A	8	1	130739200	27102277	IGR: 21Kb before GSDMC(-)	Intron of ARID1A(+):79bp after exon 19	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;8)(p36.11;q24.21)(chr1:g.27102277::chr8:g.130739200)	PRECISE		MANUAL_OK	3to3	-	0	60	0	83	10	83
P-0054719-T05-IM7	SOMATIC	BCOR	BCOR	X	X	39913043	39914467	Intron of BCOR(-):95bp after exon 14	Intron of BCOR(-):153bp after exon 12	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.4741+154_c.4976+96del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1424	60	0	46	10	46
P-0055318-T03-IM7	SOMATIC	PIK3CB	PIK3CB	16	3	49519913	138376494	IGR: 5Kb before ZNF423(-)	Intron of PIK3CB(-):37bp after exon 20	GRCh37	TRANSLOCATION	PIK3CB (NM_006219) rearrangement: t(3;16)(q22.3;q12.1)(chr3:g.138376494::chr16:g.49519913)	PRECISE		MANUAL_OK	5to5	-	0	60	0	15	10	17
P-0056846-T01-IM6	SOMATIC	FGFR3	TACC3	4	4	1741003	1808698	Intron of TACC3(+):425bp before exon 11	Intron of FGFR3(+):37bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+37:FGFR3_c.1942-426:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67695	NA	0	71	10	77
P-0059527-T03-IM7	SOMATIC	STK11	STK11	19	19	1207851	1221198	Intron of STK11(+):649bp after exon 1	Intron of STK11(+):13bp before exon 6	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.290+649_c.735-14del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : in frame	13347	60	0	55	10	56
P-0060306-T02-IM7	SOMATIC	ERF	LIPE	19	19	42756413	42917823	Intron of ERF(-):2Kb before exon 2	Intron of LIPE(-):3Kb before exon 2	GRCh37	DUPLICATION	ERF (NM_006494) - LIPE (NM_005357) rearrangement: c.23-1696:ERF_c.884-2829:LIPEdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ERF:LIPE}	161410	41	0	17	10	20
P-0060509-T03-IM7	SOMATIC	KLF5	KLF5	21	13	22905774	73636663	Intron of NCAM2(+):1Kb before exon 17	Exon 2 of KLF5(+)	GRCh37	TRANSLOCATION	KLF5 (NM_001730) rearrangement: t(13;21)(q22.1;q21.1)(chr13:g.73636663::chr21:g.22905774)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	9	8	9
P-0060885-T01-IM7	SOMATIC	NF1	NF1	X	17	37699590	29556887	3-UTR of DYNLT3(-):237bp after coding stop	Exon 22 of NF1(+)	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;X)(q11.2;p11.4)(chr17:g.29556887::chrX:g.37699590)	PRECISE		MANUAL_OK	5to5	-	0	NA	0	22	10	32
P-0062186-T01-IM7	SOMATIC	BAP1	BAP1	3	3	50363913	52440803	Intron of TUSC2(-):5bp before exon 2	Intron of BAP1(-):41bp after exon 8	GRCh37	INVERSION	BAP1 (NM_004656) rearrangement: c.659+42:BAP1_chr3:g.50363913inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2076890	60	0	75	10	97
P-0062198-T01-IM7	SOMATIC	TP53	KAT7	17	17	7576609	47870906	Intron of TP53(-):243bp after exon 9	Intron of KAT7(+):2Kb after exon 2	GRCh37	INVERSION	TP53 (NM_000546) - KAT7 (NM_007067) rearrangement: c.993+244:TP53_c.163+1511:KAT7inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TP53:KAT7}	40294297	NA	0	17	0	24
P-0062198-T01-IM7	SOMATIC	ASXL1	ASXL1	20	20	1151827	31019214	IGR: 9Kb before TMEM74B(-)	Exon 8 of ASXL1(+)	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.809:ASXL1_chr20:g.1151827inv	PRECISE		MANUAL_OK	5to5	-	29867387	NA	0	25	10	32
P-0062685-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68835350	68850243	Intron of CDH1(+):222bp before exon 3	Intron of CDH1(+):581bp after exon 10	GRCh37	DUPLICATION	CDH1 (NM_004360) rearrangement: c.164-223_c.1565+581dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : out of frame	14893	51	0	60	10	83
P-0062687-T01-IM7	SOMATIC	RB1	RB1	13	13	48927517	48937061	Intron of RB1(+):4Kb after exon 6	Exon 8 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.607+4358_c.829del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9544	60	0	23	0	169
P-0062849-T01-IM7	SOMATIC	INSR	INSR	19	19	7164984	7184338	Intron of INSR(-):1Kb after exon 8	Exon 3 of INSR(-)	GRCh37	DELETION	INSR (NM_000208) rearrangement: c.963_c.1861+1181del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19354	47	0	18	10	20
P-0062849-T01-IM7	SOMATIC	MAP2K2	MAP2K2	21	19	10588354	4094524	IGR: 318Kb before TPTE(-)	Intron of MAP2K2(-):28bp before exon 10	GRCh37	TRANSLOCATION	MAP2K2 (NM_030662) rearrangement: t(19;21)(p13.3;p11.2)(chr19:g.4094524::chr21:g.10588354)	PRECISE		MANUAL_OK	5to5	-	0	52	0	10	10	12
P-0063205-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	68999932	78867425	IGR: 94Kb before CASC17(-)	Intron of RPTOR(+):81bp before exon 20	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.2243-82:RPTOR_chr17:g.68999932del	PRECISE		MANUAL_OK	3to5	-	9867493	60	0	43	10	43
P-0063676-T03-IM7	SOMATIC	PAK7	PAK7	20	8	9624939	76648702	Exon 3 of PAK7(-)	IGR: 196Kb before HNF4G(+)	GRCh37	TRANSLOCATION	PAK7 (NM_177990) rearrangement: t(8;20)(q21.11;p12.2)(chr8:g.76648702::chr20:g.9624939)	PRECISE		MANUAL_OK	5to5	-	0	60	0	44	10	51
P-0064206-T01-IM7	SOMATIC	NF1	NF1	17	17	29527314	29533184	Intron of NF1(+):125bp before exon 9	Intron of NF1(+):73bp before exon 12	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.889-126_c.1261-74dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	5870	60	0	3	6	3
P-0064599-T02-IM7	SOMATIC	TTC28	MAP2K1	22	15	28706222	66779568	Intron of TTC28(-):4Kb before exon 3	Exon 8 of MAP2K1(+)	GRCh37	TRANSLOCATION	TTC28 (NM_001145418) - MAP2K1 (NM_002755) rearrangement: t(15;22)(q22.31;q12.1)(chr15:g.66779568::chr22:g.28706222)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TTC28:MAP2K1}	0	60	0	18	10	20
P-0064684-T01-IM7	SOMATIC	CAMK2A	CD74	5	5	149654050	149784826	Intron of CAMK2A(-):1Kb before exon 2	Intron of CD74(-):83bp before exon 5	GRCh37	DUPLICATION	CAMK2A (NM_015981) - CD74 (NM_001025159) rearrangement: c.63-1328:CAMK2A_c.442-83:CD74dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {CAMK2A:CD74}	130776	60	0	37	10	38
P-0064685-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	20770761	22008152	Intron of FOCAD(+):524bp after exon 10	Intron of CDKN2B(-):644bp after exon 1	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.156+645:CDKN2B_chr9:g.20770761del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1237391	60	0	16	10	16
P-0064697-T01-IM7	SOMATIC	TMPRSS2	ARRB1	21	11	42877301	75013239	Intron of TMPRSS2(-):3Kb after exon 1	Intron of ARRB1(-):12Kb before exon 2	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ARRB1 (NM_004041) rearrangement: t(11;21)(q13.4;q22.3)(chr11:g.75013239::chr21:g.42877301)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS2:ARRB1}	0	60	0	11	10	11
P-0064764-T01-IM7	SOMATIC	BRAF	SND1	7	7	127357391	140493289	Intron of SND1(+):4Kb before exon 10	Intron of BRAF(-):818bp after exon 8	GRCh37	INVERSION	BRAF (NM_004333) - SND1 (NM_014390) fusion: c.1140+819:BRAF_c.1039-3950:SND1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BRAF:SND1}	13135898	60	0	13	10	13
P-0064764-T01-IM7	SOMATIC	RGS3	BRAF	9	7	116291333	140493282	Intron of RGS3(+):167bp before exon 16	Intron of BRAF(-):825bp after exon 8	GRCh37	TRANSLOCATION	RGS3 (NM_144488) - BRAF (NM_004333) fusion: t(7;9)(q34;q32)(chr7:g.140493282::chr9:g.116291333)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {RGS3:BRAF}	0	60	0	38	10	38
P-0064778-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68861155	68863895	Intron of CDH1(+):921bp before exon 14	Intron of CDH1(+):195bp after exon 15	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.2165-922_c.2439+195inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2740	60	0	8	9	11
P-0064779-T01-IM7	SOMATIC	ATM	ATM	17	11	30013879	108141922	IGR: 111Kb before MIR365B(+)	Intron of ATM(+):49bp after exon 19	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(11;17)(q22.3;q11.2)(chr11:g.108141922::chr17:g.30013879)	PRECISE		MANUAL_OK	5to5	-	0	60	0	68	10	73
P-0064779-T01-IM7	SOMATIC	STAT5B	STAT5B	17	17	40359706	57380091	Exon 16 of STAT5B(-)	IGR: 29Kb before YPEL2(+)	GRCh37	INVERSION	STAT5B (NM_012448) rearrangement: c.1947:STAT5B_chr17:g.57380091inv	PRECISE		MANUAL_OK	3to3	-	17020385	60	0	64	10	63
P-0064779-T01-IM7	SOMATIC	WDR7	FOXO1	18	13	54475420	41133880	Intron of WDR7(+):8Kb before exon 19	Exon 2 of FOXO1(-)	GRCh37	TRANSLOCATION	WDR7 (NM_015285) - FOXO1 (NM_002015) rearrangement: t(13;18)(q14.11;q21.31)(chr13:g.41133880::chr18:g.54475420)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {WDR7:FOXO1}	0	60	0	31	10	30
P-0064779-T01-IM7	SOMATIC	KDM6A	KDM6A	X	9	44950178	36033701	Intron of KDM6A(+):69bp after exon 26	IGR: 3Kb before RECK(+)	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(9;X)(p13.3;p11.3)(chr9:g.36033701::chrX:g.44950178)	PRECISE		MANUAL_OK	3to5	-	0	60	0	27	10	27
P-0064785-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	12035522	12044653	Intron of MAP2K4(+):3Kb after exon 9	3-UTR of MAP2K4(+):120Kb after coding stop	GRCh37	INVERSION	MAP2K4 (NM_003010) rearrangement: c.1040+2918:MAP2K4_chr17:g.12044653inv	PRECISE		MANUAL_OK	3to3	-	9131	60	1	19	10	18
P-0064818-T01-IM7	SOMATIC	ROS1	ROS1	6	6	117707132	117726342	Intron of ROS1(-):108bp before exon 15	Intron of ROS1(-):751bp before exon 5	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.290-751_c.2126-108inv	PRECISE		MANUAL_OK	3to3	-	19210	60	0	18	10	18
P-0064821-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120468290	120484474	Exon 25 of NOTCH2(-)	Intron of NOTCH2(-):97bp before exon 18	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.2753-97_c.4149inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	16184	60	0	27	10	36
P-0064849-T01-IM7	SOMATIC	BRCA2	BRCA2	13	4	32929036	23440583	Exon 14 of BRCA2(+)	3-UTR of MIR548AJ2(-):24Kb after coding stop	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(4;13)(p15.2;q13.1)(chr4:g.23440583::chr13:g.32929036)	PRECISE		MANUAL_OK	3to3	-	0	60	0	21	10	21
P-0064851-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27098384	27100809	Intron of ARID1A(+):567bp after exon 12	Intron of ARID1A(+):10bp before exon 18	GRCh37	DUPLICATION	ARID1A (NM_006015) rearrangement: c.3406+567_c.4102-11dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	2425	44	0	6	10	6
P-0064852-T01-IM7	SOMATIC	B2M	B2M	15	15	45007900	45009803	Intron of B2M(+):1bp after exon 2	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346+1:B2M_chr15:g.45009803del	IMPPRECISE		MANUAL_OK	3to5	-	1903	60	0	10	0	10
P-0064852-T01-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	185173318	185190846	Intron of MAP3K13(+):4Kb after exon 7	Exon 11 of MAP3K13(+)	GRCh37	INVERSION	MAP3K13 (NM_004721) rearrangement: c.1278+4135_c.1727inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	17528	39	0	30	10	33
P-0064852-T01-IM7	SOMATIC	TEK	TEK	9	9	26555898	27168601	IGR: 285Kb before CAAP1(-)	Exon 3 of TEK(+)	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.473:TEK_chr9:g.26555898del	PRECISE		MANUAL_OK	3to5	-	612703	60	0	4	7	4
P-0064853-T01-IM7	SOMATIC	CCDC6	RET	10	10	43609511	61629044	Intron of RET(+):388bp after exon 10	Intron of CCDC6(-):17Kb before exon 2	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.304-16584:CCDC6_c.1879+388:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CCDC6:RET}	18019533	60	0	17	10	22
P-0064855-T01-IM7	SOMATIC	FGFR2	MBIP	14	10	36787130	123240070	Intron of MBIP(-):1Kb before exon 2	Intron of FGFR2(-):535bp before exon 18	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) - MBIP (NM_016586) fusion: t(10;14)(q26.13;q13.3)(chr10:g.123240070::chr14:g.36787130)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR2:MBIP}	0	60	0	168	10	170
P-0064875-T01-IM7	SOMATIC	GATA1	GATA1	X	10	48649583	42808256	Exon 2 of GATA1(+)	IGR: 19Kb before LOC441666(-)	GRCh37	TRANSLOCATION	GATA1 (NM_002049) rearrangement: t(10;X)(q11.21;p11.23)(chr10:g.42808256::chrX:g.48649583)	PRECISE		MANUAL_OK	3to5	-	0	60	0	16	10	16
P-0064885-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	17	11924526	30030049	Intron of MAP2K4(+):208bp after exon 1	IGR: 128Kb before MIR365B(+)	GRCh37	DELETION	MAP2K4 (NM_003010) rearrangement: c.115+208:MAP2K4_chr17:g.30030049del	PRECISE		MANUAL_OK	3to5	-	18105523	60	0	161	10	177
P-0064901-T01-IM7	SOMATIC	DGKH	FH	13	1	42830159	241667338	5-UTR of DGKH(+):557bp before coding start	Intron of FH(-):3bp after exon 7	GRCh37	TRANSLOCATION	FH (NM_000143) rearrangement: t(1;13)(q43;q14.11)(chr1:g.241667338::chr13:g.42830159)	IMPPRECISE		MANUAL_OK	5to5	Transcript Fusion {FH:DGKH}	0	36	0	15	0	21
P-0064902-T01-IM7	SOMATIC	CARM1	CARM1	19	19	10976156	10982503	Intron of C19orf38(+):2Kb after exon 6	Exon 1 of CARM1(+)	GRCh37	INVERSION	CARM1 (NM_199141) rearrangement: c.125:CARM1_chr19:g.10976156inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	6347	42	0	17	0	17
P-0064921-T01-IM7	SOMATIC	TGFBR2	TGFBR2	3	3	30730048	194302232	Intron of TGFBR2(+):45bp after exon 6	Promoter of TMEM44-AS1(+):3Kb from tx start	GRCh37	INVERSION	TGFBR2 (NM_001024847) rearrangement: c.1599+45:TGFBR2_chr3:g.194302232inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	163572184	58	0	20	10	20
P-0064964-T01-IM7	SOMATIC	ETV6	NTRK3	15	12	88564682	12032310	Intron of NTRK3(-):11Kb after exon 14	Intron of ETV6(+):5Kb before exon 6	GRCh37	TRANSLOCATION	ETV6 (NM_001987) - NTRK3 (NM_001012338) fusion: t(12;15)(p13.2;q25.3)(chr12:g.12032310::chr15:g.88564682)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ETV6:NTRK3}	0	60	0	6	0	6
P-0064964-T01-IM7	SOMATIC	PTPRD	PTPRD	9	9	8486178	20356930	Exon 28 of PTPRD(-)	Intron of MLLT3(-):2Kb before exon 9	GRCh37	INVERSION	PTPRD (NM_002839) rearrangement: c.2639:PTPRD_chr9:g.20356930inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	11870752	60	0	17	10	19
P-0064966-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178096702	178106214	Exon 5 of NFE2L2(-)	Intron of NFE2L2(-):7Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-7215_c.629del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9512	60	0	4	7	4
P-0064967-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71037049	71095944	Intron of FOXP1(-):95bp after exon 10	Intron of FOXP1(-):148bp after exon 6	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.664+149_c.1146+96del	PRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	58895	60	0	17	10	17
P-0064974-T01-IM7	SOMATIC	PIK3R2	PIK3R2	19	14	18277130	81212808	Intron of PIK3R2(+):18bp after exon 12	Intron of CEP128(-):3Kb before exon 18	GRCh37	TRANSLOCATION	PIK3R2 (NM_005027) rearrangement: t(14;19)(q31.1;p13.11)(chr14:g.81212808::chr19:g.18277130)	PRECISE		MANUAL_OK	5to3	-	0	60	0	8	10	9
P-0064975-T01-IM7	SOMATIC	PITPNC1	PRKAR1A	17	17	65602905	66521791	Intron of PITPNC1(+):25Kb before exon 6	Intron of PRKAR1A(+):103bp before exon 7	GRCh37	DELETION	PITPNC1 (NM_012417) - PRKAR1A (NM_212471) rearrangement: c.367-25354:PITPNC1_c.550-104:PRKAR1Adel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PITPNC1:PRKAR1A}	918886	60	0	6	0	6
P-0064987-T01-IM7	SOMATIC	PTPRS	PTPRS	19	15	5255879	28038200	Intron of PTPRS(-):239bp after exon 9	Intron of OCA2(-):38Kb before exon 24	GRCh37	TRANSLOCATION	PTPRS (NM_002850) rearrangement: t(15;19)(q12;p13.3)(chr15:g.28038200::chr19:g.5255879)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	22	10	22
P-0064999-T01-IM7	SOMATIC	GLI1	GLI1	12	3	57860017	147896091	Intron of GLI1(+):5bp before exon 8	IGR: 520Kb before AGTR1(+)	GRCh37	TRANSLOCATION	GLI1 (NM_005269) rearrangement: t(3;12)(q24;q13.3)(chr3:g.147896091::chr12:g.57860017)	PRECISE		MANUAL_OK	5to3	-	0	60	0	11	10	12
P-0064999-T01-IM7	SOMATIC	ARID2	ARID2	12	4	46245048	46917866	Exon 15 of ARID2(+)	IGR: 3Kb before GABRA4(-)	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(4;12)(p12;q12)(chr4:g.46917866::chr12:g.46245048)	IMPPRECISE		MANUAL_OK	5to3	-	0	54	0	10	0	10
P-0064999-T01-IM7	SOMATIC	NCLN	ERF	19	19	3206337	42752695	Exon 12 of NCLN(+)	Exon 4 of ERF(-)	GRCh37	INVERSION	NCLN (NM_020170) - ERF (NM_006494) rearrangement: c.1413:NCLN_c.1569:ERFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NCLN:ERF}	39546358	54	0	6	0	8
P-0064999-T01-IM7	SOMATIC	RBMS3	FAT1	4	3	187510264	29619323	Exon 27 of FAT1(-)	Intron of RBMS3(+):9Kb before exon 4	GRCh37	TRANSLOCATION	RBMS3 (NM_001003793) - FAT1 (NM_005245) rearrangement: t(3;4)(p24.1;q35.2)(chr3:g.29619323::chr4:g.187510264)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RBMS3:FAT1}	0	60	0	8	0	12
P-0065006-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30411379	30682820	IGR: 46Kb before HLA-E(+)	Exon 2 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.133:MDC1_chr6:g.30411379inv	PRECISE		MANUAL_OK	5to5	-	271441	60	0	53	10	59
P-0065014-T01-IM7	SOMATIC	EWSR1	FLI1	22	11	29684574	128666909	Intron of EWSR1(+):20bp before exon 9	Intron of FLI1(+):8Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128666909::chr22:g.29684574)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	60	0	68	10	69
P-0065016-T01-IM7	SOMATIC	STK11	STK11	19	19	1218378	1221578	Intron of STK11(+):37bp before exon 2	Intron of STK11(+):239bp after exon 6	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.291-38_c.862+239inv	PRECISE		MANUAL_OK	5to5	-	3200	60	0	56	10	64
P-0065017-T01-IM7	SOMATIC	CREBBP	TRAP1	16	16	3757584	3786774	Intron of TRAP1(-):10Kb after exon 1	Exon 27 of CREBBP(-)	GRCh37	DELETION	CREBBP (NM_004380) - TRAP1 (NM_016292) rearrangement: c.4437:CREBBP_c.88+9838:TRAP1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CREBBP:TRAP1}	29190	60	0	68	10	72
P-0065020-T01-IM7	SOMATIC	EWSR1	CREB3L1	22	11	29686629	46333903	Intron of EWSR1(+):924bp before exon 10	Exon 6 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333903::chr22:g.29686629)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	60	0	66	10	69
P-0065039-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47042242	47139515	Intron of NBEAL2(+):248bp before exon 28	Exon 9 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.5072:SETD2_chr3:g.47042242del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	97273	60	0	29	10	29
P-0065039-T01-IM7	SOMATIC	PDGFRA	PDGFRA	4	2	55144652	213940984	Exon 15 of PDGFRA(+)	Intron of IKZF2(-):19Kb before exon 4	GRCh37	TRANSLOCATION	PDGFRA (NM_006206) rearrangement: t(2;4)(q34;q12)(chr2:g.213940984::chr4:g.55144652)	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	37	0	37
P-0065042-T01-IM7	SOMATIC	WWOX	PLCG2	16	16	78505427	81946111	Intron of WWOX(+):39Kb after exon 8	Intron of PLCG2(+):90bp before exon 19	GRCh37	DELETION	WWOX (NM_016373) - PLCG2 (NM_002661) rearrangement: c.1056+38778:WWOX_c.1935-91:PLCG2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {WWOX:PLCG2}	3440684	60	0	63	10	64
P-0065044-T01-IM7	SOMATIC	RARRES3	CBL	11	11	63311897	119170113	Intron of RARRES3(+):195bp before exon 3	Intron of CBL(+):91bp before exon 16	GRCh37	DELETION	RARRES3 (NM_004585) - CBL (NM_005188) rearrangement: c.119-196:RARRES3_c.2435-92:CBLdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {RARRES3:CBL}	55858216	47	0	13	10	14
P-0065045-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	16132577	18656259	Intron of DERA(+):3Kb before exon 6	Exon 22 of PIK3C2G(+)	GRCh37	INVERSION	PIK3C2G (NM_004570) rearrangement: c.2938:PIK3C2G_chr12:g.16132577inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	2523682	60	0	35	0	35
P-0008574-T04-IM7	SOMATIC	RB1	RB1	13	13	48898880	49047476	Intron of RB1(+):17Kb after exon 2	Intron of RB1(+):19bp before exon 24	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.264+17338_c.2490-20dup	PRECISE		MANUAL_OK	5to3	Duplication of 21 exons : out of frame	148596	60	0	21	10	21
P-0036677-T02-IM7	SOMATIC	KDM6A	KDM6A	X	8	44941938	124293775	Intron of KDM6A(+):21bp before exon 22	IGR: 33Kb before ZHX1(-)	GRCh37	TRANSLOCATION	KDM6A (NM_021140) rearrangement: t(8;X)(q24.13;p11.3)(chr8:g.124293775::chrX:g.44941938)	PRECISE		MANUAL_OK	3to3	-	0	60	0	110	10	111
P-0056146-T04-IM7	SOMATIC	EPAS1	EPAS1	2	2	46588263	56092508	Intron of EPAS1(+):34bp after exon 6	Promoter of EFEMP1(-):588bp from tx start	GRCh37	INVERSION	EPAS1 (NM_001430) rearrangement: c.779+34:EPAS1_chr2:g.56092508inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EPAS1:EFEMP1}	9504245	60	0	9	10	9
P-0064899-T01-IM7	SOMATIC	NCOR1	NCOR1	17	15	15964824	46987627	Exon 37 of NCOR1(-)	IGR: 489Kb before SEMA6D(+)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(15;17)(q21.1;p12)(chr15:g.46987627::chr17:g.15964824)	PRECISE		MANUAL_OK	5to5	-	0	60	0	30	10	30
P-0065060-T01-IM7	SOMATIC	POLE	POLE	12	12	133202445	133209895	Intron of POLE(-):89bp before exon 47	Intron of POLE(-):514bp before exon 44	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.6005-514_c.6532-89del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	7450	59	0	19	10	22
P-0065061-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55187489	55223279	Intron of EGFR(+):22Kb before exon 2	Intron of EGFR(+):243bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-22490_c.890-244del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	35790	60	0	92	0	696
P-0065147-T01-IM7	SOMATIC	KEAP1	KEAP1	19	19	10600131	10604369	Intron of KEAP1(-):87bp before exon 5	Intron of KEAP1(-):1Kb before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-1431_c.1532-87del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	4238	41	0	54	10	58
P-0065148-T01-IM7	SOMATIC	TP53	TP53	17	17	7578122	7579767	Intron of TP53(-):54bp after exon 6	Intron of TP53(-):46bp before exon 3	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.75-46_c.672+55del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 4 exons : out of frame	1645	60	0	5	0	5
P-0065149-T01-IM7	SOMATIC	TMPRSS2	ETV1	21	7	42872304	14018849	Intron of TMPRSS2(-):2Kb before exon 2	Intron of ETV1(-):2Kb before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ETV1 (NM_001163147) fusion: t(7;21)(p21.2;q22.3)(chr7:g.14018849::chr21:g.42872304)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TMPRSS2:ETV1}	0	60	0	12	10	11
P-0000268-T02-IM7	SOMATIC	EPHB1	EPHB1	15	3	59725885	134873354	IGR: 4Kb before FAM81A(+)	Intron of EPHB1(+):236bp after exon 6	GRCh37	TRANSLOCATION	EPHB1 (NM_004441) rearrangement: t(3;15)(q22.2;q22.2)(chr3:g.134873354::chr15:g.59725885)	PRECISE		MANUAL_OK	5to3	-	0	60	0	24	10	24
P-0000268-T02-IM7	SOMATIC	ATR	ATR	20	3	57466752	142260471	5-UTR of GNAS(+):29bp before coding start	Intron of ATR(-):595bp before exon 18	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;20)(q23;q13.32)(chr3:g.142260471::chr20:g.57466752)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {ATR:GNAS}	0	60	0	18	10	20
P-0000268-T02-IM7	SOMATIC	PPARG	PPARG	3	3	12475337	12476574	Intron of PPARG(+):59bp before exon 7	Promoter of PPARG(+):84Kb from tx start	GRCh37	DELETION	PPARG (NM_015869) rearrangement: c.1271-60:PPARG_chr3:g.12476574del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1237	60	0	4	9	4
P-0000268-T02-IM7	SOMATIC	ATRX	ATRX	X	X	12785249	76907627	IGR: 24Kb before PRPS2(+)	Exon 15 of ATRX(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.4534:ATRX_chrX:g.12785249del	PRECISE		MANUAL_OK	3to5	-	64122378	60	0	88	10	90
P-0030133-T03-IM7	SOMATIC	NF2	CECR2	22	22	17972530	30069244	Intron of CECR2(+):4Kb before exon 2	Intron of NF2(+):13bp before exon 12	GRCh37	DUPLICATION	NF2 (NM_000268) - CECR2 (NM_031413) rearrangement: c.1123-14:NF2_c.96-3905:CECR2dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NF2:CECR2}	12096714	60	0	5	0	5
P-0030133-T03-IM7	SOMATIC	NF2	NF2	22	22	20029100	30069241	Intron of TANGO2(+):2Kb before exon 3	Intron of NF2(+):16bp before exon 12	GRCh37	DUPLICATION	NF2 (NM_000268) rearrangement: c.1123-17:NF2_chr22:g.20029100dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NF2:TANGO2}	10040141	20	0	3	10	8
P-0044010-T03-IM7	SOMATIC	RRAS2	RRAS2	11	11	14300978	45787087	Intron of RRAS2(-):8bp before exon 6	IGR: 6Kb before DKFZp779M0652(+)	GRCh37	INVERSION	RRAS2 (NM_012250) rearrangement: c.528-8:RRAS2_chr11:g.45787087inv	PRECISE		MANUAL_OK	3to3	-	31486109	29	0	31	10	65
P-0050545-T06-IM7	SOMATIC	IRS1	IRS1	2	2	227600667	227659849	3-UTR of IRS1(-):59Kb after coding stop	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) rearrangement: c.3606:IRS1_chr2:g.227600667inv	IMPPRECISE		MANUAL_OK	3to3	-	59182	60	0	56	0	56
P-0050545-T06-IM7	SOMATIC	KIT	KIT	4	3	55597955	182399422	Intron of KIT(+):81bp before exon 16	IGR: 112Kb before ATP11B(+)	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(3;4)(q26.33;q12)(chr3:g.182399422::chr4:g.55597955)	IMPPRECISE		MANUAL_OK	5to3	-	0	60	0	5	0	5
P-0055220-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42872980	43515020	Intron of TMPRSS2(-):3Kb before exon 2	Intron of UMODL1(+):4Kb before exon 7	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2864:TMPRSS2_chr21:g.43515020del	PRECISE		MANUAL_OK	3to5	-	642040	60	0	16	10	16
P-0059442-T05-IM7	SOMATIC	MAP3K14	MAP3K14	18	17	65595072	43344127	IGR: 411Kb before LOC643542(+)	Intron of MAP3K14(-):79bp before exon 14	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;18)(q21.31;q22.1)(chr17:g.43344127::chr18:g.65595072)	PRECISE		MANUAL_OK	5to3	-	0	60	0	491	10	556
P-0063638-T01-IM7	SOMATIC	TFE3	SFPQ	X	1	48895662	35652973	Intron of TFE3(-):23bp before exon 5	Intron of SFPQ(-):121bp before exon 8	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - SFPQ (NM_005066) rearrangement: t(1;X)(p34.3;p11.23)(chr1:g.35652973::chrX:g.48895662)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TFE3:SFPQ}	0	60	0	60	10	60
P-0064517-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968224	21984051	3-UTR of CDKN2A(-):6Kb after coding stop	Intron of CDKN2A(-):10Kb after exon 1	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.193+10087:CDKN2A_chr9:g.21968224del	PRECISE		MANUAL_OK	3to5	-	15827	60	0	6	8	6
P-0064775-T01-IM7	SOMATIC	AKT2	AKT2	19	1	40742009	38944548	Exon 11 of AKT2(-)	IGR: 270Kb before LINC01343(-)	GRCh37	TRANSLOCATION	AKT2 (NM_001626) rearrangement: t(1;19)(p34.3;q13.2)(chr1:g.38944548::chr19:g.40742009)	PRECISE		MANUAL_OK	3to3	-	0	60	0	33	10	33
P-0064872-T01-IM7	SOMATIC	LCN8	PPP6C	9	9	127920645	139651190	Exon 4 of PPP6C(-)	Intron of LCN8(-):146bp before exon 3	GRCh37	DELETION	LCN8 (NM_178469) - PPP6C (NM_002721) rearrangement: c.156-146:LCN8_c.254:PPP6Cdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LCN8:PPP6C}	11730545	60	0	36	10	37
P-0064872-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138574741	140489277	Intron of KIAA1549(-):4Kb after exon 10	Intron of BRAF(-):2Kb before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4032+4347:KIAA1549_c.1141-1893:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1914536	60	0	47	10	47
P-0064872-T01-IM7	SOMATIC	MAPKAP1	MAPKAP1	16	9	35130908	128432139	IGR: 150Kb before FLJ26245(+)	Exon 3 of MAPKAP1(-)	GRCh37	TRANSLOCATION	MAPKAP1 (NM_001006617) rearrangement: t(9;16)(q33.3;p11.1)(chr9:g.128432139::chr16:g.35130908)	PRECISE		MANUAL_OK	3to5	-	0	60	0	42	10	43
P-0064872-T01-IM7	SOMATIC	POLD1	TMEM87A	19	15	50909766	42511439	Exon 12 of POLD1(+)	Intron of TMEM87A(-):339bp after exon 16	GRCh37	TRANSLOCATION	POLD1 (NM_002691) - TMEM87A (NM_015497) rearrangement: t(15;19)(q15.1;q13.33)(chr15:g.42511439::chr19:g.50909766)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {POLD1:TMEM87A}	0	60	0	47	10	46
P-0064872-T01-IM7	SOMATIC	NOTCH1	NOTCH1	19	9	53905923	139399929	Intron of ZNF765(+):479bp after exon 3	Exon 25 of NOTCH1(-)	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(9;19)(q34.3;q13.42)(chr9:g.139399929::chr19:g.53905923)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	31	10	31
P-0064951-T01-IM7	SOMATIC	KIF5B	RET	10	10	32309948	43611130	Intron of KIF5B(-):1bp after exon 19	Intron of RET(+):901bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.2204+2:KIF5B_c.2137-902:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KIF5B:RET}	11301182	60	0	13	10	13
P-0064997-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46287219	46319894	Exon 19 of ARID2(+)	Intron of SCAF11(-):30bp after exon 11	GRCh37	DELETION	ARID2 (NM_152641) rearrangement: c.5164:ARID2_chr12:g.46319894del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	32675	60	0	28	10	29
P-0065009-T01-IM7	SOMATIC	SLFN11	SLFN11	17	17	33686046	33689600	Intron of SLFN11(-):1Kb after exon 4	Intron of SLFN11(-):157bp after exon 3	GRCh37	INVERSION	SLFN11 (NM_001104589) rearrangement: c.1069+158_c.1198+1216inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3554	60	0	4	9	4
P-0065010-T01-IM7	SOMATIC	JAK3	JAK3	19	19	17943594	17947718	Intron of JAK3(-):4bp after exon 18	Intron of JAK3(-):219bp after exon 13	GRCh37	DUPLICATION	JAK3 (NM_000215) rearrangement: c.1786+220_c.2490+5dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : out of frame	4124	60	0	52	10	53
P-0065010-T01-IM7	SOMATIC	BARD1	BARD1	2	2	215644812	215646053	Intron of BARD1(-):471bp after exon 4	Exon 4 of BARD1(-)	GRCh37	DUPLICATION	BARD1 (NM_000465) rearrangement: c.545_c.1314+472dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	1241	60	0	32	10	34
P-0065010-T01-IM7	SOMATIC	NOTCH2	NOTCH2	7	1	65236779	120529630	Promoter of LOC441242(-):636Kb from tx start	Exon 5 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;7)(p12;q11.21)(chr1:g.120529630::chr7:g.65236779)	PRECISE		MANUAL_OK	3to3	-	0	38	0	7	10	33
P-0065101-T01-IM7	SOMATIC	EIF4A2	EIF4A2	12	3	59612352	186506996	IGR: 346Kb before LRIG3(-)	Exon 11 of EIF4A2(+)	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(3;12)(q27.3;q14.1)(chr3:g.186506996::chr12:g.59612352)	PRECISE		MANUAL_OK	3to3	-	0	60	0	5	10	5
P-0065104-T01-IM7	SOMATIC	ROS1	CD74	6	5	117646386	149783694	Intron of ROS1(-):808bp before exon 34	Intron of CD74(-):548bp after exon 6	GRCh37	TRANSLOCATION	ROS1 (NM_002944) - CD74 (NM_001025159) rearrangement: t(5;6)(q32;q22.1)(chr5:g.149783694::chr6:g.117646386)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ROS1:CD74}	0	60	0	13	10	13
P-0065142-T01-IM7	SOMATIC	TOP1	TOP1	20	20	39708883	39713566	Intron of TOP1(+):63bp after exon 6	Intron of TOP1(+):358bp after exon 8	GRCh37	DELETION	TOP1 (NM_003286) rearrangement: c.431+63_c.614+358del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	4683	60	0	8	10	8
P-0065168-T01-IM7	SOMATIC	CTCF	CTCF	16	16	67644870	67648272	Exon 3 of CTCF(+)	Intron of CTCF(+):2Kb after exon 4	GRCh37	DELETION	CTCF (NM_006565) rearrangement: c.135_c.952+2248del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3402	60	0	19	10	20
P-0065195-T01-IM7	SOMATIC	TRAF2	TRAF2	9	9	139819227	139820309	Intron of TRAF2(+):775bp after exon 10	Exon 11 of TRAF2(+)	GRCh37	DELETION	TRAF2 (NM_021138) rearrangement: c.1287+775_c.1462del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1082	60	0	29	10	29
P-0065200-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55126794	55222529	Intron of EGFR(+):40Kb after exon 1	Intron of EGFR(+):684bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+39736_c.889+684del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	95735	60	0	92	0	409
P-0065201-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5207765	5218200	Intron of PTPRS(-):167bp after exon 37	Intron of PTPRS(-):230bp after exon 25	GRCh37	DUPLICATION	PTPRS (NM_002850) rearrangement: c.4048+231_c.5778+168dup	PRECISE		MANUAL_OK	5to3	Duplication of 12 exons : out of frame	10435	60	0	25	10	25
P-0065201-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157099147	157102641	Exon 1 of ARID1B(+)	Intron of ARID1B(+):2Kb after exon 1	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.84_c.1542+2036del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3494	60	0	13	10	13
P-0065202-T01-IM7	SOMATIC	CSF3R	CSF3R	1	1	25228443	36939408	3-UTR of RUNX3(-):169bp after coding stop	Exon 5 of CSF3R(-)	GRCh37	DELETION	CSF3R (NM_000760) rearrangement: c.442:CSF3R_chr1:g.25228443del	PRECISE		MANUAL_OK	3to5	-	11710965	60	0	7	10	7
P-0065210-T01-IM7	SOMATIC	EML4	ALK	2	2	29448076	42505978	Intron of ALK(-):250bp after exon 19	Intron of EML4(+):2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-2012:EML4_c.3172+251:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13057902	40	0	31	10	33
P-0065214-T01-IM7	SOMATIC	BTK	BTK	X	11	100630084	62660731	Intron of BTK(-):47bp after exon 2	IGR: 12Kb before SLC3A2(+)	GRCh37	TRANSLOCATION	BTK (NM_000061) rearrangement: t(11;X)(q12.3;q22.1)(chr11:g.62660731::chrX:g.100630084)	PRECISE		MANUAL_OK	5to5	-	0	60	0	65	10	68
P-0065216-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935376	42870322	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):206bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-206:TMPRSS2_c.39+12210:ERGdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2934946	60	0	9	0	10
P-0065232-T01-IM7	SOMATIC	BRAF	BRAF	12	7	53448644	140486490	Intron of TENC1(+):325bp before exon 8	Intron of BRAF(-):857bp after exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;12)(q34;q13.13)(chr7:g.140486490::chr12:g.53448644)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	59	0	93	10	97
P-0065234-T01-IM7	SOMATIC	NOTCH2	NOTCH2	7	1	64779053	120459217	3-UTR of LOC441242(-):457Kb after coding stop	Exon 34 of NOTCH2(-)	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;7)(p12;q11.21)(chr1:g.120459217::chr7:g.64779053)	PRECISE		MANUAL_OK	3to3	-	0	60	0	11	10	11
P-0065258-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39965808	42870376	3-UTR of ERG(-):68Kb after coding stop	Intron of TMPRSS2(-):260bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-260:TMPRSS2_chr21:g.39965808del	PRECISE		MANUAL_OK	3to5	-	2904568	60	0	53	10	59
P-0065261-T01-IM7	SOMATIC	ELF3	ELF3	10	1	102149853	201984410	Promoter of LINC00263(+):17Kb from tx start	Exon 9 of ELF3(+)	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;10)(q32.1;q24.31)(chr1:g.201984410::chr10:g.102149853)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LINC00263:ELF3}	0	60	0	6	10	6
P-0065261-T01-IM7	SOMATIC	NF1	NF1	17	17	29657890	74593267	Intron of NF1(+):374bp after exon 38	IGR: 28Kb before ST6GALNAC1(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5812+374:NF1_chr17:g.74593267del	IMPPRECISE		MANUAL_OK	3to5	-	44935377	60	0	8	0	8
P-0065262-T01-IM7	SOMATIC	BBC3	NOVA2	19	19	46466754	47726856	Intron of NOVA2(-):2Kb before exon 2	Intron of BBC3(-):2Kb before exon 4	GRCh37	DELETION	BBC3 (NM_001127240) - NOVA2 (NM_002516) rearrangement: c.569-1681:BBC3_c.86-2343:NOVA2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {BBC3:NOVA2}	1260102	60	0	2	4	2
P-0065310-T01-IM7	SOMATIC	FGFR3	FGFR3	4	4	1795019	1804714	Promoter of FGFR3(+):19bp from tx start	Intron of FGFR3(+):704bp before exon 8	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.931-705:FGFR3_chr4:g.1795019del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	9695	60	0	28	10	28
P-0065311-T01-IM7	SOMATIC	SOS1	SOS1	5	2	130282648	39249715	IGR: 212Kb before HINT1(-)	Exon 10 of SOS1(-)	GRCh37	TRANSLOCATION	SOS1 (NM_005633) rearrangement: t(2;5)(p22.1;q23.3)(chr2:g.39249715::chr5:g.130282648)	PRECISE		MANUAL_OK	5to3	-	0	60	0	5	10	5
P-0065314-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21847107	21974440	Intron of MTAP(+):8Kb before exon 6	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3233:CDKN2A_chr9:g.21847107del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	127333	30	0	5	10	12
P-0064408-T02-IM7	SOMATIC	E2F3	SOX4	6	6	20440198	21595237	Intron of E2F3(+):37Kb after exon 1	Exon 1 of SOX4(+)	GRCh37	DELETION	E2F3 (NM_001949) - SOX4 (NM_003107) rearrangement: c.393+37342:E2F3_c.472:SOX4del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {E2F3:SOX4}	1155039	60	0	14	10	14
P-0065110-T01-IM7	SOMATIC	SMAD3	SMAD3	15	15	67477152	67812594	Exon 7 of SMAD3(+)	3-UTR of IQCH-AS1(-):2Kb after coding stop	GRCh37	DELETION	SMAD3 (NM_005902) rearrangement: c.959:SMAD3_chr15:g.67812594del	PRECISE		MANUAL_OK	3to5	-	335442	60	0	108	10	118
P-0065110-T01-IM7	SOMATIC	AR	KIF26A	X	14	66766336	104767321	Exon 1 of AR(+)	IGR: 162Kb before KIF26A(+)	GRCh37	TRANSLOCATION	AR (NM_000044) rearrangement: t(14;X)(q32.33;q12)(chr14:g.104767321::chrX:g.66766336)	IMPPRECISE		MANUAL_OK	5to5	-	0	25	2	12	0	17
P-0065113-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89350608	89415579	Exon 9 of ANKRD11(-)	5-UTR of ANKRD11(-):81Kb before coding start	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.2342:ANKRD11_chr16:g.89415579del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	64971	28	0	11	10	14
P-0065114-T01-IM7	SOMATIC	TET2	TET2	4	1	106158335	170726672	Exon 3 of TET2(+)	IGR: 93Kb before PRRX1(+)	GRCh37	TRANSLOCATION	TET2 (NM_001127208) rearrangement: t(1;4)(q24.2;q24)(chr1:g.170726672::chr4:g.106158335)	PRECISE		MANUAL_OK	5to3	-	0	60	0	10	10	10
P-0065124-T01-IM7	SOMATIC	ENAM	NOTCH2	4	1	71506002	120509147	Intron of ENAM(+):2Kb before exon 9	Intron of NOTCH2(-):35bp before exon 9	GRCh37	TRANSLOCATION	ENAM (NM_031889) - NOTCH2 (NM_024408) rearrangement: t(1;4)(p12;q13.3)(chr1:g.120509147::chr4:g.71506002)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {ENAM:NOTCH2}	0	60	0	66	10	66
P-0065129-T01-IM7	SOMATIC	TERT	TERT	5	2	1295653	28100849	Promoter of TERT(-):42Kb from tx start	Intron of RBKS(-):12Kb after exon 1	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: (2;5)(p23.2;p15.33)(chr5:g.1295653::chr2:g.28100849)	PRECISE		MANUAL_OK	3to3	-	0	60	0	19	10	18
P-0065132-T01-IM7	SOMATIC	EPHA5	EPHA5	12	4	61177499	66280035	IGR: 925Kb before FAM19A2(-)	Exon 7 of EPHA5(-)	GRCh37	TRANSLOCATION	EPHA5 (NM_004439) rearrangement: t(4;12)(q13.1;q14.1)(chr4:g.66280035::chr12:g.61177499)	PRECISE		MANUAL_OK	3to5	-	0	60	0	8	10	8
P-0021868-T05-IM7	SOMATIC	EWSR1	WT1	22	11	29683712	32416591	Intron of EWSR1(+):589bp after exon 8	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416591::chr22:g.29683712)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	100	10	100
P-0023610-T04-IM7	SOMATIC	TP53	TP53	17	17	7577015	7578292	Intron of TP53(-):3bp after exon 8	Intron of TP53(-):3bp before exon 6	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.560-3_c.919+4dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : in frame	1277	60	0	182	10	197
P-0027054-T07-IM7	SOMATIC	FGFR3	TACC3	4	4	1740527	1808898	Intron of TACC3(+):901bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2330:FGFR3_c.1942-902:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68371	48	0	141	10	163
P-0044333-T03-IM7	SOMATIC	INSR	INSR	19	19	7036321	7117526	Promoter of MBD3L4(-):1Kb from tx start	Intron of INSR(-):105bp before exon 22	GRCh37	INVERSION	INSR (NM_000208) rearrangement: c.3795-105:INSR_chr19:g.7036321inv	PRECISE		MANUAL_OK	3to3	-	81205	26	0	8	10	17
P-0044333-T03-IM7	SOMATIC	EPHA7	EPHA7	6	6	94066589	94067858	Exon 5 of EPHA7(-)	Intron of EPHA7(-):115bp after exon 4	GRCh37	DELETION	EPHA7 (NM_004440) rearrangement: c.988+116_c.1170del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1269	60	0	11	10	11
P-0044333-T03-IM7	SOMATIC	NOTCH1	GNL3	9	3	139397753	52723317	Exon 27 of NOTCH1(-)	Intron of GNL3(+):95bp after exon 6	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - GNL3 (NM_014366) rearrangement: t(3;9)(p21.1;q34.3)(chr3:g.52723317::chr9:g.139397753)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH1:GNL3}	0	60	0	70	10	83
P-0044333-T03-IM7	SOMATIC	TRAF2	TRAF2	9	3	139802314	52993083	Intron of TRAF2(+):207bp before exon 5	Intron of SFMBT1(-):5Kb before exon 3	GRCh37	TRANSLOCATION	TRAF2 (NM_021138) rearrangement: t(3;9)(p21.1;q34.3)(chr3:g.52993083::chr9:g.139802314)	PRECISE		MANUAL_OK	5to3	-	0	53	0	15	10	15
P-0057071-T03-IM7	SOMATIC	TP53BP1	TP53BP1	15	10	43773282	45331236	Intron of TP53BP1(-):62bp before exon 5	3-UTR of TMEM72-AS1(-):124Kb after coding stop	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) rearrangement: t(10;15)(q11.21;q15.3)(chr10:g.45331236::chr15:g.43773282)	PRECISE		MANUAL_OK	3to3	-	0	60	0	76	10	76
P-0062001-T02-IM7	SOMATIC	SOS1	SOS1	2	2	39232979	39240655	Intron of SOS1(-):573bp after exon 17	Exon 13 of SOS1(-)	GRCh37	INVERSION	SOS1 (NM_005633) rearrangement: c.2113_c.2791+574inv	PRECISE		MANUAL_OK	3to3	-	7676	60	0	2	4	2
P-0063060-T02-IM7	SOMATIC	KIAA1324	TMPRSS2	21	1	42867232	109667031	Intron of TMPRSS2(-):727bp before exon 3	Intron of KIAA1324(+):10Kb after exon 1	GRCh37	TRANSLOCATION	KIAA1324 (NM_020775) - TMPRSS2 (NM_001135099) rearrangement: t(1;21)(p13.3;q22.3)(chr1:g.109667031::chr21:g.42867232)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {KIAA1324:TMPRSS2}	0	60	0	6	10	6
P-0063077-T02-IM7	SOMATIC	NF2	NF2	22	18	30051498	27974069	Intron of NF2(+):84bp before exon 6	IGR: 95Kb before MIR302F(+)	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(18;22)(q12.1;q12.2)(chr18:g.27974069::chr22:g.30051498)	PRECISE		MANUAL_OK	5to5	-	0	60	0	6	10	6
P-0064808-T01-IM7	SOMATIC	ELF3	ELF3	12	1	124884896	201982336	Intron of NCOR2(-):150bp after exon 17	Exon 7 of ELF3(+)	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;12)(q32.1;q24.31)(chr1:g.201982336::chr12:g.124884896)	PRECISE		MANUAL_OK	3to5	-	0	60	0	5	6	5
P-0064808-T01-IM7	SOMATIC	ERG	TMPRSS2	21	21	39877689	42872205	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	INVERSION	ERG (NM_004449) - TMPRSS2 (NM_001135099) rearrangement: c.40-60145:ERG_c.56-2089:TMPRSS2inv	PRECISE		MANUAL_OK	3to3	-	2994516	60	0	9	10	9
P-0065031-T02-IM7	SOMATIC	BRCA2	BRCA2	13	13	32912101	32929533	Exon 11 of BRCA2(+)	Intron of BRCA2(+):108bp after exon 14	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.3609_c.7435+108inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	17432	60	0	2	8	0
P-0065031-T02-IM7	SOMATIC	BRAF	BRAF	7	7	47615691	140513746	5-UTR of TNS3(-):298Kb before coding start	Intron of BRAF(-):5Kb before exon 4	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.505-4951:BRAF_chr7:g.47615691dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TNS3:BRAF}	92898055	57	0	2	6	2
P-0065242-T01-IM7	SOMATIC	NF1	NF1	17	17	29661721	57541520	Intron of NF1(+):134bp before exon 39	3-UTR of LINC01476(-):63Kb after coding stop	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5813-135:NF1_chr17:g.57541520del	PRECISE		MANUAL_OK	3to5	-	27879799	60	0	11	10	11
P-0065246-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39844276	42873470	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3354:TMPRSS2_c.18+26011:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3029194	60	0	41	10	41
P-0065247-T01-IM7	SOMATIC	PBRM1	TMEM135	11	3	86919607	52597185	Intron of TMEM135(+):28Kb before exon 5	Intron of PBRM1(-):194bp after exon 25	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) - TMEM135 (NM_022918) rearrangement: t(3;11)(p21.1;q14.2)(chr3:g.52597185::chr11:g.86919607)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PBRM1:TMEM135}	0	60	0	47	10	49
P-0065269-T01-IM7	SOMATIC	POLE	GALNT9	12	12	132896939	133254288	Intron of GALNT9(-):9Kb after exon 1	Exon 7 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) - GALNT9 (NM_001122636) rearrangement: c.596:POLE_c.238+8613:GALNT9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {POLE:GALNT9}	357349	60	0	7	10	7
P-0065269-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39806325	42872269	Intron of ERG(-):11Kb before exon 3	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-2153:TMPRSS2_c.237-10842:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3065944	60	0	7	10	7
P-0065287-T01-IM7	SOMATIC	MET	MET	7	7	116411726	116414832	Intron of MET(+):18bp after exon 13	Intron of MET(+):102bp before exon 15	GRCh37	DELETION	MET (NM_000245) rearrangement: c.2887+18_c.3029-103del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	3106	60	0	22	10	22
P-0065324-T01-IM7	SOMATIC	AKT1	AKT1	14	14	105246361	106813948	Intron of AKT1(-):63bp after exon 3	IGR: 70Kb before LINC00226(+)	GRCh37	INVERSION	AKT1 (NM_001014431) rearrangement: c.175+64:AKT1_chr14:g.106813948inv	IMPPRECISE		MANUAL_OK	5to5	-	1567587	30	0	5	0	7
P-0065326-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67589073	68081987	Intron of PIK3R1(+):46bp after exon 9	IGR: 308Kb before SLC30A5(+)	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1118+46:PIK3R1_chr5:g.68081987inv	PRECISE		MANUAL_OK	3to3	-	492914	60	0	19	10	19
P-0065328-T01-IM7	SOMATIC	PRKAR1A	PRKAR1A	20	17	10001824	66521799	Promoter of SNAP25-AS1(-):3Kb from tx start	Intron of PRKAR1A(+):95bp before exon 7	GRCh37	TRANSLOCATION	PRKAR1A (NM_212471) rearrangement: t(17;20)(q24.2;p12.2)(chr17:g.66521799::chr20:g.10001824)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {SNAP25-AS1:PRKAR1A}	0	60	0	6	10	6
P-0065330-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55197734	55223083	Intron of EGFR(+):12Kb before exon 2	Intron of EGFR(+):439bp before exon 8	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-12245_c.890-440del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	25349	60	0	428	10	459
P-0065396-T01-IM7	SOMATIC	NTRK1	NTRK1	1	1	156825788	156846356	Intron of NTRK1(+):8Kb before exon 3	Exon 14 of NTRK1(+)	GRCh37	DUPLICATION	NTRK1 (NM_002529) rearrangement: c.1797:NTRK1_chr1:g.156825788dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	20568	60	0	4	10	4
P-0065396-T01-IM7	SOMATIC	TSPAN16	CARM1	19	19	11032174	11433006	Intron of CARM1(+):55bp after exon 15	Intron of TSPAN16(+):4Kb before exon 7	GRCh37	DUPLICATION	TSPAN16 (NM_012466) - CARM1 (NM_199141) rearrangement: c.688-4464:TSPAN16_c.1684+55:CARM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TSPAN16:CARM1}	400832	60	0	11	10	11
P-0065396-T01-IM7	SOMATIC	MSH2	MSH2	2	2	47675225	47698317	Intron of MSH2(+):2Kb after exon 8	Intron of MSH2(+):116bp after exon 11	GRCh37	DUPLICATION	MSH2 (NM_000251) rearrangement: c.1386+2429_c.1759+116dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	23092	60	0	5	9	5
P-0065407-T01-IM7	SOMATIC	SUFU	SUFU	10	10	104268947	131857574	Exon 2 of SUFU(+)	IGR: 5Kb before LINC00959(-)	GRCh37	INVERSION	SUFU (NM_016169) rearrangement: c.204:SUFU_chr10:g.131857574inv	PRECISE		MANUAL_OK	5to5	-	27588627	60	0	2	6	2
P-0065407-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865598	42866632	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):127bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-127:TMPRSS2_c.18+4689:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3001034	60	0	32	10	33
P-0065425-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	89514847	114889339	Intron of ATAD1(-):283bp before exon 10	Intron of TCF7L2(+):12Kb before exon 6	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.553-11604:TCF7L2_chr10:g.89514847del	PRECISE		MANUAL_OK	3to5	-	25374492	60	0	7	10	7
P-0065425-T01-IM7	SOMATIC	PTCH1	PTCH1	9	9	98243076	98245245	Intron of PTCH1(-):206bp before exon 6	Intron of PTCH1(-):760bp before exon 4	GRCh37	DELETION	PTCH1 (NM_000264) rearrangement: c.585-760_c.747-206del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2169	60	0	3	3	3
P-0065426-T01-IM7	SOMATIC	STK11	STK11	19	19	1221143	1270413	Intron of STK11(+):68bp before exon 6	5-UTR of CIRBP(+):519bp before coding start	GRCh37	DUPLICATION	STK11 (NM_000455) rearrangement: c.735-69:STK11_chr19:g.1270413dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {CIRBP:STK11}	49270	60	0	11	10	11
P-0065465-T01-IM7	SOMATIC	MET	MET	7	6	116412493	32548413	Intron of MET(+):450bp after exon 14	Intron of HLA-DRB1(-):109bp after exon 4	GRCh37	TRANSLOCATION	MET (NM_000245) rearrangement: t(6;7)(p21.32;q31.2)(chr6:g.32548413::chr7:g.116412493)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {HLA-DRB1:MET}	0	36	0	10	0	13
P-0060558-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29683768	32417577	Intron of EWSR1(+):645bp after exon 8	Intron of WT1(-):225bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417577::chr22:g.29683768)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	23	10	23
P-0064842-T02-IM7	SOMATIC	TERT	TERT	5	5	1295989	9386167	Promoter of TERT(-):43Kb from tx start	5-UTR of SEMA5A(-):343Kb before coding start	GRCh37	INVERSION	TERT (NM_198253) rearrangement: c.-885:TERT_chr5:g.9386167inv	PRECISE		MANUAL_OK	3to3	-	8090178	41	0	59	10	91
P-0064842-T02-IM7	SOMATIC	IFNGR1	IFNGR1	6	6	137519230	148187691	Exon 7 of IFNGR1(-)	IGR: 358Kb before SAMD5(+)	GRCh37	INVERSION	IFNGR1 (NM_000416) rearrangement: c.1408:IFNGR1_chr6:g.148187691inv	PRECISE		MANUAL_OK	3to3	-	10668461	60	0	28	10	28
P-0065158-T02-IM7	SOMATIC	RBM10	TFE3	X	X	47043230	48895717	Intron of RBM10(+):1Kb before exon 18	Intron of TFE3(-):4bp after exon 4	GRCh37	INVERSION	RBM10 (NM_001204468) - TFE3 (NM_006521) rearrangement: c.2146-1224:RBM10_c.780+5:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBM10:TFE3}	1852487	60	0	126	10	138
P-0065530-T01-IM7	SOMATIC	NF1	NF1	X	17	153120288	29557820	IGR: 7Kb before L1CAM(-)	Intron of NF1(+):39bp before exon 24	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;X)(q11.2;q28)(chr17:g.29557820::chrX:g.153120288)	PRECISE		MANUAL_OK	3to5	-	0	60	0	34	10	36
P-0065580-T01-IM7	SOMATIC	GSK3B	GSK3B	10	3	7711273	119582613	Promoter of ITIH5(-):110Kb from tx start	Intron of GSK3B(-):161bp before exon 10	GRCh37	TRANSLOCATION	GSK3B (NM_002093) rearrangement: t(3;10)(q13.33;p14)(chr3:g.119582613::chr10:g.7711273)	PRECISE		MANUAL_OK	3to3	-	0	60	0	9	10	9
P-0004226-T07-IM7	SOMATIC	INPPL1	FCHSD2	11	11	71945792	72678692	Intron of INPPL1(+):133bp after exon 21	Intron of FCHSD2(-):16Kb after exon 8	GRCh37	INVERSION	INPPL1 (NM_001567) - FCHSD2 (NM_014824) rearrangement: c.2415+133:INPPL1_c.705+16441:FCHSD2inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {INPPL1:FCHSD2}	732900	60	0	6	0	6
P-0004226-T08-IM7	SOMATIC	INPPL1	FCHSD2	11	11	71945806	72678691	Intron of INPPL1(+):147bp after exon 21	Intron of FCHSD2(-):16Kb after exon 8	GRCh37	INVERSION	INPPL1 (NM_001567) - FCHSD2 (NM_014824) rearrangement: c.2415+147:INPPL1_c.705+16442:FCHSD2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {INPPL1:FCHSD2}	732885	60	0	10	10	10
P-0006346-T03-IM7	SOMATIC	TET1	TET1	10	1	70392364	245006334	Intron of TET1(+):12Kb before exon 4	Intron of COX20(+):8bp before exon 4	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(1;10)(q44;q21.3)(chr1:g.245006334::chr10:g.70392364)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {COX20:TET1}	0	22	28	24	9	72
P-0008424-T03-IM7	SOMATIC	TBX3	TBX3	12	6	115118907	166695718	Exon 2 of TBX3(-)	IGR: 23Kb before PRR18(-)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(6;12)(q27;q24.21)(chr6:g.166695718::chr12:g.115118907)	PRECISE		MANUAL_OK	3to3	-	0	60	0	90	10	90
P-0013746-T04-IM7	SOMATIC	EWSR1	FLI1	22	11	29688264	128644900	Intron of EWSR1(+):106bp after exon 11	Intron of FLI1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128644900::chr22:g.29688264)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	60	0	104	10	106
P-0021668-T02-IM7	SOMATIC	DNAJB1	PRKACA	19	19	14225506	14628281	Intron of PRKACA(-):3Kb after exon 1	Intron of DNAJB1(-):423bp before exon 2	GRCh37	DELETION	DNAJB1 (NM_006145) - PRKACA (NM_002730) fusion: c.212-423:DNAJB1_c.46+2808:PRKACAdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DNAJB1:PRKACA}	402775	60	0	57	10	58
P-0029944-T02-IM7	SOMATIC	BRCA1	BRCA1	17	17	41224611	41243011	Intron of BRCA1(-):1Kb before exon 15	Exon 11 of BRCA1(-)	GRCh37	DELETION	BRCA1 (NM_007294) rearrangement: c.4135_c.4676-1356del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18400	60	0	18	10	18
P-0029944-T02-IM7	SOMATIC	NSD1	NSD1	5	5	176562587	176565940	Exon 2 of NSD1(+)	Intron of NSD1(+):3Kb after exon 2	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.483_c.927+2909del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3353	43	0	25	10	28
P-0051005-T06-IM7	SOMATIC	GRIN2A	ARID1B	16	6	9857543	157522578	Exon 13 of GRIN2A(-)	Exon 18 of ARID1B(+)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) - ARID1B (NM_020732) rearrangement: t(6;16)(q25.3;p13.2)(chr6:g.157522578::chr16:g.9857543)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GRIN2A:ARID1B}	0	60	0	110	10	139
P-0065410-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187560983	187562178	Intron of FAT1(-):46bp before exon 4	Intron of FAT1(-):1Kb before exon 4	GRCh37	INVERSION	FAT1 (NM_005245) rearrangement: c.3581-1241_c.3581-46inv	PRECISE		MANUAL_OK	3to3	-	1195	60	0	2	6	2
P-0065427-T01-IM7	SOMATIC	ELF3	RNPEP	1	1	201974796	201983234	Exon 11 of RNPEP(+)	Intron of ELF3(+):82bp after exon 8	GRCh37	DUPLICATION	ELF3 (NM_004433) - RNPEP (NM_020216) rearrangement: c.1001+82:ELF3_c.1905:RNPEPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {ELF3:RNPEP}	8438	60	0	56	10	85
P-0065427-T01-IM7	SOMATIC	PDGFRA	PDGFRA	4	4	55132371	55137061	Intron of PDGFRA(+):1Kb before exon 6	Intron of PDGFRA(+):146bp after exon 8	GRCh37	DUPLICATION	PDGFRA (NM_006206) rearrangement: c.760-1085_c.1237+146dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	4690	60	0	16	10	16
P-0065438-T01-IM7	SOMATIC	CDK4	CDK4	12	12	58144546	64871451	Exon 5 of CDK4(-)	Intron of TBK1(+):2Kb before exon 7	GRCh37	DELETION	CDK4 (NM_000075) rearrangement: c.525:CDK4_chr12:g.64871451del	PRECISE		MANUAL_OK	3to5	-	6726905	60	0	10	10	11
P-0065439-T01-IM7	SOMATIC	VEGFA	VEGFA	6	6	43738491	43748501	5-UTR of VEGFA(+):492bp before coding start	Exon 6 of VEGFA(+)	GRCh37	INVERSION	VEGFA (NM_001171623) rearrangement: c.455:VEGFA_chr6:g.43738491inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	10010	60	0	98	10	98
P-0065442-T01-IM7	SOMATIC	CHEK2	CHEK2	22	22	29117462	29446717	Intron of CHEK2(-):2Kb before exon 5	Exon 8 of ZNRF3(+)	GRCh37	DUPLICATION	CHEK2 (NM_007194) rearrangement: c.593-1989:CHEK2_chr22:g.29446717dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	329255	41	0	20	10	23
P-0065443-T01-IM7	SOMATIC	CASP8	CASP8	2	2	202145124	202149822	Intron of CASP8(+):3Kb after exon 7	Exon 8 of CASP8(+)	GRCh37	DUPLICATION	CASP8 (NM_001080125) rearrangement: c.979+3433_c.1263dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	4698	60	0	11	10	11
P-0065445-T01-IM7	SOMATIC	SDHA	SDHA	5	3	236704	195400849	Exon 10 of SDHA(+)	5-UTR of SDHAP2(+):15Kb before coding start	GRCh37	TRANSLOCATION	SDHA (NM_004168) rearrangement: t(3;5)(q29;p15.33)(chr3:g.195400849::chr5:g.236704)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SDHA:SDHAP2}	0	23	19	9	8	21
P-0065446-T01-IM7	SOMATIC	NRF1	BRAF	7	7	129383965	140483810	Intron of NRF1(+):11Kb before exon 11	Intron of BRAF(-):853bp before exon 10	GRCh37	INVERSION	NRF1 (NM_005011) - BRAF (NM_004333) fusion: c.1349-10893:NRF1_c.1178-853:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NRF1:BRAF}	11099845	60	0	34	10	33
P-0065462-T01-IM7	SOMATIC	NOTCH2	NOTCH2	18	1	28406819	120508062	IGR: 163Kb before DSC3(-)	Intron of NOTCH2(-):13bp after exon 10	GRCh37	TRANSLOCATION	NOTCH2 (NM_024408) rearrangement: t(1;18)(p12;q12.1)(chr1:g.120508062::chr18:g.28406819)	PRECISE		MANUAL_OK	5to3	-	0	60	0	9	10	9
P-0065464-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44814652	44929493	Intron of KDM6A(+):6Kb before exon 3	Exon 17 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.226-5877_c.2593del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	114841	60	0	39	10	39
P-0065466-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1740744	1808795	Intron of TACC3(+):684bp before exon 11	Intron of FGFR3(+):47bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-48:FGFR3_c.1942-685:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68051	29	0	73	10	76
P-0065467-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12025985	39324599	Intron of ETV6(+):3Kb after exon 5	IGR: 279Kb before CPNE8(-)	GRCh37	INVERSION	ETV6 (NM_001987) rearrangement: c.1009+3082:ETV6_chr12:g.39324599inv	PRECISE		MANUAL_OK	3to3	-	27298614	60	0	38	10	38
P-0065467-T01-IM7	SOMATIC	NKX3	WRN	8	8	23540250	30924454	Exon 1 of NKX3-1(-)	Intron of WRN(+):94bp before exon 6	GRCh37	INVERSION	NKX3-1 (NM_006167) - WRN (NM_000553) rearrangement: c.153:NKX3-1_c.505-95:WRNinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NKX3-1:WRN}	7384204	60	0	2	5	2
P-0065470-T01-IM7	SOMATIC	PDE1C	EGFR	7	7	32264375	55240707	Intron of PDE1C(-):15Kb before exon 2	Exon 17 of EGFR(+)	GRCh37	INVERSION	PDE1C (NM_001191058) - EGFR (NM_005228) fusion: c.86-15224:PDE1C_c.1951:EGFRinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {PDE1C:EGFR}	22976332	60	0	18	10	21
P-0065470-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268207	55272901	Intron of EGFR(+):101bp after exon 24	Intron of EGFR(+):47bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+101_c.3272-48del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4694	60	0	63	10	66
P-0065480-T01-IM7	SOMATIC	RB1	RB1	13	13	48945935	48947546	Intron of RB1(+):2Kb before exon 12	Exon 12 of RB1(+)	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.1128-1606_c.1133del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1611	60	0	29	10	29
P-0065382-T01-IM7	SOMATIC	ETAA1	ETAA1	2	2	66648859	67631043	Promoter of MEIS1-AS3(-):2Kb from tx start	Exon 5 of ETAA1(+)	GRCh37	DELETION	ETAA1 (NM_019002) rearrangement: g.66648859_c.1229del	PRECISE		MANUAL_OK	3to5	-	982184	60	0	14	10	15
P-0065385-T01-IM7	SOMATIC	TET1	TET1	10	10	70332670	71033485	Exon 2 of TET1(+)	5-UTR of HK1(+):15Kb before coding start	GRCh37	DELETION	TET1 (NM_030625) rearrangement: c.575:TET1_chr10:g.71033485del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TET1:HK1}	700815	60	0	39	10	39
P-0065388-T01-IM7	SOMATIC	NF2	NF2	22	22	30032758	30292798	Exon 2 of NF2(+)	5-UTR of MTMR3(+):74Kb before coding start	GRCh37	DUPLICATION	NF2 (NM_000268) rearrangement: c.133:NF2_chr22:g.30292798dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {MTMR3:NF2}	260040	60	0	8	10	9
P-0065526-T01-IM7	SOMATIC	NCOR1	NCOR1	17	17	16004990	16058779	Exon 20 of NCOR1(-)	Intron of NCOR1(-):2Kb before exon 7	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.733-2070_c.2264del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	53789	60	0	32	10	33
P-0065537-T01-IM7	SOMATIC	DOT1L	DOT1L	19	19	2085921	2185727	5-UTR of MOB3A(-):13Kb before coding start	Intron of DOT1L(+):126bp before exon 3	GRCh37	DELETION	DOT1L (NM_032482) rearrangement: c.126-127:DOT1L_chr19:g.2085921del	PRECISE		MANUAL_OK	3to5	-	99806	29	0	10	10	10
P-0065545-T01-IM7	SOMATIC	TTC25	CDK12	17	17	37648612	40099891	Intron of CDK12(+):391bp before exon 4	Intron of TTC25(+):1Kb before exon 8	GRCh37	DUPLICATION	TTC25 (NM_031421) - CDK12 (NM_016507) rearrangement: c.1059-1499:TTC25_c.2109-392:CDK12dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {TTC25:CDK12}	2451279	60	0	10	0	13
P-0065576-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89716104	89721017	Intron of PTEN(+):2Kb before exon 7	Intron of PTEN(+):142bp after exon 8	GRCh37	DUPLICATION	PTEN (NM_000314) rearrangement: c.635-1506_c.1026+142dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	4913	42	0	19	10	32
P-0065576-T01-IM7	SOMATIC	SOS1	SOS1	2	2	39281905	39332455	Exon 5 of SOS1(-)	Intron of SOS1(-):15Kb after exon 1	GRCh37	DUPLICATION	SOS1 (NM_005633) rearrangement: c.87+15022_c.570dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	50550	60	0	13	10	14
P-0065576-T01-IM7	SOMATIC	KDR	KDR	4	4	55944692	55948119	3-UTR of KDR(-):1Kb after coding stop	Intron of KDR(-):3bp after exon 29	GRCh37	DUPLICATION	KDR (NM_002253) rearrangement: c.3848+4:KDR_chr4:g.55944692dup	PRECISE		MANUAL_OK	5to3	-	3427	60	0	26	10	27
P-0065643-T01-IM7	SOMATIC	EWSR1	ERG	22	21	29683679	39766776	Intron of EWSR1(+):556bp after exon 8	Intron of ERG(-):2Kb before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39766776::chr22:g.29683679)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	60	0	54	10	55
P-0061628-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974885	22188479	Intron of CDKN2A(-):4Kb before exon 2	IGR: 186Kb before CDKN2B(-)	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3678:CDKN2A_chr9:g.22188479del	PRECISE		MANUAL_OK	3to5	-	213594	52	0	2	7	2
P-0065081-T02-IM7	SOMATIC	MAPKAP1	MAPKAP1	9	9	128246860	128305336	Exon 9 of MAPKAP1(-)	Intron of MAPKAP1(-):1bp after exon 7	GRCh37	DELETION	MAPKAP1 (NM_001006617) rearrangement: c.958+2_c.1069del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	58476	54	0	3	3	3
P-0065081-T02-IM7	SOMATIC	MAPKAP1	MAPKAP1	9	9	128348005	128419929	Exon 5 of MAPKAP1(-)	Exon 4 of MAPKAP1(-)	GRCh37	DELETION	MAPKAP1 (NM_001006617) rearrangement: c.498+1_c.500del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	71924	60	0	3	5	4
P-0065414-T01-IM7	SOMATIC	MRPL48	AGO2	11	8	73514482	141595215	Intron of MRPL48(+):2Kb before exon 2	Intron of AGO2(-):2bp after exon 2	GRCh37	TRANSLOCATION	MRPL48 (NM_016055) - AGO2 (NM_012154) rearrangement: t(8;11)(q24.3;q13.4)(chr8:g.141595215::chr11:g.73514482)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {MRPL48:AGO2}	0	52	0	21	10	21
P-0065417-T01-IM7	SOMATIC	PPP2R1A	PPP2R1A	19	19	45192815	52729176	IGR: 10Kb before CEACAM16(+)	Intron of PPP2R1A(+):41bp before exon 15	GRCh37	DELETION	PPP2R1A (NM_014225) rearrangement: c.1754-42:PPP2R1A_chr19:g.45192815del	PRECISE		MANUAL_OK	3to5	-	7536361	60	0	49	10	51
P-0065419-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123159808	123173507	Intron of STAG2(+):40bp after exon 4	Intron of STAG2(+):2Kb after exon 6	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.123+40_c.385+2034del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	13699	48	0	4	8	4
P-0065550-T01-IM7	SOMATIC	TRAF7	TRAF7	16	16	886697	2224123	IGR: 17Kb before LMF1(-)	Intron of TRAF7(+):74bp after exon 13	GRCh37	DELETION	TRAF7 (NM_032271) rearrangement: c.1263+74:TRAF7_chr16:g.886697del	PRECISE		MANUAL_OK	3to5	-	1337426	60	0	21	10	22
P-0065554-T01-IM7	SOMATIC	BBC3	BBC3	19	3	47730096	50331294	Intron of BBC3(-):85bp before exon 3	Intron of HYAL3(-):348bp before exon 3	GRCh37	TRANSLOCATION	BBC3 (NM_001127240) rearrangement: t(3;19)(p21.31;q13.32)(chr3:g.50331294::chr19:g.47730096)	PRECISE		MANUAL_OK	3to3	-	0	60	0	19	10	18
P-0065554-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882468	42868212	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1707:TMPRSS2_c.40-64924:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2985744	60	0	74	10	77
P-0065669-T01-IM7	SOMATIC	BCL6	BCL6	3	3	187449635	190579242	Exon 4 of BCL6(-)	Intron of GMNC(-):595bp before exon 2	GRCh37	INVERSION	BCL6 (NM_001706) rearrangement: c.245:BCL6_chr3:g.190579242inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3129607	60	0	75	10	85
P-0065672-T01-IM7	SOMATIC	EWSR1	FLI1	22	11	29685397	128658571	Intron of EWSR1(+):622bp after exon 9	Intron of FLI1(+):7Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128658571::chr22:g.29685397)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	76	10	76
P-0065731-T01-IM7	SOMATIC	MAPKAP1	KIF2A	9	5	128206767	61656674	Intron of MAPKAP1(-):12bp after exon 11	Intron of KIF2A(+):394bp before exon 10	GRCh37	TRANSLOCATION	MAPKAP1 (NM_001006617) - KIF2A (NM_001098511) rearrangement: t(5;9)(q12.1;q33.3)(chr5:g.61656674::chr9:g.128206767)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {MAPKAP1:KIF2A}	0	60	0	12	0	13
P-0009931-T03-IM7	SOMATIC	CREBBP	CREBBP	16	16	3794856	3796733	Intron of CREBBP(-):38bp after exon 23	Intron of CREBBP(-):1Kb before exon 22	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.3837-1378_c.3982+39del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	1877	54	0	34	10	34
P-0065115-T02-IM7	SOMATIC	ICOSLG	ICOSLG	21	21	45655566	45663898	Intron of ICOSLG(-):121bp before exon 4	Promoter of DNMT3L(-):2Kb from tx start	GRCh37	DELETION	ICOSLG (NM_015259) rearrangement: c.407-121:ICOSLG_chr21:g.45663898del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {DNMT3L:ICOSLG}	8332	60	0	8	0	8
P-0065337-T02-IM7	SOMATIC	SDHA	SDHA	5	5	218632	497530	Intron of SDHA(+):99bp after exon 1	Intron of SLC9A3(-):5Kb before exon 2	GRCh37	DELETION	SDHA (NM_004168) rearrangement: c.63+99:SDHA_chr5:g.497530del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	278898	48	0	13	10	18
P-0065678-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37686924	38074515	Exon 14 of CDK12(+)	5-UTR of GSDMB(-):13Kb before coding start	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3828:CDK12_chr17:g.38074515inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GSDMB:CDK12}	387591	59	0	31	10	44
P-0065678-T01-IM7	SOMATIC	IKZF3	ERBB2	17	17	37881089	37951939	Exon 20 of ERBB2(+)	Intron of IKZF3(-):3Kb before exon 4	GRCh37	INVERSION	IKZF3 (NM_012481) - ERBB2 (NM_004448) rearrangement: c.164-2753:IKZF3_c.2418:ERBB2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IKZF3:ERBB2}	70850	60	0	9	0	9
P-0065723-T01-IM7	SOMATIC	NOTCH4	CSNK2B	6	6	31637100	32190585	Exon 6 of CSNK2B(+)	Intron of NOTCH4(-):2bp before exon 3	GRCh37	INVERSION	NOTCH4 (NM_004557) - CSNK2B (NM_001320) rearrangement: c.156-2:NOTCH4_c.372:CSNK2Binv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH4:CSNK2B}	553485	60	0	72	10	79
P-0065728-T01-IM7	SOMATIC	NF1	NF1	17	17	29662315	29663651	Intron of NF1(+):266bp after exon 39	Intron of NF1(+):1bp before exon 41	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.6006+266_c.6148-2del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	1336	60	0	5	0	5
P-0065728-T01-IM7	SOMATIC	PPM1D	PPM1D	17	17	37974943	58734125	Intron of IKZF3(-):11Kb after exon 3	Exon 5 of PPM1D(+)	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: c.1183:PPM1D_chr17:g.37974943del	PRECISE		MANUAL_OK	3to5	-	20759182	57	0	13	10	14
P-0012428-T04-IM7	SOMATIC	TRIP13	TRIP13	5	1	917116	14259879	Intron of TRIP13(+):6bp before exon 13	IGR: 184Kb before PRDM2(+)	GRCh37	TRANSLOCATION	TRIP13 (NM_004237) rearrangement: t(1;5)(p36.21;p15.33)(chr1:g.14259879::chr5:g.917116)	PRECISE		MANUAL_OK	5to5	-	0	60	0	48	10	83
P-0051005-T07-IM7	SOMATIC	GRIN2A	ARID1B	16	6	9857543	157522578	Exon 13 of GRIN2A(-)	Exon 18 of ARID1B(+)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) - ARID1B (NM_020732) rearrangement: t(6;16)(q25.3;p13.2)(chr6:g.157522578::chr16:g.9857543)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GRIN2A:ARID1B}	0	60	0	224	10	333
P-0062311-T02-IM7	SOMATIC	SDHC	ARHGEF11	1	1	156936751	161298326	Intron of ARHGEF11(-):1Kb after exon 10	Intron of SDHC(+):39bp after exon 3	GRCh37	INVERSION	SDHC (NM_003001) - ARHGEF11 (NM_198236) rearrangement: c.179+39:SDHC_c.963+1028:ARHGEF11inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SDHC:ARHGEF11}	4361575	60	0	52	10	52
P-0062311-T02-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101899570	101909985	Intron of TGFBR1(+):570bp before exon 4	Exon 8 of TGFBR1(+)	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.575-571_c.1305del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10415	60	0	7	10	7
P-0064946-T02-IM7	SOMATIC	HOXB13	ABCD3	17	1	46805903	94932639	Exon 1 of HOXB13(-)	Intron of ABCD3(+):835bp before exon 4	GRCh37	TRANSLOCATION	HOXB13 (NM_006361) - ABCD3 (NM_002858) rearrangement: t(1;17)(p21.3;q21.32)(chr1:g.94932639::chr17:g.46805903)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {HOXB13:ABCD3}	0	60	0	24	10	34
P-0065588-T01-IM7	SOMATIC	MST1R	MST1R	3	3	49940457	49941433	Exon 1 of MST1R(-)	Promoter of MST1R(-):17Kb from tx start	GRCh37	DELETION	MST1R (NM_002447) rearrangement: c.586:MST1R_chr3:g.49941433del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	976	59	0	3	5	3
P-0022117-T04-IM7	SOMATIC	ASXL2	ASXL2	2	2	25978549	25990354	Intron of ASXL2(-):337bp after exon 9	Intron of ASXL2(-):97bp after exon 7	GRCh37	DELETION	ASXL2 (NM_018263) rearrangement: c.775+98_c.1036+338del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	11805	60	0	33	10	34
P-0022117-T04-IM7	SOMATIC	TMPRSS2	ERG	21	21	39862243	42866328	Intron of ERG(-):8Kb after exon 1	Exon 3 of TMPRSS2(-)	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.304:TMPRSS2_c.18+8044:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TMPRSS2:ERG}	3004085	60	0	180	10	187
P-0035466-T05-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18477917	18481516	Intron of PIK3C2G(+):51bp before exon 8	Intron of PIK3C2G(+):3Kb after exon 8	GRCh37	DUPLICATION	PIK3C2G (NM_004570) rearrangement: c.1209-52_c.1272+3484dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	3599	60	0	10	10	10
P-0054353-T02-IM7	SOMATIC	FGFR3	CCDC149	4	4	1808701	24839121	Intron of FGFR3(+):40bp after exon 17	Intron of CCDC149(-):99bp before exon 6	GRCh37	INVERSION	FGFR3 (NM_000142) - CCDC149 (NM_001130726) fusion: c.2274+40:FGFR3_c.490-99:CCDC149inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {FGFR3:CCDC149}	23030420	60	0	111	10	181
P-0054353-T02-IM7	SOMATIC	TERT	TERT	5	5	1295554	144169209	Promoter of TERT(-):42Kb from tx start	IGR: 619Kb before KCTD16(+)	GRCh37	INVERSION	TERT (NM_198253) rearrangement: g.1295554_g.144169209inv	PRECISE		MANUAL_OK	5to5	-	142873655	60	0	162	10	189
P-0059173-T01-IM7	SOMATIC	AR	AR	X	X	66935273	66943538	Intron of AR(+):2Kb before exon 5	Exon 8 of AR(+)	GRCh37	DELETION	AR (NM_000044) rearrangement: c.2174-2047_c.2618del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	8265	60	0	64	10	66
P-0059481-T04-IM7	SOMATIC	ERCC2	ERCC2	19	19	40537978	45868242	3-UTR of ZNF780B(-):2Kb after coding stop	Intron of ERCC2(-):30bp before exon 7	GRCh37	INVERSION	ERCC2 (NM_000400) rearrangement: c.478-30:ERCC2_chr19:g.40537978inv	PRECISE		MANUAL_OK	5to5	-	5330264	60	0	67	10	73
P-0061240-T04-IM7	SOMATIC	ARID1A	ARID1A	1	1	27057875	27401689	Exon 3 of ARID1A(+)	IGR: 24Kb before SLC9A1(-)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1583:ARID1A_chr1:g.27401689del	PRECISE		MANUAL_OK	3to5	-	343814	47	0	32	10	37
P-0063241-T02-IM7	SOMATIC	NTRK2	NTRK2	9	9	87480453	101820216	Intron of NTRK2(+):2Kb before exon 16	Intron of COL15A1(+):2Kb after exon 35	GRCh37	INVERSION	NTRK2 (NM_006180) rearrangement: c.1445-1705:NTRK2_chr9:g.101820216inv	IMPPRECISE		MANUAL_OK	5to5	-	14339763	60	0	5	0	5
P-0064546-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39834314	42875978	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+3899:TMPRSS2_c.19-16770:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3041664	56	0	27	10	28
P-0065035-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968390	21973665	Intron of CDKN2A(-):149bp before exon 3	Intron of CDKN2A(-):2Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-149:CDKN2A_c.194-2458:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	5275	60	0	35	10	37
P-0065469-T02-IM7	SOMATIC	EML4	ALK	2	2	29446565	42506041	Intron of ALK(-):171bp before exon 20	Intron of EML4(+):2Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-1949:EML4_c.3173-171:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13059476	36	0	11	10	20
P-0065561-T03-IM7	SOMATIC	EGFR	EGFR	7	7	55268207	55272901	Intron of EGFR(+):101bp after exon 24	Intron of EGFR(+):47bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+101_c.3272-48del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4694	60	0	31	10	31
P-0065620-T01-IM7	SOMATIC	ATM	ATM	11	11	101043742	108197038	IGR: 44Kb before LOC101054525(+)	Intron of ATM(+):86bp after exon 47	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.6975+86:ATM_chr11:g.101043742inv	PRECISE		MANUAL_OK	3to3	-	7153296	60	0	21	10	21
P-0065704-T01-IM7	SOMATIC	ALK	ALK	2	2	29448289	236220050	Intron of ALK(-):37bp after exon 19	IGR: 183Kb before AGAP1(+)	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3172+38:ALK_chr2:g.236220050inv	PRECISE		MANUAL_OK	3to3	-	206771761	51	0	7	10	8
P-0065705-T01-IM7	SOMATIC	TP53	TP53	17	17	7578072	7582678	Intron of TP53(-):104bp after exon 6	5-UTR of TP53(-):10Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+105:TP53_chr17:g.7582678del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4606	60	0	10	10	10
P-0065706-T01-IM7	SOMATIC	NOTCH1	EXD3	9	9	139396366	140219554	Intron of NOTCH1(-):1bp before exon 30	Intron of EXD3(-):959bp before exon 18	GRCh37	DUPLICATION	NOTCH1 (NM_017617) - EXD3 (NM_017820) rearrangement: c.5473-1:NOTCH1_c.1999-959:EXD3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NOTCH1:EXD3}	823188	60	0	36	10	36
P-0065740-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67591064	67593404	Exon 13 of PIK3R1(+)	Exon 16 of PIK3R1(+)	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.1657_c.2150del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2340	60	0	2	8	2
P-0065741-T01-IM7	SOMATIC	RAD51B	RAD51B	14	14	68282363	68878164	Intron of ZFYVE26(-):123bp after exon 2	Exon 9 of RAD51B(+)	GRCh37	DELETION	RAD51B (NM_133509) rearrangement: c.877:RAD51B_chr14:g.68282363del	PRECISE		MANUAL_OK	3to5	-	595801	60	0	37	10	38
P-0065752-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27104700	27106287	Intron of ARID1A(+):813bp before exon 20	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.5125-814_c.5898del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1587	48	0	48	10	54
P-0065789-T01-IM7	SOMATIC	CDK12	CDK12	17	10	37682413	120429652	Exon 13 of CDK12(+)	IGR: 11Kb before CACUL1(-)	GRCh37	TRANSLOCATION	CDK12 (NM_016507) rearrangement: t(10;17)(q26.11;q12)(chr10:g.120429652::chr17:g.37682413)	PRECISE		MANUAL_OK	5to3	-	0	60	0	72	10	75
P-0065789-T01-IM7	SOMATIC	CARM1	COL20A1	20	19	61943393	11023067	Exon 14 of COL20A1(+)	Intron of CARM1(+):97bp after exon 5	GRCh37	TRANSLOCATION	CARM1 (NM_199141) - COL20A1 (NM_020882) rearrangement: t(19;20)(p13.2;q13.33)(chr19:g.11023067::chr20:g.61943393)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CARM1:COL20A1}	0	60	0	21	0	25
P-0065826-T01-IM7	SOMATIC	NCOA4	RET	10	10	43610857	51587635	Intron of RET(+):673bp after exon 11	Intron of TIMM23B(+):145Kb before exon 7	GRCh37	DUPLICATION	NCOA4 (NM_001145260) - RET (NM_020975) fusion: c.2136+673:RET_c.*23+937NCOA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TIMM23B:RET}	7976778	60	0	50	10	50
P-0065827-T01-IM7	SOMATIC	CIC	MEGF8	19	19	42794549	42850836	Exon 10 of CIC(+)	Intron of MEGF8(+):2Kb after exon 12	GRCh37	DELETION	CIC (NM_015125) - MEGF8 (NM_001410) rearrangement: c.1629:CIC_c.2097+1851:MEGF8del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CIC:MEGF8}	56287	58	0	73	0	83
P-0065827-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42843925	42845753	Intron of TMPRSS2(-):17bp before exon 10	Intron of TMPRSS2(-):330bp before exon 9	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.839-330_c.1011-17del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1828	60	0	76	10	77
P-0065831-T01-IM7	SOMATIC	ARFGAP1	RTEL1	20	20	61914490	62326464	Intron of ARFGAP1(+):287bp after exon 9	Exon 33 of RTEL1(+)	GRCh37	DELETION	ARFGAP1 (NM_175609) - RTEL1 (NM_032957) rearrangement: c.717+287:ARFGAP1_c.3461:RTEL1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARFGAP1:RTEL1}	411974	60	0	21	10	21
P-0065832-T01-IM7	SOMATIC	CARD11	CARD11	7	7	857936	2966452	Intron of SUN1(+):800bp after exon 2	Intron of CARD11(-):27bp before exon 14	GRCh37	INVERSION	CARD11 (NM_032415) rearrangement: c.1755-27:CARD11_chr7:g.857936inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CARD11:SUN1}	2108516	60	0	6	10	6
P-0065843-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	130714144	139396083	Intron of FAM102A(-):1Kb before exon 4	Intron of NOTCH1(-):116bp after exon 30	GRCh37	INVERSION	NOTCH1 (NM_017617) rearrangement: c.5638+117:NOTCH1_chr9:g.130714144inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	8681939	60	0	17	10	17
P-0065845-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39854043	42873982	Intron of ERG(-):16Kb after exon 1	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3866:TMPRSS2_c.18+16244:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3019939	60	0	28	10	28
P-0065845-T01-IM7	SOMATIC	SHQ1	SHQ1	3	3	72020705	72866251	IGR: 64Kb before LINC00877(-)	Intron of SHQ1(-):129bp after exon 7	GRCh37	DELETION	SHQ1 (NM_018130) rearrangement: c.882+130:SHQ1_chr3:g.72020705del	PRECISE		MANUAL_OK	3to5	-	845546	49	0	21	10	21
P-0065869-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39831304	42869355	Intron of ERG(-):14Kb before exon 2	Intron of TMPRSS2(-):690bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+691:TMPRSS2_c.19-13760:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3038051	60	0	16	10	16
P-0065876-T01-IM7	SOMATIC	KIF5B	RET	10	10	32313866	43611299	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):732bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-1902:KIF5B_c.2137-733:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297433	58	0	8	10	13
P-0065876-T01-IM7	SOMATIC	NTRK2	NTRK2	13	9	57097734	87479089	IGR: 617Kb before PRR20D(+)	Intron of NTRK2(+):3Kb before exon 16	GRCh37	TRANSLOCATION	NTRK2 (NM_006180) rearrangement: t(9;13)(q21.33;q21.1)(chr9:g.87479089::chr13:g.57097734)	PRECISE		MANUAL_OK	5to5	-	0	60	0	11	10	12
P-0040965-T04-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39968609	42874875	3-UTR of ERG(-):65Kb after coding stop	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-4759:TMPRSS2_chr21:g.39968609del	PRECISE		MANUAL_OK	3to5	-	2906266	60	0	145	10	150
P-0061850-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29685975	128646072	Intron of EWSR1(+):1Kb after exon 9	Intron of FLI1(+):3Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128646072::chr22:g.29685975)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	43	10	43
P-0064390-T01-IM7	SOMATIC	BLM	BLM	15	15	90355192	91312366	5-UTR of ANPEP(-):27Kb before coding start	Exon 11 of BLM(+)	GRCh37	INVERSION	BLM (NM_000057) rearrangement: c.2311:BLM_chr15:g.90355192inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {BLM:ANPEP}	957174	60	0	10	10	10
P-0064390-T01-IM7	SOMATIC	CDK12	CDK12	17	17	37681086	38688146	Exon 12 of CDK12(+)	IGR: 22Kb before CCR7(-)	GRCh37	INVERSION	CDK12 (NM_016507) rearrangement: c.3255:CDK12_chr17:g.38688146inv	PRECISE		MANUAL_OK	3to3	-	1007060	60	0	5	10	5
P-0041905-T04-IM7	SOMATIC	CSF1R	CSF1R	5	5	149460764	150841228	Intron of CSF1R(-):177bp before exon 3	Intron of SLC36A1(+):2Kb before exon 3	GRCh37	DELETION	CSF1R (NM_005211) rearrangement: c.50-177:CSF1R_chr5:g.150841228del	PRECISE		MANUAL_OK	3to5	-	1380464	60	0	20	10	20
P-0061518-T01-IM7	SOMATIC	PRKCI	PRKCI	3	3	170016874	171186451	Exon 17 of PRKCI(+)	IGR: 122Kb before TNIK(-)	GRCh37	INVERSION	PRKCI (NM_002740) rearrangement: c.1679:PRKCI_chr3:g.171186451inv	PRECISE		MANUAL_OK	5to5	-	1169577	60	0	8	7	9
P-0064310-T04-IM7	SOMATIC	KIAA1549	BRAF	7	7	138542325	140493446	Intron of KIAA1549(-):4Kb after exon 16	Intron of BRAF(-):661bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5247+3560:KIAA1549_c.1140+662:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1951121	60	0	13	10	14
P-0064711-T02-IM7	SOMATIC	CCND3	CCND3	8	6	114045689	41904405	Intron of CSMD3(-):14Kb before exon 6	Exon 4 of CCND3(-)	GRCh37	TRANSLOCATION	CCND3 (NM_001760) rearrangement: t(6;8)(p21.1;q23.3)(chr6:g.41904405::chr8:g.114045689)	PRECISE		MANUAL_OK	3to3	-	0	60	0	10	10	10
P-0065575-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47102329	47103932	Intron of SETD2(-):1Kb after exon 14	Intron of SETD2(-):96bp before exon 14	GRCh37	DUPLICATION	SETD2 (NM_014159) rearrangement: c.6110-96_c.6293+1324dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	1603	60	0	21	10	21
P-0065903-T01-IM7	SOMATIC	MPL	MPL	1	1	16142542	43812324	IGR: 9Kb before UQCRHL(-)	Intron of MPL(+):24bp after exon 7	GRCh37	INVERSION	MPL (NM_005373) rearrangement: c.1165+24:MPL_chr1:g.16142542inv	PRECISE		MANUAL_OK	3to3	-	27669782	60	0	102	10	104
P-0065903-T01-IM7	SOMATIC	JAK1	JAK1	1	1	65281464	65300435	Intron of RAVER2(+):941bp after exon 11	Intron of JAK1(-):95bp before exon 25	GRCh37	DUPLICATION	JAK1 (NM_002227) rearrangement: c.3370-95:JAK1_chr1:g.65281464dup	PRECISE		MANUAL_OK	5to3	-	18971	60	0	49	10	53
P-0065903-T01-IM7	SOMATIC	CDKN1B	CDKN1B	12	4	12870789	88311153	Exon 1 of CDKN1B(+)	Intron of HSD17B11(-):859bp after exon 1	GRCh37	TRANSLOCATION	CDKN1B (NM_004064) rearrangement: t(4;12)(q22.1;p13.1)(chr4:g.88311153::chr12:g.12870789)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	55	10	56
P-0065903-T01-IM7	SOMATIC	TERT	TERT	5	5	1295218	1345017	Promoter of TERT(-):42Kb from tx start	Promoter of CLPTM1L(-):27Kb from tx start	GRCh37	DELETION	TERT (NM_198253)  rearrangement: g.1295218_g.1345017del	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {CLPTM1L:TERT}	49799	60	0	59	0	60
P-0065903-T01-IM7	SOMATIC	APC	APC	5	5	111799767	112154816	IGR: 44Kb before EPB41L4A-AS2(+)	Exon 10 of APC(+)	GRCh37	DUPLICATION	APC (NM_000038) rearrangement: c.1087:APC_chr5:g.111799767dup	PRECISE		MANUAL_OK	5to3	-	355049	41	0	31	10	61
P-0065904-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39871527	42867117	Promoter of ERG(-):120Kb from tx start	Intron of TMPRSS2(-):612bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-612:TMPRSS2_chr21:g.39871527del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2995590	60	0	24	10	24
P-0065904-T01-IM7	SOMATIC	LRRFIP1	PIK3R1	5	2	67589413	238659630	Intron of PIK3R1(+):102bp after exon 10	Intron of LRRFIP1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	LRRFIP1 (NM_001137552) - PIK3R1 (NM_181523) rearrangement: t(2;5)(q37.3;q13.1)(chr2:g.238659630::chr5:g.67589413)	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {LRRFIP1:PIK3R1}	0	60	0	5	0	5
P-0065906-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3900891	3934415	Exon 2 of CREBBP(-)	IGR: 63Kb before LOC102724927(-)	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.205:CREBBP_chr16:g.3934415dup	PRECISE		MANUAL_OK	5to3	-	33524	48	0	9	10	9
P-0065906-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968346	21971249	Intron of CDKN2A(-):105bp before exon 3	Intron of CDKN2A(-):42bp before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-105:CDKN2A_c.194-42:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2903	60	0	23	10	25
P-0065933-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55088691	55221786	Intron of EGFR(+):2Kb after exon 1	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+1633_c.830del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	133095	60	0	60	10	61
P-0065940-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40001528	42873544	3-UTR of ERG(-):32Kb after coding stop	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-3428:TMPRSS2_chr21:g.40001528del	PRECISE		MANUAL_OK	3to5	-	2872016	60	0	14	10	14
P-0065940-T01-IM7	SOMATIC	ENPP6	TMPRSS2	21	4	42873641	185022680	Intron of TMPRSS2(-):4Kb before exon 2	Intron of ENPP6(-):4Kb before exon 7	GRCh37	TRANSLOCATION	ENPP6 (NM_153343) - TMPRSS2 (NM_001135099) rearrangement: t(4;21)(q35.1;q22.3)(chr4:g.185022680::chr21:g.42873641)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ENPP6:TMPRSS2}	0	60	0	17	10	18
P-0065971-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46124892	46134836	Intron of ARID2(+):107bp before exon 3	Intron of ARID2(+):10Kb after exon 3	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.187-108_c.284+9739inv	PRECISE		MANUAL_OK	5to5	-	9944	60	0	7	10	7
P-0065971-T01-IM7	SOMATIC	RB1	RB1	13	13	48954114	48960263	Intron of RB1(+):74bp before exon 15	Intron of RB1(+):5Kb after exon 17	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.1390-75_c.1695+4684inv	PRECISE		MANUAL_OK	5to5	-	6149	60	0	43	10	45
P-0065974-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11095211	11096980	Intron of SMARCA4(+):162bp after exon 2	Exon 4 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.222+162_c.471del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1769	60	0	63	10	66
P-0065979-T01-IM7	SOMATIC	IRF2BP2	RUNX1	21	1	36259555	234743904	Intron of RUNX1(-):162bp before exon 4	Intron of IRF2BP2(-):288bp after exon 1	GRCh37	TRANSLOCATION	IRF2BP2 (NM_001077397) - RUNX1 (NM_001754) rearrangement: t(1;21)(q42.3;q22.12)(chr1:g.234743904::chr21:g.36259555)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {IRF2BP2:RUNX1}	0	60	0	37	0	36
P-0065979-T01-IM7	SOMATIC	DAXX	DAXX	6	2	33288920	49596344	Exon 3 of DAXX(-)	IGR: 407Kb before FSHR(-)	GRCh37	TRANSLOCATION	DAXX (NM_001141970) rearrangement: t(2;6)(p16.3;p21.32)(chr2:g.49596344::chr6:g.33288920)	PRECISE		MANUAL_OK	5to3	-	0	60	0	5	10	5
P-0065979-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971024	21981170	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-9963_c.377del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10146	60	0	68	10	68
P-0066021-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48538623	48581144	IGR: 18Kb before SMAD4(+)	Intron of SMAD4(+):6bp before exon 5	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.455-7:SMAD4_chr18:g.48538623del	PRECISE		MANUAL_OK	3to5	-	42521	60	0	18	10	18
P-0066022-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138541089	140488035	Intron of KIAA1549(-):4Kb before exon 17	Intron of BRAF(-):651bp before exon 9	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5248-4074:KIAA1549_c.1141-651:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1946946	60	0	43	10	45
P-0036265-T04-IM7	SOMATIC	GOPC	ROS1	6	6	117644742	117886239	Intron of ROS1(-):752bp after exon 34	Intron of DCBLD1(+):5Kb before exon 15	GRCh37	DELETION	GOPC (NM_020399) - ROS1 (NM_002944) fusion (GOPC exons 1-8 fused to ROS1 exons 34-43): c.1259-1692:GOPC_c.5641+753:ROS1del	PRECISE		MANUAL_OK	3to5	-	241497	60	0	6	10	6
P-0065918-T01-IM7	SOMATIC	NBN	RB1CC1	8	8	53542389	90993775	Intron of RB1CC1(-):640bp after exon 21	Intron of NBN(-):24bp before exon 3	GRCh37	DELETION	NBN (NM_002485) - RB1CC1 (NM_014781) rearrangement: c.172-24:NBN_c.4499+641:RB1CC1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NBN:RB1CC1}	37451386	60	0	3	10	3
P-0065920-T01-IM7	SOMATIC	NFKBIA	NFKBIA	14	14	35871651	35873759	Exon 5 of NFKBIA(-)	Exon 1 of NFKBIA(-)	GRCh37	DELETION	NFKBIA (NM_020529) rearrangement: c.92_c.855del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2108	60	0	64	10	65
P-0065975-T01-IM7	SOMATIC	PTEN	PTEN	10	3	89725008	124807656	Intron of PTEN(+):35bp before exon 9	Intron of SLC12A8(-):442bp before exon 12	GRCh37	TRANSLOCATION	PTEN (NM_000314) rearrangement: t(3;10)(q21.2;q23.31)(chr3:g.124807656::chr10:g.89725008)	PRECISE		MANUAL_OK	5to3	-	0	52	0	12	10	14
P-0065975-T01-IM7	SOMATIC	RB1	RB1	13	1	48937930	193565088	Intron of RB1(+):837bp after exon 8	IGR: 291Kb before LINC01031(+)	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(1;13)(q31.2;q14.2)(chr1:g.193565088::chr13:g.48937930)	PRECISE		MANUAL_OK	3to5	-	0	60	0	20	10	21
P-0065975-T01-IM7	SOMATIC	PIEZO1	FANCA	16	16	88850813	89806428	Intron of PIEZO1(-):495bp after exon 1	Exon 39 of FANCA(-)	GRCh37	DUPLICATION	PIEZO1 (NM_001142864) - FANCA (NM_000135) rearrangement: c.64+496:PIEZO1_c.3908:FANCAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PIEZO1:FANCA}	955615	60	0	33	10	34
P-0066001-T01-IM7	SOMATIC	BAP1	PBRM1	3	3	52437041	52595303	Intron of BAP1(-):112bp after exon 14	Intron of PBRM1(-):479bp after exon 26	GRCh37	DUPLICATION	BAP1 (NM_004656) - PBRM1 (NM_018313) rearrangement: c.1890+113:BAP1_c.4132+480:PBRM1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BAP1:PBRM1}	158262	60	0	19	10	19
P-0066023-T01-IM7	SOMATIC	CD274	EYA1	9	8	5457250	72248353	Exon 3 of CD274(+)	Intron of EYA1(-):2Kb before exon 4	GRCh37	TRANSLOCATION	CD274 (NM_014143) - EYA1 (NM_172058) rearrangement: t(8;9)(q13.3;p24.1)(chr8:g.72248353::chr9:g.5457250)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CD274:EYA1}	0	60	0	102	10	102
P-0066048-T01-IM7	SOMATIC	PMS2	PMS2	7	7	1505996	6038727	IGR: 4Kb before INTS1(-)	Intron of PMS2(-):11bp after exon 6	GRCh37	DELETION	PMS2 (NM_000535) rearrangement: c.705+12:PMS2_chr7:g.1505996del	PRECISE		MANUAL_OK	3to5	-	4532731	60	0	84	10	89
P-0066052-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39860896	42875678	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4199:TMPRSS2_c.18+9391:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3014782	60	0	12	10	12
P-0066053-T01-IM7	SOMATIC	EZH1	EZH1	18	17	9943582	40855832	Intron of VAPA(+):1Kb before exon 5	Exon 19 of EZH1(-)	GRCh37	TRANSLOCATION	EZH1 (NM_001991) rearrangement: t(17;18)(q21.2;p11.22)(chr17:g.40855832::chr18:g.9943582)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	17	10	17
P-0066054-T01-IM7	SOMATIC	FANCC	FANCC	9	9	97869423	97893882	Exon 14 of FANCC(-)	Intron of FANCC(-):4Kb after exon 8	GRCh37	DUPLICATION	FANCC (NM_000136) rearrangement: c.843+3746_c.1458dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	24459	60	0	4	10	5
P-0066058-T01-IM7	SOMATIC	KDM5A	KDM5A	12	11	441162	72494228	Intron of KDM5A(-):58bp before exon 13	5-UTR of STARD10(-):28Kb before coding start	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(11;12)(q13.4;p13.33)(chr11:g.72494228::chr12:g.441162)	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {STARD10:KDM5A}	0	60	0	9	0	9
P-0066058-T01-IM7	SOMATIC	PKD1	CREBBP	16	16	2146340	3782071	Intron of PKD1(-):808bp after exon 34	Intron of CREBBP(-):133bp before exon 29	GRCh37	DUPLICATION	PKD1 (NM_001009944) - CREBBP (NM_004380) rearrangement: c.10499+809:PKD1_c.4729-133:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PKD1:CREBBP}	1635731	60	0	6	10	6
P-0048660-T02-IM7	SOMATIC	SRC	SRC	20	20	36024676	36271523	Exon 8 of SRC(+)	IGR: 24Kb before LINC00489(-)	GRCh37	INVERSION	SRC (NM_198291) rearrangement: c.665:SRC_chr20:g.36271523inv	PRECISE		MANUAL_OK	5to5	-	246847	60	0	44	10	48
P-0048660-T02-IM7	SOMATIC	EWSR1	EWSR1	22	20	29683738	56148508	Intron of EWSR1(+):615bp after exon 8	IGR: 12Kb before PCK1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(20;22)(q13.31;q12.2)(chr20:g.56148508::chr22:g.29683738)	PRECISE		MANUAL_OK	5to3	-	0	60	0	24	10	24
P-0052103-T03-IM7	SOMATIC	SRSF2	SRSF2	17	17	74728768	74732641	Promoter of SRSF2(-):1Kb from tx start	Intron of SRSF2(-):95bp before exon 2	GRCh37	DELETION	SRSF2 (NM_003016) rearrangement: c.363-95:SRSF2_chr17:g.74728768del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3873	55	0	5	7	5
P-0065027-T03-IM7	SOMATIC	KDM5A	FAM69A	12	1	415999	93411462	Intron of KDM5A(-):112bp after exon 24	Intron of FAM69A(-):15Kb after exon 1	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) - FAM69A (NM_001006605) rearrangement: t(1;12)(p22.1;p13.33)(chr1:g.93411462::chr12:g.415999)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KDM5A:FAM69A}	0	60	0	17	10	17
P-0065494-T02-IM7	SOMATIC	TET1	TET1	10	10	70450614	70452608	Exon 12 of TET1(+)	3-UTR of TET1(+):121Kb after coding stop	GRCh37	DELETION	TET1 (NM_030625) rearrangement: c.5454:TET1_chr10:g.70452608del	PRECISE		MANUAL_OK	3to5	-	1994	60	0	21	10	22
P-0066030-T01-IM7	SOMATIC	RASA1	RASA1	5	5	86670117	88653558	Exon 14 of RASA1(+)	IGR: 468Kb before MEF2C-AS1(+)	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.1914:RASA1_chr5:g.88653558del	PRECISE		MANUAL_OK	3to5	-	1983441	60	0	3	8	3
P-0066030-T01-IM7	SOMATIC	KIAA1549	BRAF	7	7	138538187	140482785	Intron of KIAA1549(-):1Kb before exon 17	Intron of BRAF(-):35bp after exon 10	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5248-1172:KIAA1549_c.1314+36:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1944598	60	0	3	8	3
P-0066071-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21972058	21974581	Intron of CDKN2A(-):851bp before exon 2	Exon 1 of CDKN2A(-)	GRCh37	DUPLICATION	CDKN2A (NM_058195) rearrangement: c.194-3374_c.194-851dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	2523	60	0	6	8	6
P-0066073-T01-IM7	SOMATIC	SOX9	SOX9	17	17	70119236	70120468	Intron of SOX9(+):123bp after exon 2	Exon 3 of SOX9(+)	GRCh37	DELETION	SOX9 (NM_000346) rearrangement: c.685+123_c.1470del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1232	60	0	13	10	13
P-0066074-T01-IM7	SOMATIC	INPP4A	INPP4A	2	2	99165675	99171773	Intron of INPP4A(+):243bp after exon 14	Intron of INPP4A(+):242bp before exon 17	GRCh37	DELETION	INPP4A (NM_001134224) rearrangement: c.1178+243_c.1582-243del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	6098	60	0	20	0	21
P-0066078-T01-IM7	SOMATIC	YES1	YES1	18	18	733101	825576	Intron of YES1(-):136bp before exon 11	IGR: 79Kb before ADCYAP1(+)	GRCh37	INVERSION	YES1 (NM_005433) rearrangement: c.1292-136:YES1_chr18:g.825576inv	PRECISE		MANUAL_OK	3to3	-	92475	31	0	5	10	5
P-0066078-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76849071	76865753	Intron of ATRX(-):94bp after exon 26	Intron of ATRX(-):6Kb after exon 22	GRCh37	DUPLICATION	ATRX (NM_000489) rearrangement: c.5566+6328_c.6110+95dup	PRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	16682	60	0	19	10	19
P-0066079-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55206943	55222301	Intron of EGFR(+):3Kb before exon 2	Intron of EGFR(+):456bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-3036_c.889+456del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	15358	60	0	81	0	426
P-0066079-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268554	55272887	Intron of EGFR(+):326bp before exon 25	Intron of EGFR(+):61bp before exon 28	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2947-327_c.3272-62del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	4333	60	0	149	10	166
P-0066082-T01-IM7	SOMATIC	PTPRD	PTPRD	10	9	133285689	8449954	IGR: 319Kb before LINC01164(-)	Intron of PTPRD(-):117bp before exon 34	GRCh37	TRANSLOCATION	PTPRD (NM_002839) rearrangement: t(9;10)(p24.1;q26.3)(chr9:g.8449954::chr10:g.133285689)	IMPPRECISE		MANUAL_OK	3to3	-	0	60	0	12	0	12
P-0066085-T01-IM7	SOMATIC	P2RX5	CDKN2A	17	9	3594849	21971089	Intron of P2RX5(-):88bp after exon 2	Exon 2 of CDKN2A(-)	GRCh37	TRANSLOCATION	P2RX5 (NM_002561) - CDKN2A (NM_058195) rearrangement: t(9;17)(p21.3;p13.2)(chr9:g.21971089::chr17:g.3594849)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {P2RX5:CDKN2A}	0	60	0	108	10	128
P-0066085-T01-IM7	SOMATIC	RAF1	RAF1	3	3	12642062	15600617	Intron of RAF1(-):148bp before exon 8	Promoter of HACL1(-):2Kb from tx start	GRCh37	DELETION	RAF1 (NM_002880) rearrangement: c.835-148:RAF1_chr3:g.15600617del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {HACL1:RAF1}	2958555	60	0	95	10	103
P-0066086-T01-IM7	SOMATIC	KDM5C	KDM5C	X	12	53231096	72220792	Exon 13 of KDM5C(-)	IGR: 13Kb before TBC1D15(+)	GRCh37	TRANSLOCATION	KDM5C (NM_004187) rearrangement: t(12;X)(q21.1;p11.22)(chr12:g.72220792::chrX:g.53231096)	PRECISE		MANUAL_OK	3to3	-	0	38	0	9	10	11
P-0024534-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40083159	42870678	IGR: 28Kb before LINC00114(-)	Intron of TMPRSS2(-):562bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-562:TMPRSS2_chr21:g.40083159del	PRECISE		MANUAL_OK	3to5	-	2787519	60	0	149	10	156
P-0031827-T06-IM7	SOMATIC	EML4	ALK	2	2	29446646	42527742	Intron of ALK(-):252bp before exon 20	Intron of EML4(+):638bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-639:EML4_c.3173-252:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13081096	60	0	116	10	116
P-0032991-T02-IM7	SOMATIC	TP53	TP53	17	17	7577776	7583816	Intron of TP53(-):168bp before exon 7	5-UTR of TP53(-):11Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.673-168:TP53_chr17:g.7583816del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	6040	47	0	16	0	20
P-0051860-T03-IM7	SOMATIC	POLE	POLE	12	12	133042315	133249856	IGR: 25Kb before FBRSL1(+)	Exon 14 of POLE(-)	GRCh37	DELETION	POLE (NM_006231) rearrangement: c.1367:POLE_chr12:g.133042315del	PRECISE		MANUAL_OK	3to5	-	207541	60	0	33	10	33
P-0057591-T05-IM7	SOMATIC	PREX2	PREX2	8	8	69009194	127074944	Intron of PREX2(+):57bp before exon 22	IGR: 122Kb before LINC00861(-)	GRCh37	INVERSION	PREX2 (NM_024870) rearrangement: c.2369-58:PREX2_chr8:g.127074944inv	PRECISE		MANUAL_OK	5to5	-	58065750	60	0	76	10	86
P-0057591-T05-IM7	SOMATIC	JAK2	JAK2	9	9	5029092	5044456	Intron of JAK2(+):690bp before exon 4	Exon 5 of JAK2(+)	GRCh37	DUPLICATION	JAK2 (NM_004972) rearrangement: c.227-691_c.404dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15364	60	0	21	10	21
P-0064511-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29683280	32414829	Intron of EWSR1(+):157bp after exon 8	Intron of WT1(-):528bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414829::chr22:g.29683280)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	38	10	37
P-0065337-T03-IM7	SOMATIC	APC	APC	5	5	112154727	112156810	Exon 10 of APC(+)	Intron of APC(+):782bp before exon 11	GRCh37	DELETION	APC (NM_000038) rearrangement: c.998_c.1313-783del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2083	60	0	8	10	8
P-0065992-T01-IM7	SOMATIC	CCDC6	RET	10	10	43611698	61653659	Intron of RET(+):333bp before exon 12	Intron of CCDC6(-):12Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+12221:CCDC6_c.2137-334:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18041961	60	0	18	10	22
P-0065997-T01-IM7	SOMATIC	NF1	NF1	17	17	29668579	32642262	Intron of NF1(+):916bp after exon 46	IGR: 4Kb before CCL8(+)	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.7062+916:NF1_chr17:g.32642262inv	PRECISE		MANUAL_OK	5to5	-	2973683	60	0	6	8	6
P-0066033-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68856207	74857972	Intron of CDH1(+):79bp after exon 12	IGR: 49Kb before WDR59(-)	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.1936+79:CDH1_chr16:g.74857972inv	PRECISE		MANUAL_OK	3to3	-	6001765	60	0	18	10	19
P-0066035-T01-IM7	SOMATIC	ARID2	ARID2	12	1	46230746	16957922	Exon 8 of ARID2(+)	Promoter of CROCCP2(-):13Kb from tx start	GRCh37	TRANSLOCATION	ARID2 (NM_152641) rearrangement: t(1;12)(p36.13;q12)(chr1:g.16957922::chr12:g.46230746)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CROCCP2:ARID2}	0	60	0	31	10	42
P-0066142-T01-IM7	SOMATIC	ATR	ATR	3	3	142270064	142281822	Intron of ATR(-):920bp before exon 14	Exon 4 of ATR(-)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.422_c.2806-920del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11758	60	0	25	10	25
P-0066142-T01-IM7	SOMATIC	WHSC1	WHSC1	X	4	83983473	1920006	IGR: 206Kb before UBE2DNL(+)	Exon 5 of WHSC1(+)	GRCh37	TRANSLOCATION	WHSC1 (NM_001042424) rearrangement: t(4;X)(p16.3;q21.1)(chr4:g.1920006::chrX:g.83983473)	PRECISE		MANUAL_OK	5to5	-	0	60	0	26	10	38
P-0066145-T01-IM7	SOMATIC	HNF1A	WDR66	12	12	121416581	122377337	Exon 1 of HNF1A(+)	Intron of WDR66(+):3Kb before exon 6	GRCh37	DELETION	HNF1A (NM_000545) - WDR66 (NM_144668) rearrangement: c.10:HNF1A_c.999-3103:WDR66del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {HNF1A:WDR66}	960756	60	0	8	10	8
P-0066146-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47000836	47155287	Intron of CCDC12(-):17Kb after exon 2	Intron of SETD2(-):78bp after exon 5	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement: c.4715+79:SETD2_chr3:g.47000836inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	154451	56	0	3	10	5
P-0066146-T01-IM7	SOMATIC	ATR	ATR	3	3	141371629	142272121	IGR: 85Kb before RNF7(+)	Exon 13 of ATR(-)	GRCh37	INVERSION	ATR (NM_001184) rearrangement: c.2753:ATR_chr3:g.141371629inv	PRECISE		MANUAL_OK	5to5	-	900492	60	0	7	10	9
P-0066164-T01-IM7	SOMATIC	MUTYH	MUTYH	1	1	45799956	45808124	Intron of MUTYH(-):106bp after exon 2	Promoter of MUTYH(-):13Kb from tx start	GRCh37	INVERSION	MUTYH (NM_001128425) rearrangement: c.157+107:MUTYH_chr1:g.45808124inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	8168	60	0	6	10	6
P-0066169-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29683601	32416419	Intron of EWSR1(+):478bp after exon 8	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416419::chr22:g.29683601)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	63	10	63
P-0066197-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47148809	47158272	Intron of SETD2(-):1Kb before exon 6	Intron of SETD2(-):28bp before exon 4	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.4455-28_c.4716-1199del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	9463	60	0	18	10	18
P-0066197-T01-IM7	SOMATIC	KDR	PDGFRA	4	4	55127783	55968440	Intron of PDGFRA(+):204bp after exon 3	Intron of KDR(-):88bp after exon 14	GRCh37	INVERSION	KDR (NM_002253) - PDGFRA (NM_006206) fusion: c.2134+89:KDR_c.367+204:PDGFRAinv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KDR:PDGFRA}	840657	60	0	11	0	11
P-0066198-T01-IM7	SOMATIC	NTRK1	NTRK1	1	1	156851349	159210879	Exon 17 of NTRK1(+)	IGR: 36Kb before ACKR1(+)	GRCh37	INVERSION	NTRK1 (NM_002529) rearrangement: c.2306:NTRK1_chr1:g.159210879inv	PRECISE		MANUAL_OK	5to5	-	2359530	60	0	304	10	524
P-0041409-T05-IM7	SOMATIC	BRCA2	BRCA2	13	7	32969277	30630720	Intron of BRCA2(+):207bp after exon 25	IGR: 3Kb before GARS(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(7;13)(p14.3;q13.1)(chr7:g.30630720::chr13:g.32969277)	PRECISE		MANUAL_OK	3to5	-	0	60	0	24	10	2
P-0041409-T05-IM7	SOMATIC	TET2	TET2	22	4	48672816	106156620	Promoter of MIR3201(+):3Kb from tx start	Exon 3 of TET2(+)	GRCh37	TRANSLOCATION	TET2 (NM_001127208) rearrangement: t(4;22)(q24;q13.32)(chr4:g.106156620::chr22:g.48672816)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	72	10	47
P-0051302-T04-IM7	SOMATIC	BRCA2	BRCA2	13	13	32914242	32915926	Exon 11 of BRCA2(+)	Intron of BRCA2(+):593bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.5750_c.6841+593del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1684	55	0	26	10	29
P-0059163-T04-IM7	SOMATIC	LIN9	PARP1	1	1	226487212	226556169	Intron of LIN9(-):2Kb after exon 2	Intron of PARP1(-):147bp before exon 16	GRCh37	DUPLICATION	LIN9 (NM_173083) - PARP1 (NM_001618) rearrangement: c.112+1662:LIN9_c.2155-147:PARP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LIN9:PARP1}	68957	60	0	5	4	5
P-0059163-T04-IM7	SOMATIC	AXIN2	AXIN2	17	17	63537754	63552097	Intron of AXIN2(-):79bp before exon 4	Intron of AXIN2(-):2Kb after exon 2	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.815+1827_c.957-79del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	14343	60	0	8	10	9
P-0059163-T04-IM7	SOMATIC	XPO1	XPO1	2	2	61742774	61753559	Intron of XPO1(-):7Kb after exon 4	Exon 3 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.224_c.301+6972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10785	60	0	14	10	14
P-0059163-T04-IM7	SOMATIC	TSC1	TSC1	9	1	135779292	56602679	Intron of TSC1(-):88bp before exon 17	IGR: 358Kb before PPAP2B(-)	GRCh37	TRANSLOCATION	TSC1 (NM_000368) rearrangement: t(1;9)(p32.2;q34.13)(chr1:g.56602679::chr9:g.135779292)	PRECISE		MANUAL_OK	3to3	-	0	60	0	8	6	7
P-0064514-T02-IM7	SOMATIC	ERCC2	ERCC2	19	2	45858998	190252148	Intron of ERCC2(-):12bp before exon 16	IGR: 54Kb before WDR75(+)	GRCh37	TRANSLOCATION	ERCC2 (NM_000400) rearrangement: t(2;19)(q32.2;q13.32)(chr2:g.190252148::chr19:g.45858998)	PRECISE		MANUAL_OK	3to5	-	0	60	0	9	10	9
P-0065277-T01-IM7	SOMATIC	ARID1A	ARID1A	2	1	180396469	27100115	Intron of ZNF385B(-):13Kb after exon 2	Exon 16 of ARID1A(+)	GRCh37	TRANSLOCATION	ARID1A (NM_006015) rearrangement: t(1;2)(p36.11;q31.2)(chr1:g.27100115::chr2:g.180396469)	IMPPRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	31	0	42
P-0065696-T02-IM7	SOMATIC	FOXA1	FOXA1	14	14	38062006	38092832	Intron of FOXA1(-):90bp before exon 2	IGR: 34Kb before FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.73-90:FOXA1_chr14:g.38092832del	PRECISE		MANUAL_OK	3to5	-	30826	60	0	3	5	3
P-0065728-T02-IM7	SOMATIC	COPS3	FLCN	17	17	17129308	17150733	Intron of FLCN(-):181bp after exon 5	Intron of COPS3(-):60bp after exon 11	GRCh37	DELETION	COPS3 (NM_003653) - FLCN (NM_144997) rearrangement: c.1218+61:COPS3_c.396+182:FLCNdel	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {COPS3:FLCN}	21425	60	0	6	0	6
P-0065728-T02-IM7	SOMATIC	PPM1D	PPM1D	17	17	37974943	58734125	Intron of IKZF3(-):11Kb after exon 3	Exon 5 of PPM1D(+)	GRCh37	DELETION	PPM1D (NM_003620) rearrangement: c.1183:PPM1D_chr17:g.37974943del	PRECISE		MANUAL_OK	3to5	-	20759182	58	0	9	10	9
P-0066179-T01-IM7	SOMATIC	BCL2L11	BCL2L11	2	2	111881366	115504135	Exon 2 of BCL2L11(+)	Intron of DPP10(+):304Kb after exon 1	GRCh37	INVERSION	BCL2L11 (NM_138621) rearrangement: c.44:BCL2L11_chr2:g.115504135inv	PRECISE		MANUAL_OK	5to5	-	3622769	60	0	6	10	6
P-0066190-T01-IM7	SOMATIC	IRF4	IRF4	6	4	395194	183857640	Intron of IRF4(+):187bp after exon 3	IGR: 46Kb before DCTD(-)	GRCh37	TRANSLOCATION	IRF4 (NM_002460) rearrangement: t(4;6)(q35.1;p25.3)(chr4:g.183857640::chr6:g.395194)	PRECISE		MANUAL_OK	3to3	-	0	60	0	69	10	69
P-0066200-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968975	21971464	Intron of CDKN2A(-):734bp before exon 3	Intron of CDKN2A(-):257bp before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-734:CDKN2A_c.194-257:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2489	60	0	14	10	14
P-0066216-T01-IM7	SOMATIC	CCND2	CCND2	12	12	4388112	15394361	Intron of CCND2(+):27bp after exon 3	IGR: 81Kb before PTPRO(+)	GRCh37	INVERSION	CCND2 (NM_001759) rearrangement: c.571+27:CCND2_chr12:g.15394361inv	PRECISE		MANUAL_OK	3to3	-	11006249	60	0	19	10	19
P-0066221-T01-IM7	SOMATIC	MSH6	MSH6	2	2	48020188	48033217	Intron of MSH6(+):2Kb after exon 2	Intron of MSH6(+):125bp before exon 8	GRCh37	DELETION	MSH6 (NM_000179) rearrangement: c.457+1926_c.3647-126del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	13029	60	0	19	0	20
P-0066223-T01-IM7	SOMATIC	SOS1	PRKCE	2	2	39285949	46285364	Intron of SOS1(-):4bp before exon 3	Intron of PRKCE(+):28Kb before exon 11	GRCh37	INVERSION	SOS1 (NM_005633) - PRKCE (NM_005400) rearrangement: c.214-4:SOS1_c.1438-27983:PRKCEinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {SOS1:PRKCE}	6999415	60	0	9	10	9
P-0066224-T01-IM7	SOMATIC	NF1	NF1	17	3	29588926	177315543	Intron of NF1(+):51bp after exon 34	5-UTR of LINC00578(+):155Kb before coding start	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(3;17)(q26.32;q11.2)(chr3:g.177315543::chr17:g.29588926)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NF1:LINC00578}	0	60	0	15	10	15
P-0023375-T02-IM7	SOMATIC	EML4	ALK	2	2	29447854	42525653	Intron of ALK(-):472bp after exon 19	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2728:EML4_c.3172+473:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13077799	60	0	29	10	29
P-0045507-T03-IM7	SOMATIC	FGFR3	TACC3	4	4	1741016	1808733	Intron of TACC3(+):412bp before exon 11	Intron of FGFR3(+):72bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+72:FGFR3_c.1942-413:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67717	60	0	110	10	118
P-0050403-T04-IM7	SOMATIC	KRT20	ERBB2	17	17	37866768	39034368	Intron of ERBB2(+):34bp after exon 7	Intron of KRT20(-):28bp after exon 6	GRCh37	INVERSION	KRT20 (NM_019010) - ERBB2 (NM_004448) fusion: c.1139+29:KRT20_c.901+34:ERBB2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {KRT20:ERBB2}	1167600	60	0	546	0	932
P-0050403-T04-IM7	SOMATIC	ERBB2	ERBB2	17	17	37883751	37897557	Exon 26 of ERBB2(+)	Intron of GRB7(+):947bp before exon 2	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3363:ERBB2_chr17:g.37897557del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ERBB2:GRB7}	13806	60	0	154	0	1662
P-0054342-T03-IM7	SOMATIC	GSK3B	GSK3B	3	3	119681744	119812069	Intron of GSK3B(-):16Kb before exon 3	Intron of GSK3B(-):124bp after exon 1	GRCh37	INVERSION	GSK3B (NM_002093) rearrangement: c.88+125_c.283-15546inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	130325	60	0	16	10	18
P-0057072-T03-IM7	SOMATIC	KIF5B	RET	10	10	32314848	43611106	Intron of KIF5B(-):3Kb after exon 15	Intron of RET(+):922bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+2508:KIF5B_c.2136+922:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11296258	60	0	8	10	11
P-0060472-T02-IM7	SOMATIC	KEAP1	KEAP1	19	19	10602319	10603791	Exon 3 of KEAP1(-)	Intron of KEAP1(-):853bp before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-853_c.1259del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1472	48	0	15	10	16
P-0060748-T03-IM7	SOMATIC	KIF5B	RET	10	10	32314268	43611527	Intron of KIF5B(-):2Kb before exon 16	Intron of RET(+):504bp before exon 12	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1726-2304:KIF5B_c.2137-505:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11297259	60	0	39	10	45
P-0063882-T05-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120465516	145277242	Intron of NOTCH2(-):115bp before exon 27	Intron of NBPF20(+):36Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.4860-115:NOTCH2_chr1:g.145277242inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NBPF20:NOTCH2}	24811726	28	1	639	10	682
P-0065006-T02-IM7	SOMATIC	MDC1	MDC1	6	6	30411379	30682820	IGR: 46Kb before HLA-E(+)	Exon 2 of MDC1(-)	GRCh37	INVERSION	MDC1 (NM_014641) rearrangement: c.133:MDC1_chr6:g.30411379inv	PRECISE		MANUAL_OK	5to5	-	271441	60	0	33	10	43
P-0065499-T02-IM7	SOMATIC	SPOP	SPOP	17	17	47693932	47696389	Intron of SPOP(-):2Kb after exon 5	Exon 5 of SPOP(-)	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: c.434_c.480+2411inv	PRECISE		MANUAL_OK	3to3	-	2457	60	0	38	10	37
P-0065700-T02-IM7	SOMATIC	SLX4	SLX4	16	16	3650959	7516832	Intron of SLX4(-):20bp after exon 5	Intron of RBFOX1(+):51Kb before exon 3	GRCh37	DELETION	SLX4 (NM_032444) rearrangement: c.1163+21:SLX4_chr16:g.7516832del	PRECISE		MANUAL_OK	3to5	-	3865873	60	0	14	10	15
P-0065945-T03-IM7	SOMATIC	EWSR1	FLI1	22	11	29684998	128656142	Intron of EWSR1(+):223bp after exon 9	Intron of FLI1(+):4Kb after exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128656142::chr22:g.29684998)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	40	10	42
P-0066235-T01-IM7	SOMATIC	ID3	ID3	1	1	2313268	23885870	Intron of MORN1(-):3Kb after exon 6	Exon 1 of ID3(-)	GRCh37	INVERSION	ID3 (NM_002167) rearrangement: c.48:ID3_chr1:g.2313268inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	21572602	60	0	5	10	6
P-0066239-T01-IM7	SOMATIC	LMNA	NTRK1	1	1	156106759	156845170	Exon 9 of LMNA(+)	Intron of NTRK1(+):141bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) fusion: c.1428:LMNA_c.1355-142:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {LMNA:NTRK1}	738411	60	0	20	10	21
P-0066245-T01-IM7	SOMATIC	TP53	TP53	17	17	7578948	7580575	Intron of TP53(-):363bp after exon 4	5-UTR of TP53(-):8Kb before coding start	GRCh37	DUPLICATION	TP53 (NM_000546) rearrangement: c.375+364:TP53_chr17:g.7580575dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	1627	60	0	31	10	32
P-0066247-T01-IM7	SOMATIC	KREMEN1	EWSR1	22	22	29542498	29686042	Intron of KREMEN1(+):4Kb after exon 9	Intron of EWSR1(+):1Kb after exon 9	GRCh37	DELETION	KREMEN1 (NM_032045) - EWSR1 (NM_013986) rearrangement: c.1416+4410:KREMEN1_c.992+1267:EWSR1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {KREMEN1:EWSR1}	143544	60	0	5	6	5
P-0066248-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10286287	10979373	Exon 6 of DNMT1(-)	Promoter of CARM1(+):3Kb from tx start	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.529:DNMT1_chr19:g.10979373del	PRECISE		MANUAL_OK	3to5	-	693086	60	0	20	10	21
P-0066255-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39857386	42875043	Intron of ERG(-):13Kb after exon 1	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4834:TMPRSS2_c.18+12901:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3017657	60	0	3	10	3
P-0066255-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140482700	140502194	Intron of BRAF(-):120bp after exon 10	Intron of BRAF(-):834bp before exon 6	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.712-834_c.1314+121del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	19494	60	0	41	10	45
P-0066256-T01-IM7	SOMATIC	EP300	EP300	22	9	41533653	131730975	Intron of EP300(+):3bp before exon 8	Exon 9 of NUP188(+)	GRCh37	TRANSLOCATION	EP300 (NM_001429) rearrangement: t(9;22)(q34.11;q13.2)(chr9:g.131730975::chr22:g.41533653)	PRECISE		MANUAL_OK	5to5	-	0	60	0	77	10	107
P-0066272-T01-IM7	SOMATIC	XPO1	USP34	2	2	61697824	61711216	Exon 1 of USP34(-)	Exon 21 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.2533:XPO1_c.4:USP34del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPO1:USP34}	13392	60	0	12	10	12
P-0066287-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55254364	55266722	Intron of EGFR(+):5Kb before exon 21	Intron of EGFR(+):166bp after exon 23	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2470-5048_c.2848+166del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	12358	60	0	31	10	35
P-0066288-T01-IM7	SOMATIC	CCND3	CCND3	6	6	41908019	41976114	Intron of CCND3(-):88bp after exon 2	5-UTR of CCND3(-):72Kb before coding start	GRCh37	INVERSION	CCND3 (NM_001760) rearrangement: c.414+89:CCND3_chr6:g.41976114inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	68095	60	0	6	0	6
P-0066305-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57488138	57493237	Intron of NAB2(+):256bp before exon 7	Intron of STAT6(-):14bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-257:NAB2_c.1745-14:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5099	60	0	63	10	63
P-0066305-T01-IM7	SOMATIC	RAD52	RAD52	19	12	3879831	1023199	Promoter of ATCAY(+):786bp from tx start	Exon 11 of RAD52(-)	GRCh37	TRANSLOCATION	RAD52 (NM_134424) rearrangement: t(12;19)(p13.33;p13.3)(chr12:g.1023199::chr19:g.3879831)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATCAY:RAD52}	0	54	0	15	10	15
P-0063502-T01-IM7	SOMATIC	RET	CTNNA1	10	5	43622038	138223827	Exon 19 of RET(+)	Intron of CTNNA1(+):496bp after exon 9	GRCh37	TRANSLOCATION	RET (NM_020975) - CTNNA1 (NM_001903) fusion: t(5;10)(q31.2;q11.21)(chr5:g.138223827::chr10:g.43622038)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RET:CTNNA1}	0	60	0	23	10	23
P-0065350-T02-IM7	SOMATIC	PAK1	CTNND1	11	11	57582028	77066625	Intron of CTNND1(+):183bp after exon 18	Intron of PAK1(-):87bp after exon 7	GRCh37	INVERSION	PAK1 (NM_002576) - CTNND1 (NM_001085458) rearrangement: c.772+88:PAK1_c.2701+183:CTNND1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PAK1:CTNND1}	19484597	60	0	6	0	6
P-0066272-T02-IM7	SOMATIC	XPO1	USP34	2	2	61697824	61711216	Exon 1 of USP34(-)	Exon 21 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) - USP34 (NM_014709) rearrangement: c.2533:XPO1_c.4:USP34del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPO1:USP34}	13392	60	0	18	10	18
P-0066306-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11145775	11162264	Exon 29 of SMARCA4(+)	Intron of SMARCA4(+):7Kb before exon 32	GRCh37	DUPLICATION	SMARCA4 (NM_003072) rearrangement: c.4137_c.4425-6667dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	16489	53	0	3	10	3
P-0004226-T09-IM7	SOMATIC	INPPL1	INPPL1	11	11	71942321	72366522	Intron of INPPL1(+):88bp after exon 12	Intron of PDE2A(-):13Kb before exon 2	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.1497+88:INPPL1_chr11:g.72366522del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	424201	60	0	76	10	77
P-0012485-T02-IM7	SOMATIC	BRCA2	BRCA2	13	13	32968217	32969171	Intron of BRCA2(+):608bp before exon 25	Intron of BRCA2(+):101bp after exon 25	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.9257-609_c.9501+101inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	954	60	0	3	5	2
P-0017978-T04-IM7	SOMATIC	EML4	ALK	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+7306:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052568	51	0	19	10	21
P-0026942-T03-IM7	SOMATIC	TCF7L2	TCF7L2	10	4	114925730	72389	Exon 14 of TCF7L2(+)	Intron of ZNF718(+):12Kb after exon 4	GRCh37	TRANSLOCATION	TCF7L2 (NM_001146274) rearrangement: t(4;10)(p16.3;q25.3)(chr4:g.72389::chr10:g.114925730)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TCF7L2:ZNF718}	0	60	0	13	0	13
P-0032151-T05-IM7	SOMATIC	NOTCH3	AKAP8L	19	19	15303237	15500978	Exon 3 of NOTCH3(-)	Intron of AKAP8L(-):7Kb after exon 12	GRCh37	DUPLICATION	NOTCH3 (NM_000435) - AKAP8L (NM_014371) rearrangement: c.291:NOTCH3_c.1536+6983:AKAP8Ldup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NOTCH3:AKAP8L}	197741	60	0	19	10	20
P-0033580-T02-IM7	SOMATIC	NF1	NF1	17	17	29431547	39907208	Intron of NF1(+):9Kb after exon 1	IGR: 4Kb before JUP(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.60+9160:NF1_chr17:g.39907208del	IMPPRECISE		MANUAL_OK	3to5	-	10475661	60	0	5	0	5
P-0062355-T03-IM7	SOMATIC	EWSR1	ERG	22	21	29683517	39760652	Intron of EWSR1(+):394bp after exon 8	Intron of ERG(-):2Kb after exon 9	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39760652::chr22:g.29683517)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	53	0	22	10	22
P-0065607-T02-IM7	SOMATIC	TP53	TP53	17	17	7568695	7576402	IGR: 3Kb before TP53(-)	Intron of TP53(-):450bp after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+451:TP53_chr17:g.7568695del	IMPPRECISE		MANUAL_OK	3to5	-	7707	60	0	16	0	19
P-0065607-T02-IM7	SOMATIC	NF1	NF1	17	17	29661601	37734980	Intron of NF1(+):254bp before exon 39	IGR: 25Kb before NEUROD2(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5813-255:NF1_chr17:g.37734980del	PRECISE		MANUAL_OK	3to5	-	8073379	60	0	11	10	11
P-0065818-T02-IM7	SOMATIC	NF2	EWSR1	22	22	29691985	30077174	Intron of EWSR1(+):243bp before exon 13	Intron of NF2(+):253bp before exon 15	GRCh37	DUPLICATION	NF2 (NM_000268) - EWSR1 (NM_013986) rearrangement: c.1575-254:NF2_c.1180-244:EWSR1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {NF2:EWSR1}	385189	57	0	12	10	13
P-0066217-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39822667	42875326	Intron of ERG(-):5Kb before exon 2	Intron of TMPRSS2(-):5Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4551:TMPRSS2_c.19-5123:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3052659	60	0	28	10	28
P-0066230-T02-IM7	SOMATIC	BRCA1	LSM12	17	17	41228500	42135331	Intron of BRCA1(-):4bp after exon 13	Intron of LSM12(-):6Kb after exon 3	GRCh37	DUPLICATION	BRCA1 (NM_007294) - LSM12 (NM_152344) rearrangement: c.4484+5:BRCA1_c.258+5838:LSM12dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BRCA1:LSM12}	906831	60	0	16	10	17
P-0066230-T02-IM7	SOMATIC	AGO2	TRAPPC9	8	8	141393485	141569605	Intron of TRAPPC9(-):12Kb before exon 8	Exon 6 of AGO2(-)	GRCh37	DELETION	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.679:AGO2_c.1429-12206:TRAPPC9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {AGO2:TRAPPC9}	176120	38	0	15	10	24
P-0066293-T02-IM7	SOMATIC	ARID2	ARID2	12	12	46122785	46123700	Promoter of ARID2(+):834bp from tx start	Exon 1 of ARID2(+)	GRCh37	INVERSION	ARID2 (NM_152641) rearrangement: c.81:ARID2_chr12:g.46122785inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	915	60	0	4	8	4
P-0066293-T02-IM7	SOMATIC	ERBB2	ERBB2	17	17	37882933	37885243	Intron of ERBB2(+):21bp after exon 24	Promoter of ERBB2(+):29Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.2970+21:ERBB2_chr17:g.37885243del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2310	60	0	38	10	40
P-0066301-T02-IM7	SOMATIC	CDH1	CDH1	16	16	68771431	68818923	Intron of CDH1(+):65bp after exon 1	Intron of CDH1(+):17Kb before exon 3	GRCh37	INVERSION	CDH1 (NM_004360) rearrangement: c.48+65_c.164-16650inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	47492	60	0	34	10	34
P-0066327-T01-IM7	SOMATIC	PAX8	PAX8	2	2	113974036	113978607	3-UTR of PAX8(-):2Kb after coding stop	Intron of PAX8(-):852bp before exon 11	GRCh37	DELETION	PAX8 (NM_003466) rearrangement: c.1190-852:PAX8_chr2:g.113974036del	PRECISE		MANUAL_OK	3to5	-	4571	60	0	31	10	34
P-0066328-T01-IM7	SOMATIC	PRKCI	PRKCI	3	3	170002480	172800731	Intron of PRKCI(+):96bp after exon 12	Intron of SPATA16(-):34Kb before exon 3	GRCh37	DELETION	PRKCI (NM_002740) rearrangement: c.1203+96:PRKCI_chr3:g.172800731del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	2798251	60	0	6	10	8
P-0066329-T01-IM7	SOMATIC	PDPK1	PDPK1	16	16	2647181	55966403	Exon 13 of PDPK1(+)	Intron of CES5A(-):17Kb after exon 2	GRCh37	DELETION	PDPK1 (NM_002613) rearrangement: c.1459:PDPK1_chr16:g.55966403del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	53319222	60	0	50	10	57
P-0066329-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55112370	55221940	Intron of EGFR(+):25Kb after exon 1	Intron of EGFR(+):95bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+25312_c.889+95del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	109570	60	0	345	0	4298
P-0066331-T01-IM7	SOMATIC	DNAJB1	DNAJB1	19	19	14628390	14629236	Intron of DNAJB1(-):532bp before exon 2	5-UTR of DNAJB1(-):2Kb before coding start	GRCh37	INVERSION	DNAJB1 (NM_006145) rearrangement: c.212-532:DNAJB1_chr19:g.14629236inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	846	60	0	3	10	6
P-0066341-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140481360	140482400	Intron of BRAF(-):15bp after exon 11	Intron of BRAF(-):420bp after exon 10	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.1314+421_c.1432+16inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	1040	32	0	3	0	3
P-0066345-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123184236	126184145	Intron of STAG2(+):77bp after exon 11	IGR: 230Kb before PRR32(+)	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1017+77:STAG2_chrX:g.126184145del	IMPPRECISE		MANUAL_OK	3to5	-	2999909	60	0	5	0	5
P-0066346-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71015141	71045213	Exon 16 of FOXP1(-)	Intron of FOXP1(-):5Kb after exon 9	GRCh37	DUPLICATION	FOXP1 (NM_001244814) rearrangement: c.1062+4910_c.1789dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	30072	60	0	23	10	23
P-0066387-T01-IM7	SOMATIC	ATM	ATM	11	11	108100165	129214636	Intron of ATM(+):115bp after exon 4	IGR: 31Kb before BARX2(+)	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.331+115:ATM_chr11:g.129214636inv	IMPPRECISE		MANUAL_OK	3to3	-	21114471	60	0	5	0	6
P-0066396-T01-IM7	SOMATIC	BRAF	BRAF	16	7	66401207	140486093	5-UTR of CDH5(+):12Kb before coding start	Intron of BRAF(-):1Kb after exon 9	GRCh37	TRANSLOCATION	BRAF (NM_004333) rearrangement: t(7;16)(q34;q21)(chr7:g.140486093::chr16:g.66401207)	PRECISE		MANUAL_OK	5to3	-	0	60	0	45	10	46
P-0066396-T01-IM7	SOMATIC	LATS1	LATS1	6	6	149997531	150000518	Intron of LATS1(-):29bp before exon 7	Intron of LATS1(-):492bp after exon 5	GRCh37	DELETION	LATS1 (NM_004690) rearrangement: c.2593+493_c.2777-29del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2987	44	0	18	10	18
P-0066398-T02-IM7	SOMATIC	TFE3	NONO	X	X	48893119	70518342	Intron of TFE3(-):1Kb before exon 6	Exon 8 of NONO(+)	GRCh37	INVERSION	TFE3 (NM_006521) - NONO (NM_001145409) rearrangement: c.886-1353:TFE3_c.1155:NONOinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TFE3:NONO}	21625223	60	0	20	10	20
P-0066401-T01-IM7	SOMATIC	BLM	BLM	15	15	91354382	91386801	Intron of BLM(+):52bp before exon 21	IGR: 25Kb before FURIN(+)	GRCh37	DUPLICATION	BLM (NM_000057) rearrangement: c.3875-53:BLM_chr15:g.91386801dup	PRECISE		MANUAL_OK	5to3	-	32419	60	0	28	10	28
P-0066401-T01-IM7	SOMATIC	ERBB2	ERBB2	17	14	37866740	59641337	Intron of ERBB2(+):6bp after exon 7	IGR: 14Kb before DAAM1(+)	GRCh37	TRANSLOCATION	ERBB2 (NM_004448) rearrangement: t(14;17)(q23.1;q12)(chr14:g.59641337::chr17:g.37866740)	PRECISE		MANUAL_OK	3to3	-	0	60	0	46	10	45
P-0066401-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1740494	1808930	Intron of TACC3(+):934bp before exon 11	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2362:FGFR3_c.1942-935:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	68436	60	0	16	10	16
P-0066432-T01-IM7	SOMATIC	SNRNP70	MET	19	7	49597675	116411632	Intron of SNRNP70(+):4Kb after exon 4	Exon 13 of MET(+)	GRCh37	TRANSLOCATION	SNRNP70 (NM_003089) - MET (NM_000245) fusion: t(7;19)(q31.2;q13.33)(chr7:g.116411632::chr19:g.49597675)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SNRNP70:MET}	0	60	0	6	0	6
P-0066435-T01-IM7	SOMATIC	SMARCA4	LDLR	19	19	11150186	11225334	Exon 30 of SMARCA4(+)	Intron of LDLR(+):896bp after exon 10	GRCh37	DELETION	SMARCA4 (NM_003072) - LDLR (NM_000527) rearrangement: c.4171-1797:SMARCA4_c.1586+896:LDLRdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SMARCA4:LDLR}	75148	60	0	10	10	10
P-0066455-T01-IM7	SOMATIC	EWSR1	EWSR1	22	22	19633108	29688445	IGR: 69Kb before SEPT5(+)	Intron of EWSR1(+):31bp before exon 12	GRCh37	DELETION	EWSR1 (NM_013986) rearrangement: c.1061-32:EWSR1_chr22:g.19633108del	PRECISE		MANUAL_OK	3to5	-	10055337	59	0	10	10	11
P-0066472-T01-IM7	SOMATIC	MAX	MAX	14	14	65534208	65543493	Intron of MAX(-):26Kb after exon 2	Intron of MAX(-):112bp before exon 5	GRCh37	DUPLICATION	MAX (NM_002382) rearrangement: c.296-112:MAX_chr14:g.65534208dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	9285	60	0	33	10	36
P-0066530-T01-IM7	SOMATIC	RB1	RB1	13	13	48928464	48942754	Intron of RB1(+):5Kb after exon 6	Intron of RB1(+):14bp after exon 11	GRCh37	DELETION	RB1 (NM_000321) rearrangement: c.607+5305_c.1127+14del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	14290	45	0	13	0	13
P-0066532-T01-IM7	SOMATIC	ERBB2	ERBB2	17	17	37883849	37885595	Intron of ERBB2(+):49bp after exon 26	Promoter of ERBB2(+):29Kb from tx start	GRCh37	DELETION	ERBB2 (NM_004448) rearrangement: c.3412+49:ERBB2_chr17:g.37885595del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	1746	60	0	4	6	4
P-0066534-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57488034	57493193	Intron of NAB2(+):360bp before exon 7	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1469-361:NAB2_c.1775:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5159	60	0	41	10	41
P-0066249-T03-IM7	SOMATIC	FGFR1	FGFR1	8	8	36502323	38285782	IGR: 140Kb before KCNU1(+)	Intron of FGFR1(-):87bp after exon 5	GRCh37	INVERSION	FGFR1 (NM_001174067) rearrangement: c.541+88:FGFR1_chr8:g.36502323inv	IMPPRECISE		MANUAL_OK	5to5	-	1783459	60	0	5	0	5
P-0066478-T01-IM7	SOMATIC	CDKN2B	CDKN2B	9	9	21888191	22006152	IGR: 79Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2B(-)	GRCh37	DELETION	CDKN2B (NM_004936) rearrangement: c.251:CDKN2B_chr9:g.21888191del	PRECISE		MANUAL_OK	3to5	-	117961	60	0	215	10	269
P-0066479-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55201820	55222179	Intron of EGFR(+):8Kb before exon 2	Intron of EGFR(+):334bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-8159_c.889+334del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	20359	60	0	462	10	2763
P-0066481-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	6	42869384	19400265	Intron of TMPRSS2(-):661bp after exon 2	IGR: 331Kb before LOC101928519(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(6;21)(p22.3;q22.3)(chr6:g.19400265::chr21:g.42869384)	PRECISE		MANUAL_OK	5to3	-	0	60	0	29	10	28
P-0066481-T01-IM7	SOMATIC	AGO2	TRAPPC9	8	8	141377115	141557415	Intron of TRAPPC9(-):4Kb after exon 8	Intron of AGO2(-):151bp after exon 13	GRCh37	DELETION	AGO2 (NM_012154) - TRAPPC9 (NM_031466) rearrangement: c.1748+152:AGO2_c.1645+3948:TRAPPC9del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {AGO2:TRAPPC9}	180300	60	0	11	10	11
P-0066420-T01-IM7	SOMATIC	BCAS3	PPM1D	17	17	58710549	59033550	Intron of PPM1D(+):664bp before exon 3	Intron of BCAS3(+):9Kb after exon 14	GRCh37	DUPLICATION	BCAS3 (NM_001099432) - PPM1D (NM_003620) rearrangement: c.1221+8837:BCAS3_c.702-665:PPM1Ddup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BCAS3:PPM1D}	323001	60	0	7	4	7
P-0065087-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52614149	52621418	Intron of PBRM1(-):934bp before exon 22	Exon 20 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.2999_c.3313-934del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	7269	60	0	30	10	32
P-0066303-T02-IM7	SOMATIC	TP53	TP53	17	17	7578395	7580402	Exon 5 of TP53(-)	5-UTR of TP53(-):7Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.535:TP53_chr17:g.7580402del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2007	36	0	6	10	7
P-0066350-T01-IM7	SOMATIC	SNAP23	MGA	15	15	42003490	42811587	Exon 8 of MGA(+)	Intron of SNAP23(+):4Kb after exon 5	GRCh37	DUPLICATION	SNAP23 (NM_003825) - MGA (NM_001164273) rearrangement: c.266+4035:SNAP23_c.3027:MGAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SNAP23:MGA}	808097	51	0	25	10	31
P-0066350-T01-IM7	SOMATIC	RPTOR	RPTOR	17	1	78867535	3697477	Exon 20 of RPTOR(+)	3-UTR of LRRC47(-):174bp after coding stop	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(1;17)(p36.32;q25.3)(chr1:g.3697477::chr17:g.78867535)	PRECISE		MANUAL_OK	5to3	-	0	33	0	19	10	22
P-0066350-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39969858	42875946	3-UTR of ERG(-):64Kb after coding stop	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) rearrangement: c.55+3931:TMPRSS2_c.-149-12989:ERGdel	PRECISE		MANUAL_OK	3to5	-	2906088	60	0	62	10	67
P-0066500-T01-IM7	SOMATIC	NF2	NF2	22	14	30061079	81613520	Intron of NF2(+):26bp after exon 9	Promoter of TSHR(+):192Kb from tx start	GRCh37	TRANSLOCATION	NF2 (NM_000268) rearrangement: t(14;22)(q31.1;q12.2)(chr14:g.81613520::chr22:g.30061079)	PRECISE		MANUAL_OK	5to5	-	0	60	0	5	10	5
P-0066609-T01-IM7	SOMATIC	ERBB4	ERBB4	2	2	212543837	213038702	Exon 13 of ERBB4(-)	Intron of ERBB4(-):49Kb before exon 2	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.83-49074_c.1562dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	494865	60	0	10	0	10
P-0066617-T01-IM7	SOMATIC	TEK	TEK	9	9	15421439	27172433	Promoter of SNAPC3(+):1Kb from tx start	Intron of TEK(+):180bp before exon 5	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.629-181:TEK_chr9:g.15421439del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SNAPC3:TEK}	11750994	60	0	8	10	9
P-0066623-T01-IM7	SOMATIC	TP53	TP53	17	17	7570824	7579287	Promoter of TP53(-):895bp from tx start	Intron of TP53(-):24bp after exon 4	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.375+25:TP53_chr17:g.7570824del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	8463	60	0	59	10	59
P-0066629-T01-IM7	SOMATIC	TMPRSS2	ZNF827	21	4	42868560	146791927	Intron of TMPRSS2(-):1Kb after exon 2	Intron of ZNF827(-):297bp before exon 5	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) - ZNF827 (NM_178835) rearrangement: t(4;21)(q31.21;q22.3)(chr4:g.146791927::chr21:g.42868560)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMPRSS2:ZNF827}	0	60	0	60	10	62
P-0066703-T01-IM7	SOMATIC	FUBP1	FUBP1	1	1	78147394	78430865	5-UTR of ZZZ3(-):116Kb before coding start	Exon 8 of FUBP1(-)	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.524:FUBP1_chr1:g.78147394del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {FUBP1:ZZZ3}	283471	60	0	5	10	6
P-0066705-T01-IM7	SOMATIC	PRUNE	SETDB1	1	1	150935986	150989368	Intron of SETDB1(+):19bp before exon 20	Intron of PRUNE(+):919bp before exon 2	GRCh37	DUPLICATION	PRUNE (NM_021222) - SETDB1 (NM_001145415) rearrangement: c.40-920:PRUNE_c.3458-20:SETDB1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {PRUNE:SETDB1}	53382	56	0	8	10	8
P-0066705-T01-IM7	SOMATIC	ATR	ATR	3	3	142188960	142192420	Exon 37 of ATR(-)	Intron of ATR(-):3Kb before exon 37	GRCh37	DUPLICATION	ATR (NM_001184) rearrangement: c.6222-3395_c.6287dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	3460	55	0	6	10	7
P-0066705-T01-IM7	SOMATIC	PDGFRB	PDGFRB	5	5	149502737	149516371	Exon 15 of PDGFRB(-)	Intron of PDGFRB(-):199bp after exon 2	GRCh37	DUPLICATION	PDGFRB (NM_002609) rearrangement: c.40+200_c.2051dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	13634	60	0	15	10	16
P-0065492-T02-IM7	SOMATIC	SUFU	SUFU	10	10	104377522	105026944	Intron of SUFU(+):337bp after exon 10	IGR: 10Kb before INA(+)	GRCh37	DELETION	SUFU (NM_016169) rearrangement: c.1296+337:SUFU_chr10:g.105026944del	PRECISE		MANUAL_OK	3to5	-	649422	45	0	8	10	12
P-0065492-T02-IM7	SOMATIC	CIC	CIC	19	19	42799019	43304000	Exon 20 of CIC(+)	IGR: 22Kb before LOC100289650(+)	GRCh37	INVERSION	CIC (NM_015125) rearrangement: c.4503:CIC_chr19:g.43304000inv	PRECISE		MANUAL_OK	5to5	-	504981	60	0	19	10	35
P-0066278-T01-IM7	SOMATIC	BCL2L11	BCL2L11	22	2	32535417	111885201	IGR: 10Kb before C22orf42(-)	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	TRANSLOCATION	BCL2L11 (NM_138621) rearrangement: t(2;22)(q13;q12.3)(chr2:g.111885201::chr22:g.32535417)	PRECISE		MANUAL_OK	3to5	-	0	34	0	11	10	19
P-0066680-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	38926898	42877882	IGR: 70Kb before KCNJ6(-)	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.55+1995:TMPRSS2_chr21:g.38926898inv	PRECISE		MANUAL_OK	5to5	-	3950984	60	0	10	10	10
P-0066680-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47098326	73407327	Exon 15 of SETD2(-)	IGR: 24Kb before PDZRN3(-)	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement: c.6948:SETD2_chr3:g.73407327inv	PRECISE		MANUAL_OK	3to3	-	26309001	60	0	12	10	12
P-0066688-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	13	11123740	26204097	Exon 16 of SMARCA4(+)	Intron of ATP8A2(+):40Kb after exon 24	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(13;19)(q12.13;p13.2)(chr13:g.26204097::chr19:g.11123740)	PRECISE		MANUAL_OK	5to5	-	0	60	0	12	10	17
P-0066688-T01-IM7	SOMATIC	BRD4	BRD4	19	13	15380009	27179738	Intron of BRD4(-):156bp before exon 3	5-UTR of WASF3(+):37Kb before coding start	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(13;19)(q12.13;p13.12)(chr13:g.27179738::chr19:g.15380009)	PRECISE		MANUAL_OK	3to5	-	0	60	0	6	9	7
P-0066691-T01-IM7	SOMATIC	NFKBIA	NFKBIA	14	12	35871830	91170272	Exon 5 of NFKBIA(-)	IGR: 142Kb before LINC00615(+)	GRCh37	TRANSLOCATION	NFKBIA (NM_020529) rearrangement: t(12;14)(q21.33;q13.2)(chr12:g.91170272::chr14:g.35871830)	PRECISE		MANUAL_OK	3to5	-	0	25	0	30	10	37
P-0066691-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40108692	42873224	Promoter of LINC00114(-):2Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-3108:TMPRSS2_chr21:g.40108692del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:LINC00114}	2764532	54	0	15	10	19
P-0066695-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21968788	21972079	Intron of CDKN2A(-):547bp before exon 3	Intron of CDKN2A(-):872bp before exon 2	GRCh37	DELETION	CDKN2A (NM_000077) - CDKN2A (NM_058195) rearrangement: c.458-547:CDKN2A_c.194-872:CDKN2Adel	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	3291	60	0	13	10	13
P-0066698-T01-IM7	SOMATIC	RIT1	RIT1	1	1	155870088	155874052	3-UTR of RIT1(-):90bp after coding stop	Intron of RIT1(-):49bp after exon 5	GRCh37	INVERSION	RIT1 (NM_006912) rearrangement: c.429+50:RIT1_chr1:g.155870088inv	PRECISE		MANUAL_OK	5to5	-	3964	60	0	21	10	22
P-0066698-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3829016	3833007	Intron of CREBBP(-):198bp before exon 9	Intron of CREBBP(-):80bp before exon 6	GRCh37	DUPLICATION	CREBBP (NM_004380) rearrangement: c.1331-80_c.1824-198dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	3991	23	0	17	10	24
P-0066767-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	5	42874674	127508513	Intron of TMPRSS2(-):5Kb before exon 2	Intron of SLC12A2(+):1Kb after exon 19	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(5;21)(q23.3;q22.3)(chr5:g.127508513::chr21:g.42874674)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	13	10	13
P-0066769-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39874991	42869929	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):116bp after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099)  -ERG ()rearrangement: c.126+117:TMPRSS2_c.40-57447:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2994938	52	0	21	10	22
P-0013855-T03-IM7	SOMATIC	STAT3	STAT3	17	6	40485710	62618756	Exon 10 of STAT3(-)	Intron of KHDRBS2(-):7Kb before exon 5	GRCh37	TRANSLOCATION	STAT3 (NM_139276) rearrangement: t(6;17)(q11.1;q21.2)(chr6:g.62618756::chr17:g.40485710)	PRECISE		MANUAL_OK	3to3	-	0	60	0	21	10	21
P-0032721-T02-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67566961	67593193	Intron of PIK3R1(+):2Kb before exon 3	Intron of PIK3R1(+):46bp before exon 16	GRCh37	DELETION	PIK3R1 (NM_181523) rearrangement: c.335-2257_c.1986-47del	PRECISE		MANUAL_OK	3to5	Deletion of 13 exons : out of frame	26232	60	0	33	10	36
P-0037675-T02-IM7	SOMATIC	KDM5A	KDM5A	12	12	427282	507957	Exon 19 of KDM5A(-)	5-UTR of CCDC77(+):13Kb before coding start	GRCh37	DELETION	KDM5A (NM_001042603) rearrangement: c.2887:KDM5A_chr12:g.507957del	PRECISE		MANUAL_OK	3to5	-	80675	60	0	15	10	15
P-0046576-T02-IM7	SOMATIC	CASP8	CASP8	2	2	202136460	202138408	Intron of CASP8(+):116bp after exon 3	Intron of CASP8(+):743bp after exon 5	GRCh37	INVERSION	CASP8 (NM_001080125) rearrangement: c.588+116_c.772+743inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1948	60	0	19	0	18
P-0048471-T07-IM7	SOMATIC	RAF1	QKI	6	3	163948256	12645524	Intron of QKI(+):8Kb before exon 4	Intron of RAF1(-):110bp after exon 7	GRCh37	TRANSLOCATION	RAF1 (NM_002880) - QKI (NM_006775) rearrangement: t(3;6)(p25.2;q26)(chr3:g.12645524::chr6:g.163948256)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RAF1:QKI}	0	60	0	9	0	9
P-0064791-T02-IM7	SOMATIC	EWSR1	CREB3L1	22	11	29687339	46333902	Intron of EWSR1(+):214bp before exon 10	Exon 6 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333902::chr22:g.29687339)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	60	0	145	10	149
P-0065919-T02-IM7	SOMATIC	ARID1A	ARID1A	1	1	27099056	27507973	Exon 13 of ARID1A(+)	IGR: 53Kb before WDTC1(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.3472:ARID1A_chr1:g.27507973del	PRECISE		MANUAL_OK	3to5	-	408917	51	0	37	10	39
P-0066733-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39860642	42868387	Intron of ERG(-):10Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1659:TMPRSS2_c.18+9645:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3007745	60	0	62	10	64
P-0066737-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39885930	42868636	Intron of ERG(-):62Kb after exon 3	Intron of TMPRSS2(-):1Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.126+1410:TMPRSS2_c.39+61656:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2982706	60	0	37	10	40
P-0066738-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	21	12	44353164	18656210	IGR: 40Kb before NDUFV3(+)	Intron of PIK3C2G(+):4bp before exon 22	GRCh37	TRANSLOCATION	PIK3C2G (NM_004570) rearrangement: t(12;21)(p12.3;q22.3)(chr12:g.18656210::chr21:g.44353164)	PRECISE		MANUAL_OK	5to5	-	0	60	0	44	10	48
P-0066745-T01-IM7	SOMATIC	EPHA5	EPHA5	4	4	58014162	66370010	5-UTR of IGFBP7-AS1(+):57Kb before coding start	Intron of EPHA5(-):9Kb before exon 4	GRCh37	INVERSION	EPHA5 (NM_004439) rearrangement: c.911-8749:EPHA5_chr4:g.58014162inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {IGFBP7-AS1:EPHA5}	8355848	60	0	2	6	2
P-0066746-T01-IM7	SOMATIC	PRKAR1A	PRKAR1A	17	7	66526499	96014623	Exon 11 of PRKAR1A(+)	IGR: 96Kb before C7orf76(-)	GRCh37	TRANSLOCATION	PRKAR1A (NM_212471) rearrangement: t(7;17)(q21.3;q24.2)(chr7:g.96014623::chr17:g.66526499)	PRECISE		MANUAL_OK	5to3	-	0	60	0	36	10	37
P-0066779-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114799883	114919820	Exon 5 of TCF7L2(+)	Intron of TCF7L2(+):557bp before exon 13	GRCh37	DELETION	TCF7L2 (NM_001146274) rearrangement: c.550_c.1319-558del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	119937	60	0	15	10	14
P-0066779-T01-IM7	SOMATIC	NF1	NF1	17	17	29557311	70845849	Exon 23 of NF1(+)	Exon 6 of SLC39A11(-)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.3024:NF1_chr17:g.70845849del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	41288538	60	0	40	10	41
P-0066848-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5258168	13655501	Intron of PTPRS(-):30bp before exon 8	IGR: 203Kb before CCDC130(+)	GRCh37	DELETION	PTPRS (NM_002850) rearrangement: c.596-30:PTPRS_chr19:g.13655501del	PRECISE		MANUAL_OK	3to5	-	8397333	60	0	45	10	49
P-0066848-T01-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15284895	15418605	Exon 25 of NOTCH3(-)	IGR: 46Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4720:NOTCH3_chr19:g.15418605del	PRECISE		MANUAL_OK	3to5	-	133710	60	0	4	7	4
P-0066853-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39865400	42868519	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.126+1527:TMPRSS2_c.18+4887:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3003119	60	0	50	10	50
P-0066858-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57487856	57493340	Intron of NAB2(+):475bp after exon 6	Intron of STAT6(-):117bp before exon 16	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+475:NAB2_c.1745-117:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {NAB2:STAT6}	5484	60	0	5	9	5
P-0066862-T01-IM7	SOMATIC	TEX14	RNF43	17	17	56441116	56635715	Intron of RNF43(-):155bp before exon 4	Intron of TEX14(-):504bp before exon 31	GRCh37	DELETION	TEX14 (NM_001201457) - RNF43 (NM_017763) rearrangement: c.4406-504:TEX14_c.376-155:RNF43del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TEX14:RNF43}	194599	60	0	25	10	26
P-0066862-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48591917	48687453	Exon 9 of SMAD4(+)	IGR: 13Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1080:SMAD4_chr18:g.48687453del	PRECISE		MANUAL_OK	3to5	-	95536	60	0	11	10	11
P-0004226-T10-IM7	SOMATIC	INPPL1	INPPL1	11	11	71942321	72366522	Intron of INPPL1(+):88bp after exon 12	Intron of PDE2A(-):13Kb before exon 2	GRCh37	DELETION	INPPL1 (NM_001567) rearrangement: c.1497+88:INPPL1_chr11:g.72366522del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	424201	60	0	10	10	10
P-0010841-T02-IM7	SOMATIC	CPNE8	ARID2	12	12	39264789	46240705	Intron of CPNE8(-):2Kb after exon 3	Exon 12 of ARID2(+)	GRCh37	INVERSION	CPNE8 (NM_153634) - ARID2 (NM_152641) rearrangement: c.186+2017:CPNE8_c.1565:ARID2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CPNE8:ARID2}	6975916	60	0	21	10	23
P-0042066-T03-IM7	SOMATIC	SPNS2	RPTOR	17	17	4415679	78811600	Intron of SPNS2(+):862bp before exon 2	Intron of RPTOR(+):121bp before exon 10	GRCh37	DELETION	SPNS2 (NM_001124758) - RPTOR (NM_020761) rearrangement: c.371-863:SPNS2_c.1137-122:RPTORdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {SPNS2:RPTOR}	74395921	60	0	7	5	7
P-0044647-T04-IM7	SOMATIC	FXR2	NF1	17	17	7495998	29540688	Intron of FXR2(-):13bp after exon 14	Intron of NF1(+):780bp before exon 13	GRCh37	INVERSION	FXR2 (NM_004860) - NF1 (NM_001042492) rearrangement: c.1729+14:FXR2_c.1393-781:NF1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {FXR2:NF1}	22044690	53	0	42	10	43
P-0066379-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29691291	128643844	Intron of EWSR1(+):937bp before exon 13	Intron of FLI1(+):964bp after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128643844::chr22:g.29691291)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	78	10	83
P-0066409-T02-IM7	SOMATIC	PRKD1	PRKD1	14	14	30191013	30194582	Intron of PRKD1(-):4Kb after exon 2	Intron of PRKD1(-):159bp after exon 2	GRCh37	DELETION	PRKD1 (NM_002742) rearrangement: c.403+160_c.403+3729del	PRECISE		MANUAL_OK	3to5	Deletion within intron	3569	60	0	25	10	26
P-0066568-T02-IM7	SOMATIC	EML4	ALK	2	2	29448072	42495299	Intron of ALK(-):254bp after exon 19	Intron of EML4(+):3Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+3428:EML4_c.3172+255:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13047227	60	0	34	10	34
P-0066835-T01-IM7	SOMATIC	TRIM24	BRAF	7	7	138257750	140490589	Intron of TRIM24(+):501bp before exon 12	Intron of BRAF(-):3Kb before exon 9	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.1879-502:TRIM24_c.1141-3205:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2232839	60	0	24	10	24
P-0066839-T01-IM7	SOMATIC	TP53	TP53	22	17	24674928	7579354	5-UTR of SPECC1L(+):23Kb before coding start	Exon 4 of TP53(-)	GRCh37	TRANSLOCATION	TP53 (NM_000546) rearrangement: t(17;22)(p13.1;q11.23)(chr17:g.7579354::chr22:g.24674928)	PRECISE		MANUAL_OK	5to3	-	0	60	0	17	10	31
P-0066843-T01-IM7	SOMATIC	FYN	LAMA2	6	6	112021357	129209544	Intron of FYN(-):484bp before exon 6	Intron of LAMA2(+):5Kb after exon 1	GRCh37	INVERSION	FYN (NM_153047) - LAMA2 (NM_000426) rearrangement: c.698-484:FYN_c.112+5042:LAMA2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FYN:LAMA2}	17188187	60	0	8	6	8
P-0066868-T01-IM7	SOMATIC	SLFN11	SLFN11	17	10	33687523	13272641	Intron of SLFN11(-):133bp before exon 4	Intron of UCMA(-):932bp before exon 4	GRCh37	TRANSLOCATION	SLFN11 (NM_001104589) rearrangement: t(17;10)(q12;p13)(chr17:g.33687523::chr10:g.13272641)	PRECISE		MANUAL_OK	3to3	-	0	60	0	16	10	16
P-0066870-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2127116	2129607	Intron of TSC2(+):482bp before exon 26	Exon 29 of TSC2(+)	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.2838-483_c.3334del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2491	60	0	21	10	23
P-0066930-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32914038	32915391	Exon 11 of BRCA2(+)	Intron of BRCA2(+):58bp after exon 11	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.5546_c.6841+58del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1353	60	0	8	10	8
P-0066983-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55208504	55221725	Intron of EGFR(+):1Kb before exon 2	Exon 7 of EGFR(+)	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-1475_c.769del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13221	60	0	355	10	397
P-0066983-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268480	55271281	Intron of EGFR(+):374bp after exon 24	Intron of EGFR(+):963bp after exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+374_c.3271+963del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2801	60	0	14	10	14
P-0066990-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89624578	135331185	Intron of PTEN(+):273bp after exon 1	IGR: 10Kb before CYP2E1(+)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.79+273:PTEN_chr10:g.135331185inv	PRECISE		MANUAL_OK	3to3	-	45706607	60	0	7	10	6
P-0066990-T01-IM7	SOMATIC	RTN3	PRKD1	14	11	30105422	63523769	Intron of PRKD1(-):73bp after exon 7	Intron of RTN3(+):127bp after exon 7	GRCh37	TRANSLOCATION	RTN3 (NM_201428) - PRKD1 (NM_002742) rearrangement: t(11;14)(q13.1;q12)(chr11:g.63523769::chr14:g.30105422)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RTN3:PRKD1}	0	60	0	12	9	12
P-0066796-T02-IM7	SOMATIC	AGO2	PTK2	8	8	141645211	141674658	Intron of AGO2(-):372bp after exon 1	Intron of PTK2(-):357bp after exon 31	GRCh37	DUPLICATION	AGO2 (NM_012154) - PTK2 (NM_005607) rearrangement: c.22+373:AGO2_c.3012+358:PTK2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {AGO2:PTK2}	29447	60	0	7	6	7
P-0066945-T01-IM7	SOMATIC	MTMR3	NF2	22	22	30070620	30420551	Intron of NF2(+):204bp before exon 13	Intron of MTMR3(+):1Kb before exon 19	GRCh37	DUPLICATION	MTMR3 (NM_021090) - NF2 (NM_000268) rearrangement: c.3426-1068:MTMR3_c.1341-205:NF2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {MTMR3:NF2}	349931	60	0	9	10	9
P-0066946-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76944534	77060375	Intron of ATRX(-):114bp before exon 7	IGR: 21Kb before MAGT1(-)	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.485-114:ATRX_chrX:g.77060375del	PRECISE		MANUAL_OK	3to5	-	115841	60	0	27	10	30
P-0010841-T03-IM7	SOMATIC	CPNE8	ARID2	12	12	39264789	46240705	Intron of CPNE8(-):2Kb after exon 3	Exon 12 of ARID2(+)	GRCh37	INVERSION	CPNE8 (NM_153634) - ARID2 (NM_152641) rearrangement: c.186+2017:CPNE8_c.1565:ARID2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CPNE8:ARID2}	6975916	60	0	5	10	5
P-0034906-T09-IM7	SOMATIC	KNSTRN	KNSTRN	15	15	40547873	40683799	5-UTR of PAK6(+):9Kb before coding start	Intron of KNSTRN(+):44bp after exon 7	GRCh37	DUPLICATION	KNSTRN (NM_033286) rearrangement: c.747+44:KNSTRN_chr15:g.40547873dup	PRECISE		MANUAL_OK	5to3	Transcript Fusion {KNSTRN:PAK6}	135926	60	0	11	10	12
P-0034906-T09-IM7	SOMATIC	ERBB2	ERBB2	17	17	37866550	78090552	Intron of ERBB2(+):42bp before exon 7	Intron of GAA(+):214bp before exon 16	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.760-43:ERBB2_chr17:g.78090552inv	PRECISE		MANUAL_OK	5to5	-	40224002	60	0	27	10	28
P-0066907-T01-IM7	SOMATIC	BRCA1	BRCA1	17	17	41267017	41277936	Intron of BRCA1(-):725bp after exon 3	Promoter of BRCA1(-):82Kb from tx start	GRCh37	INVERSION	BRCA1 (NM_007294) rearrangement: c.134+726:BRCA1_chr17:g.41277936inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	10919	60	0	7	10	8
P-0066908-T01-IM7	SOMATIC	NOTCH2	KCND3	1	1	112341335	120497762	Intron of KCND3(-):12Kb before exon 3	Exon 13 of NOTCH2(-)	GRCh37	DELETION	NOTCH2 (NM_024408) - KCND3 (NM_004980) rearrangement: c.2120:NOTCH2_c.1107-11607:KCND3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH2:KCND3}	8156427	60	0	50	10	54
P-0066911-T01-IM7	SOMATIC	NF1	NF1	17	17	29539317	29542867	Intron of NF1(+):2Kb before exon 13	Intron of NF1(+):1Kb after exon 13	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.1393-2152_c.1527+1264dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	3550	51	0	9	10	10
P-0066911-T01-IM7	SOMATIC	RPTOR	RPTOR	X	17	30044108	78727803	IGR: 190Kb before MAGEB2(+)	Intron of RPTOR(+):6bp before exon 6	GRCh37	TRANSLOCATION	RPTOR (NM_020761) rearrangement: t(17;X)(q25.3;p21.2)(chr17:g.78727803::chrX:g.30044108)	PRECISE		MANUAL_OK	3to3	-	0	60	0	5	10	5
P-0066912-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89346878	89349667	Exon 9 of ANKRD11(-)	Exon 9 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.3283_c.6072del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2789	60	0	16	10	16
P-0066999-T01-IM7	SOMATIC	E4F1	TRAF7	16	16	2225643	2276830	Intron of TRAF7(+):20bp after exon 17	Intron of E4F1(+):2Kb before exon 2	GRCh37	DUPLICATION	E4F1 (NM_004424) - TRAF7 (NM_032271) rearrangement: c.158-1543:E4F1_c.1626+20:TRAF7dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {E4F1:TRAF7}	51187	60	0	6	10	6
P-0067066-T01-IM7	SOMATIC	ESR1	ESR1	17	6	53349863	152356006	Intron of HLF(+):4Kb after exon 2	Intron of ESR1(+):23Kb after exon 6	GRCh37	TRANSLOCATION	ESR1 (NM_001122740) rearrangement: t(6;17)(q25.1;q22)(chr6:g.152356006::chr17:g.53349863)	PRECISE		MANUAL_OK	5to5	-	0	60	0	23	10	23
P-0067067-T01-IM7	SOMATIC	ABCA3	CREBBP	16	16	2345775	3832990	Intron of ABCA3(-):34bp before exon 18	Intron of CREBBP(-):63bp before exon 6	GRCh37	DUPLICATION	ABCA3 (NM_001089) - CREBBP (NM_004380) rearrangement: c.2264-34:ABCA3_c.1331-63:CREBBPdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ABCA3:CREBBP}	1487215	60	0	26	10	26
P-0067069-T01-IM7	SOMATIC	EML4	ALK	2	2	29448169	42524961	Intron of ALK(-):157bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+2305:EML4_c.3172+158:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076792	60	0	74	10	73
P-0067081-T01-IM7	SOMATIC	TBX3	TBX3	12	3	115112689	133534313	Intron of TBX3(-):49bp before exon 7	Intron of SRPRB(+):120bp before exon 6	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(3;12)(q22.1;q24.21)(chr3:g.133534313::chr12:g.115112689)	PRECISE		MANUAL_OK	3to5	-	0	60	0	39	10	38
P-0067081-T01-IM7	SOMATIC	PLIN3	ERBB2	19	17	4846198	37883010	Intron of PLIN3(-):1Kb before exon 7	Intron of ERBB2(+):57bp before exon 25	GRCh37	TRANSLOCATION	PLIN3 (NM_005817) - ERBB2 (NM_004448) rearrangement: t(17;19)(q12;p13.3)(chr17:g.37883010::chr19:g.4846198)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {PLIN3:ERBB2}	0	60	0	54	10	61
P-0014577-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	45163147	63661781	IGR: 143Kb before TMEM72-AS1(-)	Intron of ARID5B(+):136bp before exon 2	GRCh37	INVERSION	ARID5B (NM_032199) rearrangement: c.22-137:ARID5B_chr10:g.45163147inv	PRECISE		MANUAL_OK	5to5	-	18498634	60	0	11	10	11
P-0014577-T02-IM7	SOMATIC	TRAF7	SNAPC4	16	9	2213984	139278477	Exon 2 of TRAF7(+)	Exon 14 of SNAPC4(-)	GRCh37	TRANSLOCATION	TRAF7 (NM_032271) - SNAPC4 (NM_003086) rearrangement: t(9;16)(q34.3;p13.3)(chr9:g.139278477::chr16:g.2213984)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {TRAF7:SNAPC4}	0	60	0	36	10	36
P-0066292-T03-IM7	SOMATIC	DNMT1	DNMT1	19	19	5452652	10270213	Promoter of ZNRF4(+):3Kb from tx start	Intron of DNMT1(-):120bp after exon 16	GRCh37	DELETION	DNMT1 (NM_001379) rearrangement: c.1232+121:DNMT1_chr19:g.5452652del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	4817561	60	0	29	10	29
P-0066292-T03-IM7	SOMATIC	RECQL4	RECQL4	8	8	140505569	145737508	IGR: 108Kb before KCNK9(-)	Intron of RECQL4(-):18bp after exon 19	GRCh37	INVERSION	RECQL4 (NM_004260.3) rearrangement: c.3237+19:RECQL4_chr8:g.140505569inv	PRECISE		MANUAL_OK	5to5	-	5231939	60	0	49	10	54
P-0067013-T01-IM7	SOMATIC	SMARCA2	SMARCA2	9	9	2186397	24749444	Intron of SMARCA2(+):169bp after exon 32	IGR: 206Kb before IZUMO3(-)	GRCh37	DELETION	SMARCA2 (NM_003070) rearrangement: c.4594+169:SMARCA2_chr9:g.2479444del	PRECISE		MANUAL_OK	3to5	-	22563047	60	0	12	8	12
P-0067017-T01-IM7	SOMATIC	UPK3A	EP300	22	22	41572752	45682724	Intron of EP300(+):24bp before exon 31	Intron of UPK3A(+):747bp after exon 2	GRCh37	DUPLICATION	UPK3A (NM_006953) - EP300 (NM_001429) rearrangement: c.209-329:UPK3A_c.5062-25:EP300dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {UPK3A:EP300}	4109972	60	0	22	10	22
P-0067022-T01-IM7	SOMATIC	JAK3	JAK3	19	19	17950075	21746385	Intron of JAK3(-):210bp after exon 10	IGR: 58Kb before ZNF429(+)	GRCh37	INVERSION	JAK3 (NM_000215) rearrangement: c.1441+211:JAK3_chr19:g.21746385inv	PRECISE		MANUAL_OK	3to3	-	3796310	60	0	50	10	50
P-0067022-T01-IM7	SOMATIC	AXL	AXL	19	19	38825321	41749003	Promoter of CATSPERG(+):1Kb from tx start	Intron of AXL(+):83bp after exon 11	GRCh37	INVERSION	AXL (NM_021913) rearrangement: c.1445+83:AXL_chr19:g.38825321inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2923682	49	0	49	10	52
P-0042732-T03-IM7	SOMATIC	NFU1	XPO1	2	2	61719137	69663866	Intron of XPO1(-):32bp after exon 16	Intron of NFU1(-):626bp after exon 1	GRCh37	DELETION	NFU1 (NM_001002755) - XPO1 (NM_003400) rearrangement: c.62+627:NFU1_c.1887+33:XPO1del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NFU1:XPO1}	7944729	60	0	22	0	101
P-0042732-T04-IM7	SOMATIC	NFU1	XPO1	2	2	61719375	69663869	Intron of XPO1(-):42bp before exon 16	Intron of NFU1(-):623bp after exon 1	GRCh37	DELETION	NFU1 (NM_001002755) - XPO1 (NM_003400) rearrangement: c.62+624:NFU1_c.1724-42:XPO1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {NFU1:XPO1}	7944494	60	0	22	10	22
P-0059971-T02-IM7	SOMATIC	ETV6	ETV6	12	12	11894135	12010850	Intron of ETV6(+):11Kb before exon 2	Intron of ETV6(+):4Kb after exon 4	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.34-11249_c.463+4355dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	116715	60	0	20	0	20
P-0059971-T02-IM7	SOMATIC	LATS1	MED4	13	6	48654880	149997632	Intron of MED4(-):769bp before exon 6	Intron of LATS1(-):58bp after exon 6	GRCh37	TRANSLOCATION	LATS1 (NM_004690) - MED4 (NM_014166) rearrangement: t(6;13)(q25.1;q14.2)(chr6:g.149997632::chr13:g.48654880)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {LATS1:MED4}	0	60	0	21	0	21
P-0062486-T02-IM7	SOMATIC	EGFR	EGFR	7	7	55157120	55222261	Intron of EGFR(+):53Kb before exon 2	Intron of EGFR(+):416bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-52859_c.889+416del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	65141	60	0	1001	10	2271
P-0062812-T03-IM7	SOMATIC	ATM	ATM	11	6	108190798	45443374	Intron of ATM(+):13bp after exon 44	Intron of RUNX2(+):16Kb before exon 4	GRCh37	TRANSLOCATION	ATM (NM_000051) rearrangement: t(6;11)(p21.1;q22.3)(chr6:g.45443374::chr11:g.108190798)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	7	10	7
P-0063734-T02-IM7	SOMATIC	CREBBP	CREBBP	16	16	3782832	3799573	Intron of CREBBP(-):894bp before exon 29	Intron of CREBBP(-):54bp after exon 21	GRCh37	DELETION	CREBBP (NM_004380) rearrangement: c.3836+55_c.4729-894del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	16741	60	0	7	10	7
P-0063940-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29688521	128672287	Exon 12 of EWSR1(+)	Intron of FLI1(+):3Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128672287::chr22:g.29688521)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:FLI1}	0	60	0	88	10	88
P-0065029-T02-IM7	SOMATIC	RARA	RARA	17	17	38511575	47470878	Exon 8 of RARA(+)	IGR: 11Kb before PHB(-)	GRCh37	INVERSION	RARA (NM_000964) rearrangement: c.1073:RARA_chr17:g.47470878inv	PRECISE		MANUAL_OK	5to5	-	8959303	60	0	3	10	3
P-0066010-T02-IM7	SOMATIC	TBX3	TBX3	12	12	115117628	115121658	Intron of TBX3(-):89bp after exon 3	5-UTR of TBX3(-):12Kb before coding start	GRCh37	DELETION	TBX3 (NM_016569) rearrangement: c.717+90:TBX3_chr12:g.115121658del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4030	60	0	9	10	9
P-0066577-T02-IM7	SOMATIC	TP53	TP53	17	17	7554123	7579706	Promoter of ATP1B2(+):130bp from tx start	Exon 3 of TP53(-)	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.90:TP53_chr17:g.7554123inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TP53:ATP1B2}	25583	60	0	7	0	12
P-0066577-T02-IM7	SOMATIC	EP300	EP300	22	22	41489022	41490333	Exon 1 of EP300(+)	Intron of EP300(+):1Kb after exon 1	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.14_c.94+1231del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1311	60	0	4	6	4
P-0066636-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	19	15284259	15426944	Intron of NOTCH3(-):619bp after exon 25	IGR: 37Kb before AKAP8(-)	GRCh37	DELETION	NOTCH3 (NM_000435) rearrangement: c.4736+620:NOTCH3_chr19:g.15426944del	IMPPRECISE		MANUAL_OK	3to5	-	142685	32	0	10	0	13
P-0066980-T01-IM7	SOMATIC	IKBKE	IKBKE	1	1	160864198	206652538	IGR: 18Kb before ITLN1(-)	Intron of IKBKE(+):62bp after exon 10	GRCh37	INVERSION	IKBKE (NM_014002) rearrangement: c.1183+62:IKBKE_chr1:g.160864198inv	PRECISE		MANUAL_OK	3to3	-	45788340	44	0	3	10	10
P-0067048-T02-IM7	SOMATIC	EML4	ALK	2	2	29447391	42494087	Intron of ALK(-):935bp after exon 19	Intron of EML4(+):2Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+2216:EML4_c.3172+936:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13046696	60	0	32	10	32
P-0067048-T02-IM7	SOMATIC	AURKA	AURKA	20	20	54956816	56057363	Intron of AURKA(-):189bp before exon 6	IGR: 14Kb before CTCFL(-)	GRCh37	INVERSION	AURKA (NM_003600) rearrangement: c.567-189:AURKA_chr20:g.56057363inv	PRECISE		MANUAL_OK	3to3	-	1100547	60	0	5	6	5
P-0067161-T01-IM7	SOMATIC	NF1	NF1	17	17	29631448	29667701	Intron of NF1(+):21Kb before exon 36	Intron of NF1(+):38bp after exon 46	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.4836-21390_c.7062+38dup	PRECISE		MANUAL_OK	5to3	Duplication of 11 exons : out of frame	36253	60	0	34	10	37
P-0067161-T01-IM7	SOMATIC	PRKAR1A	BRIP1	17	17	59819117	66526074	Intron of BRIP1(-):1Kb after exon 16	Exon 10 of PRKAR1A(+)	GRCh37	INVERSION	PRKAR1A (NM_212471) - BRIP1 (NM_032043) rearrangement: c.905:PRKAR1A_c.2379+1257:BRIP1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PRKAR1A:BRIP1}	6706957	60	0	29	10	30
P-0067166-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89717877	92098394	Intron of PTEN(+):101bp after exon 7	IGR: 64Kb before LOC101926942(-)	GRCh37	INVERSION	PTEN (NM_000314) rearrangement: c.801+101:PTEN_chr10:g.92098394inv	IMPPRECISE		MANUAL_OK	3to3	-	2380517	60	0	6	0	6
P-0067166-T01-IM7	SOMATIC	GSG1L	CCND1	16	11	27861557	69465976	Intron of GSG1L(-):5Kb before exon 4	Exon 5 of CCND1(+)	GRCh37	TRANSLOCATION	GSG1L (NM_001109763) - CCND1 (NM_053056) rearrangement: t(11;16)(q13.3;p12.1)(chr11:g.69465976::chr16:g.27861557)	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {GSG1L:CCND1}	0	60	0	15	0	24
P-0067195-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47161831	47181466	Exon 3 of SETD2(-)	Intron of SETD2(-):13Kb before exon 2	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.72-13313_c.4295del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19635	60	0	5	10	5
P-0067201-T01-IM7	SOMATIC	TET1	TET1	10	1	70392378	245006402	Intron of TET1(+):12Kb before exon 4	Exon 4 of COX20(+)	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(1;10)(q44;q21.3)(chr1:g.245006402::chr10:g.70392378)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {COX20:TET1}	0	22	31	10	6	12
P-0067209-T01-IM7	SOMATIC	FANCA	CDT1	16	16	88873015	89865554	Exon 7 of CDT1(+)	Intron of FANCA(-):19bp after exon 10	GRCh37	INVERSION	FANCA (NM_000135) - CDT1 (NM_030928) rearrangement: c.893+20:FANCA_c.1055:CDT1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FANCA:CDT1}	992539	60	0	59	10	71
P-0067209-T01-IM7	SOMATIC	NF1	NF1	17	17	29554370	29561032	Intron of NF1(+):61bp after exon 19	Intron of NF1(+):801bp after exon 27	GRCh37	DUPLICATION	NF1 (NM_001042492) rearrangement: c.2325+61_c.3708+801dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	6662	32	0	9	10	10
P-0067209-T01-IM7	SOMATIC	BRD4	BRD4	19	19	15349881	15423758	Exon 18 of BRD4(-)	IGR: 41Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.3771:BRD4_chr19:g.15423758del	PRECISE		MANUAL_OK	3to5	-	73877	60	0	16	10	17
P-0067210-T01-IM7	SOMATIC	BABAM1	BABAM1	19	19	17379563	17384863	5-UTR of BABAM1(+):52bp before coding start	Intron of BABAM1(+):30bp after exon 4	GRCh37	DELETION	BABAM1 (NM_001033549) rearrangement: c.465+30:BABAM1_chr19:g.17379563del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	5300	45	0	4	10	5
P-0067214-T01-IM7	SOMATIC	KEAP1	KEAP1	19	19	10599935	10601117	Exon 5 of KEAP1(-)	Intron of KEAP1(-):588bp before exon 4	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.1326-588_c.1641del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1182	60	0	4	10	7
P-0067221-T01-IM7	SOMATIC	EPAS1	EPAS1	2	2	46607614	46753065	Exon 12 of EPAS1(+)	IGR: 14Kb before ATP6V1E2(-)	GRCh37	DUPLICATION	EPAS1 (NM_001430) rearrangement: c.1803:EPAS1_chr2:g.46753065dup	IMPPRECISE		MANUAL_OK	5to3	-	145451	60	0	5	0	5
P-0067256-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120458551	145099871	Exon 34 of NOTCH2(-)	Intron of NBPF20(+):213Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.6794:NOTCH2_chr1:g.145099871inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH2:NBPF20}	24641320	60	0	18	10	18
P-0067270-T01-IM7	SOMATIC	ASXL1	ASXL1	20	20	31022928	31024143	Exon 12 of ASXL1(+)	Exon 12 of ASXL1(+)	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.2413_c.3628inv	PRECISE		MANUAL_OK	5to5	-	1215	56	0	2	6	2
P-0067270-T01-IM7	SOMATIC	CTTNBP2	MET	7	7	116413344	117431393	Intron of MET(+):1Kb after exon 14	Exon 4 of CTTNBP2(-)	GRCh37	INVERSION	CTTNBP2 (NM_033427) - MET (NM_000245) fusion: c.1857:CTTNBP2_c.3028+1301:METinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {CTTNBP2:MET}	1018049	60	0	10	10	14
P-0067321-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27101477	27203477	Exon 18 of ARID1A(+)	Promoter of GPN2(-):2Kb from tx start	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.4759:ARID1A_chr1:g.27203477del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	102000	60	0	28	10	28
P-0067323-T01-IM7	SOMATIC	NOTCH3	GPR158	19	10	15290710	25678409	Intron of NOTCH3(-):172bp after exon 20	Intron of GPR158(+):6Kb before exon 3	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) - GPR158 (NM_020752) rearrangement: t(10;19)(p12.1;p13.12)(chr10:g.25678409::chr19:g.15290710)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {NOTCH3:GPR158}	0	60	0	7	10	7
P-0067327-T01-IM7	SOMATIC	SMAD2	SMAD2	18	12	45372140	42143644	Exon 9 of SMAD2(-)	IGR: 312Kb before PDZRN4(+)	GRCh37	TRANSLOCATION	SMAD2 (NM_001003652) rearrangement: t(12;18)(q12;q21.1)(chr12:g.42143644::chr18:g.45372140)	PRECISE		MANUAL_OK	5to5	-	0	60	0	11	10	15
P-0067327-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	60256827	71015264	Intron of FHIT(-):257Kb before exon 6	Intron of FOXP1(-):57bp before exon 16	GRCh37	INVERSION	FOXP1 (NM_001244814) rearrangement: c.1723-57:FOXP1_chr3:g.60256827inv	PRECISE		MANUAL_OK	3to3	-	10758437	60	0	6	9	6
P-0067346-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48593397	48677838	Exon 10 of SMAD4(+)	IGR: 23Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1148:SMAD4_chr18:g.48677838del	PRECISE		MANUAL_OK	3to5	-	84441	60	0	5	9	5
P-0067348-T01-IM7	SOMATIC	RASSF5	IKBKE	1	1	206661210	206713557	Intron of IKBKE(+):40bp before exon 16	Intron of RASSF5(+):2Kb after exon 2	GRCh37	DUPLICATION	RASSF5 (NM_182663) - IKBKE (NM_014002) rearrangement: c.579+1935:RASSF5_c.1617-41:IKBKEdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {RASSF5:IKBKE}	52347	60	0	37	10	39
P-0067352-T01-IM7	SOMATIC	TSC1	TSC1	9	9	95901371	135781379	IGR: 18Kb before NINJ1(-)	Exon 15 of TSC1(-)	GRCh37	INVERSION	TSC1 (NM_000368) rearrangement: c.1586:TSC1_chr9:g.95901371inv	PRECISE		MANUAL_OK	3to3	-	39880008	60	0	33	10	53
P-0067355-T01-IM7	SOMATIC	FGFR2	FGFR2	17	10	19984542	123242165	5-UTR of SPECC1(+):15Kb before coding start	Intron of FGFR2(-):1Kb after exon 17	GRCh37	TRANSLOCATION	FGFR2 (NM_000141) rearrangement: t(10;17)(q26.13;p11.2)(chr10:g.123242165::chr17:g.19984542)	PRECISE		MANUAL_OK	5to5	Transcript Fusion {FGFR2:SPECC1}	0	60	0	29	10	39
P-0066863-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	40018979	42867115	3-UTR of ERG(-):15Kb after coding stop	Intron of TMPRSS2(-):610bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-610:TMPRSS2_c.-150+14603:ERGdel	PRECISE		MANUAL_OK	3to5	-	2848136	60	0	72	10	74
P-0067287-T01-IM7	SOMATIC	MAP3K14	MAP3K14	18	17	5523306	43348625	5-UTR of EPB41L3(-):129Kb before coding start	Intron of MAP3K14(-):37bp before exon 10	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(17;18)(q21.31;p11.31)(chr17:g.43348625::chr18:g.5523306)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	28	10	44
P-0067287-T01-IM7	SOMATIC	PARK2	ROS1	6	6	117674184	162863638	Exon 26 of ROS1(-)	Intron of PARK2(-):703bp after exon 2	GRCh37	DELETION	PARK2 (NM_004562) - ROS1 (NM_002944) fusion: c.171+704:PARK2_c.4290:ROS1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {PARK2:ROS1}	45189454	60	0	70	10	76
P-0067290-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39906782	42873135	Intron of ERG(-):41Kb after exon 3	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-3019:TMPRSS2_c.39+40804:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2966353	60	0	46	10	46
P-0067291-T01-IM7	SOMATIC	NADK	NADK	17	1	12566808	1690632	Promoter of MYOCD(+):2Kb from tx start	Exon 5 of NADK(-)	GRCh37	TRANSLOCATION	NADK (NM_001198994) rearrangement: t(1;17)(p36.33;p12)(chr1:g.1690632::chr17:g.12566808)	IMPPRECISE		MANUAL_OK	5to3	-	0	60	0	59	0	57
P-0067291-T01-IM7	SOMATIC	PIK3R2	PIK3R2	19	19	7801794	18271615	IGR: 3Kb before CD209(-)	Intron of PIK3R2(+):113bp before exon 4	GRCh37	INVERSION	PIK3R2 (NM_005027) rearrangement: c.416-114:PIK3R2_chr19:g.7801794inv	PRECISE		MANUAL_OK	5to5	-	10469821	46	0	5	5	6
P-0067297-T01-IM7	SOMATIC	TP53BP1	TP53BP1	16	15	32548331	43783909	IGR: 137Kb before TP53TG3(-)	Exon 4 of TP53BP1(-)	GRCh37	TRANSLOCATION	TP53BP1 (NM_001141980) rearrangement: t(15;16)(q15.3;p11.2)(chr15:g.43783909::chr16:g.32548331)	PRECISE		MANUAL_OK	5to3	-	0	51	0	10	10	10
P-0067297-T01-IM7	SOMATIC	PAK7	PAK7	20	20	9525098	11886411	Exon 8 of PAK7(-)	Intron of BTBD3(+):13Kb before exon 2	GRCh37	INVERSION	PAK7 (NM_177990) rearrangement: c.1787:PAK7_chr20:g.11886411inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {BTBD3:PAK7}	2361313	60	0	27	10	27
P-0067314-T01-IM7	SOMATIC	CCNE1	CCNE1	19	19	30312925	30314243	Exon 9 of CCNE1(+)	Intron of CCNE1(+):318bp before exon 12	GRCh37	INVERSION	CCNE1 (NM_001238) rearrangement: c.728_c.1111-319inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1318	60	0	5	10	5
P-0067315-T01-IM7	SOMATIC	NTRK1	NTRK1	19	1	45351594	156835209	Intron of PVRL2(+):2Kb after exon 1	Intron of NTRK1(+):618bp after exon 3	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) rearrangement: t(1;19)(q23.1;q13.32)(chr1:g.156835209::chr19:g.45351594)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	20	10	19
P-0067315-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739591	1808877	Intron of TACC3(+):162bp after exon 10	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2309:FGFR3_c.1941+162:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:TACC3}	69286	60	0	13	10	14
P-0038882-T03-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21940629	21970920	IGR: 27Kb before CDKN2A-AS1(+)	Exon 2 of CDKN2A(-)	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.438:CDKN2A_chr9:g.21940629del	PRECISE		MANUAL_OK	3to5	-	30291	60	0	16	10	16
P-0067300-T01-IM7	SOMATIC	PPFIBP1	CDK4	12	12	27793105	58144552	Intron of PPFIBP1(+):5Kb after exon 4	Intron of CDK4(-):4bp before exon 5	GRCh37	INVERSION	PPFIBP1 (NM_177444) - CDK4 (NM_000075) rearrangement: c.270+5057:PPFIBP1_c.523-4:CDK4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {PPFIBP1:CDK4}	30351447	44	0	38	10	39
P-0067303-T01-IM7	SOMATIC	MSI2	MSI2	17	17	54698551	55709202	IGR: 27Kb before NOG(+)	Intron of MSI2(+):5Kb after exon 10	GRCh37	DELETION	MSI2 (NM_138962) rearrangement: c.727+4538:MSI2_chr17:g.54698551del	PRECISE		MANUAL_OK	3to5	-	1010651	60	0	21	10	21
P-0067303-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71090501	71236422	Exon 7 of FOXP1(-)	Intron of FOXP1(-):11Kb after exon 2	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.180+10931_c.847del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	145921	58	0	27	10	29
P-0067303-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1740292	1808812	Intron of TACC3(+):863bp after exon 10	Intron of FGFR3(+):30bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-31:FGFR3_c.1941+863:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	68520	55	0	44	10	46
P-0067317-T01-IM7	SOMATIC	STK11	STK11	19	19	1217050	1221957	Intron of STK11(+):1Kb before exon 2	Exon 7 of STK11(+)	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.291-1366_c.872del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4907	60	0	8	10	9
P-0067318-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39877052	42866686	Intron of ERG(-):60Kb before exon 4	Intron of TMPRSS2(-):181bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-181:TMPRSS2_c.40-59508:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2989634	55	0	6	10	6
P-0035844-T04-IM7	SOMATIC	KIAA1549	BRAF	7	7	138567532	140493285	Intron of KIAA1549(-):1Kb before exon 11	Intron of BRAF(-):822bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4033-1202:KIAA1549_c.1140+823:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1925753	60	0	17	10	17
P-0066818-T02-IM7	SOMATIC	CDK12	CDK12	17	17	37634551	37646930	Intron of CDK12(+):7Kb after exon 2	Exon 3 of CDK12(+)	GRCh37	DELETION	CDK12 (NM_016507) rearrangement: c.1931+6535_c.2052del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12379	60	0	85	10	93
P-0067420-T01-IM7	SOMATIC	EWSR1	EWSR1	22	22	29623178	29691222	Intron of EMID1(+):638bp after exon 5	Intron of EWSR1(+):1Kb before exon 13	GRCh37	INVERSION	EWSR1 (NM_013986) rearrangement: c.1180-1007:EWSR1_chr22:g.29623178inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	68044	53	0	15	10	15
P-0067512-T01-IM7	SOMATIC	NOTCH1	ALK	9	2	139416748	29449152	Intron of NOTCH1(-):553bp after exon 4	Intron of ALK(-):635bp after exon 18	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) - ALK (NM_004304) fusion: t(2;9)(p23.2;q34.3)(chr2:g.29449152::chr9:g.139416748)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NOTCH1:ALK}	0	60	0	19	10	19
P-0061332-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39882285	42872834	Intron of ERG(-):65Kb before exon 4	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2718:TMPRSS2_c.40-64741:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2990549	60	0	4	10	5
P-0062948-T03-IM7	SOMATIC	KIF5B	RET	10	10	32315731	43610211	Intron of KIF5B(-):2Kb after exon 15	Intron of RET(+):27bp after exon 11	GRCh37	INVERSION	KIF5B (NM_004521) - RET (NM_020975) fusion: c.1725+1625:KIF5B_c.2136+27:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {KIF5B:RET}	11294480	60	0	4	4	4
P-0065101-T02-IM7	SOMATIC	EIF4A2	EIF4A2	12	3	59612352	186506996	IGR: 346Kb before LRIG3(-)	Exon 11 of EIF4A2(+)	GRCh37	TRANSLOCATION	EIF4A2 (NM_001967) rearrangement: t(3;12)(q27.3;q14.1)(chr3:g.186506996::chr12:g.59612352)	PRECISE		MANUAL_OK	3to3	-	0	60	0	24	10	24
P-0066660-T01-IM7	SOMATIC	CTNNB1	ZEB1	10	3	31768218	41268973	Intron of ZEB1(+):16Kb before exon 3	Intron of CTNNB1(+):130bp after exon 7	GRCh37	TRANSLOCATION	CTNNB1 (NM_001904) - ZEB1 (NM_001174093) rearrangement: t(3;10)(p22.1;p11.22)(chr3:g.41268973::chr10:g.31768218)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CTNNB1:ZEB1}	0	60	0	11	10	11
P-0066660-T01-IM7	SOMATIC	ESR1	ESR1	6	6	152029891	152129334	5-UTR of ESR1(+):99Kb before coding start	Exon 2 of ESR1(+)	GRCh37	DUPLICATION	ESR1 (NM_001122740) rearrangement: c.287:ESR1_chr6:g.152029891dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	99443	60	0	29	10	31
P-0066864-T01-IM7	SOMATIC	AR	AR	X	X	66765652	66771497	Exon 1 of AR(+)	Intron of AR(+):5Kb after exon 1	GRCh37	DUPLICATION	AR (NM_000044) rearrangement: c.664_c.1616+4893dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	5845	60	0	78	10	79
P-0067374-T01-IM7	SOMATIC	CSDE1	CSDE1	1	1	115284236	187654319	Exon 3 of CSDE1(-)	IGR: 592Kb before LINC01036(+)	GRCh37	INVERSION	CSDE1 (NM_001242891) rearrangement: c.50:CSDE1_chr1:g.187654319inv	PRECISE		MANUAL_OK	3to3	-	72370083	60	0	62	10	62
P-0067374-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89684812	89717618	Intron of PTEN(+):457bp before exon 3	Exon 7 of PTEN(+)	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.165-458_c.643del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	32806	60	0	17	10	18
P-0067374-T01-IM7	SOMATIC	ABL1	ATP6V1E1	22	9	18085705	133738151	Intron of ATP6V1E1(-):2Kb before exon 5	Exon 4 of ABL1(+)	GRCh37	TRANSLOCATION	ABL1 (NM_005157) - ATP6V1E1 (NM_001696) rearrangement: t(9;22)(q34.12;q11.21)(chr9:g.133738151::chr22:g.18085705)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ABL1:ATP6V1E1}	0	60	0	31	10	31
P-0067381-T01-IM7	SOMATIC	EP300	EP300	22	22	41570619	41572669	Intron of EP300(+):831bp after exon 29	Intron of EP300(+):107bp before exon 31	GRCh37	DELETION	EP300 (NM_001429) rearrangement: c.4779+831_c.5062-108del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2050	60	1	11	10	10
P-0067383-T01-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	60804938	67589804	Intron of ZSWIM6(+):12Kb before exon 5	Intron of PIK3R1(+):142bp after exon 11	GRCh37	INVERSION	PIK3R1 (NM_181523) rearrangement: c.1425+142:PIK3R1_chr5:g.60804938inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	6784866	60	0	20	10	18
P-0067385-T01-IM7	SOMATIC	UPF1	UPF1	19	19	16454906	18966740	IGR: 11Kb before EPS15L1(-)	Exon 12 of UPF1(+)	GRCh37	INVERSION	UPF1 (NM_002911) rearrangement: c.1551:UPF1_chr19:g.16454906inv	PRECISE		MANUAL_OK	3to3	-	2511834	50	0	2	10	13
P-0067390-T01-IM7	SOMATIC	ELF3	ELF3	9	1	116052170	201981531	Intron of PRPF4(+):575bp before exon 11	Exon 4 of ELF3(+)	GRCh37	TRANSLOCATION	ELF3 (NM_004433) rearrangement: t(1;9)(q32.1;q32)(chr1:g.201981531::chr9:g.116052170)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	23	10	22
P-0067394-T01-IM7	SOMATIC	ERG	ERG	X	21	2385315	39817580	Intron of DHRSX(-):34Kb after exon 1	Intron of ERG(-):36bp before exon 2	GRCh37	TRANSLOCATION	ERG (NM_182918) rearrangement: t(21;X)(q22.2;p22.33)(chr21:g.39817580::chrX:g.2385315)	PRECISE		MANUAL_OK	3to3	-	0	60	0	5	9	5
P-0067394-T01-IM7	SOMATIC	KDM6A	KDM6A	X	X	44938519	96447045	Exon 20 of KDM6A(+)	Intron of DIAPH2(+):50Kb after exon 22	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.3067:KDM6A_chrX:g.96447045inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	51508526	60	0	5	9	6
P-0067403-T01-IM7	SOMATIC	SPEN	SPEN	1	1	16246004	16248025	Exon 8 of SPEN(+)	Intron of SPEN(+):547bp after exon 9	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.1627_c.1749+547inv	IMPPRECISE		MANUAL_OK	5to5	-	2021	60	0	18	0	21
P-0067403-T01-IM7	SOMATIC	TAP2	TAP2	6	6	32797098	33901200	Intron of TAP2(-):78bp after exon 11	IGR: 34Kb before MIR7159(+)	GRCh37	DELETION	TAP2 (NM_018833) rearrangement: c.1932+79:TAP2_chr6:g.33901200del	PRECISE		MANUAL_OK	3to5	-	1104102	49	0	5	8	5
P-0045222-T03-IM7	SOMATIC	EML4	ALK	2	2	29447583	42553328	Intron of ALK(-):743bp after exon 19	Exon 20 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.2277:EML4_c.3172+744:ALKinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13105745	60	0	80	0	80
P-0067365-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39844171	42875849	Intron of ERG(-):26Kb after exon 1	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+4028:TMPRSS2_c.18+26116:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3031678	60	0	9	10	10
P-0067395-T01-IM7	SOMATIC	TSC2	TSC2	20	16	30314317	2115526	IGR: 13Kb before TPX2(+)	Exon 16 of TSC2(+)	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(16;20)(p13.3;q11.21)(chr16:g.2115526::chr20:g.30314317)	IMPPRECISE		MANUAL_OK	3to3	-	0	56	0	5	0	5
P-0014506-T05-IM7	SOMATIC	CD74	ROS1	6	5	117650623	149782872	Intron of ROS1(-):14bp before exon 32	Exon 7 of CD74(-)	GRCh37	TRANSLOCATION	CD74 (NM_001025159) - ROS1 (NM_002944) fusion: t(5;6)(q32;q22.1)(chr5:g.149782872::chr6:g.117650623)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CD74:ROS1}	0	60	0	54	10	55
P-0027119-T04-IM7	SOMATIC	EML4	ALK	2	2	29446711	42527544	Intron of ALK(-):317bp before exon 20	Intron of EML4(+):836bp before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-837:EML4_c.3173-317:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13080833	60	0	29	10	29
P-0054365-T02-IM7	SOMATIC	WT1	WT1	11	11	32393995	32456337	IGR: 15Kb before WT1(-)	Exon 1 of WT1(-)	GRCh37	DELETION	WT1 (NM_024426) rearrangement: c.555:WT1_chr11:g.32393995del	PRECISE		MANUAL_OK	3to5	-	62342	60	0	5	5	5
P-0062948-T04-IM7	SOMATIC	RET	KIF5B	10	10	32315733	43598025	Intron of KIF5B(-):2Kb after exon 15	Exon 3 of RET(+)	GRCh37	INVERSION	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.573:RET_c.1725+1623:KIF5Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RET:KIF5B}	11282292	60	0	3	7	3
P-0062948-T05-IM7	SOMATIC	RET	KIF5B	10	10	32315733	43598025	Intron of KIF5B(-):2Kb after exon 15	Exon 3 of RET(+)	GRCh37	INVERSION	RET (NM_020975) - KIF5B (NM_004521) rearrangement: c.573:RET_c.1725+1623:KIF5Binv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RET:KIF5B}	11282292	60	0	2	5	2
P-0063318-T02-IM7	SOMATIC	XPNPEP3	EP300	22	22	41314062	41573748	Intron of XPNPEP3(+):4Kb after exon 7	Exon 31 of EP300(+)	GRCh37	DELETION	XPNPEP3 (NM_022098) - EP300 (NM_001429) rearrangement: c.1055+3734:XPNPEP3_c.6033:EP300del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {XPNPEP3:EP300}	259686	51	0	32	10	32
P-0064716-T02-IM7	SOMATIC	EML4	ALK	2	2	29447739	42504321	Intron of ALK(-):587bp after exon 19	Intron of EML4(+):4Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-3669:EML4_c.3172+588:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13056582	60	0	3	10	3
P-0065854-T02-IM7	SOMATIC	APC	APC	5	5	112174534	112181557	Exon 16 of APC(+)	3-UTR of APC(+):91Kb after coding stop	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3243:APC_chr5:g.112181557del	PRECISE		MANUAL_OK	3to5	-	7023	60	0	37	10	37
P-0067126-T02-IM7	SOMATIC	ANKRD11	ARID2	16	12	89351386	46201282	Exon 9 of ANKRD11(-)	Intron of ARID2(+):4Kb before exon 4	GRCh37	TRANSLOCATION	ANKRD11 (NM_013275) - ARID2 (NM_152641) rearrangement: t(12;16)(q12;q24.3)(chr12:g.46201282::chr16:g.89351386)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {ANKRD11:ARID2}	0	60	0	7	10	7
P-0067126-T02-IM7	SOMATIC	MTOR	MTOR	2	1	227121174	11174360	IGR: 114Kb before LOC646736(+)	Intron of MTOR(-):14bp after exon 53	GRCh37	TRANSLOCATION	MTOR (NM_004958) rearrangement: t(1;2)(p36.22;q36.3)(chr1:g.11174360::chr2:g.227121174)	PRECISE		MANUAL_OK	5to5	-	0	60	0	22	10	26
P-0067222-T01-IM7	SOMATIC	FLT4	FLT4	5	5	180048777	180267345	Exon 13 of FLT4(-)	IGR: 7Kb before ZFP62(-)	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.1785:FLT4_chr5:g.180267345inv	PRECISE		MANUAL_OK	5to5	-	218568	60	0	50	10	57
P-0067456-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89333114	89337262	Promoter of ANKRD11(-):914bp from tx start	Exon 12 of ANKRD11(-)	GRCh37	DELETION	ANKRD11 (NM_013275) rearrangement: c.7769:ANKRD11_chr16:g.89333114del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4148	60	0	30	10	33
P-0067458-T01-IM7	SOMATIC	LATS2	LATS2	13	13	21563438	21572475	Exon 4 of LATS2(-)	Intron of LATS2(-):7Kb before exon 3	GRCh37	DELETION	LATS2 (NM_014572) rearrangement: c.343-6932_c.481del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	9037	60	0	8	0	9
P-0067489-T01-IM7	SOMATIC	APC	APC	5	5	112175170	112177604	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3879_c.6313del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2434	60	0	101	10	105
P-0067493-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29684305	32417552	Intron of EWSR1(+):289bp before exon 9	Intron of WT1(-):250bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417552::chr22:g.29684305)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	46	10	46
P-0067497-T01-IM7	SOMATIC	CIZ1	CIZ1	9	9	98100457	130953088	IGR: 105Kb before PTCH1(-)	Exon 2 of CIZ1(-)	GRCh37	DELETION	CIZ1 (NM_001131016) rearrangement: g.98100457_c.49del	PRECISE		MANUAL_OK	3to5	-	32852631	60	0	19	10	20
P-0067498-T01-IM7	SOMATIC	CIRH1A	CTCF	16	16	67644841	69180974	Exon 3 of CTCF(+)	Intron of CIRH1A(+):3Kb before exon 7	GRCh37	DUPLICATION	CIRH1A (NM_032830) - CTCF (NM_006565) rearrangement: c.739-3466:CIRH1A_c.106:CTCFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CIRH1A:CTCF}	1536133	48	0	11	10	11
P-0067550-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157255604	157521697	Intron of ARID1B(+):995bp before exon 5	Intron of ARID1B(+):141bp before exon 18	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.1927-996_c.4111-142del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 13 exons : in frame	266093	60	0	7	0	7
P-0067602-T01-IM7	SOMATIC	FGFR3	TACC3	4	4	1739166	1808775	Intron of TACC3(+):111bp after exon 9	Intron of FGFR3(+):67bp before exon 18	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2275-68:FGFR3_c.1836+111:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	69609	60	0	116	10	120
P-0067632-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11113714	28036378	Exon 12 of SMARCA4(+)	IGR: 245Kb before LINC00662(-)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.1822:SMARCA4_chr19:g.28036378del	PRECISE		MANUAL_OK	3to5	-	16922664	60	1	181	10	201
P-0057262-T03-IM7	SOMATIC	BRD4	BRD4	19	19	15365205	15367992	Intron of BRD4(-):132bp before exon 11	Intron of BRD4(-):8bp before exon 8	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.1342-8_c.2048-132del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	2787	49	0	7	10	7
P-0057262-T03-IM7	SOMATIC	BARD1	BARD1	2	2	215610551	215657353	Exon 8 of BARD1(-)	Intron of BARD1(-):184bp before exon 3	GRCh37	DELETION	BARD1 (NM_000465) rearrangement: c.216-184_c.1705del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	46802	60	0	39	10	46
P-0066725-T02-IM7	SOMATIC	EWSR1	ERG	22	21	29683778	39766183	Intron of EWSR1(+):655bp after exon 8	Intron of ERG(-):2Kb before exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ERG (NM_182918) fusion: t(21;22)(q22.2;q12.2)(chr21:g.39766183::chr22:g.29683778)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:ERG}	0	60	0	83	10	83
P-0067492-T01-IM7	SOMATIC	MGA	MGA	15	15	41952039	41999967	Promoter of MGA(+):570bp from tx start	Exon 6 of MGA(+)	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.2230:MGA_chr15:g.41952039inv	PRECISE		MANUAL_OK	5to5	-	47928	60	0	10	10	10
P-0067492-T01-IM7	SOMATIC	MGA	MGA	15	15	41999967	42012529	Exon 6 of MGA(+)	Intron of MGA(+):7Kb after exon 9	GRCh37	DUPLICATION	MGA (NM_001164273) rearrangement: c.2230_c.3430+6835dup	IMPPRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	12562	60	0	14	0	14
P-0006948-T03-IM7	SOMATIC	NCOR1	NCOR1	17	4	16075183	45047621	Exon 4 of NCOR1(-)	IGR: 344Kb before GNPDA2(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(4;17)(p12;p11.2)(chr4:g.45047621::chr17:g.16075183)	PRECISE		MANUAL_OK	3to5	-	0	26	0	18	10	18
P-0016230-T02-IM7	SOMATIC	KDM6A	KDM6A	X	X	44894460	44945215	Intron of KDM6A(+):230bp after exon 7	Exon 24 of KDM6A(+)	GRCh37	DELETION	KDM6A (NM_021140) rearrangement: c.619+230_c.3539del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	50755	60	0	8	10	8
P-0030617-T05-IM7	SOMATIC	BRCA2	BRCA2	13	13	32905608	32906828	Intron of BRCA2(+):441bp after exon 9	Exon 10 of BRCA2(+)	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.793+441_c.1213inv	IMPPRECISE		MANUAL_OK	3to3	Antisense Fusion	1220	60	0	19	0	20
P-0030617-T05-IM7	SOMATIC	BRCA2	BRCA2	13	13	32906672	32907547	Exon 10 of BRCA2(+)	Intron of BRCA2(+):23bp after exon 10	GRCh37	INVERSION	BRCA2 (NM_000059) rearrangement: c.1057_c.1909+23inv	PRECISE		MANUAL_OK	5to5	-	875	60	0	31	10	34
P-0030617-T05-IM7	SOMATIC	PLK2	PLK2	5	5	57749990	57752679	3-UTR of PLK2(-):419bp after coding stop	Intron of PLK2(-):92bp after exon 8	GRCh37	DELETION	PLK2 (NM_006622) rearrangement: c.1156+93:PLK2_chr5:g.57749990del	PRECISE		MANUAL_OK	3to5	-	2689	60	0	29	10	32
P-0051960-T03-IM7	SOMATIC	TOP1	TOP1	20	20	39726743	40649293	Intron of TOP1(+):111bp before exon 11	IGR: 52Kb before PTPRT(-)	GRCh37	INVERSION	TOP1 (NM_003286) rearrangement: c.853-112:TOP1_chr20:g.40649293inv	PRECISE		MANUAL_OK	5to5	-	922550	60	0	7	7	7
P-0060301-T02-IM7	SOMATIC	SMAD4	SMAD4	18	18	48573549	48680242	Exon 2 of SMAD4(+)	IGR: 21Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.133:SMAD4_chr18:g.48680242del	PRECISE		MANUAL_OK	3to5	-	106693	60	0	71	10	77
P-0062142-T04-IM7	SOMATIC	EWSR1	FLI1	22	11	29685696	128644385	Intron of EWSR1(+):921bp after exon 9	Intron of FLI1(+):2Kb after exon 4	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128644385::chr22:g.29685696)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:FLI1}	0	60	0	26	10	26
P-0065034-T02-IM7	SOMATIC	TPR	NTRK1	1	1	156843651	186317102	Exon 8 of NTRK1(+)	Intron of TPR(-):512bp before exon 22	GRCh37	INVERSION	TPR (NM_003292) - NTRK1 (NM_002529) fusion: c.2777-512:TPR_c.1077:NTRK1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPR:NTRK1}	29473451	31	0	26	10	38
P-0066821-T02-IM7	SOMATIC	NF1	NF1	17	17	29487021	29512247	Intron of NF1(+):910bp after exon 3	Intron of NF1(+):3Kb after exon 8	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.288+910_c.888+2564del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : in frame	25226	60	0	6	10	6
P-0067093-T02-IM7	SOMATIC	EML4	ALK	2	2	29447303	42474335	Intron of ALK(-):909bp before exon 20	Intron of EML4(+):2Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+1508:EML4_c.3173-909:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13027032	60	0	43	10	43
P-0067339-T02-IM7	SOMATIC	TP53	TP53	17	17	7575699	7589630	Intron of TP53(-):1Kb after exon 9	5-UTR of TP53(-):17Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+1154:TP53_chr17:g.7589630del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13931	43	0	6	10	8
P-0067375-T01-IM7	SOMATIC	BRD4	BRD4	19	16	15383705	30865849	Exon 2 of BRD4(-)	Intron of BCL7C(-):19Kb before exon 6	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(16;19)(p11.2;p13.12)(chr16:g.30865849::chr19:g.15383705)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRD4:BCL7C}	0	60	0	24	10	24
P-0067525-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	17	38787192	38789442	Intron of SMARCE1(-):16bp before exon 10	Intron of SMARCE1(-):823bp before exon 8	GRCh37	DELETION	SMARCE1 (NM_003079) rearrangement: c.542-823_c.817-16del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	2250	60	0	6	7	6
P-0067611-T01-IM7	SOMATIC	STAG2	STAG2	X	X	123060837	123191670	IGR: 34Kb before STAG2(+)	Intron of STAG2(+):45bp before exon 15	GRCh37	DELETION	STAG2 (NM_001042749) rearrangement: c.1305-46:STAG2_chrX:g.123060837del	PRECISE		MANUAL_OK	3to5	-	130833	60	0	31	10	31
P-0067645-T01-IM7	SOMATIC	NF1	NF1	17	3	29663244	3192220	Intron of NF1(+):106bp before exon 40	3-UTR of CRBN(-):328bp after coding stop	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(3;17)(p26.2;q11.2)(chr3:g.3192220::chr17:g.29663244)	IMPPRECISE		MANUAL_OK	5to5	-	0	60	0	9	0	9
P-0067645-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974513	21981239	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-10032_c.194-3306del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6726	60	0	15	10	16
P-0067690-T01-IM7	SOMATIC	GNAS	GNAS	20	20	57473970	57477303	Intron of GNAS(+):25bp before exon 3	Intron of GNAS(+):1Kb before exon 4	GRCh37	INVERSION	GNAS (NM_000516) rearrangement: c.213-26_c.258-1283inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	3333	57	0	5	10	5
P-0067692-T01-IM7	SOMATIC	TEK	TEK	9	9	27203154	27209483	Intron of TEK(+):37bp after exon 13	Intron of TEK(+):254bp after exon 16	GRCh37	DELETION	TEK (NM_000459) rearrangement: c.2209+37_c.2686+254del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	6329	60	0	3	10	3
P-0067693-T01-IM7	SOMATIC	TERT	TERT	5	5	1295654	14435303	Promoter of TERT(-):42Kb from tx start	Intron of TRIO(+):15Kb after exon 34	GRCh37	INVERSION	TERT (NM_198253)  rearrangement: g.1295654_g.14435303del	PRECISE		MANUAL_OK	3to3	Transcript Fusion {TRIO:TERT}	13139649	60	0	35	10	35
P-0067726-T01-IM7	SOMATIC	B2M	B2M	15	15	45003811	45007621	Exon 1 of B2M(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.67_c.68del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3810	60	0	29	10	35
P-0067726-T01-IM7	SOMATIC	AURKA	AURKA	20	20	35369125	54945306	3-UTR of NDRG3(-):5Kb after coding stop	Exon 9 of AURKA(-)	GRCh37	INVERSION	AURKA (NM_003600) rearrangement: c.1120:AURKA_chr20:g.35369125inv	PRECISE		MANUAL_OK	5to5	-	19576181	60	0	7	10	9
P-0067735-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39872791	42868218	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1713:TMPRSS2_c.40-55247:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2995427	60	0	10	10	11
P-0067737-T01-IM7	SOMATIC	CYHR1	RECQL4	8	8	145687096	145739785	Intron of CYHR1(-):3Kb after exon 2	Intron of RECQL4(-):39bp before exon 11	GRCh37	DUPLICATION	CYHR1 (NM_138496) - RECQL4 (NM_004260) rearrangement: c.246+2747:CYHR1_c.1705-39:RECQL4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {CYHR1:RECQL4}	52689	60	0	31	10	32
P-0067747-T01-IM7	SOMATIC	RAD50	RAD50	5	5	130981465	131951772	Intron of FNIP1(-):1Kb before exon 18	Exon 20 of RAD50(+)	GRCh37	INVERSION	RAD50 (NM_005732) rearrangement: c.3114:RAD50_chr5:g.130981465inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {RAD50:FNIP1}	970307	60	0	19	0	19
P-0067747-T01-IM7	SOMATIC	RAD50	RAD50	5	5	131951771	140505772	Exon 20 of RAD50(+)	Promoter of PCDHB4(+):4Kb from tx start	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.3113:RAD50_chr5:g.140505772del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {RAD50:PCDHB4}	8554001	55	0	27	10	28
P-0067748-T01-IM7	SOMATIC	MAP2K4	MAP2K4	17	3	11985086	51991284	Intron of MAP2K4(+):239bp after exon 3	3-UTR of GPR62(+):2Kb after coding stop	GRCh37	TRANSLOCATION	MAP2K4 (NM_003010) rearrangement: t(3;17)(p21.2;p12)(chr3:g.51991284::chr17:g.11985086)	PRECISE		MANUAL_OK	3to3	-	0	60	0	11	10	10
P-0067823-T01-IM7	SOMATIC	RECQL4	RECQL4	8	8	39203243	145737929	5-UTR of ADAM5(+):57Kb before coding start	Exon 18 of RECQL4(-)	GRCh37	INVERSION	RECQL4 (NM_004260) rearrangement: c.2901:RECQL4_chr8:g.39203243inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {RECQL4:ADAM5}	106534686	60	0	11	10	14
P-0067826-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	136925304	139402276	5-UTR of BRD3(-):27Kb before coding start	Intron of NOTCH1(-):130bp after exon 21	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.3510+131:NOTCH1_chr9:g.136925304del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {NOTCH1:BRD3}	2476972	60	0	12	10	12
P-0067579-T02-IM7	SOMATIC	STAT5A	STAT5A	17	17	38578417	40459463	IGR: 21Kb before IGFBP4(+)	Exon 15 of STAT5A(+)	GRCh37	DUPLICATION	STAT5A (NM_003152) rearrangement: c.1724:STAT5A_chr17:g.38578417dup	PRECISE		MANUAL_OK	5to3	-	1881046	60	0	13	10	15
P-0067579-T02-IM7	SOMATIC	TAP2	TAP2	6	6	32803359	33183894	Intron of TAP2(-):60bp after exon 4	IGR: 8Kb before RING1(+)	GRCh37	INVERSION	TAP2 (NM_018833) rearrangement: c.739+61:TAP2_chr6:g.33183894inv	PRECISE		MANUAL_OK	5to5	-	380535	60	0	13	10	13
P-0067662-T01-IM7	SOMATIC	SETDB1	SETDB1	1	1	150931694	201039579	Exon 15 of SETDB1(+)	Intron of CACNA1S(-):47bp before exon 17	GRCh37	DELETION	SETDB1 (NM_000069) rearrangement : c.2371:SETDB1_c.2228-47:CACNA1Sdel	PRECISE		MANUAL_OK	3to5	Antisense Fusion	50107885	60	0	25	10	26
P-0067662-T01-IM7	SOMATIC	STK11	SBNO2	19	19	1132291	1207333	Intron of SBNO2(-):5Kb before exon 5	Intron of STK11(+):131bp after exon 1	GRCh37	INVERSION	STK11 (NM_000455) - SBNO2 (NM_014963) rearrangement: c.290+131:STK11_c.280-4527:SBNO2inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {STK11:SBNO2}	75042	60	0	16	10	16
P-0067662-T01-IM7	SOMATIC	RAF1	RAF1	20	3	31643937	12641770	Intron of BPIFB3(+):410bp before exon 2	Exon 9 of RAF1(-)	GRCh37	TRANSLOCATION	RAF1 (NM_002880) rearrangement: t(3;20)(p25.2;q11.21)(chr3:g.12641770::chr20:g.31643937)	PRECISE		MANUAL_OK	5to3	-	0	60	0	29	10	28
P-0067662-T01-IM7	SOMATIC	EWSR1	EWSR1	22	4	29684371	90161706	Intron of EWSR1(+):223bp before exon 9	IGR: 4Kb before GPRIN3(-)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(4;22)(q22.1;q12.2)(chr4:g.90161706::chr22:g.29684371)	PRECISE		MANUAL_OK	3to3	-	0	60	0	39	10	39
P-0067740-T01-IM7	SOMATIC	MYCL	MYCL	1	1	40356950	40364743	IGR: 4Kb before MYCL(-)	Intron of MYCL(-):1Kb before exon 3	GRCh37	DELETION	MYCL (NM_001033082) rearrangement: c.587-1101:MYCL_chr1:g.40356950del	PRECISE		MANUAL_OK	3to5	-	7793	60	0	9	10	9
P-0067801-T01-IM7	SOMATIC	NF1	NF1	18	17	46220877	29592387	Intron of CTIF(+):17Kb before exon 8	Intron of NF1(+):30bp after exon 35	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;18)(q11.2;q21.1)(chr17:g.29592387::chr18:g.46220877)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	56	10	53
P-0067803-T01-IM7	SOMATIC	CIC	CIC	19	19	21876973	42797104	IGR: 30Kb before ZNF100(-)	Intron of CIC(+):3bp before exon 15	GRCh37	DELETION	CIC (NM_015125) rearrangement: c.3470-4:CIC_chr19:g.21876973del	PRECISE		MANUAL_OK	3to5	-	20920131	60	0	12	10	12
P-0067806-T01-IM7	SOMATIC	CBL	CBL	11	11	119148852	119150614	Intron of CBL(+):23bp before exon 8	Intron of CBL(+):1Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1096-24_c.1431+1191del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1762	60	0	13	10	13
P-0067807-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27037897	27094130	Intron of ARID1A(+):14Kb after exon 1	Intron of ARID1A(+):150bp before exon 11	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.1137+13866_c.2989-151del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	56233	60	0	24	10	25
P-0067815-T01-IM7	SOMATIC	TERT	TERT	5	5	1295570	1533497	Promoter of TERT(-):42Kb from tx start	IGR: 23Kb before MIR6075(-)	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-466:TERT_chr5:g.1533497dup	PRECISE		MANUAL_OK	3to5	-	237927	60	0	24	10	24
P-0067849-T01-IM7	SOMATIC	MAP2K2	MAP2K2	20	19	24501627	4095434	5-UTR of SYNDIG1(+):22Kb before coding start	Exon 9 of MAP2K2(-)	GRCh37	TRANSLOCATION	MAP2K2 (NM_030662) rearrangement: t(19;20)(p13.3;p11.21)(chr19:g.4095434::chr20:g.24501627)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	20	10	20
P-0067850-T01-IM7	SOMATIC	NTRK1	NTRK1	17	1	37381668	156844896	Exon 1 of STAC2(-)	Intron of NTRK1(+):96bp after exon 11	GRCh37	TRANSLOCATION	NTRK1 (NM_002529) rearrangement: t(1;17)(q23.1;q12)(chr1:g.156844896::chr17:g.37381668)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	8	9	8
P-0067853-T01-IM7	SOMATIC	ARID1B	ARID1B	6	6	157449974	157469780	Intron of ARID1B(+):4Kb before exon 8	Exon 9 of ARID1B(+)	GRCh37	DELETION	ARID1B (NM_020732) rearrangement: c.2372-4188_c.2574del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	19806	56	0	7	10	7
P-0067857-T01-IM7	SOMATIC	TP53	TP53	17	17	7578140	7956957	Intron of TP53(-):36bp after exon 6	IGR: 15Kb before ALOX15B(+)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.672+37:TP53_chr17:g.7956957del	PRECISE		MANUAL_OK	3to5	-	378817	60	0	43	10	43
P-0067783-T02-IM7	SOMATIC	TP53	TP53	17	17	7578533	7580503	Exon 5 of TP53(-)	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.397:TP53_chr17:g.7580503del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1970	60	0	22	10	34
P-0067841-T01-IM7	SOMATIC	NAB2	STAT6	12	12	57487573	57493107	Intron of NAB2(+):192bp after exon 6	Exon 16 of STAT6(-)	GRCh37	INVERSION	NAB2 (NM_005967) - STAT6 (NM_003153) rearrangement: c.1468+192:NAB2_c.1861:STAT6inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NAB2:STAT6}	5534	60	0	68	10	68
P-0067842-T01-IM7	SOMATIC	NF1	NF1	17	17	29656436	29667574	Intron of NF1(+):877bp before exon 38	Exon 46 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5610-878_c.6973del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	11138	60	0	19	10	20
P-0067843-T01-IM7	SOMATIC	PLIN3	RAF1	19	3	4839545	12641401	Exon 8 of PLIN3(-)	Intron of RAF1(-):94bp before exon 10	GRCh37	TRANSLOCATION	PLIN3 (NM_005817) - RAF1 (NM_002880) rearrangement: t(3;19)(p25.2;p13.3)(chr3:g.12641401::chr19:g.4839545)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {PLIN3:RAF1}	0	60	0	9	10	9
P-0067843-T01-IM7	SOMATIC	CDKN2A	MTAP	9	9	21830762	21973605	Intron of MTAP(+):7Kb before exon 5	Intron of CDKN2A(-):2Kb before exon 2	GRCh37	INVERSION	CDKN2A (NM_058195) - MTAP (NM_002451) rearrangement: c.194-2398:CDKN2A_c.348-7145:MTAPinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {CDKN2A:MTAP}	142843	60	0	3	10	6
P-0067876-T01-IM7	SOMATIC	TP53	TP53	17	17	7577221	7719768	Intron of TP53(-):66bp before exon 8	Intron of DNAH2(+):120bp before exon 63	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.783-66:TP53_chr17:g.7719768del	PRECISE		MANUAL_OK	3to5	-	142547	60	0	24	10	25
P-0067910-T01-IM7	SOMATIC	TERT	TERT	19	5	45420525	1295706	Intron of APOC1(+):943bp after exon 3	Promoter of TERT(-):42Kb from tx start	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: (5;19)(p15.33;q13.32)(chr5:g.1295653::chr19:g.45420525)	PRECISE		MANUAL_OK	5to3	-	0	60	0	36	10	36
P-0067916-T01-IM7	SOMATIC	ERBB4	ERBB4	2	2	212252678	212364006	Exon 26 of ERBB4(-)	Intron of ERBB4(-):63Kb after exon 20	GRCh37	DUPLICATION	ERBB4 (NM_005235) rearrangement: c.2487+62622_c.3175dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	111328	60	0	52	10	55
P-0067918-T01-IM7	SOMATIC	INPP4A	INPP4A	2	2	99172172	99188966	Exon 17 of INPP4A(+)	Intron of INPP4A(+):311bp before exon 24	GRCh37	DELETION	INPP4A (NM_001134224) rearrangement: c.1738_c.2534-312del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	16794	60	0	4	10	4
P-0067922-T01-IM7	SOMATIC	SLFN11	SLFN11	17	11	33690003	3174886	Exon 3 of SLFN11(-)	5-UTR of OSBPL5(-):65Kb before coding start	GRCh37	TRANSLOCATION	SLFN11 (NM_001104589) rearrangement: t(11;17)(p13;p15.4)(chr10:g.13272641::chr17:g.33690003)	PRECISE		MANUAL_OK	5to5	Antisense Fusion	0	60	0	6	10	6
P-0067922-T01-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	185178853	185190831	Intron of MAP3K13(+):2Kb before exon 8	Exon 11 of MAP3K13(+)	GRCh37	DUPLICATION	MAP3K13 (NM_004721) rearrangement: c.1279-2485_c.1712dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	11978	60	0	83	10	88
P-0058582-T03-IM7	SOMATIC	EWSR1	WT1	22	11	29684343	32414909	Intron of EWSR1(+):251bp before exon 9	Intron of WT1(-):608bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414909::chr22:g.29684343)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	47	10	47
P-0067358-T03-IM7	SOMATIC	ATXN7	MAGI1	3	3	63981424	65735235	Exon 11 of ATXN7(+)	Intron of MAGI1(-):127Kb before exon 2	GRCh37	INVERSION	ATXN7 (NM_001177387) - MAGI1 (NM_001033057) rearrangement: c.1926:ATXN7_c.314-127472:MAGI1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ATXN7:MAGI1}	1753811	37	0	8	8	8
P-0067660-T01-IM7	SOMATIC	TET1	TET1	10	7	70412276	124703166	Exon 6 of TET1(+)	5-UTR of POT1-AS1(+):82Kb before coding start	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(7;10)(q31.33;q21.3)(chr7:g.124703166::chr10:g.70412276)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	9	10	9
P-0067660-T01-IM7	SOMATIC	EGFR	EGFR	7	5	55223155	27556729	Intron of EGFR(+):367bp before exon 8	IGR: 84Kb before LINC01021(+)	GRCh37	TRANSLOCATION	EGFR (NM_005228) rearrangement: t(5;7)(p14.1;p11.2)(chr5:g.27556729::chr7:g.55223155)	PRECISE		MANUAL_OK	5to3	-	0	60	0	18	10	18
P-0067668-T01-IM7	SOMATIC	PAK1	PAK1	11	7	77054688	115107833	Intron of PAK1(-):175bp after exon 10	IGR: 344Kb before LINC01392(-)	GRCh37	TRANSLOCATION	PAK1 (NM_002576) rearrangement: t(7;11)(q31.2;q13.5)(chr7:g.115107833::chr11:g.77054688)	PRECISE		MANUAL_OK	5to3	-	0	60	0	17	10	17
P-0067780-T02-IM7	SOMATIC	MSI2	RAD51C	17	17	55335591	56776479	Intron of MSI2(+):39bp before exon 4	Intron of RAD51C(+):2Kb after exon 3	GRCh37	DELETION	MSI2 (NM_138962) - RAD51C (NM_058216) rearrangement: c.186-40:MSI2_c.571+2259:RAD51Cdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MSI2:RAD51C}	1440888	41	0	4	10	7
P-0067780-T02-IM7	SOMATIC	RASA1	RASA1	5	5	86659290	161387040	Exon 11 of RASA1(+)	3-UTR of LINC01202(-):41Kb after coding stop	GRCh37	DELETION	RASA1 (NM_002890) rearrangement: c.1579:RASA1_chr5:g.161387040del	PRECISE		MANUAL_OK	3to5	-	74727750	60	0	78	10	80
P-0067780-T02-IM7	SOMATIC	KIT	KIT	9	4	26249080	55561613	IGR: 182Kb before LOC100506422(+)	Intron of KIT(+):64bp before exon 2	GRCh37	TRANSLOCATION	KIT (NM_000222) rearrangement: t(4;9)(q12;p21.2)(chr4:g.55561613::chr9:g.26249080)	PRECISE		MANUAL_OK	5to5	-	0	60	0	25	10	25
P-0067897-T01-IM7	SOMATIC	EWSR1	WT1	22	11	29683924	32414419	Intron of EWSR1(+):670bp before exon 9	Intron of WT1(-):118bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414419::chr22:g.29683924)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	79	10	78
P-0067926-T01-IM7	SOMATIC	PTPRT	PTPRT	20	20	41419928	41779346	Exon 3 of PTPRT(-)	Intron of PTPRT(-):39Kb after exon 1	GRCh37	INVERSION	PTPRT (NM_133170) rearrangement: c.88+38940_c.393inv	PRECISE		MANUAL_OK	3to3	-	359418	51	0	47	10	54
P-0067929-T01-IM7	SOMATIC	CHEK2	CHEK2	22	22	29129342	29130469	Intron of CHEK2(-):1Kb after exon 2	Exon 2 of CHEK2(-)	GRCh37	INVERSION	CHEK2 (NM_007194) rearrangement: c.241_c.319+1049inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	1127	60	0	16	0	16
P-0010177-T02-IM7	SOMATIC	EML4	ALK	2	2	29447358	42525732	Intron of ALK(-):964bp before exon 20	Intron of EML4(+):3Kb before exon 13	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1490-2649:EML4_c.3173-964:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13078374	60	0	4	9	4
P-0019023-T06-IM7	SOMATIC	TMPRSS2	ERG	21	21	39880807	42874781	Intron of ERG(-):63Kb before exon 4	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-4665:TMPRSS2_c.40-63263:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2993974	57	0	3	10	3
P-0067056-T02-IM7	SOMATIC	STK11	STK11	19	19	1154571	1218502	5-UTR of SBNO2(-):46Kb before coding start	Intron of STK11(+):3bp after exon 2	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.374+3:STK11_chr19:g.1154571del	PRECISE		MANUAL_OK	3to5	-	63931	60	0	36	10	37
P-0067908-T01-IM7	SOMATIC	BBC3	BBC3	19	17	47735798	7867801	Exon 1 of BBC3(-)	IGR: 32Kb before CNTROB(+)	GRCh37	TRANSLOCATION	BBC3 (NM_001127240) rearrangement: t(17;19)(p13.1;q13.32)(chr17:g.7867801::chr19:g.47735798)	IMPPRECISE		MANUAL_OK	3to5	-	0	41	0	7	0	7
P-0067989-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39884552	42871568	Intron of ERG(-):63Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-1452:TMPRSS2_c.39+63034:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2987016	60	0	4	10	3
P-0067991-T01-IM7	SOMATIC	ASXL1	ASXL1	20	20	31021651	31050904	Exon 11 of ASXL1(+)	Intron of NOL4L(-):7Kb before exon 3	GRCh37	INVERSION	ASXL1 (NM_015338) rearrangement: c.1650:ASXL1_chr20:g.31050904inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {ASXL1:NOL4L}	29253	60	0	6	10	6
P-0067993-T01-IM7	SOMATIC	NTRK2	NTRK2	9	9	87339224	87399389	Exon 10 of NTRK2(+)	Intron of NTRK2(+):32Kb after exon 14	GRCh37	DELETION	NTRK2 (NM_006180) rearrangement: c.806_c.1396+32389del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	60165	60	0	5	8	5
P-0068029-T01-IM7	SOMATIC	LRP1	NAB2	12	12	57487182	57539041	Intron of NAB2(+):7bp before exon 6	Exon 6 of LRP1(+)	GRCh37	DUPLICATION	LRP1 (NM_002332) - NAB2 (NM_005967) rearrangement: c.609:LRP1_c.1277-8:NAB2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {LRP1:NAB2}	51859	60	0	10	10	10
P-0067360-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29683491	32415349	Intron of EWSR1(+):368bp after exon 8	Intron of WT1(-):1Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415349::chr22:g.29683491)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	5	8	5
P-0068021-T01-IM7	SOMATIC	PRKD1	PRKD1	14	14	30100163	30224078	Exon 10 of PRKD1(-)	Intron of PRKD1(-):29Kb before exon 2	GRCh37	INVERSION	PRKD1 (NM_002742) rearrangement: c.265-29198_c.1457inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	123915	60	0	10	10	13
P-0068021-T01-IM7	SOMATIC	CDH1	CDH1	16	16	68530284	68842720	IGR: 43Kb before ZFP90(+)	Exon 5 of CDH1(+)	GRCh37	DELETION	CDH1 (NM_004360) rearrangement: c.656:CDH1_chr16:g.68530284del	PRECISE		MANUAL_OK	3to5	-	312436	60	0	2	10	2
P-0009897-T02-IM7	SOMATIC	NTRK2	NTRK2	9	9	87317319	90242315	Exon 6 of NTRK2(+)	Intron of DAPK1(+):11Kb before exon 4	GRCh37	INVERSION	NTRK2 (NM_006180) rearrangement: c.344:NTRK2_chr9:g.90242315inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	2924996	60	0	5	8	5
P-0024073-T03-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11136130	13658175	Exon 22 of SMARCA4(+)	IGR: 201Kb before CCDC130(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.3114:SMARCA4_chr19:g.13658175del	PRECISE		MANUAL_OK	3to5	-	2522045	58	0	5	10	5
P-0037864-T02-IM7	SOMATIC	NKAIN2	ROS1	6	6	117662563	124481824	Exon 29 of ROS1(-)	Intron of NKAIN2(+):122Kb before exon 2	GRCh37	INVERSION	NKAIN2 (NM_001040214) - ROS1 (NM_002944) fusion: c.55-122327:NKAIN2_c.4902:ROS1inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {NKAIN2:ROS1}	6819261	60	0	16	10	16
P-0039604-T04-IM7	SOMATIC	DNMT3B	DNMT3B	20	16	31390225	11628924	Exon 20 of DNMT3B(+)	IGR: 13Kb before LITAF(-)	GRCh37	TRANSLOCATION	DNMT3B (NM_006892) rearrangement: t(16;20)(p13.13;q11.21)(chr16:g.11628924::chr20:g.31390225)	PRECISE		MANUAL_OK	5to5	-	0	60	0	53	10	62
P-0039604-T04-IM7	SOMATIC	DNMT3B	DNMT3B	20	20	31385064	40375041	Exon 14 of DNMT3B(+)	IGR: 326Kb before PTPRT(-)	GRCh37	INVERSION	DNMT3B (NM_006892) rearrangement: c.1449:DNMT3B_chr20:g.40375041inv	PRECISE		MANUAL_OK	3to3	-	8989977	60	0	29	10	28
P-0039604-T04-IM7	SOMATIC	KIT	KIT	4	4	48791597	55604562	IGR: 41Kb before OCIAD1(+)	Intron of KIT(+):32bp before exon 21	GRCh37	INVERSION	KIT (NM_000222) rearrangement: c.2803-33:KIT_chr4:g.48791597inv	PRECISE		MANUAL_OK	3to3	-	6812965	60	0	19	10	19
P-0039604-T04-IM7	SOMATIC	EGFR	EGFR	7	7	55241220	55269410	Intron of EGFR(+):393bp before exon 18	Intron of EGFR(+):17bp before exon 26	GRCh37	DUPLICATION	EGFR (NM_005228) rearrangement: c.2062-394_c.3115-18dup	PRECISE		MANUAL_OK	5to3	Duplication of 8 exons : in frame	28190	60	0	117	10	126
P-0046083-T02-IM7	SOMATIC	EML4	ALK	2	2	29446665	42523642	Intron of ALK(-):271bp before exon 20	Intron of EML4(+):986bp after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+986:EML4_c.3173-271:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076977	60	0	22	10	22
P-0046083-T02-IM7	SOMATIC	FLT4	FLT4	5	5	180055946	180074181	Exon 8 of FLT4(-)	Intron of FLT4(-):2Kb after exon 1	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.58+2307_c.1039inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	18235	60	0	78	0	118
P-0046083-T02-IM7	SOMATIC	PAGE1	KDM6A	X	X	44733278	49456463	Intron of KDM6A(+):45bp after exon 2	Intron of PAGE1(-):486bp before exon 4	GRCh37	INVERSION	PAGE1 (NM_003785) - KDM6A (NM_021140) rearrangement: c.167-486:PAGE1_c.225+45:KDM6Ainv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PAGE1:KDM6A}	4723185	48	0	10	10	10
P-0050988-T06-IM7	SOMATIC	KEAP1	KEAP1	19	19	10600442	53113817	Exon 4 of KEAP1(-)	Promoter of ZNF83(-):2Kb from tx start	GRCh37	DUPLICATION	KEAP1 (NM_203500) rearrangement: c.1413:KEAP1_chr19:g.53113817dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KEAP1:ZNF83}	42513375	53	0	4	10	4
P-0052411-T05-IM7	SOMATIC	KIAA1549	BRAF	7	7	138548498	140493530	Intron of KIAA1549(-):2Kb before exon 16	Intron of BRAF(-):577bp after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.4930-2296:KIAA1549_c.1140+578:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KIAA1549:BRAF}	1945032	60	0	54	10	55
P-0057013-T02-IM7	SOMATIC	CRKL	CRKL	22	22	21295015	21296319	Intron of CRKL(+):6Kb after exon 2	Intron of CRKL(+):8Kb before exon 3	GRCh37	DELETION	CRKL (NM_005207) rearrangement: c.777+6483_c.778-7680del	PRECISE		MANUAL_OK	3to5	Deletion within intron	1304	60	0	27	10	28
P-0057194-T02-IM7	SOMATIC	TERT	TERT	5	5	1295348	1556705	Promoter of TERT(-):42Kb from tx start	IGR: 15Kb before SDHAP3(-)	GRCh37	INVERSION	TERT (NM_198253) rearrangement: g.1295348_g.1556705inv	IMPPRECISE		MANUAL_OK	3to3	-	261357	60	0	34	0	168
P-0059459-T04-IM7	SOMATIC	NF1	NF1	17	17	29583162	29585953	Intron of NF1(+):2Kb before exon 31	Intron of NF1(+):96bp before exon 32	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.4174-2200_c.4333-97del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2791	60	0	21	10	21
P-0062499-T02-IM7	SOMATIC	RBM10	RBM10	X	X	47004992	47011571	Intron of RBM10(+):77bp after exon 1	Intron of RBM10(+):5Kb after exon 2	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.70+77_c.212+4674del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	6579	60	0	40	10	46
P-0062608-T02-IM7	SOMATIC	FLCN	FLCN	17	17	17119017	17120608	Intron of FLCN(-):387bp before exon 12	Intron of FLCN(-):112bp before exon 10	GRCh37	INVERSION	FLCN (NM_144997) rearrangement: c.1063-112_c.1301-387inv	IMPPRECISE		MANUAL_OK	3to3	-	1591	60	0	40	0	40
P-0063049-T02-IM7	SOMATIC	ERG	ERG	21	21	39870392	47553150	5-UTR of ERG(-):115Kb before coding start	Promoter of COL6A2(+):35Kb from tx start	GRCh37	INVERSION	ERG (NM_004449) rearrangement: c.40-52848:ERG_chr21:g.47553150inv	IMPPRECISE		MANUAL_OK	3to3	Transcript Fusion {COL6A2:ERG}	7682758	60	0	5	0	5
P-0063254-T02-IM7	SOMATIC	ASXL2	ASXL2	2	2	25929300	26068430	IGR: 33Kb before ASXL2(-)	Exon 2 of ASXL2(-)	GRCh37	DUPLICATION	ASXL2 (NM_018263) rearrangement: c.60:ASXL2_chr2:g.25929300dup	PRECISE		MANUAL_OK	5to3	-	139130	60	0	22	10	23
P-0063858-T02-IM7	SOMATIC	AGO2	SAMD12	8	8	119426501	141568892	Intron of SAMD12(-):26Kb after exon 3	Intron of AGO2(-):221bp before exon 7	GRCh37	DELETION	AGO2 (NM_012154) - SAMD12 (NM_207506) rearrangement: c.791-221:AGO2_c.322+25570:SAMD12del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {AGO2:SAMD12}	22142391	42	0	2	10	2
P-0064523-T03-IM7	SOMATIC	MAP2K1	MAP2K1	15	15	66781473	66782007	Intron of MAP2K1(+):79bp before exon 9	Intron of MAP2K1(+):48bp before exon 10	GRCh37	DELETION	MAP2K1 (NM_002755) rearrangement: c.961-80_c.1023-49del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	534	58	0	10	0	12
P-0066821-T04-IM7	SOMATIC	DNMT3A	DNMT3A	2	2	25462084	25463171	Exon 20 of DNMT3A(-)	Exon 19 of DNMT3A(-)	GRCh37	DELETION	DNMT3A (NM_022552) rearrangement: c.2322_c.2323del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1087	51	0	2	8	2
P-0066857-T01-IM7	SOMATIC	HNF1B	BRCA1	17	17	36058480	41244472	Intron of HNF1B(-):601bp after exon 8	Exon 10 of BRCA1(-)	GRCh37	DUPLICATION	HNF1B (NM_000458) - BRCA1 (NM_007294) rearrangement: c.1653+602:HNF1B_c.3076:BRCA1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {HNF1B:BRCA1}	5185992	60	0	64	10	66
P-0067541-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39848100	42877906	Intron of ERG(-):22Kb after exon 1	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.55+1971:TMPRSS2_c.18+22187:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3029806	60	0	111	10	115
P-0067739-T01-IM7	SOMATIC	FUBP1	FUBP1	1	1	78430085	78440287	Intron of FUBP1(-):44bp before exon 11	Intron of FUBP1(-):4Kb after exon 1	GRCh37	DELETION	FUBP1 (NM_003902) rearrangement: c.120+4282_c.838-44del	PRECISE		MANUAL_OK	3to5	Deletion of 9 exons : in frame	10202	60	0	36	10	36
P-0067739-T01-IM7	SOMATIC	EZH2	EZH2	10	7	17511855	148506157	IGR: 83Kb before ST8SIA6-AS1(+)	Intron of EZH2(-):5bp after exon 19	GRCh37	TRANSLOCATION	EZH2 (NM_004456) rearrangement: t(7;10)(q36.1;p12.33)(chr7:g.148506157::chr10:g.17511855)	PRECISE		MANUAL_OK	3to3	-	0	60	0	36	10	36
P-0067774-T02-IM7	SOMATIC	GAB2	GAB2	11	1	77932875	42869233	Intron of GAB2(-):50bp before exon 8	Intron of RIMKLA(+):948bp before exon 3	GRCh37	TRANSLOCATION	GAB2 (NM_080491) rearrangement: t(1;11)(p34.2;q14.1)(chr1:g.42869233::chr11:g.77932875)	PRECISE		MANUAL_OK	3to5	-	0	60	0	22	10	22
P-0067776-T02-IM7	SOMATIC	RXRA	RXRA	9	9	97275921	137325829	IGR: 41Kb before PCAT7(+)	Intron of RXRA(+):118bp before exon 9	GRCh37	DELETION	RXRA (NM_002957) rearrangement: c.1136-119:RXRA_chr9:g.97275921del	PRECISE		MANUAL_OK	3to5	-	40049908	46	0	32	10	33
P-0067777-T02-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21971059	21974363	Exon 2 of CDKN2A(-)	Intron of CDKN2A(-):3Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3156_c.342del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3304	60	0	201	10	225
P-0067784-T02-IM7	SOMATIC	DIS3	DIS3	13	13	56172513	73337585	IGR: 424Kb before MIR5007(+)	Intron of DIS3(-):3bp after exon 16	GRCh37	INVERSION	DIS3 (NM_014953) rearrangement: c.2127+4:DIS3_chr13:g.56172513inv	PRECISE		MANUAL_OK	5to5	-	17165072	60	0	4	10	6
P-0067864-T02-IM7	SOMATIC	NF1	NF1	17	17	29475705	41474037	Intron of NF1(+):7Kb before exon 2	Promoter of ARL4D(+):2Kb from tx start	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.61-7296:NF1_chr17:g.41474037inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	11998332	60	0	28	10	27
P-0067864-T02-IM7	SOMATIC	CARD11	EIF2AK1	7	7	2966392	6078208	Exon 14 of CARD11(-)	Exon 10 of EIF2AK1(-)	GRCh37	DUPLICATION	CARD11 (NM_032415) - EIF2AK1 (NM_014413) rearrangement: c.1788:CARD11_c.1214:EIF2AK1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CARD11:EIF2AK1}	3111816	60	0	13	10	13
P-0067938-T01-IM7	SOMATIC	PGR	PGR	11	11	100999010	101004603	Exon 1 of PGR(-)	5-UTR of LOC101054525(+):25Kb before coding start	GRCh37	INVERSION	PGR (NM_000926) rearrangement: c.792:PGR_chr11:g.101004603inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LOC101054525:PGR}	5593	60	0	16	10	15
P-0067938-T01-IM7	SOMATIC	TSC2	TSC2	19	16	32630405	2120637	IGR: 37Kb before LOC101927411(-)	Intron of TSC2(+):58bp after exon 17	GRCh37	TRANSLOCATION	TSC2 (NM_000548) rearrangement: t(16;19)(p13.3;q13.11)(chr16:g.2120637::chr19:g.32630405)	PRECISE		MANUAL_OK	5to3	-	0	60	0	11	10	11
P-0067938-T01-IM7	SOMATIC	JAK2	JAK2	9	9	5090317	5422355	Intron of JAK2(+):128bp before exon 21	Intron of PLGRKT(-):10Kb after exon 3	GRCh37	INVERSION	JAK2 (NM_004972) rearrangement: c.2762-129:JAK2_chr9:g.5422355inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {PLGRKT:JAK2}	332038	60	0	162	10	210
P-0067939-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	31521358	31527055	Intron of DROSHA(-):36bp before exon 5	Intron of DROSHA(-):36bp before exon 4	GRCh37	INVERSION	DROSHA (NM_013235) rearrangement: c.21-36_c.855-36inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5697	51	0	5	10	5
P-0067969-T01-IM7	SOMATIC	ETV6	ETV6	19	12	54887603	12014462	IGR: 22Kb before LAIR1(-)	Intron of ETV6(+):8Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;19)(p13.2;q13.42)(chr12:g.12014462::chr19:g.54887603)	PRECISE		MANUAL_OK	5to5	-	0	60	0	16	10	18
P-0067975-T01-IM7	SOMATIC	ARID1A	ARID1A	1	1	27089481	27090760	Exon 8 of ARID1A(+)	Intron of ARID1A(+):984bp after exon 8	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.2437_c.2732+984del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1279	60	0	53	10	54
P-0067977-T01-IM7	SOMATIC	XIAP	XIAP	X	X	123019795	123029504	Exon 2 of XIAP(+)	Intron of XIAP(+):3Kb after exon 5	GRCh37	DUPLICATION	XIAP (NM_001167) rearrangement: c.283_c.1099+2881dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9709	60	0	118	10	122
P-0067978-T01-IM7	SOMATIC	SETD2	SETD2	3	3	8318000	47058629	3-UTR of LMCD1-AS1(-):225Kb after coding stop	Exon 21 of SETD2(-)	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement: c.7649:SETD2_chr3:g.8318000inv	PRECISE		MANUAL_OK	3to3	-	38740629	60	0	10	10	10
P-0067978-T01-IM7	SOMATIC	TGFBR1	TGFBR1	9	9	101894870	101897761	Exon 3 of TGFBR1(+)	Intron of TGFBR1(+):2Kb before exon 4	GRCh37	DELETION	TGFBR1 (NM_004612) rearrangement: c.423_c.575-2380del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2891	60	0	10	10	10
P-0067981-T01-IM7	SOMATIC	SESN2	SESN2	14	1	104680893	28600471	IGR: 76Kb before KIF26A(+)	Intron of SESN2(+):79bp before exon 7	GRCh37	TRANSLOCATION	SESN2 (NM_031459) rearrangement: t(1;14)(p35.3;q32.33)(chr1:g.28600471::chr14:g.104680893)	PRECISE		MANUAL_OK	3to5	-	0	60	0	34	10	34
P-0068016-T01-IM7	SOMATIC	PTEN	PTEN	10	10	89623506	89628453	5-UTR of PTEN(+):720bp before coding start	Intron of PTEN(+):4Kb after exon 1	GRCh37	DELETION	PTEN (NM_000314) rearrangement: c.79+4148:PTEN_chr10:g.89623506del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	4947	55	0	6	10	6
P-0068020-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47161860	84056040	Exon 3 of SETD2(-)	IGR: 632Kb before LINC00971(-)	GRCh37	INVERSION	SETD2 (NM_014159) rearrangement: c.4266:SETD2_chr3:g.84056040inv	PRECISE		MANUAL_OK	5to5	-	36894180	60	0	6	10	7
P-0068033-T01-IM7	SOMATIC	FGFR2	BICC1	10	10	60421412	123239673	Intron of BICC1(+):40Kb before exon 3	Intron of FGFR2(-):138bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2302-138:FGFR2_c.238-40422:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62818261	60	0	28	10	38
P-0068036-T01-IM7	SOMATIC	KLF5	KLF5	13	13	73608914	73636377	IGR: 20Kb before KLF5(+)	Exon 2 of KLF5(+)	GRCh37	DELETION	KLF5 (NM_001730) rearrangement: c.640:KLF5_chr13:g.73608914del	PRECISE		MANUAL_OK	3to5	-	27463	60	0	6	10	7
P-0068038-T01-IM7	SOMATIC	SMARCE1	SMARCE1	17	17	38792722	38794095	Exon 6 of SMARCE1(-)	Intron of SMARCE1(-):271bp before exon 5	GRCh37	INVERSION	SMARCE1 (NM_003079) rearrangement: c.157-271_c.294inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1373	60	0	21	10	25
P-0068039-T01-IM7	SOMATIC	NAB2	NAB2	12	12	57486363	57487838	Exon 3 of NAB2(+)	Intron of NAB2(+):457bp after exon 6	GRCh37	DELETION	NAB2 (NM_005967) rearrangement: c.1090_c.1468+457del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1475	60	0	34	10	36
P-0068040-T01-IM7	SOMATIC	ARHGAP35	ARHGAP35	19	19	47425126	47426494	Exon 1 of ARHGAP35(+)	Intron of ARHGAP35(+):881bp after exon 1	GRCh37	DELETION	ARHGAP35 (NM_004491) rearrangement: c.3194_c.3681+881del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1368	43	0	55	10	58
P-0068069-T01-IM7	SOMATIC	APC	APC	5	5	112175235	112178204	Exon 16 of APC(+)	Exon 16 of APC(+)	GRCh37	DELETION	APC (NM_000038) rearrangement: c.3944_c.6913del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2969	60	0	60	10	65
P-0068085-T01-IM7	SOMATIC	ATR	ATR	X	3	11103748	142272189	IGR: 26Kb before HCCS(+)	Exon 13 of ATR(-)	GRCh37	TRANSLOCATION	ATR (NM_001184) rearrangement: t(3;X)(q23;p22.2)(chr3:g.142272189::chrX:g.11103748)	PRECISE		MANUAL_OK	3to5	-	0	60	0	6	10	6
P-0068087-T01-IM7	SOMATIC	STK11	STK11	19	19	1207048	1209666	Exon 1 of STK11(+)	Intron of STK11(+):2Kb after exon 1	GRCh37	INVERSION	STK11 (NM_000455) rearrangement: c.136_c.290+2464inv	PRECISE		MANUAL_OK	5to5	-	2618	60	0	82	10	99
P-0068088-T01-IM7	SOMATIC	AKT1	AKT1	14	14	105069134	105236858	Intron of TMEM179(-):2Kb after exon 1	Intron of AKT1(-):101bp before exon 14	GRCh37	DUPLICATION	AKT1 (NM_001014431) rearrangement: c.1364-101:AKT1_chr14:g.105069134dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {TMEM179:AKT1}	167724	60	0	5	0	5
P-0068090-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120460170	145108713	Intron of NOTCH2(-):117bp after exon 33	Intron of NBPF20(+):205Kb before exon 54	GRCh37	INVERSION	NOTCH2 (NM_024408) rearrangement: c.6027+118:NOTCH2_chr1:g.145108713inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {NOTCH2:NBPF20}	24648543	60	0	8	10	10
P-0068090-T01-IM7	SOMATIC	FOXA1	FOXA1	14	14	38061028	38194734	Exon 2 of FOXA1(-)	IGR: 136Kb before FOXA1(-)	GRCh37	DELETION	FOXA1 (NM_004496) rearrangement: c.961:FOXA1_chr14:g.38194734del	PRECISE		MANUAL_OK	3to5	-	133706	60	0	21	10	21
P-0068093-T01-IM7	SOMATIC	TET1	TET1	19	10	40097514	70411820	Intron of LGALS13(+):348bp before exon 4	Intron of TET1(+):127bp after exon 5	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(10;19)(q21.3;q13.2)(chr10:g.70411820::chr19:g.40097514)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	28	10	28
P-0068097-T01-IM7	SOMATIC	INSR	INSR	19	19	7142932	7149955	Exon 12 of INSR(-)	Intron of INSR(-):552bp after exon 11	GRCh37	DUPLICATION	INSR (NM_000208) rearrangement: c.2267+553_c.2437dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7023	60	0	6	10	7
P-0068097-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	16	42878895	3664384	Intron of TMPRSS2(-):981bp after exon 1	Promoter of SLX4(-):33Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(16;21)(p13.3;q22.3)(chr16:g.3664384::chr21:g.42878895)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SLX4:TMPRSS2}	0	60	0	14	10	15
P-0068097-T01-IM7	SOMATIC	DROSHA	DROSHA	5	5	31472187	31480738	Exon 16 of DROSHA(-)	Intron of DROSHA(-):3Kb after exon 15	GRCh37	DUPLICATION	DROSHA (NM_013235) rearrangement: c.2071+2923_c.2224dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8551	60	0	18	10	19
P-0068097-T01-IM7	SOMATIC	NBN	NBN	8	8	90955565	90970643	Exon 14 of NBN(-)	Intron of NBN(-):309bp after exon 9	GRCh37	DUPLICATION	NBN (NM_002485) rearrangement: c.1124+310_c.2100dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	15078	60	0	8	7	8
P-0068118-T01-IM7	SOMATIC	NOTCH1	EGFL7	9	9	139410166	139565586	Exon 11 of NOTCH1(-)	Intron of EGFL7(+):120bp after exon 7	GRCh37	DELETION	NOTCH1 (NM_017617) - EGFL7 (NM_201446) rearrangement: c.1672:NOTCH1_c.636+120:EGFL7del	PRECISE		MANUAL_OK	3to5	-	155420	22	0	7	10	35
P-0068119-T01-IM7	SOMATIC	NUDC	ARID1A	1	1	27097437	27267840	Intron of ARID1A(+):172bp before exon 12	Intron of NUDC(+):107bp before exon 3	GRCh37	DUPLICATION	NUDC (NM_006600) - ARID1A (NM_006015) rearrangement: c.160-108:NUDC_c.3199-173:ARID1Adup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {NUDC:ARID1A}	170403	60	0	7	6	7
P-0068121-T01-IM7	SOMATIC	ATM	ATM	11	11	106162816	108165569	IGR: 41Kb before LOC101928535(+)	Intron of ATM(+):84bp before exon 32	GRCh37	DELETION	ATM (NM_000051) rearrangement: c.4777-85:ATM_chr11:g.106162816del	PRECISE		MANUAL_OK	3to5	-	2002753	60	0	41	10	43
P-0068126-T01-IM7	SOMATIC	FOXF1	FOXF1	16	16	86544597	88191878	Exon 1 of FOXF1(+)	IGR: 36Kb before LOC101928880(+)	GRCh37	DELETION	FOXF1 (NM_001451) rearrangement: c.422:FOXF1_chr16:88191878del	PRECISE		MANUAL_OK	3to5	-	1647281	27	0	8	10	40
P-0068171-T01-IM7	SOMATIC	NF1	NF1	17	17	27964804	29685494	Intron of SSH2(-):984bp before exon 14	Intron of NF1(+):3bp before exon 54	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.7971-4:NF1_chr17:g.27964804del	PRECISE		MANUAL_OK	3to5	-	1720690	60	0	4	6	4
P-0068173-T01-IM7	SOMATIC	CUL1	BRAF	7	7	140491990	148457779	Intron of BRAF(-):2Kb after exon 8	Intron of CUL1(+):191bp after exon 7	GRCh37	INVERSION	CUL1 (NM_003592) - BRAF (NM_004333) fusion: c.789+191:CUL1_c.1140+2118:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CUL1:BRAF}	7965789	60	0	43	10	43
P-0068184-T01-IM7	SOMATIC	CARM1	WWOX	19	16	11031798	78378199	Exon 14 of CARM1(+)	Intron of WWOX(+):43Kb before exon 6	GRCh37	TRANSLOCATION	CARM1 (NM_199141) - WWOX (NM_016373) rearrangement: t(16;19)(q23.1;p13.2)(chr16:g.78378199::chr19:g.11031798)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CARM1:WWOX}	0	60	0	34	0	36
P-0068184-T01-IM7	SOMATIC	ZNF536	SMARCA4	19	19	11141261	31013502	Intron of SMARCA4(+):144bp before exon 25	Intron of ZNF536(+):12Kb before exon 3	GRCh37	DUPLICATION	ZNF536 (NM_014717) - SMARCA4 (NM_003072) rearrangement: c.2171-12252:ZNF536_c.3383-145:SMARCA4dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {ZNF536:SMARCA4}	19872241	60	0	13	10	13
P-0068213-T01-IM7	SOMATIC	ERBB2	ERBB2	17	17	37819559	37863413	3-UTR of STARD3(+):10Kb after coding stop	Intron of ERBB2(+):19bp after exon 2	GRCh37	INVERSION	ERBB2 (NM_004448) rearrangement: c.225+19:ERBB2_chr17:g.37819559inv	PRECISE		MANUAL_OK	3to3	-	43854	60	0	2	8	3
P-0068214-T01-IM7	SOMATIC	NSD1	NSD1	5	5	176562630	176963275	Exon 2 of NSD1(+)	Intron of FAM193B(-):83bp after exon 4	GRCh37	DELETION	NSD1 (NM_022455) rearrangement: c.526:NSD1_chr5:g.176963275del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	400645	60	0	25	10	26
P-0068215-T01-IM7	SOMATIC	KIT	KIT	4	4	55594236	70302524	Exon 13 of KIT(+)	IGR: 43Kb before UGT2B4(-)	GRCh37	INVERSION	KIT (NM_000222) rearrangement: c.1939:KIT_chr4:g.70302524inv	PRECISE		MANUAL_OK	5to5	-	14708288	44	0	3	10	4
P-0068217-T01-IM7	SOMATIC	VHL	VHL	3	3	10183653	17793134	Exon 1 of VHL(+)	IGR: 211Kb before LOC339862(+)	GRCh37	DELETION	VHL (NM_000551) rearrangement: c.122:VHL_chr3:g.17793134del	PRECISE		MANUAL_OK	3to5	-	7609481	39	0	10	10	15
P-0068239-T01-IM7	SOMATIC	FH	FH	1	1	241667487	241669551	Exon 7 of FH(-)	Intron of FH(-):83bp before exon 6	GRCh37	INVERSION	FH (NM_000143) rearrangement: c.739-83_c.963inv	PRECISE		MANUAL_OK	3to3	-	2064	60	0	5	10	5
P-0068239-T01-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	178391406	185184749	3-UTR of KCNMB2-AS1(-):187Kb after coding stop	Exon 10 of MAP3K13(+)	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.1641:MAP3K13_chr3:g.178391406del	PRECISE		MANUAL_OK	3to5	-	6793343	60	0	13	10	13
P-0068239-T01-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	181099691	185200175	5-UTR of SOX2-OT(+):360Kb before coding start	Exon 14 of MAP3K13(+)	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.2832:MAP3K13_chr3:g.181099691del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SOX2-OT:MAP3K13}	4100484	60	0	18	10	18
P-0068239-T01-IM7	SOMATIC	ATRX	ATRX	X	X	75662214	76938883	IGR: 14Kb before MAGEE1(+)	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.1865:ATRX_chrX:g.75662214inv	PRECISE		MANUAL_OK	3to3	-	1276669	60	0	123	10	122
P-0068241-T01-IM7	SOMATIC	STK40	STK40	1	1	36818798	36821150	Intron of STK40(-):1Kb after exon 7	Intron of STK40(-):116bp before exon 6	GRCh37	DUPLICATION	STK40 (NM_032017) rearrangement: c.343-116_c.623+1167dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	2352	60	0	12	10	12
P-0068241-T01-IM7	SOMATIC	ITM2B	RB1	13	13	48820372	48930691	Intron of ITM2B(+):8Kb before exon 2	Intron of RB1(+):3Kb before exon 7	GRCh37	DELETION	ITM2B (NM_021999) - RB1 (NM_000321) rearrangement: c.118-7572:ITM2B_c.608-3462:RB1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ITM2B:RB1}	110319	60	0	18	10	18
P-0068241-T01-IM7	SOMATIC	EP300	EP300	22	22	41563638	41572777	Intron of EP300(+):814bp before exon 24	Exon 31 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.3875-815_c.5062dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	9139	60	0	8	10	8
P-0068260-T01-IM7	SOMATIC	ATR	ATR	3	3	142268503	144190679	Exon 15 of ATR(-)	IGR: 499Kb before C3orf58(+)	GRCh37	DELETION	ATR (NM_001184) rearrangement: c.2989:ATR_chr3:g.144190679del	PRECISE		MANUAL_OK	3to5	-	1922176	60	0	8	10	8
P-0068260-T01-IM7	SOMATIC	RBMS3	BRAF	7	3	140482707	30030473	Intron of BRAF(-):113bp after exon 10	Intron of RBMS3(+):759bp after exon 12	GRCh37	TRANSLOCATION	RBMS3 (NM_001003793) - BRAF (NM_004333) fusion: t(3;7)(p24.1;q34)(chr3:g.30030473::chr7:g.140482707)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RBMS3:BRAF}	0	60	0	9	10	9
P-0068261-T01-IM7	SOMATIC	RB1	RB1	13	13	48916842	54812747	Exon 3 of RB1(+)	IGR: 73Kb before MIR1297(-)	GRCh37	INVERSION	RB1 (NM_000321) rearrangement: c.372:RB1_chr13:g.54812747inv	IMPPRECISE		MANUAL_OK	3to3	-	5895905	60	0	9	0	9
P-0068262-T01-IM7	SOMATIC	DNMT1	COL5A3	19	19	10092455	10265640	Intron of COL5A3(-):285bp after exon 32	Exon 19 of DNMT1(-)	GRCh37	DELETION	DNMT1 (NM_001379) - COL5A3 (NM_015719) rearrangement: c.1537:DNMT1_c.2460+286:COL5A3del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {DNMT1:COL5A3}	173185	60	0	111	10	113
P-0068264-T01-IM7	SOMATIC	FGFR3	FGFR3	6	4	36275815	1807957	3-UTR of PNPLA1(+):38Kb after coding stop	Intron of FGFR3(+):26bp before exon 15	GRCh37	TRANSLOCATION	FGFR3 (NM_000142) rearrangement: t(4;6)(p16.3;p21.31)(chr4:g.1807957::chr6:g.36275815)	PRECISE		MANUAL_OK	3to3	-	0	60	0	53	10	51
P-0068270-T01-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114903792	114923376	Intron of TCF7L2(+):8bp after exon 7	Intron of TCF7L2(+):2Kb before exon 14	GRCh37	DUPLICATION	TCF7L2 (NM_001146274) rearrangement: c.788+8_c.1392-1938dup	PRECISE		MANUAL_OK	5to3	Duplication of 6 exons : in frame	19584	60	0	4	10	4
P-0068281-T01-IM7	SOMATIC	KMT2C	KMT2C	7	7	81405691	151841968	IGR: 25Kb before HGF(-)	Intron of KMT2C(-):2bp before exon 55	GRCh37	INVERSION	KMT2C (NM_170606) rearrangement: c.14175-2:KMT2C_chr7:g.81405691inv	PRECISE		MANUAL_OK	5to5	-	70436277	60	0	6	10	6
P-0068283-T01-IM7	SOMATIC	CDKN2A	CDKN2A	17	9	76414880	21968140	Intron of PGS1(+):746bp before exon 9	3-UTR of CDKN2A(-):6Kb after coding stop	GRCh37	TRANSLOCATION	CDKN2A (NM_000077) rearrangement: t(9;17)(p21.3;q25.3)(chr9:g.21968140::chr17:g.76414880)	PRECISE		MANUAL_OK	3to5	-	0	60	0	22	10	22
P-0068289-T01-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098714	178102372	Intron of NFE2L2(-):18bp after exon 2	Intron of NFE2L2(-):3Kb before exon 2	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.46-3373_c.312+19del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	3658	39	0	21	10	26
P-0068289-T01-IM7	SOMATIC	AR	ABLIM1	X	10	66941798	116193983	Exon 6 of AR(+)	3-UTR of ABLIM1(-):2Kb after coding stop	GRCh37	TRANSLOCATION	AR (NM_000044) rearrangement: t(10;X)(q25.3;q12)(chr10:g.116193983::chrX:g.66941798)	PRECISE		MANUAL_OK	3to3	-	0	60	0	23	10	23
P-0068290-T01-IM7	SOMATIC	AXIN1	AXIN1	16	16	306825	341283	Intron of ITFG3(+):2Kb after exon 3	Exon 9 of AXIN1(-)	GRCh37	DELETION	AXIN1 (NM_003502) rearrangement: c.2201:AXIN1_chr16:g.306825del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	34458	49	0	6	10	7
P-0068290-T01-IM7	SOMATIC	TP53	TP53	17	17	7577162	7580547	Intron of TP53(-):7bp before exon 8	5-UTR of TP53(-):8Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.783-7:TP53_chr17:g.7580547del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3385	60	0	12	10	13
P-0068291-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	69971870	78820111	IGR: 46Kb before LOC102723505(-)	Intron of RPTOR(+):161bp before exon 11	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.1213-162:RPTOR_chr17:g.69971870del	PRECISE		MANUAL_OK	3to5	-	8848241	60	0	13	10	13
P-0068323-T01-IM7	SOMATIC	BLM	PDXDC1	16	15	15089602	91352351	Intron of PDXDC1(+):2Kb before exon 2	Intron of BLM(+):15bp before exon 20	GRCh37	TRANSLOCATION	BLM (NM_000057) - PDXDC1 (NM_015027) rearrangement: t(15;16)(q26.1;p13.11)(chr15:g.91352351::chr16:g.15089602)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {BLM:PDXDC1}	0	27	0	13	10	15
P-0068323-T01-IM7	SOMATIC	CHEK2	CHEK2	22	22	29081235	29092005	Promoter of CHEK2(-):2Kb from tx start	Intron of CHEK2(-):144bp before exon 11	GRCh37	DUPLICATION	CHEK2 (NM_007194) rearrangement: c.1096-144:CHEK2_chr22:g.29081235dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	10770	38	0	8	10	17
P-0068323-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	4	139397389	186674454	Intron of NOTCH1(-):244bp after exon 27	5-UTR of SORBS2(-):166Kb before coding start	GRCh37	TRANSLOCATION	NOTCH1 (NM_017617) rearrangement: t(4;9)(q35.1;q34.3)(chr4:g.186674454::chr9:g.139397389)	PRECISE		MANUAL_OK	3to5	Transcript Fusion {SORBS2:NOTCH1}	0	60	0	17	10	17
P-0068325-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41266142	41266667	Exon 3 of CTNNB1(+)	Exon 4 of CTNNB1(+)	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.139_c.464del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	525	60	0	63	0	66
P-0067222-T02-IM7	SOMATIC	FLT4	FLT4	5	5	180048777	180267345	Exon 13 of FLT4(-)	IGR: 7Kb before ZFP62(-)	GRCh37	INVERSION	FLT4 (NM_182925) rearrangement: c.1785:FLT4_chr5:g.180267345inv	PRECISE		MANUAL_OK	5to5	-	218568	60	0	96	10	113
P-0067890-T02-IM7	SOMATIC	SUZ12	LARS2	17	3	30322662	45446233	Exon 14 of SUZ12(+)	Intron of LARS2(+):4Kb after exon 4	GRCh37	TRANSLOCATION	SUZ12 (NM_015355) - LARS2 (NM_015340) rearrangement: t(3;17)(p21.31;q11.2)(chr3:g.45446233::chr17:g.30322662)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SUZ12:LARS2}	0	56	0	35	10	41
P-0067890-T02-IM7	SOMATIC	PIK3R1	PIK3R1	5	5	67584555	67591105	Intron of PIK3R1(+):4Kb before exon 8	Exon 13 of PIK3R1(+)	GRCh37	DUPLICATION	PIK3R1 (NM_181523) rearrangement: c.917-3532_c.1698dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	6550	60	0	31	10	33
P-0068238-T01-IM7	SOMATIC	VTCN1	NRG1	8	1	32364219	117699192	Intron of NRG1(+):89Kb before exon 2	Intron of VTCN1(-):3bp after exon 3	GRCh37	TRANSLOCATION	VTCN1 (NM_024626) - NRG1 (NM_013956) rearrangement: t(1;8)(p13.1;p12)(chr1:g.117699192::chr8:g.32364219)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {VTCN1:NRG1}	0	48	0	48	10	72
P-0068364-T01-IM7	SOMATIC	NUFIP2	MAP3K14	17	17	27603397	43350943	Intron of NUFIP2(-):9Kb before exon 3	Exon 9 of MAP3K14(-)	GRCh37	DUPLICATION	NUFIP2 (NM_020772) - MAP3K14 (NM_003954) rearrangement: c.2003-8849:NUFIP2_c.1583:MAP3K14dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NUFIP2:MAP3K14}	15747546	23	0	11	0	20
P-0068364-T01-IM7	SOMATIC	PTCH1	PTCH1	9	1	98222019	189883519	Exon 17 of PTCH1(-)	IGR: 183Kb before BRINP3(-)	GRCh37	TRANSLOCATION	PTCH1 (NM_000264) rearrangement: t(1;9)(q31.1;q22.32)(chr1:g.189883519::chr9:g.98222019)	PRECISE		MANUAL_OK	3to3	-	0	60	0	13	10	13
P-0068367-T01-IM7	SOMATIC	FGFR3	FGFR3	4	4	1803821	1807420	Intron of FGFR3(+):69bp after exon 7	Intron of FGFR3(+):24bp after exon 12	GRCh37	DELETION	FGFR3 (NM_000142) rearrangement: c.930+69_c.1645+24del	PRECISE		MANUAL_OK	3to5	Deletion of 5 exons : out of frame	3599	60	0	15	10	15
P-0068373-T01-IM7	SOMATIC	TERT	TERT	5	5	892882	1295174	Promoter of TRIP13(+):86bp from tx start	Promoter of TERT(-):42Kb from tx start	GRCh37	DUPLICATION	TERT (NM_198253) rearrangement: chr5:g.892882_chr5:g.1295174dup	PRECISE		MANUAL_OK	5to3	-	402292	60	0	10	10	10
P-0007816-T02-IM7	SOMATIC	PAK1	PAK1	11	11	77070088	80433785	Intron of PAK1(-):26bp before exon 6	IGR: 28Kb before LOC101928944(-)	GRCh37	DELETION	PAK1 (NM_002576) rearrangement: c.478-26:PAK1_chr11:g.80433785del	PRECISE		MANUAL_OK	3to5	-	3363697	60	0	18	10	32
P-0007816-T02-IM7	SOMATIC	YAP1	YAP1	11	7	102020105	87375087	Intron of YAP1(+):13Kb before exon 3	Intron of RUNDC3B(+):4Kb after exon 7	GRCh37	TRANSLOCATION	YAP1 (NM_001130145) rearrangement: t(7;11)(q21.12;q22.1)(chr7:g.87375087::chr11:g.102020105)	PRECISE		MANUAL_OK	5to5	-	0	60	0	7	10	8
P-0007816-T02-IM7	SOMATIC	DNMT1	DNMT1	19	7	10262384	120524930	Intron of DNMT1(-):41bp after exon 22	IGR: 66Kb before ING3(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(7;19)(q31.31;p13.2)(chr7:g.120524930::chr19:g.10262384)	PRECISE		MANUAL_OK	3to5	-	0	60	0	19	10	19
P-0063354-T02-IM7	SOMATIC	TET1	C10orf11	10	10	70446364	77592560	Exon 11 of TET1(+)	Intron of C10orf11(+):50Kb after exon 1	GRCh37	DELETION	TET1 (NM_030625) - C10orf11 (NM_032024) rearrangement: c.5304:TET1_c.47+49780:C10orf11del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TET1:C10orf11}	7146196	60	0	6	7	6
P-0063354-T02-IM7	SOMATIC	LTA4H	ARID1A	12	1	96426268	27101098	Intron of LTA4H(-):3Kb before exon 2	Exon 18 of ARID1A(+)	GRCh37	TRANSLOCATION	LTA4H (NM_000895) - ARID1A (NM_006015) rearrangement: t(1;12)(p36.11;q23.1)(chr1:g.27101098::chr12:g.96426268)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {LTA4H:ARID1A}	0	60	0	15	10	16
P-0066259-T01-IM7	SOMATIC	DNMT1	DNMT1	19	19	10262091	10264931	Exon 23 of DNMT1(-)	Intron of DNMT1(-):37bp after exon 21	GRCh37	INVERSION	DNMT1 (NM_001379) rearrangement: c.1971+38_c.2200inv	PRECISE		MANUAL_OK	3to3	-	2840	60	0	35	10	35
P-0067403-T02-IM7	SOMATIC	SPEN	SPEN	1	1	16246004	16248025	Exon 8 of SPEN(+)	Intron of SPEN(+):547bp after exon 9	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.1627_c.1749+547inv	IMPPRECISE		MANUAL_OK	5to5	-	2021	60	0	11	0	12
P-0068435-T01-IM7	SOMATIC	SETDB1	VANGL1	1	1	116196334	150915009	Intron of VANGL1(+):2Kb after exon 2	Intron of SETDB1(+):29bp before exon 6	GRCh37	DUPLICATION	SETDB1 (NM_001145415) - VANGL1 (NM_138959) rearrangement: c.548-30:SETDB1_c.71+2229:VANGL1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {SETDB1:VANGL1}	34718675	60	0	6	10	6
P-0068443-T01-IM7	SOMATIC	TP53	TP53	17	17	7578256	7581857	Exon 6 of TP53(-)	5-UTR of TP53(-):9Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.593:TP53_chr17:g.7581857del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3601	46	0	27	10	29
P-0068449-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	19	42851201	53638525	Exon 7 of TMPRSS2(-)	Promoter of ZNF415(-):27Kb from tx start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(19;21)(q13.42;q22.3)(chr19:g.53638525::chr21:g.42851201)	PRECISE		MANUAL_OK	3to3	-	0	60	0	30	10	34
P-0068449-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56151011	56177270	Intron of MAP3K1(+):1Kb before exon 2	Intron of MAP3K1(+):126bp before exon 14	GRCh37	DELETION	MAP3K1 (NM_005921) rearrangement: c.483-1416_c.2370-127del	PRECISE		MANUAL_OK	3to5	Deletion of 12 exons : in frame	26259	60	0	3	10	3
P-0068451-T01-IM7	SOMATIC	SPEN	SPEN	1	1	16137394	16255140	IGR: 4Kb before UQCRHL(-)	Exon 11 of SPEN(+)	GRCh37	INVERSION	SPEN (NM_015001) rearrangement: c.2405:SPEN_chr1:g.16137394inv	PRECISE		MANUAL_OK	3to3	-	117746	60	0	33	10	33
P-0068451-T01-IM7	SOMATIC	TRIM24	BRAF	7	7	138199097	140482765	Intron of TRIM24(+):859bp before exon 3	Intron of BRAF(-):55bp after exon 10	GRCh37	INVERSION	TRIM24 (NM_015905) - BRAF (NM_004333) fusion: c.484-860:TRIM24_c.1314+56:BRAFinv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {TRIM24:BRAF}	2283668	60	0	5	0	5
P-0068453-T02-IM7	SOMATIC	RAF1	RAF1	3	3	12627289	12697793	Exon 14 of RAF1(-)	5-UTR of RAF1(-):72Kb before coding start	GRCh37	DELETION	RAF1 (NM_002880) rearrangement: c.1427:RAF1_chr3:g.12697793del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	70504	60	0	6	8	6
P-0006948-T02-IM7	SOMATIC	NCOR1	NCOR1	17	4	16075183	45047621	Exon 4 of NCOR1(-)	IGR: 344Kb before GNPDA2(-)	GRCh37	TRANSLOCATION	NCOR1 (NM_006311) rearrangement: t(4;17)(p12;p11.2)(chr4:g.45047621::chr17:g.16075183)	PRECISE		MANUAL_OK	3to5	-	0	28	0	26	10	30
P-0049135-T07-IM7	SOMATIC	FGFR2	BICC1	10	10	60425544	123239791	Intron of BICC1(+):36Kb before exon 3	Intron of FGFR2(-):256bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2302-256:FGFR2_c.238-36290:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62814247	60	0	10	10	14
P-0067938-T02-IM7	SOMATIC	PGR	PGR	11	11	100999010	101004603	Exon 1 of PGR(-)	5-UTR of LOC101054525(+):25Kb before coding start	GRCh37	INVERSION	PGR (NM_000926) rearrangement: c.792:PGR_chr11:g.101004603inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {LOC101054525:PGR}	5593	60	0	82	10	82
P-0068155-T02-IM7	SOMATIC	ALK	ALK	2	2	29448072	112450867	Intron of ALK(-):254bp after exon 19	IGR: 74Kb before ANAPC1(-)	GRCh37	INVERSION	ALK (NM_004304) rearrangement: c.3172+255:ALK_chr2:g.112450867inv	PRECISE		MANUAL_OK	3to3	-	83002795	60	0	43	10	42
P-0068193-T01-IM7	SOMATIC	ANKRD11	ANKRD11	16	16	89329011	89352435	IGR: 5Kb before ANKRD11(-)	Intron of ANKRD11(-):11bp after exon 8	GRCh37	INVERSION	ANKRD11 (NM_013275) rearrangement: c.892+12:ANKRD11_chr16:g.89329011inv	PRECISE		MANUAL_OK	3to3	-	23424	60	0	12	10	11
P-0068194-T01-IM7	SOMATIC	SND1	BRAF	7	7	127379140	140489175	Intron of SND1(+):18Kb after exon 10	Intron of BRAF(-):2Kb before exon 9	GRCh37	INVERSION	SND1 (NM_014390) - BRAF (NM_004333) fusion: c.1152+17686:SND1_c.1141-1791:BRAFinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {SND1:BRAF}	13110035	60	0	14	10	13
P-0068195-T01-IM7	SOMATIC	CBL	CBL	11	11	119148597	119150854	Intron of CBL(+):43bp after exon 7	Intron of CBL(+):1Kb after exon 9	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.1095+43_c.1431+1431del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	2257	60	0	66	10	68
P-0068196-T01-IM7	SOMATIC	MPL	MPL	1	1	43804905	58502603	Intron of MPL(+):36bp before exon 4	5-UTR of DAB1(-):1Mb before coding start	GRCh37	DELETION	MPL (NM_005373) rearrangement: c.392-37:MPL_chr1:g.58502603del	IMPPRECISE		MANUAL_OK	3to5	Antisense Fusion	14697698	60	0	80	0	778
P-0068196-T01-IM7	SOMATIC	MDM2	AGMO	12	7	69205743	15304968	Intron of MDM2(+):2Kb before exon 3	Intron of AGMO(-):64Kb before exon 13	GRCh37	TRANSLOCATION	MDM2 (NM_002392) - AGMO (NM_001004320) rearrangement: t(7;12)(p21.2;q15)(chr7:g.15304968::chr12:g.69205743)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {MDM2:AGMO}	0	60	0	8	0	8
P-0068469-T02-IM7	SOMATIC	SMAD2	SMAD2	18	9	45377631	38487967	Intron of SMAD2(-):13bp after exon 7	IGR: 53Kb before FAM95C(-)	GRCh37	TRANSLOCATION	SMAD2 (NM_001003652) rearrangement: t(9;18)(p13.1;q21.1)(chr9:g.38487967::chr18:g.45377631)	PRECISE		MANUAL_OK	5to5	-	0	60	0	26	10	30
P-0068469-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	9	15296164	26072624	Exon 14 of NOTCH3(-)	5-UTR of LOC100506422(+):22Kb before coding start	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(9;19)(p21.2;p13.12)(chr9:g.26072624::chr19:g.15296164)	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NOTCH3:LOC100506422}	0	44	0	30	10	38
P-0068474-T01-IM7	SOMATIC	FGFR3	MAEA	4	4	1313709	1808895	Intron of MAEA(+):2Kb before exon 4	Exon 18 of FGFR3(+)	GRCh37	DUPLICATION	FGFR3 (NM_000142) - MAEA (NM_001017405) fusion: c.2327:FGFR3_c.457-2460:MAEAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {FGFR3:MAEA}	495186	42	0	4	10	7
P-0068500-T01-IM7	SOMATIC	CCDC6	RET	10	10	43610322	61654590	Intron of RET(+):138bp after exon 11	Intron of CCDC6(-):11Kb after exon 1	GRCh37	INVERSION	CCDC6 (NM_005436) - RET (NM_020975) fusion: c.303+11290:CCDC6_c.2136+138:RETinv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {CCDC6:RET}	18044268	60	0	31	10	36
P-0068502-T01-IM7	SOMATIC	BAHCC1	MAP3K14	17	17	43366804	79380798	Intron of MAP3K14(-):133bp before exon 3	Intron of BAHCC1(+):7Kb after exon 1	GRCh37	INVERSION	BAHCC1 (NM_001080519) - MAP3K14 (NM_003954) rearrangement: c.177+7082:BAHCC1_c.257-133:MAP3K14inv	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {BAHCC1:MAP3K14}	36013994	60	0	7	0	6
P-0065517-T02-IM7	SOMATIC	ARID1A	ARID1A	1	1	27105097	27105863	Intron of ARID1A(+):416bp before exon 20	Exon 20 of ARID1A(+)	GRCh37	DELETION	ARID1A (NM_006015) rearrangement: c.5125-417_c.5474del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	766	60	0	22	10	90
P-0065517-T02-IM7	SOMATIC	SPOP	SPOP	17	17	47672459	47679310	IGR: 4Kb before SPOP(-)	Exon 9 of SPOP(-)	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: c.897:SPOP_chr17:g.47672459inv	PRECISE		MANUAL_OK	5to5	-	6851	60	0	48	10	56
P-0068481-T01-IM7	SOMATIC	POLE	POLE	12	9	133256742	131699307	Intron of POLE(-):21bp after exon 4	Intron of PHYHD1(+):525bp after exon 5	GRCh37	TRANSLOCATION	POLE (NM_006231) rearrangement: t(9;12)(q34.11;q24.33)(chr9:g.131699307::chr12:g.133256742)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	37	0	27	10	34
P-0068481-T01-IM7	SOMATIC	RB1	RB1	13	13	48954404	48956448	Intron of RB1(+):27bp after exon 16	Intron of RB1(+):869bp after exon 17	GRCh37	DUPLICATION	RB1 (NM_000321) rearrangement: c.1498+27_c.1695+869dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	2044	53	0	41	10	47
P-0068481-T01-IM7	SOMATIC	FBXO11	MSH6	2	2	48018216	48044638	Exon 2 of MSH6(+)	Intron of FBXO11(-):1Kb after exon 16	GRCh37	INVERSION	FBXO11 (NM_001190274) - MSH6 (NM_000179) rearrangement: c.2006+1280:FBXO11_c.411:MSH6inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {FBXO11:MSH6}	26422	60	0	46	10	57
P-0068493-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55196475	55221998	Intron of EGFR(+):14Kb before exon 2	Intron of EGFR(+):153bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-13504_c.889+153del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	25523	60	0	44	10	46
P-0068494-T01-IM7	SOMATIC	FN1	ROS1	6	2	117652028	216267900	Intron of ROS1(-):1Kb before exon 32	Intron of FN1(-):1Kb after exon 20	GRCh37	TRANSLOCATION	FN1 (NM_212482) - ROS1 (NM_002944) fusion: t(2;6)(q35;q22.1)(chr2:g.216267900::chr6:g.117652028)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FN1:ROS1}	0	58	0	5	10	5
P-0068477-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974501	22003638	Exon 1 of CDKN2A(-)	3-UTR of CDKN2B(-):2Kb after coding stop	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-3294:CDKN2A_chr9:g.22003638del	PRECISE		MANUAL_OK	3to5	-	29137	60	0	35	10	36
P-0068483-T01-IM7	SOMATIC	LRIG3	ROS1	12	6	59269495	117644742	Intron of LRIG3(-):731bp after exon 16	Intron of ROS1(-):752bp after exon 34	GRCh37	TRANSLOCATION	LRIG3 (NM_153377) - ROS1 (NM_002944) fusion: t(6;12)(q22.1;q14.1)(chr6:g.117644742::chr12:g.59269495)	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {LRIG3:ROS1}	0	52	0	41	10	49
P-0068498-T01-IM7	SOMATIC	RET	RET	10	10	35279532	43611864	IGR: 18Kb before CUL2(-)	Intron of RET(+):167bp before exon 12	GRCh37	INVERSION	RET (NM_020975) rearrangement: c.2137-168:RET_chr10:g.35279532inv	IMPPRECISE		MANUAL_OK	5to5	-	8332332	48	0	39	0	57
P-0068539-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39861512	42873570	Intron of ERG(-):9Kb after exon 1	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3454:TMPRSS2_c.18+8775:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3012058	60	0	34	10	34
P-0052289-T04-IM7	SOMATIC	IGF1R	IGF1R	15	15	98227189	99251353	IGR: 59Kb before LINC00923(-)	Intron of IGF1R(+):17bp after exon 2	GRCh37	DELETION	IGF1R (NM_000875) rearrangement: c.640+17:IGF1R_chr15:g.98227189del	PRECISE		MANUAL_OK	3to5	-	1024164	60	0	11	10	11
P-0054615-T03-IM7	SOMATIC	ETV6	ETV6	12	5	12037145	143717098	Intron of ETV6(+):233bp before exon 6	Intron of KCTD16(+):130Kb after exon 3	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(5;12)(q31.3;p13.2)(chr5:g.143717098::chr12:g.12037145)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	67	10	67
P-0059163-T05-IM7	SOMATIC	LIN9	PARP1	1	1	226487211	226556169	Intron of LIN9(-):2Kb after exon 2	Intron of PARP1(-):147bp before exon 16	GRCh37	DUPLICATION	LIN9 (NM_173083) - PARP1 (NM_001618) rearrangement: c.112+1663:LIN9_c.2155-147:PARP1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {LIN9:PARP1}	68958	60	0	15	10	13
P-0059163-T05-IM7	SOMATIC	AXIN2	AXIN2	17	17	63537754	63552097	Intron of AXIN2(-):79bp before exon 4	Intron of AXIN2(-):2Kb after exon 2	GRCh37	DELETION	AXIN2 (NM_004655) rearrangement: c.815+1827_c.957-79del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	14343	60	0	24	10	69
P-0059163-T05-IM7	SOMATIC	XPO1	XPO1	2	2	61742774	61753559	Intron of XPO1(-):7Kb after exon 4	Exon 3 of XPO1(-)	GRCh37	DELETION	XPO1 (NM_003400) rearrangement: c.224_c.301+6972del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	10785	60	0	36	10	85
P-0059209-T03-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4094514	4096259	Intron of MAP2K2(-):18bp before exon 10	Intron of MAP2K2(-):812bp before exon 9	GRCh37	DELETION	MAP2K2 (NM_030662) rearrangement: c.985-812_c.1047-18del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1745	60	0	6	7	6
P-0068570-T01-IM7	SOMATIC	EWSR1	ATF1	22	12	29686465	51205611	Intron of EWSR1(+):1Kb before exon 10	Intron of ATF1(+):2Kb before exon 5	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - ATF1 (NM_005171) fusion: t(12;22)(q13.12;q12.2)(chr12:g.51205611::chr22:g.29686465)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {EWSR1:ATF1}	0	60	0	38	10	38
P-0068574-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139408979	139412008	Exon 13 of NOTCH1(-)	Intron of NOTCH1(-):171bp before exon 9	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.1442-171_c.2190del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3029	60	0	22	10	24
P-0068605-T01-IM7	SOMATIC	RAD51B	RAD51B	14	14	68595074	68944441	Intron of RAD51B(+):164Kb before exon 8	Intron of RAD51B(+):9Kb after exon 10	GRCh37	DUPLICATION	RAD51B (NM_133509) rearrangement: c.757-163527_c.1036+9474dup	PRECISE		MANUAL_OK	5to3	Duplication of 3 exons : out of frame	349367	60	0	23	10	24
P-0068605-T01-IM7	SOMATIC	MAP3K14	MAP3K14	17	15	43344817	66596925	Exon 12 of MAP3K14(-)	Intron of DIS3L(+):2Kb before exon 3	GRCh37	TRANSLOCATION	MAP3K14 (NM_003954) rearrangement: t(15;17)(q22.31;q21.31)(chr15:g.66596925::chr17:g.43344817)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	25	10	28
P-0068605-T01-IM7	SOMATIC	MAP3K1	MAP3K1	5	5	56124056	56180879	Intron of MAP3K1(+):12Kb after exon 1	Intron of MAP3K1(+):226bp after exon 16	GRCh37	DUPLICATION	MAP3K1 (NM_005921) rearrangement: c.482+12174_c.3982+226dup	PRECISE		MANUAL_OK	5to3	Duplication of 15 exons : out of frame	56823	60	0	7	10	7
P-0068607-T01-IM7	SOMATIC	FGF19	FGF19	12	11	125083928	69514116	IGR: 178Kb before SCARB1(-)	Exon 3 of FGF19(-)	GRCh37	TRANSLOCATION	FGF19 (NM_005117) rearrangement: t(11;12)(q13.3;q24.31)(chr11:g.69514116::chr12:g.125083928)	PRECISE		MANUAL_OK	5to3	-	0	60	0	16	10	16
P-0068608-T01-IM7	SOMATIC	TP53	TP53	17	17	7561263	7590387	Promoter of ATP1B2(+):7Kb from tx start	5-UTR of TP53(-):17Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.*2050_c.-29+308	PRECISE		MANUAL_OK	3to5	Antisense Fusion	29124	60	0	21	10	21
P-0068608-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48603466	48604740	Intron of SMAD4(+):320bp after exon 11	Exon 12 of SMAD4(+)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.1447+320_c.1562del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1274	60	0	6	10	6
P-0068610-T01-IM7	SOMATIC	BABAM1	BABAM1	19	19	17370874	17384709	Intron of USHBP1(-):43bp before exon 5	Intron of BABAM1(+):3bp before exon 4	GRCh37	DELETION	BABAM1 (NM_001033549) rearrangement: c.345-4:BABAM1_chr19:g.17370874del	PRECISE		MANUAL_OK	3to5	-	13835	60	0	59	10	63
P-0065147-T03-IM7	SOMATIC	KEAP1	KEAP1	19	19	10600131	10604369	Intron of KEAP1(-):87bp before exon 5	Intron of KEAP1(-):1Kb before exon 3	GRCh37	DELETION	KEAP1 (NM_203500) rearrangement: c.640-1431_c.1532-87del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : out of frame	4238	39	0	97	10	101
P-0068553-T01-IM7	SOMATIC	RAB40C	PTPRT	20	16	41818103	644226	Intron of PTPRT(-):182bp after exon 1	Intron of RAB40C(+):4Kb after exon 1	GRCh37	TRANSLOCATION	RAB40C (NM_001172665) - PTPRT (NM_133170) rearrangement: t(16;20)(p13.3;q13.11)(chr16:g.644226::chr20:g.41818103)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {RAB40C:PTPRT}	0	60	0	10	10	10
P-0068573-T01-IM7	SOMATIC	FANCA	FANCA	16	8	89845458	101304571	Intron of FANCA(-):47bp before exon 19	5-UTR of RNF19A(-):34Kb before coding start	GRCh37	TRANSLOCATION	FANCA (NM_000135) rearrangement: t(8;16)(q22.2;q24.3)(chr8:g.101304571::chr16:g.89845458)	PRECISE		MANUAL_OK	3to3	-	0	60	0	48	10	48
P-0068573-T01-IM7	SOMATIC	TP53	TP53	17	17	7588081	7591527	5-UTR of TP53(-):15Kb before coding start	Promoter of TP53(-):20Kb from tx start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.-861_c.-29+2614	PRECISE		MANUAL_OK	3to5	Deletion within transcript	3446	60	0	77	10	83
P-0068573-T01-IM7	SOMATIC	NCOA3	NCOA3	20	20	45932845	46266528	Intron of ZMYND8(-):5Kb before exon 4	Intron of NCOA3(+):1bp after exon 13	GRCh37	DUPLICATION	NCOA3 (NM_181659) rearrangement: c.2512+1:NCOA3_chr20:g.45932845dup	PRECISE		MANUAL_OK	5to3	Antisense Fusion	333683	60	0	24	10	24
P-0068630-T01-IM7	SOMATIC	STAT5B	USP32	17	17	40364034	58403653	Exon 13 of STAT5B(-)	Intron of USP32(-):19Kb after exon 2	GRCh37	DUPLICATION	STAT5B (NM_012448) - USP32 (NM_032582) rearrangement: c.1648:STAT5B_c.186+19189:USP32dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {STAT5B:USP32}	18039619	43	0	3	10	4
P-0068632-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39875840	42875852	Intron of ERG(-):58Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+4025:TMPRSS2_c.40-58296:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000012	60	0	20	10	21
P-0068633-T01-IM7	SOMATIC	MAP3K14	MAP3K14	17	17	43351745	71142696	Intron of MAP3K14(-):85bp after exon 7	IGR: 18Kb before SSTR2(+)	GRCh37	INVERSION	MAP3K14 (NM_003954) rearrangement: c.1419+86:MAP3K14_chr17:g.71142696inv	PRECISE		MANUAL_OK	5to5	-	27790951	60	0	19	10	24
P-0068634-T01-IM7	SOMATIC	MGA	MGA	15	15	42027291	42052477	Intron of MGA(+):499bp after exon 12	Intron of MGA(+):43bp before exon 20	GRCh37	DELETION	MGA (NM_001164273) rearrangement: c.3916+499_c.7192-44del	PRECISE		MANUAL_OK	3to5	Deletion of 7 exons : out of frame	25186	60	0	18	10	18
P-0068637-T01-IM7	SOMATIC	JUN	JUN	1	1	59247684	59248621	3-UTR of JUN(-):62bp after coding stop	Exon 1 of JUN(-)	GRCh37	DELETION	JUN (NM_002228) rearrangement: c.122:JUN_chr1:g.59247684del	IMPPRECISE		MANUAL_OK	3to5	-	937	60	0	33	0	37
P-0068638-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	40025725	42874726	3-UTR of ERG(-):8Kb after coding stop	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) -ERG(NM_004449) fusion: c.56-4610:TMPRSS2_c.-150+7857:ERGdel	PRECISE		MANUAL_OK	3to5	-	2849001	60	0	41	10	42
P-0068638-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42843016	42867852	Intron of TMPRSS2(-):346bp before exon 11	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.127-1347_c.1187-346inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	24836	60	0	27	10	31
P-0068640-T01-IM7	SOMATIC	FGFR2	BICC1	10	10	60443330	123240444	Intron of BICC1(+):19Kb before exon 3	Intron of FGFR2(-):909bp before exon 18	GRCh37	INVERSION	FGFR2 (NM_000141) - BICC1 (NM_001080512) fusion: c.2302-909:FGFR2_c.238-18504:BICC1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {FGFR2:BICC1}	62797114	45	0	42	10	42
P-0068640-T01-IM7	SOMATIC	RUNX1	RUNX1	21	21	36164495	37286099	Exon 9 of RUNX1(-)	IGR: 41Kb before LOC101928269(-)	GRCh37	INVERSION	RUNX1 (NM_001754) rearrangement: c.1380:RUNX1_chr21:g.37286099inv	PRECISE		MANUAL_OK	3to3	-	1121604	60	0	4	5	4
P-0023357-T06-IM7	SOMATIC	TP53	TP53	17	17	7575662	7584559	Intron of TP53(-):1Kb after exon 9	5-UTR of TP53(-):12Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.993+1191:TP53_chr17:g.7584559inv	IMPPRECISE		MANUAL_OK	3to3	-	8897	41	0	50	0	58
P-0068227-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29683949	32415843	Intron of EWSR1(+):645bp before exon 9	Intron of WT1(-):2Kb before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32415843::chr22:g.29683949)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	16	10	16
P-0068239-T02-IM7	SOMATIC	FH	FH	1	1	241667487	241669551	Exon 7 of FH(-)	Intron of FH(-):83bp before exon 6	GRCh37	INVERSION	FH (NM_000143) rearrangement: c.739-83_c.963inv	PRECISE		MANUAL_OK	3to3	-	2064	60	0	22	10	23
P-0068239-T02-IM7	SOMATIC	NF1	NF1	17	17	29558019	32261180	Intron of NF1(+):76bp after exon 24	Intron of ASIC2(-):222Kb after exon 1	GRCh37	INVERSION	NF1 (NM_001042492) rearrangement: c.3197+76:NF1_chr17:g.32261180inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NF1:ASIC2}	2703161	60	0	2	5	3
P-0068239-T02-IM7	SOMATIC	MAP3K13	MAP3K13	3	3	181099691	185200175	5-UTR of SOX2-OT(+):360Kb before coding start	Exon 14 of MAP3K13(+)	GRCh37	DELETION	MAP3K13 (NM_004721) rearrangement: c.2832:MAP3K13_chr3:g.181099691del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {SOX2-OT:MAP3K13}	4100484	60	0	28	10	30
P-0068239-T02-IM7	SOMATIC	ATRX	ATRX	X	X	75662214	76938883	IGR: 14Kb before MAGEE1(+)	Exon 9 of ATRX(-)	GRCh37	INVERSION	ATRX (NM_000489) rearrangement: c.1865:ATRX_chrX:g.75662214inv	PRECISE		MANUAL_OK	3to3	-	1276669	60	0	220	10	218
P-0068400-T02-IM7	SOMATIC	MEN1	MEN1	11	11	64574831	65904212	Intron of MEN1(-):140bp before exon 5	Intron of PACS1(+):57Kb before exon 2	GRCh37	DELETION	MEN1 (NM_000244) rearrangement: c.799-140:MEN1_chr11:g.65904212del	PRECISE		MANUAL_OK	3to5	-	1329381	60	0	43	10	44
P-0068670-T01-IM7	SOMATIC	LZTR1	LZTR1	22	22	21139860	21336950	Intron of PI4KA(-):8Kb after exon 19	Intron of LZTR1(+):90bp after exon 1	GRCh37	INVERSION	LZTR1 (NM_006767): g.21139860_c.200+90inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {LZTR1:PI4KA}	197090	60	0	16	10	16
P-0068683-T01-IM7	SOMATIC	EXOSC10	MTOR	1	1	11158566	11168235	Intron of EXOSC10(-):353bp before exon 2	Intron of MTOR(-):2bp after exon 57	GRCh37	DUPLICATION	EXOSC10 (NM_001001998) - MTOR (NM_004958) rearrangement: c.112-353:EXOSC10_c.7634+3:MTORdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {EXOSC10:MTOR}	9669	60	0	8	10	8
P-0068715-T01-IM7	SOMATIC	SETD2	SETD2	3	3	47085620	47088031	Intron of SETD2(-):1Kb before exon 17	Exon 16 of SETD2(-)	GRCh37	DELETION	SETD2 (NM_014159) rearrangement: c.7044_c.7099-1430del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	2411	60	0	6	0	6
P-0068718-T01-IM7	SOMATIC	STK40	CSF3R	1	1	36812974	36938081	Intron of STK40(-):1Kb after exon 8	Intron of CSF3R(-):36bp after exon 7	GRCh37	DUPLICATION	STK40 (NM_032017) - CSF3R (NM_000760) rearrangement: c.739+1327:STK40_c.843+37:CSF3Rdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {STK40:CSF3R}	125107	60	0	7	9	7
P-0068718-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12031518	12040899	Intron of ETV6(+):6Kb before exon 6	Intron of ETV6(+):2Kb after exon 7	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.1010-5861_c.1253+1939dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	9381	60	0	40	10	44
P-0068718-T01-IM7	SOMATIC	BRD4	BRD4	19	11	15376318	68250011	Exon 5 of BRD4(-)	5-UTR of PPP6R3(+):55Kb before coding start	GRCh37	TRANSLOCATION	BRD4 (NM_058243) rearrangement: t(11;19)(q13.2;p13.12)(chr11:g.68250011::chr19:g.15376318)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {PPP6R3:BRD4}	0	60	0	15	0	15
P-0068749-T01-IM7	SOMATIC	TP53	TP53	17	17	7573914	7575618	Intron of TP53(-):12bp after exon 10	Intron of TP53(-):1Kb after exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.993+1235_c.1100+13del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1704	55	0	5	10	8
P-0068771-T01-IM7	SOMATIC	DNMT1	DNMT1	19	3	10252734	73747117	Exon 29 of DNMT1(-)	IGR: 74Kb before PDZRN3-AS1(+)	GRCh37	TRANSLOCATION	DNMT1 (NM_001379) rearrangement: t(3;19)(p13;p13.2)(chr3:g.73747117::chr19:g.10252734)	PRECISE		MANUAL_OK	3to5	-	0	60	0	43	10	46
P-0068778-T01-IM7	SOMATIC	SMARCA2	SMARCA2	22	9	29065939	2101655	Intron of TTC28(-):10Kb after exon 1	Intron of SMARCA2(+):39bp after exon 22	GRCh37	TRANSLOCATION	SMARCA2 (NM_003070) rearrangement: t(9;22)(p24.2;q12.1)(chr9:g.2101655::chr22:g.29065939)	PRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {SMARCA2:TTC28}	0	60	0	15	10	15
P-0068778-T01-IM7	SOMATIC	RAF1	TSEN2	3	3	12556110	12645517	Intron of TSEN2(+):2Kb before exon 7	Intron of RAF1(-):117bp after exon 7	GRCh37	INVERSION	RAF1 (NM_002880) - TSEN2 (NM_001145392) rearrangement: c.834+118:RAF1_c.910-2000:TSEN2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {RAF1:TSEN2}	89407	60	0	17	10	17
P-0068783-T01-IM7	SOMATIC	BCL2L11	BCL2L11	3	2	46598789	111884295	5-UTR of LRRC2(-):38Kb before coding start	Intron of BCL2L11(+):3Kb after exon 2	GRCh37	TRANSLOCATION	BCL2L11 (NM_138621) rearrangement: t(2;3)(q13;p21.31)(chr2:g.111884295::chr3:g.46598789)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	32	0	25	10	30
P-0068783-T01-IM7	SOMATIC	PIK3CA	PIK3CA	3	3	178921436	178939912	Exon 5 of PIK3CA(+)	Intron of PIK3CA(+):967bp after exon 14	GRCh37	DELETION	PIK3CA (NM_006218) rearrangement: c.918_c.2187+967del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	18476	60	0	24	10	24
P-0068784-T01-IM7	SOMATIC	KDM5A	KDM5A	12	3	432459	123590973	Intron of KDM5A(-):87bp before exon 16	5-UTR of MYLK(-):258Kb before coding start	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(3;12)(q21.1;p13.33)(chr3:g.123590973::chr12:g.432459)	IMPPRECISE		MANUAL_OK	3to5	Transcript Fusion {MYLK:KDM5A}	0	60	0	10	0	10
P-0068784-T01-IM7	SOMATIC	DNMT3A	DNMT3A	2	2	25505340	28103269	Exon 4 of DNMT3A(-)	Intron of RBKS(-):10Kb after exon 1	GRCh37	INVERSION	DNMT3A (NM_022552) rearrangement: c.418:DNMT3A_chr2:g.28103269inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2597929	56	0	15	10	15
P-0068981-T01-IM7	SOMATIC	NF1	NF1	17	17	29469959	29487414	Intron of NF1(+):13Kb before exon 2	Intron of NF1(+):1Kb after exon 3	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.61-13042_c.288+1303del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	17455	57	0	63	10	71
P-0069035-T01-IM7	SOMATIC	POLR2B	ARID2	12	4	46245093	57869187	Exon 15 of ARID2(+)	Intron of POLR2B(+):2Kb before exon 8	GRCh37	TRANSLOCATION	POLR2B (NM_000938) - ARID2 (NM_152641) rearrangement: t(4;12)(q12;q12)(chr4:g.57869187::chr12:g.46245093)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {POLR2B:ARID2}	0	60	0	26	10	25
P-0001876-T06-IM7	SOMATIC	TMPRSS2	ERG	21	21	39810725	42870614	Intron of ERG(-):7Kb after exon 2	Intron of TMPRSS2(-):498bp before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-498:TMPRSS2_c.236+6602:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3059889	60	0	4	4	4
P-0007565-T06-IM7	SOMATIC	BAD	RPS6KA4	11	11	64038183	64128886	Intron of BAD(-):374bp before exon 3	Intron of RPS6KA4(+):54bp before exon 6	GRCh37	INVERSION	BAD (NM_032989) - RPS6KA4 (NM_003942) rearrangement: c.379-374:BAD_c.571-55:RPS6KA4inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {BAD:RPS6KA4}	90703	60	0	4	10	4
P-0007705-T03-IM7	SOMATIC	EML4	ALK	2	2	29447417	42528485	Intron of ALK(-):909bp after exon 19	Exon 13 of EML4(+)	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1594:EML4_c.3172+910:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {EML4:ALK}	13081068	60	0	23	10	23
P-0007705-T03-IM7	SOMATIC	RTEL1	RTEL1	20	20	50105214	62322055	Intron of NFATC2(-):13Kb before exon 4	Intron of RTEL1(+):102bp before exon 27	GRCh37	DELETION	RTEL1 (NM_032957) rearrangement: c.2486-103:RTEL1_chr20:g.50105214del	IMPPRECISE		MANUAL_OK	3to5	-	12216841	60	0	5	0	5
P-0007816-T03-IM7	SOMATIC	FANCA	FANCA	16	16	89805039	89819921	Exon 43 of FANCA(-)	Intron of FANCA(-):1Kb before exon 31	GRCh37	DUPLICATION	FANCA (NM_000135) rearrangement: c.2982-1291_c.4338dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	14882	60	0	4	10	4
P-0008422-T04-IM7	SOMATIC	FGFR2	FGFR2	10	10	123322417	123323871	Intron of FGFR2(-):2Kb after exon 4	Intron of FGFR2(-):144bp after exon 4	GRCh37	INVERSION	FGFR2 (NM_000141) rearrangement: c.454+145_c.454+1599inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	1454	60	0	12	10	12
P-0008422-T04-IM7	SOMATIC	NFE2L2	NFE2L2	2	2	178098724	178123641	Intron of NFE2L2(-):8bp after exon 2	Intron of NFE2L2(-):6Kb after exon 1	GRCh37	DELETION	NFE2L2 (NM_006164) rearrangement: c.45+5619_c.312+9del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	24917	60	0	54	10	55
P-0008422-T04-IM7	SOMATIC	MACROD2	RB1	20	13	15077129	48881570	Intron of MACROD2(+):133Kb before exon 6	Intron of RB1(+):28bp after exon 2	GRCh37	TRANSLOCATION	MACROD2 (NM_080676) - RB1 (NM_000321) rearrangement: t(13;20)(q14.2;p12.1)(chr13:g.48881570::chr20:g.15077129)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MACROD2:RB1}	0	60	0	18	10	19
P-0012836-T04-IM7	SOMATIC	TBX3	TBX3	12	12	115111461	115119062	Intron of TBX3(-):508bp after exon 7	Intron of TBX3(-):111bp before exon 2	GRCh37	INVERSION	TBX3 (NM_016569) rearrangement: c.390-111_c.1770+509inv	PRECISE		MANUAL_OK	3to3	-	7601	60	0	19	10	11
P-0012836-T04-IM7	SOMATIC	SUPT16H	NOTCH2	14	1	21837840	120510712	Intron of SUPT16H(-):68bp after exon 5	Exon 7 of NOTCH2(-)	GRCh37	TRANSLOCATION	SUPT16H (NM_007192) - NOTCH2 (NM_024408) rearrangement: t(1;14)(p12;q11.2)(chr1:g.120510712::chr14:g.21837840)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SUPT16H:NOTCH2}	0	60	0	12	10	10
P-0013121-T05-IM6	SOMATIC	LMNA	NTRK1	1	1	156109782	156845186	3-UTR of LMNA(+):25Kb after coding stop	Intron of NTRK1(+):125bp before exon 12	GRCh37	DELETION	LMNA (NM_170707) - NTRK1 (NM_002529) rearrangement: c.*885:LMNA_c.1355-127:NTRK1del	PRECISE		MANUAL_OK	3to5	-	735404	NA	0	37	10	37
P-0014385-T06-IM7	SOMATIC	EML4	ALK	2	2	29447676	42524546	Intron of ALK(-):650bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1890:EML4_c.3172+651:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13076870	60	0	79	10	79
P-0016869-T02-IM7	SOMATIC	TFE3	SYCP2L	X	6	48896449	10946274	Intron of TFE3(-):182bp after exon 3	Intron of SYCP2L(+):3Kb after exon 23	GRCh37	TRANSLOCATION	TFE3 (NM_006521) - SYCP2L (NM_001040274) rearrangement: t(6;X)(p24.2;p11.23)(chr6:g.10946274::chrX:g.48896449)	PRECISE		MANUAL_OK	5to5	Protein Fusion: out of frame  {TFE3:SYCP2L}	0	60	0	13	10	13
P-0016869-T02-IM7	SOMATIC	TFE3	TFE3	X	X	47437503	48896354	Intron of SYN1(-):603bp before exon 6	Intron of TFE3(-):277bp after exon 3	GRCh37	INVERSION	TFE3 (NM_006521) rearrangement: c.534+278:TFE3_chrX:g.47437503inv	PRECISE		MANUAL_OK	3to3	-	1458851	60	0	10	10	10
P-0017978-T06-IM7	SOMATIC	EML4	ALK	2	2	29446609	42499177	Intron of ALK(-):215bp before exon 20	Intron of EML4(+):7Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+7306:EML4_c.3173-215:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13052568	55	0	7	7	6
P-0018318-T01-IM6	SOMATIC	SMARCA4	SMARCA4	19	17	11107013	29404325	Exon 10 of SMARCA4(+)	IGR: 17Kb before MIR4733(-)	GRCh37	TRANSLOCATION	SMARCA4 (NM_003072) rearrangement: t(17;19)(q11.2;p13.2)(chr17:g.29404325::chr19:g.11107013)	PRECISE		MANUAL_OK	3to5	-	0	NA	0	22	10	22
P-0022509-T03-IM7	SOMATIC	RAD52	RAD52	12	12	1036447	1048185	Intron of RAD52(-):18bp before exon 6	5-UTR of RAD52(-):26Kb before coding start	GRCh37	DELETION	RAD52 (NM_134424) rearrangement: c.349-18:RAD52_chr12:g.1048185del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	11738	58	0	128	10	161
P-0022509-T03-IM7	SOMATIC	ALK	ALK	2	2	29446658	153686528	Intron of ALK(-):264bp before exon 20	IGR: 112Kb before ARL6IP6(+)	GRCh37	DELETION	ALK (NM_004304) rearrangement: c.3173-264:ALK_chr2:g.153686528del	PRECISE		MANUAL_OK	3to5	-	124239870	60	0	140	10	335
P-0024726-T02-IM7	SOMATIC	ARID5B	ARID5B	10	10	63816917	63819078	Exon 6 of ARID5B(+)	Intron of ARID5B(+):24bp after exon 7	GRCh37	INVERSION	ARID5B (NM_032199) rearrangement: c.888_c.1101+24inv	PRECISE		MANUAL_OK	5to5	-	2161	60	0	9	8	9
P-0025097-T04-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39874654	42875596	Intron of ERG(-):57Kb before exon 4	Intron of TMPRSS2(-):4Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+4281:TMPRSS2_chr21:g.39874654del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3000942	60	0	29	10	31
P-0028912-T01-IM6	SOMATIC	XPO1	XPO1	2	2	57754879	61721139	IGR: 380Kb before VRK2(+)	Exon 12 of XPO1(-)	GRCh37	INVERSION	XPO1 (NM_003400) rearrangement: c.1135:XPO1_chr2:g.57754879inv	PRECISE		MANUAL_OK	5to5	-	3966260	NA	0	15	10	20
P-0028912-T01-IM6	SOMATIC	PTPRT	PTPRT	20	10	40733369	3968862	Intron of PTPRT(-):11bp before exon 26	IGR: 64Kb before MIR6078(+)	GRCh37	TRANSLOCATION	PTPRT (NM_133170) rearrangement: t(10;20)(p15.1;q12)(chr10:g.3968862::chr20:g.40733369)	PRECISE		MANUAL_OK	3to3	-	0	NA	0	41	10	41
P-0030430-T03-IM7	SOMATIC	KDM5A	NINJ2	12	12	432137	695939	Intron of KDM5A(-):110bp after exon 16	Intron of NINJ2(-):21Kb before exon 2	GRCh37	DUPLICATION	KDM5A (NM_001042603) - NINJ2 (NM_016533) rearrangement: c.2275+111:KDM5A_c.172-20595:NINJ2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {KDM5A:NINJ2}	263802	60	0	6	7	6
P-0030729-T03-IM7	SOMATIC	NADK	NADK	1	1	1689984	37606164	Intron of NADK(-):555bp after exon 5	IGR: 21Kb before MIR4255(+)	GRCh37	DELETION	NADK(NM_001198994) rearrangement :c.575+556:NADK_chr1:g.37606164del	PRECISE		MANUAL_OK	3to5	-	35916180	60	0	18	10	18
P-0030948-T03-IM7	SOMATIC	DCUN1D1	DCUN1D1	3	3	182631123	182683304	Intron of ATP11B(+):525bp before exon 29	Intron of DCUN1D1(-):20bp after exon 2	GRCh37	DELETION	DCUN1D1 (NM_020640) rearrangement: c.220+21:DCUN1D1_chr3:g.182631123del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	52181	56	0	9	10	10
P-0030948-T03-IM7	SOMATIC	TERT	TERT	5	5	1295388	6376020	Promoter of TERT(-):42Kb from tx start	Intron of MED10(-):1Kb after exon 2	GRCh37	DELETION	TERT (NM_198253) rearrangement: c.-284:TERT_chr5:g.6376020del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {MED10:TERT}	5080632	60	0	28	10	29
P-0032070-T02-IM7	SOMATIC	PIK3C3	PIK3C3	18	18	20818211	39644650	Intron of CABLES1(+):1Kb after exon 7	Intron of PIK3C3(+):53bp before exon 23	GRCh37	INVERSION	PIK3C3 (NM_002647) rearrangement: c.2433-54:PIK3C3_chr18:g.20818211inv	PRECISE		MANUAL_OK	5to5	-	18826439	60	0	5	4	5
P-0033453-T04-IM7	SOMATIC	PAX3	FOXO1	13	2	41135135	223080435	Intron of FOXO1(-):138bp before exon 2	Intron of PAX3(-):4Kb after exon 7	GRCh37	TRANSLOCATION	PAX3 (NM_181459) - FOXO1 (NM_002015) rearrangement: t(2;13)(q36.1;q14.11)(chr2:g.223080435::chr13:g.41135135)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {PAX3:FOXO1}	0	60	0	23	10	23
P-0033453-T04-IM7	SOMATIC	MET	MET	7	7	116417620	116423544	Intron of MET(+):97bp after exon 16	Intron of MET(+):21bp after exon 19	GRCh37	DELETION	MET (NM_000245) rearrangement: c.3340+97_c.3798+21del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : out of frame	5924	60	0	27	10	28
P-0033884-T04-IM7	SOMATIC	STK11	STK11	19	19	1220496	1222339	Exon 4 of STK11(+)	Intron of STK11(+):334bp after exon 7	GRCh37	DELETION	STK11 (NM_000455) rearrangement: c.589_c.920+334del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1843	60	0	72	10	73
P-0033922-T03-IM7	SOMATIC	EWSR1	WT1	22	11	29684081	32414578	Intron of EWSR1(+):513bp before exon 9	Intron of WT1(-):277bp before exon 8	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32414578::chr22:g.29684081)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	12	10	12
P-0034194-T02-IM7	SOMATIC	KMT2B	HAUS5	19	19	36108827	36215851	Intron of HAUS5(+):13bp after exon 9	Intron of KMT2B(+):38bp before exon 10	GRCh37	DUPLICATION	KMT2B (NM_014727) - HAUS5 (NM_015302) rearrangement: c.3430-39:KMT2B_c.696+13:HAUS5dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {KMT2B:HAUS5}	107024	60	0	3	10	3
P-0034268-T02-IM7	SOMATIC	CBL	CBL	11	11	104728227	119103375	IGR: 28Kb before CASP12(-)	Exon 2 of CBL(+)	GRCh37	DELETION	CBL (NM_005188) rearrangement: c.413:CBL_chr11:g.104728227del	PRECISE		MANUAL_OK	3to5	-	14375148	60	0	16	10	16
P-0034268-T02-IM7	SOMATIC	SEC16A	NOTCH1	9	9	139347276	139403372	Intron of SEC16A(-):603bp after exon 22	Exon 19 of NOTCH1(-)	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.6159+604:SEC16A_c.3121:NOTCH1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {SEC16A:NOTCH1}	56096	25	0	5	10	9
P-0034913-T01-IM7	SOMATIC	BLM	BLM	15	15	91312215	91315735	Intron of BLM(+):147bp before exon 11	Intron of BLM(+):3Kb after exon 12	GRCh37	DUPLICATION	BLM (NM_000057) rearrangement: c.2308-148_c.2555+2919dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	3520	60	0	10	10	11
P-0039940-T04-IM7	SOMATIC	RB1	RB1	16	13	80085839	49030320	IGR: 104Kb before LOC102724084(-)	Intron of RB1(+):19bp before exon 19	GRCh37	TRANSLOCATION	RB1 (NM_000321) rearrangement: t(13;16)(q14.2;q23.2)(chr13:g.49030320::chr16:g.80085839)	PRECISE		MANUAL_OK	5to5	-	0	60	0	71	10	80
P-0043051-T05-IM7	SOMATIC	MSH2	CTNNA2	2	2	47693780	80326605	Intron of MSH2(+):16bp before exon 10	Intron of CTNNA2(+):190Kb after exon 7	GRCh37	DELETION	MSH2 (NM_000251) - CTNNA2 (NM_004389) rearrangement: c.1511-17:MSH2_c.1056+189682:CTNNA2del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MSH2:CTNNA2}	32632825	60	0	12	10	13
P-0043184-T03-IM7	SOMATIC	SEC16A	NOTCH1	9	9	139362223	139397404	Intron of SEC16A(-):643bp after exon 5	Intron of NOTCH1(-):229bp after exon 27	GRCh37	DUPLICATION	SEC16A (NM_014866) - NOTCH1 (NM_017617) rearrangement: c.3802+644:SEC16A_c.5167+230:NOTCH1dup	IMPPRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SEC16A:NOTCH1}	35181	60	0	56	0	60
P-0043778-T02-IM7	SOMATIC	GRIN2A	GRIN2A	19	16	31930302	9928000	IGR: 149Kb before THEG5(+)	Exon 8 of GRIN2A(-)	GRCh37	TRANSLOCATION	GRIN2A (NM_001134407) rearrangement: t(16;19)(p13.2;q12)(chr16:g.9928000::chr19:g.31930302)	PRECISE		MANUAL_OK	5to5	-	0	60	0	9	10	13
P-0043778-T02-IM7	SOMATIC	NOTCH3	NOTCH3	19	3	15272556	165170768	Intron of NOTCH3(-):31bp before exon 33	5-UTR of LINC01322(+):61Kb before coding start	GRCh37	TRANSLOCATION	NOTCH3 (NM_000435) rearrangement: t(3;19)(q26.1;p13.12)(chr3:g.165170768::chr19:g.15272556)	PRECISE		MANUAL_OK	3to5	-	0	60	0	6	10	7
P-0044796-T02-IM7	SOMATIC	TCF7L2	TCF7L2	10	10	114897547	123238970	Intron of TCF7L2(+):3Kb before exon 6	3-UTR of FGFR2(-):400bp after coding stop	GRCh37	INVERSION	TCF7L2 (NM_001146274) rearrangement: c.553-3396:TCF7L2_chr10:g.123238970inv	IMPPRECISE		MANUAL_OK	5to5	-	8341423	60	0	69	0	71
P-0044796-T02-IM7	SOMATIC	FGFR2	FGFR2	10	10	123326016	123357905	Intron of FGFR2(-):798bp before exon 3	5-UTR of FGFR2(-):119Kb before coding start	GRCh37	DELETION	FGFR2 (NM_000141) rearrangement: c.110-798:FGFR2_chr10:g.123357905del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	31889	60	0	52	10	52
P-0045507-T04-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11132446	11134198	Exon 19 of SMARCA4(+)	Exon 20 of SMARCA4(+)	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.2662_c.2864del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1752	60	0	4	10	4
P-0045507-T04-IM7	SOMATIC	FGFR3	TACC3	4	4	1741016	1808733	Intron of TACC3(+):412bp before exon 11	Intron of FGFR3(+):72bp after exon 17	GRCh37	DUPLICATION	FGFR3 (NM_000142) - TACC3 (NM_006342) fusion: c.2274+72:FGFR3_c.1942-413:TACC3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {FGFR3:TACC3}	67717	60	0	21	10	22
P-0046836-T03-IM7	SOMATIC	SMAD4	SMAD4	18	18	48487162	48604660	IGR: 7Kb before ELAC1(+)	Exon 12 of SMAD4(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.1482:SMAD4_chr18:g.48487162inv	PRECISE		MANUAL_OK	5to5	-	117498	60	0	4	8	4
P-0048231-T06-IM7	SOMATIC	CXorf30	TFE3	X	X	36355124	48896636	Intron of CXorf30(+):11Kb before exon 13	Exon 3 of TFE3(-)	GRCh37	INVERSION	CXorf30 (NM_001098843) - TFE3 (NM_006521) rearrangement: c.782-11120:CXorf30_c.530:TFE3inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CXorf30:TFE3}	12541512	60	0	81	10	80
P-0049188-T02-IM7	SOMATIC	TP53	TP53	17	17	7573962	8205033	Exon 10 of TP53(-)	IGR: 9Kb before ARHGEF15(+)	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.1065:TP53_chr17:g.8205033del	PRECISE		MANUAL_OK	3to5	-	631071	60	0	21	10	30
P-0049188-T02-IM7	SOMATIC	MAD1L1	TMPRSS2	21	7	42874884	2217379	Intron of TMPRSS2(-):5Kb before exon 2	Intron of MAD1L1(-):29Kb before exon 11	GRCh37	TRANSLOCATION	MAD1L1 (NM_001013837) - TMPRSS2 (NM_001135099) rearrangement: t(7;21)(p22.3;q22.3)(chr7:g.2217379::chr21:g.42874884)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {MAD1L1:TMPRSS2}	0	60	0	50	10	53
P-0049188-T02-IM7	SOMATIC	KDM6A	KDM6A	X	X	44911320	45168628	Intron of KDM6A(+):273bp after exon 9	IGR: 147Kb before CXorf36(-)	GRCh37	INVERSION	KDM6A (NM_021140) rearrangement: c.748+273:KDM6A_chrX:g.45168628inv	IMPPRECISE		MANUAL_OK	3to3	-	257308	60	0	15	0	15
P-0054325-T03-IM7	SOMATIC	ETV6	ETV6	12	12	12020037	12092716	Intron of ETV6(+):2Kb before exon 5	IGR: 131Kb before BCL2L14(+)	GRCh37	DELETION	ETV6 (NM_001987) rearrangement: c.464-2321:ETV6_chr12:g.12092716del	PRECISE		MANUAL_OK	3to5	-	72679	60	0	73	10	76
P-0055799-T03-IM7	SOMATIC	ZFHX3	ZFHX3	19	16	3034795	72821251	Intron of TLE2(-):6Kb before exon 3	Exon 10 of ZFHX3(-)	GRCh37	TRANSLOCATION	ZFHX3 (NM_006885) rearrangement: t(16;19)(q22.2;p13.3)(chr16:g.72821251::chr19:g.3034795)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ZFHX3:TLE2}	0	57	0	5	0	5
P-0055799-T03-IM7	SOMATIC	NETO1	ERG	21	18	39775482	70470364	Exon 4 of ERG(-)	Intron of NETO1(-):9Kb before exon 5	GRCh37	TRANSLOCATION	NETO1 (NM_001201465) - ERG (NM_182918) rearrangement: t(18;21)(q22.3;q22.2)(chr18:g.70470364::chr21:g.39775482)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NETO1:ERG}	0	60	0	48	10	48
P-0057512-T02-IM7	SOMATIC	NCOR1	NCOR1	17	17	12385137	15942664	IGR: 68Kb before LINC00670(+)	Intron of NCOR1(-):82bp after exon 44	GRCh37	DELETION	NCOR1 (NM_006311) rearrangement: c.6955+83:NCOR1_chr17:g.12385137del	PRECISE		MANUAL_OK	3to5	-	3557527	60	0	2	3	2
P-0058109-T04-IM7	SOMATIC	MEF2B	MEF2B	19	10	19259935	119324985	Intron of MEF2B(-):99bp after exon 3	IGR: 23Kb before EMX2(+)	GRCh37	TRANSLOCATION	MEF2B (NM_001145785) rearrangement: t(10;19)(q26.11;p13.11)(chr10:g.119324985::chr19:g.19259935)	PRECISE		MANUAL_OK	5to3	-	0	60	0	14	10	14
P-0058899-T02-IM7	SOMATIC	FGFR1	TAF4	20	8	60602889	38287091	Intron of TAF4(-):13Kb before exon 2	Intron of FGFR1(-):108bp after exon 4	GRCh37	TRANSLOCATION	FGFR1 (NM_001174067) - TAF4 (NM_003185) rearrangement: t(8;20)(p11.23;q13.33)(chr8:g.38287091::chr20:g.60602889)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {FGFR1:TAF4}	0	60	0	15	0	15
P-0059222-T03-IM7	SOMATIC	EGFR	LANCL2	7	7	55259704	55483594	Intron of EGFR(+):137bp after exon 21	Intron of LANCL2(+):4Kb after exon 6	GRCh37	DELETION	EGFR (NM_005228) - LANCL2 (NM_018697) rearrangement: c.2625+137:EGFR_c.1008+3812:LANCL2del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EGFR:LANCL2}	223890	60	0	3	0	4
P-0061562-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	39872497	42867077	Promoter of ERG(-):121Kb from tx start	Intron of TMPRSS2(-):572bp before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.127-572:TMPRSS2_chr21:g.39872497del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	2994580	60	0	37	10	36
P-0061562-T02-IM7	SOMATIC	FOXP1	FOXP1	3	3	71008361	71023840	3-UTR of FOXP1(-):36bp after coding stop	Intron of FOXP1(-):2Kb before exon 14	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.1531-2013:FOXP1_chr3:g.71008361del	PRECISE		MANUAL_OK	3to5	-	15479	60	0	10	10	10
P-0062493-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39935362	42867594	Intron of ERG(-):12Kb after exon 3	Intron of TMPRSS2(-):1Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.127-1089:TMPRSS2_c.39+12224:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	2932232	60	0	31	10	31
P-0062518-T02-IM7	SOMATIC	TMPRSS2	ERG	21	21	39870672	42872973	Promoter of ERG(-):119Kb from tx start	Intron of TMPRSS2(-):3Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.56-2857:TMPRSS2_c.40-53128:ERGdel	PRECISE		MANUAL_OK	3to5	Transcript Fusion {TMPRSS2:ERG}	3002301	60	0	18	10	18
P-0062994-T02-IM7	SOMATIC	CLTC	ALK	17	2	57768350	29449624	Intron of CLTC(+):278bp after exon 31	Intron of ALK(-):163bp after exon 18	GRCh37	TRANSLOCATION	CLTC (NM_004859) - ALK (NM_004304) fusion: t(2;17)(p23.2;q23.1)(chr2:g.29449624::chr17:g.57768350)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {CLTC:ALK}	0	60	0	54	10	54
P-0064600-T03-IM7	SOMATIC	GNA12	CARD11	7	7	2859083	2949696	Intron of GNA12(-):24Kb before exon 2	Exon 24 of CARD11(-)	GRCh37	DUPLICATION	GNA12 (NM_007353) - CARD11 (NM_032415) rearrangement: c.310-24306:GNA12_c.3248:CARD11dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {GNA12:CARD11}	90613	60	0	6	4	6
P-0064600-T03-IM7	SOMATIC	RBM10	RBM10	X	8	47041194	53223861	Exon 15 of RBM10(+)	5-UTR of ST18(-):198Kb before coding start	GRCh37	TRANSLOCATION	RBM10 (NM_001204468) rearrangement: t(8;X)(q11.23;p11.23)(chr8:g.53223861::chrX:g.47041194)	PRECISE		MANUAL_OK	3to5	Antisense Fusion	0	60	0	20	10	20
P-0064841-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	16	42872781	55819291	Intron of TMPRSS2(-):3Kb before exon 2	IGR: 17Kb before CES1(-)	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(16;21)(q12.2;q22.3)(chr16:g.55819291::chr21:g.42872781)	PRECISE		MANUAL_OK	5to3	-	0	60	0	22	10	22
P-0065014-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29684574	128666909	Intron of EWSR1(+):20bp before exon 9	Intron of FLI1(+):8Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128666909::chr22:g.29684574)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	60	0	83	10	85
P-0066922-T02-IM7	SOMATIC	FMN2	FH	1	1	240469632	241667416	Intron of FMN2(+):11Kb after exon 8	Exon 7 of FH(-)	GRCh37	DELETION	FH (NM_000143) rearrangement: c.1034:FH_chr1:g.240469632del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	1197784	36	0	41	10	52
P-0066922-T02-IM7	SOMATIC	PBRM1	PBRM1	3	3	52430522	52713606	Exon 71 of DNAH1(+)	Exon 2 of PBRM1(-)	GRCh37	DELETION	PBRM1 (NM_018313) rearrangement: c.122:PBRM1_chr3:g.52430522del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	283084	60	0	53	10	56
P-0067075-T01-IM7	SOMATIC	RAB35	RAB35	12	1	120536971	210551324	Intron of RAB35(-):13bp before exon 4	Intron of HHAT(+):9Kb before exon 3	GRCh37	TRANSLOCATION	RAB35 (NM_006861) rearrangement: t(1;12)(q32.2;q24.23)(chr1:g.210551324::chr12:g.120536971)	PRECISE		MANUAL_OK	5to3	Antisense Fusion	0	60	0	7	10	8
P-0067331-T02-IM7	SOMATIC	MGA	MGA	15	15	42003361	42017492	Exon 8 of MGA(+)	Intron of MGA(+):2Kb before exon 10	GRCh37	INVERSION	MGA (NM_001164273) rearrangement: c.2898_c.3431-1886inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	14131	60	0	7	10	7
P-0067493-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29684305	32417552	Intron of EWSR1(+):289bp before exon 9	Intron of WT1(-):250bp after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32417552::chr22:g.29684305)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	10	10	10
P-0067776-T03-IM7	SOMATIC	IGF1R	IGF1R	15	3	99472686	88277402	Intron of IGF1R(+):100bp before exon 14	IGR: 79Kb before C3orf38(+)	GRCh37	TRANSLOCATION	IGF1R (NM_000875) rearrangement: t(3;15)(p11.1;q26.3)(chr3:g.88277402::chr15:g.99472686)	IMPPRECISE		MANUAL_OK	5to5	-	0	60	0	8	0	8
P-0067932-T02-IM7	SOMATIC	KDM5A	KDM5A	21	12	33133507	404870	IGR: 90Kb before SCAF4(-)	Exon 26 of KDM5A(-)	GRCh37	TRANSLOCATION	KDM5A (NM_001042603) rearrangement: t(12;21)(p13.33;q22.11)(chr12:g.404870::chr21:g.33133507)	PRECISE		MANUAL_OK	3to5	-	0	52	0	5	9	5
P-0067969-T03-IM7	SOMATIC	ETV6	ETV6	19	12	54887603	12014462	IGR: 22Kb before LAIR1(-)	Intron of ETV6(+):8Kb before exon 5	GRCh37	TRANSLOCATION	ETV6 (NM_001987) rearrangement: t(12;19)(p13.2;q13.42)(chr12:g.12014462::chr19:g.54887603)	PRECISE		MANUAL_OK	5to5	-	0	60	0	29	10	38
P-0068134-T02-IM7	SOMATIC	TP53	TP53	17	17	7575102	7576932	Intron of TP53(-):1Kb before exon 10	Intron of TP53(-):6bp before exon 9	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.920-6_c.994-1069del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1830	60	0	95	10	99
P-0068288-T01-IM7	SOMATIC	NF2	NF2	22	22	29970887	30077304	Intron of NIPSNAP1(-):4Kb before exon 2	Intron of NF2(+):123bp before exon 15	GRCh37	DELETION	NF2 (NM_000268) rearrangement: c.1575-124:NF2_chr22:g.29970887del	PRECISE		MANUAL_OK	3to5	-	106417	60	0	6	6	6
P-0068292-T02-IM7	SOMATIC	MAP2K2	MAP2K2	19	19	4123782	7469108	Exon 1 of MAP2K2(-)	5-UTR of ARHGEF18(+):36Kb before coding start	GRCh37	INVERSION	MAP2K2 (NM_030662) rearrangement: c.91:MAP2K2_chr19:g.7469108inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MAP2K2:ARHGEF18}	3345326	60	0	8	10	9
P-0068353-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18656484	18675622	Intron of PIK3C2G(+):133bp after exon 22	Intron of PIK3C2G(+):15Kb before exon 24	GRCh37	DELETION	PIK3C2G (NM_004570) rearrangement: c.3030+133_c.3201-15468del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	19138	60	0	38	10	39
P-0068416-T02-IM7	SOMATIC	BRD4	BRD4	19	19	15364409	15445332	Intron of BRD4(-):553bp after exon 11	IGR: 19Kb before AKAP8(-)	GRCh37	DELETION	BRD4 (NM_058243) rearrangement: c.2158+554:BRD4_chr19:g.15445332del	IMPPRECISE		MANUAL_OK	3to5	-	80923	60	0	8	0	8
P-0068466-T02-IM7	SOMATIC	TP53	TP53	17	17	7577480	7583371	Intron of TP53(-):18bp after exon 7	5-UTR of TP53(-):10Kb before coding start	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: c.782+19:TP53_chr17:g.7583371inv	PRECISE		MANUAL_OK	3to3	-	5891	60	0	119	10	117
P-0068466-T02-IM7	SOMATIC	BCOR	BCOR	X	X	39931044	40006193	Intron of BCOR(-):101bp before exon 5	5-UTR of BCOR(-):95Kb before coding start	GRCh37	DELETION	BCOR (NM_001123385) rearrangement: c.2998-101:BCOR_chrX:g.40006193del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	75149	60	0	34	10	34
P-0068467-T02-IM7	SOMATIC	EML4	ALK	2	2	29448295	42524222	Intron of ALK(-):31bp after exon 19	Intron of EML4(+):2Kb after exon 12	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.1489+1566:EML4_c.3172+32:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13075927	60	0	131	10	131
P-0068522-T02-IM7	SOMATIC	BAP1	BAP1	3	3	52434393	52437050	Promoter of BAP1(-):626bp from tx start	Intron of BAP1(-):103bp after exon 14	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.1890+104:BAP1_chr3:g.52434393del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	2657	60	0	12	10	12
P-0068585-T02-IM7	SOMATIC	EWSR1	FLI1	22	11	29683515	128672830	Intron of EWSR1(+):392bp after exon 8	Intron of FLI1(+):2Kb before exon 6	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - FLI1 (NM_002017) fusion: t(11;22)(q24.3;q12.2)(chr11:g.128672830::chr22:g.29683515)	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {EWSR1:FLI1}	0	49	0	17	10	17
P-0068624-T02-IM7	SOMATIC	BRCA2	BRCA2	15	13	59322194	32912148	5-UTR of RNF111(+):827bp before coding start	Exon 11 of BRCA2(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(13;15)(q13.1;q22.2)(chr13:g.32912148::chr15:g.59322194)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {BRCA2:RNF111}	0	60	0	112	10	114
P-0068624-T02-IM7	SOMATIC	EWSR1	FEV	22	2	29683223	219852551	Intron of EWSR1(+):100bp after exon 8	Promoter of CRYBA2(-):2Kb from tx start	GRCh37	TRANSLOCATION	EWSR1 (NM_005243)-FEV (NM_017521) fusion: t(2;22)(q35;q12.2) (chr2:g.219852551::chr22:g.29683223).	PRECISE		MANUAL_OK	3to3	Transcript Fusion {EWSR1:CRYBA2}	0	60	0	105	10	114
P-0068629-T01-IM7	SOMATIC	ETV6	ETV6	12	12	12014855	12026382	Intron of ETV6(+):8Kb before exon 5	Intron of ETV6(+):3Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.464-7503_c.1009+3479dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	11527	60	0	51	0	51
P-0068644-T01-IM7	SOMATIC	RICTOR	RICTOR	5	5	1751754	39074468	IGR: 43Kb before MIR4277(-)	Exon 1 of RICTOR(-)	GRCh37	INVERSION	RICTOR (NM_152756) rearrangement: c.12:RICTOR_chr5:g.1751754inv	PRECISE		MANUAL_OK	5to5	-	37322714	60	0	17	10	17
P-0068695-T01-IM7	SOMATIC	IKZF3	CDK12	17	17	37619043	37992024	Exon 1 of CDK12(+)	Intron of IKZF3(-):4Kb before exon 2	GRCh37	INVERSION	IKZF3 (NM_012481) - CDK12 (NM_016507) rearrangement: c.8-3620:IKZF3_c.719:CDK12inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IKZF3:CDK12}	372981	60	0	6	10	10
P-0068696-T01-IM7	SOMATIC	EWSR1	EWSR1	X	22	39027672	29694587	IGR: 137Kb before LINC01281(-)	Intron of EWSR1(+):135bp before exon 15	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) rearrangement: t(22;X)(q12.2;p11.4)(chr22:g.29694587::chrX:g.39027672)	PRECISE		MANUAL_OK	5to5	-	0	60	0	8	10	9
P-0068700-T01-IM7	SOMATIC	ERCC2	ERCC2	19	19	45867780	45868859	Exon 8 of ERCC2(-)	Intron of ERCC2(-):443bp before exon 6	GRCh37	DELETION	ERCC2 (NM_000400) rearrangement: c.361-443_c.620del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1079	53	0	12	0	12
P-0068700-T01-IM7	SOMATIC	CNTLN	ERCC2	19	9	45871972	17432214	Exon 5 of ERCC2(-)	Intron of CNTLN(+):16Kb after exon 18	GRCh37	TRANSLOCATION	CNTLN (NM_017738) - ERCC2 (NM_000400) rearrangement: t(9;19)(p22.2;q13.32)(chr9:g.17432214::chr19:g.45871972)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CNTLN:ERCC2}	0	60	0	39	10	39
P-0068702-T01-IM7	SOMATIC	NOTCH2	NOTCH2	1	1	120459036	120465842	Exon 34 of NOTCH2(-)	Intron of NOTCH2(-):417bp after exon 26	GRCh37	DELETION	NOTCH2 (NM_024408) rearrangement: c.4859+418_c.6309del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6806	60	0	4	9	4
P-0068702-T01-IM7	SOMATIC	FGFR4	NSD1	5	5	176523805	176565924	Intron of FGFR4(+):63bp after exon 16	Intron of NSD1(+):3Kb after exon 2	GRCh37	DELETION	FGFR4 (NM_213647) - NSD1 (NM_022455) rearrangement: c.2153+63:FGFR4_c.927+2893:NSD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {FGFR4:NSD1}	42119	55	0	89	10	94
P-0068713-T01-IM7	SOMATIC	ELF3	ELF3	1	1	201981921	201983674	Intron of ELF3(+):34bp after exon 5	Intron of ELF3(+):522bp after exon 8	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.598+34_c.1001+522inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	1753	39	0	2	5	2
P-0068726-T01-IM7	SOMATIC	RAF1	RAF1	3	3	12626473	12627185	Exon 16 of RAF1(-)	Exon 14 of RAF1(-)	GRCh37	DELETION	RAF1 (NM_002880) rearrangement: c.1531_c.1676del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	712	60	0	2	8	1
P-0068728-T01-IM7	SOMATIC	ZBTB7A	BCOR	X	19	39934454	4052794	Intron of BCOR(-):21bp before exon 4	Intron of ZBTB7A(-):1Kb after exon 2	GRCh37	TRANSLOCATION	ZBTB7A (NM_015898) - BCOR (NM_001123385) rearrangement: t(19;X)(p13.3;p11.4)(chr19:g.4052794::chrX:g.39934454)	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {ZBTB7A:BCOR}	0	60	0	13	10	13
P-0068755-T01-IM7	SOMATIC	B2M	B2M	15	15	44502788	45007776	IGR: 78Kb before CASC4(+)	Exon 2 of B2M(+)	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.223:B2M_chr15:g.44502788del	PRECISE		MANUAL_OK	3to5	-	504988	60	0	14	10	14
P-0068791-T02-IM7	SOMATIC	DGKA	GLI1	12	12	56342725	57857750	Intron of DGKA(+):3Kb before exon 19	Intron of GLI1(+):31bp before exon 3	GRCh37	DELETION	DGKA (NM_201554) - GLI1 (NM_005269) rearrangement: c.1427-2682:DGKA_c.101-32:GLI1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {DGKA:GLI1}	1515025	29	0	49	10	64
P-0068804-T01-IM7	SOMATIC	IRS1	IRS1	2	2	222319414	227660673	Intron of EPHA4(-):852bp after exon 8	Exon 1 of IRS1(-)	GRCh37	INVERSION	IRS1 (NM_005544) rearrangement: c.2782:IRS1_chr2:g.222319414inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	5341259	60	0	18	10	29
P-0068831-T01-IM7	SOMATIC	BAP1	BAP1	3	3	52418793	52436554	Intron of DNAH1(+):8bp before exon 53	Intron of BAP1(-):63bp after exon 16	GRCh37	DELETION	BAP1 (NM_004656) rearrangement: c.2056+64:BAP1_chr3:g.52418793del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	17761	60	0	130	10	133
P-0068834-T03-IM7	SOMATIC	CTCF	CTCF	16	16	62527181	67645565	IGR: 841Kb before CDH8(-)	Intron of CTCF(+):49bp after exon 3	GRCh37	INVERSION	CTCF (NM_006565) rearrangement: c.781+49:CTCF_chr16:g.62527181inv	PRECISE		MANUAL_OK	3to3	-	5118384	60	0	19	10	19
P-0068842-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140423756	140485646	IGR: 10Kb before BRAF(-)	Intron of BRAF(-):2Kb after exon 9	GRCh37	DUPLICATION	BRAF (NM_004333) rearrangement: c.1177+1702:BRAF_chr7:g.140423756dup	PRECISE		MANUAL_OK	5to3	-	61890	60	0	23	10	25
P-0068865-T02-IM7	SOMATIC	ALK	RANBP2	2	2	29447373	109376536	Intron of ALK(-):953bp after exon 19	Intron of RANBP2(+):2Kb after exon 18	GRCh37	INVERSION	ALK (NM_004304) - RANBP2 (NM_006267) rearrangement: c.3172+954:ALK_c.2602+1532:RANBP2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {ALK:RANBP2}	79929163	60	0	3	10	8
P-0068866-T02-IM7	SOMATIC	ARID1A	WDTC1	1	1	27106279	27632057	Exon 20 of ARID1A(+)	Intron of WDTC1(+):373bp after exon 15	GRCh37	DELETION	ARID1A (NM_006015) - WDTC1 (NM_015023) rearrangement: c.5890:ARID1A_c.1833+373:WDTC1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {ARID1A:WDTC1}	525778	60	0	4	9	4
P-0068866-T02-IM7	SOMATIC	EWSR1	WT1	22	11	29688298	32416519	Intron of EWSR1(+):140bp after exon 11	Intron of WT1(-):1Kb after exon 7	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - WT1 (NM_024426) fusion: t(11;22)(p13;q12.2)(chr11:g.32416519::chr22:g.29688298)	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EWSR1:WT1}	0	60	0	90	10	90
P-0068893-T02-IM7	SOMATIC	NF1	NF1	17	17	29542911	29603415	Intron of NF1(+):1Kb after exon 13	Intron of NF1(+):11Kb after exon 35	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.1527+1308_c.4835+11058del	PRECISE		MANUAL_OK	3to5	Deletion of 22 exons : out of frame	60504	60	0	15	10	16
P-0068899-T02-IM7	SOMATIC	GLI1	GLI1	12	12	49378950	57861842	Promoter of WNT1(+):7Kb from tx start	Exon 10 of GLI1(+)	GRCh37	INVERSION	GLI1 (NM_005269) rearrangement: c.1143:GLI1_chr12:g.49378950inv	PRECISE		MANUAL_OK	5to5	-	8482892	60	0	31	10	35
P-0068902-T02-IM7	SOMATIC	MSI2	MSI2	17	1	55693541	194925163	Intron of MSI2(+):96bp after exon 9	IGR: 1Mb before KCNT2(-)	GRCh37	TRANSLOCATION	MSI2 (NM_138962) rearrangement: t(1;17)(q31.3;q22)(chr1:g.194925163::chr17:g.55693541)	PRECISE		MANUAL_OK	3to5	-	0	60	0	26	10	26
P-0068902-T02-IM7	SOMATIC	EZH2	NFASC	7	1	148513757	204945647	Intron of EZH2(-):18bp after exon 12	Intron of NFASC(+):151bp before exon 15	GRCh37	TRANSLOCATION	EZH2 (NM_004456) - NFASC (NM_001005388) rearrangement: t(1;7)(q32.1;q36.1)(chr1:g.204945647::chr7:g.148513757)	PRECISE		MANUAL_OK	5to5	Protein Fusion: in frame  {EZH2:NFASC}	0	60	0	40	10	43
P-0068917-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38275631	38459075	Intron of FGFR1(-):114bp after exon 11	Promoter of RNF5P1(-):1Kb from tx start	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.1523+115:FGFR1_chr8:g.38459075del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {RNF5P1:FGFR1}	183444	60	1	51	10	52
P-0068921-T01-IM7	SOMATIC	NOTCH1	NOTCH1	9	9	139397381	139423724	Intron of NOTCH1(-):252bp after exon 27	Intron of NOTCH1(-):5Kb before exon 3	GRCh37	DELETION	NOTCH1 (NM_017617) rearrangement: c.141-5293_c.5167+253del	PRECISE		MANUAL_OK	3to5	Deletion of 25 exons : out of frame	26343	60	0	75	10	79
P-0068922-T01-IM7	SOMATIC	TERT	TERT	14	5	53256281	1253826	5-UTR of GNPNAT1(-):11Kb before coding start	3-UTR of TERT(-):16bp after coding stop	GRCh37	TRANSLOCATION	TERT (NM_198253) rearrangement: t(5;14)(p15.33;q22.1)(chr5:g.1253826::chr14:g.53256281)	PRECISE		MANUAL_OK	3to5	-	0	60	0	18	10	19
P-0068966-T01-IM7	SOMATIC	ATRX	ATRX	X	X	76846672	76854847	Intron of ATRX(-):1Kb before exon 27	Intron of ATRX(-):32bp after exon 25	GRCh37	DELETION	ATRX (NM_000489) rearrangement: c.5956+33_c.6111-1262del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	8175	60	0	39	10	39
P-0068968-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	8	42876025	71148799	Intron of TMPRSS2(-):4Kb after exon 1	5-UTR of NCOA2(-):123Kb before coding start	GRCh37	TRANSLOCATION	TMPRSS2 (NM_001135099) rearrangement: t(8;21)(q13.3;q22.3)(chr8:g.71148799::chr21:g.42876025)	PRECISE		MANUAL_OK	5to3	Transcript Fusion {TMPRSS2:NCOA2}	0	60	0	82	10	82
P-0068968-T01-IM7	SOMATIC	KIT	KIT	4	4	55602791	55716965	Intron of KIT(+):16bp after exon 18	IGR: 193Kb before KIT(+)	GRCh37	DELETION	KIT (NM_000222) rearrangement: c.2596+16:KIT_chr4:g.55716965del	PRECISE		MANUAL_OK	3to5	-	114174	60	0	56	10	58
P-0068969-T01-IM7	SOMATIC	SRSF2	SRSF2	17	17	74732657	75208325	Intron of SRSF2(-):111bp before exon 2	Intron of SEC14L1(+):42bp after exon 17	GRCh37	DELETION	SRSF2 (NM_003016) rearrangement: c.363-111:SRSF2_chr17:g.75208325del	PRECISE		MANUAL_OK	3to5	-	475668	60	0	5	10	6
P-0068969-T01-IM7	SOMATIC	ITGAV	ERBB4	2	2	187457619	212566965	Intron of ITGAV(+):2Kb after exon 1	Intron of ERBB4(-):74bp before exon 12	GRCh37	INVERSION	ITGAV (NM_002210) - ERBB4 (NM_005235) rearrangement: c.185+2369:ITGAV_c.1290-74:ERBB4inv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {ITGAV:ERBB4}	25109346	60	0	33	10	33
P-0068972-T02-IM7	SOMATIC	ERCC2	OPA3	19	19	45866701	46054445	Intron of ERCC2(-):299bp after exon 11	Intron of OPA3(-):22Kb before exon 2	GRCh37	DUPLICATION	ERCC2 (NM_000400) - OPA3 (NM_001017989) rearrangement: c.1118+300:ERCC2_c.143-21731:OPA3dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {ERCC2:OPA3}	187744	56	0	7	10	7
P-0068982-T01-IM7	SOMATIC	RBM10	RBM10	X	X	47004882	47008352	Exon 1 of RBM10(+)	Intron of RBM10(+):1Kb after exon 2	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.37_c.212+1455del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	3470	60	0	16	10	16
P-0069002-T02-IM7	SOMATIC	RBM10	RBM10	X	X	46931765	47040745	IGR: 6Kb before RGN(+)	Exon 13 of RBM10(+)	GRCh37	DELETION	RBM10 (NM_001204468) rearrangement: c.1575:RBM10_chrX:g.46931765del	PRECISE		MANUAL_OK	3to5	-	108980	60	0	15	10	18
P-0069021-T01-IM7	SOMATIC	BRAF	BRAF	7	7	130709973	140493999	3-UTR of LINC-PINT(-):82Kb after coding stop	Intron of BRAF(-):108bp after exon 8	GRCh37	INVERSION	BRAF (NM_004333) rearrangement: c.1140+109:BRAF_chr7:g.130709973inv	PRECISE		MANUAL_OK	3to3	-	9784026	60	0	7	10	7
P-0069021-T01-IM7	SOMATIC	EIF1AX	EIF1AX	X	X	20151355	20153704	Intron of EIF1AX(-):719bp after exon 4	Intron of EIF1AX(-):151bp after exon 3	GRCh37	DELETION	EIF1AX (NM_001412) rearrangement: c.204+152_c.255+720del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : in frame	2349	60	0	6	7	6
P-0069024-T04-IM7	SOMATIC	KIAA1549	BRAF	7	7	138546073	140492117	Exon 16 of KIAA1549(-)	Intron of BRAF(-):2Kb after exon 8	GRCh37	DUPLICATION	KIAA1549 (NM_001164665) - BRAF (NM_004333) fusion: c.5059:KIAA1549_c.1140+1991:BRAFdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIAA1549:BRAF}	1946044	60	0	50	10	53
P-0069025-T01-IM7	SOMATIC	PREX2	PREX2	18	8	287994	68931800	IGR: 31Kb before COLEC12(-)	Exon 3 of PREX2(+)	GRCh37	TRANSLOCATION	PREX2 (NM_024870) rearrangement: t(8;18)(q13.2;p11.32)(chr8:g.68931800::chr18:g.287994)	PRECISE		MANUAL_OK	5to5	-	0	55	0	11	10	12
P-0069025-T01-IM7	SOMATIC	SFTPB	SFTPB	2	2	85885489	85895120	3-UTR of SFTPB(-):3Kb after coding stop	Intron of SFTPB(-):119bp after exon 2	GRCh37	INVERSION	SFTPB (NM_198843) rearrangement: c.103+120_c.*509del	PRECISE		MANUAL_OK	5to5	-	9631	60	0	9	10	13
P-0069031-T01-IM7	SOMATIC	NTRK2	NTRK2	9	9	87351665	87486933	Intron of NTRK2(+):5Kb before exon 12	Intron of NTRK2(+):5Kb after exon 16	GRCh37	DUPLICATION	NTRK2 (NM_006180) rearrangement: c.1160-5142_c.1633+4587dup	PRECISE		MANUAL_OK	5to3	Duplication of 5 exons : in frame	135268	60	0	22	10	23
P-0069051-T01-IM7	SOMATIC	CDH1	CDH1	16	6	68867348	55038872	Exon 16 of CDH1(+)	Promoter of HCRTR2(+):198bp from tx start	GRCh37	TRANSLOCATION	CDH1 (NM_004360) rearrangement: t(6;16)(p12.1;q22.1)(chr6:g.55038872::chr16:g.68867348)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {CDH1:HCRTR2}	0	60	0	9	10	9
P-0069051-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	40103665	42872430	IGR: 7Kb before LINC00114(-)	Intron of TMPRSS2(-):2Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.56-2314:TMPRSS2_chr21:g.40103665del	PRECISE		MANUAL_OK	3to5	-	2768765	60	0	10	10	12
P-0069054-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39867710	42874700	Intron of ERG(-):3Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4584:TMPRSS2_c.18+2577:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3006990	60	0	12	10	12
P-0069084-T01-IM7	SOMATIC	RPTOR	RPTOR	17	17	35994852	78936280	Intron of DDX52(-):1Kb before exon 3	Exon 32 of RPTOR(+)	GRCh37	DELETION	RPTOR (NM_020761) rearrangement: c.3712:RPTOR_chr17:g.35994852del	PRECISE		MANUAL_OK	3to5	-	42941428	60	0	23	10	24
P-0069156-T02-IM7	SOMATIC	SMAD4	SMAD4	18	18	48584758	48692637	Exon 7 of SMAD4(+)	IGR: 8Kb before MEX3C(-)	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.836:SMAD4_chr18:g.48692637del	PRECISE		MANUAL_OK	3to5	-	107879	55	0	30	10	31
P-0069169-T01-IM7	SOMATIC	ANKRD44	PAX8	2	2	113993268	197868615	Intron of PAX8(-):109bp before exon 9	Intron of ANKRD44(-):2Kb after exon 21	GRCh37	DELETION	ANKRD44 (NM_001195144) - PAX8 (NM_003466) rearrangement: c.2347+1803:ANKRD44_c.899-109:PAX8del	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ANKRD44:PAX8}	83875347	60	0	5	0	5
P-0069173-T01-IM7	SOMATIC	UPF1	UPF1	19	19	18942471	18966150	Promoter of UPF1(+):272bp from tx start	Intron of UPF1(+):99bp after exon 11	GRCh37	DUPLICATION	UPF1 (NM_002911) rearrangement: c.1544+99:UPF1_chr19:g.18942471dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript	23679	60	0	2	7	2
P-0069185-T02-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	28005695	42877943	IGR: 167Kb before CYYR1(-)	Intron of TMPRSS2(-):2Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) rearrangement: c.55+1934:TMPRSS2_chr21:g.28005695del	PRECISE		MANUAL_OK	3to5	-	14872248	60	0	15	10	15
P-0069189-T02-IM7	SOMATIC	CCAR1	TET1	10	10	70404659	70488805	Exon 4 of TET1(+)	Intron of CCAR1(+):6Kb after exon 2	GRCh37	DUPLICATION	CCAR1 (NM_018237) - TET1 (NM_030625) rearrangement: c.73+6471:CCAR1_c.2173:TET1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {CCAR1:TET1}	84146	60	0	47	10	49
P-0069195-T01-IM7	SOMATIC	PBRM1	PBRM1	16	3	22396945	52702585	IGR: 34Kb before RRN3P3(-)	Exon 4 of PBRM1(-)	GRCh37	TRANSLOCATION	PBRM1 (NM_018313) rearrangement: t(3;16)(p21.1;p12.2)(chr3:g.52702585::chr16:g.22396945)	PRECISE		MANUAL_OK	3to3	-	0	60	0	12	10	12
P-0069197-T01-IM7	SOMATIC	PIK3CG	PIK3CG	7	7	106508299	144939197	Exon 2 of PIK3CG(+)	IGR: 790Kb before TPK1(-)	GRCh37	INVERSION	PIK3CG (NM_002649) rearrangement: c.293:PIK3CG_chr7:g.144939197inv	PRECISE		MANUAL_OK	3to3	-	38430898	54	0	23	10	27
P-0069198-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55181840	55222131	Intron of EGFR(+):28Kb before exon 2	Intron of EGFR(+):286bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.89-28139_c.889+286del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	40291	60	0	780	0	2903
P-0069198-T01-IM7	SOMATIC	RAD21	RAD21	8	8	116680529	117864898	5-UTR of TRPS1(-):254Kb before coding start	Exon 10 of RAD21(-)	GRCh37	INVERSION	RAD21 (NM_006265) rearrangement: c.1211:RAD21_chr8:g.116680529inv	PRECISE		MANUAL_OK	3to3	-	1184369	60	0	67	10	67
P-0069200-T01-IM7	SOMATIC	TBX3	TBX3	12	6	115120622	17561879	Exon 1 of TBX3(-)	IGR: 39Kb before FAM8A1(+)	GRCh37	TRANSLOCATION	TBX3 (NM_016569) rearrangement: t(6;12)(p22.3;q24.21)(chr6:g.17561879::chr12:g.115120622)	PRECISE		MANUAL_OK	5to5	-	0	60	0	40	10	47
P-0069200-T01-IM7	SOMATIC	BRCA2	TMPRSS2	21	13	42866350	32945390	Exon 3 of TMPRSS2(-)	Intron of BRCA2(+):153bp after exon 20	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) - TMPRSS2 (NM_001135099) rearrangement: t(13;21)(q13.1;q22.3)(chr13:g.32945390::chr21:g.42866350)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {BRCA2:TMPRSS2}	0	60	0	54	10	53
P-0069200-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39863490	42868105	Intron of ERG(-):7Kb after exon 1	Intron of TMPRSS2(-):2Kb before exon 3	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.127-1600:TMPRSS2_c.18+6797:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {TMPRSS2:ERG}	3004615	60	0	118	10	119
P-0069200-T01-IM7	SOMATIC	FAT1	FAT1	4	4	187527608	187535446	Intron of FAT1(-):241bp before exon 17	Exon 12 of FAT1(-)	GRCh37	DUPLICATION	FAT1 (NM_005245) rearrangement: c.9128_c.10207-241dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	7838	60	0	11	10	11
P-0069201-T01-IM7	SOMATIC	MYO1D	ERBB2	17	17	31091921	37858599	Exon 8 of MYO1D(-)	Intron of ERBB2(+):2Kb after exon 1	GRCh37	INVERSION	MYO1D (NM_015194) - ERBB2 (NM_004448) fusion: c.1010:MYO1D_c.73+2035:ERBB2inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {MYO1D:ERBB2}	6766678	60	0	12	8	12
P-0069202-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	9058526	48604793	IGR: 44Kb before NDUFV2(+)	Exon 12 of SMAD4(+)	GRCh37	INVERSION	SMAD4 (NM_005359) rearrangement: c.1615:SMAD4_chr18:g.9058526inv	PRECISE		MANUAL_OK	3to3	-	39546267	60	0	22	10	22
P-0069258-T01-IM7	SOMATIC	KDM5A	KDM5A	12	12	494967	497323	Intron of KDM5A(-):95bp after exon 2	Intron of KDM5A(-):769bp after exon 1	GRCh37	INVERSION	KDM5A (NM_001042603) rearrangement: c.165+770_c.243+96inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	2356	60	0	106	10	112
P-0069259-T01-IM7	SOMATIC	CREBBP	CREBBP	16	16	3784496	3817676	Intron of CREBBP(-):2Kb after exon 28	Intron of CREBBP(-):44bp after exon 16	GRCh37	INVERSION	CREBBP (NM_004380) rearrangement: c.3250+45_c.4728+1541inv	IMPPRECISE		MANUAL_OK	3to3	-	33180	60	0	6	0	6
P-0069260-T01-IM7	SOMATIC	BRAF	BRAF	7	7	140364259	140453923	IGR: 9Kb before ADCK2(+)	Intron of BRAF(-):63bp after exon 14	GRCh37	DELETION	BRAF (NM_004333) rearrangement: c.1741+64:BRAF_chr7:g.140364259del	IMPPRECISE		MANUAL_OK	3to5	-	89664	30	0	7	0	8
P-0069265-T01-IM7	SOMATIC	MEN1	MEN1	11	11	64572625	68520368	Exon 9 of MEN1(-)	Promoter of CPT1A(-):2Kb from tx start	GRCh37	INVERSION	MEN1 (NM_000244) rearrangement: c.1246:MEN1_chr11:g.68520368inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	3947743	60	0	29	10	38
P-0069266-T01-IM7	SOMATIC	TPM3	NTRK1	1	1	154141499	156843601	Intron of TPM3(-):281bp after exon 9	Exon 8 of NTRK1(+)	GRCh37	INVERSION	TPM3 (NM_152263) - NTRK1 (NM_002529) fusion: c.854+282:TPM3_c.1027:NTRK1inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {TPM3:NTRK1}	2702102	45	0	7	0	7
P-0069271-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39864823	42874617	Intron of ERG(-):5Kb after exon 1	Intron of TMPRSS2(-):5Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-4501:TMPRSS2_c.18+5464:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3009794	60	0	52	10	54
P-0069277-T01-IM7	SOMATIC	MDC1	MDC1	6	6	30671266	30684580	Exon 11 of MDC1(-)	5-UTR of MDC1(-):16Kb before coding start	GRCh37	DELETION	MDC1 (NM_014641) rearrangement: c.5611:MDC1_chr6:g.30684580del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	13314	60	0	23	10	22
P-0069291-T01-IM7	SOMATIC	TP53	TP53	17	17	7585890	7597258	5-UTR of TP53(-):13Kb before coding start	Intron of WRAP53(+):4Kb after exon 4	GRCh37	INVERSION	TP53 (NM_000546) rearrangement: chr17:g.7585890:TP53_chr17:g.7597258inv	PRECISE		MANUAL_OK	5to5	Transcript Fusion {TP53:WRAP53}	11368	60	0	100	10	108
P-0069294-T01-IM7	SOMATIC	TP53	TP53	17	17	7578662	7585398	Intron of TP53(-):108bp before exon 5	5-UTR of TP53(-):12Kb before coding start	GRCh37	DELETION	TP53 (NM_000546) rearrangement: c.376-108:TP53_chr17:g.7585398del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	6736	60	0	62	10	69
P-0069296-T01-IM7	SOMATIC	STAT5B	STAT5B	17	17	40372129	40386021	Intron of STAT5B(-):269bp before exon 6	5-UTR of STAT5B(-):32Kb before coding start	GRCh37	DELETION	STAT5B (NM_012448) rearrangement: c.551-269:STAT5B_chr17:g.40386021del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	13892	60	0	7	10	9
P-0069297-T01-IM7	SOMATIC	C5AR1	POLD1	19	19	47814034	50902161	Intron of C5AR1(+):879bp after exon 1	Exon 2 of POLD1(+)	GRCh37	DELETION	C5AR1 (NM_001736) - POLD1 (NM_002691) rearrangement: c.3+879:C5AR1_c.53:POLD1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {C5AR1:POLD1}	3088127	60	0	61	10	63
P-0069309-T01-IM7	SOMATIC	CHEK2	CHEK2	22	21	29108060	38670170	Intron of CHEK2(-):55bp before exon 6	IGR: 70Kb before DYRK1A(+)	GRCh37	TRANSLOCATION	CHEK2 (NM_007194) rearrangement: t(21;22)(q22.13;q12.1)(chr21:g.38670170::chr22:g.29108060)	PRECISE		MANUAL_OK	3to3	-	0	60	0	17	10	17
P-0069316-T01-IM7	SOMATIC	MITF	MITF	12	3	56950087	69990361	Intron of RBMS2(+):6Kb before exon 2	Intron of MITF(+):25bp before exon 4	GRCh37	TRANSLOCATION	MITF (NM_198159) rearrangement: t(3;12)(p13;q13.3)(chr3:g.69990361::chr12:g.56950087)	PRECISE		MANUAL_OK	3to3	Antisense Fusion	0	60	0	15	10	15
P-0069345-T01-IM7	SOMATIC	REL	REL	2	2	61144274	61149012	Intron of REL(+):122bp after exon 5	Exon 11 of REL(+)	GRCh37	DELETION	REL (NM_002908) rearrangement: c.535+122_c.1202del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	4738	60	1	22	10	21
P-0069345-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	42862244	42866536	Intron of TMPRSS2(-):724bp before exon 4	Intron of TMPRSS2(-):31bp before exon 3	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.127-31_c.350-724inv	IMPPRECISE		MANUAL_OK	5to5	Antisense Fusion	4292	60	0	12	0	13
P-0069346-T01-IM7	SOMATIC	NF1	NF1	X	17	129717479	29549437	IGR: 40Kb before ENOX2(-)	Intron of NF1(+):490bp after exon 15	GRCh37	TRANSLOCATION	NF1 (NM_001042492) rearrangement: t(17;X)(q11.2;q26.1)(chr17:g.29549437::chrX:g.129717479)	PRECISE		MANUAL_OK	5to5	-	0	60	0	20	10	21
P-0069352-T01-IM7	SOMATIC	MAP3K9	DIS3	14	13	71271085	73336368	Intron of MAP3K9(-):3Kb before exon 2	Intron of DIS3(-):93bp before exon 17	GRCh37	TRANSLOCATION	MAP3K9 (NM_033141) - DIS3 (NM_014953) rearrangement: t(13;14)(q22.1;q24.2)(chr13:g.73336368::chr14:g.71271085)	PRECISE		MANUAL_OK	5to3	Protein Fusion: out of frame  {MAP3K9:DIS3}	0	60	0	7	10	6
P-0069368-T01-IM7	SOMATIC	None	None	11	1	28455787	11735702	IGR: 43Kb before MIR8068(-)	Intron of MAD2L2(-):12bp after exon 7	GRCh37	TRANSLOCATION	None	PRECISE		MANUAL_OK	5to3	-	0	55	0	8	7	8
P-0069369-T01-IM7	SOMATIC	B2M	B2M	15	15	45007901	45009803	Intron of B2M(+):2bp after exon 2	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346+2:B2M_chr15:g.45009803del	IMPPRECISE		MANUAL_OK	3to5	-	1902	60	0	5	0	5
P-0069371-T01-IM7	SOMATIC	EED	EED	12	11	69533884	85979385	IGR: 99Kb before CPSF6(+)	Intron of EED(+):112bp before exon 9	GRCh37	TRANSLOCATION	EED (NM_003797) rearrangement: t(11;12)(q14.2;q15)(chr11:g.85979385::chr12:g.69533884)	IMPPRECISE		MANUAL_OK	5to5	-	0	60	0	6	0	6
P-0069371-T01-IM7	SOMATIC	FANCC	FANCC	9	9	86840467	97912010	IGR: 50Kb before SLC28A3(-)	Intron of FANCC(-):194bp after exon 7	GRCh37	INVERSION	FANCC (NM_000136) rearrangement: c.686+195:FANCC_chr9:g.86840467inv	IMPPRECISE		MANUAL_OK	5to5	-	11071543	60	0	5	0	9
P-0069374-T01-IM7	SOMATIC	FLT1	FLT1	13	13	28895572	34072488	Intron of FLT1(-):27bp after exon 23	Intron of STARD13(-):26Kb after exon 4	GRCh37	DELETION	FLT1 (NM_002019) rearrangement: c.3174+28:FLT1_chr13:g.34072488del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {STARD13:FLT1}	5176916	60	0	19	10	19
P-0069374-T01-IM7	SOMATIC	IRS2	IRS2	13	13	110417375	110438766	Intron of IRS2(-):9Kb before exon 2	5-UTR of IRS2(-):30Kb before coding start	GRCh37	DELETION	IRS2 (NM_003749) rearrangement: c.4013-8720:IRS2_chr13:g.110438766del	PRECISE		MANUAL_OK	3to5	Deletion within transcript	21391	60	0	8	10	8
P-0069374-T01-IM7	SOMATIC	NF1	NF1	17	17	29574855	29576053	Intron of NF1(+):1Kb before exon 30	Exon 30 of NF1(+)	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.3975-1147_c.4026del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	1198	60	0	6	10	6
P-0069379-T01-IM7	SOMATIC	SMAD4	SMAD4	18	18	48591584	48604553	Intron of SMAD4(+):208bp before exon 9	Intron of SMAD4(+):72bp before exon 12	GRCh37	DELETION	SMAD4 (NM_005359) rearrangement: c.956-209_c.1448-73del	IMPPRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	12969	60	0	28	0	28
P-0069379-T01-IM7	SOMATIC	BRD4	BRD4	19	19	15383730	48963154	Exon 2 of BRD4(-)	5-UTR of KCNJ14(+):2Kb before coding start	GRCh37	INVERSION	BRD4 (NM_058243) rearrangement: c.181:BRD4_chr19:g.48963154inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {BRD4:KCNJ14}	33579424	60	0	40	10	43
P-0069384-T01-IM7	SOMATIC	ETV6	ETV6	12	12	11870990	12024197	Intron of ETV6(+):34Kb before exon 2	Intron of ETV6(+):1Kb after exon 5	GRCh37	DUPLICATION	ETV6 (NM_001987) rearrangement: c.34-34394_c.1009+1294dup	IMPPRECISE		MANUAL_OK	5to3	Duplication of 4 exons : out of frame	153207	60	0	11	0	11
P-0069385-T01-IM7	SOMATIC	FBXW7	FBXW7	4	4	153167577	153245483	IGR: 75Kb before FBXW7(-)	Exon 11 of FBXW7(-)	GRCh37	DELETION	FBXW7 (NM_033632) rearrangement: c.1708:FBXW7_chr4:g.153167577del	PRECISE		MANUAL_OK	3to5	-	77906	60	0	6	5	6
P-0069386-T01-IM7	SOMATIC	ELF3	ELF3	1	1	201669833	201981790	Intron of NAV1(+):12Kb before exon 2	Exon 5 of ELF3(+)	GRCh37	INVERSION	ELF3 (NM_004433) rearrangement: c.501:ELF3_chr1:g.201669833inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	311957	32	0	11	10	12
P-0069386-T01-IM7	SOMATIC	ZNRF3	KREMEN1	22	22	29442697	29551732	Intron of ZNRF3(+):6bp before exon 6	Intron of KREMEN1(+):11Kb before exon 10	GRCh37	DELETION	ZNRF3 (NM_001206998) - KREMEN1 (NM_032045) rearrangement: c.745-7:ZNRF3_c.1417-11300:KREMEN1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: in frame  {ZNRF3:KREMEN1}	109035	29	0	16	10	21
P-0069386-T01-IM7	SOMATIC	CTNNB1	CTNNB1	3	3	41265559	41277722	Exon 2 of CTNNB1(+)	Intron of CTNNB1(+):117bp before exon 12	GRCh37	DELETION	CTNNB1 (NM_001904) rearrangement: c.1804-118:CTNNB1_chr3:g.41265559del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	12163	60	0	46	10	46
P-0069387-T01-IM7	SOMATIC	IDH2	IDH2	15	15	69145323	90630518	5-UTR of MIR548H4(+):345Kb before coding start	Intron of IDH2(-):23bp before exon 7	GRCh37	INVERSION	IDH2 (NM_002168) rearrangement: c.816-23:IDH2_chr15:g.69145323inv	PRECISE		MANUAL_OK	3to3	Transcript Fusion {MIR548H4:IDH2}	21485195	60	0	53	10	52
P-0069387-T01-IM7	SOMATIC	EWSR1	CREB3L1	22	11	29689401	46332690	Intron of EWSR1(+):806bp after exon 12	Exon 5 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46332690::chr22:g.29689401)	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	60	0	137	10	141
P-0069396-T02-IM7	SOMATIC	EML4	ALK	2	2	29446944	42503682	Intron of ALK(-):550bp before exon 20	Intron of EML4(+):4Kb before exon 6	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.668-4308:EML4_c.3173-550:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13056738	60	0	33	10	32
P-0069400-T01-IM7	SOMATIC	DOT1L	DOT1L	19	5	2206756	96185806	Exon 10 of DOT1L(+)	IGR: 26Kb before ERAP2(+)	GRCh37	TRANSLOCATION	DOT1L (NM_032482) rearrangement: t(5;19)(q15;p13.3)(chr5:g.96185806::chr19:g.2206756)	PRECISE		MANUAL_OK	5to5	-	0	60	0	5	10	6
P-0069401-T01-IM7	SOMATIC	IKZF3	ERBB2	17	17	37879622	37989408	Exon 17 of ERBB2(+)	Intron of IKZF3(-):1Kb before exon 2	GRCh37	INVERSION	IKZF3 (NM_012481) - ERBB2 (NM_004448) fusion: c.8-1004:IKZF3_c.1997:ERBB2inv	IMPPRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {IKZF3:ERBB2}	109786	60	0	98	0	151
P-0069401-T01-IM7	SOMATIC	ROS1	ROS1	6	6	115717138	117652116	IGR: 546Kb before FRK(-)	Intron of ROS1(-):2Kb before exon 32	GRCh37	INVERSION	ROS1 (NM_002944) rearrangement: c.5249-1507:ROS1_chr6:g.115717138inv	PRECISE		MANUAL_OK	5to5	-	1934978	60	1	2	9	1
P-0069404-T01-IM7	SOMATIC	SMARCB1	SMARCB1	22	22	24130028	43062225	Intron of SMARCB1(+):579bp after exon 1	IGR: 26Kb before A4GALT(-)	GRCh37	DUPLICATION	SMARCB1 (NM_003073) rearrangement: c.93+579:SMARCB1_chr22:g.43062225dup	PRECISE		MANUAL_OK	5to3	-	18932197	26	0	3	10	4
P-0069405-T01-IM7	SOMATIC	TSC2	TSC2	16	16	2106819	2108559	Intron of TSC2(+):49bp after exon 8	Intron of TSC2(+):188bp before exon 10	GRCh37	DELETION	TSC2 (NM_000548) rearrangement: c.774+49_c.849-189del	PRECISE		MANUAL_OK	3to5	Deletion of 1 exon : out of frame	1740	60	0	4	6	4
P-0069405-T01-IM7	SOMATIC	MSH3	MSH3	5	5	56331923	79965740	IGR: 116Kb before MIER3(-)	Intron of MSH3(+):175bp before exon 4	GRCh37	DELETION	MSH3 (NM_002439) rearrangement: c.580-176:MSH3_chr5:g.56331923del	PRECISE		MANUAL_OK	3to5	-	23633817	60	0	4	6	4
P-0069410-T01-IM7	SOMATIC	NF1	KCTD9	17	8	29684111	25298353	Intron of NF1(+):3bp after exon 52	Intron of KCTD9(-):164bp before exon 4	GRCh37	TRANSLOCATION	NF1 (NM_001042492) - KCTD9 (NM_017634) rearrangement: t(8;17)(p21.2;q11.2)(chr8:g.25298353::chr17:g.29684111)	IMPPRECISE		MANUAL_OK	3to3	Protein Fusion: out of frame  {NF1:KCTD9}	0	60	0	6	0	6
P-0069446-T01-IM7	SOMATIC	FOXP1	FOXP1	3	3	71101791	71634747	Intron of FOXP1(-):14bp before exon 5	Promoter of FOXP1(-):631Kb from tx start	GRCh37	DELETION	FOXP1 (NM_001244814) rearrangement: c.421-14:FOXP1_chr3:g.71634747del	IMPPRECISE		MANUAL_OK	3to5	Deletion within transcript	532956	60	0	92	0	95
P-0069535-T01-IM7	SOMATIC	EML4	ALK	2	2	29447764	42476656	Intron of ALK(-):562bp after exon 19	Intron of EML4(+):4Kb after exon 2	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.208+3829:EML4_c.3172+563:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13028892	60	0	108	10	106
P-0069541-T01-IM7	SOMATIC	NOTCH3	ZNF625	19	19	12257236	15289719	Intron of ZNF625(-):197bp before exon 4	Exon 23 of NOTCH3(-)	GRCh37	DELETION	NOTCH3 (NM_000435) - ZNF625 (NM_145233) rearrangement: c.3752:NOTCH3_c.192-197:ZNF625del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {NOTCH3:ZNF625}	3032483	60	0	5	10	5
P-0069545-T01-IM7	SOMATIC	BRCA2	BRCA2	13	11	32919521	48526001	Intron of BRCA2(+):731bp after exon 12	IGR: 16Kb before OR4A47(+)	GRCh37	TRANSLOCATION	BRCA2 (NM_000059) rearrangement: t(11;13)(p11.2;q13.1)(chr11:g.48526001::chr13:g.32919521)	PRECISE		MANUAL_OK	3to5	-	0	20	0	8	10	9
P-0069549-T01-IM7	SOMATIC	CDK8	KDR	13	4	26923244	55958578	Exon 3 of CDK8(+)	Intron of KDR(-):205bp after exon 22	GRCh37	TRANSLOCATION	CDK8 (NM_001260) - KDR (NM_002253) rearrangement: t(4;13)(q12;q12.13)(chr4:g.55958578::chr13:g.26923244)	PRECISE		MANUAL_OK	3to3	Protein Fusion: mid-exon  {CDK8:KDR}	0	60	0	22	10	22
P-0069550-T01-IM7	SOMATIC	IGF1R	IGF1R	15	15	99401024	99500543	Intron of IGF1R(+):34Kb before exon 3	Exon 21 of IGF1R(+)	GRCh37	DUPLICATION	IGF1R (NM_000875) rearrangement: c.641-33530_c.3976dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	99519	60	0	67	10	70
P-0069558-T01-IM7	SOMATIC	RET	RET	10	10	43610106	51583285	Exon 11 of RET(+)	Intron of TIMM23B(+):149Kb before exon 7	GRCh37	DUPLICATION	RET (NM_020975) rearrangement: c.2058:RET_chr10:g.51583285dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {TIMM23B:RET}	7973179	60	0	23	10	23
P-0069560-T01-IM7	SOMATIC	ASXL1	ASXL1	20	10	31022796	37756525	Exon 12 of ASXL1(+)	IGR: 134Kb before MTRNR2L7(-)	GRCh37	TRANSLOCATION	ASXL1 (NM_015338) rearrangement: t(10;20)(p11.21;q11.21)(chr10:g.37756525::chr20:g.31022796)	PRECISE		MANUAL_OK	3to5	-	0	58	0	8	10	8
P-0069566-T01-IM7	SOMATIC	PTPRD	PTPRD	9	5	8504298	155591091	Exon 23 of PTPRD(-)	IGR: 163Kb before SGCD(+)	GRCh37	TRANSLOCATION	PTPRD (NM_002839) rearrangement: t(5;9)(q33.2;p24.1)(chr5:g.155591091::chr9:g.8504298)	PRECISE		MANUAL_OK	3to3	-	0	51	0	6	10	6
P-0069593-T01-IM7	SOMATIC	SDHB	SDHB	1	1	17354276	17362334	Exon 5 of SDHB(-)	Intron of SDHB(-):3Kb before exon 3	GRCh37	DUPLICATION	SDHB (NM_003000) rearrangement: c.201-2694_c.508dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	8058	42	0	3	6	4
P-0069593-T01-IM7	SOMATIC	GAB2	GAB2	11	11	77600919	77936164	Intron of INTS4(-):1Kb after exon 21	Exon 5 of GAB2(-)	GRCh37	DELETION	GAB2 (NM_080491) rearrangement. c.1292_chr11:g.77600919del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {GAB2:INTS4}	335245	41	0	10	10	12
P-0069593-T01-IM7	SOMATIC	PTPRS	PTPRS	19	19	5252256	5256289	Intron of PTPRS(-):4Kb after exon 9	Intron of PTPRS(-):159bp before exon 9	GRCh37	DUPLICATION	PTPRS (NM_002850) rearrangement: c.707-159_c.718+3863dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : in frame	4033	54	0	16	10	19
P-0069595-T01-IM7	SOMATIC	ERCC5	ERCC5	X	13	11979240	103518181	IGR: 177Kb before FRMPD4(+)	Exon 9 of ERCC5(+)	GRCh37	TRANSLOCATION	ERCC5 (NM_000123) rearrangement: t(X;13)(p22.2;q33.1)(chrX:g.11979240::chr13:g.103518181)	PRECISE		MANUAL_OK	3to5	-	0	60	0	6	10	6
P-0069597-T01-IM7	SOMATIC	PPARG	PPARG	3	3	12002691	12447363	IGR: 43Kb before SYN2(+)	Intron of PPARG(+):17bp before exon 5	GRCh37	INVERSION	PPARG (NM_015869) rearrangement: c.620-18:PPARG_chr3:g.12002691inv	PRECISE		MANUAL_OK	5to5	-	444672	60	0	21	10	24
P-0069599-T01-IM7	SOMATIC	NF1	NF1	17	17	29016393	29657544	IGR: 20Kb before SUZ12P1(+)	Intron of NF1(+):28bp after exon 38	GRCh37	DELETION	NF1 (NM_001042492) rearrangement: c.5812+28:NF1_chr17:g.29016393del	IMPPRECISE		MANUAL_OK	3to5	-	641151	50	0	9	0	9
P-0069605-T01-IM7	SOMATIC	SMARCA4	SMARCA4	19	19	11169068	11171903	Intron of SMARCA4(+):29bp after exon 32	Intron of SMARCA4(+):556bp before exon 36	GRCh37	DELETION	SMARCA4 (NM_003072) rearrangement: c.4533+29_c.4912-557del	PRECISE		MANUAL_OK	3to5	Deletion of 3 exons : in frame	2835	60	0	31	10	31
P-0069617-T01-IM7	SOMATIC	EML4	ALK	2	2	29448017	42499692	Intron of ALK(-):309bp after exon 19	Intron of EML4(+):8Kb after exon 5	GRCh37	INVERSION	EML4 (NM_019063) - ALK (NM_004304) fusion: c.667+7821:EML4_c.3172+310:ALKinv	PRECISE		MANUAL_OK	3to3	Protein Fusion: in frame  {EML4:ALK}	13051675	60	0	21	10	21
P-0069621-T01-IM7	SOMATIC	AKT3	AKT3	1	1	231415948	243708884	Promoter of GNPAT(+):39Kb from tx start	Exon 11 of AKT3(-)	GRCh37	DELETION	AKT3 (NM_005465) rearrangement: c.1179:AKT3_chr1:g.231415948del	PRECISE		MANUAL_OK	3to5	Antisense Fusion	12292936	60	0	16	10	14
P-0069621-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21974643	21981197	Exon 1 of CDKN2A(-)	Intron of CDKN2A(-):10Kb before exon 2	GRCh37	DELETION	CDKN2A (NM_058195) rearrangement: c.194-9990_c.194-3436del	PRECISE		MANUAL_OK	3to5	Deletion within transcript : mid-exon	6554	60	0	13	10	13
P-0069622-T01-IM7	SOMATIC	B2M	B2M	15	15	45007901	45009803	Intron of B2M(+):2bp after exon 2	3-UTR of B2M(+):6Kb after coding stop	GRCh37	DELETION	B2M (NM_004048) rearrangement: c.346+2:B2M_chr15:g.45009803del	IMPPRECISE		MANUAL_OK	3to5	-	1902	60	0	74	0	79
P-0069624-T01-IM7	SOMATIC	ARID2	ARID2	12	12	46231494	46241746	Intron of ARID2(+):4bp after exon 10	Intron of ARID2(+):872bp before exon 13	GRCh37	DUPLICATION	ARID2 (NM_152641) rearrangement: c.1330+4_c.1581-873dup	PRECISE		MANUAL_OK	5to3	Duplication of 2 exons : out of frame	10252	60	0	12	10	12
P-0069624-T01-IM7	SOMATIC	KIF5A	GLI1	12	12	57864785	57976167	Exon 12 of GLI1(+)	Intron of KIF5A(+):217bp before exon 27	GRCh37	DUPLICATION	KIF5A (NM_004984) - GLI1 (NM_005269) rearrangement: c.2993-218:KIF5A_c.2262:GLI1dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {KIF5A:GLI1}	111382	60	0	5	10	5
P-0069651-T01-IM7	SOMATIC	NFE2L2	COL3A1	2	2	178096517	189842327	Exon 5 of NFE2L2(-)	Intron of COL3A1(+):3Kb after exon 1	GRCh37	INVERSION	NFE2L2 (NM_006164) - COL3A1 (NM_000090) rearrangement: c.814:NFE2L2_c.79+3033:COL3A1inv	PRECISE		MANUAL_OK	5to5	Protein Fusion: mid-exon  {NFE2L2:COL3A1}	11745810	60	0	110	10	127
P-0069652-T01-IM7	SOMATIC	MDC1	MDC1	8	6	31488448	30679890	IGR: 9Kb before NRG1(+)	Exon 5 of MDC1(-)	GRCh37	TRANSLOCATION	MDC1 (NM_014641) rearrangement: t(6;8)(p21.33;p12)(chr6:g.30679890::chr8:g.31488448)	PRECISE		MANUAL_OK	5to5	-	0	60	0	13	10	13
P-0069655-T01-IM7	SOMATIC	FGFR1	FGFR1	8	8	38210250	38285363	5-UTR of WHSC1L1(-):77Kb before coding start	Intron of FGFR1(-):75bp after exon 6	GRCh37	DELETION	FGFR1 (NM_001174067) rearrangement: c.714+76:FGFR1_chr8:g.38210250del	PRECISE		MANUAL_OK	3to5	Transcript Fusion {FGFR1:WHSC1L1}	75113	60	0	2	6	3
P-0069661-T01-IM7	SOMATIC	SEMA5A	DROSHA	5	5	9270640	31411172	Intron of SEMA5A(-):33Kb before exon 6	Intron of DROSHA(-):178bp before exon 30	GRCh37	DUPLICATION	SEMA5A (NM_003966) - DROSHA (NM_013235) rearrangement: c.271-32638:SEMA5A_c.3526-178:DROSHAdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: in frame  {SEMA5A:DROSHA}	22140532	60	0	9	10	9
P-0069671-T01-IM7	SOMATIC	NF1	ADAP2	17	17	29266279	29586130	Intron of ADAP2(+):5Kb after exon 5	Exon 32 of NF1(+)	GRCh37	DUPLICATION	NF1 (NM_001042492) - ADAP2 (NM_018404) rearrangement: c.4413:NF1_c.510+4964:ADAP2dup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {NF1:ADAP2}	319851	60	0	41	10	50
P-0069678-T01-IM7	SOMATIC	BRCA2	BRCA2	13	13	32913347	57287774	Exon 11 of BRCA2(+)	IGR: 427Kb before PRR20D(+)	GRCh37	DELETION	BRCA2 (NM_000059) rearrangement: c.4855:BRCA2_chr13:g.57287774del	PRECISE		MANUAL_OK	3to5	-	24374427	60	0	6	10	6
P-0069710-T01-IM7	SOMATIC	PIK3C2G	PIK3C2G	12	12	18589200	18641654	Intron of PIK3C2G(+):12Kb after exon 17	Intron of PIK3C2G(+):91bp after exon 18	GRCh37	DUPLICATION	PIK3C2G (NM_004570) rearrangement: c.2381+12227_c.2562+91dup	PRECISE		MANUAL_OK	5to3	Duplication of 1 exon : out of frame	52454	60	0	34	10	34
P-0069710-T01-IM7	SOMATIC	EP300	EP300	22	22	41490477	41513430	Intron of EP300(+):1Kb after exon 1	Exon 2 of EP300(+)	GRCh37	DUPLICATION	EP300 (NM_001429) rearrangement: c.94+1375_c.334dup	PRECISE		MANUAL_OK	5to3	Duplication within transcript : mid-exon	22953	60	0	32	10	32
P-0069719-T01-IM7	SOMATIC	TET1	TET1	10	1	70392362	245006349	Intron of TET1(+):12Kb before exon 4	Exon 4 of COX20(+)	GRCh37	TRANSLOCATION	TET1 (NM_030625) rearrangement: t(1;10)(q44;q21.3)(chr1:g.245006349::chr10:g.70392362)	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {COX20:TET1}	0	22	16	5	10	16
P-0069721-T01-IM7	SOMATIC	DDX10	ATM	11	11	108165721	108771622	Exon 32 of ATM(+)	Intron of DDX10(+):17Kb before exon 17	GRCh37	DUPLICATION	DDX10 (NM_004398) - ATM (NM_000051) rearrangement: c.2305-16978:DDX10_c.4844:ATMdup	PRECISE		MANUAL_OK	5to3	Protein Fusion: mid-exon  {DDX10:ATM}	605901	60	0	59	10	61
P-0069722-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55120470	55222177	Intron of EGFR(+):33Kb after exon 1	Intron of EGFR(+):332bp after exon 7	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.88+33412_c.889+332del	PRECISE		MANUAL_OK	3to5	Deletion of 6 exons : in frame	101707	60	0	54	10	63
P-0069722-T01-IM7	SOMATIC	EGFR	EGFR	7	7	55268473	55269941	Intron of EGFR(+):367bp after exon 24	Intron of EGFR(+):268bp before exon 27	GRCh37	DELETION	EGFR (NM_005228) rearrangement: c.2946+367_c.3163-269del	PRECISE		MANUAL_OK	3to5	Deletion of 2 exons : in frame	1468	60	0	43	10	49
P-0069724-T01-IM7	SOMATIC	RAD50	RAD50	5	5	55816224	131973694	Intron of LOC101928448(-):6Kb before exon 5	Intron of RAD50(+):78bp before exon 23	GRCh37	DELETION	RAD50 (NM_005732) rearrangement: c.3476-79:RAD50_chr5:g.55816224del	PRECISE		MANUAL_OK	3to5	-	76157470	60	0	14	10	16
P-0069757-T01-IM7	SOMATIC	TARS2	NTRK1	1	1	150461252	156838028	Intron of TARS2(+):187bp before exon 3	Exon 5 of NTRK1(+)	GRCh37	DELETION	TARS2 (NM_025150) - NTRK1 (NM_002529) fusion: c.264-188:TARS2_c.561:NTRK1del	PRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {TARS2:NTRK1}	6376776	60	0	38	10	39
P-0069757-T01-IM7	SOMATIC	ATM	ATM	11	11	71611569	108196971	3-UTR of LOC100133315(-):28Kb after coding stop	Intron of ATM(+):19bp after exon 47	GRCh37	INVERSION	ATM (NM_000051) rearrangement: c.6975+19:ATM_chr11:g.71611569inv	PRECISE		MANUAL_OK	3to3	-	36585402	21	0	3	10	4
P-0069757-T01-IM7	SOMATIC	POLE	POLE	12	12	131192047	133256338	IGR: 82Kb before STX2(-)	Intron of POLE(-):101bp before exon 6	GRCh37	INVERSION	POLE (NM_006231) rearrangement: c.424-101:POLE_chr12:g.131192047inv	PRECISE		MANUAL_OK	3to3	-	2064291	60	0	67	10	67
P-0069757-T01-IM7	SOMATIC	YES1	YES1	18	3	739645	181511404	Intron of YES1(-):89bp after exon 9	IGR: 82Kb before SOX2(+)	GRCh37	TRANSLOCATION	YES1 (NM_005433) rearrangement: t(3;18)(q26.33;p11.32)(chr3:g.181511404::chr18:g.739645)	PRECISE		MANUAL_OK	5to3	-	0	60	0	10	8	10
P-0069757-T01-IM7	SOMATIC	NOTCH4	NOTCH4	6	6	32166132	39443250	Intron of NOTCH4(-):65bp after exon 26	Intron of KIF6(-):44Kb before exon 14	GRCh37	INVERSION	NOTCH4 (NM_004557) rearrangement: c.4756+66:NOTCH4_chr6:g.39443250inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	7277118	60	0	15	10	17
P-0069757-T01-IM7	SOMATIC	TAP2	TAP2	6	6	32805354	50252603	Exon 3 of TAP2(-)	IGR: 241Kb before DEFB112(-)	GRCh37	DELETION	TAP2 (NM_018833) rearrangement: c.568:TAP2_chr6:g.50252603del	PRECISE		MANUAL_OK	3to5	-	17447249	50	0	16	10	16
P-0069760-T01-IM7	SOMATIC	MEF2B	MEF2B	19	19	19257987	20940867	Exon 5 of MEF2B(-)	IGR: 113Kb before ZNF626(-)	GRCh37	INVERSION	MEF2B (NM_001145785) rearrangement: c.399:MEF2B_chr19:g.20940867inv	PRECISE		MANUAL_OK	3to3	-	1682880	60	0	81	10	81
P-0069761-T01-IM7	SOMATIC	ERBB3	ERBB3	12	12	56480531	124568467	Intron of ERBB3(+):91bp after exon 4	5-UTR of ZNF664-FAM101A(+):228Kb before coding start	GRCh37	INVERSION	ERBB3 (NM_001982) rearrangement: c.547+91:ERBB3_chr12:g.124568467inv	PRECISE		MANUAL_OK	3to3	Antisense Fusion	68087936	59	0	4	7	3
P-0069761-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39942444	42877306	Intron of ERG(-):5Kb after exon 3	Intron of TMPRSS2(-):3Kb after exon 1	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_004449) fusion: c.55+2571:TMPRSS2_c.39+5142:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	2934862	60	0	13	10	13
P-0069770-T01-IM7	SOMATIC	TMPRSS2	TMPRSS2	21	21	36628174	42868435	IGR: 117Kb before LOC100506403(-)	Intron of TMPRSS2(-):2Kb after exon 2	GRCh37	INVERSION	TMPRSS2 (NM_001135099) rearrangement: c.126+1611:TMPRSS2_chr21:g.36628174inv	PRECISE		MANUAL_OK	3to3	-	6240261	60	0	43	10	43
P-0069774-T01-IM7	SOMATIC	EWSR1	CREB3L1	22	11	29691462	46333878	Intron of EWSR1(+):766bp before exon 13	Exon 6 of CREB3L1(+)	GRCh37	TRANSLOCATION	EWSR1 (NM_013986) - CREB3L1 (NM_052854) rearrangement: t(11;22)(p11.2;q12.2)(chr11:g.46333878::chr22:g.29691462)	IMPPRECISE		MANUAL_OK	3to5	Protein Fusion: mid-exon  {EWSR1:CREB3L1}	0	60	0	6	0	6
P-0069775-T01-IM7	SOMATIC	SPOP	SPOP	17	17	47680028	47684509	Intron of SPOP(-):659bp before exon 9	Intron of SPOP(-):102bp after exon 8	GRCh37	INVERSION	SPOP (NM_001007228) rearrangement: c.837+103_c.838-659inv	PRECISE		MANUAL_OK	5to5	Antisense Fusion	4481	60	0	8	10	8
P-0069775-T01-IM7	SOMATIC	CDKN2A	CDKN2A	9	9	21967765	21968621	3-UTR of CDKN2A(-):7Kb after coding stop	Intron of CDKN2A(-):380bp before exon 3	GRCh37	DELETION	CDKN2A (NM_000077) rearrangement: c.458-380:CDKN2A_chr9:g.21967765del	IMPPRECISE		MANUAL_OK	3to5	-	856	60	0	64	0	69
P-0069777-T01-IM7	SOMATIC	TMPRSS2	ERG	21	21	39834640	42873938	Intron of ERG(-):17Kb before exon 2	Intron of TMPRSS2(-):4Kb before exon 2	GRCh37	DELETION	TMPRSS2 (NM_001135099) - ERG (NM_182918) fusion: c.56-3822:TMPRSS2_c.19-17096:ERGdel	PRECISE		MANUAL_OK	3to5	Protein Fusion: out of frame  {TMPRSS2:ERG}	3039298	60	0	40	10	40
